Query 010060
Match_columns 519
No_of_seqs 397 out of 2991
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 19:00:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sjy_A Translation initiation 99.9 1.7E-21 5.7E-26 204.9 25.8 229 71-308 5-273 (403)
2 1d2e_A Elongation factor TU (E 99.9 1.2E-21 4.1E-26 205.7 23.1 222 73-307 2-257 (397)
3 1kk1_A EIF2gamma; initiation o 99.9 2.5E-21 8.5E-26 203.8 21.0 212 72-292 8-252 (410)
4 3mca_A HBS1, elongation factor 99.9 1.3E-21 4.6E-26 215.8 16.4 225 71-309 174-457 (592)
5 1s0u_A EIF-2-gamma, translatio 99.9 4E-21 1.4E-25 202.3 18.1 212 72-292 6-250 (408)
6 2c78_A Elongation factor TU-A; 99.9 2E-20 6.9E-25 196.6 23.2 226 71-308 8-276 (405)
7 3j2k_7 ERF3, eukaryotic polype 99.9 6.2E-20 2.1E-24 195.5 26.1 220 71-308 14-295 (439)
8 3p26_A Elongation factor 1 alp 99.8 2.1E-19 7.1E-24 193.3 24.9 226 72-306 31-320 (483)
9 3avx_A Elongation factor TS, e 99.8 1.6E-19 5.4E-24 209.5 23.6 225 71-309 293-550 (1289)
10 3izq_1 HBS1P, elongation facto 99.8 1.6E-19 5.4E-24 199.9 21.9 227 71-306 164-454 (611)
11 1wb1_A Translation elongation 99.8 2.3E-20 7.7E-25 201.2 13.1 220 71-309 16-253 (482)
12 3iev_A GTP-binding protein ERA 99.8 3.4E-21 1.2E-25 195.7 6.2 215 70-304 6-268 (308)
13 1zun_B Sulfate adenylate trans 99.8 7.7E-19 2.6E-23 186.4 22.1 221 72-308 22-296 (434)
14 1f60_A Elongation factor EEF1A 99.8 3.6E-19 1.2E-23 190.5 19.3 223 72-308 5-296 (458)
15 2elf_A Protein translation elo 99.8 8E-19 2.7E-23 183.2 19.3 210 76-306 23-243 (370)
16 1r5b_A Eukaryotic peptide chai 99.8 7.9E-19 2.7E-23 188.3 19.0 216 72-305 41-321 (467)
17 1jny_A EF-1-alpha, elongation 99.8 2.4E-18 8.2E-23 182.7 20.1 218 72-305 4-282 (435)
18 1wf3_A GTP-binding protein; GT 99.8 1.9E-19 6.5E-24 182.7 4.9 205 74-304 7-258 (301)
19 1g7s_A Translation initiation 99.7 2.3E-17 8E-22 182.0 19.9 224 73-313 4-288 (594)
20 1ega_A Protein (GTP-binding pr 99.7 5.8E-18 2E-22 171.5 11.4 208 73-304 7-259 (301)
21 2ywe_A GTP-binding protein LEP 99.7 4.2E-16 1.4E-20 172.0 24.5 208 74-305 6-242 (600)
22 3tr5_A RF-3, peptide chain rel 99.7 6.8E-16 2.3E-20 168.2 23.2 215 74-304 13-346 (528)
23 3izy_P Translation initiation 99.7 1.5E-17 5.2E-22 181.3 7.5 212 73-304 3-225 (537)
24 3cb4_D GTP-binding protein LEP 99.7 1.8E-15 6E-20 167.1 23.7 207 74-305 4-240 (599)
25 1zo1_I IF2, translation initia 99.7 3.3E-17 1.1E-21 177.3 9.1 211 72-303 2-223 (501)
26 4dhe_A Probable GTP-binding pr 99.7 5.3E-16 1.8E-20 147.0 15.2 160 72-238 27-212 (223)
27 3vqt_A RF-3, peptide chain rel 99.7 1.9E-15 6.4E-20 165.4 21.4 213 75-303 32-363 (548)
28 3pqc_A Probable GTP-binding pr 99.6 2.8E-15 9.4E-20 137.9 15.4 152 73-235 22-192 (195)
29 1svi_A GTP-binding protein YSX 99.6 2E-15 6.8E-20 139.7 14.4 153 72-234 21-192 (195)
30 2h5e_A Peptide chain release f 99.6 1.5E-14 5E-19 157.7 21.4 217 74-305 13-348 (529)
31 2lkc_A Translation initiation 99.6 3.2E-15 1.1E-19 135.8 13.2 154 72-234 6-168 (178)
32 1upt_A ARL1, ADP-ribosylation 99.6 4.9E-15 1.7E-19 133.4 14.1 155 72-235 5-167 (171)
33 1dar_A EF-G, elongation factor 99.6 7.2E-14 2.5E-18 156.7 24.9 213 73-305 11-358 (691)
34 1zj6_A ADP-ribosylation factor 99.6 8.7E-15 3E-19 135.2 14.3 162 72-242 14-183 (187)
35 3j25_A Tetracycline resistance 99.6 1.4E-16 4.9E-21 177.1 1.9 209 75-304 3-295 (638)
36 2dy1_A Elongation factor G; tr 99.6 4.2E-14 1.4E-18 157.9 21.2 210 73-303 8-329 (665)
37 2qu8_A Putative nucleolar GTP- 99.6 2.4E-14 8.3E-19 137.3 16.3 156 72-234 27-202 (228)
38 4dcu_A GTP-binding protein ENG 99.6 1.7E-14 5.8E-19 153.8 16.7 143 71-217 192-354 (456)
39 2rdo_7 EF-G, elongation factor 99.6 1.9E-13 6.5E-18 153.6 26.0 213 73-305 9-366 (704)
40 2hjg_A GTP-binding protein ENG 99.6 1.3E-14 4.5E-19 153.9 15.6 143 71-217 172-334 (436)
41 2xex_A Elongation factor G; GT 99.6 1.2E-13 4E-18 155.1 24.1 213 73-304 9-357 (693)
42 2dyk_A GTP-binding protein; GT 99.6 9.2E-15 3.2E-19 130.3 12.1 144 75-234 2-159 (161)
43 4fn5_A EF-G 1, elongation fact 99.6 2.9E-14 9.9E-19 160.3 19.1 106 75-182 14-151 (709)
44 1kao_A RAP2A; GTP-binding prot 99.6 1.7E-14 5.9E-19 128.5 13.6 149 74-234 3-163 (167)
45 1r8s_A ADP-ribosylation factor 99.6 3E-14 1E-18 127.6 14.9 152 75-235 1-160 (164)
46 2hxs_A RAB-26, RAS-related pro 99.6 2.3E-14 8E-19 130.0 14.2 154 72-236 4-172 (178)
47 1c1y_A RAS-related protein RAP 99.6 1.6E-14 5.6E-19 129.2 12.8 149 74-234 3-164 (167)
48 4bas_A ADP-ribosylation factor 99.6 3E-14 1E-18 131.9 14.6 155 72-234 15-186 (199)
49 2efe_B Small GTP-binding prote 99.6 3.1E-14 1.1E-18 129.6 14.2 153 72-237 10-175 (181)
50 1z0j_A RAB-22, RAS-related pro 99.6 2.6E-14 9E-19 128.2 13.3 152 73-235 5-167 (170)
51 3clv_A RAB5 protein, putative; 99.6 9.6E-14 3.3E-18 127.5 17.1 150 72-234 5-201 (208)
52 1zd9_A ADP-ribosylation factor 99.6 3.4E-14 1.2E-18 131.7 13.7 155 72-235 20-183 (188)
53 2erx_A GTP-binding protein DI- 99.6 3.7E-14 1.3E-18 127.2 13.4 151 74-236 3-166 (172)
54 1ksh_A ARF-like protein 2; sma 99.5 3E-14 1E-18 131.0 12.7 156 72-236 16-179 (186)
55 3kkq_A RAS-related protein M-R 99.5 5.5E-14 1.9E-18 128.6 14.4 151 71-233 15-178 (183)
56 1ek0_A Protein (GTP-binding pr 99.5 4.6E-14 1.6E-18 126.3 13.6 150 74-235 3-167 (170)
57 3bc1_A RAS-related protein RAB 99.5 5.4E-14 1.9E-18 128.7 14.3 149 73-233 10-181 (195)
58 2h57_A ADP-ribosylation factor 99.5 4.7E-14 1.6E-18 130.6 13.8 153 72-235 19-185 (190)
59 2g6b_A RAS-related protein RAB 99.5 3E-14 1E-18 129.6 11.7 152 72-235 8-172 (180)
60 4dsu_A GTPase KRAS, isoform 2B 99.5 4.6E-14 1.6E-18 129.1 12.7 148 73-233 3-162 (189)
61 2b6h_A ADP-ribosylation factor 99.5 5.1E-14 1.7E-18 131.6 13.0 156 71-235 26-189 (192)
62 1r2q_A RAS-related protein RAB 99.5 8.4E-14 2.9E-18 124.7 13.9 151 73-236 5-168 (170)
63 1u8z_A RAS-related protein RAL 99.5 6.4E-14 2.2E-18 124.9 13.1 149 73-234 3-164 (168)
64 2fn4_A P23, RAS-related protei 99.5 5.1E-14 1.8E-18 127.6 12.2 150 73-234 8-169 (181)
65 2h17_A ADP-ribosylation factor 99.5 3.7E-14 1.3E-18 130.4 11.4 153 72-233 19-179 (181)
66 3llu_A RAS-related GTP-binding 99.5 1.6E-13 5.3E-18 128.3 15.7 156 72-234 18-194 (196)
67 3tkl_A RAS-related protein RAB 99.5 8.6E-14 2.9E-18 128.5 13.7 151 72-234 14-176 (196)
68 3t5g_A GTP-binding protein RHE 99.5 3.7E-14 1.3E-18 129.6 11.1 152 73-236 5-168 (181)
69 1z0f_A RAB14, member RAS oncog 99.5 7.8E-14 2.7E-18 126.2 13.1 150 73-235 14-176 (179)
70 1mh1_A RAC1; GTP-binding, GTPa 99.5 1.2E-13 4.3E-18 125.9 14.4 158 73-238 4-181 (186)
71 2gf9_A RAS-related protein RAB 99.5 6.3E-14 2.1E-18 129.6 12.3 149 74-234 22-182 (189)
72 2p5s_A RAS and EF-hand domain 99.5 8.9E-14 3E-18 130.0 13.4 152 72-235 26-195 (199)
73 2fg5_A RAB-22B, RAS-related pr 99.5 1.2E-13 4.2E-18 128.4 14.1 151 73-236 22-185 (192)
74 1wms_A RAB-9, RAB9, RAS-relate 99.5 1.4E-13 4.9E-18 124.7 14.1 151 73-235 6-172 (177)
75 2a9k_A RAS-related protein RAL 99.5 8.4E-14 2.9E-18 126.8 12.5 149 73-234 17-178 (187)
76 1fzq_A ADP-ribosylation factor 99.5 1.1E-13 3.8E-18 127.9 13.4 154 72-236 14-177 (181)
77 2y8e_A RAB-protein 6, GH09086P 99.5 6.9E-14 2.4E-18 126.5 11.8 149 74-235 14-175 (179)
78 2x77_A ADP-ribosylation factor 99.5 3.2E-14 1.1E-18 131.4 9.7 155 72-235 20-182 (189)
79 1z08_A RAS-related protein RAB 99.5 6.4E-14 2.2E-18 126.0 11.5 149 73-234 5-166 (170)
80 2nzj_A GTP-binding protein REM 99.5 1.6E-13 5.6E-18 123.8 14.2 148 73-234 3-166 (175)
81 3q72_A GTP-binding protein RAD 99.5 8.3E-14 2.8E-18 125.0 12.2 147 74-233 2-160 (166)
82 1z2a_A RAS-related protein RAB 99.5 5.9E-14 2E-18 125.7 11.1 149 73-234 4-164 (168)
83 2ce2_X GTPase HRAS; signaling 99.5 1.6E-13 5.4E-18 121.8 13.8 148 74-234 3-162 (166)
84 1f6b_A SAR1; gtpases, N-termin 99.5 6.7E-14 2.3E-18 131.6 11.8 155 72-233 23-195 (198)
85 3bwd_D RAC-like GTP-binding pr 99.5 7.3E-14 2.5E-18 127.2 11.6 154 72-236 6-180 (182)
86 3i8s_A Ferrous iron transport 99.5 3.7E-14 1.3E-18 141.4 10.4 146 74-236 3-168 (274)
87 2fh5_B SR-beta, signal recogni 99.5 2.3E-13 8E-18 128.2 15.1 110 72-183 5-130 (214)
88 2bov_A RAla, RAS-related prote 99.5 1.8E-13 6.1E-18 127.3 14.0 150 72-234 12-174 (206)
89 1zbd_A Rabphilin-3A; G protein 99.5 1.4E-13 4.6E-18 128.5 13.1 135 74-216 8-155 (203)
90 1mky_A Probable GTP-binding pr 99.5 3.1E-13 1.1E-17 143.4 17.2 152 72-232 178-350 (439)
91 2a5j_A RAS-related protein RAB 99.5 1.2E-13 4.2E-18 128.1 12.4 151 71-234 18-181 (191)
92 2gf0_A GTP-binding protein DI- 99.5 2.4E-13 8.2E-18 125.8 14.3 152 72-236 6-170 (199)
93 2il1_A RAB12; G-protein, GDP, 99.5 5.2E-14 1.8E-18 131.1 9.8 150 74-234 26-187 (192)
94 3t1o_A Gliding protein MGLA; G 99.5 1.5E-13 5.3E-18 126.2 12.8 150 72-234 12-189 (198)
95 2oil_A CATX-8, RAS-related pro 99.5 2.1E-13 7.2E-18 126.2 13.6 150 72-234 23-185 (193)
96 3tw8_B RAS-related protein RAB 99.5 1.1E-13 3.8E-18 125.4 11.4 150 72-233 7-167 (181)
97 3oes_A GTPase rhebl1; small GT 99.5 1.3E-13 4.4E-18 129.2 12.1 153 72-236 22-186 (201)
98 3cph_A RAS-related protein SEC 99.5 1.3E-13 4.6E-18 129.1 12.2 148 72-232 18-177 (213)
99 3iby_A Ferrous iron transport 99.5 4E-14 1.4E-18 140.2 9.0 143 75-234 2-164 (256)
100 4gzl_A RAS-related C3 botulinu 99.5 1.9E-13 6.3E-18 128.9 13.0 156 71-234 27-202 (204)
101 2gj8_A MNME, tRNA modification 99.5 2.4E-13 8.3E-18 124.9 13.5 142 73-234 3-163 (172)
102 1moz_A ARL1, ADP-ribosylation 99.5 7.5E-14 2.6E-18 127.5 9.9 154 72-234 16-177 (183)
103 1m2o_B GTP-binding protein SAR 99.5 1.5E-13 5E-18 128.2 12.1 155 72-233 21-188 (190)
104 3dz8_A RAS-related protein RAB 99.5 1E-13 3.6E-18 128.5 10.8 151 72-234 21-183 (191)
105 3a1s_A Iron(II) transport prot 99.5 1.4E-13 4.7E-18 136.4 12.1 146 73-235 4-165 (258)
106 2atv_A RERG, RAS-like estrogen 99.5 3E-13 1E-17 125.9 13.5 150 72-234 26-188 (196)
107 3c5c_A RAS-like protein 12; GD 99.5 3E-13 1E-17 125.6 13.4 150 72-234 19-183 (187)
108 1vg8_A RAS-related protein RAB 99.5 3.2E-13 1.1E-17 125.9 13.6 151 72-234 6-172 (207)
109 1x3s_A RAS-related protein RAB 99.5 3.2E-13 1.1E-17 124.3 13.4 151 73-236 14-177 (195)
110 1ky3_A GTP-binding protein YPT 99.5 1.8E-13 6.1E-18 124.1 11.4 151 72-234 6-175 (182)
111 1mky_A Probable GTP-binding pr 99.5 1.8E-13 6.1E-18 145.2 13.2 146 75-235 2-164 (439)
112 3q85_A GTP-binding protein REM 99.5 2.1E-13 7.1E-18 122.7 11.7 147 75-233 3-163 (169)
113 1z06_A RAS-related protein RAB 99.5 2.5E-13 8.7E-18 125.5 12.5 153 73-234 19-185 (189)
114 1g16_A RAS-related protein SEC 99.5 2.7E-13 9.2E-18 121.6 12.2 148 74-234 3-162 (170)
115 3reg_A RHO-like small GTPase; 99.5 1.5E-13 5.1E-18 127.6 10.7 154 72-236 21-187 (194)
116 2bcg_Y Protein YP2, GTP-bindin 99.5 3.4E-13 1.2E-17 126.3 13.1 149 73-233 7-167 (206)
117 3o47_A ADP-ribosylation factor 99.5 1.8E-13 6.1E-18 140.2 11.7 153 74-235 165-325 (329)
118 4djt_A GTP-binding nuclear pro 99.5 1.1E-13 3.9E-18 130.7 9.5 151 72-234 9-172 (218)
119 2wji_A Ferrous iron transport 99.5 3.3E-13 1.1E-17 122.7 12.0 146 74-234 3-162 (165)
120 2atx_A Small GTP binding prote 99.5 6.1E-13 2.1E-17 123.2 13.6 155 73-235 17-191 (194)
121 3k53_A Ferrous iron transport 99.5 2E-13 6.8E-18 135.3 10.9 144 74-234 3-163 (271)
122 2xtp_A GTPase IMAP family memb 99.4 3.9E-13 1.3E-17 131.6 12.5 155 72-236 20-207 (260)
123 3con_A GTPase NRAS; structural 99.4 6.4E-13 2.2E-17 122.5 13.2 148 73-233 20-179 (190)
124 2fu5_C RAS-related protein RAB 99.4 1.3E-13 4.4E-18 126.2 8.4 148 73-233 7-167 (183)
125 2hjg_A GTP-binding protein ENG 99.4 8E-14 2.7E-18 147.8 8.0 144 75-236 4-164 (436)
126 2bme_A RAB4A, RAS-related prot 99.4 2.9E-13 1E-17 123.9 10.6 149 73-234 9-170 (186)
127 2iwr_A Centaurin gamma 1; ANK 99.4 8.4E-13 2.9E-17 120.2 13.5 148 72-233 5-165 (178)
128 2f7s_A C25KG, RAS-related prot 99.4 2.4E-13 8.1E-18 128.4 10.1 150 73-234 24-196 (217)
129 2j0v_A RAC-like GTP-binding pr 99.4 5.3E-13 1.8E-17 125.6 12.2 154 72-236 7-179 (212)
130 1xzp_A Probable tRNA modificat 99.4 4.5E-13 1.5E-17 144.4 13.2 143 74-234 243-402 (482)
131 2gco_A H9, RHO-related GTP-bin 99.4 7.4E-13 2.5E-17 124.1 13.1 154 73-234 24-197 (201)
132 2fv8_A H6, RHO-related GTP-bin 99.4 1.3E-12 4.5E-17 123.0 14.2 157 73-236 24-199 (207)
133 4dcu_A GTP-binding protein ENG 99.4 2.4E-13 8.1E-18 145.0 9.9 145 74-236 23-184 (456)
134 3cpj_B GTP-binding protein YPT 99.4 4.8E-13 1.6E-17 127.6 10.9 152 73-237 12-176 (223)
135 2yc2_C IFT27, small RAB-relate 99.4 2.4E-13 8.3E-18 126.4 8.5 147 73-232 19-187 (208)
136 2q3h_A RAS homolog gene family 99.4 1.8E-12 6.1E-17 120.7 14.4 153 71-234 17-192 (201)
137 3lvq_E ARF-GAP with SH3 domain 99.4 6.5E-13 2.2E-17 142.4 13.1 154 73-235 321-482 (497)
138 2o52_A RAS-related protein RAB 99.4 4.9E-13 1.7E-17 125.4 10.5 149 72-233 23-184 (200)
139 2hup_A RAS-related protein RAB 99.4 9.6E-13 3.3E-17 123.7 12.5 151 73-235 28-191 (201)
140 3ihw_A Centg3; RAS, centaurin, 99.4 2E-12 6.8E-17 120.1 14.5 149 71-233 17-176 (184)
141 3q3j_B RHO-related GTP-binding 99.4 7.6E-13 2.6E-17 126.0 11.9 154 72-236 25-202 (214)
142 2qtf_A Protein HFLX, GTP-bindi 99.4 4.4E-12 1.5E-16 132.0 18.5 151 74-234 179-351 (364)
143 2wjg_A FEOB, ferrous iron tran 99.4 5.8E-13 2E-17 122.3 10.6 149 73-236 6-168 (188)
144 2cxx_A Probable GTP-binding pr 99.4 3.9E-12 1.3E-16 116.5 16.1 148 75-234 2-181 (190)
145 2ew1_A RAS-related protein RAB 99.4 8.2E-13 2.8E-17 125.1 11.7 149 73-234 25-186 (201)
146 3lxw_A GTPase IMAP family memb 99.4 3.6E-12 1.2E-16 125.1 16.0 159 71-236 18-207 (247)
147 3cbq_A GTP-binding protein REM 99.4 2.3E-12 7.8E-17 120.9 13.5 151 72-235 21-186 (195)
148 3b1v_A Ferrous iron uptake tra 99.4 1E-12 3.6E-17 131.4 11.8 144 74-235 3-162 (272)
149 2j69_A Bacterial dynamin-like 99.4 2.5E-12 8.5E-17 144.3 16.0 65 118-183 174-245 (695)
150 2j1l_A RHO-related GTP-binding 99.4 2.6E-12 9E-17 121.9 13.8 156 72-235 32-207 (214)
151 3t5d_A Septin-7; GTP-binding p 99.4 2.4E-12 8.2E-17 127.8 13.7 151 73-234 7-201 (274)
152 3qq5_A Small GTP-binding prote 99.4 2.2E-13 7.5E-18 144.6 6.5 149 72-237 32-196 (423)
153 1jwy_B Dynamin A GTPase domain 99.4 7.6E-13 2.6E-17 132.7 9.8 67 116-183 129-213 (315)
154 3gee_A MNME, tRNA modification 99.4 9.7E-13 3.3E-17 141.7 11.2 144 74-235 233-396 (476)
155 2aka_B Dynamin-1; fusion prote 99.4 5.1E-13 1.7E-17 132.6 8.2 141 73-217 25-238 (299)
156 1m7b_A RND3/RHOE small GTP-bin 99.4 4.6E-12 1.6E-16 116.7 14.1 156 72-234 5-180 (184)
157 1lnz_A SPO0B-associated GTP-bi 99.4 7.6E-13 2.6E-17 136.8 9.3 147 76-236 160-329 (342)
158 3l0i_B RAS-related protein RAB 99.4 4E-14 1.4E-18 132.4 -0.6 153 72-236 31-195 (199)
159 1nrj_B SR-beta, signal recogni 99.4 1.4E-12 4.7E-17 123.2 9.7 142 72-216 10-168 (218)
160 3geh_A MNME, tRNA modification 99.4 8.1E-13 2.8E-17 141.7 8.6 145 73-236 223-383 (462)
161 3lxx_A GTPase IMAP family memb 99.4 6.9E-12 2.3E-16 121.3 14.1 158 72-235 27-212 (239)
162 1n0u_A EF-2, elongation factor 99.3 2.2E-11 7.4E-16 139.4 20.4 107 74-181 19-163 (842)
163 2e87_A Hypothetical protein PH 99.3 1.3E-11 4.4E-16 127.5 16.4 149 72-234 165-333 (357)
164 1pui_A ENGB, probable GTP-bind 99.3 1.1E-11 3.8E-16 116.1 13.9 155 71-234 23-196 (210)
165 2wkq_A NPH1-1, RAS-related C3 99.3 6.4E-12 2.2E-16 125.7 12.8 157 72-236 153-329 (332)
166 1gwn_A RHO-related GTP-binding 99.3 1.4E-11 4.8E-16 116.7 14.4 156 72-234 26-201 (205)
167 3gj0_A GTP-binding nuclear pro 99.3 2.1E-12 7.2E-17 122.6 8.3 151 71-236 12-174 (221)
168 3th5_A RAS-related C3 botulinu 99.0 1.4E-13 4.7E-18 129.1 0.0 153 72-232 28-200 (204)
169 3p32_A Probable GTPase RV1496/ 99.3 1.1E-11 3.7E-16 128.1 13.9 151 71-232 76-279 (355)
170 3r7w_A Gtpase1, GTP-binding pr 99.3 4.4E-11 1.5E-15 121.0 18.0 141 73-216 2-166 (307)
171 2www_A Methylmalonic aciduria 99.3 3.4E-11 1.2E-15 124.4 16.8 150 72-232 72-274 (349)
172 4dkx_A RAS-related protein RAB 99.3 2.8E-11 9.7E-16 116.9 13.6 149 75-236 14-175 (216)
173 2zej_A Dardarin, leucine-rich 99.3 6.7E-11 2.3E-15 109.2 14.0 152 75-235 3-176 (184)
174 2ged_A SR-beta, signal recogni 99.3 1.5E-11 5.2E-16 113.4 9.7 121 72-195 46-182 (193)
175 2x2e_A Dynamin-1; nitration, h 99.2 5.7E-12 2E-16 129.9 6.1 139 74-216 31-242 (353)
176 2g3y_A GTP-binding protein GEM 99.2 7.8E-11 2.7E-15 113.2 13.4 150 73-234 36-200 (211)
177 2qpt_A EH domain-containing pr 99.2 3.5E-11 1.2E-15 131.6 12.4 122 72-195 63-244 (550)
178 2p67_A LAO/AO transport system 99.2 3.8E-11 1.3E-15 123.5 11.8 149 72-232 54-256 (341)
179 3dpu_A RAB family protein; roc 99.2 3.5E-11 1.2E-15 130.6 11.8 151 72-236 39-207 (535)
180 2cjw_A GTP-binding protein GEM 99.2 6.9E-11 2.4E-15 110.5 12.1 149 73-233 5-168 (192)
181 1wxq_A GTP-binding protein; st 99.2 4.7E-11 1.6E-15 125.7 11.3 77 75-151 1-114 (397)
182 3zvr_A Dynamin-1; hydrolase, D 99.2 1.8E-11 6.1E-16 138.2 8.5 140 74-217 51-263 (772)
183 1h65_A Chloroplast outer envel 99.2 1.7E-10 5.7E-15 114.1 14.3 112 72-183 37-169 (270)
184 4a9a_A Ribosome-interacting GT 99.2 3.5E-11 1.2E-15 126.0 9.0 103 74-180 72-194 (376)
185 3def_A T7I23.11 protein; chlor 99.2 3.1E-10 1E-14 111.9 15.0 111 72-182 34-165 (262)
186 3t34_A Dynamin-related protein 99.1 6.5E-11 2.2E-15 122.1 8.4 94 116-216 134-245 (360)
187 2qm8_A GTPase/ATPase; G protei 99.1 7.2E-10 2.5E-14 114.0 15.8 139 72-216 53-245 (337)
188 2f9l_A RAB11B, member RAS onco 99.1 7.1E-10 2.4E-14 103.6 13.3 134 74-216 5-152 (199)
189 3c5h_A Glucocorticoid receptor 99.1 3.7E-10 1.3E-14 110.9 11.9 83 138-233 162-251 (255)
190 1udx_A The GTP-binding protein 99.1 1.1E-09 3.8E-14 116.0 15.3 148 75-236 158-324 (416)
191 2wsm_A Hydrogenase expression/ 99.1 1.3E-10 4.6E-15 109.9 6.6 145 74-235 30-212 (221)
192 2qag_A Septin-2, protein NEDD5 99.1 4.3E-10 1.5E-14 116.7 10.9 154 72-233 35-233 (361)
193 1yrb_A ATP(GTP)binding protein 99.1 2.9E-09 1E-13 103.4 15.8 109 118-234 109-254 (262)
194 1oix_A RAS-related protein RAB 99.0 5.3E-09 1.8E-13 97.4 13.1 147 74-233 29-188 (191)
195 2qag_C Septin-7; cell cycle, c 98.9 9.8E-09 3.3E-13 108.8 13.1 141 70-216 27-211 (418)
196 3r7w_B Gtpase2, GTP-binding pr 98.9 3E-08 1E-12 102.0 16.2 152 77-236 2-173 (331)
197 1jal_A YCHF protein; nucleotid 98.9 2.2E-08 7.6E-13 104.2 14.7 75 75-150 3-108 (363)
198 2dby_A GTP-binding protein; GD 98.8 1.9E-08 6.5E-13 104.9 12.9 76 75-150 2-111 (368)
199 2hf9_A Probable hydrogenase ni 98.7 4.2E-08 1.5E-12 92.9 11.2 146 73-233 37-220 (226)
200 2j37_W Signal recognition part 98.7 8.1E-08 2.8E-12 104.0 13.3 109 72-183 99-255 (504)
201 2qag_B Septin-6, protein NEDD5 98.7 5E-08 1.7E-12 103.6 9.9 133 75-213 43-217 (427)
202 2qnr_A Septin-2, protein NEDD5 98.6 1.1E-07 3.7E-12 96.2 11.3 140 71-216 15-199 (301)
203 3sop_A Neuronal-specific septi 98.5 3.4E-07 1.2E-11 91.3 11.5 121 75-198 3-169 (270)
204 2v3c_C SRP54, signal recogniti 98.5 2E-07 6.7E-12 99.2 9.8 108 72-182 97-252 (432)
205 1tq4_A IIGP1, interferon-induc 98.5 1.6E-06 5.4E-11 91.7 16.3 157 73-236 68-252 (413)
206 3ec1_A YQEH GTPase; atnos1, at 98.5 9.9E-09 3.4E-13 106.8 -1.9 122 75-198 163-303 (369)
207 3dm5_A SRP54, signal recogniti 98.4 7.7E-06 2.6E-10 87.2 18.6 130 71-213 97-274 (443)
208 3h2y_A GTPase family protein; 98.4 2.3E-08 7.7E-13 104.1 -1.7 121 75-198 161-302 (368)
209 1j8m_F SRP54, signal recogniti 98.3 5.5E-06 1.9E-10 83.7 14.2 107 74-183 98-254 (297)
210 3kl4_A SRP54, signal recogniti 98.3 1.6E-05 5.3E-10 84.6 18.1 130 71-213 94-273 (433)
211 2ohf_A Protein OLA1, GTP-bindi 98.3 1E-06 3.4E-11 92.8 7.9 78 72-149 20-127 (396)
212 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 5.4E-06 1.8E-10 87.1 9.6 79 72-150 18-127 (392)
213 1f5n_A Interferon-induced guan 98.1 2.7E-06 9.1E-11 93.8 7.2 89 71-163 35-145 (592)
214 3e70_C DPA, signal recognition 98.0 7.3E-05 2.5E-09 76.6 14.8 128 71-212 126-302 (328)
215 2xxa_A Signal recognition part 97.9 0.00014 4.9E-09 77.2 14.6 109 72-183 98-255 (433)
216 2yhs_A FTSY, cell division pro 97.9 0.00012 4.2E-09 79.0 13.9 128 71-212 290-472 (503)
217 1vma_A Cell division protein F 97.8 0.00015 5.1E-09 73.6 13.5 128 71-212 101-283 (306)
218 1zu4_A FTSY; GTPase, signal re 97.7 0.00028 9.7E-09 71.9 13.4 110 71-183 102-269 (320)
219 1rj9_A FTSY, signal recognitio 97.7 0.00048 1.7E-08 69.7 14.8 126 73-212 101-281 (304)
220 1puj_A YLQF, conserved hypothe 97.7 2.5E-05 8.4E-10 78.2 5.0 55 72-128 118-175 (282)
221 2ffh_A Protein (FFH); SRP54, s 97.7 0.00044 1.5E-08 73.3 14.7 107 73-182 97-251 (425)
222 3szr_A Interferon-induced GTP- 97.7 0.00011 3.8E-09 81.1 10.4 65 118-183 147-229 (608)
223 1puj_A YLQF, conserved hypothe 97.6 0.00022 7.4E-09 71.3 9.6 82 124-216 5-90 (282)
224 2px0_A Flagellar biosynthesis 97.5 0.00027 9.1E-09 71.2 8.8 109 72-183 103-254 (296)
225 1ls1_A Signal recognition part 97.4 0.0015 5E-08 65.7 13.3 107 73-183 97-252 (295)
226 4dzz_A Plasmid partitioning pr 97.3 0.0017 5.7E-08 60.0 12.1 105 75-181 2-143 (206)
227 2yv5_A YJEQ protein; hydrolase 97.3 0.00043 1.5E-08 69.7 8.6 85 135-230 76-162 (302)
228 3ec1_A YQEH GTPase; atnos1, at 97.3 0.00037 1.3E-08 72.2 7.7 106 120-233 51-158 (369)
229 3cnl_A YLQF, putative uncharac 97.3 0.0003 1E-08 69.6 6.2 87 126-231 5-95 (262)
230 3b9q_A Chloroplast SRP recepto 97.2 0.0055 1.9E-07 61.8 15.1 27 71-97 97-123 (302)
231 3ohm_A Guanine nucleotide-bind 97.2 0.0026 9E-08 65.1 12.8 116 115-236 164-317 (327)
232 2og2_A Putative signal recogni 97.2 0.0052 1.8E-07 63.7 14.9 129 71-212 154-337 (359)
233 4fid_A G protein alpha subunit 97.2 0.0029 9.9E-08 65.2 12.8 67 115-182 158-242 (340)
234 1u0l_A Probable GTPase ENGC; p 97.2 0.0012 4E-08 66.4 9.6 102 118-231 63-167 (301)
235 3cnl_A YLQF, putative uncharac 97.1 0.00012 4.1E-09 72.4 1.7 52 75-128 100-154 (262)
236 3q5d_A Atlastin-1; G protein, 97.1 0.00052 1.8E-08 73.2 6.4 27 71-97 64-90 (447)
237 3la6_A Tyrosine-protein kinase 97.1 0.0039 1.3E-07 62.3 12.3 64 118-181 202-267 (286)
238 3h2y_A GTPase family protein; 97.0 0.00078 2.7E-08 69.8 6.8 104 122-233 51-156 (368)
239 1cip_A Protein (guanine nucleo 96.9 0.0012 4E-08 68.3 7.2 115 115-235 190-342 (353)
240 1hyq_A MIND, cell division inh 96.9 0.0051 1.7E-07 59.3 11.0 65 118-182 111-176 (263)
241 3cwq_A Para family chromosome 96.8 0.0028 9.7E-08 59.8 8.5 106 76-182 2-134 (209)
242 3end_A Light-independent proto 96.8 0.004 1.4E-07 61.8 10.0 64 117-180 156-225 (307)
243 1zcb_A G alpha I/13; GTP-bindi 96.8 0.0012 4E-08 68.5 6.2 113 116-234 199-350 (362)
244 3ea0_A ATPase, para family; al 96.8 0.0062 2.1E-07 57.8 10.2 64 118-181 119-185 (245)
245 1t9h_A YLOQ, probable GTPase E 96.7 0.0021 7E-08 65.3 6.9 74 135-216 83-161 (307)
246 3bfv_A CAPA1, CAPB2, membrane 96.7 0.0094 3.2E-07 58.9 11.3 64 118-181 192-257 (271)
247 3q9l_A Septum site-determining 96.6 0.0072 2.5E-07 57.8 9.7 64 117-180 113-185 (260)
248 3cio_A ETK, tyrosine-protein k 96.6 0.0095 3.3E-07 59.7 10.9 64 118-181 214-279 (299)
249 3l82_B F-box only protein 4; T 96.6 0.032 1.1E-06 54.1 13.7 154 71-234 13-220 (227)
250 2oze_A ORF delta'; para, walke 96.5 0.022 7.4E-07 56.1 12.8 64 118-181 155-225 (298)
251 3k9g_A PF-32 protein; ssgcid, 96.5 0.022 7.7E-07 55.0 12.4 64 117-180 144-209 (267)
252 1lvg_A Guanylate kinase, GMP k 96.1 0.0024 8.3E-08 59.8 2.7 26 73-98 3-28 (198)
253 3tr0_A Guanylate kinase, GMP k 96.0 0.0041 1.4E-07 57.4 3.8 26 73-98 6-31 (205)
254 1kgd_A CASK, peripheral plasma 96.0 0.0039 1.3E-07 57.3 3.6 25 74-98 5-29 (180)
255 3a00_A Guanylate kinase, GMP k 95.9 0.0032 1.1E-07 58.1 2.8 25 74-98 1-25 (186)
256 3c8u_A Fructokinase; YP_612366 95.9 0.0048 1.6E-07 57.9 3.9 28 72-99 20-47 (208)
257 1zp6_A Hypothetical protein AT 95.9 0.0045 1.6E-07 56.5 3.7 26 72-97 7-32 (191)
258 3tau_A Guanylate kinase, GMP k 95.8 0.0053 1.8E-07 57.8 3.8 27 72-98 6-32 (208)
259 2kjq_A DNAA-related protein; s 95.8 0.028 9.7E-07 50.4 8.4 26 74-99 36-61 (149)
260 1znw_A Guanylate kinase, GMP k 95.7 0.0057 2E-07 57.3 3.6 27 72-98 18-44 (207)
261 2rcn_A Probable GTPase ENGC; Y 95.7 0.026 8.9E-07 58.4 8.8 84 135-229 127-211 (358)
262 1azs_C GS-alpha; complex (lyas 95.7 0.024 8.2E-07 59.6 8.6 65 116-181 215-297 (402)
263 2j41_A Guanylate kinase; GMP, 95.6 0.0069 2.4E-07 55.8 3.8 26 73-98 5-30 (207)
264 1ye8_A Protein THEP1, hypothet 95.6 0.0062 2.1E-07 56.5 3.3 23 76-98 2-24 (178)
265 1z6g_A Guanylate kinase; struc 95.6 0.0056 1.9E-07 58.2 3.0 27 72-98 21-47 (218)
266 3zvl_A Bifunctional polynucleo 95.5 0.017 5.7E-07 60.6 6.7 85 71-175 255-343 (416)
267 1t9h_A YLOQ, probable GTPase E 95.5 0.0028 9.7E-08 64.3 0.8 26 73-98 172-197 (307)
268 3asz_A Uridine kinase; cytidin 95.5 0.0071 2.4E-07 56.3 3.5 27 72-98 4-30 (211)
269 1s96_A Guanylate kinase, GMP k 95.5 0.0078 2.7E-07 57.8 3.7 28 72-99 14-41 (219)
270 4eun_A Thermoresistant glucoki 95.5 0.0082 2.8E-07 55.8 3.7 27 72-98 27-53 (200)
271 1jbk_A CLPB protein; beta barr 95.5 0.028 9.6E-07 49.9 7.1 25 74-98 43-67 (195)
272 3ney_A 55 kDa erythrocyte memb 95.4 0.0081 2.8E-07 57.1 3.6 26 73-98 18-43 (197)
273 1ly1_A Polynucleotide kinase; 95.4 0.0098 3.3E-07 53.3 3.7 23 74-96 2-24 (181)
274 2qor_A Guanylate kinase; phosp 95.3 0.0091 3.1E-07 55.7 3.2 27 72-98 10-36 (204)
275 3uie_A Adenylyl-sulfate kinase 95.2 0.012 4.2E-07 54.6 3.9 27 72-98 23-49 (200)
276 3bos_A Putative DNA replicatio 95.2 0.027 9.1E-07 52.5 6.2 27 73-99 51-77 (242)
277 3te6_A Regulatory protein SIR3 95.2 0.15 5E-06 51.9 12.1 28 71-98 42-69 (318)
278 4gp7_A Metallophosphoesterase; 95.1 0.0097 3.3E-07 54.2 2.9 25 73-97 8-32 (171)
279 2w58_A DNAI, primosome compone 95.1 0.025 8.6E-07 52.1 5.8 26 74-99 54-79 (202)
280 3l2o_B F-box only protein 4; s 95.1 0.14 4.8E-06 51.8 11.5 97 129-235 200-306 (312)
281 2bbw_A Adenylate kinase 4, AK4 95.1 0.012 4E-07 56.6 3.5 25 73-97 26-50 (246)
282 2xj4_A MIPZ; replication, cell 95.0 0.049 1.7E-06 53.6 8.0 32 118-149 104-136 (286)
283 3aez_A Pantothenate kinase; tr 95.0 0.014 4.8E-07 59.1 4.1 29 71-99 87-115 (312)
284 1cp2_A CP2, nitrogenase iron p 95.0 0.11 3.7E-06 50.1 10.2 65 117-181 115-187 (269)
285 2afh_E Nitrogenase iron protei 95.0 0.12 4.3E-06 50.5 10.8 64 117-180 118-189 (289)
286 2xtz_A Guanine nucleotide-bind 95.0 0.022 7.4E-07 58.8 5.5 65 116-181 181-263 (354)
287 1htw_A HI0065; nucleotide-bind 95.0 0.015 5.2E-07 53.0 3.9 27 72-98 31-57 (158)
288 2rcn_A Probable GTPase ENGC; Y 95.0 0.011 3.9E-07 61.1 3.3 26 74-99 215-240 (358)
289 1kag_A SKI, shikimate kinase I 95.0 0.012 4E-07 52.8 2.9 25 74-98 4-28 (173)
290 1knq_A Gluconate kinase; ALFA/ 95.0 0.017 6E-07 52.0 4.1 25 73-97 7-31 (175)
291 3tif_A Uncharacterized ABC tra 94.9 0.013 4.5E-07 56.7 3.4 28 72-99 29-56 (235)
292 2p65_A Hypothetical protein PF 94.9 0.042 1.4E-06 48.8 6.4 26 74-99 43-68 (187)
293 2rhm_A Putative kinase; P-loop 94.9 0.016 5.4E-07 52.7 3.5 27 72-98 3-29 (193)
294 2bdt_A BH3686; alpha-beta prot 94.9 0.015 5E-07 53.2 3.3 23 75-97 3-25 (189)
295 2pcj_A ABC transporter, lipopr 94.8 0.012 4.1E-07 56.5 2.8 26 73-98 29-54 (224)
296 3tqc_A Pantothenate kinase; bi 94.8 0.018 6.2E-07 58.7 4.2 28 71-98 89-116 (321)
297 3t61_A Gluconokinase; PSI-biol 94.8 0.015 5.1E-07 53.9 3.2 26 73-98 17-42 (202)
298 2jeo_A Uridine-cytidine kinase 94.8 0.018 6.2E-07 55.4 3.9 27 72-98 23-49 (245)
299 3lnc_A Guanylate kinase, GMP k 94.8 0.011 3.8E-07 56.1 2.4 27 72-98 25-52 (231)
300 2onk_A Molybdate/tungstate ABC 94.8 0.015 5.3E-07 56.5 3.4 24 75-98 25-48 (240)
301 3lw7_A Adenylate kinase relate 94.7 0.016 5.6E-07 51.0 3.2 20 75-94 2-21 (179)
302 1b0u_A Histidine permease; ABC 94.7 0.017 5.7E-07 56.9 3.4 27 72-98 30-56 (262)
303 1g6h_A High-affinity branched- 94.7 0.015 5.1E-07 57.0 3.0 27 73-99 32-58 (257)
304 2yvu_A Probable adenylyl-sulfa 94.6 0.025 8.7E-07 51.6 4.4 28 71-98 10-37 (186)
305 3b85_A Phosphate starvation-in 94.6 0.016 5.4E-07 55.2 3.1 23 75-97 23-45 (208)
306 2eyu_A Twitching motility prot 94.6 0.02 6.9E-07 56.3 3.9 27 72-98 23-49 (261)
307 2cbz_A Multidrug resistance-as 94.6 0.017 5.9E-07 55.9 3.4 28 72-99 29-56 (237)
308 1mv5_A LMRA, multidrug resista 94.6 0.019 6.6E-07 55.6 3.7 28 72-99 26-53 (243)
309 1qhx_A CPT, protein (chloramph 94.6 0.021 7.1E-07 51.4 3.6 25 74-98 3-27 (178)
310 3gfo_A Cobalt import ATP-bindi 94.6 0.016 5.5E-07 57.6 3.1 26 73-98 33-58 (275)
311 1u0l_A Probable GTPase ENGC; p 94.6 0.015 5.2E-07 58.1 2.9 26 73-98 168-193 (301)
312 2v9p_A Replication protein E1; 94.6 0.019 6.5E-07 58.2 3.5 27 72-98 124-150 (305)
313 2pze_A Cystic fibrosis transme 94.5 0.017 5.9E-07 55.6 3.1 27 73-99 33-59 (229)
314 2qt1_A Nicotinamide riboside k 94.5 0.021 7.2E-07 53.0 3.6 28 71-98 18-45 (207)
315 1tev_A UMP-CMP kinase; ploop, 94.5 0.023 7.7E-07 51.5 3.7 24 74-97 3-26 (196)
316 4g1u_C Hemin import ATP-bindin 94.5 0.017 5.7E-07 57.1 3.0 26 73-98 36-61 (266)
317 1ji0_A ABC transporter; ATP bi 94.5 0.017 5.9E-07 55.9 3.0 27 73-99 31-57 (240)
318 4fcw_A Chaperone protein CLPB; 94.5 0.1 3.4E-06 51.1 8.6 28 72-99 45-72 (311)
319 3vaa_A Shikimate kinase, SK; s 94.5 0.023 7.7E-07 52.7 3.7 26 72-97 23-48 (199)
320 3kb2_A SPBC2 prophage-derived 94.5 0.021 7E-07 50.8 3.2 24 75-98 2-25 (173)
321 1cke_A CK, MSSA, protein (cyti 94.5 0.021 7.2E-07 53.5 3.4 25 74-98 5-29 (227)
322 2d2e_A SUFC protein; ABC-ATPas 94.5 0.02 6.8E-07 55.9 3.3 25 73-97 28-52 (250)
323 1jjv_A Dephospho-COA kinase; P 94.4 0.024 8.1E-07 52.5 3.7 23 74-96 2-24 (206)
324 1d2n_A N-ethylmaleimide-sensit 94.4 0.12 4.2E-06 50.0 9.0 27 71-97 61-87 (272)
325 2ff7_A Alpha-hemolysin translo 94.4 0.018 6.2E-07 56.1 3.0 27 73-99 34-60 (247)
326 2plr_A DTMP kinase, probable t 94.4 0.026 8.7E-07 51.9 3.9 25 74-98 4-28 (213)
327 1g3q_A MIND ATPase, cell divis 94.4 0.056 1.9E-06 50.9 6.3 65 118-182 112-177 (237)
328 1kht_A Adenylate kinase; phosp 94.4 0.023 8E-07 51.3 3.5 25 74-98 3-27 (192)
329 2ghi_A Transport protein; mult 94.4 0.021 7.1E-07 56.2 3.4 27 72-98 44-70 (260)
330 3kjh_A CO dehydrogenase/acetyl 94.4 0.05 1.7E-06 51.2 6.0 63 117-179 131-194 (254)
331 2olj_A Amino acid ABC transpor 94.4 0.021 7.2E-07 56.4 3.4 27 72-98 48-74 (263)
332 2zu0_C Probable ATP-dependent 94.3 0.025 8.4E-07 55.8 3.7 26 72-97 44-69 (267)
333 1sgw_A Putative ABC transporte 94.3 0.017 5.9E-07 55.3 2.5 25 74-98 35-59 (214)
334 2pt7_A CAG-ALFA; ATPase, prote 94.3 0.19 6.6E-06 50.9 10.5 25 75-99 172-196 (330)
335 1vpl_A ABC transporter, ATP-bi 94.3 0.023 7.8E-07 55.9 3.4 27 72-98 39-65 (256)
336 4a74_A DNA repair and recombin 94.3 0.021 7.1E-07 53.3 3.0 27 72-98 23-49 (231)
337 1rz3_A Hypothetical protein rb 94.3 0.025 8.5E-07 52.7 3.5 27 72-98 20-46 (201)
338 2yv5_A YJEQ protein; hydrolase 94.3 0.022 7.5E-07 57.1 3.3 25 73-98 164-188 (302)
339 2qi9_C Vitamin B12 import ATP- 94.3 0.021 7.3E-07 55.9 3.1 26 73-98 25-50 (249)
340 2ehv_A Hypothetical protein PH 94.3 0.023 7.7E-07 53.7 3.2 25 72-96 28-52 (251)
341 2ixe_A Antigen peptide transpo 94.2 0.023 7.9E-07 56.2 3.4 28 72-99 43-70 (271)
342 1odf_A YGR205W, hypothetical 3 94.2 0.03 1E-06 56.1 4.1 29 71-99 28-56 (290)
343 3ec2_A DNA replication protein 94.2 0.02 6.8E-07 52.0 2.6 25 74-98 38-62 (180)
344 1sq5_A Pantothenate kinase; P- 94.2 0.026 8.9E-07 56.5 3.7 27 72-98 78-104 (308)
345 2ihy_A ABC transporter, ATP-bi 94.2 0.022 7.5E-07 56.7 3.1 26 73-98 46-71 (279)
346 2chg_A Replication factor C sm 94.2 0.2 7E-06 45.3 9.4 22 77-98 41-62 (226)
347 3n70_A Transport activator; si 94.1 0.079 2.7E-06 46.7 6.3 25 75-99 25-49 (145)
348 3nh6_A ATP-binding cassette SU 94.1 0.021 7.3E-07 57.7 2.9 28 72-99 78-105 (306)
349 2nq2_C Hypothetical ABC transp 94.1 0.023 7.9E-07 55.6 3.0 27 73-99 30-56 (253)
350 2yz2_A Putative ABC transporte 94.1 0.027 9.1E-07 55.5 3.4 27 72-98 31-57 (266)
351 2c95_A Adenylate kinase 1; tra 94.0 0.029 9.9E-07 51.1 3.3 25 73-97 8-32 (196)
352 2v54_A DTMP kinase, thymidylat 94.0 0.033 1.1E-06 51.1 3.7 26 73-98 3-28 (204)
353 2i3b_A HCR-ntpase, human cance 94.0 0.025 8.6E-07 53.0 2.9 23 76-98 3-25 (189)
354 3cm0_A Adenylate kinase; ATP-b 94.0 0.031 1.1E-06 50.6 3.4 24 74-97 4-27 (186)
355 2cdn_A Adenylate kinase; phosp 94.0 0.036 1.2E-06 51.2 3.9 28 71-98 17-44 (201)
356 3syl_A Protein CBBX; photosynt 93.9 0.13 4.6E-06 50.2 8.2 27 72-98 65-91 (309)
357 1aky_A Adenylate kinase; ATP:A 93.9 0.034 1.2E-06 52.2 3.6 26 73-98 3-28 (220)
358 1nn5_A Similar to deoxythymidy 93.9 0.032 1.1E-06 51.6 3.3 26 73-98 8-33 (215)
359 1nks_A Adenylate kinase; therm 93.9 0.031 1.1E-06 50.4 3.3 24 75-98 2-25 (194)
360 1uf9_A TT1252 protein; P-loop, 93.9 0.036 1.2E-06 50.7 3.7 26 72-97 6-31 (203)
361 1np6_A Molybdopterin-guanine d 93.8 0.037 1.3E-06 51.3 3.7 25 74-98 6-30 (174)
362 4ido_A Atlastin-1; GTPase, GTP 93.8 0.058 2E-06 57.6 5.6 26 71-96 64-89 (457)
363 3trf_A Shikimate kinase, SK; a 93.8 0.036 1.2E-06 50.2 3.4 24 74-97 5-28 (185)
364 1ukz_A Uridylate kinase; trans 93.7 0.044 1.5E-06 50.5 4.0 27 72-98 13-39 (203)
365 1gvn_B Zeta; postsegregational 93.7 0.04 1.4E-06 54.8 4.0 28 71-98 30-57 (287)
366 3tlx_A Adenylate kinase 2; str 93.7 0.042 1.4E-06 53.0 4.0 27 72-98 27-53 (243)
367 2jaq_A Deoxyguanosine kinase; 93.7 0.037 1.3E-06 50.5 3.4 23 76-98 2-24 (205)
368 2pjz_A Hypothetical protein ST 93.6 0.032 1.1E-06 55.0 3.1 25 74-98 30-54 (263)
369 1ex7_A Guanylate kinase; subst 93.6 0.031 1.1E-06 52.5 2.8 22 76-97 3-24 (186)
370 2vp4_A Deoxynucleoside kinase; 93.6 0.039 1.3E-06 52.5 3.6 27 71-97 17-43 (230)
371 2wwf_A Thymidilate kinase, put 93.6 0.035 1.2E-06 51.3 3.1 26 73-98 9-34 (212)
372 1sxj_A Activator 1 95 kDa subu 93.6 0.23 8E-06 53.2 10.0 27 72-98 75-101 (516)
373 2if2_A Dephospho-COA kinase; a 93.6 0.034 1.1E-06 51.3 2.9 22 75-96 2-23 (204)
374 2bwj_A Adenylate kinase 5; pho 93.6 0.035 1.2E-06 50.6 3.0 24 74-97 12-35 (199)
375 3umf_A Adenylate kinase; rossm 93.6 0.045 1.5E-06 52.6 3.9 28 71-98 26-53 (217)
376 2qz4_A Paraplegin; AAA+, SPG7, 93.6 0.55 1.9E-05 44.5 11.6 28 71-98 36-63 (262)
377 3b9p_A CG5977-PA, isoform A; A 93.6 0.13 4.4E-06 50.2 7.3 27 72-98 52-78 (297)
378 3hr8_A Protein RECA; alpha and 93.5 0.19 6.5E-06 51.8 8.8 28 72-99 59-86 (356)
379 2pez_A Bifunctional 3'-phospho 93.5 0.049 1.7E-06 49.3 3.9 27 72-98 3-29 (179)
380 3jvv_A Twitching mobility prot 93.5 0.044 1.5E-06 56.5 3.9 26 73-98 122-147 (356)
381 1qf9_A UMP/CMP kinase, protein 93.5 0.041 1.4E-06 49.6 3.3 25 73-97 5-29 (194)
382 3tui_C Methionine import ATP-b 93.4 0.043 1.5E-06 57.0 3.7 27 72-98 52-78 (366)
383 4b4t_L 26S protease subunit RP 93.4 0.076 2.6E-06 56.4 5.7 29 70-98 211-239 (437)
384 1zak_A Adenylate kinase; ATP:A 93.4 0.034 1.2E-06 52.3 2.7 26 73-98 4-29 (222)
385 3fvq_A Fe(3+) IONS import ATP- 93.4 0.035 1.2E-06 57.5 3.0 26 73-98 29-54 (359)
386 2ewv_A Twitching motility prot 93.4 0.044 1.5E-06 56.6 3.8 28 72-99 134-161 (372)
387 2bbs_A Cystic fibrosis transme 93.4 0.036 1.2E-06 55.5 3.0 27 72-98 62-88 (290)
388 1zd8_A GTP:AMP phosphotransfer 93.4 0.04 1.4E-06 52.1 3.1 26 73-98 6-31 (227)
389 2vli_A Antibiotic resistance p 93.4 0.036 1.2E-06 49.9 2.7 26 73-98 4-29 (183)
390 1xwi_A SKD1 protein; VPS4B, AA 93.3 0.12 4.1E-06 52.0 6.8 28 71-98 42-69 (322)
391 1z47_A CYSA, putative ABC-tran 93.3 0.041 1.4E-06 56.8 3.3 26 73-98 40-65 (355)
392 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.051 1.8E-06 52.8 3.9 25 73-97 3-27 (260)
393 1y63_A LMAJ004144AAA protein; 93.3 0.051 1.7E-06 49.8 3.6 26 72-97 8-33 (184)
394 2gza_A Type IV secretion syste 93.3 0.047 1.6E-06 56.1 3.7 25 75-99 176-200 (361)
395 3rlf_A Maltose/maltodextrin im 93.3 0.043 1.5E-06 57.3 3.4 27 73-99 28-54 (381)
396 4e22_A Cytidylate kinase; P-lo 93.3 0.05 1.7E-06 52.7 3.7 25 73-97 26-50 (252)
397 2p5t_B PEZT; postsegregational 93.3 0.04 1.4E-06 53.3 3.0 28 71-98 29-56 (253)
398 2f1r_A Molybdopterin-guanine d 93.2 0.022 7.4E-07 52.7 0.9 26 75-100 3-28 (171)
399 1m7g_A Adenylylsulfate kinase; 93.2 0.058 2E-06 50.4 3.9 27 72-98 23-49 (211)
400 1g29_1 MALK, maltose transport 93.2 0.045 1.5E-06 56.8 3.3 27 73-99 28-54 (372)
401 2yyz_A Sugar ABC transporter, 93.1 0.051 1.8E-06 56.2 3.7 26 73-98 28-53 (359)
402 1vht_A Dephospho-COA kinase; s 93.1 0.064 2.2E-06 50.1 4.1 24 73-96 3-26 (218)
403 2it1_A 362AA long hypothetical 93.1 0.053 1.8E-06 56.1 3.7 27 73-99 28-54 (362)
404 2x8a_A Nuclear valosin-contain 93.0 0.058 2E-06 53.2 3.7 25 74-98 44-68 (274)
405 3lda_A DNA repair protein RAD5 93.0 0.4 1.4E-05 50.2 10.2 25 72-96 176-200 (400)
406 4b4t_K 26S protease regulatory 92.9 0.1 3.5E-06 55.3 5.7 29 70-98 202-230 (428)
407 2v1u_A Cell division control p 92.9 0.25 8.6E-06 49.3 8.3 27 72-98 42-68 (387)
408 3iij_A Coilin-interacting nucl 92.9 0.053 1.8E-06 49.1 3.0 25 74-98 11-35 (180)
409 1v43_A Sugar-binding transport 92.9 0.059 2E-06 56.0 3.7 26 73-98 36-61 (372)
410 1xjc_A MOBB protein homolog; s 92.8 0.062 2.1E-06 49.8 3.5 25 74-98 4-28 (169)
411 2w0m_A SSO2452; RECA, SSPF, un 92.8 0.055 1.9E-06 50.1 3.2 27 72-98 21-47 (235)
412 1gtv_A TMK, thymidylate kinase 92.8 0.023 8E-07 52.5 0.5 23 76-98 2-24 (214)
413 1ixz_A ATP-dependent metallopr 92.8 0.065 2.2E-06 51.3 3.7 24 75-98 50-73 (254)
414 3pxg_A Negative regulator of g 92.7 0.096 3.3E-06 55.6 5.1 65 75-147 202-274 (468)
415 3ozx_A RNAse L inhibitor; ATP 92.6 0.074 2.5E-06 57.8 4.3 28 71-98 22-49 (538)
416 3kta_A Chromosome segregation 92.5 0.065 2.2E-06 48.4 3.1 24 74-97 26-49 (182)
417 1lw7_A Transcriptional regulat 92.5 0.052 1.8E-06 55.5 2.7 26 74-99 170-195 (365)
418 1in4_A RUVB, holliday junction 92.5 0.061 2.1E-06 54.3 3.2 26 73-98 50-75 (334)
419 3fb4_A Adenylate kinase; psych 92.5 0.068 2.3E-06 49.7 3.3 23 76-98 2-24 (216)
420 4eaq_A DTMP kinase, thymidylat 92.5 0.087 3E-06 50.5 4.1 28 72-99 24-51 (229)
421 3gd7_A Fusion complex of cysti 92.4 0.057 2E-06 56.4 3.0 27 72-98 45-71 (390)
422 2pbr_A DTMP kinase, thymidylat 92.4 0.073 2.5E-06 48.1 3.3 23 76-98 2-24 (195)
423 2z0h_A DTMP kinase, thymidylat 92.4 0.071 2.4E-06 48.4 3.3 23 76-98 2-24 (197)
424 4b4t_M 26S protease regulatory 92.4 0.12 3.9E-06 54.9 5.3 30 69-98 210-239 (434)
425 1p9r_A General secretion pathw 92.4 0.076 2.6E-06 56.0 3.9 26 73-98 166-191 (418)
426 3be4_A Adenylate kinase; malar 92.4 0.058 2E-06 50.7 2.7 26 73-98 4-29 (217)
427 2iyv_A Shikimate kinase, SK; t 92.3 0.059 2E-06 48.8 2.6 23 75-97 3-25 (184)
428 3d31_A Sulfate/molybdate ABC t 92.3 0.052 1.8E-06 55.9 2.4 26 73-98 25-50 (348)
429 2qp9_X Vacuolar protein sortin 92.3 0.22 7.7E-06 50.7 7.2 27 72-98 82-108 (355)
430 1uj2_A Uridine-cytidine kinase 92.3 0.086 2.9E-06 50.8 3.8 27 72-98 20-46 (252)
431 3dl0_A Adenylate kinase; phosp 92.3 0.075 2.6E-06 49.5 3.3 23 76-98 2-24 (216)
432 1svm_A Large T antigen; AAA+ f 92.2 0.079 2.7E-06 55.1 3.7 28 71-98 166-193 (377)
433 1lv7_A FTSH; alpha/beta domain 92.2 0.15 5.2E-06 48.8 5.5 28 71-98 42-69 (257)
434 1ltq_A Polynucleotide kinase; 92.2 0.085 2.9E-06 51.7 3.7 24 74-97 2-25 (301)
435 2ze6_A Isopentenyl transferase 92.1 0.085 2.9E-06 51.2 3.6 24 75-98 2-25 (253)
436 4b4t_J 26S protease regulatory 92.1 0.13 4.3E-06 54.2 5.0 29 70-98 178-206 (405)
437 2f6r_A COA synthase, bifunctio 92.0 0.087 3E-06 52.0 3.6 26 71-96 72-97 (281)
438 1via_A Shikimate kinase; struc 92.0 0.075 2.6E-06 47.9 2.9 22 76-97 6-27 (175)
439 2ph1_A Nucleotide-binding prot 92.0 0.31 1E-05 47.1 7.4 64 117-180 128-194 (262)
440 1qvr_A CLPB protein; coiled co 92.0 0.27 9.3E-06 56.0 8.1 24 75-98 192-215 (854)
441 1ak2_A Adenylate kinase isoenz 92.0 0.096 3.3E-06 49.7 3.7 27 72-98 14-40 (233)
442 1oxx_K GLCV, glucose, ABC tran 92.0 0.048 1.6E-06 56.2 1.7 26 73-98 30-55 (353)
443 2cvh_A DNA repair and recombin 91.9 0.097 3.3E-06 48.3 3.6 25 72-96 18-42 (220)
444 1iy2_A ATP-dependent metallopr 91.9 0.097 3.3E-06 51.0 3.8 24 75-98 74-97 (278)
445 3b5x_A Lipid A export ATP-bind 91.9 0.11 3.9E-06 56.6 4.6 27 73-99 368-394 (582)
446 1cr0_A DNA primase/helicase; R 91.8 0.087 3E-06 51.8 3.3 28 72-99 33-60 (296)
447 1e6c_A Shikimate kinase; phosp 91.8 0.085 2.9E-06 47.0 2.9 23 75-97 3-25 (173)
448 3r20_A Cytidylate kinase; stru 91.8 0.095 3.3E-06 50.9 3.5 26 73-98 8-33 (233)
449 1nij_A Hypothetical protein YJ 91.7 0.077 2.6E-06 53.4 2.8 25 74-98 4-28 (318)
450 2oap_1 GSPE-2, type II secreti 91.7 0.068 2.3E-06 57.7 2.5 24 75-98 261-284 (511)
451 3t15_A Ribulose bisphosphate c 91.7 0.1 3.6E-06 51.7 3.7 29 70-98 32-60 (293)
452 1n0w_A DNA repair protein RAD5 91.6 0.094 3.2E-06 49.2 3.1 27 72-98 22-48 (243)
453 2zan_A Vacuolar protein sortin 91.6 0.2 6.9E-06 52.7 6.0 27 72-98 165-191 (444)
454 1hqc_A RUVB; extended AAA-ATPa 91.6 0.34 1.2E-05 47.6 7.3 76 73-166 37-117 (324)
455 2pt5_A Shikimate kinase, SK; a 91.5 0.11 3.8E-06 46.0 3.4 22 76-97 2-23 (168)
456 3b60_A Lipid A export ATP-bind 91.5 0.11 3.7E-06 56.7 3.9 27 73-99 368-394 (582)
457 1wcv_1 SOJ, segregation protei 91.4 0.76 2.6E-05 44.0 9.5 65 117-181 111-182 (257)
458 3qf4_B Uncharacterized ABC tra 91.4 0.11 3.8E-06 56.9 3.9 29 72-100 379-407 (598)
459 2qgz_A Helicase loader, putati 91.3 0.13 4.5E-06 51.6 4.0 26 74-99 152-177 (308)
460 1yqt_A RNAse L inhibitor; ATP- 91.3 0.1 3.5E-06 56.6 3.4 27 72-98 45-71 (538)
461 3sr0_A Adenylate kinase; phosp 91.2 0.11 3.7E-06 49.3 3.1 23 76-98 2-24 (206)
462 3euj_A Chromosome partition pr 91.2 0.1 3.6E-06 56.0 3.4 24 75-98 30-53 (483)
463 1f2t_A RAD50 ABC-ATPase; DNA d 91.2 0.15 5E-06 45.6 3.8 26 72-97 21-46 (149)
464 2xb4_A Adenylate kinase; ATP-b 91.1 0.12 4.1E-06 48.9 3.4 23 76-98 2-24 (223)
465 2npi_A Protein CLP1; CLP1-PCF1 91.0 0.091 3.1E-06 56.0 2.7 26 73-98 137-162 (460)
466 1q3t_A Cytidylate kinase; nucl 91.0 0.14 4.8E-06 48.7 3.7 26 72-97 14-39 (236)
467 1e4v_A Adenylate kinase; trans 90.9 0.11 3.8E-06 48.5 2.9 23 76-98 2-24 (214)
468 4a82_A Cystic fibrosis transme 90.9 0.092 3.2E-06 57.2 2.6 28 73-100 366-393 (578)
469 4b4t_H 26S protease regulatory 90.9 0.2 6.9E-06 53.5 5.1 29 70-98 239-267 (467)
470 3vfd_A Spastin; ATPase, microt 90.9 0.16 5.6E-06 52.1 4.4 27 72-98 146-172 (389)
471 3pxi_A Negative regulator of g 90.8 1.3 4.4E-05 49.6 11.9 24 75-98 522-545 (758)
472 4b4t_I 26S protease regulatory 90.8 0.26 8.9E-06 52.3 5.9 30 69-98 211-240 (437)
473 1r6b_X CLPA protein; AAA+, N-t 90.7 2 6.8E-05 47.9 13.3 27 72-98 486-512 (758)
474 3j16_B RLI1P; ribosome recycli 90.7 0.12 4.2E-06 56.9 3.4 27 72-98 101-127 (608)
475 1njg_A DNA polymerase III subu 90.6 0.16 5.4E-06 46.4 3.6 25 74-98 45-69 (250)
476 2yl4_A ATP-binding cassette SU 90.6 0.11 3.9E-06 56.7 3.0 27 73-99 369-395 (595)
477 1zuh_A Shikimate kinase; alpha 90.6 0.16 5.3E-06 45.3 3.4 23 75-97 8-30 (168)
478 3qf4_A ABC transporter, ATP-bi 90.5 0.12 4.1E-06 56.5 3.1 28 73-100 368-395 (587)
479 3cf0_A Transitional endoplasmi 90.5 0.15 5.2E-06 50.5 3.6 28 71-98 46-73 (301)
480 1ojl_A Transcriptional regulat 90.4 0.63 2.2E-05 46.3 8.1 26 74-99 25-50 (304)
481 3h4m_A Proteasome-activating n 90.4 0.16 5.4E-06 49.2 3.5 28 71-98 48-75 (285)
482 2obl_A ESCN; ATPase, hydrolase 90.4 0.13 4.4E-06 52.7 3.0 26 74-99 71-96 (347)
483 3m6a_A ATP-dependent protease 90.3 0.29 9.8E-06 53.0 5.8 26 73-98 107-132 (543)
484 1yqt_A RNAse L inhibitor; ATP- 90.3 0.14 4.9E-06 55.5 3.4 26 73-98 311-336 (538)
485 3pfi_A Holliday junction ATP-d 90.3 0.68 2.3E-05 45.9 8.2 26 73-98 54-79 (338)
486 3ozx_A RNAse L inhibitor; ATP 90.3 0.13 4.5E-06 55.9 3.1 26 73-98 293-318 (538)
487 2orw_A Thymidine kinase; TMTK, 90.1 0.74 2.5E-05 42.5 7.7 23 75-97 4-26 (184)
488 1r6b_X CLPA protein; AAA+, N-t 90.0 0.39 1.3E-05 53.6 6.8 26 73-98 206-231 (758)
489 2bjv_A PSP operon transcriptio 90.0 0.72 2.5E-05 44.2 7.9 25 75-99 30-54 (265)
490 3ug7_A Arsenical pump-driving 90.0 14 0.00048 37.3 17.9 43 139-181 237-279 (349)
491 2ocp_A DGK, deoxyguanosine kin 90.0 0.18 6.2E-06 48.0 3.5 25 74-98 2-26 (241)
492 1p5z_B DCK, deoxycytidine kina 89.9 0.13 4.3E-06 49.8 2.3 27 72-98 22-48 (263)
493 3qf7_A RAD50; ABC-ATPase, ATPa 89.8 0.18 6.2E-06 51.8 3.6 25 73-97 22-46 (365)
494 4ag6_A VIRB4 ATPase, type IV s 89.8 0.32 1.1E-05 49.9 5.4 47 74-135 35-81 (392)
495 3nwj_A ATSK2; P loop, shikimat 89.8 0.16 5.5E-06 49.6 3.0 24 74-97 48-71 (250)
496 3bk7_A ABC transporter ATP-bin 89.6 0.17 5.8E-06 55.8 3.4 26 73-98 381-406 (607)
497 3pxi_A Negative regulator of g 89.6 0.27 9.3E-06 55.1 5.1 26 73-98 200-225 (758)
498 3cf2_A TER ATPase, transitiona 89.5 0.55 1.9E-05 53.5 7.5 36 63-98 227-262 (806)
499 3ake_A Cytidylate kinase; CMP 89.5 0.2 7E-06 45.8 3.4 22 76-97 4-25 (208)
500 1ihu_A Arsenical pump-driving 89.5 2.2 7.4E-05 46.3 12.0 41 141-181 200-240 (589)
No 1
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=1.7e-21 Score=204.89 Aligned_cols=229 Identities=17% Similarity=0.182 Sum_probs=162.1
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCcccc------------ccccEEEE-----------ecCceeEEEEcCCC
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE------------VRGPITIV-----------SGKQRRLQFVECPN 127 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~------------~~G~iti~-----------~~~~~rl~fIDtPG 127 (519)
..++++|+++|++|+|||||+++|++..+...... ....++.. ......++|+||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 45678999999999999999999998532111100 00111110 01127899999999
Q ss_pred C--ch-hHHHHhhccCEEEEEEeCCCCC-cccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc
Q 010060 128 D--IN-GMIDCAKIADLALLLIDGSYGF-EMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY 203 (519)
Q Consensus 128 d--l~-smld~ak~ADlVLLVVDas~g~-e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~ 203 (519)
+ +. .|+.++..||++|||+|++.+. ..++.+++..+...+.+.+|+|+||+|+.. ........+.+.+.+.....
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~-~~~~~~~~~~i~~~l~~~~~ 163 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS-KEEALSQYRQIKQFTKGTWA 163 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC-HHHHHHHHHHHHHHHTTSTT
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc-hHHHHHHHHHHHHHHHhhCC
Confidence 6 33 4888999999999999999987 778889999888888877888999999985 33445555566665544445
Q ss_pred CCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEe
Q 010060 204 DGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNL 283 (519)
Q Consensus 204 ~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~L 283 (519)
...++|++||++| .++..|+..|....+.+.......+.+.+++..++..+.. +....+..+++|+|..+.+
T Consensus 164 ~~~~ii~vSA~~g-----~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~---~~~~~~G~v~~g~v~~G~~ 235 (403)
T 3sjy_A 164 ENVPIIPVSALHK-----INIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGT---QFNELKGGVIGGSIIQGLF 235 (403)
T ss_dssp TTCCEEECBTTTT-----BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTC---CSSSCCCCEEEEEEEESCE
T ss_pred CCCEEEEEECCCC-----cChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCc---ccccCcCcEEEEEEEeCEE
Confidence 6789999999977 6788899888887776655544556678888777644321 0111234568999999999
Q ss_pred ecCcEEEE-ecCC------------CeEEEeeecCCCC
Q 010060 284 KKGIKVHI-AGVG------------DYSLAGVTGLADP 308 (519)
Q Consensus 284 k~~~~VhI-pG~G------------df~I~~I~~l~dP 308 (519)
++|+.|.+ |+.. ...|++|.....|
T Consensus 236 ~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 273 (403)
T 3sjy_A 236 KVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEE 273 (403)
T ss_dssp ETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEE
T ss_pred ecCCEEEEeCCcccccccccccccccEEEEEEEECCEE
Confidence 99999987 4432 2467777654433
No 2
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.88 E-value=1.2e-21 Score=205.68 Aligned_cols=222 Identities=20% Similarity=0.212 Sum_probs=161.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC--------------ccccccccEEE------EecCceeEEEEcCCCC--ch
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH--------------NVPEVRGPITI------VSGKQRRLQFVECPND--IN 130 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--------------~v~~~~G~iti------~~~~~~rl~fIDtPGd--l~ 130 (519)
++++|+++|++|+|||||+++|++..... ......| +|+ +......++||||||+ +.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g-iTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARG-ITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETT-EEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcC-cEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 45799999999999999999999852110 0001122 443 2345688999999996 33
Q ss_pred -hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CCce
Q 010060 131 -GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DGAK 207 (519)
Q Consensus 131 -smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~~k 207 (519)
.|+.++..||++|||+|++.+...++.+++..+...|+|.+|+|+||+|+..+...+..+.+.++..+....+ ...+
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETP 160 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCc
Confidence 4788899999999999999999999999999998899998777999999986444444455555554432222 2478
Q ss_pred EEEEecccCC------cCChhHHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccccccCCCCCceEEEEEEEEeE
Q 010060 208 LFYLSGLIHG------KYSKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGC 281 (519)
Q Consensus 208 Vf~lSAl~g~------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~ 281 (519)
+|++||++|. || ...+..|+..|....+.|..+....+++.++++..++ . ...+++|+|..+
T Consensus 161 ~i~~SA~~g~n~~~~~~~-~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~----------~-~G~v~~g~v~~G 228 (397)
T 1d2e_A 161 IIVGSALCALEQRDPELG-LKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIP----------G-RGTVVTGTLERG 228 (397)
T ss_dssp EEECCHHHHHTTCCTTTT-HHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEET----------T-TEEEEEEECCBS
T ss_pred EEEeehhhcccccCCCcc-CCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeC----------C-ceEEEEEEEeec
Confidence 9999999853 23 1227888899888777666554444556677776552 1 245689999999
Q ss_pred EeecCcEEEEecCC---CeEEEeeecCCC
Q 010060 282 NLKKGIKVHIAGVG---DYSLAGVTGLAD 307 (519)
Q Consensus 282 ~Lk~~~~VhIpG~G---df~I~~I~~l~d 307 (519)
.|++|+.|.+.|.+ ...|++|.....
T Consensus 229 ~l~~gd~v~~~~~~~~~~~~V~~i~~~~~ 257 (397)
T 1d2e_A 229 ILKKGDECEFLGHSKNIRTVVTGIEMFHK 257 (397)
T ss_dssp EEETTCEEEEEETTEEEEEEEEEEEETTE
T ss_pred eEeCCCEEEEeCCCCCeEEEEEEEEECCc
Confidence 99999999988875 457777765543
No 3
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=2.5e-21 Score=203.85 Aligned_cols=212 Identities=23% Similarity=0.244 Sum_probs=151.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC-ccccccc-----cE---EEEe----------------cC----ceeEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRG-----PI---TIVS----------------GK----QRRLQF 122 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G-----~i---ti~~----------------~~----~~rl~f 122 (519)
.+.++|+++|++|+|||||+++|++..+.. .....+| .+ .+.. +. ...++|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 556899999999999999999999753211 1110111 01 1100 00 268999
Q ss_pred EcCCCC--ch-hHHHHhhccCEEEEEEeCCCCC-cccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhh
Q 010060 123 VECPND--IN-GMIDCAKIADLALLLIDGSYGF-EMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRF 198 (519)
Q Consensus 123 IDtPGd--l~-smld~ak~ADlVLLVVDas~g~-e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f 198 (519)
|||||+ +. .|+..+..||++|||+|++.++ ..++.+++..+...+++.+|+|+||+|+... .......+.+++++
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~-~~~~~~~~~i~~~l 166 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK-EKALENYRQIKEFI 166 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH-HHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH-HHHHHHHHHHHHHH
Confidence 999996 33 4888899999999999999997 7889999988888898878889999999853 33334445555555
Q ss_pred hhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccccccCCCCCceEEEEEEE
Q 010060 199 WTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYL 278 (519)
Q Consensus 199 ~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v~GyV 278 (519)
........++|++||++| .++..|+..|....+.|..+....+.+.+++..++..|... .. ...| .+++|+|
T Consensus 167 ~~~~~~~~~~i~vSA~~g-----~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~-~~-~~~G-~v~~g~v 238 (410)
T 1kk1_A 167 EGTVAENAPIIPISALHG-----ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTP-PE-KLVG-GVLDGSI 238 (410)
T ss_dssp TTSTTTTCCEEECBTTTT-----BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC------CCCC-CEEEEEE
T ss_pred HhcCcCCCeEEEeeCCCC-----CCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCCCcc-cc-CCce-EEEEEEE
Confidence 433345789999999977 67888999998877777666555667888887766443210 00 1123 4689999
Q ss_pred EeEEeecCcEEEEe
Q 010060 279 RGCNLKKGIKVHIA 292 (519)
Q Consensus 279 RG~~Lk~~~~VhIp 292 (519)
..+.|++|+.+.+.
T Consensus 239 ~~G~l~~gd~v~~~ 252 (410)
T 1kk1_A 239 VQGKLKVGDEIEIR 252 (410)
T ss_dssp EESCEETTCEEEEE
T ss_pred EeCeEeeCCEEEEC
Confidence 99999999999774
No 4
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.86 E-value=1.3e-21 Score=215.75 Aligned_cols=225 Identities=19% Similarity=0.268 Sum_probs=141.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc---cCc--------------------ccc-----ccccEEEE------ecC
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT---KHN--------------------VPE-----VRGPITIV------SGK 116 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~~--------------------v~~-----~~G~iti~------~~~ 116 (519)
..+.++|+|+|++|+|||||+++|++.+. ... +.. ...++|+. ...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 45668999999999999999999986420 000 000 01123332 234
Q ss_pred ceeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCC-----C--cccHHHHHHHHHhcCCCeEEEEEEccCCCC-CHH
Q 010060 117 QRRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYG-----F--EMETFEFLNLMQNHGLPRVMGVLTHLDKFK-DVK 185 (519)
Q Consensus 117 ~~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g-----~--e~et~e~L~~L~~~GiP~VI~VlNKlDl~~-~~k 185 (519)
+..++||||||+ +. .|+.++..||++|||||++.+ + ..++.+++..+...|+|.+|+|+||+|++. ...
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHH
Confidence 578999999996 33 478889999999999999874 4 889999999999999998888999999985 455
Q ss_pred HHHHHHHHHHHhh-hhhcc--CCceEEEEecccCCcCChh---------HHHHHHHHHHhhcCCCCccccCCCe-EEEEE
Q 010060 186 KLRKTKQRLKHRF-WTEIY--DGAKLFYLSGLIHGKYSKR---------EIRNLARFISVMKFPPLSWRTSHPY-VLVDR 252 (519)
Q Consensus 186 ~l~~~kk~Lk~~f-~~e~~--~~~kVf~lSAl~g~~Y~~~---------ei~~LlR~I~~~~~r~~~wR~~~PY-vladr 252 (519)
.+..+.+.+..++ ....+ ...++|++||++|...... ....|+..|....+ +.. ....|+ +.+++
T Consensus 334 ~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~-~~~~p~r~~v~~ 411 (592)
T 3mca_A 334 RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEK-PYRKPLRLSIDD 411 (592)
T ss_dssp HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSC-TTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccc-cccccchheeeE
Confidence 6666777777655 22222 2458999999998522110 01145566655444 222 233455 55565
Q ss_pred EEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecCCCCC
Q 010060 253 FEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGLADPC 309 (519)
Q Consensus 253 ~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l~dP~ 309 (519)
+..+ . +.++++|+|..+.|++|+.|.|.+.| ...|++|.....|+
T Consensus 412 v~~~-~-----------~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~ 457 (592)
T 3mca_A 412 VYRS-P-----------RSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPS 457 (592)
T ss_dssp EEEE-T-----------TEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCS
T ss_pred EEec-C-----------CeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccC
Confidence 5433 1 34678999999999999999987665 67899998755444
No 5
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=4e-21 Score=202.32 Aligned_cols=212 Identities=21% Similarity=0.258 Sum_probs=142.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEE---------Ee----------------cC----ceeEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI---------VS----------------GK----QRRLQF 122 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti---------~~----------------~~----~~rl~f 122 (519)
.+.++|+++|++|+|||||+++|++..+.........++|+ .. +. ...++|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45689999999999999999999975321110000011111 00 00 268999
Q ss_pred EcCCCC--ch-hHHHHhhccCEEEEEEeCCCCC-cccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhh
Q 010060 123 VECPND--IN-GMIDCAKIADLALLLIDGSYGF-EMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRF 198 (519)
Q Consensus 123 IDtPGd--l~-smld~ak~ADlVLLVVDas~g~-e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f 198 (519)
|||||+ +. .|+..+..||++|||+|++.++ ..++.+++..+...+++.+|+|+||+|+..... .....+.+++++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~-~~~~~~~i~~~l 164 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ-AEENYEQIKEFV 164 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT-TTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH-HHHHHHHHHHHH
Confidence 999996 33 3778889999999999999987 788999998888889877888999999985321 112223333333
Q ss_pred hhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeEEEEEEEecCCccccccCCCCCceEEEEEEE
Q 010060 199 WTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYVLVDRFEDVTPPERVRMNNKCDRNVTIYGYL 278 (519)
Q Consensus 199 ~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYvladr~edit~~~~i~~~~~~~~~l~v~GyV 278 (519)
........++|++||++| .++..|+..|....+.+..+....+.+.+++.+++..+.. ... . .+..+++|+|
T Consensus 165 ~~~~~~~~~~i~vSA~~g-----~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~-~~~-~-~~G~v~~g~v 236 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHE-----ANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGT-EIK-D-LKGGVLGGAI 236 (408)
T ss_dssp TTSTTTTCCEEEC-----------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSC-CGG-G-CCCCEEEEEE
T ss_pred hhcCCCCCeEEEeeCCCC-----CCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCCc-ccc-c-CceeEEEEEE
Confidence 322345679999999977 6788899888887776655555556677888777644321 000 1 1234789999
Q ss_pred EeEEeecCcEEEEe
Q 010060 279 RGCNLKKGIKVHIA 292 (519)
Q Consensus 279 RG~~Lk~~~~VhIp 292 (519)
..+.|++|+.|.+.
T Consensus 237 ~~G~l~~gd~v~~~ 250 (408)
T 1s0u_A 237 IQGVFKVGDEIEIR 250 (408)
T ss_dssp EESCEETTCEEEEE
T ss_pred EECeEecCCEEEEc
Confidence 99999999999873
No 6
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.86 E-value=2e-20 Score=196.58 Aligned_cols=226 Identities=21% Similarity=0.256 Sum_probs=156.9
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCc---------c------ccccc-----cEEEEecCceeEEEEcCCCC--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN---------V------PEVRG-----PITIVSGKQRRLQFVECPND-- 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~---------v------~~~~G-----~iti~~~~~~rl~fIDtPGd-- 128 (519)
..+.++|+++|++|+|||||+++|++...... . ....| ....+......++||||||+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 34568999999999999999999998421100 0 00112 01113445688999999996
Q ss_pred ch-hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CC
Q 010060 129 IN-GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DG 205 (519)
Q Consensus 129 l~-smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~ 205 (519)
+. .++.++..||++|||+|++.+...++.+++..+...++|.+|+|+||+|+..+...+..+...+...+....+ ..
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDE 167 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 33 3788899999999999999999889999999999899997777999999986444444445555554432222 24
Q ss_pred ceEEEEecccCCcC-----------Ch--hHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccccCCCCCce
Q 010060 206 AKLFYLSGLIHGKY-----------SK--REIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRN 271 (519)
Q Consensus 206 ~kVf~lSAl~g~~Y-----------~~--~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~ 271 (519)
.++|++||++|... +. ..+..|+..|....+.|... ...|+ +.++++..++ . ..
T Consensus 168 ~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~-~~~p~~~~v~~v~~~~----------~-~G 235 (405)
T 2c78_A 168 VPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRD-VDKPFLMPVEDVFTIT----------G-RG 235 (405)
T ss_dssp SCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCC-CSSCCEEECCEEEEET----------T-TE
T ss_pred CCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCC-CCCCcEEEEEEEEEcC----------C-Cc
Confidence 78999999987210 00 12677888887766655432 23455 4455555442 1 23
Q ss_pred EEEEEEEEeEEeecCcEEEEecCCC----eEEEeeecCCCC
Q 010060 272 VTIYGYLRGCNLKKGIKVHIAGVGD----YSLAGVTGLADP 308 (519)
Q Consensus 272 l~v~GyVRG~~Lk~~~~VhIpG~Gd----f~I~~I~~l~dP 308 (519)
.+++|+|..+.|++|+.|.+.+.++ ..|++|.....|
T Consensus 236 ~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~ 276 (405)
T 2c78_A 236 TVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKT 276 (405)
T ss_dssp EEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEE
T ss_pred eEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcc
Confidence 5679999999999999999988874 678888765433
No 7
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=6.2e-20 Score=195.47 Aligned_cols=220 Identities=17% Similarity=0.168 Sum_probs=147.8
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc---cCc--------------------cc-----cccccEEE------EecC
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT---KHN--------------------VP-----EVRGPITI------VSGK 116 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~~--------------------v~-----~~~G~iti------~~~~ 116 (519)
..+.++|+++|++|+|||||+++|++.+. ... +. +...++|+ +...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35568999999999999999999976520 000 00 00012333 3455
Q ss_pred ceeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCCCc-------ccHHHHHHHHHhcCCCeEEEEEEccCCCC---C
Q 010060 117 QRRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYGFE-------METFEFLNLMQNHGLPRVMGVLTHLDKFK---D 183 (519)
Q Consensus 117 ~~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g~e-------~et~e~L~~L~~~GiP~VI~VlNKlDl~~---~ 183 (519)
+..++||||||+ +. .|+.++..||++|||+|++.+.. .++.+++..+...|+|.+|+|+||+|+.. .
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 779999999996 33 48889999999999999998764 68899999999999998888999999964 2
Q ss_pred HHHHHHHHHHHHHhhhhhcc---CCceEEEEecccCC----------cCChhHHHHHHHHHHhhcCCCCccccCCCeE-E
Q 010060 184 VKKLRKTKQRLKHRFWTEIY---DGAKLFYLSGLIHG----------KYSKREIRNLARFISVMKFPPLSWRTSHPYV-L 249 (519)
Q Consensus 184 ~k~l~~~kk~Lk~~f~~e~~---~~~kVf~lSAl~g~----------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYv-l 249 (519)
...+..+.+.+..++....+ ...+++++||++|. ||... .|+..|.. .+.+. .....|+. .
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~---~L~~~l~~-i~~~~-~~~~~p~r~~ 248 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGL---PFIPYLDN-LPNFN-RSVDGPIRLP 248 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCch---HHHHHHHh-CCCCc-cCCCCCeEEE
Confidence 33455566666554432222 25689999999984 33322 24444443 22222 12334653 3
Q ss_pred EEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecCCCC
Q 010060 250 VDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGLADP 308 (519)
Q Consensus 250 adr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l~dP 308 (519)
++.+. ++.| .+++|.|..+.+++|+.|.+.+.| ...|++|.....|
T Consensus 249 v~~~~------------~~~G-~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~ 295 (439)
T 3j2k_7 249 IVDKY------------KDMG-TVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTE 295 (439)
T ss_pred EEEEE------------cCCC-eEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeE
Confidence 33321 1123 568999999999999999876555 6788888764333
No 8
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.84 E-value=2.1e-19 Score=193.32 Aligned_cols=226 Identities=18% Similarity=0.209 Sum_probs=152.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc-----------------------------cCccccccc-----cEEEEecCc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT-----------------------------KHNVPEVRG-----PITIVSGKQ 117 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T-----------------------------r~~v~~~~G-----~iti~~~~~ 117 (519)
.+.+.|+|+|++|+|||||+++|++... .......+| ....+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4568999999999999999999987610 000000112 112234567
Q ss_pred eeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCC-------CcccHHHHHHHHHhcCCCeEEEEEEccCCCC-CHHH
Q 010060 118 RRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYG-------FEMETFEFLNLMQNHGLPRVMGVLTHLDKFK-DVKK 186 (519)
Q Consensus 118 ~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g-------~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~-~~k~ 186 (519)
..++||||||+ +. .++.++..||++|||+|++.+ +..++.+++..+...|++.+|+|+||+|+.. ....
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 89999999996 43 388899999999999999987 5568889999999899888888999999985 2444
Q ss_pred HHHHHHHHHHhhhhhcc--CCceEEEEecccCC-------------cCChhHHHHHHHHHHhhcCC--CCccccCCCe-E
Q 010060 187 LRKTKQRLKHRFWTEIY--DGAKLFYLSGLIHG-------------KYSKREIRNLARFISVMKFP--PLSWRTSHPY-V 248 (519)
Q Consensus 187 l~~~kk~Lk~~f~~e~~--~~~kVf~lSAl~g~-------------~Y~~~ei~~LlR~I~~~~~r--~~~wR~~~PY-v 248 (519)
+.++.+.+...+....+ ...++|++||++|. ||....+..++..+....+. |.. ....|+ +
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~-~~~~p~r~ 269 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGI-NKDDPFLF 269 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTC-CSSSCCEE
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccc-cCCCceEE
Confidence 56666666655432222 25789999999985 23333456666555433321 111 233465 5
Q ss_pred EEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecCC
Q 010060 249 LVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGLA 306 (519)
Q Consensus 249 ladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l~ 306 (519)
.++++..+.. +.+. ..+++|.|..+.+++|+.|.+...| ...|++|....
T Consensus 270 ~v~~v~~~~~-------~~g~-g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~ 320 (483)
T 3p26_A 270 SVLEIIPSKK-------TSND-LALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGS 320 (483)
T ss_dssp EEEEEEC----------CCSC-CEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETT
T ss_pred EEEEEEccCC-------cCCC-ceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcC
Confidence 5666644311 0122 3578999999999999999876655 56789998764
No 9
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.83 E-value=1.6e-19 Score=209.47 Aligned_cols=225 Identities=22% Similarity=0.275 Sum_probs=161.5
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC---------cc---c-cccccEEE------EecCceeEEEEcCCCC--c
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH---------NV---P-EVRGPITI------VSGKQRRLQFVECPND--I 129 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~---------~v---~-~~~G~iti------~~~~~~rl~fIDtPGd--l 129 (519)
..+.++|+|+|++|+|||||+++|++..... .+ . ....++|+ +......++||||||+ +
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4566899999999999999999999852100 00 0 01122333 2345688999999996 3
Q ss_pred h-hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc--CCc
Q 010060 130 N-GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY--DGA 206 (519)
Q Consensus 130 ~-smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~--~~~ 206 (519)
. .|+.++..||++|||+|++.+...++.+++..+...|+|.+|+|+||+|+..+...+..+...+...+....+ ...
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~v 452 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDT 452 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccce
Confidence 3 3788899999999999999999999999999888899998778999999986444444455555554432222 357
Q ss_pred eEEEEecccCC-----cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEe
Q 010060 207 KLFYLSGLIHG-----KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRG 280 (519)
Q Consensus 207 kVf~lSAl~g~-----~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG 280 (519)
+++++||++|. || .++..|+..|....+.|... ...|+ +.++++..++ + ...+++|+|..
T Consensus 453 p~IpvSAktG~ng~~~w~--eGI~eLleaL~~~Ip~P~r~-~d~Pfr~pId~Vf~i~----------G-~GtVvtGrV~s 518 (1289)
T 3avx_A 453 PIVRGSALKALEGDAEWE--AKILELAGFLDSYIPEPERA-IDKPFLLPIEDVFSIS----------G-RGTVVTGRVER 518 (1289)
T ss_dssp CEEECCSTTTTTCCHHHH--HHHHHHHHHHHHTSCCCCCG-GGSCCEEECCEEEEET----------T-TEEEEEEECCB
T ss_pred eEEEEEeccCCCCCcccc--ccchhhHhHHhhhcCCCccc-cccceeeecccccccc----------C-CcEEEEEEEec
Confidence 89999999882 22 45778888888776655433 23455 5566665542 1 24578999999
Q ss_pred EEeecCcEEEEecCCC---eEEEeeecCCCCC
Q 010060 281 CNLKKGIKVHIAGVGD---YSLAGVTGLADPC 309 (519)
Q Consensus 281 ~~Lk~~~~VhIpG~Gd---f~I~~I~~l~dP~ 309 (519)
+.|++|+.|.|.+.|+ ..|++|.....|+
T Consensus 519 GtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v 550 (1289)
T 3avx_A 519 GIIKVGEEVEIVGIKETQKSTCTGVEMFRKLL 550 (1289)
T ss_dssp SEEETTCEEEEESSSSCEEEEEEEEECSSCEE
T ss_pred cEEecCCEEEEecCCCceeEEEEEEeecCcee
Confidence 9999999999998874 6888988776655
No 10
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.6e-19 Score=199.93 Aligned_cols=227 Identities=18% Similarity=0.221 Sum_probs=152.6
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCc---c--------------------------ccccccEE------EEec
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN---V--------------------------PEVRGPIT------IVSG 115 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~---v--------------------------~~~~G~it------i~~~ 115 (519)
..+++.|+|+|++|+|||||+++|++....-. + ...+| +| .+..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~G-iTid~~~~~~~~ 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERG-VTVSICTSHFST 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTT-TCCSCSCCEEEC
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCC-eeEeeeeEEEec
Confidence 46678999999999999999999996521000 0 00011 22 2345
Q ss_pred CceeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCC-------CcccHHHHHHHHHhcCCCeEEEEEEccCCCC-CH
Q 010060 116 KQRRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYG-------FEMETFEFLNLMQNHGLPRVMGVLTHLDKFK-DV 184 (519)
Q Consensus 116 ~~~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g-------~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~-~~ 184 (519)
...+++||||||+ +. .++.++..||++|||+|++.| +..++.+++..+...|+|.+|+|+||+|+.. ..
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 6779999999996 33 477889999999999999875 4578889999999999998888999999985 24
Q ss_pred HHHHHHHHHHHHhhhhhcc--CCceEEEEecccCC-------------cCChhHHHHHHHHHHhhcCC-CCccccCCCe-
Q 010060 185 KKLRKTKQRLKHRFWTEIY--DGAKLFYLSGLIHG-------------KYSKREIRNLARFISVMKFP-PLSWRTSHPY- 247 (519)
Q Consensus 185 k~l~~~kk~Lk~~f~~e~~--~~~kVf~lSAl~g~-------------~Y~~~ei~~LlR~I~~~~~r-~~~wR~~~PY- 247 (519)
..+.++.+.+...+....+ ...++|++||++|. ||....+..++..+....+. +.......|+
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r 402 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 402 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCE
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchh
Confidence 4556666666665533222 25789999999884 23333344444333222221 1112234466
Q ss_pred EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecCC
Q 010060 248 VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGLA 306 (519)
Q Consensus 248 vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l~ 306 (519)
+.++++..+.. +.+.+ .+++|.|..|.+++|+.|.+.+.| ...|++|....
T Consensus 403 ~~V~~v~~~~~-------~~g~g-~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~ 454 (611)
T 3izq_1 403 FSVLEIIPSKK-------TSNDL-ALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGS 454 (611)
T ss_dssp EECCEEECCSS-------SCSSS-SEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSS
T ss_pred hheeeeeccCc-------cCCCe-eEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcc
Confidence 45555544311 00233 467899999999999999887665 56789998664
No 11
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.82 E-value=2.3e-20 Score=201.19 Aligned_cols=220 Identities=18% Similarity=0.250 Sum_probs=153.3
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc-----cCccccccccEEE------EecCceeEEEEcCCCC--ch-hHHHHh
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT-----KHNVPEVRGPITI------VSGKQRRLQFVECPND--IN-GMIDCA 136 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T-----r~~v~~~~G~iti------~~~~~~rl~fIDtPGd--l~-smld~a 136 (519)
.-++++|+++|++|+|||||+++|++... +......+| +|+ +...+..++||||||+ +. .++.++
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~G-iTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRG-ITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCc-cEEecceEEEEECCEEEEEEECCChHHHHHHHHHHH
Confidence 34568999999999999999999998641 111111122 332 2234678999999995 33 488889
Q ss_pred hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh-ccCCceEEEEeccc
Q 010060 137 KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE-IYDGAKLFYLSGLI 215 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e-~~~~~kVf~lSAl~ 215 (519)
..||++|||+|++.++.+++.+++.++...|+|. |+|+||+|+.. ...+..+.+.+...+... .+...++|++||++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~-~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAG-TEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSC-HHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred hhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCccc-chhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 9999999999999999999999999999999998 56899999985 445556666666655433 34467899999997
Q ss_pred CCcCChhHHHHHHHHHHhhcCCC-CccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEec
Q 010060 216 HGKYSKREIRNLARFISVMKFPP-LSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAG 293 (519)
Q Consensus 216 g~~Y~~~ei~~LlR~I~~~~~r~-~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG 293 (519)
| .++..|...|....+.+ +......|+ +.++++..+. +.| .+++|+|.++.+++|+.+.+.+
T Consensus 173 g-----~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~----------g~G-~v~~g~v~~G~l~~gd~v~~~p 236 (482)
T 1wb1_A 173 G-----FGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIK----------GAG-TVVTGTINKGIVKVGDELKVLP 236 (482)
T ss_dssp C-----TTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCS----------SCC-CEECCCCCBSCCCSSEEECCTT
T ss_pred C-----CCHHHHHHHHHHhhcCccccccccccccccceeEEEec----------CCc-eEEEEEEEEeEEeeCCEEEECC
Confidence 7 56777777776654322 122222343 4455655442 234 4678999999999999998865
Q ss_pred CC-CeEEEeeecCCCCC
Q 010060 294 VG-DYSLAGVTGLADPC 309 (519)
Q Consensus 294 ~G-df~I~~I~~l~dP~ 309 (519)
.+ ...|++|.....|+
T Consensus 237 ~~~~~~V~~i~~~~~~v 253 (482)
T 1wb1_A 237 INMSTKVRSIQYFKESV 253 (482)
T ss_dssp TCCCEEECCBCGGGSCB
T ss_pred CCcEEEEeEEEECCeEe
Confidence 44 56788887654443
No 12
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=3.4e-21 Score=195.73 Aligned_cols=215 Identities=17% Similarity=0.256 Sum_probs=143.3
Q ss_pred CCCCCeEEEEECCCCCChHHHHHHHHhcccc---CccccccccE-EEEecC-ceeEEEEcCCCCch-------------h
Q 010060 70 GEPPPFVVVVQGPPQVGKSLLIKSLIKHYTK---HNVPEVRGPI-TIVSGK-QRRLQFVECPNDIN-------------G 131 (519)
Q Consensus 70 ~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr---~~v~~~~G~i-ti~~~~-~~rl~fIDtPGdl~-------------s 131 (519)
..+|+..|+|+|.||||||||+|+|++..-. .........+ .+.... ..+++||||||... .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 3567789999999999999999999996311 1111111111 233445 78999999999521 2
Q ss_pred HHHHhhccCEEEEEEeCCCCCcccHHHH-HHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEE
Q 010060 132 MIDCAKIADLALLLIDGSYGFEMETFEF-LNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFY 210 (519)
Q Consensus 132 mld~ak~ADlVLLVVDas~g~e~et~e~-L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~ 210 (519)
+...+..||++|+|+|++.++..++..+ +..+...++|. |+|+||+|+..+...+....+.+.+.+ ....++|+
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pv-ilV~NK~Dl~~~~~~~~~~~~~l~~~~----~~~~~i~~ 160 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPV-IVVINKIDKIGPAKNVLPLIDEIHKKH----PELTEIVP 160 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCE-EEEEECGGGSSSGGGGHHHHHHHHHHC----TTCCCEEE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCE-EEEEECccCCCCHHHHHHHHHHHHHhc----cCCCeEEE
Confidence 4556789999999999998888877777 88888888884 568999999843444445555554432 24578999
Q ss_pred EecccCCcCChhHHHHHHHHH------------------------HhhcCCCCccccCC---CeEEEEEEEecCCccccc
Q 010060 211 LSGLIHGKYSKREIRNLARFI------------------------SVMKFPPLSWRTSH---PYVLVDRFEDVTPPERVR 263 (519)
Q Consensus 211 lSAl~g~~Y~~~ei~~LlR~I------------------------~~~~~r~~~wR~~~---PYvladr~edit~~~~i~ 263 (519)
+||++|. ++..|...| ..+..|+..++..+ ||.++..++.+..
T Consensus 161 vSA~~g~-----gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~----- 230 (308)
T 3iev_A 161 ISALKGA-----NLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKP----- 230 (308)
T ss_dssp CBTTTTB-----SHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEE-----
T ss_pred EeCCCCC-----CHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEE-----
Confidence 9999873 333333333 33333332333333 9977777665521
Q ss_pred cCCCCCceEEEEEEEEeEEe--ecCcEEEEecCCCeEEEeeec
Q 010060 264 MNNKCDRNVTIYGYLRGCNL--KKGIKVHIAGVGDYSLAGVTG 304 (519)
Q Consensus 264 ~~~~~~~~l~v~GyVRG~~L--k~~~~VhIpG~Gdf~I~~I~~ 304 (519)
.+..++.+. |.+.++ +.+|+-+|+|.|+-.|++|+.
T Consensus 231 -~~~~~~~~~----i~a~i~ve~~~~k~i~ig~~g~~ik~i~~ 268 (308)
T 3iev_A 231 -GDANPNMLV----IKGEIIVDRENLKPIIIGKKGQRLKEIGK 268 (308)
T ss_dssp -CSSCTTSEE----EEEEEEESSGGGHHHHHCGGGHHHHHHHH
T ss_pred -ccCCCCeEE----EEEEEEEccCCcceEEEcCCcHHHHHHHH
Confidence 110123343 557767 889999999999999999974
No 13
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.81 E-value=7.7e-19 Score=186.40 Aligned_cols=221 Identities=16% Similarity=0.201 Sum_probs=147.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc----c----------------Cccc-----------cccc-----cEEEEec
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT----K----------------HNVP-----------EVRG-----PITIVSG 115 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T----r----------------~~v~-----------~~~G-----~iti~~~ 115 (519)
.+.++|+++|++|+|||||+++|++... . ..+. ..+| .+..+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3458999999999999999999987530 0 0000 0011 1112344
Q ss_pred CceeEEEEcCCCC--chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC-CHHHHHHHH
Q 010060 116 KQRRLQFVECPND--ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK-DVKKLRKTK 191 (519)
Q Consensus 116 ~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~-~~k~l~~~k 191 (519)
....++||||||+ +.. ++.++..||++|||+|++.++..++.+++..+...|+|.+|+|+||+|+.. +.+.+..+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 5678999999996 433 778899999999999999999889999999888889988888999999985 234444555
Q ss_pred HHHHHhhhhhc--cCCceEEEEecccCC----------cCChhHHHHHHHHHHhhcCCCCccccCCCe-EEEEEEEecCC
Q 010060 192 QRLKHRFWTEI--YDGAKLFYLSGLIHG----------KYSKREIRNLARFISVMKFPPLSWRTSHPY-VLVDRFEDVTP 258 (519)
Q Consensus 192 k~Lk~~f~~e~--~~~~kVf~lSAl~g~----------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vladr~edit~ 258 (519)
+.+...+.... ....++|++||++|. ||....+. ..|... +.+.. ....|+ +.++.+...
T Consensus 182 ~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~---~~l~~i-~~~~~-~~~~~~~~~v~~v~~~-- 254 (434)
T 1zun_B 182 ADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLM---EILETV-EIASD-RNYTDLRFPVQYVNRP-- 254 (434)
T ss_dssp HHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTT---HHHHHS-CCTTC-CCSSSCEEECCEEECS--
T ss_pred HHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHH---HHHhcC-CCccc-CCCCCcEEEEEEEecc--
Confidence 55555442222 234789999999884 34322233 333332 22221 223455 334444322
Q ss_pred ccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecCCCC
Q 010060 259 PERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGLADP 308 (519)
Q Consensus 259 ~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l~dP 308 (519)
...+. .+.|+|..+.|++|+.|.+.+.| ...|++|.....|
T Consensus 255 --------~~~~~-g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~ 296 (434)
T 1zun_B 255 --------NLNFR-GFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGE 296 (434)
T ss_dssp --------SSSCC-EEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEE
T ss_pred --------CCCce-EEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcc
Confidence 11222 36799999999999999987655 6789999876543
No 14
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=3.6e-19 Score=190.54 Aligned_cols=223 Identities=21% Similarity=0.226 Sum_probs=151.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc---C---------------c-----ccc------ccccEE------EEecC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK---H---------------N-----VPE------VRGPIT------IVSGK 116 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr---~---------------~-----v~~------~~G~it------i~~~~ 116 (519)
.++++|+++|++|+|||||+++|++.... . . +.. ..| +| .+...
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~G-iTi~~~~~~~~~~ 83 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERG-ITIDIALWKFETP 83 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTT-CCCSCSCEEEECS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcC-cEEEEEEEEEecC
Confidence 35689999999999999999999875200 0 0 000 012 22 23456
Q ss_pred ceeEEEEcCCCC--chh-HHHHhhccCEEEEEEeCCCCCcc-------cHHHHHHHHHhcCCCeEEEEEEccCCCC-CHH
Q 010060 117 QRRLQFVECPND--ING-MIDCAKIADLALLLIDGSYGFEM-------ETFEFLNLMQNHGLPRVMGVLTHLDKFK-DVK 185 (519)
Q Consensus 117 ~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDas~g~e~-------et~e~L~~L~~~GiP~VI~VlNKlDl~~-~~k 185 (519)
...++||||||+ +.. |+.++..||++|||+|++.+..+ ++.+++..+...|+|.+|+|+||+|+.. +..
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~ 163 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES 163 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHH
Confidence 778999999996 433 78889999999999999977544 7788888888889998888999999984 344
Q ss_pred HHHHHHHHHHHhhhhhccC--CceEEEEecccCC----------cCChh---------HHHHHHHHHHhhcCCCCccccC
Q 010060 186 KLRKTKQRLKHRFWTEIYD--GAKLFYLSGLIHG----------KYSKR---------EIRNLARFISVMKFPPLSWRTS 244 (519)
Q Consensus 186 ~l~~~kk~Lk~~f~~e~~~--~~kVf~lSAl~g~----------~Y~~~---------ei~~LlR~I~~~~~r~~~wR~~ 244 (519)
.+..+.+.+..++....+. ..+++++||++|. ||... ....|+..|.. .+.|. ....
T Consensus 164 ~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~-~~~~ 241 (458)
T 1f60_A 164 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPS-RPTD 241 (458)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCC-CCTT
T ss_pred HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCc-ccCC
Confidence 5556666666544322222 4789999999985 23200 01235555543 22222 2234
Q ss_pred CCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecCCCC
Q 010060 245 HPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGLADP 308 (519)
Q Consensus 245 ~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l~dP 308 (519)
.|+ +.++++..+. +.| .+++|+|..+.++.|+.|.+.+.+ ...|++|.....|
T Consensus 242 ~p~r~~i~~v~~~~----------g~G-~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~ 296 (458)
T 1f60_A 242 KPLRLPLQDVYKIG----------GIG-TVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQ 296 (458)
T ss_dssp SCCEEEEEEEEEET----------TTE-EEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEE
T ss_pred CCcEEEEEEEEEeC----------CCc-EEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeE
Confidence 455 5666665542 233 578999999999999999876665 6788888865443
No 15
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.80 E-value=8e-19 Score=183.22 Aligned_cols=210 Identities=17% Similarity=0.158 Sum_probs=145.0
Q ss_pred EEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCCC
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYGF 152 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g~ 152 (519)
+|+++|++|+|||||+++|+... ++ +.-.+..+......++||||||+ +. .|+.++..||++|||+| +.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~g----iT-i~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~ 96 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKG----TS-SDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGL 96 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEE----EE-SSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----EE-EEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCC
Confidence 89999999999999999998221 10 11112234455678999999995 43 48889999999999999 8899
Q ss_pred cccHHHHHHHHHhcCCCeEEEEEE-ccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEE--EecccCCcCChhHHHHHHH
Q 010060 153 EMETFEFLNLMQNHGLPRVMGVLT-HLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFY--LSGLIHGKYSKREIRNLAR 229 (519)
Q Consensus 153 e~et~e~L~~L~~~GiP~VI~VlN-KlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~--lSAl~g~~Y~~~ei~~LlR 229 (519)
..++.+++..+...|+|.+|+|+| |+|+ . ...+..+.+.++.++........++|+ +||+++.| ..++..|+.
T Consensus 97 ~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~-~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~--g~gi~~L~~ 172 (370)
T 2elf_A 97 DAHTGECIIALDLLGFKHGIIALTRSDST-H-MHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNP--FEGVDELKA 172 (370)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEECCGGGS-C-HHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSST--TTTHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCeEEEEEEeccCC-C-HHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcC--CCCHHHHHH
Confidence 999999999999999998667899 9999 4 444555556666655332235679999 99998211 245666665
Q ss_pred HHHhhcCCCCc-cc--cCCC-eEEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeec
Q 010060 230 FISVMKFPPLS-WR--TSHP-YVLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTG 304 (519)
Q Consensus 230 ~I~~~~~r~~~-wR--~~~P-Yvladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~ 304 (519)
.|....+.+.. -. ...| .++++++..+. ..| .+++|.|..+.+++|+.+.+.+.| ...|++|..
T Consensus 173 ~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~----------~~G-~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~ 241 (370)
T 2elf_A 173 RINEVAEKIEAENAELNSLPARIFIDHAFNVT----------GKG-CVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQS 241 (370)
T ss_dssp HHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC--------------CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEE
T ss_pred HHHhhccccccCCcccccccccccceeEEEcC----------CCc-eEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEE
Confidence 55443321100 00 1112 34566665442 234 467899999999999999877665 668888876
Q ss_pred CC
Q 010060 305 LA 306 (519)
Q Consensus 305 l~ 306 (519)
..
T Consensus 242 ~~ 243 (370)
T 2elf_A 242 HD 243 (370)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 16
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.80 E-value=7.9e-19 Score=188.32 Aligned_cols=216 Identities=16% Similarity=0.211 Sum_probs=138.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC-----------------------cccc-----ccccEEE------EecCc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH-----------------------NVPE-----VRGPITI------VSGKQ 117 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-----------------------~v~~-----~~G~iti------~~~~~ 117 (519)
.+.++|+++|++|+|||||+++|+..+..- .+.+ ...++|+ +...+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 456899999999999999999998632100 0000 0112333 23456
Q ss_pred eeEEEEcCCCC--ch-hHHHHhhccCEEEEEEeCCCCC-------cccHHHHHHHHHhcCCCeEEEEEEccCCCC---CH
Q 010060 118 RRLQFVECPND--IN-GMIDCAKIADLALLLIDGSYGF-------EMETFEFLNLMQNHGLPRVMGVLTHLDKFK---DV 184 (519)
Q Consensus 118 ~rl~fIDtPGd--l~-smld~ak~ADlVLLVVDas~g~-------e~et~e~L~~L~~~GiP~VI~VlNKlDl~~---~~ 184 (519)
..++||||||+ +. .|+.++..||++|||+|++.+. ..++.+++..+...|+|.+|+|+||+|+.. +.
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 88999999996 43 3888899999999999999875 368889998888899998888999999964 23
Q ss_pred HHHHHHHHHHHHhhhhh-ccC---CceEEEEecccCC------------cCChhHHHHHHHHHHhhcCCCCccccCCCeE
Q 010060 185 KKLRKTKQRLKHRFWTE-IYD---GAKLFYLSGLIHG------------KYSKREIRNLARFISVMKFPPLSWRTSHPYV 248 (519)
Q Consensus 185 k~l~~~kk~Lk~~f~~e-~~~---~~kVf~lSAl~g~------------~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYv 248 (519)
+.+..+...+...+... .+. ..++|++||++|. ||... .|+.+|.. .+.+.. ....|+.
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~---~L~~~l~~-i~~~~~-~~~~p~~ 275 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGP---SLLEYLDS-MTHLER-KVNAPFI 275 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSC---CHHHHHHH-CCCCHH-HHTSCCE
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccch---hHHHHHHh-CCCCcC-CCCCCcE
Confidence 45556666666555332 233 5689999999884 23222 24444443 222221 1234553
Q ss_pred -EEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecC
Q 010060 249 -LVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGL 305 (519)
Q Consensus 249 -ladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l 305 (519)
.++++.. ..| .+++|+|..+.|++|+.|.+.+.| ...|++|...
T Consensus 276 ~~v~~~~~------------~~G-~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~ 321 (467)
T 1r5b_A 276 MPIASKYK------------DLG-TILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE 321 (467)
T ss_dssp EECCEEEE------------SSS-EEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT
T ss_pred EEEEEEEe------------CCC-eEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc
Confidence 3444321 124 578999999999999999886655 5678888754
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.79 E-value=2.4e-18 Score=182.74 Aligned_cols=218 Identities=17% Similarity=0.258 Sum_probs=147.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc---ccCc--------------------ccc-----ccccEEE------EecCc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY---TKHN--------------------VPE-----VRGPITI------VSGKQ 117 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~---Tr~~--------------------v~~-----~~G~iti------~~~~~ 117 (519)
.+.++|+++|++|+|||||+++|+... .... +.+ ...++|+ +....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 456899999999999999999998752 1000 000 0112332 34556
Q ss_pred eeEEEEcCCCC--chh-HHHHhhccCEEEEEEeCCCC-------CcccHHHHHHHHHhcCCCeEEEEEEccCCCCC---H
Q 010060 118 RRLQFVECPND--ING-MIDCAKIADLALLLIDGSYG-------FEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD---V 184 (519)
Q Consensus 118 ~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDas~g-------~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~---~ 184 (519)
..++||||||+ +.. ++.++..||++|||+|++.+ +..++.+++..+...|+|.+|+|+||+|+... .
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 78999999996 433 78889999999999999988 77788999998888899878789999999852 3
Q ss_pred HHHHHHHHHHHHhhhhhccC--CceEEEEecccCCc----------CChhHHHHHHHHHHhhcCCCCccccCCCe-EEEE
Q 010060 185 KKLRKTKQRLKHRFWTEIYD--GAKLFYLSGLIHGK----------YSKREIRNLARFISVMKFPPLSWRTSHPY-VLVD 251 (519)
Q Consensus 185 k~l~~~kk~Lk~~f~~e~~~--~~kVf~lSAl~g~~----------Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY-vlad 251 (519)
..+..+.+.++..+....+. ..++|++||++|.. |.. ..|+..|... +.|.. ....|+ +.++
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g---~~Ll~~l~~~-~~p~~-~~~~~~~~~v~ 238 (435)
T 1jny_A 164 KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNG---PTLEEYLDQL-ELPPK-PVDKPLRIPIQ 238 (435)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCS---CCHHHHHTTC-CCCCC-GGGSCCBEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccc---hhHHHHHhcc-CCCCC-CCCCCeEEEEE
Confidence 44555666666655332222 47899999998742 221 1445554432 22322 123344 5556
Q ss_pred EEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecC
Q 010060 252 RFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGL 305 (519)
Q Consensus 252 r~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l 305 (519)
++..++ ..| .+++|.|..+.|++|+.|.+.+.| ...|++|...
T Consensus 239 ~v~~~~----------~~G-~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~ 282 (435)
T 1jny_A 239 DVYSIS----------GVG-TVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH 282 (435)
T ss_dssp EEEEET----------TTE-EEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET
T ss_pred EEEEeC----------CCc-EEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC
Confidence 655442 123 567999999999999999887655 5677888654
No 18
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.76 E-value=1.9e-19 Score=182.74 Aligned_cols=205 Identities=17% Similarity=0.213 Sum_probs=133.8
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcccc---CccccccccE-EEEecCceeEEEEcCCCCc----------hh-HHHHhhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTK---HNVPEVRGPI-TIVSGKQRRLQFVECPNDI----------NG-MIDCAKI 138 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr---~~v~~~~G~i-ti~~~~~~rl~fIDtPGdl----------~s-mld~ak~ 138 (519)
...|+|+|+||||||||+|+|++..-. ....+....+ .+......+++|+||||.. .. ...++..
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhc
Confidence 357999999999999999999986311 0000111111 1344567899999999942 22 3456789
Q ss_pred cCEEEEEEeCCCCCcccHHHHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 139 ADLALLLIDGSYGFEMETFEFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
||++|||+|++.++...+..++..+... +.|. |+|+||+|+......+ .+.+... .+..++|++||++|
T Consensus 87 ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~-ilV~NK~Dl~~~~~~~---~~~~~~~-----~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPI-LLVGNKLDAAKYPEEA---MKAYHEL-----LPEAEPRMLSALDE 157 (301)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCE-EEEEECGGGCSSHHHH---HHHHHHT-----STTSEEEECCTTCH
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCE-EEEEECcccCCchHHH---HHHHHHh-----cCcCcEEEEeCCCC
Confidence 9999999999988887777787878766 7885 5689999998643212 2222221 35568999999866
Q ss_pred CcCChhHHHHHHHHHHhhc-------------------------CCCCccccC---CCeEEEEEEEecCCccccccCCCC
Q 010060 217 GKYSKREIRNLARFISVMK-------------------------FPPLSWRTS---HPYVLVDRFEDVTPPERVRMNNKC 268 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~~-------------------------~r~~~wR~~---~PYvladr~edit~~~~i~~~~~~ 268 (519)
.++..|...|.... .|+...+.. -||.++..++.+.. .+
T Consensus 158 -----~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~------~~-- 224 (301)
T 1wf3_A 158 -----RQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAE------RE-- 224 (301)
T ss_dssp -----HHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEE------ET--
T ss_pred -----CCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEe------cC--
Confidence 34444444333322 221111122 28877776665521 11
Q ss_pred CceEEEEEEEEeEEe--ecCcEEEEecCCCeEEEeeec
Q 010060 269 DRNVTIYGYLRGCNL--KKGIKVHIAGVGDYSLAGVTG 304 (519)
Q Consensus 269 ~~~l~v~GyVRG~~L--k~~~~VhIpG~Gdf~I~~I~~ 304 (519)
++.+. +.+.++ +.+|+-+|+|.|+-.|++|+.
T Consensus 225 ~~~~~----i~~~i~ve~~~~k~iiig~~g~~lk~i~~ 258 (301)
T 1wf3_A 225 NGVLY----IKAILYVERPSQKAIVIGEGGRKIKEIGQ 258 (301)
T ss_dssp TTEEE----EEEEEEESSHHHHHHHHCGGGHHHHHHHH
T ss_pred CCeEE----EEEEEEEeeCCceEEEEeCCchHHHHHHH
Confidence 24444 556666 889999999999999999974
No 19
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.75 E-value=2.3e-17 Score=181.99 Aligned_cols=224 Identities=20% Similarity=0.236 Sum_probs=144.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC----ccccccccEEEEe-----------------cCceeEEEEcCCCC--c
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH----NVPEVRGPITIVS-----------------GKQRRLQFVECPND--I 129 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~----~v~~~~G~iti~~-----------------~~~~rl~fIDtPGd--l 129 (519)
.+++|+|+|++|+|||||+++|++..... .++...|...+.. .....++||||||+ |
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999999864211 1111112111110 01125999999996 5
Q ss_pred hh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCH----------------H----HHH
Q 010060 130 NG-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDV----------------K----KLR 188 (519)
Q Consensus 130 ~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~----------------k----~l~ 188 (519)
.. +..++..||++|||+|++.|+++++++.+..+...++|. |+|+||+|+.... . .+.
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPi-IVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~ 162 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPF-VVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCE-EEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeE-EEEecccccccccccccCCchHHHHHHhHHHHHHHHH
Confidence 44 334678899999999999999999999999999999995 5689999996421 1 111
Q ss_pred HHHHHHHHhhhhh------------ccCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCC----ccccCCCe-EEEE
Q 010060 189 KTKQRLKHRFWTE------------IYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPL----SWRTSHPY-VLVD 251 (519)
Q Consensus 189 ~~kk~Lk~~f~~e------------~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~----~wR~~~PY-vlad 251 (519)
+....+...+... +....++|++||++| .++..|+..|....+.++ .+....|. ..+.
T Consensus 163 e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG-----~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~ 237 (594)
T 1g7s_A 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG-----EGIPELLTMLMGLAQQYLREQLKIEEDSPARGTIL 237 (594)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC-----TTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEE
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC-----CCchhHHHHHHhhccccchhhhccccCCCceeEEE
Confidence 1111222222111 123458999999987 677777766665433222 22223344 3333
Q ss_pred EEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEEeeecCCCCCCCCh
Q 010060 252 RFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGVTGLADPCPLPS 313 (519)
Q Consensus 252 r~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~~I~~l~dP~pl~~ 313 (519)
.....+ ....+++|.|..+.|++|+.+.+.+.++....+|..+-.|.|+.+
T Consensus 238 ~~~~d~-----------g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~e 288 (594)
T 1g7s_A 238 EVKEET-----------GLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEE 288 (594)
T ss_dssp EEEEET-----------TEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC-
T ss_pred EEEEeC-----------CcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccch
Confidence 333221 123567899999999999999998887754556666666666653
No 20
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.74 E-value=5.8e-18 Score=171.51 Aligned_cols=208 Identities=14% Similarity=0.177 Sum_probs=137.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc---Ccc-ccccccEEEEecCceeEEEEcCCCCc-hh-----------HHHHh
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK---HNV-PEVRGPITIVSGKQRRLQFVECPNDI-NG-----------MIDCA 136 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr---~~v-~~~~G~iti~~~~~~rl~fIDtPGdl-~s-----------mld~a 136 (519)
.+..|+|+|+||||||||+|+|++.... ... .+......++.....+++|+||||.. .. +..++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 3468999999999999999999986311 001 11111112345567789999999975 21 23456
Q ss_pred hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 137 KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
..+|++++|+|++. ++..+..++..+...+.|.+ +|+||+|+......+.+..+.+.+ ..+...+|++||+++
T Consensus 87 ~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~i-lvlNK~D~~~~~~~~~~~l~~l~~-----~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 87 GDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVI-LAVNKVDNVQEKADLLPHLQFLAS-----QMNFLDIVPISAETG 159 (301)
T ss_dssp CCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEE-EEEESTTTCCCHHHHHHHHHHHHT-----TSCCSEEEECCTTTT
T ss_pred hcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEE-EEEECcccCccHHHHHHHHHHHHH-----hcCcCceEEEECCCC
Confidence 88999999999987 88888888888887788965 589999998633444444443332 223457999999876
Q ss_pred CcCChhHHHHHHHHHHhhcCC-CCc--------------------------cccCCCeEEEEEEEecCCccccccCCCCC
Q 010060 217 GKYSKREIRNLARFISVMKFP-PLS--------------------------WRTSHPYVLVDRFEDVTPPERVRMNNKCD 269 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~~~r-~~~--------------------------wR~~~PYvladr~edit~~~~i~~~~~~~ 269 (519)
.++..|+..|....+. +.. .+...||.++..++.+.+. ..
T Consensus 160 -----~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~--------~~ 226 (301)
T 1ega_A 160 -----LNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSN--------ER 226 (301)
T ss_dssp -----TTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECC--------SS
T ss_pred -----CCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEec--------CC
Confidence 4555555555543321 110 1233488766666655221 12
Q ss_pred ceEEEEEEEEeEEe--ecCcEEEEecCCCeEEEeeec
Q 010060 270 RNVTIYGYLRGCNL--KKGIKVHIAGVGDYSLAGVTG 304 (519)
Q Consensus 270 ~~l~v~GyVRG~~L--k~~~~VhIpG~Gdf~I~~I~~ 304 (519)
+++. +...++ +.+++.+|+|.+|-.|++|+.
T Consensus 227 ~~~~----i~~~i~v~~~~~k~i~ig~~G~~~k~ig~ 259 (301)
T 1ega_A 227 GGYD----INGLILVEREGQKKMVIGNKGAKIKTIGI 259 (301)
T ss_dssp CSEE----EEEEEEESSHHHHHHHHCGGGHHHHHHHH
T ss_pred CeEE----EEEEEEEEECCceEEEECCCcHHHHHHHH
Confidence 4444 345555 778999999999999999974
No 21
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.72 E-value=4.2e-16 Score=171.99 Aligned_cols=208 Identities=19% Similarity=0.273 Sum_probs=142.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc---cC----ccc------cccc------cEEEE----ecCceeEEEEcCCCC--
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT---KH----NVP------EVRG------PITIV----SGKQRRLQFVECPND-- 128 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~----~v~------~~~G------~iti~----~~~~~rl~fIDtPGd-- 128 (519)
.++|+|+|++|+|||||+++|+..+. .. .+. ..+| .+++. .+....+.||||||+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 47999999999999999999987421 10 000 0111 11111 122368899999996
Q ss_pred chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCce
Q 010060 129 ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAK 207 (519)
Q Consensus 129 l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~k 207 (519)
+.. +..++..||.+|||+|++.+.+.++.+.+..+...++| +|+|+||+|+.... ...+.+.+...+ ......
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~--~~~v~~el~~~l---g~~~~~ 159 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSAD--VDRVKKQIEEVL---GLDPEE 159 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHHHTS---CCCGGG
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccC--HHHHHHHHHHhh---CCCccc
Confidence 433 66788999999999999999999999888888888999 55689999997532 334445554433 112346
Q ss_pred EEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCe--EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeec
Q 010060 208 LFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPY--VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKK 285 (519)
Q Consensus 208 Vf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY--vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~ 285 (519)
+|++||++| .++..|+..|....+.|.. ....|+ ++.+.+.+. .+..+++|.|..+.+++
T Consensus 160 vi~vSAktg-----~GI~~Lle~I~~~lp~p~~-~~~~pl~~lV~~~~~d~------------~~G~v~~~rV~sG~l~~ 221 (600)
T 2ywe_A 160 AILASAKEG-----IGIEEILEAIVNRIPPPKG-DPQKPLKALIFDSYYDP------------YRGAVAFVRIFDGEVKP 221 (600)
T ss_dssp CEECBTTTT-----BSHHHHHHHHHHHSCCCCC-CTTSCCEEEEEEEEEET------------TTEEEEEEEEEESEECT
T ss_pred EEEEEeecC-----CCchHHHHHHHHhcccccc-cccCCcceeEEEEeecc------------cceEEEEEEEEeCEEec
Confidence 899999977 6788899888888776643 233455 233443321 23467899999999999
Q ss_pred CcEEEEecCC-CeEEEeeecC
Q 010060 286 GIKVHIAGVG-DYSLAGVTGL 305 (519)
Q Consensus 286 ~~~VhIpG~G-df~I~~I~~l 305 (519)
|+.|.+...| .+.|.+|...
T Consensus 222 Gd~I~~~~~~~~~~v~~i~~~ 242 (600)
T 2ywe_A 222 GDKIMLMSTGKEYEVTEVGAQ 242 (600)
T ss_dssp TCEEEETTTTEEEECCEEEEE
T ss_pred CCEEEeccccceEeeeccccc
Confidence 9999887765 5677777753
No 22
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.71 E-value=6.8e-16 Score=168.16 Aligned_cols=215 Identities=13% Similarity=0.187 Sum_probs=143.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc--------------cCccc-----------cccccEEEEecCceeEEEEcCCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT--------------KHNVP-----------EVRGPITIVSGKQRRLQFVECPND 128 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T--------------r~~v~-----------~~~G~iti~~~~~~rl~fIDtPGd 128 (519)
.++|+|+|++|+|||||+++|+.... ...+. ++......+......+.||||||.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 47999999999999999999973210 00000 011122234456789999999995
Q ss_pred --chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh----
Q 010060 129 --ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE---- 201 (519)
Q Consensus 129 --l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e---- 201 (519)
+.. +...+..||++|+|+|++.+.+.++..++..+...++|.+ +|+||+|+.... ..++.+.+.+.+-..
T Consensus 93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPii-vviNK~Dl~~~~--~~~~l~ei~~~l~~~~~~~ 169 (528)
T 3tr5_A 93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIM-TFINKMDRDTRP--SIELLDEIESILRIHCAPV 169 (528)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEE-EEEECTTSCCSC--HHHHHHHHHHHHCCEEEES
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCCCcccc--HHHHHHHHHHhhCCCceee
Confidence 433 7788999999999999999999999999999999999955 589999997422 122223333322100
Q ss_pred ---------------------------------------------------------------------------c--cC
Q 010060 202 ---------------------------------------------------------------------------I--YD 204 (519)
Q Consensus 202 ---------------------------------------------------------------------------~--~~ 204 (519)
+ ..
T Consensus 170 ~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 249 (528)
T 3tr5_A 170 TWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGE 249 (528)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTS
T ss_pred ecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCc
Confidence 0 01
Q ss_pred CceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCcccc--------CCCeE-EEEEEEecCCccccccCCCCCceEEEE
Q 010060 205 GAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRT--------SHPYV-LVDRFEDVTPPERVRMNNKCDRNVTIY 275 (519)
Q Consensus 205 ~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~--------~~PYv-ladr~edit~~~~i~~~~~~~~~l~v~ 275 (519)
..+||+.||++| .++..|+..|....+.|..... ..|+. ++-++...-+ |..-| ...+
T Consensus 250 ~~PV~~gSA~~~-----~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~d-------p~~~g-~l~~ 316 (528)
T 3tr5_A 250 LTPIFFGSAINN-----FGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMD-------PGHRD-RIAF 316 (528)
T ss_dssp EEEEEECBGGGT-----BSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC--------CCCC-EEEE
T ss_pred eeEEEeccccCC-----ccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccC-------ccCCc-eEEE
Confidence 127899999977 6889999999888887754322 13443 2222221101 21123 4567
Q ss_pred EEEEeEEeecCcEEEEecCC-CeEEEeeec
Q 010060 276 GYLRGCNLKKGIKVHIAGVG-DYSLAGVTG 304 (519)
Q Consensus 276 GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~ 304 (519)
+.|..+.|+.|+.|.....| ...|.++..
T Consensus 317 ~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~ 346 (528)
T 3tr5_A 317 LRIASGQYQKGMKAYHVRLKKEIQINNALT 346 (528)
T ss_dssp EEEEESCEETTEEEEETTTTEEEEESSCBC
T ss_pred EEEecCeEcCCCEEEecCCCceEEEeeeEE
Confidence 88889999999999888777 456666654
No 23
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.69 E-value=1.5e-17 Score=181.34 Aligned_cols=212 Identities=16% Similarity=0.173 Sum_probs=135.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc----CccccccccEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK----HNVPEVRGPITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr----~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLV 145 (519)
.|+.|+|+|++|+|||||+++|++.... ..++.-.+...+.......++||||||+ +.. +..++..+|++|||
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 4678999999999999999999976211 0111111111122224568999999995 454 45678999999999
Q ss_pred EeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHh--hhhhccCCceEEEEecccCCcCChhH
Q 010060 146 IDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHR--FWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 146 VDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~--f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
+|++.+..+++.+++..+...++| +|+|+||+|+..... ..+...+... +...+....++|++||++| .+
T Consensus 83 VDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~--~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG-----~G 154 (537)
T 3izy_P 83 VAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKAEADP--EKVKKELLAYDVVCEDYGGDVQAVHVSALTG-----EN 154 (537)
T ss_dssp CBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSC--CSSSSHHHHTTSCCCCSSSSEEECCCCSSSS-----CS
T ss_pred EECCCCccHHHHHHHHHHHHcCCc-EEEEEecccccccch--HHHHHHHHhhhhhHHhcCCCceEEEEECCCC-----CC
Confidence 999999999999999999999999 556899999974211 1111122211 1122234568999999988 45
Q ss_pred HHHHHHHHHhhcCC-CCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEEe
Q 010060 224 IRNLARFISVMKFP-PLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAG 301 (519)
Q Consensus 224 i~~LlR~I~~~~~r-~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~~ 301 (519)
+..|+..|...... +.......|. ..+.+.... +..| .+++|.|..+.|++|+.+ ++|.....|+.
T Consensus 155 I~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~----------~g~G-~V~~g~V~~G~l~~Gd~v-~~g~~~~kVr~ 222 (537)
T 3izy_P 155 MMALAEATIALAEMLELKADPTGAVEGTVIESFTD----------KGRG-PVTTAIIQRGTLRKGSIL-VAGKSWAKVRL 222 (537)
T ss_dssp SHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCC----------TTCC-CCEEEEEEEECCSSEEEE-CCSSCCEEEEE
T ss_pred chhHHHHHHHhhhcccccCCCCCCcceeEEEEEEe----------CCCc-eEEEEEEecCEEEcCCEE-EeCCceEEEEE
Confidence 66666555544321 1111122344 344444322 1233 457889999999999986 56654456776
Q ss_pred eec
Q 010060 302 VTG 304 (519)
Q Consensus 302 I~~ 304 (519)
|..
T Consensus 223 i~~ 225 (537)
T 3izy_P 223 MFD 225 (537)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
No 24
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.69 E-value=1.8e-15 Score=167.14 Aligned_cols=207 Identities=20% Similarity=0.245 Sum_probs=140.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc---ccC----ccc------cccccEEEE-----------ecCceeEEEEcCCCC-
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY---TKH----NVP------EVRGPITIV-----------SGKQRRLQFVECPND- 128 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~---Tr~----~v~------~~~G~iti~-----------~~~~~rl~fIDtPGd- 128 (519)
.++|+|+|++|+|||||+++|+..+ +.. .+. ..+| +|+. .+....+.||||||+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerG-iTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERG-ITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhccc-ceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4799999999999999999999742 100 000 0112 2221 112468999999996
Q ss_pred -chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCc
Q 010060 129 -ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGA 206 (519)
Q Consensus 129 -l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~ 206 (519)
+.. +..++..||++|||+|++.+.+.++.+.+..+...++| +|+|+||+|+.... ..++.+.+...+ .....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~--~~~v~~ei~~~l---g~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD--PERVAEEIEDIV---GIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHHHHT---CCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccccc--HHHHHHHHHHHh---CCCcc
Confidence 443 66788999999999999999999999888888888998 55689999997532 234444454433 12334
Q ss_pred eEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCe--EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEee
Q 010060 207 KLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPY--VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLK 284 (519)
Q Consensus 207 kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PY--vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk 284 (519)
.+|++||++| .++..|+..|....+.|.. ....|. ++.+.+.+. ....+++|.|..+.|+
T Consensus 157 ~vi~vSAktg-----~GI~~Ll~~I~~~lp~p~~-~~~~p~~alI~d~~~d~------------~~G~v~~~rV~sG~l~ 218 (599)
T 3cb4_D 157 DAVRCSAKTG-----VGVQDVLERLVRDIPPPEG-DPEGPLQALIIDSWFDN------------YLGVVSLIRIKNGTLR 218 (599)
T ss_dssp TCEEECTTTC-----TTHHHHHHHHHHHSCCCCC-CTTSCCEEEEEEEEEET------------TTEEEEEEEEEESCEE
T ss_pred eEEEeecccC-----CCchhHHHHHhhcCCCccc-cccCCceeeeeeccccc------------cccEEEEEEEEeCEEe
Confidence 6899999977 6788899888888776653 234465 333433321 1346778999999999
Q ss_pred cCcEEEEecCC-CeEEEeeecC
Q 010060 285 KGIKVHIAGVG-DYSLAGVTGL 305 (519)
Q Consensus 285 ~~~~VhIpG~G-df~I~~I~~l 305 (519)
+|+.+.+...| .+.|.+|..+
T Consensus 219 ~Gd~v~~~~~~~~~~v~~i~~~ 240 (599)
T 3cb4_D 219 KGDKVKVMSTGQTYNADRLGIF 240 (599)
T ss_dssp SSCEEEETTTCCEEECCEEEEE
T ss_pred cCCEEEeccccceeEEeeeeec
Confidence 99999887766 4578888754
No 25
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.68 E-value=3.3e-17 Score=177.34 Aligned_cols=211 Identities=17% Similarity=0.121 Sum_probs=133.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC----ccccccccEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH----NVPEVRGPITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~----~v~~~~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
+.|++|+|+|++|+|||||+++|++..... .++...+.+ .+...+..++||||||+ |.. +..++..||++||
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~-~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAY-HVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCC-CCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEE-EEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 456799999999999999999998752110 011001111 12234568999999996 544 5567899999999
Q ss_pred EEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHH--hhhhhccCCceEEEEecccCCcCChh
Q 010060 145 LIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKH--RFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 145 VVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~--~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
|+|++.++.+++.+++..+...++| +|+|+||+|+..... ..+...+.. .+...+....++|++||++| .
T Consensus 81 VVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~--~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG-----~ 152 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADP--DRVKNELSQYGILPEEWGGESQFVHVSAKAG-----T 152 (501)
T ss_dssp EEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCC--CCTTCCCCCCCCCTTCCSSSCEEEECCTTTC-----T
T ss_pred EeecccCccHHHHHHHHHHHhcCce-EEEEEEeccccccCH--HHHHHHHHHhhhhHHHhCCCccEEEEeeeec-----c
Confidence 9999999999999999999999999 667999999974210 111111110 01111223468999999987 4
Q ss_pred HHHHHHHHHHhhcC-CCCccccCCCe-EEEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEE
Q 010060 223 EIRNLARFISVMKF-PPLSWRTSHPY-VLVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLA 300 (519)
Q Consensus 223 ei~~LlR~I~~~~~-r~~~wR~~~PY-vladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~ 300 (519)
++..|+..|..... .++......|. .++.+.... ...| .+++|.|..+.|++|+.+.+.+. ..+|+
T Consensus 153 gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d----------~g~G-~v~~~~V~~Gtlk~Gd~v~~g~~-~~kVr 220 (501)
T 1zo1_I 153 GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLD----------KGRG-PVATVLVREGTLHKGDIVLCGFE-YGRVR 220 (501)
T ss_dssp TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEEC----------SSSS-EEEEEEEEESBCCTTCEEEEEBS-SCEEE
T ss_pred CcchhhhhhhhhhhhhccccccccccccceEEEEEe----------CCcE-EEEEEEEEeeEEecCCEEEEccc-eeEEE
Confidence 56667766653311 11111112333 333333221 1223 57889999999999998876442 33555
Q ss_pred eee
Q 010060 301 GVT 303 (519)
Q Consensus 301 ~I~ 303 (519)
.|.
T Consensus 221 ~i~ 223 (501)
T 1zo1_I 221 AMR 223 (501)
T ss_dssp EEC
T ss_pred EEE
Confidence 553
No 26
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.67 E-value=5.3e-16 Score=147.05 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=107.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc---cEEE--E-ecCceeEEEEcCCCCc------------h---
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG---PITI--V-SGKQRRLQFVECPNDI------------N--- 130 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G---~iti--~-~~~~~rl~fIDtPGdl------------~--- 130 (519)
...+.|+|+|.+|+|||||+|+|++......+....| .+.. . ......+.||||||.. .
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 3457899999999999999999998741111111111 1111 1 1345789999999931 1
Q ss_pred -hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh----ccCC
Q 010060 131 -GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE----IYDG 205 (519)
Q Consensus 131 -smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e----~~~~ 205 (519)
..+..+..+|++|||+|++.++......++..+...++|. |+|+||+|+... .........+...+... ....
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~-i~v~nK~Dl~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPI-HSLLTKCDKLTR-QESINALRATQKSLDAYRDAGYAGK 184 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCE-EEEEECGGGSCH-HHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEeccccCCh-hhHHHHHHHHHHHHHhhhhcccCCC
Confidence 2334455689999999999888877788888888888884 568999999863 33333333333333211 1357
Q ss_pred ceEEEEecccCCcCChhHHHHHHHHHHhhcCCC
Q 010060 206 AKLFYLSGLIHGKYSKREIRNLARFISVMKFPP 238 (519)
Q Consensus 206 ~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~ 238 (519)
.++|++||++| .++..+...|....+.+
T Consensus 185 ~~~~~~SA~~g-----~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 185 LTVQLFSALKR-----TGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEEEEEBTTTT-----BSHHHHHHHHHHHHC--
T ss_pred CeEEEeecCCC-----cCHHHHHHHHHHhcCcc
Confidence 78999999977 67888887777665543
No 27
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.67 E-value=1.9e-15 Score=165.38 Aligned_cols=213 Identities=15% Similarity=0.256 Sum_probs=142.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc----------c----Cccc------cccc-----cEEEEecCceeEEEEcCCCC-
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT----------K----HNVP------EVRG-----PITIVSGKQRRLQFVECPND- 128 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T----------r----~~v~------~~~G-----~iti~~~~~~rl~fIDtPGd- 128 (519)
++||||||+++|||||..+|+..+- + ..+. ..+| ..+-+.+.+..+.||||||+
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 7999999999999999999985421 0 0111 1122 22234567899999999996
Q ss_pred -chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh-----
Q 010060 129 -ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE----- 201 (519)
Q Consensus 129 -l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e----- 201 (519)
|.. +..++.++|.+|+||||..|++.+|..++..+...++|.++ ++||+|+... .+..+...++..|...
T Consensus 112 DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~-fINK~Dr~~a--d~~~~~~~i~~~l~~~~~p~~ 188 (548)
T 3vqt_A 112 DFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMT-FVNKMDREAL--HPLDVMADIEQHLQIECAPMT 188 (548)
T ss_dssp GCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEE-EEECTTSCCC--CHHHHHHHHHHHHTSEEEESE
T ss_pred HHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEE-EEecccchhc--chhHhhhhhhhhcCCceEeEE
Confidence 444 88999999999999999999999999999999999999765 8999998642 2334444444433100
Q ss_pred --------------------------------------------------------------------------c--cCC
Q 010060 202 --------------------------------------------------------------------------I--YDG 205 (519)
Q Consensus 202 --------------------------------------------------------------------------~--~~~ 205 (519)
+ ...
T Consensus 189 ~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~ 268 (548)
T 3vqt_A 189 WPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGEL 268 (548)
T ss_dssp EEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSE
T ss_pred eeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCc
Confidence 0 012
Q ss_pred ceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccc--------cCCCeE-EEEEEEecCCccccccCCCCCceEEEEE
Q 010060 206 AKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWR--------TSHPYV-LVDRFEDVTPPERVRMNNKCDRNVTIYG 276 (519)
Q Consensus 206 ~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR--------~~~PYv-ladr~edit~~~~i~~~~~~~~~l~v~G 276 (519)
.|||+.||+++ .++..|+..|....|.|..-. ...|+. ++-.+....+ .+ ..|.+ .++
T Consensus 269 ~PV~~gSA~~~-----~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~------~~-~~Grl-a~~ 335 (548)
T 3vqt_A 269 TPVFFGSAINN-----FGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMD------KA-HRDRM-AFL 335 (548)
T ss_dssp EEEEECBGGGT-----BSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC--------------CE-EEE
T ss_pred ceeeecccccC-----cCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCC------cC-CCCeE-EEE
Confidence 46788888866 678899999999888775321 112443 2222221100 01 12333 467
Q ss_pred EEEeEEeecCcEEEEecCC-CeEEEeee
Q 010060 277 YLRGCNLKKGIKVHIAGVG-DYSLAGVT 303 (519)
Q Consensus 277 yVRG~~Lk~~~~VhIpG~G-df~I~~I~ 303 (519)
.|..+.|+.|+.|...+.| ...|.++.
T Consensus 336 RV~sG~l~~g~~v~~~~~~~~~rv~~l~ 363 (548)
T 3vqt_A 336 RICSGTFTRGMRLKHHRTGKDVTVANAT 363 (548)
T ss_dssp EEEESCEETTCEEEETTTTEEEECTTCE
T ss_pred EEecceecCCCEEEeeccccccccchhh
Confidence 7888899999999988877 44454444
No 28
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.64 E-value=2.8e-15 Score=137.92 Aligned_cols=152 Identities=22% Similarity=0.263 Sum_probs=103.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccc---cEEEEecCceeEEEEcCCCC------------chh----HH
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG---PITIVSGKQRRLQFVECPND------------ING----MI 133 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G---~iti~~~~~~rl~fIDtPGd------------l~s----ml 133 (519)
..+.|+|+|.+|+|||||+|+|++.... ......| .+.. .....++.++||||- +.. .+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINF-YLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEE-EEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEE-EEECCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 4468999999999999999999987411 1111111 1111 122457899999991 112 33
Q ss_pred HHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 134 DCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 134 d~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
..+..+|++++|+|++.+.......++..+...++|. ++|+||+|+.... ......+.+...+ ......++|++||
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa 175 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPF-TIVLTKMDKVKMS-ERAKKLEEHRKVF--SKYGEYTIIPTSS 175 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECGGGSCGG-GHHHHHHHHHHHH--HSSCCSCEEECCT
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCE-EEEEEChhcCChH-HHHHHHHHHHHHH--hhcCCCceEEEec
Confidence 4455679999999998887777778888888888885 5689999998532 3344444444433 2234578999999
Q ss_pred ccCCcCChhHHHHHHHHHHhhc
Q 010060 214 LIHGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~~~ 235 (519)
++| .++..+...|....
T Consensus 176 ~~~-----~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 176 VTG-----EGISELLDLISTLL 192 (195)
T ss_dssp TTC-----TTHHHHHHHHHHHH
T ss_pred CCC-----CCHHHHHHHHHHHh
Confidence 977 67777777766543
No 29
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.64 E-value=2e-15 Score=139.68 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=100.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc---cEEEEecCceeEEEEcCCCC------------chh----H
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG---PITIVSGKQRRLQFVECPND------------ING----M 132 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G---~iti~~~~~~rl~fIDtPGd------------l~s----m 132 (519)
...+.|+|+|++|+|||||+|+|++..-........| .+..... ...+.||||||. +.. .
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998631111111111 0111111 347999999991 112 2
Q ss_pred HHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 133 IDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 133 ld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
+..+..+|++|+|+|++.+......+++..+...++| +++|+||+|+.... .+....+.+.+.+. .....++|++|
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~S 175 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATKADKIPKG-KWDKHAKVVRQTLN--IDPEDELILFS 175 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGG-GHHHHHHHHHHHHT--CCTTSEEEECC
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChH-HHHHHHHHHHHHHc--ccCCCceEEEE
Confidence 2233445999999999988877777788888888888 45689999998643 33344444444331 23467899999
Q ss_pred cccCCcCChhHHHHHHHHHHhh
Q 010060 213 GLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~~~ 234 (519)
|+++ .++..+...|...
T Consensus 176 a~~~-----~gv~~l~~~l~~~ 192 (195)
T 1svi_A 176 SETK-----KGKDEAWGAIKKM 192 (195)
T ss_dssp TTTC-----TTHHHHHHHHHHH
T ss_pred ccCC-----CCHHHHHHHHHHH
Confidence 9977 6777777776654
No 30
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.62 E-value=1.5e-14 Score=157.68 Aligned_cols=217 Identities=13% Similarity=0.203 Sum_probs=142.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcccc--------------Ccccc------ccc-----cEEEEecCceeEEEEcCCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTK--------------HNVPE------VRG-----PITIVSGKQRRLQFVECPND 128 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--------------~~v~~------~~G-----~iti~~~~~~rl~fIDtPGd 128 (519)
.++|+|+|++|+|||||+++|+..... ..+.. .+| ....+......+.||||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 479999999999999999999974210 01110 112 11123456788999999996
Q ss_pred --chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhh-----
Q 010060 129 --ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWT----- 200 (519)
Q Consensus 129 --l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~----- 200 (519)
+.. +..++..||++|+|+|++.+++.++.+++..+...++| +++|+||+|+..... .++.+.+...+..
T Consensus 93 ~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~--~~~~~~i~~~l~~~~~~~ 169 (529)
T 2h5e_A 93 EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP--MELLDEVENELKIGCAPI 169 (529)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH--HHHHHHHHHHHCCEEEES
T ss_pred hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH--HHHHHHHHHHhCCCccce
Confidence 444 77889999999999999999999999999998888999 556899999975321 1222223222100
Q ss_pred -------------------------h--------------------------------------------------c--c
Q 010060 201 -------------------------E--------------------------------------------------I--Y 203 (519)
Q Consensus 201 -------------------------e--------------------------------------------------~--~ 203 (519)
. + .
T Consensus 170 ~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 249 (529)
T 2h5e_A 170 TWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAG 249 (529)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTT
T ss_pred ecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhC
Confidence 0 0 0
Q ss_pred CCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCcccc--------CCCeEEEEEEEecCCccccccCCCCCceEEEE
Q 010060 204 DGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRT--------SHPYVLVDRFEDVTPPERVRMNNKCDRNVTIY 275 (519)
Q Consensus 204 ~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~--------~~PYvladr~edit~~~~i~~~~~~~~~l~v~ 275 (519)
...|||+.||+++ .++..|+..|....|.|..... ..|+. +--+.-..+ .++...|. ..+
T Consensus 250 ~~~Pv~~gSA~~~-----~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~-~~vfKi~~~-----~d~~~~G~-i~~ 317 (529)
T 2h5e_A 250 EITPVFFGTALGN-----FGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFT-GFVFKIQAN-----MDPKHRDR-VAF 317 (529)
T ss_dssp SEEEEEECBTTTT-----BSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCE-EEEEEECSS-----CCSSSSCC-CEE
T ss_pred ceeEEEeeecccC-----CCHHHHHHHHHHhCCCCCcccccccccCCCCCCeE-EEEEEEeec-----cCcCCCce-EEE
Confidence 1236888888866 6788899999888887754321 13443 111111110 01111244 568
Q ss_pred EEEEeEEeecCcEEEEecCC-CeEEEeeecC
Q 010060 276 GYLRGCNLKKGIKVHIAGVG-DYSLAGVTGL 305 (519)
Q Consensus 276 GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l 305 (519)
|.|..+.|+.|+.|.+.+.| ...|.+|..+
T Consensus 318 ~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~ 348 (529)
T 2h5e_A 318 MRVVSGKYEKGMKLRQVRTAKDVVISDALTF 348 (529)
T ss_dssp EEEEESCEETTCEEEETTTTEEEECSCEECC
T ss_pred EEEecCeEcCCCEEEEeeCCCEEEeceeeEE
Confidence 89999999999999888766 4566666643
No 31
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.62 E-value=3.2e-15 Score=135.80 Aligned_cols=154 Identities=18% Similarity=0.292 Sum_probs=101.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC-c---cccccccEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH-N---VPEVRGPITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~---v~~~~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
..++.|+|+|.+|||||||+++|++..-.. . +....+.. .+...+..+.+|||||. +.. ....+..+|++|+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAY-QVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCC-EEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEE-EEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 456799999999999999999999852111 0 11001111 12234568999999995 333 2345688999999
Q ss_pred EEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHh--hhhhccCCceEEEEecccCCcCChh
Q 010060 145 LIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHR--FWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 145 VVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~--f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
|+|++.+...+.++.+..+...++| +++|+||+|+.... ..++...+... +...+....++|++||++| .
T Consensus 85 v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-----~ 156 (178)
T 2lkc_A 85 VVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK-----E 156 (178)
T ss_dssp EEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS-----H
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCCcccEEEEecCCC-----C
Confidence 9999888777888888887777888 55689999998532 12222222110 1011112358999999977 6
Q ss_pred HHHHHHHHHHhh
Q 010060 223 EIRNLARFISVM 234 (519)
Q Consensus 223 ei~~LlR~I~~~ 234 (519)
++..+...|...
T Consensus 157 gv~~l~~~l~~~ 168 (178)
T 2lkc_A 157 GLDHLLEMILLV 168 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 777777666543
No 32
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.62 E-value=4.9e-15 Score=133.41 Aligned_cols=155 Identities=10% Similarity=0.088 Sum_probs=97.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEEeC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGM-IDCAKIADLALLLIDG 148 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVVDa 148 (519)
..+..|+|+|++|+|||||+++|++........++.-.+..+......+.++||||. +..+ ...+..+|++|+|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 346899999999999999999998753221111111111123345788999999996 4443 3457899999999999
Q ss_pred CCC--CcccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 149 SYG--FEMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 149 s~g--~e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
+.+ +......+..++.. .+.| +++|+||+|+.... ...++.+.+...+.. ..+.++|++||++| .+
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~-----~g 155 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQAM-TSSEMANSLGLPALK--DRKWQIFKTSATKG-----TG 155 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHHTGGGCT--TSCEEEEECCTTTC-----TT
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCCC-CHHHHHHHhCchhcc--CCceEEEECcCCCC-----cC
Confidence 865 33222334444433 4666 56699999997532 123333333211111 13458999999977 56
Q ss_pred HHHHHHHHHhhc
Q 010060 224 IRNLARFISVMK 235 (519)
Q Consensus 224 i~~LlR~I~~~~ 235 (519)
+..+...|....
T Consensus 156 i~~l~~~l~~~i 167 (171)
T 1upt_A 156 LDEAMEWLVETL 167 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666543
No 33
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.60 E-value=7.2e-14 Score=156.67 Aligned_cols=213 Identities=17% Similarity=0.186 Sum_probs=142.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc----------Ccccc------ccccEEE------EecCceeEEEEcCCCC--
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK----------HNVPE------VRGPITI------VSGKQRRLQFVECPND-- 128 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr----------~~v~~------~~G~iti------~~~~~~rl~fIDtPGd-- 128 (519)
..++|+|+|++|+|||||+++|+..... ..+.. ..| +|+ +......+.||||||+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~g-iTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERG-ITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcc-cccccceEEEEECCeEEEEEECcCccc
Confidence 3589999999999999999999953200 00000 111 222 2345678999999996
Q ss_pred chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh------
Q 010060 129 ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE------ 201 (519)
Q Consensus 129 l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e------ 201 (519)
+.. +..++..+|++|||+|++.+...++..++..+...++|.+ +|+||+|+.... +..+.+.++..+-..
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~--~~~~~~~l~~~l~~~~~~~~~ 166 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKTGAD--LWLVIRTMQERLGARPVVMQL 166 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC--HHHHHHHHHHTTCCCEEECEE
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCcccCC--HHHHHHHHHHHhCCCccceec
Confidence 444 6778899999999999999999999888888888899965 589999997532 334444444332100
Q ss_pred --------------------cc----------------------------------------------------------
Q 010060 202 --------------------IY---------------------------------------------------------- 203 (519)
Q Consensus 202 --------------------~~---------------------------------------------------------- 203 (519)
.+
T Consensus 167 Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~ 246 (691)
T 1dar_A 167 PIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAI 246 (691)
T ss_dssp EESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHH
T ss_pred cccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHH
Confidence 00
Q ss_pred -------CCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccc-----------------cCCCeE-EEEEEEecCC
Q 010060 204 -------DGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWR-----------------TSHPYV-LVDRFEDVTP 258 (519)
Q Consensus 204 -------~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR-----------------~~~PYv-ladr~edit~ 258 (519)
...|+|+.||+++ .++..|+..|....|.|.... ...|++ ++-++...
T Consensus 247 ~~~~~~~~~~Pv~~gSA~~~-----~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d-- 319 (691)
T 1dar_A 247 RKGTIDLKITPVFLGSALKN-----KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMAD-- 319 (691)
T ss_dssp HHHHHTTSCEEEEECBGGGT-----BSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEE--
T ss_pred HHHHHhCcEeEEEEeecccC-----cCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEc--
Confidence 1146888999876 578899999999888876521 123553 33333221
Q ss_pred ccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecC
Q 010060 259 PERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGL 305 (519)
Q Consensus 259 ~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l 305 (519)
+ .+....+|.|..+.|+.|+.|..+..| .+.|.+|..+
T Consensus 320 -------~--~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~ 358 (691)
T 1dar_A 320 -------P--YVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRM 358 (691)
T ss_dssp -------T--TTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEE
T ss_pred -------C--CCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEE
Confidence 1 223457899999999999999877655 3556666543
No 34
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=8.7e-15 Score=135.18 Aligned_cols=162 Identities=9% Similarity=0.075 Sum_probs=98.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEEeC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALLLIDG 148 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDa 148 (519)
.....|+|+|.+|||||||+++|++........++.-.+..+...+..+.++||||. +.. ....+..+|++|+|+|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 93 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 93 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 445899999999999999999999642111111111111122335688999999995 444 34567899999999999
Q ss_pred CCCC--cccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 149 SYGF--EMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 149 s~g~--e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
+.+. +.....+..++.. .+.| +++|+||+|+.... ...++.+.+.... ....+.++|++||++| .+
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~~~~--~~~~~~~~~~~Sa~~g-----~g 164 (187)
T 1zj6_A 94 TDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECM-TVAEISQFLKLTS--IKDHQWHIQACCALTG-----EG 164 (187)
T ss_dssp TCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHHTGGG--CCSSCEEEEECBTTTT-----BT
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCCC-CHHHHHHHhChhh--hcCCCcEEEEccCCCC-----cC
Confidence 8653 2222233333332 4566 66799999997531 1233333322110 0113458999999977 67
Q ss_pred HHHHHHHHHhhcCCCCccc
Q 010060 224 IRNLARFISVMKFPPLSWR 242 (519)
Q Consensus 224 i~~LlR~I~~~~~r~~~wR 242 (519)
+..+...|......+..+.
T Consensus 165 i~~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 165 LCQGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp HHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 8888888887766555443
No 35
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.59 E-value=1.4e-16 Score=177.07 Aligned_cols=209 Identities=19% Similarity=0.228 Sum_probs=142.1
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc----------Ccccc------ccccEEE------EecCceeEEEEcCCCC--ch
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK----------HNVPE------VRGPITI------VSGKQRRLQFVECPND--IN 130 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr----------~~v~~------~~G~iti------~~~~~~rl~fIDtPGd--l~ 130 (519)
++|||+||+++|||||+.+|+..+-. ..+.+ .+| ||+ +.+.+.++.||||||+ |.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRG-ITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRG-ITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHS-SCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCC-CcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 68999999999999999999865310 00111 122 333 2456789999999996 44
Q ss_pred h-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhh---------
Q 010060 131 G-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWT--------- 200 (519)
Q Consensus 131 s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~--------- 200 (519)
. +..++..+|.+|+||||..|++.+|..++..+...|+|.++ ++||+|+... .+..+.+.+++.|..
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~-~INKmDr~~a--~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIF-FINKIDQNGI--DLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEE-CCEECCSSSC--CSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEE-EEeccccccC--CHHHHHHHHHHHhCCCccccceeE
Confidence 4 88999999999999999999999999999999999999765 7999998641 112222222222210
Q ss_pred ---------------------------------h----------------ccCCceEEEEecccCCcCChhHHHHHHHHH
Q 010060 201 ---------------------------------E----------------IYDGAKLFYLSGLIHGKYSKREIRNLARFI 231 (519)
Q Consensus 201 ---------------------------------e----------------~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I 231 (519)
+ .....|+|+.||+++ .++..|+..|
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~-----~Gv~~LLd~i 233 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSN-----IGIDNLIEVI 233 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTC-----CSHHHHHHHH
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccC-----CCchhHhhhh
Confidence 0 012357888898866 5788899999
Q ss_pred HhhcCCCCccccCCCeE-EEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCCCeEEEeeec
Q 010060 232 SVMKFPPLSWRTSHPYV-LVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVGDYSLAGVTG 304 (519)
Q Consensus 232 ~~~~~r~~~wR~~~PYv-ladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~Gdf~I~~I~~ 304 (519)
....+.|.. +...|+. ++-.+. .++. .| ...+|.|..+.|+.|+.|++.+.+...|.++-.
T Consensus 234 ~~~~p~p~~-~~~~~~~~~Vfk~~---------~d~~-~G-~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~ 295 (638)
T 3j25_A 234 TNKFYSSTH-RGPSELCGNVFKIE---------YTKK-RQ-RLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYT 295 (638)
T ss_dssp HHSCCCSGG-GSCCCCCBEEBCCC---------CCST-TC-CCCBCCBSSBCCCSCCCSSSCCCCCSSBCCCCS
T ss_pred hccccCccc-chhhhhcceeeeee---------eecc-Cc-eEEEEEEEcCcccCCCccccccCcceeEEeeec
Confidence 888777643 3344543 222211 1121 12 234667778889999999887777655555543
No 36
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.59 E-value=4.2e-14 Score=157.94 Aligned_cols=210 Identities=19% Similarity=0.157 Sum_probs=142.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc----Ccc------cc------ccc-----cEEEEecCceeEEEEcCCCC--c
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK----HNV------PE------VRG-----PITIVSGKQRRLQFVECPND--I 129 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr----~~v------~~------~~G-----~iti~~~~~~rl~fIDtPGd--l 129 (519)
+..+|+|+|++|+|||||+++|++.... ..+ .. .+| ....+......+.+|||||+ +
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4579999999999999999999964311 111 00 011 11122345678999999996 4
Q ss_pred hh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhh---------
Q 010060 130 NG-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFW--------- 199 (519)
Q Consensus 130 ~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~--------- 199 (519)
.. +..++..+|.+++|+|++.++..++.+++..+...++|.+ +|+||+|+. .. ..++.+.+...+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~~-~~--~~~~~~~l~~~l~~~~~~~~Pi 163 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDKG-GD--YYALLEDLRSTLGPILPIDLPL 163 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGGC-CC--HHHHHHHHHHHHCSEEECEEEE
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCchh-hh--HHHHHHHHHHHhCCcceEEeee
Confidence 34 7788899999999999999999999999999988999966 489999987 32 2233333333221
Q ss_pred ---------------------------------------------------------hhcc-------------------
Q 010060 200 ---------------------------------------------------------TEIY------------------- 203 (519)
Q Consensus 200 ---------------------------------------------------------~e~~------------------- 203 (519)
..++
T Consensus 164 ~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~ 243 (665)
T 2dy1_A 164 YEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVR 243 (665)
T ss_dssp EETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred cCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 0000
Q ss_pred --CCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccccCCCeE-EEEEEEecCCccccccCCCCCceEEEEEEEEe
Q 010060 204 --DGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWRTSHPYV-LVDRFEDVTPPERVRMNNKCDRNVTIYGYLRG 280 (519)
Q Consensus 204 --~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR~~~PYv-ladr~edit~~~~i~~~~~~~~~l~v~GyVRG 280 (519)
...++|+.||++| .++..|+..|....+.|.......|++ ++-++... + ......+|.|..
T Consensus 244 ~~~~~pv~~~SA~~~-----~Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d---------~--~~G~~~~~rV~s 307 (665)
T 2dy1_A 244 RGLLYPVALASGERE-----IGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVD---------P--FMGQVAYLRLYR 307 (665)
T ss_dssp TTSCEEEEECBTTTT-----BSHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEE---------T--TTEEEEEEEEEE
T ss_pred hCCeeEEEEeecccC-----cCHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEc---------C--CCCeEEEEEEcc
Confidence 1257999999876 678899999888887765321345653 34444322 1 123457899999
Q ss_pred EEeecCcEEEEecCCCeEEEeee
Q 010060 281 CNLKKGIKVHIAGVGDYSLAGVT 303 (519)
Q Consensus 281 ~~Lk~~~~VhIpG~Gdf~I~~I~ 303 (519)
+.|+.|+.|.+++ ....|.+|.
T Consensus 308 G~l~~g~~v~~~~-~~~~v~~l~ 329 (665)
T 2dy1_A 308 GRLKPGDSLQSEA-GQVRLPHLY 329 (665)
T ss_dssp SEECTTEEEBCTT-SCEEESSEE
T ss_pred cEEecCCEEEcCC-CeEEEeEEE
Confidence 9999999998766 445555554
No 37
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.58 E-value=2.4e-14 Score=137.30 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=93.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc-CccccccccEE--EEecCceeEEEEcCCCCc------------hhHHHHh
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPEVRGPIT--IVSGKQRRLQFVECPNDI------------NGMIDCA 136 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~~~G~it--i~~~~~~rl~fIDtPGdl------------~smld~a 136 (519)
..++.|+|+|.+|||||||+|+|++.... .......-.+. ........+.||||||.. ..+....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 45689999999999999999999986321 00000000111 112245789999999962 1233346
Q ss_pred hccCEEEEEEeCCCCCccc---HHHHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEE
Q 010060 137 KIADLALLLIDGSYGFEME---TFEFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~e---t~e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
..+|++|||+|++.....+ ...++..+... ++| +++|+||+|+.............+.. +........++|++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKIDKCNMDSLSIDNKLLIKQ-ILDNVKNPIKFSSF 184 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECGGGCC--CCCHHHHHHHHH-HHHHCCSCEEEEEC
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCcccCCchhhHHHHHHHHHH-HHHhcCCCceEEEE
Confidence 7889999999998654322 23566666654 677 55689999997532111111111221 21221123789999
Q ss_pred ecccCCcCChhHHHHHHHHHHhh
Q 010060 212 SGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
||++| .++..+...|...
T Consensus 185 SA~~g-----~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 185 STLTG-----VGVEQAKITACEL 202 (228)
T ss_dssp CTTTC-----TTHHHHHHHHHHH
T ss_pred ecccC-----CCHHHHHHHHHHH
Confidence 99987 4566666554443
No 38
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.58 E-value=1.7e-14 Score=153.83 Aligned_cols=143 Identities=17% Similarity=0.290 Sum_probs=102.5
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCccccccc-----cEEEEecCceeEEEEcCCCC------------ch--h
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-----PITIVSGKQRRLQFVECPND------------IN--G 131 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-----~iti~~~~~~rl~fIDtPGd------------l~--s 131 (519)
...+..|+++|.+|+|||||+|+|++... ..+....| ....+...+..++||||||. +. .
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 45678999999999999999999997531 01111111 01122335568999999992 11 2
Q ss_pred HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCC-HHHHHHHHHHHHHhhhhhccCCceEEE
Q 010060 132 MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD-VKKLRKTKQRLKHRFWTEIYDGAKLFY 210 (519)
Q Consensus 132 mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~-~k~l~~~kk~Lk~~f~~e~~~~~kVf~ 210 (519)
++.++..||++|+|+|++.++..+...++..+...|.|. |+|+||+|+... .....+..+.++..+ ....+.++|+
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~-ilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 347 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAV-VIVVNKWDAVDKDESTMKEFEENIRDHF--QFLDYAPILF 347 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEE-EEEEECGGGSCCCSSHHHHHHHHHHHHC--GGGTTSCEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCE-EEEEEChhcCCCchHHHHHHHHHHHHhc--ccCCCCCEEE
Confidence 445678999999999999999998889999998889885 458999999853 223455555555543 3346789999
Q ss_pred EecccCC
Q 010060 211 LSGLIHG 217 (519)
Q Consensus 211 lSAl~g~ 217 (519)
+||++|.
T Consensus 348 ~SA~~g~ 354 (456)
T 4dcu_A 348 MSALTKK 354 (456)
T ss_dssp CCTTTCT
T ss_pred EcCCCCc
Confidence 9999883
No 39
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.58 E-value=1.9e-13 Score=153.58 Aligned_cols=213 Identities=13% Similarity=0.165 Sum_probs=142.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc---cC-------cccc------ccccEEE------EecCc-------eeEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT---KH-------NVPE------VRGPITI------VSGKQ-------RRLQFV 123 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~-------~v~~------~~G~iti------~~~~~-------~rl~fI 123 (519)
..++|+|+|++|+|||||+++|+..+. +. .+.+ .+| +|+ +.... ..+.||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rg-iTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG-ITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcC-ceeeeceEEEEECCccccCCceeEEEE
Confidence 457999999999999999999986421 10 0110 112 222 12223 789999
Q ss_pred cCCCC--chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhh--
Q 010060 124 ECPND--ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRF-- 198 (519)
Q Consensus 124 DtPGd--l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f-- 198 (519)
||||+ |.. +..++..||.+|+|+|++.+...++..++..+...++|.+ +|+||+|+... .+.++.+.++..|
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~~~~--~~~~~~~~l~~~l~~ 164 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRMGA--NFLKVVNQIKTRLGA 164 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCcccc--cHHHHHHHHHHHhCC
Confidence 99996 444 6778899999999999999998889888888888899966 58999998742 2233333333322
Q ss_pred ----------------------------hhh-----------------------------------------c-------
Q 010060 199 ----------------------------WTE-----------------------------------------I------- 202 (519)
Q Consensus 199 ----------------------------~~e-----------------------------------------~------- 202 (519)
|.. +
T Consensus 165 ~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~ 244 (704)
T 2rdo_7 165 NPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELT 244 (704)
T ss_pred CceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCC
Confidence 100 0
Q ss_pred --------------cCCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccc-------------------cCCCeE-
Q 010060 203 --------------YDGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWR-------------------TSHPYV- 248 (519)
Q Consensus 203 --------------~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR-------------------~~~PYv- 248 (519)
....++|+.||+++ .++..|+..|....|.|.... ...|++
T Consensus 245 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~-----~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 319 (704)
T 2rdo_7 245 EAEIKGALRQRVLNNEIILVTCGSAFKN-----KGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSA 319 (704)
T ss_pred HHHHHHHHHHHHHhCCeeEEEEeecccC-----ccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEE
Confidence 01246888899866 578889999988888775431 122442
Q ss_pred EEEEEEecCCccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeecC
Q 010060 249 LVDRFEDVTPPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTGL 305 (519)
Q Consensus 249 ladr~edit~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~l 305 (519)
++-++... + ..|. ..+|.|..+.|+.|+.|..+..| ...|.+|..+
T Consensus 320 ~VfK~~~d---------~-~~G~-~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~ 366 (704)
T 2rdo_7 320 LAFKIATD---------P-FVGN-LTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQM 366 (704)
T ss_pred EEEEEEEc---------C-CCce-EEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEE
Confidence 33333221 1 1234 47889999999999999887765 3566666543
No 40
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.58 E-value=1.3e-14 Score=153.87 Aligned_cols=143 Identities=17% Similarity=0.308 Sum_probs=101.0
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCcccccccc-----EEEEecCceeEEEEcCCCC---------ch-----h
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP-----ITIVSGKQRRLQFVECPND---------IN-----G 131 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~-----iti~~~~~~rl~fIDtPGd---------l~-----s 131 (519)
+..++.|+|+|+||||||||+|+|++... ..+....|. ...+...+..+.||||||. +. .
T Consensus 172 ~~~~~ki~lvG~~nvGKSSLin~l~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 172 NEEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTT-EEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCCCc-eeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHH
Confidence 34568999999999999999999998631 111111110 1122334667999999983 12 1
Q ss_pred HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEE
Q 010060 132 MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFY 210 (519)
Q Consensus 132 mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~ 210 (519)
++.++..||++|+|+|++.++..++..++..+...|.| +|+|+||+|+..... ...+..+.+...+ ....+.++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~ 327 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHF--QFLDYAPILF 327 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCTTHHHHHHHHHHHHC--GGGTTSCEEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECccCCCcchHHHHHHHHHHHHhc--ccCCCCCEEE
Confidence 34577899999999999999988888888888888888 556899999986322 2344555555544 2335789999
Q ss_pred EecccCC
Q 010060 211 LSGLIHG 217 (519)
Q Consensus 211 lSAl~g~ 217 (519)
+||++|.
T Consensus 328 ~SA~tg~ 334 (436)
T 2hjg_A 328 MSALTKK 334 (436)
T ss_dssp CCTTTCT
T ss_pred EecccCC
Confidence 9999884
No 41
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.58 E-value=1.2e-13 Score=155.06 Aligned_cols=213 Identities=13% Similarity=0.159 Sum_probs=141.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc---C-------cccc------ccc-----cEEEEecCceeEEEEcCCCC--c
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK---H-------NVPE------VRG-----PITIVSGKQRRLQFVECPND--I 129 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr---~-------~v~~------~~G-----~iti~~~~~~rl~fIDtPGd--l 129 (519)
..++|+|+|++|+|||||+++|+..... . .+.. .+| ....+......+.||||||. +
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 4589999999999999999999953210 0 0000 011 11123345678999999996 4
Q ss_pred hh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh-------
Q 010060 130 NG-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE------- 201 (519)
Q Consensus 130 ~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e------- 201 (519)
.. +..++..||++|||+|++.++..++..++..+...++|.+ +|+||+|+.... +..+.+.++..+-..
T Consensus 89 ~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~~~~--~~~~~~~l~~~l~~~~~~~~ip 165 (693)
T 2xex_A 89 TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDKLGAN--FEYSVSTLHDRLQANAAPIQLP 165 (693)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC--HHHHHHHHHHHHCCCEEESEEE
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCccccc--hHHHHHHHHHHhCCCceeEEee
Confidence 43 6778899999999999999999898888888888899955 589999997531 233333333322100
Q ss_pred -------------------cc-----------------------------------------------------------
Q 010060 202 -------------------IY----------------------------------------------------------- 203 (519)
Q Consensus 202 -------------------~~----------------------------------------------------------- 203 (519)
.+
T Consensus 166 isa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~ 245 (693)
T 2xex_A 166 IGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIR 245 (693)
T ss_dssp ECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHH
Confidence 00
Q ss_pred ------CCceEEEEecccCCcCChhHHHHHHHHHHhhcCCCCccc-------------------cCCCeE-EEEEEEecC
Q 010060 204 ------DGAKLFYLSGLIHGKYSKREIRNLARFISVMKFPPLSWR-------------------TSHPYV-LVDRFEDVT 257 (519)
Q Consensus 204 ------~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~r~~~wR-------------------~~~PYv-ladr~edit 257 (519)
...|+|+.||+++ .++..|+..|....|.|.... ...|++ ++-++...
T Consensus 246 ~~~~~~~~~Pv~~gSA~~~-----~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d- 319 (693)
T 2xex_A 246 QATTNVEFYPVLCGTAFKN-----KGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTD- 319 (693)
T ss_dssp HHHHTTSCEEEEECBTTTT-----BSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEE-
T ss_pred HHHHhCCeeeEEEeecccC-----cCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeec-
Confidence 1146888898866 578889999998888775421 122542 33333221
Q ss_pred CccccccCCCCCceEEEEEEEEeEEeecCcEEEEecCC-CeEEEeeec
Q 010060 258 PPERVRMNNKCDRNVTIYGYLRGCNLKKGIKVHIAGVG-DYSLAGVTG 304 (519)
Q Consensus 258 ~~~~i~~~~~~~~~l~v~GyVRG~~Lk~~~~VhIpG~G-df~I~~I~~ 304 (519)
+ .+....+|.|..+.|+.|+.|..+..| ...|.+|..
T Consensus 320 --------~--~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~ 357 (693)
T 2xex_A 320 --------P--YVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQ 357 (693)
T ss_dssp --------T--TTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEE
T ss_pred --------C--CCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEE
Confidence 1 223457889999999999999987655 355666654
No 42
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.58 E-value=9.2e-15 Score=130.32 Aligned_cols=144 Identities=24% Similarity=0.284 Sum_probs=96.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccC--ccc-cccccE-EEEecCceeEEEEcCCCCch---------h-HHHHhhccC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP-EVRGPI-TIVSGKQRRLQFVECPNDIN---------G-MIDCAKIAD 140 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~-~~~G~i-ti~~~~~~rl~fIDtPGdl~---------s-mld~ak~AD 140 (519)
+.|+|+|.+|+|||||+++|++..... ... ...... ......+..+.++||||... . ....+..+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 579999999999999999999864110 000 000111 11233456899999999432 2 344678999
Q ss_pred EEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 141 LALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 141 lVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
++|+|+|++.++......++..+...+.| +++|+||+|+...... +.. +. . .+..++|++||++|
T Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-------~~~-~~-~-~~~~~~~~~Sa~~~---- 146 (161)
T 2dyk_A 82 VVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDDPKHELY-------LGP-LY-G-LGFGDPIPTSSEHA---- 146 (161)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCSGGGGGG-------CGG-GG-G-GSSCSCEECBTTTT----
T ss_pred EEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECcccccchHh-------HHH-HH-h-CCCCCeEEEecccC----
Confidence 99999999988777666777777777888 5568999999753211 111 11 1 12337899999976
Q ss_pred hhHHHHHHHHHHhh
Q 010060 221 KREIRNLARFISVM 234 (519)
Q Consensus 221 ~~ei~~LlR~I~~~ 234 (519)
.++.++...|...
T Consensus 147 -~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 147 -RGLEELLEAIWER 159 (161)
T ss_dssp -BSHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHh
Confidence 6777777776654
No 43
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.58 E-value=2.9e-14 Score=160.25 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=81.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc----------cCcc------ccccccEEEEe------c-------CceeEEEEcC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT----------KHNV------PEVRGPITIVS------G-------KQRRLQFVEC 125 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T----------r~~v------~~~~G~iti~~------~-------~~~rl~fIDt 125 (519)
++||||||.++|||||+.+|+..+- ...+ ...+| ||+.+ + ....+.||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRG-ITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERG-ITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcC-CeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 8999999999999999999986531 0011 11122 33321 1 2478999999
Q ss_pred CCC--chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 126 PND--ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 126 PGd--l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
||+ |.. +..++..+|.+|+||||.+|++.+|..+++.+...++|.++ |+||+|+..
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~-~iNKiDr~~ 151 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIV-YVNKMDRQG 151 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEE-EEECSSSTT
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEE-EEccccccC
Confidence 996 544 88899999999999999999999999999999999999765 899999864
No 44
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.58 E-value=1.7e-14 Score=128.51 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=90.8
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccE---EE-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPI---TI-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLI 146 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~i---ti-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVV 146 (519)
+..|+|+|++|+|||||+++|++...........+.. ++ .......+.|+||||. +..+. ..+..+|.+++|+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVY 82 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEE
Confidence 4789999999999999999999763211111111111 11 1223456999999994 44433 4568899999999
Q ss_pred eCCCCCcccH-----HHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 147 DGSYGFEMET-----FEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 147 Das~g~e~et-----~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|++.+...+. .+++..+...+.| +++|+||+|+.............+...+ +.++|++||++|
T Consensus 83 d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~----- 150 (167)
T 1kao_A 83 SLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREVSSSEGRALAEEW------GCPFMETSAKSK----- 150 (167)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCSCHHHHHHHHHHH------TSCEEEECTTCH-----
T ss_pred eCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccCCHHHHHHHHHHh------CCCEEEecCCCC-----
Confidence 9986432111 1233333334677 5568999998642211111112222211 458999999865
Q ss_pred hHHHHHHHHHHhh
Q 010060 222 REIRNLARFISVM 234 (519)
Q Consensus 222 ~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 151 ~gi~~l~~~l~~~ 163 (167)
T 1kao_A 151 TMVDELFAEIVRQ 163 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 7788888776543
No 45
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.57 E-value=3e-14 Score=127.59 Aligned_cols=152 Identities=9% Similarity=0.049 Sum_probs=94.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCCC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSYG 151 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~g 151 (519)
..|+|+|++|||||||+++|++........+..-.+..+......+.++||||. +..+. ..+..||++|+|+|++.+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 369999999999999999998753221111111112233456688999999996 44443 457899999999999865
Q ss_pred C--cccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHH
Q 010060 152 F--EMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRN 226 (519)
Q Consensus 152 ~--e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~ 226 (519)
- +.....+..++.. .+.| +++|+||+|+.... ...++.+.+...+. .....++|++||++| .++.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~-----~gi~~ 151 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAM-NAAEITDKLGLHSL--RHRNWYIQATCATSG-----DGLYE 151 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHTTGGGC--SSCCEEEEECBTTTT-----BTHHH
T ss_pred HHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCC-CHHHHHHHhCcccc--cCccEEEEEcccCCC-----cCHHH
Confidence 2 2211223333322 2555 56699999997532 12233332211110 013457999999977 57888
Q ss_pred HHHHHHhhc
Q 010060 227 LARFISVMK 235 (519)
Q Consensus 227 LlR~I~~~~ 235 (519)
+...|....
T Consensus 152 l~~~l~~~i 160 (164)
T 1r8s_A 152 GLDWLSNQL 160 (164)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 887776554
No 46
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.57 E-value=2.3e-14 Score=130.03 Aligned_cols=154 Identities=13% Similarity=0.045 Sum_probs=95.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE--EEEe-c--CceeEEEEcCCCC--chh-HHHHhhccCEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI--TIVS-G--KQRRLQFVECPND--ING-MIDCAKIADLA 142 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i--ti~~-~--~~~rl~fIDtPGd--l~s-mld~ak~ADlV 142 (519)
.++..|+|+|++|||||||+++|++...... ..++.-.+ ..+. . ....+.++||||. +.. ....+..||++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 3568999999999999999999997632111 11110001 1111 1 2468999999995 333 44567899999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 143 LLLIDGSYGFEMET-FEFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 143 LLVVDas~g~e~et-~e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
|||+|++.+...+. ..++..+.. .+.|.+++|+||+|+........+....+...+ +.++|++||++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN------GFSSHFVSAKTG 157 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH------TCEEEEECTTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc------CCcEEEEeCCCC
Confidence 99999986432221 133333333 267877789999999642111011111221111 468999999977
Q ss_pred CcCChhHHHHHHHHHHhhcC
Q 010060 217 GKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|....+
T Consensus 158 -----~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 158 -----DSVFLCFQKVAAEIL 172 (178)
T ss_dssp -----TTHHHHHHHHHHHHT
T ss_pred -----CCHHHHHHHHHHHHH
Confidence 678888877766554
No 47
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.57 E-value=1.6e-14 Score=129.22 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=90.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE--E-EecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT--I-VSGKQRRLQFVECPND--INGM-IDCAKIADLALLLI 146 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVV 146 (519)
+..|+|+|.+|+|||||+++|++...... ..+....+. + .......+.|+||||. +..+ ...+..+|++++|+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 82 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVY 82 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEE
Confidence 47899999999999999999998531111 111101111 1 1233567999999995 4443 34578899999999
Q ss_pred eCCCCCcccH-H----HHHHHHHhcCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 147 DGSYGFEMET-F----EFLNLMQNHGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 147 Das~g~e~et-~----e~L~~L~~~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
|++.....+. . .++......+.| +++|+||+|+...... ..+.. .+.. ...+.++|++||++|
T Consensus 83 d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~-~~~~-----~~~~~~~~~~Sa~~~---- 151 (167)
T 1c1y_A 83 SITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVGKEQGQ-NLAR-----QWCNCAFLESSAKSK---- 151 (167)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCSCHHHHH-HHHH-----HTTSCEEEECBTTTT----
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccCCHHHHH-HHHH-----HccCCcEEEecCCCC----
Confidence 9975421111 1 222222234777 5568999999642211 11222 1211 124678999999977
Q ss_pred hhHHHHHHHHHHhh
Q 010060 221 KREIRNLARFISVM 234 (519)
Q Consensus 221 ~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 152 -~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 152 -INVNEIFYDLVRQ 164 (167)
T ss_dssp -BSHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 5777777776654
No 48
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.57 E-value=3e-14 Score=131.86 Aligned_cols=155 Identities=12% Similarity=0.123 Sum_probs=95.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC-c-cccccccEEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH-N-VPEVRGPITIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLI 146 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~-v~~~~G~iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVV 146 (519)
.++..|+|+|.+|||||||+++|++..... . ..++.-.+..+......+.||||||. +..++ ..+..+|++|||+
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 94 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVV 94 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence 455799999999999999999999864222 1 11111111223456789999999996 44433 4578999999999
Q ss_pred eCCCCCcccH-HHHHHHHHhc-----------CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecc
Q 010060 147 DGSYGFEMET-FEFLNLMQNH-----------GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGL 214 (519)
Q Consensus 147 Das~g~e~et-~e~L~~L~~~-----------GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl 214 (519)
|++.+..-+. .+.+..+... ++| +|+|+||+|+.... ...++.+.+...... -....++|.+||+
T Consensus 95 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 171 (199)
T 4bas_A 95 DSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDAAGAK-TAAELVEILDLTTLM-GDHPFVIFASNGL 171 (199)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTSTTCC-CHHHHHHHHTHHHHH-TTSCEEEEECBTT
T ss_pred ECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCCCCCC-CHHHHHHHhcchhhc-cCCeeEEEEeeCC
Confidence 9986532221 1233333222 677 55689999998642 222333333211110 1145689999999
Q ss_pred cCCcCChhHHHHHHHHHHhh
Q 010060 215 IHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 215 ~g~~Y~~~ei~~LlR~I~~~ 234 (519)
+| .++..+...|...
T Consensus 172 ~g-----~gv~~l~~~l~~~ 186 (199)
T 4bas_A 172 KG-----TGVHEGFSWLQET 186 (199)
T ss_dssp TT-----BTHHHHHHHHHHH
T ss_pred Cc-----cCHHHHHHHHHHH
Confidence 77 5677776665544
No 49
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.56 E-value=3.1e-14 Score=129.58 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=96.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE---EE-EecCceeEEEEcCCCC--chh-HHHHhhccCEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI---TI-VSGKQRRLQFVECPND--ING-MIDCAKIADLAL 143 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i---ti-~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVL 143 (519)
..+..|+|+|++|+|||||+++|++...... ...+...+ ++ +......+.|+||||. +.. ....++.+|++|
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 3457999999999999999999998632211 11111111 11 1223568999999995 333 345678899999
Q ss_pred EEEeCCCCCccc-HHHHHHHHHhc---CCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 144 LLIDGSYGFEME-TFEFLNLMQNH---GLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 144 LVVDas~g~e~e-t~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
||+|++.+...+ ...++..+... ++| +++|+||+|+...... ..+..+.++. .+.++|++||++|
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~g-- 159 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKVTAEDAQTYAQE-------NGLFFMETSAKTA-- 159 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCHHHHHHHHHH-------TTCEEEECCSSSC--
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccccCCHHHHHHHHHH-------cCCEEEEEECCCC--
Confidence 999998653322 22445555443 445 6668999999743211 1222221111 2468999999977
Q ss_pred CChhHHHHHHHHHHhhcCC
Q 010060 219 YSKREIRNLARFISVMKFP 237 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~~~r 237 (519)
.++..+...|.....+
T Consensus 160 ---~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 160 ---TNVKEIFYEIARRLPR 175 (181)
T ss_dssp ---TTHHHHHHHHHHTCC-
T ss_pred ---CCHHHHHHHHHHHHHh
Confidence 6788888888766543
No 50
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.56 E-value=2.6e-14 Score=128.23 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=95.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccc-cEE---E-EecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PIT---I-VSGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~it---i-~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
+...|+|+|++|+|||||+++|++...........| .+. + .......+.++||||. +.. ....+..+|++|+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 357999999999999999999998742211111112 111 1 1223468999999995 334 3456789999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHhcCCC--eEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 145 LIDGSYGFEMET-FEFLNLMQNHGLP--RVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~~GiP--~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|+|++.+...+. ..++..+...+.+ .+++|+||+|+........+....+... .+.++|++||+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~~Sa~~~----- 153 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS------IHAIFVETSAKNA----- 153 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH------TTCEEEECBTTTT-----
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHH------cCCEEEEEeCCCC-----
Confidence 999986533222 2445555543222 4666899999974221111112222211 2468999999976
Q ss_pred hHHHHHHHHHHhhc
Q 010060 222 REIRNLARFISVMK 235 (519)
Q Consensus 222 ~ei~~LlR~I~~~~ 235 (519)
.++..+...|....
T Consensus 154 ~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 154 ININELFIEISRRI 167 (170)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHH
Confidence 67788887776654
No 51
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.56 E-value=9.6e-14 Score=127.52 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=91.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc-cEE--EEecC--c-----------------------------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PIT--IVSGK--Q----------------------------- 117 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~it--i~~~~--~----------------------------- 117 (519)
..+..|+|+|++|+|||||+++|++..-........| .+. .+... .
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 4568999999999999999999998631111000001 000 01111 1
Q ss_pred --------eeEEEEcCCCC--chh-HHHHhhccCEEEEEEeCCCCCcccH-HHHHHHHHh-cCCCeEEEEEEccCCCCCH
Q 010060 118 --------RRLQFVECPND--ING-MIDCAKIADLALLLIDGSYGFEMET-FEFLNLMQN-HGLPRVMGVLTHLDKFKDV 184 (519)
Q Consensus 118 --------~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDas~g~e~et-~e~L~~L~~-~GiP~VI~VlNKlDl~~~~ 184 (519)
..+.||||||. +.. +...+..||++|||+|++.+...+. ..++..+.. .+. .+++|+||+|+....
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~-piilv~NK~D~~~~~ 163 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNY-IIILVANKIDKNKFQ 163 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCC-EEEEEEECTTCC-CC
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCC-cEEEEEECCCccccc
Confidence 68999999995 333 4567789999999999986533222 234444433 454 467799999942211
Q ss_pred HHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 185 KKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 185 k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
....+..+.+.. .+.++|++||+++ .++..+...|...
T Consensus 164 ~~~~~~~~~~~~-------~~~~~~~~Sa~~~-----~~i~~l~~~l~~~ 201 (208)
T 3clv_A 164 VDILEVQKYAQD-------NNLLFIQTSAKTG-----TNIKNIFYMLAEE 201 (208)
T ss_dssp SCHHHHHHHHHH-------TTCEEEEECTTTC-----TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-------cCCcEEEEecCCC-----CCHHHHHHHHHHH
Confidence 122333332222 2468999999977 5666666665543
No 52
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.55 E-value=3.4e-14 Score=131.75 Aligned_cols=155 Identities=10% Similarity=0.122 Sum_probs=97.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC-ccccccccEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEEe
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALLLID 147 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVD 147 (519)
...+.|+|+|.+|||||||+++|++..... ...++.-.+..+......+.||||||. +.. ....+..||++|||+|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 99 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVD 99 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEE
Confidence 345899999999999999999999753221 111111112223455788999999996 333 3345789999999999
Q ss_pred CCCCCccc--HHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEME--TFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~e--t~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
++.....+ ...+..++.. .++| +++|+||+|+.... ...++.+.+...+ ....+.++|++||++| .
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~SA~~g-----~ 170 (188)
T 1zd9_A 100 AADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGAL-DEKELIEKMNLSA--IQDREICCYSISCKEK-----D 170 (188)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCC-CHHHHHHHTTGGG--CCSSCEEEEECCTTTC-----T
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccCC-CHHHHHHHhChhh--hccCCeeEEEEECCCC-----C
Confidence 97542222 1233333332 5677 55689999997532 1222332221111 0123567899999977 6
Q ss_pred HHHHHHHHHHhhc
Q 010060 223 EIRNLARFISVMK 235 (519)
Q Consensus 223 ei~~LlR~I~~~~ 235 (519)
++..+...|....
T Consensus 171 gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 171 NIDITLQWLIQHS 183 (188)
T ss_dssp THHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHH
Confidence 7888888777654
No 53
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=3.7e-14 Score=127.24 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=92.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC-ccccccccEE-E--EecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPIT-I--VSGKQRRLQFVECPND--ING-MIDCAKIADLALLLI 146 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~it-i--~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVV 146 (519)
...|+|+|++|+|||||+++|++..... ........+. . .......+.|+||||. +.. ....+..+|++|+|+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 82 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 82 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEE
Confidence 4789999999999999999999863221 1111111111 1 1223457899999995 344 334578899999999
Q ss_pred eCCCCCccc-HHHHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 147 DGSYGFEME-TFEFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 147 Das~g~e~e-t~e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
|++.+...+ ...++..+.. .++| +++|+||+|+.............+...+ +.++|++||++|
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~Sa~~~---- 151 (172)
T 2erx_A 83 SITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSREVQSSEAEALARTW------KCAFMETSAKLN---- 151 (172)
T ss_dssp ETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCCSCHHHHHHHHHHH------TCEEEECBTTTT----
T ss_pred ECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccccccCHHHHHHHHHHh------CCeEEEecCCCC----
Confidence 998542211 1233333332 3677 5568999998642211111111121111 468999999976
Q ss_pred hhHHHHHHHHHHhhcC
Q 010060 221 KREIRNLARFISVMKF 236 (519)
Q Consensus 221 ~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 152 -~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 152 -HNVKELFQELLNLEK 166 (172)
T ss_dssp -BSHHHHHHHHHHTCC
T ss_pred -cCHHHHHHHHHHHHh
Confidence 678888887776543
No 54
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.55 E-value=3e-14 Score=131.00 Aligned_cols=156 Identities=10% Similarity=0.071 Sum_probs=96.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEEeC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALLLIDG 148 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDa 148 (519)
.++..|+|+|++|||||||+++|++........++.-.+..+......+.++||||. +.. ....++.+|++|+|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence 566899999999999999999999865211111111111122335688999999996 333 33457899999999999
Q ss_pred CCCCcccH--HHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 149 SYGFEMET--FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 149 s~g~e~et--~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
+.+...+. ..+..++.. .+.| +++|+||+|+.... ...++.+.+.... ....+.++|++||++| .+
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~-----~g 166 (186)
T 1ksh_A 96 ADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGAL-SCNAIQEALELDS--IRSHHWRIQGCSAVTG-----ED 166 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHTTGGG--CCSSCEEEEECCTTTC-----TT
T ss_pred cCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCCC-CHHHHHHHhChhh--ccCCceEEEEeeCCCC-----CC
Confidence 86532222 223333332 3566 66699999997532 2223332221100 0123568999999977 56
Q ss_pred HHHHHHHHHhhcC
Q 010060 224 IRNLARFISVMKF 236 (519)
Q Consensus 224 i~~LlR~I~~~~~ 236 (519)
+..+...|.....
T Consensus 167 i~~l~~~l~~~i~ 179 (186)
T 1ksh_A 167 LLPGIDWLLDDIS 179 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776665543
No 55
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.55 E-value=5.5e-14 Score=128.63 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=90.0
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCcc-cccccc-EEEE--ecCceeEEEEcCCCC--chh-HHHHhhccCEEE
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVRGP-ITIV--SGKQRRLQFVECPND--ING-MIDCAKIADLAL 143 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~G~-iti~--~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVL 143 (519)
..+.+.|+|+|.+|+|||||+++|++....... ...... .... ......+.++||||. +.. ....++.+|++|
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 455689999999999999999999976311111 111001 1111 223345777999996 333 344578899999
Q ss_pred EEEeCCCCCc-----ccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecc-cCC
Q 010060 144 LLIDGSYGFE-----METFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGL-IHG 217 (519)
Q Consensus 144 LVVDas~g~e-----~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl-~g~ 217 (519)
+|+|++.+.. .+..+++......++| +++|+||+|+........+....+...+ +.++|++||+ ++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~Sa~~~~- 166 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRKVTRDQGKEMATKY------NIPYIETSAKDPP- 166 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCCSCHHHHHHHHHHH------TCCEEEEBCSSSC-
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhccCcCHHHHHHHHHHh------CCeEEEeccCCCC-
Confidence 9999986421 1112333333345677 5568999998742211111122222222 3679999998 66
Q ss_pred cCChhHHHHHHHHHHh
Q 010060 218 KYSKREIRNLARFISV 233 (519)
Q Consensus 218 ~Y~~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 167 ----~~v~~l~~~l~~ 178 (183)
T 3kkq_A 167 ----LNVDKTFHDLVR 178 (183)
T ss_dssp ----BSHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHH
Confidence 456666655543
No 56
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.55 E-value=4.6e-14 Score=126.34 Aligned_cols=150 Identities=14% Similarity=0.195 Sum_probs=93.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCcccccccc-E---EE-EecCceeEEEEcCCCC--chh-HHHHhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP-I---TI-VSGKQRRLQFVECPND--ING-MIDCAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~-i---ti-~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLV 145 (519)
+..|+|+|++|+|||||+++|++...........|. + .+ .......+.++||||. +.. ....+..+|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 478999999999999999999976422111111110 1 11 1223458999999995 334 44567899999999
Q ss_pred EeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCC---HHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 146 IDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKD---VKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~---~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
+|++.+...+. ..++..+.. .++| +++|+||+|+... .....+....+... .+.++|++||++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~------~~~~~~~~Sa~~~-- 153 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGERKVAREEGEKLAEE------KGLLFFETSAKTG-- 153 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCCCCSCHHHHHHHHHH------HTCEEEECCTTTC--
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccccCCCHHHHHHHHHH------cCCEEEEEeCCCC--
Confidence 99986432222 133333332 3555 6668999999743 11111111222111 1468999999977
Q ss_pred CChhHHHHHHHHHHhhc
Q 010060 219 YSKREIRNLARFISVMK 235 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~~ 235 (519)
.++..+...|....
T Consensus 154 ---~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 154 ---ENVNDVFLGIGEKI 167 (170)
T ss_dssp ---TTHHHHHHHHHTTS
T ss_pred ---CCHHHHHHHHHHHH
Confidence 67888888777654
No 57
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.55 E-value=5.4e-14 Score=128.69 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=90.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc-CccccccccE---EEEecC-----------ceeEEEEcCCCC--chh-HHH
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPEVRGPI---TIVSGK-----------QRRLQFVECPND--ING-MID 134 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~~~G~i---ti~~~~-----------~~rl~fIDtPGd--l~s-mld 134 (519)
.++.|+|+|++|+|||||+++|++.... .....+...+ ..+... ...+.|+||||. +.. ...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 89 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA 89 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHH
Confidence 4589999999999999999999975321 1111111111 112111 458999999996 334 445
Q ss_pred HhhccCEEEEEEeCCCCCcccH-HHHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEE
Q 010060 135 CAKIADLALLLIDGSYGFEMET-FEFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLF 209 (519)
Q Consensus 135 ~ak~ADlVLLVVDas~g~e~et-~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf 209 (519)
.+..||++|||+|++.+...+. ..++..+.. .++| +++|+||+|+........+....+...+ +.++|
T Consensus 90 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~ 162 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAVKEEEARELAEKY------GIPYF 162 (195)
T ss_dssp TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCCSCHHHHHHHHHHH------TCCEE
T ss_pred HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccCHHHHHHHHHHc------CCCEE
Confidence 6789999999999986443322 234444443 4666 5568999999642111111111221111 45899
Q ss_pred EEecccCCcCChhHHHHHHHHHHh
Q 010060 210 YLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 210 ~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
++||+++ .++..+...|..
T Consensus 163 ~~Sa~~~-----~~v~~l~~~l~~ 181 (195)
T 3bc1_A 163 ETSAANG-----TNISHAIEMLLD 181 (195)
T ss_dssp ECCTTTC-----TTHHHHHHHHHH
T ss_pred EEECCCC-----CCHHHHHHHHHH
Confidence 9999977 456666555443
No 58
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.54 E-value=4.7e-14 Score=130.55 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=96.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc--ccCcccccccc-EEEEecCceeEEEEcCCCC--chhH-HHHhhccCEEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY--TKHNVPEVRGP-ITIVSGKQRRLQFVECPND--INGM-IDCAKIADLALLL 145 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~--Tr~~v~~~~G~-iti~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLV 145 (519)
.....|+|+|.+|||||||+++|++.. ......+ .+. +..+...+..+.|+||||. +..+ ...+..||++|||
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPT-IGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCC-SSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCc-cceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 446899999999999999999999874 2111111 121 1123344678999999994 4443 3567899999999
Q ss_pred EeCCCC--CcccHHHHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhc-cCCceEEEEecccCC
Q 010060 146 IDGSYG--FEMETFEFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEI-YDGAKLFYLSGLIHG 217 (519)
Q Consensus 146 VDas~g--~e~et~e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~-~~~~kVf~lSAl~g~ 217 (519)
+|++.+ +......+..++.. .++| +++|+||+|+.... ...++.+.+. ...+ ..+.++|++||++|
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~- 171 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAV-TSVKVSQLLC---LENIKDKPWHICASDAIKG- 171 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTSTTCC-CHHHHHHHHT---GGGCCSSCEEEEECBTTTT-
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcccCC-CHHHHHHHhC---hhhccCCceEEEEccCCCC-
Confidence 999864 22222233344443 3666 55689999997532 2233333221 0111 13568999999977
Q ss_pred cCChhHHHHHHHHHHhhc
Q 010060 218 KYSKREIRNLARFISVMK 235 (519)
Q Consensus 218 ~Y~~~ei~~LlR~I~~~~ 235 (519)
.++..+...|....
T Consensus 172 ----~gi~~l~~~l~~~i 185 (190)
T 2h57_A 172 ----EGLQEGVDWLQDQI 185 (190)
T ss_dssp ----BTHHHHHHHHHHHC
T ss_pred ----cCHHHHHHHHHHHH
Confidence 57777777776543
No 59
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=3e-14 Score=129.59 Aligned_cols=152 Identities=17% Similarity=0.188 Sum_probs=90.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc--CccccccccEE--E--EecCceeEEEEcCCCC--chh-HHHHhhccCEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK--HNVPEVRGPIT--I--VSGKQRRLQFVECPND--ING-MIDCAKIADLA 142 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--~~v~~~~G~it--i--~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlV 142 (519)
.++..|+|+|++|+|||||+++|++.... .......-.+. . ..+....+.++||||. +.. ....+..+|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 44689999999999999999999986421 11111111111 1 1223458999999995 333 33457899999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 143 LLLIDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 143 LLVVDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
|+|+|++.+...+. ..++..+.. .++| +++|+||+|+........+....+...+ +.++|++||+++
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~-- 158 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERVVKREDGEKLAKEY------GLPFMETSAKTG-- 158 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCCSCHHHHHHHHHHH------TCCEEECCTTTC--
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCcccccCHHHHHHHHHHc------CCeEEEEeCCCC--
Confidence 99999986432221 233443333 4566 5568999999753211111112222111 458999999977
Q ss_pred CChhHHHHHHHHHHhhc
Q 010060 219 YSKREIRNLARFISVMK 235 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~~ 235 (519)
.++..+...|....
T Consensus 159 ---~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 159 ---LNVDLAFTAIAKEL 172 (180)
T ss_dssp ---TTHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHH
Confidence 56777776665543
No 60
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.53 E-value=4.6e-14 Score=129.09 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=87.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccc-cccccEE--E-EecCceeEEEEcCCCC--chhH-HHHhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVP-EVRGPIT--I-VSGKQRRLQFVECPND--INGM-IDCAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~-~~~G~it--i-~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLV 145 (519)
++..|+|+|++|+|||||+++|++........ .....+. + ..+....+.|+||||. +..+ ...+..+|++|+|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 45799999999999999999999763111111 1100111 1 1233456888999995 4443 3457889999999
Q ss_pred EeCCCCCcccH-HHHHHHH----HhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 146 IDGSYGFEMET-FEFLNLM----QNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L----~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|++.....+. ...+..+ ...+.| +++|+||+|+...... .+....+...+ +.++|++||++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~-~~~~~~~~~~~------~~~~~~~Sa~~g---- 150 (189)
T 4dsu_A 83 FAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRTVD-TKQAQDLARSY------GIPFIETSAKTR---- 150 (189)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCSSC-HHHHHHHHHHH------TCCEEECCTTTC----
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccccC-HHHHHHHHHHc------CCeEEEEeCCCC----
Confidence 99985422111 1222222 234677 5568999999743211 12222222222 467999999977
Q ss_pred hhHHHHHHHHHHh
Q 010060 221 KREIRNLARFISV 233 (519)
Q Consensus 221 ~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 151 -~gi~~l~~~l~~ 162 (189)
T 4dsu_A 151 -QGVDDAFYTLVR 162 (189)
T ss_dssp -TTHHHHHHHHHH
T ss_pred -CCHHHHHHHHHH
Confidence 456665554443
No 61
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.53 E-value=5.1e-14 Score=131.57 Aligned_cols=156 Identities=9% Similarity=0.050 Sum_probs=94.5
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEEe
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGM-IDCAKIADLALLLID 147 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVVD 147 (519)
..+...|+|+|++|||||||+++|++........++.-.+..+......+.++||||. +..+ ...+..||++|+|+|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D 105 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 105 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 3456899999999999999999998653111111111111123345688999999995 4443 356789999999999
Q ss_pred CCCCCccc--HHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChh
Q 010060 148 GSYGFEME--TFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKR 222 (519)
Q Consensus 148 as~g~e~e--t~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ 222 (519)
++.+...+ ...+..++.. .+.| +++|+||+|+.... ...++.+.+...+ ......++|++||++| .
T Consensus 106 ~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~~~~--~~~~~~~~~~~SA~~g-----~ 176 (192)
T 2b6h_A 106 SNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNAM-PVSELTDKLGLQH--LRSRTWYVQATCATQG-----T 176 (192)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHTTGGG--CSSCCEEEEECBTTTT-----B
T ss_pred CCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCCC-CHHHHHHHhCccc--ccCCceEEEECcCCCc-----C
Confidence 98653222 1223233322 2566 56689999997532 2233333221111 0113457999999977 6
Q ss_pred HHHHHHHHHHhhc
Q 010060 223 EIRNLARFISVMK 235 (519)
Q Consensus 223 ei~~LlR~I~~~~ 235 (519)
++.++...|....
T Consensus 177 gi~~l~~~l~~~i 189 (192)
T 2b6h_A 177 GLYDGLDWLSHEL 189 (192)
T ss_dssp THHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH
Confidence 7888887776543
No 62
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.53 E-value=8.4e-14 Score=124.66 Aligned_cols=151 Identities=12% Similarity=0.107 Sum_probs=93.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccc-cE---EEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI---TIV-SGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i---ti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
++..|+|+|++|+|||||+++|++...........| .+ ++. ......+.++||||. +.. ....+..+|++|+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 357899999999999999999997532211111111 01 111 223568999999996 334 3456788999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHhc---CCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQNH---GLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|+|++.+...+. ..++..+... ++| +++|+||+|+..... ...+..+... . .+.++|++||++|
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~~~~~~~~~~~~~-~------~~~~~~~~Sa~~g--- 153 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLANKRAVDFQEAQSYAD-D------NSLLFMETSAKTS--- 153 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCHHHHHHHHH-H------TTCEEEECCTTTC---
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccccCHHHHHHHHH-H------cCCeEEEEeCCCC---
Confidence 999986532221 2334444332 444 556889999864211 1122222111 1 2568999999977
Q ss_pred ChhHHHHHHHHHHhhcC
Q 010060 220 SKREIRNLARFISVMKF 236 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 154 --~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 154 --MNVNEIFMAIAKKLP 168 (170)
T ss_dssp --TTHHHHHHHHHHTSC
T ss_pred --CCHHHHHHHHHHHHh
Confidence 678888887776543
No 63
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.53 E-value=6.4e-14 Score=124.92 Aligned_cols=149 Identities=11% Similarity=0.140 Sum_probs=89.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcc-ccccccEE--E-EecCceeEEEEcCCCC--chhH-HHHhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVRGPIT--I-VSGKQRRLQFVECPND--INGM-IDCAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~G~it--i-~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLV 145 (519)
+++.|+|+|++|+|||||+++|++....... ......+. + .......+.|+||||. +..+ ...+..+|++|+|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 4589999999999999999999986311111 11111111 1 1223457999999995 4443 3457889999999
Q ss_pred EeCCCCCcccH-HHHHHHHH----hcCCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 146 IDGSYGFEMET-FEFLNLMQ----NHGLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L~----~~GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
+|++.....+. ..++..+. ..++| +++|+||+|+..... ...+..+.++. + +.++|++||+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~-~------~~~~~~~Sa~~~--- 151 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQVSVEEAKNRADQ-W------NVNYVETSAKTR--- 151 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCCSCHHHHHHHHHH-H------TCEEEECCTTTC---
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccccCccCHHHHHHHHHH-c------CCeEEEeCCCCC---
Confidence 99985432111 12222222 23677 556899999964211 11222222211 1 358999999977
Q ss_pred ChhHHHHHHHHHHhh
Q 010060 220 SKREIRNLARFISVM 234 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 152 --~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 152 --ANVDKVFFDLMRE 164 (168)
T ss_dssp --TTHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 5677777666544
No 64
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.53 E-value=5.1e-14 Score=127.61 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=89.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE-EE--ecCceeEEEEcCCCC--chh-HHHHhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT-IV--SGKQRRLQFVECPND--ING-MIDCAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it-i~--~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLV 145 (519)
.++.|+|+|.+|+|||||+++|++...... ..+....+. .. .+....+.|+||||. +.. ....+..+|++|+|
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLV 87 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEE
Confidence 457999999999999999999998631111 111111111 11 222457899999995 333 34457889999999
Q ss_pred EeCCCCCcccH-----HHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 146 IDGSYGFEMET-----FEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 146 VDas~g~e~et-----~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|++....... .+++......++| +++|+||+|+.............+... .+.++|++||++|
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~~Sa~~~---- 156 (181)
T 2fn4_A 88 FAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQRQVPRSEASAFGAS------HHVAYFEASAKLR---- 156 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGGCCSCHHHHHHHHHH------TTCEEEECBTTTT----
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccCHHHHHHHHHH------cCCeEEEecCCCC----
Confidence 99985322111 1233333345777 556899999974211111111222111 2568999999977
Q ss_pred hhHHHHHHHHHHhh
Q 010060 221 KREIRNLARFISVM 234 (519)
Q Consensus 221 ~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 157 -~gv~~l~~~l~~~ 169 (181)
T 2fn4_A 157 -LNVDEAFEQLVRA 169 (181)
T ss_dssp -BSHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 4566666555443
No 65
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.53 E-value=3.7e-14 Score=130.45 Aligned_cols=153 Identities=9% Similarity=0.099 Sum_probs=93.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEEeC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALLLIDG 148 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDa 148 (519)
.....|+|+|.+|+|||||+++|++........++.-.+..+...+..+.++||||. +.. ....+..+|++|||+|+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 98 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 98 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEET
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 446899999999999999999999863211111111111122335688999999996 333 34567899999999999
Q ss_pred CCCCccc--HHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 149 SYGFEME--TFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 149 s~g~e~e--t~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
+.....+ ...+..++.. .++| +++|+||+|+.... ...++.+.+.... ....+.++|++||++| .+
T Consensus 99 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~~~~--~~~~~~~~~~~Sa~~g-----~g 169 (181)
T 2h17_A 99 TDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECM-TVAEISQFLKLTS--IKDHQWHIQACCALTG-----EG 169 (181)
T ss_dssp TCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHTTGGG--CCSSCEEEEECBTTTT-----BT
T ss_pred CCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCC-CHHHHHHHhCccc--ccCCceEEEEccCCCC-----cC
Confidence 8653222 2233333332 4566 56689999997531 1223332221100 0113458999999977 57
Q ss_pred HHHHHHHHHh
Q 010060 224 IRNLARFISV 233 (519)
Q Consensus 224 i~~LlR~I~~ 233 (519)
+.++...|..
T Consensus 170 i~~l~~~l~~ 179 (181)
T 2h17_A 170 LCQGLEWMMS 179 (181)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7777777653
No 66
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.52 E-value=1.6e-13 Score=128.27 Aligned_cols=156 Identities=11% Similarity=0.031 Sum_probs=96.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCcccc---ccccEEEE--ecCceeEEEEcCCCC--chhH----HHHhhccC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE---VRGPITIV--SGKQRRLQFVECPND--INGM----IDCAKIAD 140 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~---~~G~iti~--~~~~~rl~fIDtPGd--l~sm----ld~ak~AD 140 (519)
.....|+|+|.+|||||||++.|.+.+....... ....+... ......+.+|||||. +..+ ...++.||
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTG 97 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCC
Confidence 3457999999999999999999998643221111 11222221 245678999999995 4443 46788999
Q ss_pred EEEEEEeCCCCCcccHHHHHHHHHh-----cCCCeEEEEEEccCCCCCHHH---HHHHHHHHHHhhhhhc--cCCceEEE
Q 010060 141 LALLLIDGSYGFEMETFEFLNLMQN-----HGLPRVMGVLTHLDKFKDVKK---LRKTKQRLKHRFWTEI--YDGAKLFY 210 (519)
Q Consensus 141 lVLLVVDas~g~e~et~e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~---l~~~kk~Lk~~f~~e~--~~~~kVf~ 210 (519)
++|||+|++..+......+..++.. .++| +++|.||+|+..+... .+.+.......+.... ..+.++|.
T Consensus 98 ~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e 176 (196)
T 3llu_A 98 ALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYL 176 (196)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred EEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEE
Confidence 9999999987643332333333332 3556 5668999999864322 1222222222222222 23568999
Q ss_pred EecccCCcCChhHHHHHHHHHHhh
Q 010060 211 LSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 211 lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
+||+ . .++..+...|...
T Consensus 177 ~Sa~-----~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 177 TSIY-----D-HSIFEAFSKVVQK 194 (196)
T ss_dssp ECTT-----S-THHHHHHHHHHHH
T ss_pred EEec-----h-hhHHHHHHHHHHH
Confidence 9997 4 5777777766543
No 67
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.52 E-value=8.6e-14 Score=128.48 Aligned_cols=151 Identities=13% Similarity=0.107 Sum_probs=91.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc-cE--EEE--ecCceeEEEEcCCCC--chh-HHHHhhccCEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI--TIV--SGKQRRLQFVECPND--ING-MIDCAKIADLAL 143 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i--ti~--~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVL 143 (519)
..++.|+|+|++|+|||||+++|++...........+ .+ ..+ ......+.|+||||. +.. ....+..+|++|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 3457999999999999999999998632211110011 01 111 123357999999995 333 445678999999
Q ss_pred EEEeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 144 LLIDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 144 LVVDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
||+|++.....+. ..++..+.. .++| +++|+||+|+.............+...+ +.++|++||+++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~g--- 163 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVDYTTAKEFADSL------GIPFLETSAKNA--- 163 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCHHHHHHHHHHT------TCCEEEECTTTC---
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccCHHHHHHHHHHc------CCcEEEEeCCCC---
Confidence 9999986432111 233443433 2556 5568999999753211111122222222 468999999977
Q ss_pred ChhHHHHHHHHHHhh
Q 010060 220 SKREIRNLARFISVM 234 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 164 --~gv~~l~~~l~~~ 176 (196)
T 3tkl_A 164 --TNVEQSFMTMAAE 176 (196)
T ss_dssp --TTHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 5666666555544
No 68
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.52 E-value=3.7e-14 Score=129.55 Aligned_cols=152 Identities=15% Similarity=0.141 Sum_probs=89.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcc-ccccccE-EEE--ecCceeEEEEcCCCC--chh-HHHHhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVRGPI-TIV--SGKQRRLQFVECPND--ING-MIDCAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~G~i-ti~--~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLV 145 (519)
.++.|+|+|.+|+|||||+++|+........ ......+ ... .+....+.|+||||. +.. ....+..+|++|+|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence 3579999999999999999999965311111 1111111 111 223467899999995 333 23456789999999
Q ss_pred EeCCCCCcccH-----HHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 146 IDGSYGFEMET-----FEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 146 VDas~g~e~et-----~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|++.....+. .+++..+...++| +++|+||+|+........+....+...+ +.++|++||++|
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~---- 153 (181)
T 3t5g_A 85 YSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVISYEEGKALAESW------NAAFLESSAKEN---- 153 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCSCHHHHHHHHHHT------TCEEEECCTTSH----
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcceecHHHHHHHHHHh------CCcEEEEecCCC----
Confidence 99975322111 1233333334677 5568999998643211111122222211 568999999966
Q ss_pred hhHHHHHHHHHHhhcC
Q 010060 221 KREIRNLARFISVMKF 236 (519)
Q Consensus 221 ~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 154 -~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 154 -QTAVDVFRRIILEAE 168 (181)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHH
Confidence 778888877665543
No 69
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.52 E-value=7.8e-14 Score=126.17 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=92.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccc-cEE--EE--ecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PIT--IV--SGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~it--i~--~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
..+.|+|+|.+|+|||||+++|++...........+ .+. .+ ......+.|+||||. +.. ....++.+|++|+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEE
Confidence 358999999999999999999998642111111111 111 11 223467999999995 333 4456789999999
Q ss_pred EEeCCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 145 LIDGSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 145 VVDas~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|+|++.+...+.. .++..+.. .+.| +++|+||+|+...... ..+..+.++. .+.++|++||+++
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~--- 162 (179)
T 1z0f_A 94 VYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDVTYEEAKQFAEE-------NGLLFLEASAKTG--- 162 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTC---
T ss_pred EEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccCHHHHHHHHHH-------cCCEEEEEeCCCC---
Confidence 9999865322221 33333332 3555 6678999999642111 1222222211 2468999999977
Q ss_pred ChhHHHHHHHHHHhhc
Q 010060 220 SKREIRNLARFISVMK 235 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~~ 235 (519)
.++..+...|....
T Consensus 163 --~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 163 --ENVEDAFLEAAKKI 176 (179)
T ss_dssp --TTHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHH
Confidence 56777776665543
No 70
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.52 E-value=1.2e-13 Score=125.85 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=96.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc-cCccccccccE--EE-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPI--TI-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~i--ti-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLV 145 (519)
....|+|+|++|+|||||+++|++..- ..........+ ++ ..+....+.|+||||. +..+. ..+..+|++|+|
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 83 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC 83 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEE
Confidence 357899999999999999999997531 11111111111 11 1233567889999996 33332 356889999999
Q ss_pred EeCCCCCcccHH--HHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHHH---------HHHHhhhhhccCCceEEEEe
Q 010060 146 IDGSYGFEMETF--EFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTKQ---------RLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 146 VDas~g~e~et~--e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~kk---------~Lk~~f~~e~~~~~kVf~lS 212 (519)
+|++.+...+.. .++..+... ++| +++|+||+|+.........+.. .... + .......++|++|
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~~~~~~~~S 160 (186)
T 1mh1_A 84 FSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA-M-AKEIGAVKYLECS 160 (186)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH-H-HHHTTCSEEEECC
T ss_pred EECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccccccchhhhhhcccccccCCHHHHHH-H-HHhcCCcEEEEec
Confidence 999864332222 344555443 677 5568999999764322111110 0111 1 1112335899999
Q ss_pred cccCCcCChhHHHHHHHHHHhhcCCC
Q 010060 213 GLIHGKYSKREIRNLARFISVMKFPP 238 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~~~~~r~ 238 (519)
|++| .++..+...|......+
T Consensus 161 a~~g-----~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQ-----RGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTC-----TTHHHHHHHHHHHHSCC
T ss_pred CCCc-----cCHHHHHHHHHHHHhcc
Confidence 9977 67888887777666543
No 71
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.52 E-value=6.3e-14 Score=129.61 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=91.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE---EEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI---TIV-SGKQRRLQFVECPND--ING-MIDCAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLV 145 (519)
.+.|+|+|.+|+|||||+++|++...... ...+.-.+ ++. ......+.|+||||. +.. ....+..||++|||
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 101 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLM 101 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEE
Confidence 57999999999999999999998642111 11111111 111 233568999999995 333 44567899999999
Q ss_pred EeCCCCCccc-HHHHHHHHHhc---CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 146 IDGSYGFEME-TFEFLNLMQNH---GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 146 VDas~g~e~e-t~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
+|++.+...+ ...++..+... +.| +++|+||+|+........+..+.+...+ +.++|++||++|
T Consensus 102 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~g----- 169 (189)
T 2gf9_A 102 YDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDERVVPAEDGRRLADDL------GFEFFEASAKEN----- 169 (189)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEEEECBTTTT-----
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccCCCHHHHHHHHHHc------CCeEEEEECCCC-----
Confidence 9997543222 22445555443 555 6679999999742111111112222222 358999999977
Q ss_pred hHHHHHHHHHHhh
Q 010060 222 REIRNLARFISVM 234 (519)
Q Consensus 222 ~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 170 ~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 170 INVKQVFERLVDV 182 (189)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5666666555543
No 72
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.52 E-value=8.9e-14 Score=130.05 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=90.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc-c---EEE-EecCceeEEEEcCCCC--chh-HHHHhhccCEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-P---ITI-VSGKQRRLQFVECPND--ING-MIDCAKIADLAL 143 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~---iti-~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVL 143 (519)
..++.|+|+|.+|+|||||+++|++..-........| . .++ +......+.|+||||. +.. ....+..+|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 4568999999999999999999997632111111111 0 111 1233467999999995 444 445678999999
Q ss_pred EEEeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCH------HHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 144 LLIDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDV------KKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 144 LVVDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~------k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
||+|++.+...+. ..++..+.. .++| +++|+||+|+.... ....+....+...+ +.++|++||
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~SA 178 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY------GALFCETSA 178 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH------TCEEEECCT
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccccccccCHHHHHHHHHHc------CCeEEEeeC
Confidence 9999986433222 233444433 3677 55689999986210 00011111121111 468999999
Q ss_pred ccCCcCChhHHHHHHHHHHhhc
Q 010060 214 LIHGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~~~ 235 (519)
++| .++.++...|....
T Consensus 179 ~~g-----~gv~el~~~l~~~i 195 (199)
T 2p5s_A 179 KDG-----SNIVEAVLHLAREV 195 (199)
T ss_dssp TTC-----TTHHHHHHHHHHHH
T ss_pred CCC-----CCHHHHHHHHHHHH
Confidence 977 56777776666543
No 73
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=1.2e-13 Score=128.39 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=96.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcccccccc-EE---EE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP-IT---IV-SGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~-it---i~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
..+.|+|+|.+|+|||||+++|++...........|. +. +. ......+.||||||. +.. ....+..+|++||
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 101 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI 101 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEE
Confidence 3589999999999999999999986422111111121 11 11 234568999999995 334 3456789999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHhc---CCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQNH---GLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|+|++.....+. ..++..+... ++| +++|+||+|+..... ...+..+.+ .. .+.++|++||+++
T Consensus 102 V~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~v~~~~~~~~~-~~------~~~~~~~~Sa~~~--- 170 (192)
T 2fg5_A 102 VYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDLSDIREVPLKDAKEYA-ES------IGAIVVETSAKNA--- 170 (192)
T ss_dssp EEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCHHHHHHHH-HT------TTCEEEECBTTTT---
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccCHHHHHHHH-HH------cCCEEEEEeCCCC---
Confidence 999986533222 2344444433 555 566899999964211 112222221 11 2468999999976
Q ss_pred ChhHHHHHHHHHHhhcC
Q 010060 220 SKREIRNLARFISVMKF 236 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 171 --~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 171 --INIEELFQGISRQIP 185 (192)
T ss_dssp --BSHHHHHHHHHHTCC
T ss_pred --cCHHHHHHHHHHHHH
Confidence 678888888876554
No 74
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.51 E-value=1.4e-13 Score=124.67 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=91.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcccccccc-E---EE-EecCceeEEEEcCCCC--chhH-HHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP-I---TI-VSGKQRRLQFVECPND--INGM-IDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~-i---ti-~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLL 144 (519)
.+..|+|+|++|+|||||+++|++...........|. + ++ ..+....+.|+||||. +..+ ...++.+|++|+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 85 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence 4579999999999999999999976321111111110 1 11 1122358999999995 3333 345688999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHh-------cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQN-------HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~-------~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
|+|++.+...+. ..++..+.. .++| +++|+||+|+........+..+.++ .....++|++||++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISERQVSTEEAQAWCR------DNGDYPYFETSAKDA 158 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSCSSCHHHHHHHHH------HTTCCCEEECCTTTC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcccccccCHHHHHHHHH------hcCCceEEEEeCCCC
Confidence 999986432221 122232221 4566 5568999999732211222222221 124578999999977
Q ss_pred CcCChhHHHHHHHHHHhhc
Q 010060 217 GKYSKREIRNLARFISVMK 235 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~~ 235 (519)
.++..+...|....
T Consensus 159 -----~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 159 -----TNVAAAFEEAVRRV 172 (177)
T ss_dssp -----TTHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHH
Confidence 57777776665543
No 75
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.51 E-value=8.4e-14 Score=126.84 Aligned_cols=149 Identities=11% Similarity=0.121 Sum_probs=90.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcc-ccccccEE--E-EecCceeEEEEcCCCC--chhH-HHHhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVRGPIT--I-VSGKQRRLQFVECPND--INGM-IDCAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~G~it--i-~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLV 145 (519)
+++.|+|+|++|+|||||+++|++....... ......+. + .......+.|+||||. +..+ ...+..+|++|+|
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 96 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEE
Confidence 4589999999999999999999976311111 11111111 1 1223357999999995 4443 3457899999999
Q ss_pred EeCCCCCcccH-----HHHHHHHHhcCCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 146 IDGSYGFEMET-----FEFLNLMQNHGLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 146 VDas~g~e~et-----~e~L~~L~~~GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
+|++.....+. .+++......++| +++|+||+|+..... ...+..+.++. .+.++|++||+++
T Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~--- 165 (187)
T 2a9k_A 97 FSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQVSVEEAKNRAEQ-------WNVNYVETSAKTR--- 165 (187)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTC---
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCccCHHHHHHHHHH-------cCCeEEEeCCCCC---
Confidence 99985422111 1222222223677 556899999864211 11222222211 2468999999977
Q ss_pred ChhHHHHHHHHHHhh
Q 010060 220 SKREIRNLARFISVM 234 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 166 --~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 166 --ANVDKVFFDLMRE 178 (187)
T ss_dssp --TTHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 5666666655543
No 76
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.51 E-value=1.1e-13 Score=127.88 Aligned_cols=154 Identities=15% Similarity=0.164 Sum_probs=96.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEE--EEecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPIT--IVSGKQRRLQFVECPND--INGM-IDCAKIADLALLLI 146 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~it--i~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVV 146 (519)
..+..|+|+|++|||||||+++|++..... .....| ++ .+......+.++||||. +..+ ...+..||++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 91 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG-FNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI 91 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETT-EEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCC-eEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 456899999999999999999999863211 111112 21 12234678999999996 4443 45678999999999
Q ss_pred eCCCCCcccH--HHHHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 147 DGSYGFEMET--FEFLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 147 Das~g~e~et--~e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|++.....+. ..+..++. ..+.| +++|+||+|+.... ...++.+.+.... ......++|++||++|
T Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~g----- 162 (181)
T 1fzq_A 92 DSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAA-PASEIAEGLNLHT--IRDRVWQIQSCSALTG----- 162 (181)
T ss_dssp ETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCC-CHHHHHHHTTGGG--CCSSCEEEEECCTTTC-----
T ss_pred ECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccCC-CHHHHHHHhCchh--ccCCceEEEEccCCCC-----
Confidence 9986432221 12222332 24667 55689999997532 1222222221000 0113457999999977
Q ss_pred hHHHHHHHHHHhhcC
Q 010060 222 REIRNLARFISVMKF 236 (519)
Q Consensus 222 ~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 163 ~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 163 EGVQDGMNWVCKNVN 177 (181)
T ss_dssp TTHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHH
Confidence 678888887776543
No 77
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.51 E-value=6.9e-14 Score=126.51 Aligned_cols=149 Identities=15% Similarity=0.212 Sum_probs=91.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccc-cE---EE-EecCceeEEEEcCCCC--chh-HHHHhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI---TI-VSGKQRRLQFVECPND--ING-MIDCAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i---ti-~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLV 145 (519)
+..|+|+|++|+|||||+++|++...........+ .+ .+ .......+.|+||||. +.. ....+..+|++|+|
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v 93 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVV 93 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999997531111110011 01 11 1223357999999995 344 34567899999999
Q ss_pred EeCCCCCccc-HHHHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 146 IDGSYGFEME-TFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 146 VDas~g~e~e-t~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|++.+...+ ...++..+.. .++| +++|+||+|+...... ..+....+.. + +.++|++||+++
T Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~-~------~~~~~~~Sa~~~---- 161 (179)
T 2y8e_A 94 YDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVSTEEGERKAKE-L------NVMFIETSAKAG---- 161 (179)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCSCHHHHHHHHHH-H------TCEEEEEBTTTT----
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccCcCCHHHHHHHHHH-c------CCeEEEEeCCCC----
Confidence 9997542211 1123333322 3566 5668999999742211 1122222111 1 468999999976
Q ss_pred hhHHHHHHHHHHhhc
Q 010060 221 KREIRNLARFISVMK 235 (519)
Q Consensus 221 ~~ei~~LlR~I~~~~ 235 (519)
.++..+...|....
T Consensus 162 -~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 162 -YNVKQLFRRVAAAL 175 (179)
T ss_dssp -BSHHHHHHHHHHTC
T ss_pred -CCHHHHHHHHHHHH
Confidence 67788887776654
No 78
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.51 E-value=3.2e-14 Score=131.38 Aligned_cols=155 Identities=10% Similarity=0.037 Sum_probs=95.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEEeC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGM-IDCAKIADLALLLIDG 148 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVVDa 148 (519)
.++..|+|+|++|||||||+++|+.........++.-.+..+......+.++||||. +..+ ...++.+|++|+|+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 457899999999999999999997642111111111112223345778999999994 3332 3356889999999999
Q ss_pred CCCC--cccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 149 SYGF--EMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 149 s~g~--e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
+.+. +.....+..++.. .+.| +++|+||+|+.... ...++.+.+...+ ....+.++|++||+++ .+
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~-----~g 170 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLPDAA-SEAEIAEQLGVSS--IMNRTWTIVKSSSKTG-----DG 170 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTCC-CHHHHHHHTTGGG--CCSSCEEEEECCTTTC-----TT
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCCC-CHHHHHHHhChhh--ccCCceEEEEccCCCc-----cC
Confidence 8653 2222234344332 3566 66799999997532 1223333221111 0112458999999977 56
Q ss_pred HHHHHHHHHhhc
Q 010060 224 IRNLARFISVMK 235 (519)
Q Consensus 224 i~~LlR~I~~~~ 235 (519)
+..+...|....
T Consensus 171 i~~l~~~l~~~i 182 (189)
T 2x77_A 171 LVEGMDWLVERL 182 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776665543
No 79
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.51 E-value=6.4e-14 Score=125.96 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=88.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC-ccccccccEE--EE--ecCceeEEEEcCCCC--chhHH-HHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPIT--IV--SGKQRRLQFVECPND--INGMI-DCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~it--i~--~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLL 144 (519)
.+..|+|+|++|+|||||+++|++..... ......-.+. .+ .+....+.++||||. +..+. ..++.+|++|+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 45799999999999999999999763211 1111111111 11 223457899999995 33322 34678999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|+|++.+...+. ..++..+.. .++| +++|+||+|+...... ..+..+ +... .+.++|++||++|
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~-~~~~------~~~~~~~~Sa~~~--- 153 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHVSIQEAES-YAES------VGAKHYHTSAKQN--- 153 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCCSCHHHHHH-HHHH------TTCEEEEEBTTTT---
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccccCHHHHHH-HHHH------cCCeEEEecCCCC---
Confidence 999976432221 123333332 4566 5568999999742111 112222 2111 2468999999977
Q ss_pred ChhHHHHHHHHHHhh
Q 010060 220 SKREIRNLARFISVM 234 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 154 --~gi~~l~~~l~~~ 166 (170)
T 1z08_A 154 --KGIEELFLDLCKR 166 (170)
T ss_dssp --BSHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 5677777666554
No 80
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=123.83 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=85.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccc-c---EEEE-ecCceeEEEEcCCCCch----hHH-HHhhccCEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-P---ITIV-SGKQRRLQFVECPNDIN----GMI-DCAKIADLA 142 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~---iti~-~~~~~rl~fIDtPGdl~----sml-d~ak~ADlV 142 (519)
++..|+|+|++|||||||+++|++......... .| . .++. .+....+.++||||.-. .+. ..+..+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ-LGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCC-SSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCc-cccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 457999999999999999999998642211111 11 1 1111 22345789999999522 233 345789999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHh----cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 143 LLLIDGSYGFEMET-FEFLNLMQN----HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 143 LLVVDas~g~e~et-~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
|+|+|++.....+. ..++..+.. .++| +++|+||+|+...... ..+.. .+...+ +.++|++||++|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~-~~~~~~------~~~~~~~Sa~~g 153 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLARCREVSVEEGR-ACAVVF------DCKFIETSATLQ 153 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTTTCCSCHHHHH-HHHHHH------TSEEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhccccccCHHHHH-HHHHHc------CCeEEEEecCCC
Confidence 99999975332211 133333433 2677 5568999999753211 11111 121111 468999999977
Q ss_pred CcCChhHHHHHHHHHHhh
Q 010060 217 GKYSKREIRNLARFISVM 234 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 154 -----~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 154 -----HNVAELFEGVVRQ 166 (175)
T ss_dssp -----BSHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHH
Confidence 5666666655543
No 81
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.51 E-value=8.3e-14 Score=124.98 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=80.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccE----EEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPI----TIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLI 146 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~i----ti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVV 146 (519)
...|+|+|.+|||||||+++|++........ ..|.. .........+.++||||. +..+. ..+..+|++|+|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAE-AAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCC-ccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 4689999999999999999998753221111 11111 112334567899999995 33333 3568899999999
Q ss_pred eCCCCCcccH-HHHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 147 DGSYGFEMET-FEFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 147 Das~g~e~et-~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|++.....+. ..++..+.. .++| +++|+||+|+........+....+... .+.++|++||++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~----- 148 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSREVSVDEGRACAVV------FDCKFIETSAALH----- 148 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCCSCHHHHHHHHHH------TTCEEEECBGGGT-----
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccccCHHHHHHHHHH------hCCcEEEeccCCC-----
Confidence 9985422111 123333322 3677 556899999975322111222222221 2468999999987
Q ss_pred hHHHHHHHHHHh
Q 010060 222 REIRNLARFISV 233 (519)
Q Consensus 222 ~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 149 ~gi~~l~~~l~~ 160 (166)
T 3q72_A 149 HNVQALFEGVVR 160 (166)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 566666665544
No 82
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.51 E-value=5.9e-14 Score=125.67 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=90.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE---EEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI---TIV-SGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
....|+|+|++|+|||||+++|++...... .....-.+ .+. ......+.++||||. +.. ....+..+|++|+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 457899999999999999999998632111 11110011 111 223468999999995 333 4456789999999
Q ss_pred EEeCCCCCccc-HHHHHHHHHh--cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 145 LIDGSYGFEME-TFEFLNLMQN--HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 145 VVDas~g~e~e-t~e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
|+|++.+...+ ...++..+.. .+.| +++|+||+|+...... ..+.. .+...+ +.++|++||+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~-~~~~~~------~~~~~~~Sa~~~---- 151 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSCIKNEEAE-GLAKRL------KLRFYRTSVKED---- 151 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCSSCHHHHH-HHHHHH------TCEEEECBTTTT----
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCcccccCHHHHH-HHHHHc------CCeEEEEecCCC----
Confidence 99998643211 1223333332 3677 5568999999742111 12222 222212 458999999977
Q ss_pred hhHHHHHHHHHHhh
Q 010060 221 KREIRNLARFISVM 234 (519)
Q Consensus 221 ~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 152 -~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 152 -LNVSEVFKYLAEK 164 (168)
T ss_dssp -BSSHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 4566666655543
No 83
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.51 E-value=1.6e-13 Score=121.82 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=89.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE--E-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT--I-VSGKQRRLQFVECPND--INGMI-DCAKIADLALLLI 146 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVV 146 (519)
+..|+|+|++|+|||||+++|++...... .......+. + .......+.++||||. +..+. ..+..+|++++|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 36899999999999999999997631111 111111111 1 1223456899999995 34444 4678899999999
Q ss_pred eCCCCCcccH-HHHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 147 DGSYGFEMET-FEFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 147 Das~g~e~et-~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|++.....+. ..++..+.. .++| +++|+||+|+......... ...+.+.+ +.++|++||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~-~~~~~~~~------~~~~~~~Sa~~~----- 149 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAARTVESRQ-AQDLARSY------GIPYIETSAKTR----- 149 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSCHHH-HHHHHHHH------TCCEEEECTTTC-----
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcccCHHH-HHHHHHHc------CCeEEEecCCCC-----
Confidence 9975432111 223333322 3677 5568999998752211112 22222222 358999999977
Q ss_pred hHHHHHHHHHHhh
Q 010060 222 REIRNLARFISVM 234 (519)
Q Consensus 222 ~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 150 ~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 150 QGVEDAFYTLVRE 162 (166)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5677777666543
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.51 E-value=6.7e-14 Score=131.58 Aligned_cols=155 Identities=12% Similarity=0.070 Sum_probs=91.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMI-DCAKIADLALLLIDG 148 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDa 148 (519)
..+..|+++|++|||||||+++|++........++......+...+..+.++||||. +..+. ..+..||++|+|+|+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~ 102 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDC 102 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEET
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEEC
Confidence 445789999999999999999998753111111111111122334578999999995 33333 457899999999999
Q ss_pred CCCCccc--HHHHHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhh----------hhhccCCceEEEEec
Q 010060 149 SYGFEME--TFEFLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRF----------WTEIYDGAKLFYLSG 213 (519)
Q Consensus 149 s~g~e~e--t~e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f----------~~e~~~~~kVf~lSA 213 (519)
+.+-.-+ ...+..++. ..++| +++|+||+|+... ....++.+.+.... ........++|++||
T Consensus 103 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 103 ADHERLLESKEELDSLMTDETIANVP-ILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCcccc-CCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 8642211 122333332 24677 5568999999742 11223332222110 000123568999999
Q ss_pred ccCCcCChhHHHHHHHHHHh
Q 010060 214 LIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~ 233 (519)
++| .++..+...|..
T Consensus 181 ~~g-----~gv~~l~~~l~~ 195 (198)
T 1f6b_A 181 LKR-----QGYGEGFRWMAQ 195 (198)
T ss_dssp TTT-----BSHHHHHHHHHT
T ss_pred CCC-----CCHHHHHHHHHH
Confidence 977 577777777654
No 85
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.51 E-value=7.3e-14 Score=127.20 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=89.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE---EEecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT---IVSGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it---i~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
..+..|+|+|++|+|||||+++|+...-... ..++...+. ...+....+.++||||. +.. ....++.+|++|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4568999999999999999999997531111 010000000 01223456779999995 444 3345788999999
Q ss_pred EEeCCCCCcccHH--HHHHHHHh--cCCCeEEEEEEccCCCCCHHH----------HHHHHHHHHHhhhhhccCCceEEE
Q 010060 145 LIDGSYGFEMETF--EFLNLMQN--HGLPRVMGVLTHLDKFKDVKK----------LRKTKQRLKHRFWTEIYDGAKLFY 210 (519)
Q Consensus 145 VVDas~g~e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~----------l~~~kk~Lk~~f~~e~~~~~kVf~ 210 (519)
|+|++.+...+.. .++..+.. .++| +++|+||+|+...... ..+....+... ....++|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~ 159 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL-----IGAPAYIE 159 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH-----HTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH-----cCCCEEEE
Confidence 9999754322222 24444543 2677 5568999999754321 01111122221 23358999
Q ss_pred EecccCCcCChhHHHHHHHHHHhhcC
Q 010060 211 LSGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 211 lSAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
+||++| .++..+...|.....
T Consensus 160 ~Sa~~~-----~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 160 CSSKSQ-----ENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCTTTC-----TTHHHHHHHHHHHHS
T ss_pred EECCCC-----CCHHHHHHHHHHHHh
Confidence 999977 678888877766544
No 86
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.51 E-value=3.7e-14 Score=141.44 Aligned_cols=146 Identities=21% Similarity=0.265 Sum_probs=96.2
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCcccccccc-----EEEEecCceeEEEEcCCCC--ch------h----HHH--
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP-----ITIVSGKQRRLQFVECPND--IN------G----MID-- 134 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~-----iti~~~~~~rl~fIDtPGd--l~------s----mld-- 134 (519)
.+.|+|+|.+|||||||+|+|++... .+....|. ...+......+.||||||. +. . +..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~--~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE--EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 47899999999999999999998741 11111110 1123345678999999994 22 1 111
Q ss_pred -HhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 135 -CAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 135 -~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
....+|++|+|+|++. . .....++..+...++|.+ +|+||+|+.... .+....+.+.+.+ +.+++++||
T Consensus 81 ~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~~~p~i-vv~NK~Dl~~~~-~~~~~~~~l~~~l------g~~~i~~SA 150 (274)
T 3i8s_A 81 ILSGDADLLINVVDASN-L-ERNLYLTLQLLELGIPCI-VALNMLDIAEKQ-NIRIEIDALSARL------GCPVIPLVS 150 (274)
T ss_dssp HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHHTCCEE-EEEECHHHHHHT-TEEECHHHHHHHH------TSCEEECCC
T ss_pred HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhcCCCEE-EEEECccchhhh-hHHHHHHHHHHhc------CCCEEEEEc
Confidence 1368999999999985 2 233455666667799954 589999986321 1111122333333 478999999
Q ss_pred ccCCcCChhHHHHHHHHHHhhcC
Q 010060 214 LIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
++| .++..|...|.....
T Consensus 151 ~~g-----~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 151 TRG-----RGIEALKLAIDRYKA 168 (274)
T ss_dssp GGG-----HHHHHHHHHHHTCCC
T ss_pred CCC-----CCHHHHHHHHHHHHh
Confidence 976 788888888876554
No 87
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.50 E-value=2.3e-13 Score=128.18 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=68.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecC---ceeEEEEcCCCC--chh-HHH-HhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGK---QRRLQFVECPND--ING-MID-CAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~---~~rl~fIDtPGd--l~s-mld-~ak~ADlVLL 144 (519)
...+.|+|+|++|||||||+++|++..-..........+..+... ...+.+|||||. +.. ++. .+..+|++||
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 345799999999999999999999863111111111111122222 568999999996 444 444 4789999999
Q ss_pred EEeCCCCCcccHHHHH----HHHH-----hcCCCeEEEEEEccCCCCC
Q 010060 145 LIDGSYGFEMETFEFL----NLMQ-----NHGLPRVMGVLTHLDKFKD 183 (519)
Q Consensus 145 VVDas~g~e~et~e~L----~~L~-----~~GiP~VI~VlNKlDl~~~ 183 (519)
|+|++. ++....+++ ..+. ..++| +++|+||+|+...
T Consensus 85 v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 130 (214)
T 2fh5_B 85 VVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAMA 130 (214)
T ss_dssp EEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTTC
T ss_pred EEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCCc
Confidence 999975 222222222 2222 12455 6679999999753
No 88
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.50 E-value=1.8e-13 Score=127.35 Aligned_cols=150 Identities=11% Similarity=0.129 Sum_probs=89.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc-cE--EE-EecCceeEEEEcCCCC--chhH-HHHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI--TI-VSGKQRRLQFVECPND--INGM-IDCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i--ti-~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLL 144 (519)
.+.+.|+|+|++|+|||||+++|++..-........+ .+ .+ ..+....+.||||||. +..+ ...+..+|++|+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 4458999999999999999999997631111111111 11 11 1222357999999995 4443 345788999999
Q ss_pred EEeCCCCCcccH-HHHHHHHH----hcCCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 145 LIDGSYGFEMET-FEFLNLMQ----NHGLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~----~~GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
|+|++.....+. ..++..+. ..++| +++|+||+|+..... ...+..+.+.. + +.++|++||++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~-~------~~~~~~~Sa~~g-- 161 (206)
T 2bov_A 92 VFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQVSVEEAKNRAEQ-W------NVNYVETSAKTR-- 161 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGGGCCSCHHHHHHHHHH-H------TCEEEEECTTTC--
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccccccccHHHHHHHHHH-h------CCeEEEEeCCCC--
Confidence 999985322111 12222222 23677 556899999974211 12222222211 1 357999999977
Q ss_pred CChhHHHHHHHHHHhh
Q 010060 219 YSKREIRNLARFISVM 234 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 162 ---~gi~~l~~~l~~~ 174 (206)
T 2bov_A 162 ---ANVDKVFFDLMRE 174 (206)
T ss_dssp ---TTHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHH
Confidence 4566666555443
No 89
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.50 E-value=1.4e-13 Score=128.55 Aligned_cols=135 Identities=17% Similarity=0.160 Sum_probs=83.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCc-cccccc-cE---EEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRG-PI---TIV-SGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G-~i---ti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
.+.|+|+|++|||||||+++|++...... ...+ | .+ ++. ......+.||||||. +.. ....+..||++||
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV-GIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC-SEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc-ceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 47899999999999999999998642111 1111 1 11 111 223568999999995 334 3345788999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
|+|++.+...+. ..++..+.. .+.| +++|+||+|+........+....+...+ +.++|++||++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~ 155 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERVVSSERGRQLADHL------GFEFFEASAKDN 155 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCCSCHHHHHHHHHHH------TCEEEECBTTTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCcccccCHHHHHHHHHHC------CCeEEEEECCCC
Confidence 999986432221 234444443 3555 6679999999753211111122222222 358999999987
No 90
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.50 E-value=3.1e-13 Score=143.39 Aligned_cols=152 Identities=18% Similarity=0.298 Sum_probs=102.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCcccccccc----E-EEEecCceeEEEEcCCCCc---------------hh
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP----I-TIVSGKQRRLQFVECPNDI---------------NG 131 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~----i-ti~~~~~~rl~fIDtPGdl---------------~s 131 (519)
..++.|+|+|+||||||||+|+|++.... .+....|. + ..+...+..+.++||||.- ..
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~-~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCccc-ccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 35689999999999999999999986310 11111110 0 0122345679999999841 01
Q ss_pred HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEE
Q 010060 132 MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFY 210 (519)
Q Consensus 132 mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~ 210 (519)
.+..+..||++++|+|++.+...+...++..+...|.|. |+|+||+|+..... ...+..+.+...+ ....+.++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~-ilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 333 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRAS-VVVFNKWDLVVHREKRYDEFTKLFREKL--YFIDYSPLIF 333 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEE-EEEEECGGGSTTGGGCHHHHHHHHHHHC--GGGTTSCEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECccCCCchhhHHHHHHHHHHHHh--ccCCCCcEEE
Confidence 355678899999999999888777777777777788884 56899999985332 2344444444433 2235678999
Q ss_pred EecccCCcCChhHHHHHHHHHH
Q 010060 211 LSGLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 211 lSAl~g~~Y~~~ei~~LlR~I~ 232 (519)
+||++| ..+..|+..+.
T Consensus 334 ~SA~~g-----~gv~~l~~~i~ 350 (439)
T 1mky_A 334 TSADKG-----WNIDRMIDAMN 350 (439)
T ss_dssp CBTTTT-----BSHHHHHHHHH
T ss_pred EECCCC-----CCHHHHHHHHH
Confidence 999987 45555554443
No 91
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.50 E-value=1.2e-13 Score=128.06 Aligned_cols=151 Identities=15% Similarity=0.082 Sum_probs=90.8
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE---EEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEE
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI---TIV-SGKQRRLQFVECPND--ING-MIDCAKIADLA 142 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlV 142 (519)
..+...|+|+|.+|||||||+++|++...... ...+.-.+ .+. ......+.|+||||. +.. ....++.||++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 34568999999999999999999998632111 01110011 111 223468999999995 333 45567899999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 143 LLLIDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 143 LLVVDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
|||+|++.....+. ..++..+.. .++| +++|+||+|+...... ..+.. .+...+ +.++|.+||+++
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~-~~~~~~------~~~~~~~Sa~~~- 168 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDVKREEGE-AFAREH------GLIFMETSAKTA- 168 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCHHHHH-HHHHHH------TCEEEEECTTTC-
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCccccCHHHHH-HHHHHc------CCEEEEEeCCCC-
Confidence 99999985432221 234444443 2555 5668999999642111 11221 121111 458999999977
Q ss_pred cCChhHHHHHHHHHHhh
Q 010060 218 KYSKREIRNLARFISVM 234 (519)
Q Consensus 218 ~Y~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 169 ----~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 169 ----CNVEEAFINTAKE 181 (191)
T ss_dssp ----TTHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHH
Confidence 5666666555443
No 92
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=2.4e-13 Score=125.75 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=93.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCcc-ccccccEE-E--EecCceeEEEEcCCCC--chhH-HHHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVRGPIT-I--VSGKQRRLQFVECPND--INGM-IDCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~G~it-i--~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLL 144 (519)
.....|+|+|.+|||||||+++|++....... ......+. . .......+.|+||||. +..+ ...+..+|++|+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 45689999999999999999999986322111 11111111 1 1223457999999994 4443 345688999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 145 LIDGSYGFEMET-FEFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
|+|++.....+. ..++..+.. .++| +++|+||+|+........... .+...+ +.++|++||++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~-~~~~~~------~~~~~~~Sa~~~-- 155 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQREVDTREAQ-AVAQEW------KCAFMETSAKMN-- 155 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCSSCHHHHH-HHHHHH------TCEEEECBTTTT--
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccccCHHHHH-HHHHHh------CCeEEEEecCCC--
Confidence 999975322111 122332222 3667 556899999975221111221 121111 358999999976
Q ss_pred CChhHHHHHHHHHHhhcC
Q 010060 219 YSKREIRNLARFISVMKF 236 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 156 ---~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 156 ---YNVKELFQELLTLET 170 (199)
T ss_dssp ---BSHHHHHHHHHHHCS
T ss_pred ---CCHHHHHHHHHHHHh
Confidence 678888887776544
No 93
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.49 E-value=5.2e-14 Score=131.10 Aligned_cols=150 Identities=16% Similarity=0.199 Sum_probs=89.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccc-cE---EEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI---TIV-SGKQRRLQFVECPND--ING-MIDCAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i---ti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLV 145 (519)
.+.|+|+|.+|+|||||+++|++...........| .+ ++. .+....+.||||||. +.. ....+..+|++|||
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV 105 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 105 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47899999999999999999997632111110011 01 111 123457999999995 344 44567899999999
Q ss_pred EeCCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 146 IDGSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 146 VDas~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
+|++.+...+.. .++..+.. .++| +++|+||+|+........+....+.. ...+.++|.+||++|
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g----- 174 (192)
T 2il1_A 106 YDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREITRQQGEKFAQ-----QITGMRFCEASAKDN----- 174 (192)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCHHHHHHHHH-----TSTTCEEEECBTTTT-----
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccCHHHHHHHHH-----hcCCCeEEEEeCCCC-----
Confidence 999864332222 33344433 3555 66799999996422111111122211 124678999999977
Q ss_pred hHHHHHHHHHHhh
Q 010060 222 REIRNLARFISVM 234 (519)
Q Consensus 222 ~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 175 ~gi~~l~~~l~~~ 187 (192)
T 2il1_A 175 FNVDEIFLKLVDD 187 (192)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5666676666543
No 94
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.49 E-value=1.5e-13 Score=126.23 Aligned_cols=150 Identities=12% Similarity=0.089 Sum_probs=92.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCcccc---------ccccEEE-------EecCceeEEEEcCCCC--chhHH
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE---------VRGPITI-------VSGKQRRLQFVECPND--INGMI 133 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~---------~~G~iti-------~~~~~~rl~fIDtPGd--l~sml 133 (519)
...+.|+|+|.+|||||||++.|.+.+....... +.-+++. .......+.++||||. +..+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR 91 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHH
Confidence 3458999999999999999998887643221100 0000111 1123457999999994 55544
Q ss_pred -HHhhccCEEEEEEeCCCCCcccHH----HHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc
Q 010060 134 -DCAKIADLALLLIDGSYGFEMETF----EFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY 203 (519)
Q Consensus 134 -d~ak~ADlVLLVVDas~g~e~et~----e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~ 203 (519)
..+..||++|||+|++.+...+.. .+..++.. .++| +++|+||+|+.... ...+..+.+. ..
T Consensus 92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~~~~~~~------~~ 163 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLPDAL-PVEMVRAVVD------PE 163 (198)
T ss_dssp HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTSTTCC-CHHHHHHHHC------TT
T ss_pred HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhccccc-CHHHHHHHHH------hc
Confidence 467899999999999855433333 23333332 3666 55689999997531 1222222221 12
Q ss_pred CCceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 204 DGAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 204 ~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
...++|++||++| .++..+...|...
T Consensus 164 ~~~~~~~~Sa~~~-----~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 164 GKFPVLEAVATEG-----KGVFETLKEVSRL 189 (198)
T ss_dssp CCSCEEECBGGGT-----BTHHHHHHHHHHH
T ss_pred CCceEEEEecCCC-----cCHHHHHHHHHHH
Confidence 2238999999977 5666666555543
No 95
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.49 E-value=2.1e-13 Score=126.24 Aligned_cols=150 Identities=17% Similarity=0.123 Sum_probs=91.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc-cE---EE-EecCceeEEEEcCCCC--chh-HHHHhhccCEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI---TI-VSGKQRRLQFVECPND--ING-MIDCAKIADLAL 143 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i---ti-~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVL 143 (519)
..++.|+|+|++|||||||+++|++...........| .+ ++ +......+.|+||||. +.. ....+..+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 3458999999999999999999998632111110111 01 11 1234568899999995 333 445678999999
Q ss_pred EEEeCCCCCccc-HHHHHHHHHhc---CCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 144 LLIDGSYGFEME-TFEFLNLMQNH---GLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 144 LVVDas~g~e~e-t~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
||+|++.+...+ ...++..+... ++| +++|+||+|+...... ........ .. .+.++|++||+++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~-~~------~~~~~~~~Sa~~~-- 172 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKSDLSQAREVPTEEARMFA-EN------NGLLFLETSALDS-- 172 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGGCCSCHHHHHHHH-HH------TTCEEEEECTTTC--
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECCCcccccccCHHHHHHHH-HH------cCCEEEEEeCCCC--
Confidence 999998643321 12344444432 455 6678999999742111 11222111 11 2468999999977
Q ss_pred CChhHHHHHHHHHHhh
Q 010060 219 YSKREIRNLARFISVM 234 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 173 ---~gi~~l~~~l~~~ 185 (193)
T 2oil_A 173 ---TNVELAFETVLKE 185 (193)
T ss_dssp ---TTHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHH
Confidence 5666666555443
No 96
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=125.38 Aligned_cols=150 Identities=13% Similarity=0.154 Sum_probs=88.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE--EEEe--cCceeEEEEcCCCC--chh-HHHHhhccCEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI--TIVS--GKQRRLQFVECPND--ING-MIDCAKIADLAL 143 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i--ti~~--~~~~rl~fIDtPGd--l~s-mld~ak~ADlVL 143 (519)
.+.+.|+|+|++|+|||||+++|++...... .....-.+ ..+. +....+.|+||||. +.. ....+..+|++|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 3458999999999999999999998632111 11110001 1111 22367999999994 333 344578899999
Q ss_pred EEEeCCCCCcccHH-HHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 144 LLIDGSYGFEMETF-EFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 144 LVVDas~g~e~et~-e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|+|++.+...+.. .++..+... +.| +|+|+||+|+.............+...+ +.++|++||++|
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~---- 155 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDDPERKVVETEDAYKFAGQM------GIQLFETSAKEN---- 155 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCTTSE-EEEEEECTTCGGGCCSCHHHHHHHHHHH------TCCEEECBTTTT----
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCCCchhcccCHHHHHHHHHHc------CCeEEEEECCCC----
Confidence 99999864322221 234433332 355 5678999998642211111111121111 468999999977
Q ss_pred hhHHHHHHHHHHh
Q 010060 221 KREIRNLARFISV 233 (519)
Q Consensus 221 ~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 156 -~gi~~l~~~l~~ 167 (181)
T 3tw8_B 156 -VNVEEMFNCITE 167 (181)
T ss_dssp -BSHHHHHHHHHH
T ss_pred -CCHHHHHHHHHH
Confidence 456666655544
No 97
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.49 E-value=1.3e-13 Score=129.15 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=91.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccc-cccccEE-EE--ecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVP-EVRGPIT-IV--SGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~-~~~G~it-i~--~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
...+.|+|+|.+|||||||+++|++........ .....+. .. ......+.||||||. +.. ....+..+|++|+
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 346899999999999999999999864221111 1111111 11 234577899999995 333 3456788999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|+|++.....+. ..++..+.. .++| +++|+||+|+.............+...+ +.++|.+||++|
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~Sa~~~--- 171 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPEREVQAVEGKKLAESW------GATFMESSAREN--- 171 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEEEECCTTCH---
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccccccCHHHHHHHHHHh------CCeEEEEeCCCC---
Confidence 999985322111 123333332 3667 5568999998742211111112222222 468999999966
Q ss_pred ChhHHHHHHHHHHhhcC
Q 010060 220 SKREIRNLARFISVMKF 236 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 172 --~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 172 --QLTQGIFTKVIQEIA 186 (201)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHH
Confidence 678877766665443
No 98
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=1.3e-13 Score=129.08 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=87.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc-CccccccccEE--EEe--cCceeEEEEcCCCC--chh-HHHHhhccCEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPEVRGPIT--IVS--GKQRRLQFVECPND--ING-MIDCAKIADLAL 143 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~~~G~it--i~~--~~~~rl~fIDtPGd--l~s-mld~ak~ADlVL 143 (519)
...+.|+|+|++|||||||+++|++.... .....+.-.+. .+. +....+.||||||. +.. ....+..+|++|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 44689999999999999999999975311 11111111111 111 22367999999995 333 455678999999
Q ss_pred EEEeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 144 LLIDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 144 LVVDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
||+|++.+...+. ..++..+.. .++| +++|+||+|+.......... ..+...+ +.++|++||+++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~-~~~~~~~------~~~~~~~Sa~~~--- 166 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTADQG-EALAKEL------GIPFIESSAKND--- 166 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCCSCHHHH-HHHHHHH------TCCEEECBTTTT---
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccCHHHH-HHHHHHc------CCEEEEEeCCCC---
Confidence 9999985432211 234443333 2555 56799999995321111111 2222222 357999999977
Q ss_pred ChhHHHHHHHHHH
Q 010060 220 SKREIRNLARFIS 232 (519)
Q Consensus 220 ~~~ei~~LlR~I~ 232 (519)
.++..+...|.
T Consensus 167 --~gi~~l~~~l~ 177 (213)
T 3cph_A 167 --DNVNEIFFTLA 177 (213)
T ss_dssp --BSSHHHHHHHH
T ss_pred --CCHHHHHHHHH
Confidence 34444444443
No 99
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.49 E-value=4e-14 Score=140.18 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=94.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCcccccccc-----EEEEecCceeEEEEcCCCC--chh----------HH-HHh
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP-----ITIVSGKQRRLQFVECPND--ING----------MI-DCA 136 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~-----iti~~~~~~rl~fIDtPGd--l~s----------ml-d~a 136 (519)
+.|+|+|.||||||||+|+|++.... +....|. ...+...+..+.||||||. +.. +. ..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~--v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR--VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE--EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC--ccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 47999999999999999999987311 1111110 1122334568999999994 221 11 223
Q ss_pred --hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecc
Q 010060 137 --KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGL 214 (519)
Q Consensus 137 --k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl 214 (519)
..+|++|+|+|++. ......++..+...++|.+ +|+||+|+.... ......+.+.+.+ +.++|++||+
T Consensus 80 ~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvi-lv~NK~Dl~~~~-~~~~~~~~l~~~l------g~~vi~~SA~ 149 (256)
T 3iby_A 80 IDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVV-VALNMMDIAEHR-GISIDTEKLESLL------GCSVIPIQAH 149 (256)
T ss_dssp HHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEE-EEEECHHHHHHT-TCEECHHHHHHHH------CSCEEECBGG
T ss_pred hhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEE-EEEEChhcCCcC-CcHHHHHHHHHHc------CCCEEEEECC
Confidence 78999999999986 2233456666777889854 589999986321 1111122343333 5799999999
Q ss_pred cCCcCChhHHHHHHHHHHhh
Q 010060 215 IHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 215 ~g~~Y~~~ei~~LlR~I~~~ 234 (519)
+| .++..|...|...
T Consensus 150 ~g-----~gi~el~~~i~~~ 164 (256)
T 3iby_A 150 KN-----IGIPALQQSLLHC 164 (256)
T ss_dssp GT-----BSHHHHHHHHHTC
T ss_pred CC-----CCHHHHHHHHHhh
Confidence 77 6788888887665
No 100
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.49 E-value=1.9e-13 Score=128.95 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=94.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcccc-CccccccccEE--E-EecCceeEEEEcCCCC--chhH-HHHhhccCEEE
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPEVRGPIT--I-VSGKQRRLQFVECPND--INGM-IDCAKIADLAL 143 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVL 143 (519)
..+++.|+|+|.+|||||||+++|+...-. .........+. + .......+.|+||||. +..+ ...+..+|++|
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 456789999999999999999999975211 11111111111 1 1233456779999995 3333 34678999999
Q ss_pred EEEeCCCCCcccHH--HHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHHH---------HHHHhhhhhccCCceEEE
Q 010060 144 LLIDGSYGFEMETF--EFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTKQ---------RLKHRFWTEIYDGAKLFY 210 (519)
Q Consensus 144 LVVDas~g~e~et~--e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~kk---------~Lk~~f~~e~~~~~kVf~ 210 (519)
+|+|++.+...+.. .++..+... ++| +++|+||+|+...........+ .... +.......++|+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~ 183 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA--MAKEIGAVKYLE 183 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH--HHHHTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhccchhhhhhhhccccccccHHHHHH--HHHhcCCcEEEE
Confidence 99999864333222 345555544 677 5568999999864432211111 1111 112234567999
Q ss_pred EecccCCcCChhHHHHHHHHHHhh
Q 010060 211 LSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 211 lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
+||++| .++..+...|...
T Consensus 184 ~SA~~g-----~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 184 CSALTQ-----RGLKTVFDEAIRA 202 (204)
T ss_dssp CCTTTC-----TTHHHHHHHHHHT
T ss_pred eeCCCC-----CCHHHHHHHHHHH
Confidence 999977 5777777776543
No 101
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.49 E-value=2.4e-13 Score=124.94 Aligned_cols=142 Identities=19% Similarity=0.228 Sum_probs=92.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcccccc----ccE-EEEecCceeEEEEcCCCCc------h-----hHHHHh
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVR----GPI-TIVSGKQRRLQFVECPNDI------N-----GMIDCA 136 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~----G~i-ti~~~~~~rl~fIDtPGdl------~-----smld~a 136 (519)
+...|+|+|++|||||||+|+|++.... .+.... ..+ ..+...+..+.++||||.. . .++..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAA-IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-eeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 4578999999999999999999986311 011111 111 1122345679999999942 1 134567
Q ss_pred hccCEEEEEEeCCCCCcccHHHHHHHHHhc---CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 137 KIADLALLLIDGSYGFEMETFEFLNLMQNH---GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
..||++|+|+|++.....+...++..+... ++| +|+|+||+|+..... .+ .. ..+.++|++||
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~-----------~~-~~-~~~~~~~~~SA 147 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP-ITVVRNKADITGETL-----------GM-SE-VNGHALIRLSA 147 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCC-EEEEEECHHHHCCCC-----------EE-EE-ETTEEEEECCT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCC-EEEEEECccCCcchh-----------hh-hh-ccCCceEEEeC
Confidence 899999999999876554444555544432 567 556899999853210 00 01 13568999999
Q ss_pred ccCCcCChhHHHHHHHHHHhh
Q 010060 214 LIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~~ 234 (519)
++| .++..+...|...
T Consensus 148 ~~g-----~gv~~l~~~l~~~ 163 (172)
T 2gj8_A 148 RTG-----EGVDVLRNHLKQS 163 (172)
T ss_dssp TTC-----TTHHHHHHHHHHH
T ss_pred CCC-----CCHHHHHHHHHHH
Confidence 977 6777777776654
No 102
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=7.5e-14 Score=127.49 Aligned_cols=154 Identities=11% Similarity=0.054 Sum_probs=92.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEEeC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALLLIDG 148 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDa 148 (519)
..+..|+|+|++|||||||+++|++........++.-.+..+......+.++||||. +.. ....+..+|++|+|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDS 95 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 456899999999999999999999643211111111111222334688999999995 333 34567899999999999
Q ss_pred CCCCcccH-HH-HHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhH
Q 010060 149 SYGFEMET-FE-FLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKRE 223 (519)
Q Consensus 149 s~g~e~et-~e-~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~e 223 (519)
+.+...+. .+ +..++. ..+.| +++|+||+|+.... ...++.+.+.... ....+.++|++||++| .+
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~i~~~~~~~~--~~~~~~~~~~~Sa~~~-----~g 166 (183)
T 1moz_A 96 TDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGAL-SASEVSKELNLVE--LKDRSWSIVASSAIKG-----EG 166 (183)
T ss_dssp TCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTCC-CHHHHHHHTTTTT--CCSSCEEEEEEBGGGT-----BT
T ss_pred CCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCCC-CHHHHHHHhCccc--ccCCceEEEEccCCCC-----cC
Confidence 76532221 12 333332 24556 66799999997531 1223322221100 0113457999999977 56
Q ss_pred HHHHHHHHHhh
Q 010060 224 IRNLARFISVM 234 (519)
Q Consensus 224 i~~LlR~I~~~ 234 (519)
+..+...|...
T Consensus 167 i~~l~~~l~~~ 177 (183)
T 1moz_A 167 ITEGLDWLIDV 177 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666543
No 103
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.49 E-value=1.5e-13 Score=128.22 Aligned_cols=155 Identities=12% Similarity=0.060 Sum_probs=91.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhH-HHHhhccCEEEEEEeC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGM-IDCAKIADLALLLIDG 148 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLVVDa 148 (519)
.++..|+|+|++|||||||+++|++........++......+...+..+.++||||. +..+ ...+..||++|+|+|+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 100 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA 100 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEEC
Confidence 445799999999999999999999853211111111111122334578999999996 3332 3456899999999999
Q ss_pred CCCCcccH-HH-HHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhh-----hccCCceEEEEecccCCc
Q 010060 149 SYGFEMET-FE-FLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWT-----EIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 149 s~g~e~et-~e-~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~-----e~~~~~kVf~lSAl~g~~ 218 (519)
+.+..-+. .. +..++. ..+.| +++|+||+|+.... ...++.+.+...... ......++|++||++|
T Consensus 101 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g-- 176 (190)
T 1m2o_B 101 ADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNAV-SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR-- 176 (190)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCC-CHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTT--
T ss_pred CChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCCC-CHHHHHHHhCCccccccccccccceEEEEEeECCcC--
Confidence 86532221 12 222322 24667 56699999997521 122222222110000 0123568999999977
Q ss_pred CChhHHHHHHHHHHh
Q 010060 219 YSKREIRNLARFISV 233 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~ 233 (519)
.++.++...|..
T Consensus 177 ---~gi~~l~~~l~~ 188 (190)
T 1m2o_B 177 ---NGYLEAFQWLSQ 188 (190)
T ss_dssp ---BSHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHh
Confidence 677777776654
No 104
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=1e-13 Score=128.55 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=92.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE---EE-EecCceeEEEEcCCCC--chh-HHHHhhccCEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI---TI-VSGKQRRLQFVECPND--ING-MIDCAKIADLAL 143 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i---ti-~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVL 143 (519)
...+.|+|+|.+|||||||+++|++...... ...+.-.+ ++ .......+.||||||. +.. ....+..+|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 3458999999999999999999998642111 11111111 11 1335678999999994 444 345678999999
Q ss_pred EEEeCCCCCccc-HHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 144 LLIDGSYGFEME-TFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 144 LVVDas~g~e~e-t~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
||+|++.....+ ...++..+.. .++| +++|+||+|+........+..+.+...+ +.++|.+||++|
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~--- 170 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEERVVPTEKGQLLAEQL------GFDFFEASAKEN--- 170 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEEEECBTTTT---
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCHHHHHHHHHHc------CCeEEEEECCCC---
Confidence 999997532211 1234555544 3556 5668999998642111111122222222 458999999977
Q ss_pred ChhHHHHHHHHHHhh
Q 010060 220 SKREIRNLARFISVM 234 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~ 234 (519)
.++.++...|...
T Consensus 171 --~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 171 --ISVRQAFERLVDA 183 (191)
T ss_dssp --BSHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 4566666555443
No 105
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.48 E-value=1.4e-13 Score=136.41 Aligned_cols=146 Identities=19% Similarity=0.258 Sum_probs=92.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcccccccc-----EEEEecCceeEEEEcCCCC--chh------H-HHHh--
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP-----ITIVSGKQRRLQFVECPND--ING------M-IDCA-- 136 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~-----iti~~~~~~rl~fIDtPGd--l~s------m-ld~a-- 136 (519)
..+.|+|+|.+|||||||+|+|++.... +....|. ...+......+.||||||. +.. + ...+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~--~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY--VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 3478999999999999999999985311 1111110 0112334678999999995 221 1 1222
Q ss_pred hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 137 KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
..+|++|+|+|++.. + ....++..+...++|. |+|+||+|+.... ......+.+.+.+ +.++|++||++|
T Consensus 82 ~~~d~ii~V~D~t~~-~-~~~~~~~~l~~~~~pv-ilv~NK~Dl~~~~-~i~~~~~~l~~~l------g~~vi~~SA~~g 151 (258)
T 3a1s_A 82 GDADLVILVADSVNP-E-QSLYLLLEILEMEKKV-ILAMTAIDEAKKT-GMKIDRYELQKHL------GIPVVFTSSVTG 151 (258)
T ss_dssp SCCSEEEEEEETTSC-H-HHHHHHHHHHTTTCCE-EEEEECHHHHHHT-TCCBCHHHHHHHH------CSCEEECCTTTC
T ss_pred cCCCEEEEEeCCCch-h-hHHHHHHHHHhcCCCE-EEEEECcCCCCcc-chHHHHHHHHHHc------CCCEEEEEeeCC
Confidence 589999999999853 2 2234555566678885 4589999985311 1101122233333 478999999977
Q ss_pred CcCChhHHHHHHHHHHhhc
Q 010060 217 GKYSKREIRNLARFISVMK 235 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~~ 235 (519)
.++..+...|....
T Consensus 152 -----~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 152 -----EGLEELKEKIVEYA 165 (258)
T ss_dssp -----TTHHHHHHHHHHHH
T ss_pred -----cCHHHHHHHHHHHh
Confidence 67777777666543
No 106
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=3e-13 Score=125.94 Aligned_cols=150 Identities=11% Similarity=0.121 Sum_probs=90.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE--E-EecCceeEEEEcCCCCch-h-HHHHhhccCEEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT--I-VSGKQRRLQFVECPNDIN-G-MIDCAKIADLALLL 145 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it--i-~~~~~~rl~fIDtPGdl~-s-mld~ak~ADlVLLV 145 (519)
.+...|+|+|.+|||||||+++|++...... .......+. + .......+.|+||||... . ....+..+|++|+|
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~d~iilv 105 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLV 105 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHHHHHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCcccchhhhhccCCEEEEE
Confidence 4568999999999999999999998632111 111111111 1 123356799999999643 2 44567889999999
Q ss_pred EeCCCCCcccH-HHHHHHHH----hcCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 146 IDGSYGFEMET-FEFLNLMQ----NHGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L~----~~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
+|++.....+. ..++..+. ..++| +++|+||+|+...... ..+..+ +...+ +.++|++||++|
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~~-~~~~~------~~~~~~~Sa~~g--- 174 (196)
T 2atv_A 106 YDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQVSTEEGEK-LATEL------ACAFYECSACTG--- 174 (196)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCSCHHHHHH-HHHHH------TSEEEECCTTTC---
T ss_pred EECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECcccccccccCHHHHHH-HHHHh------CCeEEEECCCcC---
Confidence 99985322111 12222222 34777 5568999999642111 112221 21111 468999999977
Q ss_pred Chh-HHHHHHHHHHhh
Q 010060 220 SKR-EIRNLARFISVM 234 (519)
Q Consensus 220 ~~~-ei~~LlR~I~~~ 234 (519)
. ++..+...|...
T Consensus 175 --~~gi~~l~~~l~~~ 188 (196)
T 2atv_A 175 --EGNITEIFYELCRE 188 (196)
T ss_dssp --TTCHHHHHHHHHHH
T ss_pred --CcCHHHHHHHHHHH
Confidence 4 566666655543
No 107
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.48 E-value=3e-13 Score=125.64 Aligned_cols=150 Identities=15% Similarity=0.172 Sum_probs=91.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE--EE-EecCceeEEEEcCCCC--chhHHHHhhccCEEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI--TI-VSGKQRRLQFVECPND--INGMIDCAKIADLALLL 145 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i--ti-~~~~~~rl~fIDtPGd--l~smld~ak~ADlVLLV 145 (519)
.....|+|+|.+|||||||+++|++..-... ..++...+ .+ +......+.||||||. +..+...++.||++|+|
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ilv 98 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERYLNWAHAFLVV 98 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCTHHHHTTCSEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhHHHHHhhCCEEEEE
Confidence 3457999999999999999999998631111 11111111 11 1233467889999995 33445677889999999
Q ss_pred EeCCCCCcccH-HHHHHHHHh------cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEec-ccC
Q 010060 146 IDGSYGFEMET-FEFLNLMQN------HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSG-LIH 216 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L~~------~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSA-l~g 216 (519)
+|++.....+. ..++..+.. .++| +|+|+||+|+...... ..+..+ +...+ +.++|.+|| +++
T Consensus 99 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~-~~~~~------~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 99 YSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQVTKAEGVA-LAGRF------GCLFFEVSACLDF 170 (187)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCSSCHHHHHH-HHHHH------TCEEEECCSSSCS
T ss_pred EECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCccCHHHHHH-HHHHc------CCcEEEEeecCcc
Confidence 99985322111 123333332 4777 5568999999632111 112222 21112 458999999 766
Q ss_pred CcCChhHHHHHHHHHHhh
Q 010060 217 GKYSKREIRNLARFISVM 234 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 171 -----~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 171 -----EHVQHVFHEAVRE 183 (187)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHH
Confidence 6788888776654
No 108
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.47 E-value=3.2e-13 Score=125.91 Aligned_cols=151 Identities=12% Similarity=0.132 Sum_probs=89.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc----cEEEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PITIV-SGKQRRLQFVECPND--ING-MIDCAKIADLAL 143 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~iti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVL 143 (519)
.+.+.|+|+|++|+|||||+++|++...........| ...+. ......+.||||||. +.. ....++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 4568999999999999999999998642211110011 01111 223468999999995 223 334578899999
Q ss_pred EEEeCCCCCcccHH-HHHHHHHh-------cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEeccc
Q 010060 144 LLIDGSYGFEMETF-EFLNLMQN-------HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLI 215 (519)
Q Consensus 144 LVVDas~g~e~et~-e~L~~L~~-------~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~ 215 (519)
||+|++.+...+.. .++..+.. .++| +++|+||+|+.............. ....+.++|++||++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLENRQVATKRAQAWC------YSKNNIPYFETSAKE 158 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSSCCCSCHHHHHHHH------HHTTSCCEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCcccccCHHHHHHHH------HhcCCceEEEEeCCC
Confidence 99999864322111 22222221 3667 556899999974221112222211 112467899999997
Q ss_pred CCcCChhHHHHHHHHHHhh
Q 010060 216 HGKYSKREIRNLARFISVM 234 (519)
Q Consensus 216 g~~Y~~~ei~~LlR~I~~~ 234 (519)
| .++..+...|...
T Consensus 159 g-----~gi~~l~~~l~~~ 172 (207)
T 1vg8_A 159 A-----INVEQAFQTIARN 172 (207)
T ss_dssp T-----BSHHHHHHHHHHH
T ss_pred C-----CCHHHHHHHHHHH
Confidence 7 4555555544433
No 109
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=3.2e-13 Score=124.28 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=93.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccc-cE---EE-EecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI---TI-VSGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i---ti-~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
+++.|+|+|++|||||||+++|++...........+ .+ ++ +......+.||||||. +.. ....++.+|++||
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 357999999999999999999998632111111111 01 11 1233568999999995 333 4566789999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|+|++.+...+. ..++..+.. .++| +++|+||+|+....-......+.++. .+.++|++||+++
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~--- 162 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKIDKENREVDRNEGLKFARK-------HSMLFIEASAKTC--- 162 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSCCSCHHHHHHHHHH-------TTCEEEECCTTTC---
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECCcCcccccCHHHHHHHHHH-------cCCEEEEecCCCC---
Confidence 999986432221 233444433 2455 56689999995421111222222111 2468999999977
Q ss_pred ChhHHHHHHHHHHhhcC
Q 010060 220 SKREIRNLARFISVMKF 236 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 163 --~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 163 --DGVQCAFEELVEKII 177 (195)
T ss_dssp --TTHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHH
Confidence 567777766665544
No 110
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.47 E-value=1.8e-13 Score=124.14 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=86.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCcc-cccc-cc-EEEEe---cCceeEEEEcCCCC--chhH-HHHhhccCEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVR-GP-ITIVS---GKQRRLQFVECPND--INGM-IDCAKIADLA 142 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~-G~-iti~~---~~~~rl~fIDtPGd--l~sm-ld~ak~ADlV 142 (519)
.+++.|+|+|++|+|||||+++|++....... ..+. .. ...+. .....+.++||||. +..+ ...++.+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 45689999999999999999999986321111 1110 00 11111 23468999999995 3332 3456889999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHh-------cCCCeEEEEEEccCCCCCHHH--HHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 143 LLLIDGSYGFEMET-FEFLNLMQN-------HGLPRVMGVLTHLDKFKDVKK--LRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 143 LLVVDas~g~e~et-~e~L~~L~~-------~GiP~VI~VlNKlDl~~~~k~--l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
|+|+|++.+...+. ..++..+.. .++| +++|+||+|+...... ..+. ..+.. .....++|++|
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~v~~~~~-~~~~~-----~~~~~~~~~~S 158 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDAEESKKIVSEKSA-QELAK-----SLGDIPLFLTS 158 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTSCGGGCCSCHHHH-HHHHH-----HTTSCCEEEEB
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCccccccccCCHHHH-HHHHH-----hcCCCeEEEEe
Confidence 99999986432221 122322221 4667 5568999999632111 1111 11211 12467899999
Q ss_pred cccCCcCChhHHHHHHHHHHhh
Q 010060 213 GLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~~~ 234 (519)
|++| .++..+...|...
T Consensus 159 a~~~-----~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 159 AKNA-----INVDTAFEEIARS 175 (182)
T ss_dssp TTTT-----BSHHHHHHHHHHH
T ss_pred cCCC-----CCHHHHHHHHHHH
Confidence 9977 5666666655543
No 111
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.47 E-value=1.8e-13 Score=145.22 Aligned_cols=146 Identities=18% Similarity=0.271 Sum_probs=95.2
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccc-----cEEEEecCceeEEEEcCCCCc-------h----h-HHHHhh
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-----PITIVSGKQRRLQFVECPNDI-------N----G-MIDCAK 137 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-----~iti~~~~~~rl~fIDtPGdl-------~----s-mld~ak 137 (519)
+.|+|||.||||||||+|+|++.... .+....| .+..+...+..+.+|||||.. . . +..++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc-eecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 37999999999999999999986311 1111111 011233456789999999932 1 1 344678
Q ss_pred ccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 138 ~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
.||++|||+|++.++.....++..+++..++|. ++|+||+|+.. .. . ..+...|+. .+..++|++||++|
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~-ilv~NK~D~~~--~~-~---~~~~~~~~~--lg~~~~~~iSA~~g- 150 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLRKSTVDT-ILVANKAENLR--EF-E---REVKPELYS--LGFGEPIPVSAEHN- 150 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCE-EEEEESCCSHH--HH-H---HHTHHHHGG--GSSCSCEECBTTTT-
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCCcc--cc-H---HHHHHHHHh--cCCCCEEEEeccCC-
Confidence 999999999999988877777888888778885 56899999852 10 1 111011221 23336799999977
Q ss_pred cCChhHHHHHHHHHHhhc
Q 010060 218 KYSKREIRNLARFISVMK 235 (519)
Q Consensus 218 ~Y~~~ei~~LlR~I~~~~ 235 (519)
.++.+|+..|....
T Consensus 151 ----~gv~~L~~~i~~~l 164 (439)
T 1mky_A 151 ----INLDTMLETIIKKL 164 (439)
T ss_dssp ----BSHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHhc
Confidence 56667766555443
No 112
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.47 E-value=2.1e-13 Score=122.71 Aligned_cols=147 Identities=21% Similarity=0.199 Sum_probs=83.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCcc-ccc-cccE--EE-EecCceeEEEEcCCCC--chh-HH-HHhhccCEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEV-RGPI--TI-VSGKQRRLQFVECPND--ING-MI-DCAKIADLALLL 145 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~-~G~i--ti-~~~~~~rl~fIDtPGd--l~s-ml-d~ak~ADlVLLV 145 (519)
..|+|+|++|||||||+++|++....... ... ...+ ++ .......+.++||||. +.. +. ..++.+|++|+|
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 82 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIV 82 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEE
Confidence 67999999999999999999864211110 000 0111 11 1233567889999995 333 22 236779999999
Q ss_pred EeCCCCCccc--HHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 146 IDGSYGFEME--TFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 146 VDas~g~e~e--t~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|++.....+ ...+..+... .++| +++|+||+|+........+....+.+. .+.++|++||++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~---- 151 (169)
T 3q85_A 83 FSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREVSLEEGRHLAGT------LSCKHIETSAALH---- 151 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGCCSCHHHHHHHHHH------TTCEEEECBTTTT----
T ss_pred EECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcccCCHHHHHHHHHH------cCCcEEEecCccC----
Confidence 9998632111 1122222222 2677 556899999863221111112222221 1568999999977
Q ss_pred hhHHHHHHHHHHh
Q 010060 221 KREIRNLARFISV 233 (519)
Q Consensus 221 ~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 152 -~~v~~l~~~l~~ 163 (169)
T 3q85_A 152 -HNTRELFEGAVR 163 (169)
T ss_dssp -BSHHHHHHHHHH
T ss_pred -CCHHHHHHHHHH
Confidence 566666655544
No 113
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.47 E-value=2.5e-13 Score=125.49 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=88.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE--EE--ecCceeEEEEcCCCC--ch-h-HHHHhhccCEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT--IV--SGKQRRLQFVECPND--IN-G-MIDCAKIADLAL 143 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it--i~--~~~~~rl~fIDtPGd--l~-s-mld~ak~ADlVL 143 (519)
.++.|+|+|.+|+|||||+++|++...... ...+.-.+. .+ ......+.||||||. +. . ....++.||++|
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 457999999999999999999997532111 111110111 11 223468999999995 33 3 334578999999
Q ss_pred EEEeCCCCCcccH-----HHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 144 LLIDGSYGFEMET-----FEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 144 LVVDas~g~e~et-----~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
||+|++.....+. .+++..+...++| +++|+||+|+........+..+.+... .+.++|.+||+++.
T Consensus 99 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~~Sa~~~~- 170 (189)
T 1z06_A 99 FVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQVPTDLAQKFADT------HSMPLFETSAKNPN- 170 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCSCHHHHHHHHHH------TTCCEEECCSSSGG-
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceeCHHHHHHHHHH------cCCEEEEEeCCcCC-
Confidence 9999985322111 1222222234667 556899999964211111112222211 24589999998651
Q ss_pred CChhHHHHHHHHHHhh
Q 010060 219 YSKREIRNLARFISVM 234 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~ 234 (519)
...++..+...|...
T Consensus 171 -~~~~i~~l~~~l~~~ 185 (189)
T 1z06_A 171 -DNDHVEAIFMTLAHK 185 (189)
T ss_dssp -GGSCHHHHHHHHC--
T ss_pred -cccCHHHHHHHHHHH
Confidence 114566666665443
No 114
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.47 E-value=2.7e-13 Score=121.59 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=89.3
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC-ccccccccEE--EEe--cCceeEEEEcCCCC--chh-HHHHhhccCEEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPIT--IVS--GKQRRLQFVECPND--ING-MIDCAKIADLALLL 145 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~it--i~~--~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLV 145 (519)
++.|+|+|++|+|||||+++|++..... ......-.+. .+. +....+.|+||||. +.. ....++.+|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 4789999999999999999999763211 1111111111 111 23457999999995 333 45567899999999
Q ss_pred EeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 146 IDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
+|++.+...+. ..++..+.. .+.| +++|+||+|+.......... ..+...+ +.++|++||++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~-~~~~~~~------~~~~~~~Sa~~~----- 149 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTADQG-EALAKEL------GIPFIESSAKND----- 149 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCCSCHHHH-HHHHHHH------TCCEEECBTTTT-----
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCccCHHHH-HHHHHHc------CCeEEEEECCCC-----
Confidence 99985432211 234444433 2555 56699999995321111122 2222222 358999999977
Q ss_pred hHHHHHHHHHHhh
Q 010060 222 REIRNLARFISVM 234 (519)
Q Consensus 222 ~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 150 ~gv~~l~~~l~~~ 162 (170)
T 1g16_A 150 DNVNEIFFTLAKL 162 (170)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5666666665544
No 115
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.47 E-value=1.5e-13 Score=127.59 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=92.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE-E--EecCceeEEEEcCCCC--chhH-HHHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT-I--VSGKQRRLQFVECPND--INGM-IDCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it-i--~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLL 144 (519)
..+..|+|+|.+|+|||||+++|++...... ..+....+. . ..+....+.|+||||. +..+ ...+..+|++|+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 4568999999999999999999998642111 111111111 1 1223456799999995 3333 345789999999
Q ss_pred EEeCCCCCcccH--HHHHHHHHhc--CCCeEEEEEEccCCCCCH--HHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 145 LIDGSYGFEMET--FEFLNLMQNH--GLPRVMGVLTHLDKFKDV--KKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 145 VVDas~g~e~et--~e~L~~L~~~--GiP~VI~VlNKlDl~~~~--k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
|+|++.....+. ..++..+... ++| +++|+||+|+.... ....+....+...+ ....+|++||++|
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~-- 172 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSDDVTKQEGDDLCQKL-----GCVAYIEASSVAK-- 172 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTTCCCHHHHHHHHHHH-----TCSCEEECBTTTT--
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCCcccHHHHHHHHHhc-----CCCEEEEeecCCC--
Confidence 999986433222 2344444432 455 56689999997421 11111112222211 3334999999977
Q ss_pred CChhHHHHHHHHHHhhcC
Q 010060 219 YSKREIRNLARFISVMKF 236 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 173 ---~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 173 ---IGLNEVFEKSVDCIF 187 (194)
T ss_dssp ---BSHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHH
Confidence 567777766665543
No 116
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.47 E-value=3.4e-13 Score=126.34 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=89.5
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE---EE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT---IV-SGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it---i~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
..+.|+|+|++|+|||||+++|++...... ...+.-.+. +. ......+.||||||. +.. ....+..+|++||
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vil 86 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 86 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEE
Confidence 357999999999999999999998642211 111111111 11 223458999999995 333 3456788999999
Q ss_pred EEeCCCCCcccHH-HHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 145 LIDGSYGFEMETF-EFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 145 VVDas~g~e~et~-e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
|+|++.+...+.. .++..+.. .++| +++|+||+|+........+....+... .+.++|++||++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~g---- 155 (206)
T 2bcg_Y 87 VYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRVVEYDVAKEFADA------NKMPFLETSALDS---- 155 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCHHHHHHHHHH------TTCCEEECCTTTC----
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCHHHHHHHHHH------cCCeEEEEeCCCC----
Confidence 9999864322221 33444433 2455 567899999975321111111122111 2468999999977
Q ss_pred hhHHHHHHHHHHh
Q 010060 221 KREIRNLARFISV 233 (519)
Q Consensus 221 ~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 156 -~gi~~l~~~l~~ 167 (206)
T 2bcg_Y 156 -TNVEDAFLTMAR 167 (206)
T ss_dssp -TTHHHHHHHHHH
T ss_pred -CCHHHHHHHHHH
Confidence 455555544443
No 117
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=140.20 Aligned_cols=153 Identities=8% Similarity=0.042 Sum_probs=95.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEEeCCC
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALLLIDGSY 150 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDas~ 150 (519)
++.|+|+|.+|||||||+++|++..-.....+..-.+..+......+.|+||||. +.. ....++.+|++|||+|++.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~ 244 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 244 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTC
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc
Confidence 4589999999999999999998763111111111112233456778999999995 334 3456789999999999974
Q ss_pred C--CcccHHHHHHHHHhc---CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHH
Q 010060 151 G--FEMETFEFLNLMQNH---GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIR 225 (519)
Q Consensus 151 g--~e~et~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~ 225 (519)
. ++.....+..++... ++| +|+|+||+|+.... ...++...+...+ ....+.++|++||++| .++.
T Consensus 245 ~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~-~~~~i~~~~~~~~--~~~~~~~~~~vSAk~g-----~gi~ 315 (329)
T 3o47_A 245 RERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAM-NAAEITDKLGLHS--LRHRNWYIQATCATSG-----DGLY 315 (329)
T ss_dssp SSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-CHHHHHHHHTCTT--CCSSCEEEEECBTTTT-----BTHH
T ss_pred hHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCccc-CHHHHHHHhchhh--hhcCCCEEEEEECCCC-----cCHH
Confidence 3 322223444444433 566 66689999997532 2233333332111 1124568999999977 6788
Q ss_pred HHHHHHHhhc
Q 010060 226 NLARFISVMK 235 (519)
Q Consensus 226 ~LlR~I~~~~ 235 (519)
.+...|....
T Consensus 316 el~~~l~~~l 325 (329)
T 3o47_A 316 EGLDWLSNQL 325 (329)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887776543
No 118
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.46 E-value=1.1e-13 Score=130.73 Aligned_cols=151 Identities=13% Similarity=0.144 Sum_probs=88.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc----cEEEEecC--ceeEEEEcCCCC--chh-HHHHhhccCEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PITIVSGK--QRRLQFVECPND--ING-MIDCAKIADLA 142 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~iti~~~~--~~rl~fIDtPGd--l~s-mld~ak~ADlV 142 (519)
...+.|+|+|.+|||||||+|+|++...........+ .+.+.... ...+.||||||. +.. ....+..||++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 3468999999999999999999996532211111111 11112222 267999999995 222 23456789999
Q ss_pred EEEEeCCCCCcccHH-HHHHHHH---hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 143 LLLIDGSYGFEMETF-EFLNLMQ---NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 143 LLVVDas~g~e~et~-e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
|||+|++.+...+.. .++..+. ..+.| +++|+||+|+.............+ . ...+.++|++||++|
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~---~---~~~~~~~~~~Sa~~g-- 159 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKIDIKNRQKISKKLVMEV---L---KGKNYEYFEISAKTA-- 159 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC----CCHHHHHHH---T---TTCCCEEEEEBTTTT--
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCHHHHHHH---H---HHcCCcEEEEecCCC--
Confidence 999999865433222 2333333 33667 556899999975321111111111 1 123568999999987
Q ss_pred CChhHHHHHHHHHHhh
Q 010060 219 YSKREIRNLARFISVM 234 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 160 ---~gv~~l~~~l~~~ 172 (218)
T 4djt_A 160 ---HNFGLPFLHLARI 172 (218)
T ss_dssp ---BTTTHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHH
Confidence 4555555544443
No 119
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.46 E-value=3.3e-13 Score=122.69 Aligned_cols=146 Identities=20% Similarity=0.285 Sum_probs=88.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC-ccc--cccccEEEEecCceeEEEEcCCCCc--h------hHHH-Hh--hcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVP--EVRGPITIVSGKQRRLQFVECPNDI--N------GMID-CA--KIA 139 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~--~~~G~iti~~~~~~rl~fIDtPGdl--~------smld-~a--k~A 139 (519)
+..|+|+|++|||||||+++|++..... ... ........+......+.++||||.. . .+.. .+ ..+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 3689999999999999999999853110 000 0001111222345789999999942 1 2222 22 379
Q ss_pred CEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 140 DLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 140 DlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|++++|+|++. ++ ....++..+...++| +|+|.||+|+.... ......+.+...+ +.++|++||++|
T Consensus 83 ~~~i~v~D~~~-~~-~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-~~~~~~~~~~~~~------~~~~~~~SA~~~--- 149 (165)
T 2wji_A 83 DLVVNIVDATA-LE-RNLYLTLQLMEMGAN-LLLALNKMDLAKSL-GIEIDVDKLEKIL------GVKVVPLSAAKK--- 149 (165)
T ss_dssp SEEEEEEETTC-HH-HHHHHHHHHHHTTCC-EEEEEECHHHHHHT-TCCCCHHHHHHHH------TSCEEECBGGGT---
T ss_pred CEEEEEecCCc-hh-HhHHHHHHHHhcCCC-EEEEEEchHhcccc-ChhhHHHHHHHHh------CCCEEEEEcCCC---
Confidence 99999999975 22 223345555557888 55689999985211 0000112222222 368999999987
Q ss_pred ChhHHHHHHHHHHhh
Q 010060 220 SKREIRNLARFISVM 234 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 150 --~~v~~l~~~l~~~ 162 (165)
T 2wji_A 150 --MGIEELKKAISIA 162 (165)
T ss_dssp --BSHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 5777777666543
No 120
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=6.1e-13 Score=123.22 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=93.5
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC-ccccccccE--EEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPI--TIV-SGKQRRLQFVECPND--ING-MIDCAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~i--ti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLV 145 (519)
....|+|+|.+|+|||||+++|++..-.. ...+....+ ++. .+....+.||||||. +.. ....+..+|++|||
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 34799999999999999999999863111 111111111 111 223467899999995 444 33457889999999
Q ss_pred EeCCCCCcccHH--HHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHH---------HHHHHHhhhhhccCCceEEEEe
Q 010060 146 IDGSYGFEMETF--EFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKT---------KQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 146 VDas~g~e~et~--e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~---------kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
+|++.+...+.. .++..+... ++| +++|+||+|+.........+ ...... +. ......++|.+|
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~~~~~S 173 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK-LA-KEIGACCYVECS 173 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH-HH-HHHTCSCEEECC
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcccccchhhcccccCcccCHHHHHH-HH-HHcCCcEEEEee
Confidence 999864322221 344555543 677 55689999997643211100 011111 11 111334899999
Q ss_pred cccCCcCChhHHHHHHHHHHhhc
Q 010060 213 GLIHGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~~~~ 235 (519)
|++| .++..+...|....
T Consensus 174 a~~g-----~gi~~l~~~l~~~i 191 (194)
T 2atx_A 174 ALTQ-----KGLKTVFDEAIIAI 191 (194)
T ss_dssp TTTC-----TTHHHHHHHHHHHH
T ss_pred CCCC-----CCHHHHHHHHHHHH
Confidence 9977 67777777766543
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.45 E-value=2e-13 Score=135.31 Aligned_cols=144 Identities=17% Similarity=0.258 Sum_probs=91.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccc-----cEEEEecCceeEEEEcCCCCc--hh------HH-HH--hh
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-----PITIVSGKQRRLQFVECPNDI--NG------MI-DC--AK 137 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-----~iti~~~~~~rl~fIDtPGdl--~s------ml-d~--ak 137 (519)
.+.|+|+|++|||||||+|+|++... .+....| ....+...+..+.+|||||.. .. +. .. ..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ--HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE--EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 47899999999999999999998742 1111111 011223356679999999942 21 11 11 25
Q ss_pred ccCEEEEEEeCCCCCcccHHHHHHHHHhcC-CCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 138 IADLALLLIDGSYGFEMETFEFLNLMQNHG-LPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 138 ~ADlVLLVVDas~g~e~et~e~L~~L~~~G-iP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
.+|++|+|+|++.+ .....++..+...+ .| +++|+||+|+.... ......+.+.+.+ +.+++++||++|
T Consensus 81 ~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~-~~~~~~~~l~~~l------g~~~~~~Sa~~g 150 (271)
T 3k53_A 81 NADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKKK-GAKIDIKKMRKEL------GVPVIPTNAKKG 150 (271)
T ss_dssp CCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHHH-TCCCCHHHHHHHH------SSCEEECBGGGT
T ss_pred CCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCccc-ccHHHHHHHHHHc------CCcEEEEEeCCC
Confidence 79999999999864 23334444455567 77 55689999986311 1111123344433 578999999977
Q ss_pred CcCChhHHHHHHHHHHhh
Q 010060 217 GKYSKREIRNLARFISVM 234 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 151 -----~gi~~l~~~i~~~ 163 (271)
T 3k53_A 151 -----EGVEELKRMIALM 163 (271)
T ss_dssp -----BTHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHH
Confidence 5677777666554
No 122
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.45 E-value=3.9e-13 Score=131.59 Aligned_cols=155 Identities=12% Similarity=0.078 Sum_probs=94.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC-cc-c--cccc-cEEEEecCceeEEEEcCCCCch--------------hH
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH-NV-P--EVRG-PITIVSGKQRRLQFVECPNDIN--------------GM 132 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v-~--~~~G-~iti~~~~~~rl~fIDtPGdl~--------------sm 132 (519)
.+++.|+|+|++|+|||||+|+|++..... .. . .... ........+.++.||||||... .+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999864111 00 0 0011 1113344567899999999421 12
Q ss_pred HHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhc-----CCCeEEEEEE-ccCCCCCHHHHHHHH--------HHHHHhh
Q 010060 133 IDCAKIADLALLLIDGSYGFEMETFEFLNLMQNH-----GLPRVMGVLT-HLDKFKDVKKLRKTK--------QRLKHRF 198 (519)
Q Consensus 133 ld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~-----GiP~VI~VlN-KlDl~~~~k~l~~~k--------k~Lk~~f 198 (519)
...+..+|++|||+|++. +......++..+... +.|.++ |+| |+|+.... +.... +.+...+
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~-vv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIV-LFTHKEDLNGGS--LMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEE-EEECGGGGTTCC--HHHHHHHCCCHHHHHHHHHT
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEE-EEEcccccCCcc--HHHHHHhcchHHHHHHHHHh
Confidence 235678999999999985 766666666666554 567665 566 99997431 22110 1111111
Q ss_pred hhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcC
Q 010060 199 WTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 199 ~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
...+..... +++||+++ .++..+...|.....
T Consensus 176 ~~~~~~~~~-~~~SA~~~-----~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 176 GGRICAFNN-RAEGSNQD-----DQVKELMDCIEDLLM 207 (260)
T ss_dssp TTCEEECCT-TCCHHHHH-----HHHHHHHHHHHHHHH
T ss_pred CCeEEEecC-cccccccH-----HHHHHHHHHHHHHHH
Confidence 111101122 78898855 677888776665543
No 123
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.45 E-value=6.4e-13 Score=122.47 Aligned_cols=148 Identities=15% Similarity=0.204 Sum_probs=85.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcc-ccccccE--EEE-ecCceeEEEEcCCCC--chhH-HHHhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVRGPI--TIV-SGKQRRLQFVECPND--INGM-IDCAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~G~i--ti~-~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLLV 145 (519)
++..|+|+|.+|||||||+++|++....... ......+ .+. ......+.||||||. +..+ ...+..+|++|+|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 3479999999999999999999976311111 1111111 111 223456899999995 3333 3457899999999
Q ss_pred EeCCCCCcccH-HHHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 146 IDGSYGFEMET-FEFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 146 VDas~g~e~et-~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
+|++.....+. ..++..+.. .++| +++|+||+|+........+..+ +...+ +.++|++||+++
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~-~~~~~------~~~~~~~Sa~~~---- 167 (190)
T 3con_A 100 FAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRTVDTKQAHE-LAKSY------GIPFIETSAKTR---- 167 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSCHHHHHH-HHHHH------TCCEEECCTTTC----
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCcccCCHHHHHH-HHHHc------CCeEEEEeCCCC----
Confidence 99975432221 123333322 3677 5568999998752211122222 22212 357999999977
Q ss_pred hhHHHHHHHHHHh
Q 010060 221 KREIRNLARFISV 233 (519)
Q Consensus 221 ~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 168 -~gi~~l~~~l~~ 179 (190)
T 3con_A 168 -QGVEDAFYTLVR 179 (190)
T ss_dssp -TTHHHHHHHHHH
T ss_pred -CCHHHHHHHHHH
Confidence 456666655543
No 124
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.45 E-value=1.3e-13 Score=126.17 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=68.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC-ccccccccE---EEE-ecCceeEEEEcCCCC--chhH-HHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVRGPI---TIV-SGKQRRLQFVECPND--INGM-IDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLL 144 (519)
..+.|+|+|++|+|||||+++|++..... ....+.-.+ ++. .+....+.|+||||. +..+ ...+..+|++||
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 45799999999999999999999753111 111110001 111 223468999999995 3332 345688999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|+|++.+...+. ..++..+.. .++| +++|+||+|+...... ..+..+ +...+ +.++|++||++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~-~~~~~------~~~~~~~Sa~~~--- 155 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQVSKERGEK-LALDY------GIKFMETSAKAN--- 155 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCCSCHHHHHH-HHHHH------TCEEEECCC------
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccCcCCHHHHHH-HHHHc------CCeEEEEeCCCC---
Confidence 999986432221 234444443 2555 5668999999742211 112222 21111 468999999977
Q ss_pred ChhHHHHHHHHHHh
Q 010060 220 SKREIRNLARFISV 233 (519)
Q Consensus 220 ~~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 156 --~~i~~l~~~l~~ 167 (183)
T 2fu5_C 156 --INVENAFFTLAR 167 (183)
T ss_dssp --CCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHH
Confidence 456666555443
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.45 E-value=8e-14 Score=147.81 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=94.2
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEE------EEecCceeEEEEcCCCCc----------hh-HHHHhh
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPIT------IVSGKQRRLQFVECPNDI----------NG-MIDCAK 137 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~it------i~~~~~~rl~fIDtPGdl----------~s-mld~ak 137 (519)
+.|+|||.||||||||+|+|++.... .+....| +| .....+..+.+|||||.. .. +..++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g-~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPG-VTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCC-CccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999986321 1111122 11 123346789999999952 12 344678
Q ss_pred ccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 138 ~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
.||++|||+|++.++.....++...++..+.| +++|+||+|+..... .+. .|+. .+..++|++||++|
T Consensus 82 ~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~p-vilv~NK~D~~~~~~-------~~~-~~~~--lg~~~~~~iSA~~g- 149 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNTEMRA-------NIY-DFYS--LGFGEPYPISGTHG- 149 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHHHHHHHHTTCCSC-EEEEEECCCC------------CCC-SSGG--GSSCCCEECBTTTT-
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCccchh-------hHH-HHHH--cCCCCeEEEeCcCC-
Confidence 99999999999999888888888888888888 456899999874211 011 1221 12337899999977
Q ss_pred cCChhHHHHHHHHHHhhcC
Q 010060 218 KYSKREIRNLARFISVMKF 236 (519)
Q Consensus 218 ~Y~~~ei~~LlR~I~~~~~ 236 (519)
.++..|+..|....+
T Consensus 150 ----~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 150 ----LGLGDLLDAVAEHFK 164 (436)
T ss_dssp ----BTHHHHHHHHHHTGG
T ss_pred ----CChHHHHHHHHHhcC
Confidence 678888877776554
No 126
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.44 E-value=2.9e-13 Score=123.86 Aligned_cols=149 Identities=17% Similarity=0.137 Sum_probs=89.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccc-cE---EEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG-PI---TIV-SGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G-~i---ti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
..+.|+|+|++|+|||||+++|++...........+ .+ .+. ......+.|+||||. +.. ....+..+|++||
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 88 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 88 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEE
Confidence 458999999999999999999997632111100001 01 111 122358999999995 334 3345789999999
Q ss_pred EEeCCCCCcccH-HHHHHHHH---hcCCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQ---NHGLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~---~~GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|+|++.+...+. ..++..+. ..++| +++|+||+|+..... ...+..+.... .+.++|.+||++|
T Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~--- 157 (186)
T 2bme_A 89 VYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREVTFLEASRFAQE-------NELMFLETSALTG--- 157 (186)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTC---
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccCHHHHHHHHHH-------cCCEEEEecCCCC---
Confidence 999986432221 12333332 24556 566899999963211 11122221111 2468999999977
Q ss_pred ChhHHHHHHHHHHhh
Q 010060 220 SKREIRNLARFISVM 234 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 158 --~gi~~l~~~l~~~ 170 (186)
T 2bme_A 158 --ENVEEAFVQCARK 170 (186)
T ss_dssp --TTHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 4566666555443
No 127
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.44 E-value=8.4e-13 Score=120.16 Aligned_cols=148 Identities=12% Similarity=0.098 Sum_probs=87.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccE--EEE-ecCceeEEEEcCCCCchhHHHHhhccCEEEEEEeC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPI--TIV-SGKQRRLQFVECPNDINGMIDCAKIADLALLLIDG 148 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~i--ti~-~~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDa 148 (519)
.+...|+|+|.+|||||||+++|++..-.....++...+ ++. .+....+.+|||||.-. ...++.||++|+|+|+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~~~~d~~ilv~D~ 82 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD--AKFSGWADAVIFVFSL 82 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC--HHHHHHCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch--hHHHHhCCEEEEEEEC
Confidence 456899999999999999999999863211111111111 111 22345789999999644 3456779999999999
Q ss_pred CCCCcccHH-HH---HHHHHh---cCCCeEEEEEEccCCCC--CHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 149 SYGFEMETF-EF---LNLMQN---HGLPRVMGVLTHLDKFK--DVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 149 s~g~e~et~-e~---L~~L~~---~GiP~VI~VlNKlDl~~--~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
+.+..-+.. .+ +..+.. .++| +++|.||+|+.. ... ...+..+ +... ..+.++|.+||++|
T Consensus 83 ~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~v~~~~~~~-~~~~-----~~~~~~~~~Sa~~~-- 153 (178)
T 2iwr_A 83 EDENSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRISASSPRVVGDARARA-LXAD-----MKRCSYYETXATYG-- 153 (178)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTCBTTBCCCSCHHHHHH-HHHH-----HSSEEEEEEBTTTT--
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccCcCCHHHHHH-HHHh-----hcCCeEEEEecccc--
Confidence 854322222 22 222322 2555 667899999842 111 1112221 1111 13578999999977
Q ss_pred CChhHHHHHHHHHHh
Q 010060 219 YSKREIRNLARFISV 233 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 154 ---~~i~~lf~~l~~ 165 (178)
T 2iwr_A 154 ---LNVDRVFQEVAQ 165 (178)
T ss_dssp ---BTHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHH
Confidence 456666555443
No 128
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.44 E-value=2.4e-13 Score=128.42 Aligned_cols=150 Identities=11% Similarity=0.115 Sum_probs=87.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE---EE-EecC----------ceeEEEEcCCCC--chh-HHH
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI---TI-VSGK----------QRRLQFVECPND--ING-MID 134 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i---ti-~~~~----------~~rl~fIDtPGd--l~s-mld 134 (519)
..+.|+|+|++|||||||+++|++...... ..++.-.+ .+ +... ...+.||||||. +.. ...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~ 103 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA 103 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHH
Confidence 347999999999999999999997532111 11110000 11 1122 467999999995 333 345
Q ss_pred HhhccCEEEEEEeCCCCCcccHH-HHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEE
Q 010060 135 CAKIADLALLLIDGSYGFEMETF-EFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLF 209 (519)
Q Consensus 135 ~ak~ADlVLLVVDas~g~e~et~-e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf 209 (519)
.+..+|++|||+|++.....+.. .++..+.. .++| +++|+||+|+.............+... .+.++|
T Consensus 104 ~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v~~~~~~~~~~~------~~~~~~ 176 (217)
T 2f7s_A 104 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREVNERQARELADK------YGIPYF 176 (217)
T ss_dssp HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTCGGGCCSCHHHHHHHHHH------TTCCEE
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCccccccccCHHHHHHHHHH------CCCcEE
Confidence 67899999999999754322111 22222222 2445 667999999964211111111122111 146899
Q ss_pred EEecccCCcCChhHHHHHHHHHHhh
Q 010060 210 YLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 210 ~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
++||+++ .++..+...|...
T Consensus 177 ~~Sa~~g-----~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 177 ETSAATG-----QNVEKAVETLLDL 196 (217)
T ss_dssp EEBTTTT-----BTHHHHHHHHHHH
T ss_pred EEECCCC-----CCHHHHHHHHHHH
Confidence 9999977 4566666555443
No 129
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.44 E-value=5.3e-13 Score=125.58 Aligned_cols=154 Identities=15% Similarity=0.172 Sum_probs=94.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc-cCccccccccEE--E-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPIT--I-VSGKQRRLQFVECPND--INGMI-DCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLL 144 (519)
.....|+|+|.+|+|||||+++|++..- .....++...+. + ..+....+.||||||. +..+. ..+..+|++||
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 3558999999999999999999997531 111111111121 1 1233468999999995 44433 35788999999
Q ss_pred EEeCCCCCcccHH--HHHHHHHhc--CCCeEEEEEEccCCCCCHHH--------HHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 145 LIDGSYGFEMETF--EFLNLMQNH--GLPRVMGVLTHLDKFKDVKK--------LRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 145 VVDas~g~e~et~--e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~--------l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
|+|++.+...+.. .++..+... ++| +++|+||+|+...... .......+...+ ...++|++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~S 160 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI-----GAAAYIECS 160 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH-----TCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc-----CCceEEEcc
Confidence 9999754322221 344455443 677 5568999999754321 011111222212 335899999
Q ss_pred cccCCcCChhHHHHHHHHHHhhcC
Q 010060 213 GLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
|++| .++..+...|.....
T Consensus 161 a~~g-----~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 161 SKTQ-----QNVKAVFDTAIKVVL 179 (212)
T ss_dssp TTTC-----TTHHHHHHHHHHHHH
T ss_pred CCCC-----CCHHHHHHHHHHHHh
Confidence 9977 567777766655544
No 130
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.44 E-value=4.5e-13 Score=144.43 Aligned_cols=143 Identities=18% Similarity=0.271 Sum_probs=96.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccc----c-EEEEecCceeEEEEcCCCCc------------hhHHHHh
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----P-ITIVSGKQRRLQFVECPNDI------------NGMIDCA 136 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~-iti~~~~~~rl~fIDtPGdl------------~smld~a 136 (519)
+..|+|+|+||||||||+|+|++... ..+....| + ...+...+..++||||||.. ..++..+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 47899999999999999999998631 11111111 1 11223346789999999954 2357788
Q ss_pred hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 137 KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
..||++|+|+|++.+...+..+++..+ .+.| +|+|+||+|+.... ...+ +...+ ....++|++||++|
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~p-iivV~NK~DL~~~~-~~~~----~~~~~----~~~~~~i~iSAktg 389 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRKILERI--KNKR-YLVVINKVDVVEKI-NEEE----IKNKL----GTDRHMVKISALKG 389 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHHHHHHH--TTSS-EEEEEEECSSCCCC-CHHH----HHHHH----TCSTTEEEEEGGGT
T ss_pred hcccEEEEEecCCCCCCHHHHHHHHHh--cCCC-EEEEEECccccccc-CHHH----HHHHh----cCCCcEEEEECCCC
Confidence 999999999999888776666777665 4677 55689999997531 1122 22211 12367999999987
Q ss_pred CcCChhHHHHHHHHHHhh
Q 010060 217 GKYSKREIRNLARFISVM 234 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~ 234 (519)
.++..|...|...
T Consensus 390 -----~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 390 -----EGLEKLEESIYRE 402 (482)
T ss_dssp -----CCHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHH
Confidence 5666666655543
No 131
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.44 E-value=7.4e-13 Score=124.13 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=92.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE--EEE-ecCceeEEEEcCCCC--chhHH-HHhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI--TIV-SGKQRRLQFVECPND--INGMI-DCAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i--ti~-~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLV 145 (519)
.++.|+|+|.+|+|||||+++|++...... .......+ .+. .+....+.||||||. +..+. ..++.+|++|+|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEE
Confidence 457999999999999999999998632111 11111111 111 223458899999995 33333 357889999999
Q ss_pred EeCCCCCcccH--HHHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHH---------HHHHHhhhhhccCCceEEEEe
Q 010060 146 IDGSYGFEMET--FEFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTK---------QRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 146 VDas~g~e~et--~e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~k---------k~Lk~~f~~e~~~~~kVf~lS 212 (519)
+|++.....+. ..++..+... ++| +++|+||+|+.........+. ..... + .......++|++|
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~~~~~~~~S 180 (201)
T 2gco_A 104 FSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD-M-ANRISAFGYLECS 180 (201)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH-H-HHHTTCSEEEECC
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCccchhhhcccccCcCCHHHHHH-H-HHhCCCcEEEEee
Confidence 99975322221 2344455443 777 556899999986432211111 01111 0 1112334899999
Q ss_pred cccCCcCChhHHHHHHHHHHhh
Q 010060 213 GLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~~~ 234 (519)
|++| .++..+...|...
T Consensus 181 A~~g-----~gi~~l~~~i~~~ 197 (201)
T 2gco_A 181 AKTK-----EGVREVFEMATRA 197 (201)
T ss_dssp TTTC-----TTHHHHHHHHHHH
T ss_pred CCCC-----CCHHHHHHHHHHH
Confidence 9977 5777777666543
No 132
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=1.3e-12 Score=123.02 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=93.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcc-ccccccE--EE-EecCceeEEEEcCCCC--chh-HHHHhhccCEEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNV-PEVRGPI--TI-VSGKQRRLQFVECPND--ING-MIDCAKIADLALLL 145 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-~~~~G~i--ti-~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLV 145 (519)
.++.|+|+|.+|||||||+++|++....... ......+ .+ ..+....+.||||||. +.. ....+..+|++|||
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence 3479999999999999999999986321111 1110111 11 1223457899999995 333 33457889999999
Q ss_pred EeCCCCCcccH--HHHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHHHHHHHh--------hhhhccCCceEEEEec
Q 010060 146 IDGSYGFEMET--FEFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHR--------FWTEIYDGAKLFYLSG 213 (519)
Q Consensus 146 VDas~g~e~et--~e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~--------f~~e~~~~~kVf~lSA 213 (519)
+|++.....+. ..++..+... ++| +++|+||+|+.........+. .+..+ -+.......++|++||
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 104 FSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSDEHVRTELA-RMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGCHHHHHHHH-HTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhccccchhhhh-hcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99975422121 2345555443 777 556899999975432211111 11000 0011123348999999
Q ss_pred ccCCcCChhHHHHHHHHHHhhcC
Q 010060 214 LIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
++| .++..+...|.....
T Consensus 182 ~~g-----~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 182 KTK-----EGVREVFETATRAAL 199 (207)
T ss_dssp TTC-----TTHHHHHHHHHHHHH
T ss_pred CCC-----CCHHHHHHHHHHHHH
Confidence 977 577777777766544
No 133
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.42 E-value=2.4e-13 Score=144.98 Aligned_cols=145 Identities=16% Similarity=0.196 Sum_probs=95.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEE------EEecCceeEEEEcCCCC------ch----h-HHHHh
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPIT------IVSGKQRRLQFVECPND------IN----G-MIDCA 136 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~it------i~~~~~~rl~fIDtPGd------l~----s-mld~a 136 (519)
.+.|+|||.||||||||+|+|++.... .+....| +| ........+.+|||||- +. . +..++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g-~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPG-VTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCC-cceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 358999999999999999999986321 1111112 11 12345678999999992 12 2 33456
Q ss_pred hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 137 KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
..||++|||+|+..++.....+++..++..+.|. |+|+||+|+..... .+. .++. .....+|++||.+|
T Consensus 101 ~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pv-ilV~NK~D~~~~~~-------~~~-e~~~--lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAADEEVAKILYRTKKPV-VLAVNKLDNTEMRA-------NIY-DFYS--LGFGEPYPISGTHG 169 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCE-EEEEECC----------------C-CSGG--GSSSSEEECCTTTC
T ss_pred hhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCE-EEEEECccchhhhh-------hHH-HHHH--cCCCceEEeecccc
Confidence 8899999999999999988889999998889884 56899999874211 111 1211 13345689999977
Q ss_pred CcCChhHHHHHHHHHHhhcC
Q 010060 217 GKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~~~ 236 (519)
.++.+|+..+.....
T Consensus 170 -----~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 170 -----LGLGDLLDAVAEHFK 184 (456)
T ss_dssp -----TTHHHHHHHHHTTGG
T ss_pred -----cchHHHHHHHHhhcc
Confidence 677888877765443
No 134
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.42 E-value=4.8e-13 Score=127.64 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=90.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE---EEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI---TIV-SGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
..+.|+|+|++|||||||+++|++...... ...+.-.+ ++. .+....+.||||||. +.. ....+..+|++||
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vil 91 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALI 91 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEE
Confidence 347999999999999999999998632111 11111011 111 122368999999995 333 3445788999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHhc---CCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQNH---GLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|+|++.+...+. ..++..+... ++| +++|+||+|+...... ..+... +... .+.++|++||+++
T Consensus 92 V~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~-~~~~------~~~~~~~~Sa~~~--- 160 (223)
T 3cpj_B 92 VYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLAHLRAVPTEESKT-FAQE------NQLLFTETSALNS--- 160 (223)
T ss_dssp EEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGGGGCCSCHHHHHH-HHHH------TTCEEEECCCC-C---
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccCHHHHHH-HHHH------cCCEEEEEeCCCC---
Confidence 999986433222 1334444432 555 5668999999642111 112221 1111 2468999999977
Q ss_pred ChhHHHHHHHHHHhhcCC
Q 010060 220 SKREIRNLARFISVMKFP 237 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~~~r 237 (519)
.++..+...|......
T Consensus 161 --~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 161 --ENVDKAFEELINTIYQ 176 (223)
T ss_dssp --CCHHHHHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHHHHH
Confidence 5677777777665553
No 135
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.42 E-value=2.4e-13 Score=126.38 Aligned_cols=147 Identities=16% Similarity=0.081 Sum_probs=63.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhc--c-ccCcccccc---ccEEEEec-C--ceeEEEEcCCCC--chhH-HHHhhccC
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKH--Y-TKHNVPEVR---GPITIVSG-K--QRRLQFVECPND--INGM-IDCAKIAD 140 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~--~-Tr~~v~~~~---G~iti~~~-~--~~rl~fIDtPGd--l~sm-ld~ak~AD 140 (519)
.+..|+|+|++|+|||||+++|++. . ......+.. ...++... . ...+.|+||||. +..+ ...+..||
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 3479999999999999999999986 2 111111110 01111112 2 568999999996 3333 34568899
Q ss_pred EEEEEEeCCCCCcccH-HHHHHHHHh------cCCCeEEEEEEccCCCC-CHHH-HHHHHHHHHHhhhhhccCCceEEEE
Q 010060 141 LALLLIDGSYGFEMET-FEFLNLMQN------HGLPRVMGVLTHLDKFK-DVKK-LRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 141 lVLLVVDas~g~e~et-~e~L~~L~~------~GiP~VI~VlNKlDl~~-~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
++|||+|++.+...+. ..++..+.. .++| +++|+||+|+.. .... ..+..+.+ ..+ +.++|++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~v~~~~~~~~~-~~~------~~~~~~~ 170 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRHQVRLDMAQDWA-TTN------TLDFFDV 170 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC-------CCCHHHHHHHH-HHT------TCEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhccCCHHHHHHHH-HHc------CCEEEEe
Confidence 9999999986533221 234444443 3556 566999999975 2111 12222211 111 4689999
Q ss_pred eccc-CCcCChhHHHHHHHHHH
Q 010060 212 SGLI-HGKYSKREIRNLARFIS 232 (519)
Q Consensus 212 SAl~-g~~Y~~~ei~~LlR~I~ 232 (519)
||++ + .++..+...|.
T Consensus 171 Sa~~~~-----~gi~~l~~~i~ 187 (208)
T 2yc2_C 171 SANPPG-----KDADAPFLSIA 187 (208)
T ss_dssp CC------------CHHHHHHH
T ss_pred ccCCCC-----cCHHHHHHHHH
Confidence 9997 6 34444444443
No 136
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.42 E-value=1.8e-12 Score=120.74 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=88.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE-EE--ecCceeEEEEcCCCC--chhHH-HHhhccCEEE
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT-IV--SGKQRRLQFVECPND--INGMI-DCAKIADLAL 143 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it-i~--~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVL 143 (519)
......|+|+|.+|||||||+++|++..-... ..+....+. .+ .+....+.|+||||. +..+. ..+..+|++|
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 34568999999999999999999997531111 111111111 11 122356889999995 33333 3578899999
Q ss_pred EEEeCCCCCcccHH--HHHHHHHh--cCCCeEEEEEEccCCCCCHHHHH------------HHHHHHHHhhhhhccCCce
Q 010060 144 LLIDGSYGFEMETF--EFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLR------------KTKQRLKHRFWTEIYDGAK 207 (519)
Q Consensus 144 LVVDas~g~e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~------------~~kk~Lk~~f~~e~~~~~k 207 (519)
||+|++.....+.. .++..+.. .++| +++|+||+|+........ +....+.. .....+
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~ 170 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE-----EIKAAS 170 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH-----HHTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH-----hcCCcE
Confidence 99999854322222 24444443 3677 556899999975321111 11111111 123458
Q ss_pred EEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 208 LFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 208 Vf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
+|++||++| .++..+...|...
T Consensus 171 ~~~~Sa~~g-----~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 171 YIECSALTQ-----KNLKEVFDAAIVA 192 (201)
T ss_dssp EEECCTTTC-----TTHHHHHHHHHHH
T ss_pred EEEEecCCC-----CCHHHHHHHHHHH
Confidence 999999977 5666666555443
No 137
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.42 E-value=6.5e-13 Score=142.37 Aligned_cols=154 Identities=9% Similarity=0.036 Sum_probs=98.5
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEEEEeCC
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALLLIDGS 149 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDas 149 (519)
..+.|+|+|.+|||||||+++|++........++.-.+..+......+.|+||||. +.. ....+..||++|||+|++
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~ 400 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA 400 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETT
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECc
Confidence 34799999999999999999999874222222221122234556788999999995 334 344678999999999998
Q ss_pred CCC--cccHHHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHH
Q 010060 150 YGF--EMETFEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREI 224 (519)
Q Consensus 150 ~g~--e~et~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei 224 (519)
.+. +.....+..++.. .++| +|+|+||+|+.... ...++.+.+...+ ......++|++||++| .++
T Consensus 401 ~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~SA~~g-----~gi 471 (497)
T 3lvq_E 401 DRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAM-KPHEIQEKLGLTR--IRDRNWYVQPSCATSG-----DGL 471 (497)
T ss_dssp CGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSCC-CHHHHHHHTTCTT--CCSSCEEEEECBTTTT-----BTH
T ss_pred chhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcCC-CHHHHHHHhchhh--hhcCCeEEEEEECCCC-----CCH
Confidence 653 2222233334332 4677 55689999997532 1223333221111 0123557999999977 678
Q ss_pred HHHHHHHHhhc
Q 010060 225 RNLARFISVMK 235 (519)
Q Consensus 225 ~~LlR~I~~~~ 235 (519)
..++..|....
T Consensus 472 ~~l~~~l~~~~ 482 (497)
T 3lvq_E 472 YEGLTWLTSNY 482 (497)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 88887776653
No 138
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.42 E-value=4.9e-13 Score=125.44 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=87.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE--EEE--ecCceeEEEEcCCCC--chh-HHHHhhccCEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI--TIV--SGKQRRLQFVECPND--ING-MIDCAKIADLAL 143 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i--ti~--~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVL 143 (519)
..++.|+|+|.+|||||||+++|++...... .....-.+ ..+ .+....+.|+||||. +.. ....++.||++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 3458999999999999999999997531111 11000001 111 223468999999994 222 345678999999
Q ss_pred EEEeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 144 LLIDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 144 LVVDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
||+|++.+...+. ..++..+.. .++| +++|+||+|+...... ..+..+..+. .+.++|++||++|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~SA~~g-- 172 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLDPEREVTFLEASRFAQE-------NELMFLETSALTG-- 172 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGGGGCCSCHHHHHHHHHH-------TTCEEEEECTTTC--
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccccCHHHHHHHHHH-------cCCEEEEEeCCCC--
Confidence 9999986432221 233333332 3566 6678999999632111 1122221111 2468999999977
Q ss_pred CChhHHHHHHHHHHh
Q 010060 219 YSKREIRNLARFISV 233 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 173 ---~gi~~l~~~l~~ 184 (200)
T 2o52_A 173 ---ENVEEAFLKCAR 184 (200)
T ss_dssp ---TTHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHH
Confidence 456666655443
No 139
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.42 E-value=9.6e-13 Score=123.74 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=89.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc-CccccccccE---EEE-ecCceeEEEEcCCCC--chhH-HHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPEVRGPI---TIV-SGKQRRLQFVECPND--INGM-IDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLL 144 (519)
..+.|+|+|.+|||||||+++|++.... ....++.-.+ ++. ......+.||||||. +..+ ...+..||++||
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIL 107 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEE
Confidence 3479999999999999999999876311 1111110011 111 122368999999996 4443 356789999999
Q ss_pred EEeCCCCCccc-HHHHHHHHHh---cCCCeEEEEEEccCCCCCHH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 145 LIDGSYGFEME-TFEFLNLMQN---HGLPRVMGVLTHLDKFKDVK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 145 VVDas~g~e~e-t~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|+|++.....+ ...++..+.. .++| +++|+||+|+..... ...+..+.+ .. ....++|.+||+++
T Consensus 108 v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~~~~-~~-----~~~~~~~~~SA~~g--- 177 (201)
T 2hup_A 108 AYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELREVSLAEAQSLA-EH-----YDILCAIETSAKDS--- 177 (201)
T ss_dssp EEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCHHHHHHHH-HH-----TTCSEEEECBTTTT---
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCccccccccCHHHHHHHH-HH-----cCCCEEEEEeCCCC---
Confidence 99997542211 1234444443 3455 566899999964211 112222211 11 12238999999977
Q ss_pred ChhHHHHHHHHHHhhc
Q 010060 220 SKREIRNLARFISVMK 235 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~~ 235 (519)
.++..+...|....
T Consensus 178 --~gi~~l~~~l~~~i 191 (201)
T 2hup_A 178 --SNVEEAFLRVATEL 191 (201)
T ss_dssp --BSHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHH
Confidence 56666666655443
No 140
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.42 E-value=2e-12 Score=120.07 Aligned_cols=149 Identities=13% Similarity=0.124 Sum_probs=90.0
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEE--E-EecCceeEEEEcCCCCchhHHHHhhccCEEEEEEe
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPIT--I-VSGKQRRLQFVECPNDINGMIDCAKIADLALLLID 147 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~it--i-~~~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVD 147 (519)
..+.+.|+|+|.+|||||||+++|++..-........+.++ + +.+....+.+|||||.-... .+..||++|+|+|
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~~~~~~~~i~v~d 94 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--FAAWVDAVVFVFS 94 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH--HHHHCSEEEEEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh--eecCCCEEEEEEE
Confidence 45568999999999999999999998631111111112111 1 12334578889999953221 6678999999999
Q ss_pred CCCCCcccH-HHHHHHHHh----cCCCeEEEEEEccCCCCC--HH-HHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 148 GSYGFEMET-FEFLNLMQN----HGLPRVMGVLTHLDKFKD--VK-KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 148 as~g~e~et-~e~L~~L~~----~GiP~VI~VlNKlDl~~~--~k-~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
++.....+. ..++..+.. .++| +++|.||+|+... .. ...+.. .+.. .....++|.+||++|
T Consensus 95 ~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~v~~~~~~-~~~~-----~~~~~~~~e~Sa~~~--- 164 (184)
T 3ihw_A 95 LEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPRVIDDSRAR-KLST-----DLKRCTYYETCATYG--- 164 (184)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCCCSCHHHHH-HHHH-----HTTTCEEEEEBTTTT---
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccccCHHHHH-HHHH-----HcCCCeEEEecCCCC---
Confidence 986432222 234444443 3566 5568999998421 10 111121 1211 123478999999977
Q ss_pred ChhHHHHHHHHHHh
Q 010060 220 SKREIRNLARFISV 233 (519)
Q Consensus 220 ~~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 165 --~gv~~lf~~l~~ 176 (184)
T 3ihw_A 165 --LNVERVFQDVAQ 176 (184)
T ss_dssp --BTHHHHHHHHHH
T ss_pred --CCHHHHHHHHHH
Confidence 566666655544
No 141
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.42 E-value=7.6e-13 Score=126.01 Aligned_cols=154 Identities=17% Similarity=0.183 Sum_probs=93.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE--E-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT--I-VSGKQRRLQFVECPND--INGMI-DCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLL 144 (519)
.....|+|+|.+|||||||+++|++..-... ..++...++ + +......+.||||||. +..+. ..+..||++||
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 3458999999999999999999998631111 111111111 1 1234568999999995 33433 35688999999
Q ss_pred EEeCCCCCcccH--HHHHHHHHhc--CCCeEEEEEEccCCCCCHHHH------------HHHHHHHHHhhhhhccCCceE
Q 010060 145 LIDGSYGFEMET--FEFLNLMQNH--GLPRVMGVLTHLDKFKDVKKL------------RKTKQRLKHRFWTEIYDGAKL 208 (519)
Q Consensus 145 VVDas~g~e~et--~e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l------------~~~kk~Lk~~f~~e~~~~~kV 208 (519)
|+|++.....+. ..++..+... ++| +++|.||+|+....... .+....+... ....++
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~ 178 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ-----LGAEIY 178 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH-----HTCSEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH-----cCCCEE
Confidence 999986533222 2344555443 566 56689999997431111 0111111111 133389
Q ss_pred EEEecccCCcCChhH-HHHHHHHHHhhcC
Q 010060 209 FYLSGLIHGKYSKRE-IRNLARFISVMKF 236 (519)
Q Consensus 209 f~lSAl~g~~Y~~~e-i~~LlR~I~~~~~ 236 (519)
|.+||++| .+ +..+...|.....
T Consensus 179 ~e~SA~~g-----~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 179 LEGSAFTS-----EKSIHSIFRTASMLCL 202 (214)
T ss_dssp EECCTTTC-----HHHHHHHHHHHHHHHH
T ss_pred EEeccCCC-----cccHHHHHHHHHHHHh
Confidence 99999977 55 7888877665544
No 142
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.42 E-value=4.4e-12 Score=132.03 Aligned_cols=151 Identities=21% Similarity=0.242 Sum_probs=90.3
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcccc--CccccccccEE-EEecCceeEEEEcCCCC-----------chhHHHHhhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTK--HNVPEVRGPIT-IVSGKQRRLQFVECPND-----------INGMIDCAKIA 139 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--~~v~~~~G~it-i~~~~~~rl~fIDtPGd-----------l~smld~ak~A 139 (519)
..+|+|+|++|+|||||+|+|++.... ........+++ .+...+..+.++||||. +.++++.+..|
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~a 258 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYS 258 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGS
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhC
Confidence 347999999999999999999986421 00000011111 12223468899999994 23467778999
Q ss_pred CEEEEEEeCCCCC--ccc-H---HHHHHHHHhcCCCeEEEEEEccCCCCCH-HHHHHHHHHHHHhhhhhc-cCCceEEEE
Q 010060 140 DLALLLIDGSYGF--EME-T---FEFLNLMQNHGLPRVMGVLTHLDKFKDV-KKLRKTKQRLKHRFWTEI-YDGAKLFYL 211 (519)
Q Consensus 140 DlVLLVVDas~g~--e~e-t---~e~L~~L~~~GiP~VI~VlNKlDl~~~~-k~l~~~kk~Lk~~f~~e~-~~~~kVf~l 211 (519)
|++|+|+|++.+. ..+ . .++|..+...+.| +|+|+||+|+.... .........+.. .+ ....+++++
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl~~~~~~~~~~~~~~l~~----~l~~~~~~~~~~ 333 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKIDKINGDLYKKLDLVEKLSK----ELYSPIFDVIPI 333 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECGGGCCSCHHHHHHHHHHHHH----HHCSCEEEEEEC
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECCCCCCchHHHHHHHHHHHHH----HhcCCCCcEEEE
Confidence 9999999998654 111 1 1333333334567 56689999998532 111111111111 12 234578999
Q ss_pred ecccCCcCChhHHHHHHHHHHhh
Q 010060 212 SGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
||+++ .++..|...|...
T Consensus 334 SA~~g-----~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 334 SALKR-----TNLELLRDKIYQL 351 (364)
T ss_dssp BTTTT-----BSHHHHHHHHHHH
T ss_pred ECCCC-----cCHHHHHHHHHHH
Confidence 99977 5666666666544
No 143
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.42 E-value=5.8e-13 Score=122.29 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=90.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC-cccc--ccccEEEEecCceeEEEEcCCCC--ch------hHHH-Hh--hc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPE--VRGPITIVSGKQRRLQFVECPND--IN------GMID-CA--KI 138 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~--~~G~iti~~~~~~rl~fIDtPGd--l~------smld-~a--k~ 138 (519)
.+..|+|+|++|||||||+++|++..... .... .......+......+.++||||. +. .+.. .+ ..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 34799999999999999999999852110 0000 00001112334678999999995 21 2222 22 35
Q ss_pred cCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 139 ADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
+|++++|+|++. ++ ....++..+...+.| +++|+||+|+.... .+....+.+.+.+ +.++|++||+++
T Consensus 86 ~~~~i~v~d~~~-~~-~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~~~~~~~~~------~~~~~~~Sa~~~-- 153 (188)
T 2wjg_A 86 PDLVVNIVDATA-LE-RNLYLTLQLMEMGAN-LLLALNKMDLAKSL-GIEIDVDKLEKIL------GVKVVPLSAAKK-- 153 (188)
T ss_dssp CSEEEEEEEGGG-HH-HHHHHHHHHHTTTCC-EEEEEECHHHHHHT-TCCCCHHHHHHHH------TSCEEECBGGGT--
T ss_pred CCEEEEEecchh-HH-HHHHHHHHHHhcCCC-EEEEEEhhhccccc-cchHHHHHHHHHh------CCCeEEEEecCC--
Confidence 999999999974 22 223455556667888 45689999985311 1111112222222 368999999977
Q ss_pred CChhHHHHHHHHHHhhcC
Q 010060 219 YSKREIRNLARFISVMKF 236 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 154 ---~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 154 ---MGIEELKKAISIAVK 168 (188)
T ss_dssp ---BSHHHHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHHH
Confidence 567777777665544
No 144
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.41 E-value=3.9e-12 Score=116.48 Aligned_cols=148 Identities=26% Similarity=0.358 Sum_probs=88.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCc-cccc-cccEEEEecCceeEEEEcCCCC-------------chh----HHHH
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEV-RGPITIVSGKQRRLQFVECPND-------------ING----MIDC 135 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~-~G~iti~~~~~~rl~fIDtPGd-------------l~s----mld~ 135 (519)
..|+|+|.+|||||||+++|++...... .... ....++.. . .+.++||||. +.. .+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec-C--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999998631110 0000 01111111 1 7899999992 111 2233
Q ss_pred -hhccCEEEEEEeCCCC-----------CcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhcc
Q 010060 136 -AKIADLALLLIDGSYG-----------FEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIY 203 (519)
Q Consensus 136 -ak~ADlVLLVVDas~g-----------~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~ 203 (519)
+..++++++|+|++.. ......+++..+...++| +++|+||+|+.... .+..+.+...+...+.
T Consensus 79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV---QEVINFLAEKFEVPLS 154 (190)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH---HHHHHHHHHHHTCCGG
T ss_pred hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-eEEEeehHhccCcH---HHHHHHHHHHhhhhhh
Confidence 6778899999998632 112233456666667888 55689999998643 1222223222210000
Q ss_pred C-CceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 204 D-GAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 204 ~-~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
. ..++|++||++| .++..+...|...
T Consensus 155 ~~~~~~~~~Sa~~~-----~~v~~l~~~l~~~ 181 (190)
T 2cxx_A 155 EIDKVFIPISAKFG-----DNIERLKNRIFEV 181 (190)
T ss_dssp GHHHHEEECCTTTC-----TTHHHHHHHHHHH
T ss_pred ccCCcEEEEecCCC-----CCHHHHHHHHHHh
Confidence 0 246899999977 5677666665544
No 145
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=8.2e-13 Score=125.07 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=88.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccE---EEE-ecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPI---TIV-SGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~i---ti~-~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
..+.|+|+|.+|||||||+++|++...... ..++.-.+ ++. .+....+.|+||||. +.. ....++.||++|+
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 104 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 347999999999999999999997632111 11110001 111 223457999999995 334 3345789999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
|+|++.....+. ...+..+.. .++| +++|+||+|+...... ..+.. .+... .+.++|++||++|
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~-~~~~~------~~~~~~~~Sa~~g--- 173 (201)
T 2ew1_A 105 TYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERREVSQQRAE-EFSEA------QDMYYLETSAKES--- 173 (201)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCSSCHHHHH-HHHHH------HTCCEEECCTTTC---
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCHHHHH-HHHHH------cCCEEEEEeCCCC---
Confidence 999975432111 133333332 3455 5668999999642111 11111 12111 1468999999977
Q ss_pred ChhHHHHHHHHHHhh
Q 010060 220 SKREIRNLARFISVM 234 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 174 --~gv~~l~~~l~~~ 186 (201)
T 2ew1_A 174 --DNVEKLFLDLACR 186 (201)
T ss_dssp --TTHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 5666666555443
No 146
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.40 E-value=3.6e-12 Score=125.05 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=94.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCccc----ccccc-EEEEecCceeEEEEcCCCCc-----------hhHHH
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVP----EVRGP-ITIVSGKQRRLQFVECPNDI-----------NGMID 134 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~----~~~G~-iti~~~~~~rl~fIDtPGdl-----------~smld 134 (519)
..+++.|+|||.+|||||||+|+|++......-. ..... ..........++||||||.+ ..+..
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 3567899999999999999999999864211100 01111 11234457889999999941 12333
Q ss_pred H----hhccCEEEEEEeCCCCCcccHHHHHHHHHhc------CCCeEEEEEEccCCCCCHHHHHHHH-----HHHHHhhh
Q 010060 135 C----AKIADLALLLIDGSYGFEMETFEFLNLMQNH------GLPRVMGVLTHLDKFKDVKKLRKTK-----QRLKHRFW 199 (519)
Q Consensus 135 ~----ak~ADlVLLVVDas~g~e~et~e~L~~L~~~------GiP~VI~VlNKlDl~~~~k~l~~~k-----k~Lk~~f~ 199 (519)
+ +..+|++|+|+|++. +......++..+... +.| +|+|.||+|+.... +.+.. +.++..+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~-iilv~nK~Dl~~~~--~~~~l~~~~~~~l~~l~- 172 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWM-VIVFTRKEDLAGGS--LHDYVSNTENRALRELV- 172 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGE-EEEEECGGGGTTCC--HHHHHHHCCCHHHHHHH-
T ss_pred HHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccE-EEEEEchHhcCCCC--HHHHHhhcccHHHHHHH-
Confidence 3 389999999999974 766666666666553 555 56689999996421 11111 1122211
Q ss_pred hhccCCceEEEEecccCCcCChhHHHHHHHHHHhhcC
Q 010060 200 TEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 200 ~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
.. -+.+++++++.....-....+..|+..|..+..
T Consensus 173 ~~--~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 173 AE--CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp HH--TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 11 134555666443210113677888877765543
No 147
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.40 E-value=2.3e-12 Score=120.95 Aligned_cols=151 Identities=22% Similarity=0.215 Sum_probs=88.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc-Ccccccccc-E--EE-EecCceeEEEEcCCCC--chh-HHH-HhhccCEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPEVRGP-I--TI-VSGKQRRLQFVECPND--ING-MID-CAKIADLA 142 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~~~G~-i--ti-~~~~~~rl~fIDtPGd--l~s-mld-~ak~ADlV 142 (519)
.....|+|+|.+|||||||+++|++.... ......... + .+ +.+....+.++||||. +.. +.. .+..||++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 34589999999999999999999764211 000111010 1 11 2233457889999996 333 333 46789999
Q ss_pred EEEEeCCCCCccc-HHHHHHHHHh----cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 143 LLLIDGSYGFEME-TFEFLNLMQN----HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 143 LLVVDas~g~e~e-t~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
|||+|++....-+ ....+..+.. .++| +|+|.||+|+...... ..+.. .+...+ +.++|.+||+++
T Consensus 101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~-~~a~~~------~~~~~e~Sa~~~ 172 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREVSLEEGR-HLAGTL------SCKHIETSAALH 172 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCTTTCCSCHHHHH-HHHHHT------TCEEEEEBTTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhccccCCcCHHHHH-HHHHHh------CCEEEEEcCCCC
Confidence 9999997532211 1123333332 3667 5568999999743211 11222 121111 468999999977
Q ss_pred CcCChhHHHHHHHHHHhhc
Q 010060 217 GKYSKREIRNLARFISVMK 235 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~~ 235 (519)
.++..+...|....
T Consensus 173 -----~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 173 -----HNTRELFEGAVRQI 186 (195)
T ss_dssp -----BSHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHH
Confidence 56677776665543
No 148
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.40 E-value=1e-12 Score=131.37 Aligned_cols=144 Identities=17% Similarity=0.256 Sum_probs=91.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccc----cEE-EEecCceeEEEEcCCCC--ch------hHH-HHh--h
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----PIT-IVSGKQRRLQFVECPND--IN------GMI-DCA--K 137 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~it-i~~~~~~rl~fIDtPGd--l~------sml-d~a--k 137 (519)
...|+++|.||||||||+|+|++... .+....| ..+ .+.. ...+.+|||||. +. .+. ..+ .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~--~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC--CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 47899999999999999999998631 1111111 011 1223 568999999995 32 222 223 3
Q ss_pred ccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 138 IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 138 ~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
.+|++|+|+|++.. + ....++..+...++|.+ +|+||+|+.... ......+.+...+ +.++|++||++|
T Consensus 80 ~~d~vi~V~D~t~~-e-~~~~~~~~l~~~~~p~i-lv~NK~Dl~~~~-~~~~~~~~l~~~l------g~~vi~~SA~~g- 148 (272)
T 3b1v_A 80 RADSILNVVDATNL-E-RNLYLTTQLIETGIPVT-IALNMIDVLDGQ-GKKINVDKLSYHL------GVPVVATSALKQ- 148 (272)
T ss_dssp CCSEEEEEEEGGGH-H-HHHHHHHHHHHTCSCEE-EEEECHHHHHHT-TCCCCHHHHHHHH------TSCEEECBTTTT-
T ss_pred CCCEEEEEecCCch-H-hHHHHHHHHHhcCCCEE-EEEEChhhCCcC-CcHHHHHHHHHHc------CCCEEEEEccCC-
Confidence 69999999999752 1 22334445556789954 589999985311 1111112233322 468999999977
Q ss_pred cCChhHHHHHHHHHHhhc
Q 010060 218 KYSKREIRNLARFISVMK 235 (519)
Q Consensus 218 ~Y~~~ei~~LlR~I~~~~ 235 (519)
.++..+...|....
T Consensus 149 ----~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 149 ----TGVDQVVKKAAHTT 162 (272)
T ss_dssp ----BSHHHHHHHHHHSC
T ss_pred ----CCHHHHHHHHHHHH
Confidence 67888887776643
No 149
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.39 E-value=2.5e-12 Score=144.34 Aligned_cols=65 Identities=14% Similarity=0.293 Sum_probs=50.0
Q ss_pred eeEEEEcCCCC-----c-hhHHHHhhccCEEEEEEeCCCCCcccHHHHHH-HHHhcCCCeEEEEEEccCCCCC
Q 010060 118 RRLQFVECPND-----I-NGMIDCAKIADLALLLIDGSYGFEMETFEFLN-LMQNHGLPRVMGVLTHLDKFKD 183 (519)
Q Consensus 118 ~rl~fIDtPGd-----l-~smld~ak~ADlVLLVVDas~g~e~et~e~L~-~L~~~GiP~VI~VlNKlDl~~~ 183 (519)
..++||||||. . ..+...+..||++|||+|++.++.....+++. .+...+.| +++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccccc
Confidence 46999999993 2 22567788999999999999888766666553 55556888 6679999999743
No 150
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.39 E-value=2.6e-12 Score=121.91 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=84.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE--E-EecCceeEEEEcCCCC--chhHH-HHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT--I-VSGKQRRLQFVECPND--INGMI-DCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLL 144 (519)
..+..|+|+|.+|||||||+++|++...... ..+....+. + +.+....+.||||||. +..+. ..+..||++||
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 3458999999999999999999997531111 111101111 1 1223457999999995 33433 35688999999
Q ss_pred EEeCCCCCcccHH--HHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHH---------HHHHHhhhhhccCCceEEEE
Q 010060 145 LIDGSYGFEMETF--EFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTK---------QRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 145 VVDas~g~e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~k---------k~Lk~~f~~e~~~~~kVf~l 211 (519)
|+|++.+...+.. .++..+.. .++| +|+|+||+|+.........+. ..... + .......++|++
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~~~~~~~~ 188 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE-M-ARSVGAVAYLEC 188 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHH-H-HHHTTCSEEEEC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhccchhhhhhcccccCcccHHHHHH-H-HHhcCCCEEEEe
Confidence 9999854322221 23444433 3677 556899999986432211110 01111 1 111233589999
Q ss_pred ecccCCcCChhHHHHHHHHHHhhc
Q 010060 212 SGLIHGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~~~~ 235 (519)
||++| .++.++...|....
T Consensus 189 SA~~g-----~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 189 SARLH-----DNVHAVFQEAAEVA 207 (214)
T ss_dssp BTTTT-----BSHHHHHHHHHHHH
T ss_pred cCCCC-----CCHHHHHHHHHHHH
Confidence 99977 56777776665443
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.39 E-value=2.4e-12 Score=127.84 Aligned_cols=151 Identities=20% Similarity=0.268 Sum_probs=88.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc---------ccccc-ccEEEE-e--cCceeEEEEcCCCC---------ch
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN---------VPEVR-GPITIV-S--GKQRRLQFVECPND---------IN 130 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~---------v~~~~-G~iti~-~--~~~~rl~fIDtPGd---------l~ 130 (519)
..+.|+|+|.+|+|||||+|+|++...... ..++. ...+.. . +...++++|||||. +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 457899999999999999999987631100 00010 011111 1 12348999999994 22
Q ss_pred hHH--------HHhh-------------ccCEEEEEEeCC-CCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHH
Q 010060 131 GMI--------DCAK-------------IADLALLLIDGS-YGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLR 188 (519)
Q Consensus 131 sml--------d~ak-------------~ADlVLLVVDas-~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~ 188 (519)
.++ ..+. .+|++|++++++ .++.....+++..+.. ++| +|+|+||+|+.. ...+.
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~p-vi~V~nK~D~~~-~~e~~ 163 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADTLT-PEECQ 163 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSC-EEEEESSGGGSC-HHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCC-EEEEEeccCCCC-HHHHH
Confidence 222 1111 277888888665 5788888888888877 788 556899999985 34445
Q ss_pred HHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 189 KTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 189 ~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
..++.+.+.+.. .+.++|++||.++ .++..+...|...
T Consensus 164 ~~~~~i~~~l~~---~~i~v~~~sa~~~-----~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 164 QFKKQIMKEIQE---HKIKIYEFPETDD-----EEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHH---TTCCCCCC----------------CHHHHHT
T ss_pred HHHHHHHHHHHH---cCCeEEcCCCCCC-----hhHHHHHHHHhcC
Confidence 555555443321 4567888998865 5666666666543
No 152
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.39 E-value=2.2e-13 Score=144.64 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=99.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccc------cEEEEecCceeEEEEcCCCC--c--------hhHHHH
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG------PITIVSGKQRRLQFVECPND--I--------NGMIDC 135 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G------~iti~~~~~~rl~fIDtPGd--l--------~smld~ 135 (519)
...+.|+|+|++|+|||||+|+|++.... .+....| ...+.......+.||||||. + ..+...
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVS-IVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 44589999999999999999999986421 0111111 11111222348999999994 1 235677
Q ss_pred hhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEeccc
Q 010060 136 AKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLI 215 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~ 215 (519)
+..+|++|||+|+ +...++.+++..+...++|. |+|+||+|+...... +..+.+.+ . -+.++|++||++
T Consensus 111 l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~pi-IvV~NK~Dl~~~~~~--~~~~~l~~-----~-~g~~v~~vSAkt 179 (423)
T 3qq5_A 111 FYRADCGILVTDS--APTPYEDDVVNLFKEMEIPF-VVVVNKIDVLGEKAE--ELKGLYES-----R-YEAKVLLVSALQ 179 (423)
T ss_dssp HTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCE-EEECCCCTTTTCCCT--HHHHHSSC-----C-TTCCCCCCSSCC
T ss_pred HhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCE-EEEEeCcCCCCccHH--HHHHHHHH-----H-cCCCEEEEECCC
Confidence 8899999999999 67777788999999889995 468999999864322 22222211 1 246899999997
Q ss_pred CCcCChhHHHHHHHHHHhhcCC
Q 010060 216 HGKYSKREIRNLARFISVMKFP 237 (519)
Q Consensus 216 g~~Y~~~ei~~LlR~I~~~~~r 237 (519)
| .++..+...|....+.
T Consensus 180 g-----~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 180 K-----KGFDDIGKTISEILPG 196 (423)
T ss_dssp T-----TSTTTHHHHHHHHSCC
T ss_pred C-----CCHHHHHHHHHHhhhh
Confidence 7 5667777777666543
No 153
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.38 E-value=7.6e-13 Score=132.72 Aligned_cols=67 Identities=15% Similarity=0.276 Sum_probs=49.9
Q ss_pred CceeEEEEcCCCCch---------------h-HHHHhhccCEEEEEEeC-CCCCcccH-HHHHHHHHhcCCCeEEEEEEc
Q 010060 116 KQRRLQFVECPNDIN---------------G-MIDCAKIADLALLLIDG-SYGFEMET-FEFLNLMQNHGLPRVMGVLTH 177 (519)
Q Consensus 116 ~~~rl~fIDtPGdl~---------------s-mld~ak~ADlVLLVVDa-s~g~e~et-~e~L~~L~~~GiP~VI~VlNK 177 (519)
....++||||||... . +..++..||++|||+|+ +.++..+. ..++..+...+.|.+ +|+||
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i-~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTI-GVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEE-EEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEE-EEEcC
Confidence 346899999999431 1 34567899999999997 56665444 478888877788854 58999
Q ss_pred cCCCCC
Q 010060 178 LDKFKD 183 (519)
Q Consensus 178 lDl~~~ 183 (519)
+|+...
T Consensus 208 ~Dl~~~ 213 (315)
T 1jwy_B 208 LDLMDK 213 (315)
T ss_dssp TTSSCS
T ss_pred cccCCc
Confidence 999864
No 154
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.38 E-value=9.7e-13 Score=141.65 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=85.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCcccccccc----E-EEEecCceeEEEEcCCCC--ch---------hHHHHhh
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGP----I-TIVSGKQRRLQFVECPND--IN---------GMIDCAK 137 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~----i-ti~~~~~~rl~fIDtPGd--l~---------smld~ak 137 (519)
++.|+|+|+||||||||+|+|++... ..+....|. + ..+...+..+.||||||. +. .++..+.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 46799999999999999999998631 111111110 0 112335678999999994 11 1234578
Q ss_pred ccCEEEEEEeCCCCCcc----cHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 138 IADLALLLIDGSYGFEM----ETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 138 ~ADlVLLVVDas~g~e~----et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.||++|||+|++.+... +..+++..+. +.| +|+|+||+|+..... .. . +.+... ...++|++||
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~p-iIvV~NK~Dl~~~~~-~~-~-~~l~~~------~~~~~i~vSA 379 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAHP--AAK-FLTVANKLDRAANAD-AL-I-RAIADG------TGTEVIGISA 379 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSE-EEEEEECTTSCTTTH-HH-H-HHHHHH------HTSCEEECBT
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCC-EEEEEECcCCCCccc-hh-H-HHHHhc------CCCceEEEEE
Confidence 89999999999987765 3334544443 555 667999999986432 21 1 223221 1257999999
Q ss_pred ccCCcCChhHHHHHHHHHHhhc
Q 010060 214 LIHGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~~~ 235 (519)
++| .++..|...|....
T Consensus 380 ktg-----~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 380 LNG-----DGIDTLKQHMGDLV 396 (476)
T ss_dssp TTT-----BSHHHHHHHHTHHH
T ss_pred CCC-----CCHHHHHHHHHHHH
Confidence 977 67777776665544
No 155
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.38 E-value=5.1e-13 Score=132.64 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=87.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc--C--cccccccc---------------------------------------
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK--H--NVPEVRGP--------------------------------------- 109 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--~--~v~~~~G~--------------------------------------- 109 (519)
..+.|+|+|.+|||||||+|+|++..-. . .++...+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4469999999999999999999986310 0 00000110
Q ss_pred ----------E--EEEecCceeEEEEcCCCCc---------------hh-HHHHhhccCEEE-EEEeCCCCCcccHH-HH
Q 010060 110 ----------I--TIVSGKQRRLQFVECPNDI---------------NG-MIDCAKIADLAL-LLIDGSYGFEMETF-EF 159 (519)
Q Consensus 110 ----------i--ti~~~~~~rl~fIDtPGdl---------------~s-mld~ak~ADlVL-LVVDas~g~e~et~-e~ 159 (519)
+ .+.......++||||||.. .. +..++..++.+| +|+|++.++..+.. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 0 0111113689999999932 12 334566777555 79999988877664 57
Q ss_pred HHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 160 LNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 160 L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
+..+...+.|. |+|+||+|+....... .+.+...++....+..+++++||+++.
T Consensus 185 ~~~~~~~~~~~-i~V~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 185 AKEVDPQGQRT-IGVITKLDLMDEGTDA---RDVLENKLLPLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp HHHHCTTCSSE-EEEEECGGGSCTTCCC---HHHHTTCSSCCTTCEEECCCCCCBCTT
T ss_pred HHHhCCCCCeE-EEEEEccccCCCCchH---HHHHhCCcCcCCCCcEEEECCChhhcc
Confidence 77777678884 5689999998543211 122222111100123578999999873
No 156
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.38 E-value=4.6e-12 Score=116.67 Aligned_cols=156 Identities=18% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE--EE-ecCceeEEEEcCCCC--chhHH-HHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT--IV-SGKQRRLQFVECPND--INGMI-DCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it--i~-~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLL 144 (519)
.....|+|+|++|||||||+++|++..-... ..++...++ +. ......+.||||||. +..+. ..+..||++|+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 4568999999999999999999998631111 111111111 11 233567899999995 33333 35689999999
Q ss_pred EEeCCCCCcccHH--HHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHH---------HHHHHhhhhhccCCceEEEE
Q 010060 145 LIDGSYGFEMETF--EFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTK---------QRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 145 VVDas~g~e~et~--e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~k---------k~Lk~~f~~e~~~~~kVf~l 211 (519)
|+|++.....+.. .++..+.. .+.| +++|+||+|+..+.....++. ..... +. ......++|.+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~~~e~ 161 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-MA-KQIGAATYIEC 161 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-HH-HHHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH-HH-HHcCCcEEEEe
Confidence 9999854322221 23333433 3555 667999999975322111110 11111 11 11234689999
Q ss_pred ecccCCcCChhHHHHHHHHHHhh
Q 010060 212 SGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
||+++ ..++..+...|...
T Consensus 162 Sa~~~----~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 162 SALQS----ENSVRDIFHVATLA 180 (184)
T ss_dssp BTTTB----HHHHHHHHHHHHHH
T ss_pred eecCC----CcCHHHHHHHHHHH
Confidence 99832 25677777666544
No 157
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.37 E-value=7.6e-13 Score=136.79 Aligned_cols=147 Identities=17% Similarity=0.202 Sum_probs=92.8
Q ss_pred EEEEECCCCCChHHHHHHHHhcccc---CccccccccEEEEecC-ceeEEEEcCCCC---------c-hhHHHHhhccCE
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHYTK---HNVPEVRGPITIVSGK-QRRLQFVECPND---------I-NGMIDCAKIADL 141 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~Tr---~~v~~~~G~iti~~~~-~~rl~fIDtPGd---------l-~smld~ak~ADl 141 (519)
.|+|+|+||||||||+|+|++.... ....+....+.++... ...++|+||||. + ..++..+..+|+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ 239 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 239 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence 6899999999999999999986311 0111111122233333 378999999983 2 236777788999
Q ss_pred EEEEEeCCCC---CcccH-HHHHHHHHh-----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 142 ALLLIDGSYG---FEMET-FEFLNLMQN-----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 142 VLLVVDas~g---~e~et-~e~L~~L~~-----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
+|+|+|++.. -..+. ..++..|.. ..+|.+ +|+||+|+....+.+ +.+.+.+ ....++|++|
T Consensus 240 ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~i-lV~NK~Dl~~~~e~~----~~l~~~l----~~~~~v~~iS 310 (342)
T 1lnz_A 240 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI-IVANKMDMPEAAENL----EAFKEKL----TDDYPVFPIS 310 (342)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC-BEEECTTSTTHHHHH----HHHHHHC----CSCCCBCCCS
T ss_pred EEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEE-EEEECccCCCCHHHH----HHHHHHh----hcCCCEEEEE
Confidence 9999999752 11111 234455554 367754 589999998533222 2232222 1226789999
Q ss_pred cccCCcCChhHHHHHHHHHHhhcC
Q 010060 213 GLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
|+++ ..+..|+..|.....
T Consensus 311 A~tg-----~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 311 AVTR-----EGLRELLFEVANQLE 329 (342)
T ss_dssp SCCS-----STTHHHHHHHHHHHT
T ss_pred CCCC-----cCHHHHHHHHHHHHh
Confidence 9977 567777766665543
No 158
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.37 E-value=4e-14 Score=132.42 Aligned_cols=153 Identities=13% Similarity=0.081 Sum_probs=87.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-ccccc--ccEEEE--ecCceeEEEEcCCCC--chh-HHHHhhccCEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVR--GPITIV--SGKQRRLQFVECPND--ING-MIDCAKIADLAL 143 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~--G~iti~--~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVL 143 (519)
..++.|+|+|.+|||||||+++|++...... ..... -.+..+ ......+.||||||. +.. ....+..+|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4468999999999999999999987532111 01110 011111 223357999999995 333 334578899999
Q ss_pred EEEeCCCCCcccH-HHHHHHHHhc---CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcC
Q 010060 144 LLIDGSYGFEMET-FEFLNLMQNH---GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKY 219 (519)
Q Consensus 144 LVVDas~g~e~et-~e~L~~L~~~---GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y 219 (519)
||+|++.....+. ..++..+... ++| +++|+||+|+.............+... -+.++|++||+++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~vSA~~g--- 180 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVDYTTAKEFADS------LGIPFLETSAKNA--- 180 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--CCCCSCC-CHHHHT------TTCCBCCCCC------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCCccccCCHHHHHHHHHH------cCCeEEEEECCCC---
Confidence 9999986433222 2344444433 555 556899999964211100011111111 2467899999966
Q ss_pred ChhHHHHHHHHHHhhcC
Q 010060 220 SKREIRNLARFISVMKF 236 (519)
Q Consensus 220 ~~~ei~~LlR~I~~~~~ 236 (519)
.++.++...|.....
T Consensus 181 --~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 181 --TNVEQSFMTMAAEIK 195 (199)
T ss_dssp --HHHHHHHHHHTTTTT
T ss_pred --CCHHHHHHHHHHHHH
Confidence 788888888765543
No 159
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.36 E-value=1.4e-12 Score=123.21 Aligned_cols=142 Identities=13% Similarity=0.193 Sum_probs=78.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chh-HHHHhhc----cCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--ING-MIDCAKI----ADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~----ADlVLL 144 (519)
...+.|+|+|++|+|||||+++|++......+..... .+........+.++||||. +.. ....+.. +|++|+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~ 88 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEP-LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF 88 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSC-EEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCc-eEEEEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEE
Confidence 4567999999999999999999998743222111111 1111224568999999995 333 2233343 899999
Q ss_pred EEeCC---CCCcccHHHHHHHHHh------cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh-ccCCceEEEEecc
Q 010060 145 LIDGS---YGFEMETFEFLNLMQN------HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE-IYDGAKLFYLSGL 214 (519)
Q Consensus 145 VVDas---~g~e~et~e~L~~L~~------~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e-~~~~~kVf~lSAl 214 (519)
|+|++ ..+......+..++.. .++| +++|+||+|+.... ....+.+.+...+... ...+.+++.+||+
T Consensus 89 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~ 166 (218)
T 1nrj_B 89 MVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTAR-PPSKIKDALESEIQKVIERRKKSLNEVERK 166 (218)
T ss_dssp EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred EEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHhcccC-CHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 99998 3343333333333332 4677 55689999997542 1222222222111000 0113567889988
Q ss_pred cC
Q 010060 215 IH 216 (519)
Q Consensus 215 ~g 216 (519)
+|
T Consensus 167 ~~ 168 (218)
T 1nrj_B 167 IN 168 (218)
T ss_dssp --
T ss_pred cc
Confidence 76
No 160
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.36 E-value=8.1e-13 Score=141.75 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=93.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccccE-----EEEecCceeEEEEcCCCC--c---------hhHHHHh
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPI-----TIVSGKQRRLQFVECPND--I---------NGMIDCA 136 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~i-----ti~~~~~~rl~fIDtPGd--l---------~smld~a 136 (519)
.+..|+|+|+||+|||||+|+|++... ..+....|.. ..+...+..+.||||||. . ..++..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDR-AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHB-SCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 347899999999999999999998631 1111111100 012234578999999994 1 1234457
Q ss_pred hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 137 KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
..||++|+|+|++.++..+..+++..+.. .| +|+|+||+|+..... .. . ...+....++|++||++|
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~p-iivV~NK~Dl~~~~~-~~----~-----~~~~~~~~~~i~iSAktg 368 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGDQEIYEQVKH--RP-LILVMNKIDLVEKQL-IT----S-----LEYPENITQIVHTAAAQK 368 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHHHHHHHHHTT--SC-EEEEEECTTSSCGGG-ST----T-----CCCCTTCCCEEEEBTTTT
T ss_pred hcCCEEEEEeccCCCCCHHHHHHHHhccC--Cc-EEEEEECCCCCcchh-hH----H-----HHHhccCCcEEEEECCCC
Confidence 88999999999999888777777777643 56 566899999985321 11 1 112234678999999977
Q ss_pred CcCChhHHHHHHHHHHhhcC
Q 010060 217 GKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~~~ 236 (519)
.++..|...|.....
T Consensus 369 -----~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 369 -----QGIDSLETAILEIVQ 383 (462)
T ss_dssp -----BSHHHHHHHHHHHHT
T ss_pred -----CCHHHHHHHHHHHHh
Confidence 677777777766544
No 161
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.35 E-value=6.9e-12 Score=121.35 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=86.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCcc----ccccccE-EEEecCceeEEEEcCCCCch----------hHH---
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNV----PEVRGPI-TIVSGKQRRLQFVECPNDIN----------GMI--- 133 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v----~~~~G~i-ti~~~~~~rl~fIDtPGdl~----------sml--- 133 (519)
..++.|+|+|++|+|||||+|+|++......- ....... ......+..+.||||||... .+.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999996421110 0001111 12234567899999999421 122
Q ss_pred -HHhhccCEEEEEEeCCCCCcccHHHHHHHHH-----hcCCCeEEEEEEccCCCCCHHHHHHHH----HHHHHhhhhhcc
Q 010060 134 -DCAKIADLALLLIDGSYGFEMETFEFLNLMQ-----NHGLPRVMGVLTHLDKFKDVKKLRKTK----QRLKHRFWTEIY 203 (519)
Q Consensus 134 -d~ak~ADlVLLVVDas~g~e~et~e~L~~L~-----~~GiP~VI~VlNKlDl~~~~k~l~~~k----k~Lk~~f~~e~~ 203 (519)
..+..+|++|+|+|++ .+.......+..+. ....| +|+|+||+|+.... .+.+.. +.++..+ ..+
T Consensus 107 ~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~-~iiv~nK~D~~~~~-~~~~~i~~~~~~l~~l~-~~~- 181 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSF-MILIFTRKDDLGDT-NLHDYLREAPEDIQDLM-DIF- 181 (239)
T ss_dssp HHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGG-EEEEEECGGGC-------------CHHHHHHH-HHH-
T ss_pred HhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccce-EEEEEeCCccCCcc-cHHHHHHhchHHHHHHH-HHc-
Confidence 2345679999999997 45444444444442 12345 55689999997532 222111 1122211 111
Q ss_pred CCceEEEEecccCCcCChhHHHHHHHHHHhhc
Q 010060 204 DGAKLFYLSGLIHGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 204 ~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~ 235 (519)
+.++++++...+..-....+..|+..|..+.
T Consensus 182 -~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 182 -GDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp -SSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 3356666654321112246777776665543
No 162
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.35 E-value=2.2e-11 Score=139.43 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=78.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC--------ccc------cccc------cEEEE-e--------------cCce
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH--------NVP------EVRG------PITIV-S--------------GKQR 118 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--------~v~------~~~G------~iti~-~--------------~~~~ 118 (519)
.++|+|+|++|+|||||+++|+...... ... ..+| .+++. . ....
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 4799999999999999999999752100 000 0111 11111 1 1257
Q ss_pred eEEEEcCCCC--chh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 119 RLQFVECPND--ING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 119 rl~fIDtPGd--l~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
.+.||||||+ +.. +..++..||.+|+|+|++.+...++..++..+...++|.+ +|+||+|+.
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-lviNK~D~~ 163 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPV-VVINKVDRA 163 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEE-EEEECHHHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeE-EEEECCCcc
Confidence 8999999996 444 6678899999999999999999999888887777899865 589999986
No 163
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.34 E-value=1.3e-11 Score=127.47 Aligned_cols=149 Identities=21% Similarity=0.320 Sum_probs=91.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC-cccc-cccc-EEEEecCceeEEEEcCCCCch-----------h-HHHHh
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPE-VRGP-ITIVSGKQRRLQFVECPNDIN-----------G-MIDCA 136 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~-~~G~-iti~~~~~~rl~fIDtPGdl~-----------s-mld~a 136 (519)
..+..|+|+|++|||||||+|+|++..... .... ..+. +..+......+.++||||... . +...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 566899999999999999999999864110 0000 0111 111223456799999999521 1 22234
Q ss_pred hccCEEEEEEeCCCCC--cccH-HHHHHHHHh-c-CCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEE
Q 010060 137 KIADLALLLIDGSYGF--EMET-FEFLNLMQN-H-GLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 137 k~ADlVLLVVDas~g~--e~et-~e~L~~L~~-~-GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
..||.+|||+|++.+. ..+. ..++..+.. . +.| +|+|+||+|+... ..+.+..+.+.. .+.++|++
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~Dl~~~-~~~~~~~~~~~~-------~~~~~~~i 315 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKIDVADE-ENIKRLEKFVKE-------KGLNPIKI 315 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTTTCCH-HHHHHHHHHHHH-------TTCCCEEC
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcccCCh-HHHHHHHHHHHh-------cCCCeEEE
Confidence 5699999999987532 3332 344444443 2 777 5568999999853 233333322221 34679999
Q ss_pred ecccCCcCChhHHHHHHHHHHhh
Q 010060 212 SGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
||++| .++..+...|...
T Consensus 316 SA~~g-----~gi~~l~~~i~~~ 333 (357)
T 2e87_A 316 SALKG-----TGIDLVKEEIIKT 333 (357)
T ss_dssp BTTTT-----BTHHHHHHHHHHH
T ss_pred eCCCC-----cCHHHHHHHHHHH
Confidence 99987 4566666555443
No 164
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.33 E-value=1.1e-11 Score=116.10 Aligned_cols=155 Identities=12% Similarity=0.137 Sum_probs=93.0
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEE---EecCceeEEEEcCCCCc------------hhHH--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITI---VSGKQRRLQFVECPNDI------------NGMI-- 133 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti---~~~~~~rl~fIDtPGdl------------~sml-- 133 (519)
..+...|+|+|++|||||||+|+|++......+....|.+.. +... ..+.++||||.. ...+
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-DGKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-TTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-CCEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 345679999999999999999999986411111111221111 1111 268899999952 1112
Q ss_pred --HHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEE
Q 010060 134 --DCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 134 --d~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~l 211 (519)
.....+|.+++|+|++.+......+++.++...++|.+ +|.||+|+..... .......+...+ ........++++
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~nK~D~~s~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 178 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVL-VLLTKADKLASGA-RKAQLNMVREAV-LAFNGDVQVETF 178 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGGSCHHH-HHHHHHHHHHHH-GGGCSCEEEEEC
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEecccCCCchh-HHHHHHHHHHHH-HhcCCCCceEEE
Confidence 22357899999999988766555567777777889855 5799999986322 111122232222 222234678999
Q ss_pred ecccCCcCChhHHHHHHHHHHhh
Q 010060 212 SGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
||+++ ..+..+...|...
T Consensus 179 Sal~~-----~~~~~l~~~l~~~ 196 (210)
T 1pui_A 179 SSLKK-----QGVDKLRQKLDTW 196 (210)
T ss_dssp BTTTT-----BSHHHHHHHHHHH
T ss_pred eecCC-----CCHHHHHHHHHHH
Confidence 99966 4555666555443
No 165
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.33 E-value=6.4e-12 Score=125.71 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=93.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc-cCccccccccEE--E-EecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT-KHNVPEVRGPIT--I-VSGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T-r~~v~~~~G~it--i-~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
.....|+|+|.+|+|||||+++|+...- .....++...+. + ..+....+.|+||||. +.. ....++.||++|+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 3458999999999999999999997531 111111111111 1 1223456779999995 333 2345788999999
Q ss_pred EEeCCCCCcccHH--HHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHHH---------HHHHhhhhhccCCceEEEE
Q 010060 145 LIDGSYGFEMETF--EFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTKQ---------RLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 145 VVDas~g~e~et~--e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~kk---------~Lk~~f~~e~~~~~kVf~l 211 (519)
|+|++.+...+.. .++..+... ++| +++|+||+|+............ .... +.......++|++
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA--MAKEIGAVKYLEC 309 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH--HHHHTTCSEEEEC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhcccccchhhhccccccccccHHHHHH--HHHHcCCcEEEEe
Confidence 9999864432222 234444433 677 5568999999754322111110 1111 1111233589999
Q ss_pred ecccCCcCChhHHHHHHHHHHhhcC
Q 010060 212 SGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
||++| .++..+...|.....
T Consensus 310 Sa~~~-----~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 310 SALTQ-----RGLKTVFDEAIRAVL 329 (332)
T ss_dssp CTTTC-----TTHHHHHHHHHHHHH
T ss_pred cCCCC-----cCHHHHHHHHHHHHh
Confidence 99977 677777777665543
No 166
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.33 E-value=1.4e-11 Score=116.73 Aligned_cols=156 Identities=18% Similarity=0.167 Sum_probs=90.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE--EE-ecCceeEEEEcCCCC--chhHH-HHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT--IV-SGKQRRLQFVECPND--INGMI-DCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it--i~-~~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLL 144 (519)
.....|+|+|.+|||||||+++|++..-... ..++...++ +. ......+.||||||. +..+. ..+..||++||
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 3458999999999999999999998632111 111111111 11 233568999999995 33333 35688999999
Q ss_pred EEeCCCCCcccH--HHHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHH---------HHHHHhhhhhccCCceEEEE
Q 010060 145 LIDGSYGFEMET--FEFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTK---------QRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 145 VVDas~g~e~et--~e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~k---------k~Lk~~f~~e~~~~~kVf~l 211 (519)
|+|++.....+. ..++..++. .+.| +++|+||+|+........++. ..... +. ......++|.+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~~~e~ 182 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-MA-KQIGAATYIEC 182 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-HH-HHHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhccchhhhhhhcccccCCCCHHHHHH-HH-HHcCCCEEEEe
Confidence 999985432222 123344433 3555 667899999975322111110 11111 11 11234689999
Q ss_pred ecccCCcCChhHHHHHHHHHHhh
Q 010060 212 SGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
||+++ ..++..+...|...
T Consensus 183 SAk~~----~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 183 SALQS----ENSVRDIFHVATLA 201 (205)
T ss_dssp CTTTC----HHHHHHHHHHHHHH
T ss_pred eeccC----CcCHHHHHHHHHHH
Confidence 99832 25677777666543
No 167
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.32 E-value=2.1e-12 Score=122.61 Aligned_cols=151 Identities=11% Similarity=0.170 Sum_probs=90.1
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHh-ccccCccccccc----cEEE-EecCceeEEEEcCCCC--chh-HHHHhhccCE
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIK-HYTKHNVPEVRG----PITI-VSGKQRRLQFVECPND--ING-MIDCAKIADL 141 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~-~~Tr~~v~~~~G----~iti-~~~~~~rl~fIDtPGd--l~s-mld~ak~ADl 141 (519)
....+.|+|+|.+|||||||+++|+. .+.. ......| ..++ .......+.||||||. +.. ....+..+|+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTC-EEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 34558999999999999999999554 3221 1111111 1111 1234568999999994 333 3446778999
Q ss_pred EEEEEeCCCCCcccHH-HHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCc
Q 010060 142 ALLLIDGSYGFEMETF-EFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGK 218 (519)
Q Consensus 142 VLLVVDas~g~e~et~-e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~ 218 (519)
+|+|+|++.+...+.. .++..+.. .++| +|+|+||+|+..... ..+.....+ . .+.++|.+||++|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-~~~~~~~~~-~------~~~~~~~~Sa~~~-- 159 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV-KAKSIVFHR-K------KNLQYYDISAKSN-- 159 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSCSS-CGGGCCHHH-H------HTCEEEECBGGGT--
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccccccc-cHHHHHHHH-H------cCCEEEEEeCCCC--
Confidence 9999999864322221 23333332 2677 556899999975321 111111111 1 1468999999987
Q ss_pred CChhHHHHHHHHHHhhcC
Q 010060 219 YSKREIRNLARFISVMKF 236 (519)
Q Consensus 219 Y~~~ei~~LlR~I~~~~~ 236 (519)
.++..+...|.....
T Consensus 160 ---~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 160 ---YNFEKPFLWLARKLI 174 (221)
T ss_dssp ---BTTTHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHH
Confidence 456666655555443
No 168
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.00 E-value=1.4e-13 Score=129.05 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=88.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc-CccccccccE--EE-EecCceeEEEEcCCCC--chhH-HHHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPEVRGPI--TI-VSGKQRRLQFVECPND--INGM-IDCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~~~G~i--ti-~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLL 144 (519)
..+..|+|+|.+|||||||+++|++..-. .........+ ++ ..+....+.||||||. +..+ ...+..+|++||
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 44589999999999999999999865211 1111110000 11 1223456779999995 3333 335688999999
Q ss_pred EEeCCCCCcccHH--HHHHHHHhc--CCCeEEEEEEccCCCCCHHHHHHHH---------HHHHHhhhhhccCCceEEEE
Q 010060 145 LIDGSYGFEMETF--EFLNLMQNH--GLPRVMGVLTHLDKFKDVKKLRKTK---------QRLKHRFWTEIYDGAKLFYL 211 (519)
Q Consensus 145 VVDas~g~e~et~--e~L~~L~~~--GiP~VI~VlNKlDl~~~~k~l~~~k---------k~Lk~~f~~e~~~~~kVf~l 211 (519)
|+|++.+...+.. .++..+... ++| +++|+||+|+........... ..+.. + .......++|++
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~~~~~~~v 184 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA-M-AKEIGAVKYLEC 184 (204)
Confidence 9999765332222 344444433 667 556899999975321111100 00100 0 111122378999
Q ss_pred ecccCCcCChhHHHHHHHHHH
Q 010060 212 SGLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 212 SAl~g~~Y~~~ei~~LlR~I~ 232 (519)
||++| .++..+...|.
T Consensus 185 SA~~g-----~gi~~l~~~l~ 200 (204)
T 3th5_A 185 SALTQ-----RGLKTVFDEAI 200 (204)
Confidence 99977 56666665554
No 169
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.32 E-value=1.1e-11 Score=128.08 Aligned_cols=151 Identities=18% Similarity=0.149 Sum_probs=91.0
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC--ccc----cc---------------------cccEEEE----------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP----EV---------------------RGPITIV---------- 113 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~----~~---------------------~G~iti~---------- 113 (519)
.+.+.+|+|+|+||+|||||+++|....... .+. ++ ...+.+.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 3456899999999999999999998653110 000 00 0011111
Q ss_pred ------------ecCceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 114 ------------SGKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 114 ------------~~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
...+..++||||||.-......+..||++|+|+|+..+.+.+... . ....+|.+ +|+||+|+.
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~i-vVlNK~Dl~ 230 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADI-VVVNKADGE 230 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSE-EEEECCCGG
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCE-EEEECCCCc
Confidence 113568999999995555556679999999999987554332211 0 01234655 589999997
Q ss_pred CCHHHHHHHHHHHHHhhhhhcc---C-CceEEEEecccCCcCChhHHHHHHHHHH
Q 010060 182 KDVKKLRKTKQRLKHRFWTEIY---D-GAKLFYLSGLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 182 ~~~k~l~~~kk~Lk~~f~~e~~---~-~~kVf~lSAl~g~~Y~~~ei~~LlR~I~ 232 (519)
. ........+.+...+....+ . ..++|++||++| .++..|...|.
T Consensus 231 ~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g-----~Gi~~L~~~i~ 279 (355)
T 3p32_A 231 H-HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEG-----RGLAELWDTVE 279 (355)
T ss_dssp G-HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGT-----BSHHHHHHHHH
T ss_pred C-hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCC-----CCHHHHHHHHH
Confidence 4 33334444445443311100 1 468999999987 45555554443
No 170
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.31 E-value=4.4e-11 Score=121.02 Aligned_cols=141 Identities=12% Similarity=0.108 Sum_probs=83.5
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc----cccccccEEEEe-cCceeEEEEcCCCC--c-----hh-HHHHhhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN----VPEVRGPITIVS-GKQRRLQFVECPND--I-----NG-MIDCAKIA 139 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~----v~~~~G~iti~~-~~~~rl~fIDtPGd--l-----~s-mld~ak~A 139 (519)
+...|+|+|.+|||||||+++|++...... ..+..-.+.... .....+.+|||||. + .. ....++.|
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 457899999999999999999988632111 011110111111 24678999999996 2 22 23345789
Q ss_pred CEEEEEEeCCCCCcccHH-HH---HHHHHh--cCCCeEEEEEEccCCCCCHHH--HH-HHHHHHHHhhhhhccC--CceE
Q 010060 140 DLALLLIDGSYGFEMETF-EF---LNLMQN--HGLPRVMGVLTHLDKFKDVKK--LR-KTKQRLKHRFWTEIYD--GAKL 208 (519)
Q Consensus 140 DlVLLVVDas~g~e~et~-e~---L~~L~~--~GiP~VI~VlNKlDl~~~~k~--l~-~~kk~Lk~~f~~e~~~--~~kV 208 (519)
|++|+|+|++.....+.. .+ +..+.. .++| +++|+||+|+...... +. .....+.+.. ..++ ..++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~--~~~g~~~~~~ 158 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLSETS--SEFGFPNLIG 158 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHHHH--HTTTCCSCEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHHHHH--HHcCCCCeEE
Confidence 999999999865433322 22 222222 2666 5568999999862211 11 1112222211 1222 4789
Q ss_pred EEEecccC
Q 010060 209 FYLSGLIH 216 (519)
Q Consensus 209 f~lSAl~g 216 (519)
|.+||+++
T Consensus 159 ~~tSa~~~ 166 (307)
T 3r7w_A 159 FPTSIWDE 166 (307)
T ss_dssp EECCTTSS
T ss_pred EEeeecCC
Confidence 99999853
No 171
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.30 E-value=3.4e-11 Score=124.42 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=82.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC--cc--cc--c---------------------cccEEE-----------E
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NV--PE--V---------------------RGPITI-----------V 113 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v--~~--~---------------------~G~iti-----------~ 113 (519)
.+..+|+|+|+||+|||||+|+|++..... .+ .. + .....+ .
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 456899999999999999999999742100 00 00 0 000000 0
Q ss_pred -----------ecCceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 114 -----------SGKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 114 -----------~~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
...+..++|+||||-...-......+|++++|+|++.+...+.. .. .....|.+ +|+||+|+..
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~i--~~--~il~~~~i-vVlNK~Dl~~ 226 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGI--KR--GIIEMADL-VAVTKSDGDL 226 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC----------------CCSCSE-EEECCCSGGG
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHHh--HH--HHHhcCCE-EEEeeecCCC
Confidence 12356789999999543444557899999999999866432211 11 11356755 5899999974
Q ss_pred CHHHHHHHHHHHHHhhhhhc----cCCceEEEEecccCCcCChhHHHHHHHHHH
Q 010060 183 DVKKLRKTKQRLKHRFWTEI----YDGAKLFYLSGLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 183 ~~k~l~~~kk~Lk~~f~~e~----~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~ 232 (519)
. .........+...+.... ....+++++||+++ .++..|...|.
T Consensus 227 ~-~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g-----~Gi~~L~~~I~ 274 (349)
T 2www_A 227 I-VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSG-----EGISEMWDKMK 274 (349)
T ss_dssp H-HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTC-----TTHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCC-----CCHHHHHHHHH
Confidence 2 222222233322221000 11468999999987 44444444443
No 172
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.28 E-value=2.8e-11 Score=116.86 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=89.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc-ccCcccccc---ccEEE-EecCceeEEEEcCCCC--chhHHH-HhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY-TKHNVPEVR---GPITI-VSGKQRRLQFVECPND--INGMID-CAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~-Tr~~v~~~~---G~iti-~~~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVV 146 (519)
..|+|||.+|||||||+++++... ......++. ...++ .......+.+|||+|. +.++.. ..+.||++|+|+
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~ 93 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVY 93 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEE
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEe
Confidence 589999999999999999998752 111111110 01111 1234567899999995 555443 578999999999
Q ss_pred eCCCCCcccH-HHHHHHHH---hcCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccCCcCCh
Q 010060 147 DGSYGFEMET-FEFLNLMQ---NHGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSK 221 (519)
Q Consensus 147 Das~g~e~et-~e~L~~L~---~~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~ 221 (519)
|.+..-.-+. ...+..+. ..++| +|+|.||+|+...... ..+. +.+.+.+ +.++|.+||++|
T Consensus 94 di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r~V~~~e~-~~~a~~~------~~~~~e~SAktg----- 160 (216)
T 4dkx_A 94 DITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQVSIEEG-ERKAKEL------NVMFIETSAKAG----- 160 (216)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCCSCHHHH-HHHHHHH------TCEEEEEBTTTT-----
T ss_pred ecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcCcccHHHH-hhHHHHh------CCeeEEEeCCCC-----
Confidence 9974321111 12233232 23455 6678999998642111 1122 2222222 467899999987
Q ss_pred hHHHHHHHHHHhhcC
Q 010060 222 REIRNLARFISVMKF 236 (519)
Q Consensus 222 ~ei~~LlR~I~~~~~ 236 (519)
.++.++...|+....
T Consensus 161 ~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 161 YNVKQLFRRVAAALP 175 (216)
T ss_dssp BSHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHH
Confidence 677777777776554
No 173
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.25 E-value=6.7e-11 Score=109.21 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=85.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc---ccCccccccccEEEE---------ecCceeEEEEcCCCC--chhHH-HHhhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY---TKHNVPEVRGPITIV---------SGKQRRLQFVECPND--INGMI-DCAKIA 139 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~---Tr~~v~~~~G~iti~---------~~~~~rl~fIDtPGd--l~sml-d~ak~A 139 (519)
..|+|+|++|||||||+++|++.. ......++ | +.+. ......+.++||||. +..+. ..+..+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~-g-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATV-G-IDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQR 80 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------C-S-EEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceec-c-EEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCC
Confidence 589999999999999999999842 11111111 1 1111 123567899999994 33322 235679
Q ss_pred CEEEEEEeCCCCCc-c-cHHHHHHHHHh--cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCc---eEEEEe
Q 010060 140 DLALLLIDGSYGFE-M-ETFEFLNLMQN--HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGA---KLFYLS 212 (519)
Q Consensus 140 DlVLLVVDas~g~e-~-et~e~L~~L~~--~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~---kVf~lS 212 (519)
|++++|+|.+.+.. . .....+..+.. .+.| +++|.||+|+... .........+...+... .+.. ++|.+|
T Consensus 81 ~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S 157 (184)
T 2zej_A 81 ALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDE-KQRKACMSKITKELLNK-RGFPAIRDYHFVN 157 (184)
T ss_dssp EEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCH-HHHHHHHHHHHHHTTTC-TTSCEEEEEEECC
T ss_pred cEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECCCcccc-hhhHHHHHHHHHHHHHh-cCCcchhheEEEe
Confidence 99999999976531 1 11233333332 3555 6668999999752 22222222222222211 1211 389999
Q ss_pred cccCCcCChhHHHHHHHHHHhhc
Q 010060 213 GLIHGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~I~~~~ 235 (519)
|+++. ..+..|...|....
T Consensus 158 a~~~~----~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 158 ATEES----DALAKLRKTIINES 176 (184)
T ss_dssp TTSCC----HHHHHHHHHHHHHH
T ss_pred cccCc----hhHHHHHHHHHHHH
Confidence 99772 36677776665443
No 174
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.5e-11 Score=113.44 Aligned_cols=121 Identities=14% Similarity=0.208 Sum_probs=70.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chh-----HHHHhhccCEEEE
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--ING-----MIDCAKIADLALL 144 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~s-----mld~ak~ADlVLL 144 (519)
...+.|+|+|++|||||||+++|++......+......++ .......+.||||||. +.. +...+..||++||
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~ 124 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF 124 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEE
Confidence 4567999999999999999999998742221111111111 1224568999999995 222 2233455999999
Q ss_pred EEeCC-CCCc--ccHHHHHHHHHh------cCCCeEEEEEEccCCCCCHHHHHHHHHHHH
Q 010060 145 LIDGS-YGFE--METFEFLNLMQN------HGLPRVMGVLTHLDKFKDVKKLRKTKQRLK 195 (519)
Q Consensus 145 VVDas-~g~e--~et~e~L~~L~~------~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk 195 (519)
|+|++ ..-. .....+..++.. .++| +++|+||+|+.... ...++.+.|.
T Consensus 125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-~~~~~~~~l~ 182 (193)
T 2ged_A 125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTAR-PPSKIKDALE 182 (193)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTCC-CHHHHHHHHH
T ss_pred EEECCCCchhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchHhcCCC-CHHHHHHHHH
Confidence 99998 2211 111122222221 3677 55689999998532 2334444443
No 175
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.23 E-value=5.7e-12 Score=129.89 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=84.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc--cC--ccccccc-----------------------------------------
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT--KH--NVPEVRG----------------------------------------- 108 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T--r~--~v~~~~G----------------------------------------- 108 (519)
.+.|+|+|.+|+|||||+|+|++..- +. .++...+
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 35899999999999999999998621 10 0000000
Q ss_pred --------c--EEEEecCceeEEEEcCCCCc---------------hhHH-HHh-hccCEEEEEEeCCCCCcccHH-HHH
Q 010060 109 --------P--ITIVSGKQRRLQFVECPNDI---------------NGMI-DCA-KIADLALLLIDGSYGFEMETF-EFL 160 (519)
Q Consensus 109 --------~--iti~~~~~~rl~fIDtPGdl---------------~sml-d~a-k~ADlVLLVVDas~g~e~et~-e~L 160 (519)
+ +.+.......++||||||.. ..++ ..+ ..++++|+|+|++.++..+.. .++
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 0 11112224689999999932 2232 334 456678888899877776655 477
Q ss_pred HHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 161 NLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 161 ~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
..+...|.|. |+|+||+|+......... .+....+..-.+..+++++||+++
T Consensus 191 ~~~~~~~~~~-i~V~NK~Dl~~~~~~~~~---~~~~~~~~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 191 KEVDPQGQRT-IGVITKLDLMDEGTDARD---VLENKLLPLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp HHHCTTCTTE-EEEEECGGGSCTTCCCHH---HHTTCSSCCTTCEEECCCCCHHHH
T ss_pred HHhCcCCCce-EEEeccccccCcchhHHH---HHhCCcccccCCceEEEeCCcccc
Confidence 7776678885 568999999854321111 121111110012357889999876
No 176
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.22 E-value=7.8e-11 Score=113.17 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=84.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc--Ccccccccc---EEE-EecCceeEEEEcCCCCch--h-HHH-HhhccCEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK--HNVPEVRGP---ITI-VSGKQRRLQFVECPNDIN--G-MID-CAKIADLA 142 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--~~v~~~~G~---iti-~~~~~~rl~fIDtPGdl~--s-mld-~ak~ADlV 142 (519)
....|+|||.+|||||||+++|++.... .....+... .++ +.+....+.++||+|.-. . +.. ....||++
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ 115 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 115 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEE
Confidence 3478999999999999999999964210 000111000 111 123345678999998532 2 222 24678999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHHh----cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 143 LLLIDGSYGFEMET-FEFLNLMQN----HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 143 LLVVDas~g~e~et-~e~L~~L~~----~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
|+|+|.+..-.-+. ..++..+.. .++| +|+|.||+|+........+....+...+ +.++|.+||++|
T Consensus 116 ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~r~v~~~e~~~~a~~~------~~~~~e~SAk~g- 187 (211)
T 2g3y_A 116 LIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRCREVSVSEGRACAVVF------DCKFIETSAAVQ- 187 (211)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCGGGCCSCHHHHHHHHHHH------TCEEEECBTTTT-
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHhcCceEeHHHHHHHHHHc------CCEEEEEeCCCC-
Confidence 99999874211111 123333332 3677 5668999999632111011111111111 468999999987
Q ss_pred cCChhHHHHHHHHHHhh
Q 010060 218 KYSKREIRNLARFISVM 234 (519)
Q Consensus 218 ~Y~~~ei~~LlR~I~~~ 234 (519)
.++..+...|...
T Consensus 188 ----~~v~elf~~l~~~ 200 (211)
T 2g3y_A 188 ----HNVKELFEGIVRQ 200 (211)
T ss_dssp ----BSHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHH
Confidence 5666666555543
No 177
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.22 E-value=3.5e-11 Score=131.60 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=81.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC-cccccc--ccE-EEEecC-------------------------------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVPEVR--GPI-TIVSGK------------------------------- 116 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~~~~--G~i-ti~~~~------------------------------- 116 (519)
...+.|+|+|.+|+|||||+|+|++..-.. .+.... ..+ .+....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 345799999999999999999999863110 000000 000 011000
Q ss_pred -------c---eeEEEEcCCCCc-------------hh-HHHHhhccCEEEEEEeCCC-CCcccHHHHHHHHHhcCCCeE
Q 010060 117 -------Q---RRLQFVECPNDI-------------NG-MIDCAKIADLALLLIDGSY-GFEMETFEFLNLMQNHGLPRV 171 (519)
Q Consensus 117 -------~---~rl~fIDtPGdl-------------~s-mld~ak~ADlVLLVVDas~-g~e~et~e~L~~L~~~GiP~V 171 (519)
. .+++||||||.. .. +...+..||++|+|+|++. ++..+...++..+...+.| +
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-v 221 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-I 221 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-E
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-E
Confidence 0 479999999942 22 3446788999999999986 4666677888888777777 5
Q ss_pred EEEEEccCCCCCHHHHHHHHHHHH
Q 010060 172 MGVLTHLDKFKDVKKLRKTKQRLK 195 (519)
Q Consensus 172 I~VlNKlDl~~~~k~l~~~kk~Lk 195 (519)
++|+||+|++. ...+..+...+.
T Consensus 222 ilVlNK~Dl~~-~~el~~~~~~l~ 244 (550)
T 2qpt_A 222 RVVLNKADMVE-TQQLMRVYGALM 244 (550)
T ss_dssp EEEEECGGGSC-HHHHHHHHHHHH
T ss_pred EEEEECCCccC-HHHHHHHHHHhh
Confidence 66999999985 345555555554
No 178
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.22 E-value=3.8e-11 Score=123.49 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=85.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc--Ccc--cc-------------------------ccccEEEE---------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK--HNV--PE-------------------------VRGPITIV--------- 113 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--~~v--~~-------------------------~~G~iti~--------- 113 (519)
....+|+++|++|+|||||++.|++.... ..+ .. +.+.++..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 45689999999999999999999864210 000 00 01111100
Q ss_pred -----------ecCceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 114 -----------SGKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 114 -----------~~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
...+..++||||||...........||++|+|+|++.+...+.... . ..++|.+ +|+||+|+..
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~~~~~~l~~-~---~~~~p~i-vv~NK~Dl~~ 208 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKK-G---LMEVADL-IVINKDDGDN 208 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCH-H---HHHHCSE-EEECCCCTTC
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHHHHHhCCEEEEEEeCCccHHHHHHHH-h---hhcccCE-EEEECCCCCC
Confidence 0235689999999965443345689999999999975532221110 1 1245755 5899999975
Q ss_pred CHHHHHHHHHHHHHhhhhhcc---C--CceEEEEecccCCcCChhHHHHHHHHHH
Q 010060 183 DVKKLRKTKQRLKHRFWTEIY---D--GAKLFYLSGLIHGKYSKREIRNLARFIS 232 (519)
Q Consensus 183 ~~k~l~~~kk~Lk~~f~~e~~---~--~~kVf~lSAl~g~~Y~~~ei~~LlR~I~ 232 (519)
. ..+......++..+.. +. . ..+++++||++| .++..|...|.
T Consensus 209 ~-~~~~~~~~~l~~~l~~-~~~~~~~~~~~vi~iSA~~g-----~gi~~L~~~l~ 256 (341)
T 2p67_A 209 H-TNVAIARHMYESALHI-LRRKYDEWQPRVLTCSALEK-----RGIDEIWHAII 256 (341)
T ss_dssp H-HHHHHHHHHHHHHHHH-SCCSBTTBCCEEEECBGGGT-----BSHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHh-ccccccCCCCcEEEeeCCCC-----CCHHHHHHHHH
Confidence 2 2333333344432211 11 1 357899999987 34444444443
No 179
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.22 E-value=3.5e-11 Score=130.57 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=87.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCc-cccccccEE-E----------E-ecCceeEEEEcCCCC--chhHH-HH
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEVRGPIT-I----------V-SGKQRRLQFVECPND--INGMI-DC 135 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~~G~it-i----------~-~~~~~rl~fIDtPGd--l~sml-d~ 135 (519)
.....|+++|.+|||||||+++|++..-... ..++.-.+. . . ......+.++||||. +..+. ..
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 3458999999999999999999998631111 011100011 0 0 122578999999994 33332 34
Q ss_pred hhccCEEEEEEeCCCCCcccHHHHHHHHHhcC--CCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 136 AKIADLALLLIDGSYGFEMETFEFLNLMQNHG--LPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 136 ak~ADlVLLVVDas~g~e~et~e~L~~L~~~G--iP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
+..+|++|+|+|++.. .....++..+...+ .| +|+|+||+|+........ +.++..+. . -+.++|++||
T Consensus 119 l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v~~---~~~~~~~~-~--~~~~~~~vSA 189 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNIEQ---KKINERFP-A--IENRFHRISC 189 (535)
T ss_dssp HHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCCCH---HHHHHHCG-G--GTTCEEECCC
T ss_pred ccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC-EEEEEECCCcccccccCH---HHHHHHHH-h--cCCceEEEec
Confidence 6789999999999753 33345666666544 77 556899999975322111 11222121 1 2457999999
Q ss_pred ccCCcCChhHHHHHHHHHHhhcC
Q 010060 214 LIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
++| .++..|...|.....
T Consensus 190 ~~g-----~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 190 KNG-----DGVESIAKSLKSAVL 207 (535)
T ss_dssp ----------CTTHHHHHHHHHT
T ss_pred Ccc-----cCHHHHHHHHHHHHh
Confidence 977 556666665555443
No 180
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.21 E-value=6.9e-11 Score=110.51 Aligned_cols=149 Identities=16% Similarity=0.180 Sum_probs=82.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc--Ccccccccc-E--EE-EecCceeEEEEcCCCCch---hHHH-HhhccCEE
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK--HNVPEVRGP-I--TI-VSGKQRRLQFVECPNDIN---GMID-CAKIADLA 142 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--~~v~~~~G~-i--ti-~~~~~~rl~fIDtPGdl~---smld-~ak~ADlV 142 (519)
+...|+|||.+|||||||+++|++.... .....+... + ++ +.+....+.++||+|.-. .+.. ....||++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 3478999999999999999999964210 000001001 1 11 123344678899988421 2222 34679999
Q ss_pred EEEEeCCCCCcccH-HHHHHHHH----hcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 143 LLLIDGSYGFEMET-FEFLNLMQ----NHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 143 LLVVDas~g~e~et-~e~L~~L~----~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
|+|+|.+..-.-+. .+++..+. ..++| +|+|.||+|+.............+... .+.++|.+||++|
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~r~v~~~~~~~~a~~------~~~~~~e~SA~~g- 156 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRXREVSVSEGRAXAVV------FDXKFIETSAAVQ- 156 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECTTCGGGCCSCHHHHHHHHHH------TTCEEEECBTTTT-
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe-EEEEEechhhhccccccHHHHHHHHHH------hCCceEEeccccC-
Confidence 99999974321111 12222222 23677 566899999864211101111111111 2458899999987
Q ss_pred cCChhHHHHHHHHHHh
Q 010060 218 KYSKREIRNLARFISV 233 (519)
Q Consensus 218 ~Y~~~ei~~LlR~I~~ 233 (519)
.++..+...|..
T Consensus 157 ----~~v~~lf~~l~~ 168 (192)
T 2cjw_A 157 ----HNVKELFEGIVR 168 (192)
T ss_dssp ----BSHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHH
Confidence 456665554443
No 181
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.20 E-value=4.7e-11 Score=125.68 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=46.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc--C----ccccccccEEEE--------------------ec-CceeEEEEcCCC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK--H----NVPEVRGPITIV--------------------SG-KQRRLQFVECPN 127 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr--~----~v~~~~G~iti~--------------------~~-~~~rl~fIDtPG 127 (519)
+.|+|||+||||||||+|+|++.... . ++....|.+++. .. ....+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 36899999999999999999986311 0 000011211110 00 125799999999
Q ss_pred Cch----------hHHHHhhccCEEEEEEeCCCC
Q 010060 128 DIN----------GMIDCAKIADLALLLIDGSYG 151 (519)
Q Consensus 128 dl~----------smld~ak~ADlVLLVVDas~g 151 (519)
... .++..++.||++|+|+|++.+
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 531 133457899999999999865
No 182
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.20 E-value=1.8e-11 Score=138.22 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=90.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc---------ccCcccc------------------------------------c--
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY---------TKHNVPE------------------------------------V-- 106 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~---------Tr~~v~~------------------------------------~-- 106 (519)
.+.|+|+|.+++|||||+|+|++.. |+.++.. .
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 3589999999999999999999852 2211000 0
Q ss_pred ------cccE--EEEecCceeEEEEcCCCCch---------------hH-HHHh-hccCEEEEEEeCCCCCcccHH-HHH
Q 010060 107 ------RGPI--TIVSGKQRRLQFVECPNDIN---------------GM-IDCA-KIADLALLLIDGSYGFEMETF-EFL 160 (519)
Q Consensus 107 ------~G~i--ti~~~~~~rl~fIDtPGdl~---------------sm-ld~a-k~ADlVLLVVDas~g~e~et~-e~L 160 (519)
..++ .+.......++||||||-.. .+ ...+ ..+|++|+|+|++.++..+.. .++
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll 210 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 210 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHH
Confidence 0011 22233455799999999422 12 2233 578999999999988877766 788
Q ss_pred HHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCC
Q 010060 161 NLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHG 217 (519)
Q Consensus 161 ~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~ 217 (519)
..+...|.|.+ +|+||+|++........+ +...+.....++.+++++||++|.
T Consensus 211 ~~L~~~g~pvI-lVlNKiDlv~~~~~~~~i---l~~~~~~l~lg~~~VV~iSA~~G~ 263 (772)
T 3zvr_A 211 KEVDPQGQRTI-GVITKLDLMDEGTDARDV---LENKLLPLRRGYIGVVNRSQKDID 263 (772)
T ss_dssp HHHCTTCSSEE-EEEECTTSSCTTCCSHHH---HTTCSSCCSSCEEECCCCCCEESS
T ss_pred HHHHhcCCCEE-EEEeCcccCCcchhhHHH---HHHHhhhhhccCCceEEecccccc
Confidence 88888888855 689999998643222111 111111111245688999999874
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.19 E-value=1.7e-10 Score=114.12 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=72.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc---cCccccccccEEE-EecCceeEEEEcCCCCch------hHHHHh-----
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT---KHNVPEVRGPITI-VSGKQRRLQFVECPNDIN------GMIDCA----- 136 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T---r~~v~~~~G~iti-~~~~~~rl~fIDtPGdl~------smld~a----- 136 (519)
..++.|+|+|.+|+|||||+|+|++... ...........++ .......++||||||... .++..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 3458999999999999999999998631 1111111111112 234567899999999521 222222
Q ss_pred -hccCEEEEEEeCCC-CCcccHHHHHHHHHhc-CC---CeEEEEEEccCCCCC
Q 010060 137 -KIADLALLLIDGSY-GFEMETFEFLNLMQNH-GL---PRVMGVLTHLDKFKD 183 (519)
Q Consensus 137 -k~ADlVLLVVDas~-g~e~et~e~L~~L~~~-Gi---P~VI~VlNKlDl~~~ 183 (519)
..+|++|||+|++. .+.....+++..+... |. ..+|+|+||+|+..+
T Consensus 117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 36999999988753 4555555666666542 42 246679999999753
No 184
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.18 E-value=3.5e-11 Score=125.96 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=69.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccc----c-EEEEecCceeEEEEcCCCC----------chhHHHHhhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRG----P-ITIVSGKQRRLQFVECPND----------INGMIDCAKI 138 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G----~-iti~~~~~~rl~fIDtPGd----------l~smld~ak~ 138 (519)
-..|+|||+||||||||+|+|++... .+....+ + .-++.....+++|+||||- .+.++..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~--~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTES--EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCC--CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 36899999999999999999998631 1111111 1 1144556789999999983 2347888999
Q ss_pred cCEEEEEEeCCCCCcccHHHHHHHHHhc-----CCCeEEEEEEccCC
Q 010060 139 ADLALLLIDGSYGFEMETFEFLNLMQNH-----GLPRVMGVLTHLDK 180 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~e~L~~L~~~-----GiP~VI~VlNKlDl 180 (519)
||++|+|+|++.++.... .+...|... ..|.+ +|+||.|.
T Consensus 150 ad~il~vvD~~~p~~~~~-~i~~EL~~~~~~l~~k~~~-i~~nK~d~ 194 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQ-IIEKELEGVGIRLNKTPPD-ILIKKKEK 194 (376)
T ss_dssp CSEEEEEEETTSHHHHHH-HHHHHHHHTTEEETCCCCC-EEEEECSS
T ss_pred cCccccccccCccHHHHH-HHHHHHHHhhHhhccCChh-hhhhHhhh
Confidence 999999999986543221 122223332 34555 47999996
No 185
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.17 E-value=3.1e-10 Score=111.89 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=71.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC--cc-c-cccccEEEEecCceeEEEEcCCCC--ch----hHHHHhh----
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NV-P-EVRGPITIVSGKQRRLQFVECPND--IN----GMIDCAK---- 137 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v-~-~~~G~iti~~~~~~rl~fIDtPGd--l~----smld~ak---- 137 (519)
..++.|+|+|++|+|||||+|+|++..... .. . +.......+...+..++||||||. +. ..+..+.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 356899999999999999999999864211 10 0 111111223445679999999995 21 1233222
Q ss_pred --ccCEEEEEEeCCC-CCcccHHHHHHHHHhc-C---CCeEEEEEEccCCCC
Q 010060 138 --IADLALLLIDGSY-GFEMETFEFLNLMQNH-G---LPRVMGVLTHLDKFK 182 (519)
Q Consensus 138 --~ADlVLLVVDas~-g~e~et~e~L~~L~~~-G---iP~VI~VlNKlDl~~ 182 (519)
.+|++|||+|.+. .+......++..+... + ...+++|+||+|+..
T Consensus 114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 7899999987753 4555555666666542 2 124667999999963
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.13 E-value=6.5e-11 Score=122.07 Aligned_cols=94 Identities=12% Similarity=0.112 Sum_probs=57.8
Q ss_pred CceeEEEEcCCCCc---------------hh-HHHHhhccCEEEEEEeCCC-CC-cccHHHHHHHHHhcCCCeEEEEEEc
Q 010060 116 KQRRLQFVECPNDI---------------NG-MIDCAKIADLALLLIDGSY-GF-EMETFEFLNLMQNHGLPRVMGVLTH 177 (519)
Q Consensus 116 ~~~rl~fIDtPGdl---------------~s-mld~ak~ADlVLLVVDas~-g~-e~et~e~L~~L~~~GiP~VI~VlNK 177 (519)
....++||||||.. .. +...+..+|++|||+|+.. .. ..+...++..+...|.| +|+|+||
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK 212 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTK 212 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEEC
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeC
Confidence 34579999999932 22 4456789999999998742 22 23334566666666788 4568999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 178 LDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 178 lDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
+|++.......+. +.. + ....+.+++.+|+.++
T Consensus 213 ~Dl~~~~~~~~~~---~~~-~--~~~~~~~~~~v~~~s~ 245 (360)
T 3t34_A 213 IDLMDKGTDAVEI---LEG-R--SFKLKYPWVGVVNRSQ 245 (360)
T ss_dssp GGGCCTTCCSHHH---HTT-S--SSCCSSCCEEECCCCH
T ss_pred CccCCCcccHHHH---HcC-c--cccccCCeEEEEECCh
Confidence 9998643221111 211 1 1223456778887754
No 187
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.12 E-value=7.2e-10 Score=114.01 Aligned_cols=139 Identities=19% Similarity=0.189 Sum_probs=79.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc--Ccc-----------------------ccc--cccEEEE-----------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK--HNV-----------------------PEV--RGPITIV----------- 113 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--~~v-----------------------~~~--~G~iti~----------- 113 (519)
.+..+|+|+|+||+|||||++.|++.... ..+ ... .....+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 55679999999999999999999964210 000 000 0001111
Q ss_pred -----------ecCceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 114 -----------SGKQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 114 -----------~~~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
...+..++|+||||-...-......+|++++|+|+..+.+.+. +...+ ..++.++ |+||+|+..
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~iv-vlNK~Dl~~ 207 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMI-AVNKADDGD 207 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC--------CCTTH--HHHCSEE-EEECCSTTC
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEE-EEEchhccC
Confidence 1135689999999965444455689999999999864422110 00000 1235454 689999865
Q ss_pred CHHHHHHHHHHHHHhhhhhccC-----CceEEEEecccC
Q 010060 183 DVKKLRKTKQRLKHRFWTEIYD-----GAKLFYLSGLIH 216 (519)
Q Consensus 183 ~~k~l~~~kk~Lk~~f~~e~~~-----~~kVf~lSAl~g 216 (519)
.........+.+...+. .+.+ ..+++++||+++
T Consensus 208 ~~~~s~~~~~~l~~a~~-l~~~~~~~~~~~vl~~Sal~g 245 (337)
T 2qm8_A 208 GERRASAAASEYRAALH-ILTPPSATWTPPVVTISGLHG 245 (337)
T ss_dssp CHHHHHHHHHHHHHHHT-TBCCSBTTBCCCEEEEBTTTT
T ss_pred chhHHHHHHHHHHHHHH-hccccccCCCCCEEEEeCCCC
Confidence 33322333333332221 0111 368999999977
No 188
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.10 E-value=7.1e-10 Score=103.56 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=78.2
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCc-ccc-----ccccEEEEecCceeEEEEcCCCC--chhH-HHHhhccCEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPE-----VRGPITIVSGKQRRLQFVECPND--INGM-IDCAKIADLALL 144 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~-----~~G~iti~~~~~~rl~fIDtPGd--l~sm-ld~ak~ADlVLL 144 (519)
.+.|+|+|++|||||||+++|++...... ... ..+.+. +.+....+.++||||. +..+ ......+|++|+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ-VDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEE-ETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE-ECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 47899999999999999999998631110 000 011111 1223356788999995 2222 234568999999
Q ss_pred EEeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHH-HHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKK-LRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~-l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
|+|++.....+. ..++..+.. .+.| +++|+||+|+...... ..... .+.. ..+..++.+||+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~~~~a~-~l~~------~~~~~~~d~Sal~~ 152 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPTDEAR-AFAE------KNNLSFIETSALDS 152 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCHHHHH-HHHH------HTTCEEEECCTTTC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCcCHHHHH-HHHH------HcCCeEEEEeCCCC
Confidence 999975432221 123333332 2444 6678999998632111 11111 1111 13467888999976
No 189
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.10 E-value=3.7e-10 Score=110.94 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=48.3
Q ss_pred ccCEEEEEEeCCCC--CcccH-HHHHHHH----HhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEE
Q 010060 138 IADLALLLIDGSYG--FEMET-FEFLNLM----QNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFY 210 (519)
Q Consensus 138 ~ADlVLLVVDas~g--~e~et-~e~L~~L----~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~ 210 (519)
.||++|||+|++.. ..-+. ...+..+ ...++| +|+|+||+|+... ..+.+..+ + . .. ..+.++|.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~-~~v~~~~~-~---~-~~-~~~~~~~e 233 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGVE-RYIRDAHT-F---A-LS-KKNLQVVE 233 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBCH-HHHHHHHH-H---H-HT-SSSCCEEE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCC-EEEEEEccccccc-HHHHHHHH-H---H-Hh-cCCCeEEE
Confidence 59999999999764 22211 1222222 234677 5568999999743 22222211 1 1 11 12568999
Q ss_pred EecccCCcCChhHHHHHHHHHHh
Q 010060 211 LSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 211 lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
+||++| .++..+...|..
T Consensus 234 ~SAk~g-----~gv~elf~~l~~ 251 (255)
T 3c5h_A 234 TSARSN-----VNVDLAFSTLVQ 251 (255)
T ss_dssp CBTTTT-----BSHHHHHHHHHH
T ss_pred EECCCC-----CCHHHHHHHHHH
Confidence 999977 566767666554
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.08 E-value=1.1e-09 Score=116.00 Aligned_cols=148 Identities=16% Similarity=0.228 Sum_probs=90.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc---CccccccccEEEEecC-ceeEEEEcCCCCch----------hHHHHhhccC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK---HNVPEVRGPITIVSGK-QRRLQFVECPNDIN----------GMIDCAKIAD 140 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr---~~v~~~~G~iti~~~~-~~rl~fIDtPGdl~----------smld~ak~AD 140 (519)
..|+|||++|||||||+++|++.... ....+....+-++... ...++++|+||.+. ..+..+..+|
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 47899999999999999999987311 0111111111123323 36899999999521 2456677899
Q ss_pred EEEEEEeCC-CCCccc---HHHHHHHHHh-cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEeccc
Q 010060 141 LALLLIDGS-YGFEME---TFEFLNLMQN-HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLI 215 (519)
Q Consensus 141 lVLLVVDas-~g~e~e---t~e~L~~L~~-~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~ 215 (519)
.+|+|+|++ ..+... ..+++.+..+ ...|.++ |+||+|+... ..+..+.+.+.. .+.++|++||++
T Consensus 238 ~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~IL-VlNKlDl~~~-~~~~~l~~~l~~-------~g~~vi~iSA~~ 308 (416)
T 1udx_A 238 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV-ALNKVDLLEE-EAVKALADALAR-------EGLAVLPVSALT 308 (416)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEE-EEECCTTSCH-HHHHHHHHHHHT-------TTSCEEECCTTT
T ss_pred hhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEE-EEECCChhhH-HHHHHHHHHHHh-------cCCeEEEEECCC
Confidence 999999997 211110 1123322211 3567665 7899999853 333333332211 256899999997
Q ss_pred CCcCChhHHHHHHHHHHhhcC
Q 010060 216 HGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 216 g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
+ .++..|+..|.....
T Consensus 309 g-----~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 309 G-----AGLPALKEALHALVR 324 (416)
T ss_dssp C-----TTHHHHHHHHHHHHH
T ss_pred c-----cCHHHHHHHHHHHHH
Confidence 6 677777777665543
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.06 E-value=1.3e-10 Score=109.90 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=86.3
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC-ccc----cc----------cccEEE--Ee------------------cCce
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH-NVP----EV----------RGPITI--VS------------------GKQR 118 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-~v~----~~----------~G~iti--~~------------------~~~~ 118 (519)
.++|+|+|++|+|||||+++|+...... .+. .+ ...+++ .. ....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 4799999999999999999999863110 110 00 001111 11 1235
Q ss_pred eEEEEcCCCCch--hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCH-HHHHHHHHHHH
Q 010060 119 RLQFVECPNDIN--GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDV-KKLRKTKQRLK 195 (519)
Q Consensus 119 rl~fIDtPGdl~--smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~-k~l~~~kk~Lk 195 (519)
.+.+|||+|.+. ...+ ..++.+++|+|++.+... ...++ ...+.|.+ +|+||+|+.... ..+.++.+.++
T Consensus 110 d~iiidt~G~~~~~~~~~--~~~~~~i~vvd~~~~~~~-~~~~~---~~~~~~~i-iv~NK~Dl~~~~~~~~~~~~~~~~ 182 (221)
T 2wsm_A 110 DLLLIENVGNLICPVDFD--LGENYRVVMVSVTEGDDV-VEKHP---EIFRVADL-IVINKVALAEAVGADVEKMKADAK 182 (221)
T ss_dssp SEEEEEEEEBSSGGGGCC--CSCSEEEEEEEGGGCTTH-HHHCH---HHHHTCSE-EEEECGGGHHHHTCCHHHHHHHHH
T ss_pred CEEEEeCCCCCCCCchhc--cccCcEEEEEeCCCcchh-hhhhh---hhhhcCCE-EEEecccCCcchhhHHHHHHHHHH
Confidence 688999888311 1111 247889999999876422 11222 22367765 489999986321 12334444333
Q ss_pred HhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhc
Q 010060 196 HRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 196 ~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~ 235 (519)
. .....++|++||++| .++..+...|....
T Consensus 183 ~-----~~~~~~i~~~Sa~~g-----~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 183 L-----INPRAKIIEMDLKTG-----KGFEEWIDFLRGIL 212 (221)
T ss_dssp H-----HCTTSEEEECBTTTT-----BTHHHHHHHHHHHH
T ss_pred H-----hCCCCeEEEeecCCC-----CCHHHHHHHHHHHH
Confidence 2 234678999999977 56777777666543
No 192
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=4.3e-10 Score=116.68 Aligned_cols=154 Identities=19% Similarity=0.322 Sum_probs=80.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc--cCccc----cccccEEEE------e--cCceeEEEEcCCCC---------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT--KHNVP----EVRGPITIV------S--GKQRRLQFVECPND--------- 128 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T--r~~v~----~~~G~iti~------~--~~~~rl~fIDtPGd--------- 128 (519)
+.++.|+|+|++|+|||||+|+|++... ...+. .+...+++. . +....++++||||.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4457899999999999999999987521 11000 000111111 1 11347899999984
Q ss_pred chhHHH-----------Hhhc----------cCEEEEEEeC-CCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHH
Q 010060 129 INGMID-----------CAKI----------ADLALLLIDG-SYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKK 186 (519)
Q Consensus 129 l~smld-----------~ak~----------ADlVLLVVDa-s~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~ 186 (519)
+..+.+ .+.. +|++|++|++ ..++.....+++..+. .++| +|+|+||+|+... ..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~p-iIlV~NK~Dl~~~-~e 191 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKADTLTL-KE 191 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SC-EEEEEECCSSSCH-HH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCC-EEEEEECCCCCCH-HH
Confidence 222222 1221 2578888876 5667766667776663 5677 6679999999853 34
Q ss_pred HHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHh
Q 010060 187 LRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 187 l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
+...++.+...+. ..+.++|++||+++. ..+.+..+.+.|..
T Consensus 192 v~~~k~~i~~~~~---~~~i~~~~~Sa~~~~--~~e~~~~l~~~i~~ 233 (361)
T 2qag_A 192 RERLKKRILDEIE---EHNIKIYHLPDAESD--EDEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHHTT---CC-CCSCCCC-----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HCCCCEEeCCCcCCC--cchhHHHHHHHHHh
Confidence 4444444444331 125688999998873 23334555555543
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.05 E-value=2.9e-09 Score=103.41 Aligned_cols=109 Identities=13% Similarity=0.245 Sum_probs=64.8
Q ss_pred eeEEEEcCCCCchh---------HHHHhhccCEEEEEEeCCCCCcccHHH-----HHHHHHhcCCCeEEEEEEccCCCCC
Q 010060 118 RRLQFVECPNDING---------MIDCAKIADLALLLIDGSYGFEMETFE-----FLNLMQNHGLPRVMGVLTHLDKFKD 183 (519)
Q Consensus 118 ~rl~fIDtPGdl~s---------mld~ak~ADlVLLVVDas~g~e~et~e-----~L~~L~~~GiP~VI~VlNKlDl~~~ 183 (519)
..++||||||.... ++..+.. +++|+|+|++.......+. .+......++|.+ +|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTI-PALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEE-EEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeE-EEEeccccccc
Confidence 47999999996432 2234555 8999999997655443331 1122333478855 68999999753
Q ss_pred HHHHHHHHHHHH------Hhh-----------------hhhccCCceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 184 VKKLRKTKQRLK------HRF-----------------WTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 184 ~k~l~~~kk~Lk------~~f-----------------~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
. ...++.+.++ ..+ ..++....+++++||+++ .++..|...|...
T Consensus 187 ~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~-----~gi~~l~~~i~~~ 254 (262)
T 1yrb_A 187 E-EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR-----EGFEDLETLAYEH 254 (262)
T ss_dssp H-HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC-----TTHHHHHHHHHHH
T ss_pred c-cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCc-----ccHHHHHHHHHHH
Confidence 2 2222222211 111 123334458999999977 5677777666543
No 194
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.96 E-value=5.3e-09 Score=97.40 Aligned_cols=147 Identities=19% Similarity=0.154 Sum_probs=84.2
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCc-cccc-----cccEEEEecCceeEEEEcCCCC--chh-HHHHhhccCEEEE
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHN-VPEV-----RGPITIVSGKQRRLQFVECPND--ING-MIDCAKIADLALL 144 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~-v~~~-----~G~iti~~~~~~rl~fIDtPGd--l~s-mld~ak~ADlVLL 144 (519)
...|+|+|++|||||||+++|++...... ..++ .+.+. +.+....+.++|+||. +.. +......+|.+++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ-VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEE-ETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEE-ECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 47899999999999999999998642111 0100 11111 1222345677999984 333 3345577899999
Q ss_pred EEeCCCCCcccH-HHHHHHHHh---cCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCC
Q 010060 145 LIDGSYGFEMET-FEFLNLMQN---HGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYS 220 (519)
Q Consensus 145 VVDas~g~e~et-~e~L~~L~~---~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~ 220 (519)
|+|.+.....+. ..++..+.. ... .+++|+||+|+.............+.. .....++.+||+++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~i~~v~nK~Dl~~~~~~~~~~a~~l~~------~~~~~~ld~Sald~---- 176 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNI-VIMLVGNKSDLRHLRAVPTDEARAFAE------KNGLSFIETSALDS---- 176 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEECCTTTC----
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEeCCCC----
Confidence 999875322111 123333332 234 466799999986321111111111211 13467888999976
Q ss_pred hhHHHHHHHHHHh
Q 010060 221 KREIRNLARFISV 233 (519)
Q Consensus 221 ~~ei~~LlR~I~~ 233 (519)
..+..+...|..
T Consensus 177 -~~v~~l~~~l~~ 188 (191)
T 1oix_A 177 -TNVEAAFQTILT 188 (191)
T ss_dssp -TTHHHHHHHHHH
T ss_pred -CCHHHHHHHHHH
Confidence 556666655543
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=9.8e-09 Score=108.80 Aligned_cols=141 Identities=19% Similarity=0.290 Sum_probs=81.3
Q ss_pred CCCCCeEEEEECCCCCChHHHHHHHHhcccc-Ccccc----cccc-----EEEE---ecCceeEEEEcCCCCc-------
Q 010060 70 GEPPPFVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPE----VRGP-----ITIV---SGKQRRLQFVECPNDI------- 129 (519)
Q Consensus 70 ~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~----~~G~-----iti~---~~~~~rl~fIDtPGdl------- 129 (519)
..+-.+.|+|||++|+|||||+|.|++.... ..... .... +.++ ......++++|+||.-
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 3566688999999999999999999986421 00000 0000 1111 1123478999999831
Q ss_pred --hhHHHH-------------------h--hccCEEEEEEeCC-CCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH
Q 010060 130 --NGMIDC-------------------A--KIADLALLLIDGS-YGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK 185 (519)
Q Consensus 130 --~smld~-------------------a--k~ADlVLLVVDas-~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k 185 (519)
..+++. + ..++++|++++++ .++.+...+++..|.. ++| +|+|+||+|+... .
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~-iIlVinK~Dll~~-~ 183 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADTLTP-E 183 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE-EEEEEESTTSSCH-H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCc-EEEEEEcccCccH-H
Confidence 112110 1 2245677777776 6888877778887764 666 6679999999853 3
Q ss_pred HHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 186 KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 186 ~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
.+...++.+...+.. .+.++|.+|+.++
T Consensus 184 ev~~~k~~i~~~~~~---~~i~~~~~sa~~~ 211 (418)
T 2qag_C 184 ECQQFKKQIMKEIQE---HKIKIYEFPETDD 211 (418)
T ss_dssp HHHHHHHHHHHHHHH---HTCCCCCCC----
T ss_pred HHHHHHHHHHHHHHH---cCCeEEeCCCCCC
Confidence 445545555544422 2567888887654
No 196
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.88 E-value=3e-08 Score=102.01 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=89.2
Q ss_pred EEEECCCCCChHHHHHHHHhccccCc----cccccccEEEEecCceeEEEEcCCCC--chh----HHHHhhccCEEEEEE
Q 010060 77 VVVQGPPQVGKSLLIKSLIKHYTKHN----VPEVRGPITIVSGKQRRLQFVECPND--ING----MIDCAKIADLALLLI 146 (519)
Q Consensus 77 VaVVG~pnvGKSTLIn~Ll~~~Tr~~----v~~~~G~iti~~~~~~rl~fIDtPGd--l~s----mld~ak~ADlVLLVV 146 (519)
|+++|..|||||||++.+...+.... ..++.-.+..+ .....+.+|||+|. +.. .-...+.|+++|+|+
T Consensus 2 IvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~ 80 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI 80 (331)
T ss_dssp EEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence 78999999999999998876542211 11111111111 33468999999995 432 134678999999999
Q ss_pred eCCCCCcccHH---HHHHHHH--hcCCCeEEEEEEccCCCCCHHH---HHHHHHHHHHhhhhhcc--CCceEEEEecccC
Q 010060 147 DGSYGFEMETF---EFLNLMQ--NHGLPRVMGVLTHLDKFKDVKK---LRKTKQRLKHRFWTEIY--DGAKLFYLSGLIH 216 (519)
Q Consensus 147 Das~g~e~et~---e~L~~L~--~~GiP~VI~VlNKlDl~~~~k~---l~~~kk~Lk~~f~~e~~--~~~kVf~lSAl~g 216 (519)
|++..+..... +++..+. ..++| +++|.||+|+..+..+ .+.+.....+.|..... -+..+|.+||+.+
T Consensus 81 Ditd~~~~~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd~ 159 (331)
T 3r7w_B 81 DSQDEYINAITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDH 159 (331)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSSS
T ss_pred ECCchHHHHHHHHHHHHHHHhhcCCCCc-EEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCCC
Confidence 99876332222 2233332 23566 5568999999864322 23343333333322211 2467889999642
Q ss_pred CcCChhHHHHHHHHHHhhcC
Q 010060 217 GKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 217 ~~Y~~~ei~~LlR~I~~~~~ 236 (519)
.+..+...|.....
T Consensus 160 ------nV~eAFs~iv~~li 173 (331)
T 3r7w_B 160 ------SIYEAFSRIVQKLI 173 (331)
T ss_dssp ------HHHHHHHHHHTTSS
T ss_pred ------cHHHHHHHHHHHHH
Confidence 45555555554433
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.86 E-value=2.2e-08 Score=104.24 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=51.6
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc------CccccccccEEEEecC---------------ceeEEEEcCCCCch---
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK------HNVPEVRGPITIVSGK---------------QRRLQFVECPNDIN--- 130 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr------~~v~~~~G~iti~~~~---------------~~rl~fIDtPGdl~--- 130 (519)
..|+|||+||||||||+|+|++.... .++....|.+.+ ... ...+.|+||||...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~-~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM-PDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEec-CCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 57999999999999999999985310 011111232211 110 14799999999532
Q ss_pred -------hHHHHhhccCEEEEEEeCCC
Q 010060 131 -------GMIDCAKIADLALLLIDGSY 150 (519)
Q Consensus 131 -------smld~ak~ADlVLLVVDas~ 150 (519)
.++..++.||++|+|+|++.
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 25677899999999999975
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.83 E-value=1.9e-08 Score=104.92 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=51.9
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc---CccccccccEEEEec---------------------CceeEEEEcCCCCc-
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK---HNVPEVRGPITIVSG---------------------KQRRLQFVECPNDI- 129 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr---~~v~~~~G~iti~~~---------------------~~~rl~fIDtPGdl- 129 (519)
+.|+|||+||+|||||+|+|++.... .+..++...+.+... ....+.|+||||..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 46899999999999999999986310 011111111112211 13479999999942
Q ss_pred ---------hhHHHHhhccCEEEEEEeCCC
Q 010060 130 ---------NGMIDCAKIADLALLLIDGSY 150 (519)
Q Consensus 130 ---------~smld~ak~ADlVLLVVDas~ 150 (519)
+.++..++.||++++|+|++.
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 236778899999999999974
No 199
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.74 E-value=4.2e-08 Score=92.91 Aligned_cols=146 Identities=18% Similarity=0.196 Sum_probs=79.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc-Cccccc---cc-------------cEEEEe-c-------------------
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPEV---RG-------------PITIVS-G------------------- 115 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~~---~G-------------~iti~~-~------------------- 115 (519)
.++.|+|+|.+|||||||+++|+..... ..+..+ .+ .+..+. +
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 3579999999999999999999976311 111100 01 011111 0
Q ss_pred CceeEEEEcCCCCchhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCH-HHHHHHHHHH
Q 010060 116 KQRRLQFVECPNDINGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDV-KKLRKTKQRL 194 (519)
Q Consensus 116 ~~~rl~fIDtPGdl~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~-k~l~~~kk~L 194 (519)
....+.++||+|.+..........+.+++|+|+..+.... ...... .+.|.+ +|+||+|+.... ..+.+..+.+
T Consensus 117 ~~~d~~~id~~g~i~~~~s~~~~~~~~~~v~~~~~~~~~~-~~~~~~---~~~~~i-iv~NK~Dl~~~~~~~~~~~~~~~ 191 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTI-EKHPGI---MKTADL-IVINKIDLADAVGADIKKMENDA 191 (226)
T ss_dssp GGCSEEEEECCSCSSGGGGCCCSCSEEEEEEEGGGCTTTT-TTCHHH---HTTCSE-EEEECGGGHHHHTCCHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCcchhhhccCcEEEEEecCcchhhH-hhhhhH---hhcCCE-EEEeccccCchhHHHHHHHHHHH
Confidence 0125777888774322111112456677888864322111 011111 356755 489999986321 1233333333
Q ss_pred HHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHh
Q 010060 195 KHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 195 k~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
+. +....++|++||++| .++..+...|..
T Consensus 192 ~~-----~~~~~~~~~~Sa~~g-----~gv~~l~~~l~~ 220 (226)
T 2hf9_A 192 KR-----INPDAEVVLLSLKTM-----EGFDKVLEFIEK 220 (226)
T ss_dssp HH-----HCTTSEEEECCTTTC-----TTHHHHHHHHHH
T ss_pred HH-----hCCCCeEEEEEecCC-----CCHHHHHHHHHH
Confidence 22 234678999999977 566666665544
No 200
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.71 E-value=8.1e-08 Score=104.03 Aligned_cols=109 Identities=15% Similarity=0.202 Sum_probs=66.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC--c---ccc---------------ccccEEEEe-----------------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--N---VPE---------------VRGPITIVS----------------- 114 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~---v~~---------------~~G~iti~~----------------- 114 (519)
.+|.+|+|+|++|||||||+++|.....+. . +.. ....+.++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 567899999999999999999999432110 0 000 000111111
Q ss_pred --cCceeEEEEcCCCCch---hHHH----H--hhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCC
Q 010060 115 --GKQRRLQFVECPNDIN---GMID----C--AKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD 183 (519)
Q Consensus 115 --~~~~rl~fIDtPGdl~---smld----~--ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~ 183 (519)
.....++||||||.+. .++. . +-.+|.+|||+|+..+.+ ....+..+... +|..++|+||+|....
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccc
Confidence 1456899999999642 1211 1 237899999999988764 33444444332 5633458999998753
No 201
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.66 E-value=5e-08 Score=103.58 Aligned_cols=133 Identities=14% Similarity=0.230 Sum_probs=79.9
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc-Ccccc-ccc----cEEEEe-c--CceeEEEEcCCCC---ch------------
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK-HNVPE-VRG----PITIVS-G--KQRRLQFVECPND---IN------------ 130 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr-~~v~~-~~G----~iti~~-~--~~~rl~fIDtPGd---l~------------ 130 (519)
+.|+|+|++|+|||||+|.|++..-. ..+.. ..+ .+.++. . ....++++|+||- +.
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 34999999999999999999997310 01110 011 122221 1 1237899999862 11
Q ss_pred -h----HHHHh-h---------cc--C-EEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHH
Q 010060 131 -G----MIDCA-K---------IA--D-LALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQ 192 (519)
Q Consensus 131 -s----mld~a-k---------~A--D-lVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk 192 (519)
. ++... . .+ | +++||+|+..++.....+++..|. .+.| ||+|+||+|.+.+ ..+..+++
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~-vI~Vi~KtD~Lt~-~E~~~l~~ 199 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVN-IIPIIAKADAISK-SELTKFKI 199 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSE-EEEEESCGGGSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCC-EEEEEcchhccch-HHHHHHHH
Confidence 1 11111 1 12 2 577888998888888888988886 4555 7779999999964 44566666
Q ss_pred HHHHhhhhhccCCceEEEEec
Q 010060 193 RLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 193 ~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.+...+. ..+.+||++|.
T Consensus 200 ~I~~~L~---~~gi~I~~is~ 217 (427)
T 2qag_B 200 KITSELV---SNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHB---TTBCCCCCCC-
T ss_pred HHHHHHH---HcCCcEEecCC
Confidence 6655442 25778888883
No 202
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.65 E-value=1.1e-07 Score=96.19 Aligned_cols=140 Identities=20% Similarity=0.300 Sum_probs=74.3
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhc-c-ccCccc--------cc-cccEEEE---ecCceeEEEEcCCCC--------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKH-Y-TKHNVP--------EV-RGPITIV---SGKQRRLQFVECPND-------- 128 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~-~-Tr~~v~--------~~-~G~iti~---~~~~~rl~fIDtPGd-------- 128 (519)
.+-.+.|+|+|++|+|||||++.|++. . ....+. .. ...+.+. ......++++||||.
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 455689999999999999999999875 1 111110 00 0011111 123457899999984
Q ss_pred -chhHHH--------H---h----------hccCEEEEEEeCCC-CCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHH
Q 010060 129 -INGMID--------C---A----------KIADLALLLIDGSY-GFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVK 185 (519)
Q Consensus 129 -l~smld--------~---a----------k~ADlVLLVVDas~-g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k 185 (519)
+..+++ . + ..|+++|++++.+. ++++...+++..+. ...| +++|+||.|+... .
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~-iilV~~K~Dl~~~-~ 171 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKADTLTL-K 171 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSC-EEEEECCGGGSCH-H
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCC-EEEEEEeCCCCCH-H
Confidence 122222 1 1 12345777777654 58877767766654 3455 5668999999853 2
Q ss_pred HHHHHHHHHHHhhhhhccCCceEEEEecccC
Q 010060 186 KLRKTKQRLKHRFWTEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 186 ~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g 216 (519)
.+...++.+...+.. .+.++|.+||+++
T Consensus 172 e~~~~~~~~~~~~~~---~~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 172 ERERLKKRILDEIEE---HNIKIYHLPDAES 199 (301)
T ss_dssp HHHHHHHHHHHHHHH---TTCCCCCCC----
T ss_pred HHHHHHHHHHHHHHH---cCCeEEecCCccc
Confidence 333333333332211 2468899999865
No 203
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.54 E-value=3.4e-07 Score=91.30 Aligned_cols=121 Identities=21% Similarity=0.362 Sum_probs=77.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccC--cc-------cc--ccccEEEEe---cCceeEEEEcCCCC------------
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKH--NV-------PE--VRGPITIVS---GKQRRLQFVECPND------------ 128 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v-------~~--~~G~iti~~---~~~~rl~fIDtPGd------------ 128 (519)
++|+|+|++|+|||||+|.|++..... .+ .. ....+..+. .....++++|+||-
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 589999999999999999999963211 00 00 001122221 12347899999972
Q ss_pred chhHHH-----H--------------hhccCEEEEEEeC-CCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHH
Q 010060 129 INGMID-----C--------------AKIADLALLLIDG-SYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLR 188 (519)
Q Consensus 129 l~smld-----~--------------ak~ADlVLLVVDa-s~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~ 188 (519)
+...+. . ...|.++|+++|. +.++.+...+++..|... + .+|+|++|+|.+.. ..+.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~-~vI~Vi~K~D~lt~-~e~~ 159 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-V-NIIPVIAKADTMTL-EEKS 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-S-EEEEEETTGGGSCH-HHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-C-cEEEEEeccccCCH-HHHH
Confidence 111111 0 1236888999996 488988888999998876 4 47779999999964 4455
Q ss_pred HHHHHHHHhh
Q 010060 189 KTKQRLKHRF 198 (519)
Q Consensus 189 ~~kk~Lk~~f 198 (519)
..++.+.+.+
T Consensus 160 ~~k~~i~~~l 169 (270)
T 3sop_A 160 EFKQRVRKEL 169 (270)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666665544
No 204
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.53 E-value=2e-07 Score=99.18 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=67.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC--ccc-------------------------cc------cccEEEE-----
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP-------------------------EV------RGPITIV----- 113 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~-------------------------~~------~G~iti~----- 113 (519)
.+|.+|+|+|++|+||||+++.|....... .+. .. ..+..+.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~ 176 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME 176 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH
Confidence 457899999999999999999999853110 000 00 0000000
Q ss_pred ecCceeEEEEcCCCCch---hHHH------HhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCC-CeEEEEEEccCCCC
Q 010060 114 SGKQRRLQFVECPNDIN---GMID------CAKIADLALLLIDGSYGFEMETFEFLNLMQNHGL-PRVMGVLTHLDKFK 182 (519)
Q Consensus 114 ~~~~~rl~fIDtPGdl~---smld------~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~Gi-P~VI~VlNKlDl~~ 182 (519)
......++||||||.+. .++. .+..+|.++||+|+..+. .....+..+. .++ |...+|+||+|...
T Consensus 177 ~~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 177 KFKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp TTSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSCS
T ss_pred HhhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCcc
Confidence 01346799999999643 1222 123689999999998765 2334444433 246 64666899999864
No 205
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.51 E-value=1.6e-06 Score=91.73 Aligned_cols=157 Identities=14% Similarity=0.050 Sum_probs=92.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCcccc-ccc------cEEEEec-CceeEEEEcCCCC------chhHHHHh--
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPE-VRG------PITIVSG-KQRRLQFVECPND------INGMIDCA-- 136 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~-~~G------~iti~~~-~~~rl~fIDtPGd------l~smld~a-- 136 (519)
.+.+|+|+|++|+|||||+|.|++......... +.| .+ +... ....++++|+||- +..+++.+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~-v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH-PYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE-EEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE-eccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 446999999999999999999999532111100 111 11 2222 2236899999983 33344433
Q ss_pred hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC--------CHHHHHHHHHHHHHhhh----hhccC
Q 010060 137 KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK--------DVKKLRKTKQRLKHRFW----TEIYD 204 (519)
Q Consensus 137 k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~--------~~k~l~~~kk~Lk~~f~----~e~~~ 204 (519)
...|..++ +|+.. ++.+...++..+...+.|. ++|+||.|++- +.....++.+.+++..+ ....+
T Consensus 147 ~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~-~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 147 YEYDFFII-ISATR-FKKNDIDIAKAISMMKKEF-YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEE-EEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCe-EEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33466555 77754 5566677888888888875 56899988641 00011223333333221 11134
Q ss_pred CceEEEEecccCCcCChhHHHHHHHHHHhhcC
Q 010060 205 GAKLFYLSGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 205 ~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
...+|++|+..- ...++..|+..|....+
T Consensus 224 ~~~iiliSsh~l---~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 224 EPPIFLLSNKNV---CHYDFPVLMDKLISDLP 252 (413)
T ss_dssp SCCEEECCTTCT---TSTTHHHHHHHHHHHSC
T ss_pred CCcEEEEecCcC---CccCHHHHHHHHHHhCc
Confidence 568899998432 22457777777765544
No 206
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.47 E-value=9.9e-09 Score=106.77 Aligned_cols=122 Identities=15% Similarity=0.133 Sum_probs=71.0
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc----cCccccccccEE-E-EecCceeEEEEcCCCCch----------hHHHHh--
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT----KHNVPEVRGPIT-I-VSGKQRRLQFVECPNDIN----------GMIDCA-- 136 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T----r~~v~~~~G~it-i-~~~~~~rl~fIDtPGdl~----------smld~a-- 136 (519)
..|+++|.+|+|||||+|+|++... ...+....|... . .......+.++||||-+. ..+..+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~ 242 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIITP 242 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhc
Confidence 5799999999999999999998721 111111222110 1 111233589999999321 123333
Q ss_pred -hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhh
Q 010060 137 -KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRF 198 (519)
Q Consensus 137 -k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f 198 (519)
+..|.+++++++....-......+..+...+.| +++|+||.|.+... .+....+.+++.+
T Consensus 243 ~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~-~~~v~~k~d~~~~~-~~~~~~~~~~~~~ 303 (369)
T 3ec1_A 243 KREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRS-FVCYMANELTVHRT-KLEKADSLYANQL 303 (369)
T ss_dssp SSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEEE-EGGGHHHHHHHHB
T ss_pred ccccCceEEEEcCCceEEECCEEEEEEccCCCce-EEEEecCCcccccc-cHHHHHHHHHHhc
Confidence 778999999999532111112223334445666 55689999997532 2344444444443
No 207
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.42 E-value=7.7e-06 Score=87.22 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=76.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCc--cc--c----------------ccccEEEEe----------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN--VP--E----------------VRGPITIVS---------------- 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~--v~--~----------------~~G~iti~~---------------- 114 (519)
..+|.+|+++|++|+||||++..|........ +. . ....+.++.
T Consensus 97 ~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 97 KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 34689999999999999999999986421110 00 0 001122221
Q ss_pred ---cCceeEEEEcCCCCch---h-H-----HHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 115 ---GKQRRLQFVECPNDIN---G-M-----IDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 115 ---~~~~rl~fIDtPGdl~---s-m-----ld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
..+..+++|||||.+. . + +..+..+|.++||+||..+.. ....+..+.. .++...+|+||+|...
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~-~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKE-ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHH-SCTTEEEEEECCSSCS
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHh-hCCCeEEEEECCCCcc
Confidence 1236899999999422 1 1 122346899999999987632 2333444432 3343445799999976
Q ss_pred CHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 183 DVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 183 ~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.......+.. ..+.|+.+++.
T Consensus 254 ~gG~~ls~~~----------~~g~PI~fig~ 274 (443)
T 3dm5_A 254 KGGGALSAVA----------ATGAPIKFIGT 274 (443)
T ss_dssp SHHHHHHHHH----------TTCCCEEEEEC
T ss_pred cccHHHHHHH----------HHCCCEEEEEc
Confidence 4433222211 13678888774
No 208
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.39 E-value=2.3e-08 Score=104.08 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=70.6
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccC-----ccccccccEEEE---ecCceeEEEEcCCCCch-----h-----HHHH-
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKH-----NVPEVRGPITIV---SGKQRRLQFVECPNDIN-----G-----MIDC- 135 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~-----~v~~~~G~iti~---~~~~~rl~fIDtPGdl~-----s-----mld~- 135 (519)
..|+++|.+|+|||||+|+|++..... .+....| +|.. ......+.++||||-+. . .+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~g-tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPG-TTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC-----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCC-eecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 579999999999999999999974211 1111222 1211 11123489999999321 1 1221
Q ss_pred --hhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhh
Q 010060 136 --AKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRF 198 (519)
Q Consensus 136 --ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f 198 (519)
.+..+.+++++++....-......+..+...+.| +++|+||+|.+... .+....+.+++.+
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~-~~~v~nk~d~~~~~-~~~~~~~~~~~~~ 302 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRA-FTCHFSNRLTIHRT-KLEKADELYKNHA 302 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEEE-EHHHHHHHHHHHB
T ss_pred ccccccCceEEEEcCCCEEEEcceEEEEEecCCCce-EEEEecCccccccc-cHHHHHHHHHHHh
Confidence 3678899999998432211122223334445666 55689999998543 3445555555544
No 209
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.33 E-value=5.5e-06 Score=83.70 Aligned_cols=107 Identities=19% Similarity=0.301 Sum_probs=67.8
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccC--ccc----cc--------------cccEEEEe-------------------
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP----EV--------------RGPITIVS------------------- 114 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~----~~--------------~G~iti~~------------------- 114 (519)
+.+|+++|++|+||||++..|....... .+. ++ ...+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998652110 000 00 00111111
Q ss_pred cCceeEEEEcCCCCch-----hHH------HHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCC
Q 010060 115 GKQRRLQFVECPNDIN-----GMI------DCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD 183 (519)
Q Consensus 115 ~~~~rl~fIDtPGdl~-----sml------d~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~ 183 (519)
.....+++|||||.+. .++ ..+..+|.++||+|+..+ .+....+..+.. .+|...+|+||+|....
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTAK 254 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCTT
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCcc
Confidence 1345799999999654 232 245679999999999754 233444444443 46645568999998643
No 210
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.32 E-value=1.6e-05 Score=84.64 Aligned_cols=130 Identities=17% Similarity=0.245 Sum_probs=75.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCc--cc----------------c--ccccEEEEe----------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHN--VP----------------E--VRGPITIVS---------------- 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~--v~----------------~--~~G~iti~~---------------- 114 (519)
..+|.+|+++|++|+||||++..|........ +. . ..-.+.+..
T Consensus 94 ~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 94 TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 45689999999999999999999986421100 00 0 000111110
Q ss_pred ---cCceeEEEEcCCCCch---------hHHH--HhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCC
Q 010060 115 ---GKQRRLQFVECPNDIN---------GMID--CAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDK 180 (519)
Q Consensus 115 ---~~~~rl~fIDtPGdl~---------smld--~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl 180 (519)
.....+++|||||.+. .+.. .+-..|.++||+|+..+.+ ....+..+... ++...+|+||+|.
T Consensus 174 ~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~-~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQA-SPIGSVIITKMDG 250 (433)
T ss_dssp HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHH-CSSEEEEEECGGG
T ss_pred HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcc-cCCcEEEEecccc
Confidence 1256799999999533 1111 1234699999999987633 33444444422 2223457999998
Q ss_pred CCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 181 FKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 181 ~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.........+... .+.|+.+++.
T Consensus 251 ~a~~G~als~~~~----------~g~Pi~fig~ 273 (433)
T 3kl4_A 251 TAKGGGALSAVVA----------TGATIKFIGT 273 (433)
T ss_dssp CSCHHHHHHHHHH----------HTCEEEEEEC
T ss_pred cccchHHHHHHHH----------HCCCEEEEEC
Confidence 7543332222221 2678888774
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.28 E-value=1e-06 Score=92.76 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=49.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC------ccccccccEEEEec--------------CceeEEEEcCCCCch-
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH------NVPEVRGPITIVSG--------------KQRRLQFVECPNDIN- 130 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~------~v~~~~G~iti~~~--------------~~~rl~fIDtPGdl~- 130 (519)
..+..|+|||+||||||||+|+|++..... ++....|.+.+-.. ....++|+||||...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 345789999999999999999999862100 01001121111000 023599999999422
Q ss_pred ---------hHHHHhhccCEEEEEEeCC
Q 010060 131 ---------GMIDCAKIADLALLLIDGS 149 (519)
Q Consensus 131 ---------smld~ak~ADlVLLVVDas 149 (519)
..+..++.||++|+|+|++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAF 127 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecC
Confidence 3577889999999999996
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.14 E-value=5.4e-06 Score=87.13 Aligned_cols=79 Identities=11% Similarity=0.180 Sum_probs=53.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc----cC---ccccccccEEEEec--------------CceeEEEEcCCCC--
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT----KH---NVPEVRGPITIVSG--------------KQRRLQFVECPND-- 128 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T----r~---~v~~~~G~iti~~~--------------~~~rl~fIDtPGd-- 128 (519)
.....|+|||+||+|||||+|+|++... .. .+....|.+.+... ....+.|+|+||.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4457999999999999999999999421 10 11111232332110 0135899999982
Q ss_pred -------ch-hHHHHhhccCEEEEEEeCCC
Q 010060 129 -------IN-GMIDCAKIADLALLLIDGSY 150 (519)
Q Consensus 129 -------l~-smld~ak~ADlVLLVVDas~ 150 (519)
+. .++..+..+|.+++|+|+..
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 46778899999999999964
No 213
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.12 E-value=2.7e-06 Score=93.84 Aligned_cols=89 Identities=15% Similarity=0.231 Sum_probs=55.6
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCcc-----ccccccEEEE-----ecCceeEEEEcCCCCch-------h--
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNV-----PEVRGPITIV-----SGKQRRLQFVECPNDIN-------G-- 131 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v-----~~~~G~iti~-----~~~~~rl~fIDtPGdl~-------s-- 131 (519)
..+..+|+|+|+||+|||||+|+|++....-.+ ....| +..+ ......+.|+||||-.. .
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~g-i~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKG-IWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCS-EEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeE-EEEeecccccCCCceEEEecCCCcCcccccchhHHH
Confidence 456689999999999999999999997421111 11123 2222 23467899999999321 1
Q ss_pred -H--HHHhhccCEEEEEEeCCCCCcccHHHHHHHH
Q 010060 132 -M--IDCAKIADLALLLIDGSYGFEMETFEFLNLM 163 (519)
Q Consensus 132 -m--ld~ak~ADlVLLVVDas~g~e~et~e~L~~L 163 (519)
. +..+ .++ ++|+|+..++..+...+|.++
T Consensus 114 ~~fala~l-lss--~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 114 WIFALAVL-LSS--TFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp HHHHHHHH-HCS--EEEEEEESCSSHHHHHTTHHH
T ss_pred HHHHHHHH-hcC--eEEEECCCCccHHHHHHHHHH
Confidence 1 1111 234 567787777887766555543
No 214
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.01 E-value=7.3e-05 Score=76.60 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=74.5
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC--cccc------------------ccccEEEEe----------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVPE------------------VRGPITIVS---------------- 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~~------------------~~G~iti~~---------------- 114 (519)
..+|.+|+++|++|+|||||++.|.+..... .+.- ..-++.++.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 3568899999999999999999999863111 0000 000111110
Q ss_pred ---cCceeEEEEcCCCCch---hH------HHHhhccCEEEEEEeCCCCCcccHHHHHHHHH-hcCCCeEEEEEEccCCC
Q 010060 115 ---GKQRRLQFVECPNDIN---GM------IDCAKIADLALLLIDGSYGFEMETFEFLNLMQ-NHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 115 ---~~~~rl~fIDtPGdl~---sm------ld~ak~ADlVLLVVDas~g~e~et~e~L~~L~-~~GiP~VI~VlNKlDl~ 181 (519)
.....+.++||+|... .+ +..+-..|-.++++|+..+. +..+.+..+. ..++.. +|+||+|..
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~--iilTKlD~~ 281 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDG--IILTKLDAD 281 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCE--EEEECGGGC
T ss_pred HHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCE--EEEeCcCCc
Confidence 0134578899998421 11 12234589999999987663 3334444443 346553 369999975
Q ss_pred CCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 182 KDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 182 ~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.....+..+... .+.+|.+++
T Consensus 282 a~~G~~l~~~~~----------~~~pi~~i~ 302 (328)
T 3e70_C 282 ARGGAALSISYV----------IDAPILFVG 302 (328)
T ss_dssp SCCHHHHHHHHH----------HTCCEEEEE
T ss_pred cchhHHHHHHHH----------HCCCEEEEe
Confidence 433332222221 157788877
No 215
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.87 E-value=0.00014 Score=77.18 Aligned_cols=109 Identities=20% Similarity=0.244 Sum_probs=65.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccC---ccc------------------cccccEEEEe----------------
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKH---NVP------------------EVRGPITIVS---------------- 114 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~---~v~------------------~~~G~iti~~---------------- 114 (519)
.+|.+|+++|++|+||||++..|....... .+. .....+.++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 567899999999999999999998542211 000 0000111111
Q ss_pred ---cCceeEEEEcCCCCch---hHH------HHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 115 ---GKQRRLQFVECPNDIN---GMI------DCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 115 ---~~~~rl~fIDtPGdl~---sml------d~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
.....++||||||.+. .++ +.+..+|.++||+|+..+. .....+..+.. +++..-+|+||+|...
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEEECTTSSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEEecCCCCc
Confidence 1346799999999533 122 2345789999999998663 23333333332 2342223799999864
Q ss_pred C
Q 010060 183 D 183 (519)
Q Consensus 183 ~ 183 (519)
.
T Consensus 255 ~ 255 (433)
T 2xxa_A 255 R 255 (433)
T ss_dssp C
T ss_pred c
Confidence 3
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.86 E-value=0.00012 Score=78.98 Aligned_cols=128 Identities=22% Similarity=0.385 Sum_probs=73.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC--ccc----------------c--ccccEEEEe----------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP----------------E--VRGPITIVS---------------- 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~----------------~--~~G~iti~~---------------- 114 (519)
-.++.+|+|+|++|+|||||++.|.+..... .+. . .+..+.++.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 3567899999999999999999999852110 000 0 000011110
Q ss_pred ---cCceeEEEEcCCCCch----------hHHHHhh-----ccCEEEEEEeCCCCCcccHHHHHHHHH-hcCCCeEEEEE
Q 010060 115 ---GKQRRLQFVECPNDIN----------GMIDCAK-----IADLALLLIDGSYGFEMETFEFLNLMQ-NHGLPRVMGVL 175 (519)
Q Consensus 115 ---~~~~rl~fIDtPGdl~----------smld~ak-----~ADlVLLVVDas~g~e~et~e~L~~L~-~~GiP~VI~Vl 175 (519)
..+..+++|||+|.+. .+...++ ..+-+|||+|++.|.. ....+..+. ..|+..+ |+
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~itgv--Il 445 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVGLTGI--TL 445 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTCCSEE--EE
T ss_pred HHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcCCCEE--EE
Confidence 1235689999999532 1122222 2567899999987632 223333333 4577654 69
Q ss_pred EccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 176 THLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 176 NKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
||+|.......+..+... + +.+|.|+.
T Consensus 446 TKLD~takgG~~lsi~~~----~------~~PI~fig 472 (503)
T 2yhs_A 446 TKLDGTAKGGVIFSVADQ----F------GIPIRYIG 472 (503)
T ss_dssp ECGGGCSCCTHHHHHHHH----H------CCCEEEEE
T ss_pred EcCCCcccccHHHHHHHH----H------CCCEEEEe
Confidence 999975433333333322 1 46777765
No 217
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.84 E-value=0.00015 Score=73.61 Aligned_cols=128 Identities=20% Similarity=0.323 Sum_probs=72.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC--ccc----------------cc--cccEEEEe----------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP----------------EV--RGPITIVS---------------- 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~----------------~~--~G~iti~~---------------- 114 (519)
..+|.+|+|+|++|+||||++..|.+..... .+. .. .-.+.++.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3567899999999999999999998753110 000 00 00111211
Q ss_pred ---cCceeEEEEcCCCCchh---HHH-------Hh-----hccCEEEEEEeCCCCCcccHHH-HHHHHHhcCCCeEEEEE
Q 010060 115 ---GKQRRLQFVECPNDING---MID-------CA-----KIADLALLLIDGSYGFEMETFE-FLNLMQNHGLPRVMGVL 175 (519)
Q Consensus 115 ---~~~~rl~fIDtPGdl~s---mld-------~a-----k~ADlVLLVVDas~g~e~et~e-~L~~L~~~GiP~VI~Vl 175 (519)
.....++++||||.+.. +++ .+ ...|.++||+|+..+. .... ...+....++..+ |+
T Consensus 181 ~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~~~~i~gv--Vl 256 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAVNVTGI--IL 256 (306)
T ss_dssp HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHSCCCEE--EE
T ss_pred HHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHhcCCCCEE--EE
Confidence 12456999999995321 111 11 2378999999997442 1222 2222233455544 68
Q ss_pred EccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 176 THLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 176 NKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
||+|.......+..+...+ +.||.|++
T Consensus 257 Tk~D~~~~gG~~l~~~~~~----------~~Pi~~i~ 283 (306)
T 1vma_A 257 TKLDGTAKGGITLAIAREL----------GIPIKFIG 283 (306)
T ss_dssp ECGGGCSCTTHHHHHHHHH----------CCCEEEEE
T ss_pred eCCCCccchHHHHHHHHHH----------CCCEEEEe
Confidence 9999865443333333221 56777776
No 218
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.72 E-value=0.00028 Score=71.87 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=64.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC--cc----------------ccc-----cccEEEE-e------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NV----------------PEV-----RGPITIV-S------------ 114 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v----------------~~~-----~G~iti~-~------------ 114 (519)
..++.+|+|+|++|+||||++..|.+..... .+ ... ...+.++ .
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~ 181 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVF 181 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHH
Confidence 4567899999999999999999998752100 00 000 1223333 1
Q ss_pred -------cCceeEEEEcCCCCchh---HHHH-------h-----hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEE
Q 010060 115 -------GKQRRLQFVECPNDING---MIDC-------A-----KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVM 172 (519)
Q Consensus 115 -------~~~~rl~fIDtPGdl~s---mld~-------a-----k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI 172 (519)
.....+++|||||.+.. ++.. + ..+|.++||+++..+ .....-+..+. ..++..=
T Consensus 182 ~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~-~~~~i~G 258 (320)
T 1zu4_A 182 DAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFS-KVADVSG 258 (320)
T ss_dssp HHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHT-TTSCCCE
T ss_pred HHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHh-hcCCCcE
Confidence 12467999999996542 2211 1 237999999999854 22222222222 1233222
Q ss_pred EEEEccCCCCC
Q 010060 173 GVLTHLDKFKD 183 (519)
Q Consensus 173 ~VlNKlDl~~~ 183 (519)
+|+||+|....
T Consensus 259 vVltk~d~~~~ 269 (320)
T 1zu4_A 259 IILTKMDSTSK 269 (320)
T ss_dssp EEEECGGGCSC
T ss_pred EEEeCCCCCCc
Confidence 36899997543
No 219
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.71 E-value=0.00048 Score=69.66 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=71.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc--c-------------c---cc--cccEEEEe------------------
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN--V-------------P---EV--RGPITIVS------------------ 114 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~--v-------------~---~~--~G~iti~~------------------ 114 (519)
++.+|+|+|++|||||||++.|.+...... + . .. ...+.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999997531110 0 0 00 00011110
Q ss_pred -cCceeEEEEcCCCCch---hHHH-------H-----hhccCEEEEEEeCCCCCcccHHHHHHHH-HhcCCCeEEEEEEc
Q 010060 115 -GKQRRLQFVECPNDIN---GMID-------C-----AKIADLALLLIDGSYGFEMETFEFLNLM-QNHGLPRVMGVLTH 177 (519)
Q Consensus 115 -~~~~rl~fIDtPGdl~---smld-------~-----ak~ADlVLLVVDas~g~e~et~e~L~~L-~~~GiP~VI~VlNK 177 (519)
.....+.++||+|-.. ..+. + +...+.++|++|+..+.. ..+.+..+ ...|+. + +++||
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~t-~-iivTh 256 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGLT-G-VIVTK 256 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCCS-E-EEEEC
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCCc-E-EEEEC
Confidence 0123577999998422 1111 1 234788999999986643 33333333 334765 3 36999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 178 LDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 178 lDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.|.......+..+.. .+ +.++.|++
T Consensus 257 ~d~~a~gg~~l~i~~----~~------~~pi~~ig 281 (304)
T 1rj9_A 257 LDGTAKGGVLIPIVR----TL------KVPIKFVG 281 (304)
T ss_dssp TTSSCCCTTHHHHHH----HH------CCCEEEEE
T ss_pred CcccccccHHHHHHH----HH------CCCeEEEe
Confidence 997643333333322 22 56777776
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.70 E-value=2.5e-05 Score=78.25 Aligned_cols=55 Identities=29% Similarity=0.446 Sum_probs=34.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEE---ecCceeEEEEcCCCC
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIV---SGKQRRLQFVECPND 128 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~---~~~~~rl~fIDtPGd 128 (519)
..+..|+|+|.||||||||+|+|++.... .+....| +|.. ......+.++||||-
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g-~T~~~~~~~~~~~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPG-ITTSQQWVKVGKELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETTTEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCcee-ecCCCCC-eeeeeEEEEeCCCEEEEECcCc
Confidence 45689999999999999999999986311 1111122 1111 011347999999994
No 221
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.69 E-value=0.00044 Score=73.33 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=62.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCc--cc----------------c--ccccEEEEe------------------
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHN--VP----------------E--VRGPITIVS------------------ 114 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~--v~----------------~--~~G~iti~~------------------ 114 (519)
+|.+|+++|++|+||||++..|........ +. . ....+.++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999987521110 00 0 000111111
Q ss_pred -cCceeEEEEcCCCCch---hHH------HHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 115 -GKQRRLQFVECPNDIN---GMI------DCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 115 -~~~~rl~fIDtPGdl~---sml------d~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
.....+++|||||.+. .++ ..+-.+|.+|||+|+..+. .....+..+.. .++..-+|+||+|...
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~-~l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDE-KVGVTGLVLTKLDGDA 251 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHH-HTCCCEEEEESGGGCS
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHHh-cCCceEEEEeCcCCcc
Confidence 1345699999998542 122 1223589999999997552 22333333322 2332334799999754
No 222
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.69 E-value=0.00011 Score=81.14 Aligned_cols=65 Identities=15% Similarity=0.319 Sum_probs=39.5
Q ss_pred eeEEEEcCCCC---------------chhHHHH-h-hccCEEEEEEeCCCCCccc-HHHHHHHHHhcCCCeEEEEEEccC
Q 010060 118 RRLQFVECPND---------------INGMIDC-A-KIADLALLLIDGSYGFEME-TFEFLNLMQNHGLPRVMGVLTHLD 179 (519)
Q Consensus 118 ~rl~fIDtPGd---------------l~smld~-a-k~ADlVLLVVDas~g~e~e-t~e~L~~L~~~GiP~VI~VlNKlD 179 (519)
..++++|.||- +..++.. + +...++|++++++..+..+ ...++..+...|.+.+ +|+||.|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI-~VlTK~D 225 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI-GILTKPD 225 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE-EEEECGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE-EEecchh
Confidence 46899999962 1123332 2 2346788888876444322 2355555555677754 6899999
Q ss_pred CCCC
Q 010060 180 KFKD 183 (519)
Q Consensus 180 l~~~ 183 (519)
++..
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 9853
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.56 E-value=0.00022 Score=71.33 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=52.2
Q ss_pred cCCCCch----hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 010060 124 ECPNDIN----GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFW 199 (519)
Q Consensus 124 DtPGdl~----smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~ 199 (519)
..||++. .++..++.||+||+|+||..+.......+-.++ .+.|.+ +|+||+|++. ........+ ++.
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~i-lVlNK~DL~~-~~~~~~~~~----~~~ 76 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRI-MLLNKADKAD-AAVTQQWKE----HFE 76 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEE-EEEECGGGSC-HHHHHHHHH----HHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEE-EEEECcccCC-HHHHHHHHH----HHH
Confidence 4689864 367789999999999999987765544444444 467755 5899999985 222222222 221
Q ss_pred hhccCCceEEEEecccC
Q 010060 200 TEIYDGAKLFYLSGLIH 216 (519)
Q Consensus 200 ~e~~~~~kVf~lSAl~g 216 (519)
..+.+++++||.++
T Consensus 77 ---~~g~~~i~iSA~~~ 90 (282)
T 1puj_A 77 ---NQGIRSLSINSVNG 90 (282)
T ss_dssp ---TTTCCEEECCTTTC
T ss_pred ---hcCCcEEEEECCCc
Confidence 12458999999876
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.46 E-value=0.00027 Score=71.22 Aligned_cols=109 Identities=11% Similarity=0.111 Sum_probs=61.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc--C-cccc----c--------------cccEEEE-------------ecCc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK--H-NVPE----V--------------RGPITIV-------------SGKQ 117 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr--~-~v~~----~--------------~G~iti~-------------~~~~ 117 (519)
.++.+|+|+|++|+||||++..|.+.... . .+.. + .-.+.+. ...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~ 182 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSE 182 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcC
Confidence 35679999999999999999999875421 1 1100 0 0000010 0134
Q ss_pred eeEEEEcCCCCch---h-HHH---Hhh--ccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCC
Q 010060 118 RRLQFVECPNDIN---G-MID---CAK--IADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKD 183 (519)
Q Consensus 118 ~rl~fIDtPGdl~---s-mld---~ak--~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~ 183 (519)
..++++||||... . +.+ .+. ..|.+++|+|++.+.. +..++...+...++..+ |+||+|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~gi--Vltk~D~~~~ 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQY--IFTKIDETTS 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEE--EEECTTTCSC
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEE--EEeCCCcccc
Confidence 5799999998432 1 222 222 2577899999986532 11122222222233333 6899998643
No 225
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.40 E-value=0.0015 Score=65.67 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=61.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccC--ccc----------------cc--cccEEEEe------------------
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP----------------EV--RGPITIVS------------------ 114 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~----------------~~--~G~iti~~------------------ 114 (519)
++.+|+++|++|+||||++..|.+..... .+. .. ...+.++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998752110 000 00 00111110
Q ss_pred -cCceeEEEEcCCCCch-------hHHHH--hhccCEEEEEEeCCCCCcccHHHHHHHHH-hcCCCeEEEEEEccCCCCC
Q 010060 115 -GKQRRLQFVECPNDIN-------GMIDC--AKIADLALLLIDGSYGFEMETFEFLNLMQ-NHGLPRVMGVLTHLDKFKD 183 (519)
Q Consensus 115 -~~~~rl~fIDtPGdl~-------smld~--ak~ADlVLLVVDas~g~e~et~e~L~~L~-~~GiP~VI~VlNKlDl~~~ 183 (519)
.....++++||||.+. .+... .-.+|.++||+|+..+ .+..+.+..+. ..++.. +|+||+|....
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~i~g--ivlnk~d~~~~ 252 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVTG--LVLTKLDGDAR 252 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCCE--EEEECGGGCSS
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCCCCE--EEEECCCCCcc
Confidence 0245799999997421 11111 2258999999998754 22223333322 223333 36999997643
No 226
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.35 E-value=0.0017 Score=59.99 Aligned_cols=105 Identities=9% Similarity=0.102 Sum_probs=69.3
Q ss_pred eEEEEECC-CCCChHHHHHHHHhccccCc--c-----------cc----ccccEEEEe-------------cCceeEEEE
Q 010060 75 FVVVVQGP-PQVGKSLLIKSLIKHYTKHN--V-----------PE----VRGPITIVS-------------GKQRRLQFV 123 (519)
Q Consensus 75 ~~VaVVG~-pnvGKSTLIn~Ll~~~Tr~~--v-----------~~----~~G~iti~~-------------~~~~rl~fI 123 (519)
++|+|.+. .|+||||+.-.|.....+.. + .. ....+.+.. .....+++|
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vii 81 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIV 81 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEE
Confidence 46888855 68999999877776421110 0 00 011122222 124679999
Q ss_pred cCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcC-----CCeEEEEEEccCCC
Q 010060 124 ECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHG-----LPRVMGVLTHLDKF 181 (519)
Q Consensus 124 DtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~G-----iP~VI~VlNKlDl~ 181 (519)
|||+.+.. +...+..||.+|+++.++..- .....++..++..+ ++ +.+|+|+++.-
T Consensus 82 D~~~~~~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~~ 143 (206)
T 4dzz_A 82 DGAGSLSVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVE-ARFLITRKIEM 143 (206)
T ss_dssp ECCSSSSHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCE-EEEEECSBCTT
T ss_pred ECCCCCCHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCc-EEEEEeccCCC
Confidence 99987655 567788899999999987655 55667788877543 34 46689999853
No 227
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.35 E-value=0.00043 Score=69.70 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=53.2
Q ss_pred HhhccCEEEEEEeCCCCC-cccH-HHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 135 CAKIADLALLLIDGSYGF-EMET-FEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 135 ~ak~ADlVLLVVDas~g~-e~et-~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
.++.||++|+|+|++.+. .... ..+|..+...++|.+ +|+||+|+..+. .... ...+...+. . .+.++|++|
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~i-lV~NK~DL~~~~-~v~~-~~~~~~~~~-~--~g~~~~~~S 149 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPV-IVFNKIDLLNEE-EKKE-LERWISIYR-D--AGYDVLKVS 149 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEE-EEECCGGGCCHH-HHHH-HHHHHHHHH-H--TTCEEEECC
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEE-EEEEcccCCCcc-ccHH-HHHHHHHHH-H--CCCeEEEEE
Confidence 578999999999998653 3332 256666677788865 589999998532 1111 111222111 1 145899999
Q ss_pred cccCCcCChhHHHHHHHH
Q 010060 213 GLIHGKYSKREIRNLARF 230 (519)
Q Consensus 213 Al~g~~Y~~~ei~~LlR~ 230 (519)
|++| .++..|...
T Consensus 150 A~~g-----~gi~~L~~~ 162 (302)
T 2yv5_A 150 AKTG-----EGIDELVDY 162 (302)
T ss_dssp TTTC-----TTHHHHHHH
T ss_pred CCCC-----CCHHHHHhh
Confidence 9987 345544433
No 228
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.29 E-value=0.00037 Score=72.19 Aligned_cols=106 Identities=12% Similarity=-0.028 Sum_probs=59.7
Q ss_pred EEEEcCCC-CchhHHHHh-hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHh
Q 010060 120 LQFVECPN-DINGMIDCA-KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHR 197 (519)
Q Consensus 120 l~fIDtPG-dl~smld~a-k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~ 197 (519)
+.-++.+. +|.+++..+ ..++++|+|+|++........++...+ .+.| +++|+||+|+.........+.+.+..+
T Consensus 51 ~~~v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~p-iilV~NK~DLl~~~~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 51 VQDVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNP-ILLVGNKADLLPRSVKYPKLLRWMRRM 127 (369)
T ss_dssp --------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSC-EEEEEECGGGSCTTCCHHHHHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCC-EEEEEEChhcCCCccCHHHHHHHHHHH
Confidence 44445544 377777665 788999999999865433322343333 2566 556899999986422223333444433
Q ss_pred hhhhccCCceEEEEecccCCcCChhHHHHHHHHHHh
Q 010060 198 FWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 198 f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
+....+...++|++||++| .++..|...|..
T Consensus 128 ~~~~g~~~~~v~~iSA~~g-----~gi~~L~~~I~~ 158 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKG-----IGMAKVMEAINR 158 (369)
T ss_dssp HHTTTCCCSEEEECBTTTT-----BTHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEECCCC-----CCHHHHHHHHHh
Confidence 3222223358999999977 456666655543
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.26 E-value=0.0003 Score=69.57 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=52.7
Q ss_pred CCCc----hhHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhh
Q 010060 126 PNDI----NGMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTE 201 (519)
Q Consensus 126 PGdl----~smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e 201 (519)
||++ ..+...++.+|+||+|+||+.+.......+- ++ +.|.+ +|+||+|++.. .......+. +..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~i-ivlNK~DL~~~-~~~~~~~~~----~~~- 73 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETI-ILLNKVDIADE-KTTKKWVEF----FKK- 73 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEE-EEEECGGGSCH-HHHHHHHHH----HHH-
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcE-EEEECccCCCH-HHHHHHHHH----HHH-
Confidence 6763 3577889999999999999877654322221 22 77765 58999999853 222222222 211
Q ss_pred ccCCceEEEEecccCCcCChhHHHHHHHHH
Q 010060 202 IYDGAKLFYLSGLIHGKYSKREIRNLARFI 231 (519)
Q Consensus 202 ~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I 231 (519)
.+.++ ++||.++ .++..|...+
T Consensus 74 --~g~~v-~iSa~~~-----~gi~~L~~~l 95 (262)
T 3cnl_A 74 --QGKRV-ITTHKGE-----PRKVLLKKLS 95 (262)
T ss_dssp --TTCCE-EECCTTS-----CHHHHHHHHC
T ss_pred --cCCeE-EEECCCC-----cCHHHHHHHH
Confidence 24567 9999876 4566655544
No 230
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.21 E-value=0.0055 Score=61.79 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.3
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
..++-+|+++|++|+|||||++.|.+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999986
No 231
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.21 E-value=0.0026 Score=65.09 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=66.0
Q ss_pred cCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCC-------CCCcccH----HHHHHHHHh----cCCCeEEEEEE
Q 010060 115 GKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGS-------YGFEMET----FEFLNLMQN----HGLPRVMGVLT 176 (519)
Q Consensus 115 ~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas-------~g~e~et----~e~L~~L~~----~GiP~VI~VlN 176 (519)
.....+.+|||.|. +.+++ .....|+.+|||+|.+ +.-.... ...+..+.. .++| +|+|+|
T Consensus 164 ~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~-iiL~~N 242 (327)
T 3ohm_A 164 LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS-VILFLN 242 (327)
T ss_dssp ETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE-EEEEEE
T ss_pred eeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce-EEEEEE
Confidence 34678899999996 44433 4578999999999775 1111111 223333322 2455 667899
Q ss_pred ccCCCCCH-----------------HHHHHHHHHHHHhhhhhcc---CCceEEEEecccCCcCChhHHHHHHHHHHhhcC
Q 010060 177 HLDKFKDV-----------------KKLRKTKQRLKHRFWTEIY---DGAKLFYLSGLIHGKYSKREIRNLARFISVMKF 236 (519)
Q Consensus 177 KlDl~~~~-----------------k~l~~~kk~Lk~~f~~e~~---~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~~ 236 (519)
|.|+.... ....+..+.+...|..... .....+.+||+.+ ..+..+...+...+.
T Consensus 243 K~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~-----~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 243 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT-----ENIRFVFAAVKDTIL 317 (327)
T ss_dssp CHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH-----HHHHHHHHHHHHHHH
T ss_pred CchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC-----HHHHHHHHHHHHHHH
Confidence 99986311 1233444444444432111 2334667898844 667666655554443
No 232
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.19 E-value=0.0052 Score=63.66 Aligned_cols=129 Identities=18% Similarity=0.246 Sum_probs=72.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccC--ccc----------------cc--cccEEEEe---c------------
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKH--NVP----------------EV--RGPITIVS---G------------ 115 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~--~v~----------------~~--~G~iti~~---~------------ 115 (519)
..++-+|+++|++|+|||||++.|.+..... .+. .. ...+.++. .
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 3567899999999999999999999862100 000 00 00111211 0
Q ss_pred -----CceeEEEEcCCCCch---hHHH------------HhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEE
Q 010060 116 -----KQRRLQFVECPNDIN---GMID------------CAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVL 175 (519)
Q Consensus 116 -----~~~rl~fIDtPGdl~---smld------------~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~Vl 175 (519)
......++|+.|-.. .... .+...+-+|||+|++.+.+.... +..+....|+.. +++
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g~t~--iii 310 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGITG--LIL 310 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCCE--EEE
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcCCeE--EEE
Confidence 123467899988311 1110 12346778999998877765432 222233457663 369
Q ss_pred EccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEe
Q 010060 176 THLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLS 212 (519)
Q Consensus 176 NKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lS 212 (519)
||+|....-.....+...+ +.+|.++.
T Consensus 311 ThlD~~~~gG~~lsi~~~~----------~~pI~~ig 337 (359)
T 2og2_A 311 TKLDGSARGGCVVSVVEEL----------GIPVKFIG 337 (359)
T ss_dssp ESCTTCSCTHHHHHHHHHH----------CCCEEEEE
T ss_pred ecCcccccccHHHHHHHHh----------CCCEEEEe
Confidence 9999865433333332221 56777765
No 233
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.18 E-value=0.0029 Score=65.16 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=43.1
Q ss_pred cCceeEEEEcCCCC--chhHHH-HhhccCEEEEEEeCCCC-------CcccH----HHHH-HHHHh---cCCCeEEEEEE
Q 010060 115 GKQRRLQFVECPND--INGMID-CAKIADLALLLIDGSYG-------FEMET----FEFL-NLMQN---HGLPRVMGVLT 176 (519)
Q Consensus 115 ~~~~rl~fIDtPGd--l~smld-~ak~ADlVLLVVDas~g-------~e~et----~e~L-~~L~~---~GiP~VI~VlN 176 (519)
.....+.+|||.|. +.+++. ....|+.+|||+|.+.- -.... ...+ .++.. .++| +|+|+|
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~p-iiLv~N 236 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAV-KLIFLN 236 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSE-EEEEEE
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCe-EEEEEE
Confidence 35678999999996 445443 56899999999999721 01111 1222 33332 2455 667899
Q ss_pred ccCCCC
Q 010060 177 HLDKFK 182 (519)
Q Consensus 177 KlDl~~ 182 (519)
|+|+..
T Consensus 237 K~DL~~ 242 (340)
T 4fid_A 237 KMDLFE 242 (340)
T ss_dssp CHHHHH
T ss_pred Cchhhh
Confidence 999863
No 234
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.17 E-value=0.0012 Score=66.36 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=63.1
Q ss_pred eeEEEEcCCCCchhHH-HHhhccCEEEEEEeCCCCC-ccc-HHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHH
Q 010060 118 RRLQFVECPNDINGMI-DCAKIADLALLLIDGSYGF-EME-TFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRL 194 (519)
Q Consensus 118 ~rl~fIDtPGdl~sml-d~ak~ADlVLLVVDas~g~-e~e-t~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~L 194 (519)
..+.+||+--.+.++. ..++.||++|+|+|++.+. ... ...++..+...++|. |+|+||+|+.... ...+..+.+
T Consensus 63 ~~~~iwD~qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~pi-ilv~NK~DL~~~~-~v~~~~~~~ 140 (301)
T 1u0l_A 63 GSGVIENVLHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELET-VMVINKMDLYDED-DLRKVRELE 140 (301)
T ss_dssp SSEEEEEECCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEE-EEEECCGGGCCHH-HHHHHHHHH
T ss_pred CeEEEEEEccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCE-EEEEeHHHcCCch-hHHHHHHHH
Confidence 3789999843344433 3578999999999998653 222 224555556667875 5589999998532 222222222
Q ss_pred HHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHH
Q 010060 195 KHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFI 231 (519)
Q Consensus 195 k~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I 231 (519)
+.+ ... .++|++||++| .++..+...+
T Consensus 141 -~~~-~~~---~~~~~~SAktg-----~gv~~lf~~l 167 (301)
T 1u0l_A 141 -EIY-SGL---YPIVKTSAKTG-----MGIEELKEYL 167 (301)
T ss_dssp -HHH-TTT---SCEEECCTTTC-----TTHHHHHHHH
T ss_pred -HHH-hhh---CcEEEEECCCC-----cCHHHHHHHh
Confidence 111 111 68999999987 4566665544
No 235
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.12 E-value=0.00012 Score=72.44 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=32.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEEE---ecCceeEEEEcCCCC
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIV---SGKQRRLQFVECPND 128 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~---~~~~~rl~fIDtPGd 128 (519)
..|+++|.||+|||||+|+|++.... .+....| +|.. ......+.++||||-
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g-~T~~~~~~~~~~~~~l~DtpG~ 154 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPG-ITKGIQWFSLENGVKILDTPGI 154 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------CCSCEEECTTSCEEESSCEE
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCC-CccceEEEEeCCCEEEEECCCc
Confidence 58999999999999999999986421 1111112 1110 112347899999994
No 236
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.10 E-value=0.00052 Score=73.23 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
..+-.+|+|+|++++|||||+|.|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345689999999999999999999974
No 237
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.08 E-value=0.0039 Score=62.33 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=49.7
Q ss_pred eeEEEEcCCCCch--hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 118 RRLQFVECPNDIN--GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 118 ~rl~fIDtPGdl~--smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
..+++||||..+. .....+..||.+|+|+.+...-.......+..|...|.+.+-+|+|+++.-
T Consensus 202 yD~VIIDtpp~~~~~da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCTHHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchHHHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 3589999997543 356677889999999998755545566788888888988776789999864
No 238
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.02 E-value=0.00078 Score=69.79 Aligned_cols=104 Identities=16% Similarity=0.033 Sum_probs=57.7
Q ss_pred EEcCCC-CchhHHHHh-hccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhh
Q 010060 122 FVECPN-DINGMIDCA-KIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFW 199 (519)
Q Consensus 122 fIDtPG-dl~smld~a-k~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~ 199 (519)
-++.+. .|.+++..+ ..+|++|+|+|++.....+..++...+ .+.| +++|+||+|+.........+.+.+...+.
T Consensus 51 ~v~~~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p-~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 51 DVSLTDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNK-VLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -----CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSC-EEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCc-EEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 334443 367777655 467799999999863221112333332 3667 55689999998543222233333333222
Q ss_pred hhccCCceEEEEecccCCcCChhHHHHHHHHHHh
Q 010060 200 TEIYDGAKLFYLSGLIHGKYSKREIRNLARFISV 233 (519)
Q Consensus 200 ~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~ 233 (519)
...+...++|.+||++| .++..|...|..
T Consensus 128 ~~g~~~~~v~~iSA~~g-----~gi~~L~~~l~~ 156 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKG-----QGIAELADAIEY 156 (368)
T ss_dssp HTTCCCSEEEECCTTTC-----TTHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCC-----cCHHHHHhhhhh
Confidence 22223348999999977 566667766654
No 239
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.94 E-value=0.0012 Score=68.29 Aligned_cols=115 Identities=8% Similarity=0.069 Sum_probs=67.9
Q ss_pred cCceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCCCCc-------cc----HHHHHHHHHh----cCCCeEEEEEE
Q 010060 115 GKQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSYGFE-------ME----TFEFLNLMQN----HGLPRVMGVLT 176 (519)
Q Consensus 115 ~~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~g~e-------~e----t~e~L~~L~~----~GiP~VI~VlN 176 (519)
.....+.+|||+|. +..++ .....|+++|||+|.+..-. .. ...++..+.. .++| +|+|+|
T Consensus 190 ~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p-iiLv~N 268 (353)
T 1cip_A 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS-IILFLN 268 (353)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE-EEEEEE
T ss_pred eCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc-EEEEEE
Confidence 34678999999995 55544 45789999999999985311 11 1223333332 2455 667999
Q ss_pred ccCCCCCH----------------HHHHHHHHHHHHhhhhhc----cCCceEEEEecccCCcCChhHHHHHHHHHHhhc
Q 010060 177 HLDKFKDV----------------KKLRKTKQRLKHRFWTEI----YDGAKLFYLSGLIHGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 177 KlDl~~~~----------------k~l~~~kk~Lk~~f~~e~----~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~ 235 (519)
|.|+.... ....+..+.+...|..-. .....++.+||+++ .++..+...+....
T Consensus 269 K~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~-----~nV~~vF~~v~~~i 342 (353)
T 1cip_A 269 KKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT-----KNVQFVFDAVTDVI 342 (353)
T ss_dssp CHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH-----HHHHHHHHHHHHHH
T ss_pred CcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc-----hhHHHHHHHHHHHH
Confidence 99986211 012333444433321110 13457788999865 67777776555443
No 240
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.89 E-value=0.0051 Score=59.30 Aligned_cols=65 Identities=9% Similarity=0.147 Sum_probs=48.1
Q ss_pred eeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 118 RRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 118 ~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
..+++||||+.+.. +...+..||.+|+|+.+...-......++..+...+.+.+-+|+|+.+...
T Consensus 111 yD~viiD~~~~~~~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 176 (263)
T 1hyq_A 111 TDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLG 176 (263)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTT
T ss_pred CCEEEEeCCCCCChHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccc
Confidence 56899999986654 667788999999999876332233446777777678777777899998653
No 241
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.85 E-value=0.0028 Score=59.83 Aligned_cols=106 Identities=11% Similarity=0.047 Sum_probs=67.1
Q ss_pred EEEEEC-CCCCChHHHHHHHHhccccC-ccc----cccccE-----------EEEe-------cCceeEEEEcCCCC-ch
Q 010060 76 VVVVQG-PPQVGKSLLIKSLIKHYTKH-NVP----EVRGPI-----------TIVS-------GKQRRLQFVECPND-IN 130 (519)
Q Consensus 76 ~VaVVG-~pnvGKSTLIn~Ll~~~Tr~-~v~----~~~G~i-----------ti~~-------~~~~rl~fIDtPGd-l~ 130 (519)
+|+|++ ..|+||||+.-.|.....+. .+. ++.+.. .++. .....+++||||+. +.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~~ 81 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQGETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPED 81 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCSS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcCCEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcCc
Confidence 566764 56999999988877653222 111 011110 1111 13467999999887 54
Q ss_pred h-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhc-CCCeEEEEEEccCCCC
Q 010060 131 G-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNH-GLPRVMGVLTHLDKFK 182 (519)
Q Consensus 131 s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~-GiP~VI~VlNKlDl~~ 182 (519)
. +...+..||.+|+++.++..--.....++..++.. +.+ +.+|+|+.+...
T Consensus 82 ~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 82 EDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYP 134 (209)
T ss_dssp SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTT
T ss_pred HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCcc
Confidence 4 66778899999999988643333344677777663 666 556899998653
No 242
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.84 E-value=0.004 Score=61.82 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=43.1
Q ss_pred ceeEEEEcCCCCch--hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHh----cCCCeEEEEEEccCC
Q 010060 117 QRRLQFVECPNDIN--GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQN----HGLPRVMGVLTHLDK 180 (519)
Q Consensus 117 ~~rl~fIDtPGdl~--smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~----~GiP~VI~VlNKlDl 180 (519)
...+++||||+.+. .+...+..||.+|+|+.++..--.....++..++. .+++.+-+|+|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGGGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999988654 35567889999999998753222233456666665 344434368999884
No 243
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.84 E-value=0.0012 Score=68.51 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=62.6
Q ss_pred CceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCCCC----c---ccH----HHHHHHHHh----cCCCeEEEEEEc
Q 010060 116 KQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSYGF----E---MET----FEFLNLMQN----HGLPRVMGVLTH 177 (519)
Q Consensus 116 ~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~g~----e---~et----~e~L~~L~~----~GiP~VI~VlNK 177 (519)
....+.+|||+|. +..++ .....++++|||+|.+..- + ... ..++..+.. .++| +|+|+||
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p-iILv~NK 277 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS-IILFLNK 277 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE-EEEEEEC
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC-EEEEEEC
Confidence 4678999999995 44433 3567899999999998621 1 111 223333322 2455 6679999
Q ss_pred cCCCCCH-----------------HHHHHHHHHHHHhhhh--hc--cCCceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 178 LDKFKDV-----------------KKLRKTKQRLKHRFWT--EI--YDGAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 178 lDl~~~~-----------------k~l~~~kk~Lk~~f~~--e~--~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
+|+.... ....+..+.+...|.. .. .....++.+||+++ .++..+...+...
T Consensus 278 ~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~-----~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 278 TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT-----ENIRLVFRDVKDT 350 (362)
T ss_dssp HHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH-----HHHHHHHHHHHHH
T ss_pred hhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc-----hhHHHHHHHHHHH
Confidence 9986211 1123333333333311 11 12356788999865 6676666555443
No 244
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.76 E-value=0.0062 Score=57.77 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=47.2
Q ss_pred eeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcC--CCeEEEEEEccCCC
Q 010060 118 RRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHG--LPRVMGVLTHLDKF 181 (519)
Q Consensus 118 ~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~G--iP~VI~VlNKlDl~ 181 (519)
..+++||||+.+.. +...+..||.+|+++.++..--.....++..++..+ .+.+-+|+|+.+.-
T Consensus 119 yD~viiD~p~~~~~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 119 YDYIIVDFGASIDHVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp CSEEEEEEESSCCTTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred CCEEEEeCCCCCchHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 56899999886654 566788999999999886332233457788887777 44566789999864
No 245
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.72 E-value=0.0021 Score=65.30 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=48.6
Q ss_pred HhhccCEEEEEEeCCCCCcccHH--HHHHHHHhcCCCeEEEEEEccCCCCCHH---HHHHHHHHHHHhhhhhccCCceEE
Q 010060 135 CAKIADLALLLIDGSYGFEMETF--EFLNLMQNHGLPRVMGVLTHLDKFKDVK---KLRKTKQRLKHRFWTEIYDGAKLF 209 (519)
Q Consensus 135 ~ak~ADlVLLVVDas~g~e~et~--e~L~~L~~~GiP~VI~VlNKlDl~~~~k---~l~~~kk~Lk~~f~~e~~~~~kVf 209 (519)
.+..+|.+|+|+|+..+.....+ .+|..+...|+|.+| |+||+|+..+.. .+..+.+. +.. .+.+++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vi-vlnK~DL~~~~~~~~~~~~~~~~----y~~---~g~~v~ 154 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPII-CITKMDLIEDQDTEDTIQAYAED----YRN---IGYDVY 154 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEE-EEECGGGCCCHHHHHHHHHHHHH----HHH---HTCCEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEE-EEECCccCchhhhHHHHHHHHHH----HHh---CCCeEE
Confidence 58899999999999855433322 455555667998765 899999987532 12333222 211 145788
Q ss_pred EEecccC
Q 010060 210 YLSGLIH 216 (519)
Q Consensus 210 ~lSAl~g 216 (519)
++||.++
T Consensus 155 ~~sa~~~ 161 (307)
T 1t9h_A 155 LTSSKDQ 161 (307)
T ss_dssp ECCHHHH
T ss_pred EEecCCC
Confidence 9998754
No 246
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.70 E-value=0.0094 Score=58.91 Aligned_cols=64 Identities=13% Similarity=0.085 Sum_probs=47.0
Q ss_pred eeEEEEcCCCCch--hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 118 RRLQFVECPNDIN--GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 118 ~rl~fIDtPGdl~--smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
..+++||||+.+. .....+..||.+|+|+.+...-......++..+...|.+.+-+|+|++|.-
T Consensus 192 yD~VIIDtpp~~~~~d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCSHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHHHHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 4689999997543 344556789999999998755444556778888888887654689998853
No 247
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.62 E-value=0.0072 Score=57.83 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=44.8
Q ss_pred ceeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCC--------CeEEEEEEccCC
Q 010060 117 QRRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGL--------PRVMGVLTHLDK 180 (519)
Q Consensus 117 ~~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~Gi--------P~VI~VlNKlDl 180 (519)
...+++||||+.+.. +...+..||.+|+|+.++..--.....++..+...+. ..+.+|+|+.+.
T Consensus 113 ~yD~viiD~p~~~~~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSSHHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCCHHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 568999999987664 6667789999999998863222233456666665442 355668999874
No 248
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.62 E-value=0.0095 Score=59.70 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=48.2
Q ss_pred eeEEEEcCCCCch--hHHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 118 RRLQFVECPNDIN--GMIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 118 ~rl~fIDtPGdl~--smld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
..+++||||+.+. ...-.+..||.+|+|+.+..........++..++..|++.+-+|+|++|.-
T Consensus 214 yD~VIIDtpp~~~~~d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTHHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHHHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 3589999998543 344456789999999998765555666788888888887555679998854
No 249
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.58 E-value=0.032 Score=54.10 Aligned_cols=154 Identities=12% Similarity=0.026 Sum_probs=83.4
Q ss_pred CCCCeEEEEECCC-CCChHHHHHHHHhccccCcc--------ccccccEEEEecCcee----------------------
Q 010060 71 EPPPFVVVVQGPP-QVGKSLLIKSLIKHYTKHNV--------PEVRGPITIVSGKQRR---------------------- 119 (519)
Q Consensus 71 ~~~p~~VaVVG~p-nvGKSTLIn~Ll~~~Tr~~v--------~~~~G~iti~~~~~~r---------------------- 119 (519)
...++++|+.||. ..=..+|+.+|+...+--++ ..+.++|++.....+.
T Consensus 13 ~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~ 92 (227)
T 3l82_B 13 IQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHT 92 (227)
T ss_dssp CCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-------------
T ss_pred cCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhh
Confidence 4566799999985 44556899999986422211 1233344443222111
Q ss_pred -----EEEEcCCCC--------chhHHH-HhhccCEEEEEEeCCCCCcccHH-HH---HHHHHh----cCCCeEEEEEEc
Q 010060 120 -----LQFVECPND--------INGMID-CAKIADLALLLIDGSYGFEMETF-EF---LNLMQN----HGLPRVMGVLTH 177 (519)
Q Consensus 120 -----l~fIDtPGd--------l~smld-~ak~ADlVLLVVDas~g~e~et~-e~---L~~L~~----~GiP~VI~VlNK 177 (519)
+....+||+ +..++. ++..+|.+|||||++..--.+.. |+ ..+|.. .|.|.+ +..||
T Consensus 93 ~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLL-VlANK 171 (227)
T 3l82_B 93 SAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL-VLSCI 171 (227)
T ss_dssp ------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEE-EEEEE
T ss_pred hhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEE-EEeCC
Confidence 223344532 445564 57899999999999754222222 34 444432 477744 46798
Q ss_pred c-CCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEecccCCcCChhHHHHHHHHHHhh
Q 010060 178 L-DKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVM 234 (519)
Q Consensus 178 l-Dl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~ 234 (519)
. |+.. .-...++.+.|. + ..+.....|+++||++| +++..-+.+|+..
T Consensus 172 qqDlp~-Ams~~EI~e~L~--L-~~l~R~W~Iq~csA~TG-----eGL~EGLdWL~~~ 220 (227)
T 3l82_B 172 SQGDVK-RMPCFYLAHELH--L-NLLNHPWLVQDTEAETL-----TGFLNGIEWILEE 220 (227)
T ss_dssp SSTTSC-BCCHHHHHHHTT--G-GGGCSCEEEEEEETTTC-----TTHHHHHHHHTTT
T ss_pred CcCccC-CCCHHHHHHHcC--C-cCCCCCEEEEEeECCCC-----cCHHHHHHHHHHH
Confidence 5 6643 112234444432 1 12235678999999988 6777777776654
No 250
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.55 E-value=0.022 Score=56.06 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=43.3
Q ss_pred eeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHh------cCCCeEEEEEEccCCC
Q 010060 118 RRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQN------HGLPRVMGVLTHLDKF 181 (519)
Q Consensus 118 ~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~------~GiP~VI~VlNKlDl~ 181 (519)
..+++||||+.+.. +..++..||.+|+++.+...--.....++..+.. .+++.+-+|+|+.|.-
T Consensus 155 yD~IiiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 155 YDLIIIDTVPTPSVYTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp CSEEEEEECSSCSHHHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCEEEEECCCCccHHHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 56899999987665 4556678999999998864332233344554443 3566454679999864
No 251
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.50 E-value=0.022 Score=55.03 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=44.6
Q ss_pred ceeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCC-eEEEEEEccCC
Q 010060 117 QRRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLP-RVMGVLTHLDK 180 (519)
Q Consensus 117 ~~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP-~VI~VlNKlDl 180 (519)
...+++||||+.+.. +..++..||.+|+++.++..--.....++..++..+.. .+.+|+|+...
T Consensus 144 ~yD~viiD~pp~~~~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSHHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCccHHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 356899999987655 56677789999999998643222334677777766532 35568999853
No 252
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.08 E-value=0.0024 Score=59.79 Aligned_cols=26 Identities=42% Similarity=0.629 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++..|+|+|++|+|||||++.|++.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44689999999999999999999864
No 253
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.00 E-value=0.0041 Score=57.39 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+..+|+|+|++|+|||||++.|.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999874
No 254
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.99 E-value=0.0039 Score=57.25 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+|+|+|++|+|||||++.|.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999864
No 255
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.94 E-value=0.0032 Score=58.06 Aligned_cols=25 Identities=40% Similarity=0.699 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
|.+|+|+|++|+|||||++.|++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999875
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.90 E-value=0.0048 Score=57.90 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=25.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.++.+|+|+|++|+|||||++.|.+...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5668999999999999999999998753
No 257
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.90 E-value=0.0045 Score=56.49 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.++.+|+|+|++|+|||||++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34578999999999999999999986
No 258
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.82 E-value=0.0053 Score=57.75 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+++.+|+|+||+|+|||||++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 356799999999999999999999875
No 259
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.79 E-value=0.028 Score=50.39 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
...++++|++|+|||||+++|.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45889999999999999999999764
No 260
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.71 E-value=0.0057 Score=57.30 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|++|+|||||++.|.+..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344689999999999999999999975
No 261
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.70 E-value=0.026 Score=58.44 Aligned_cols=84 Identities=12% Similarity=0.121 Sum_probs=48.1
Q ss_pred HhhccCEEEEEEeCCCCCcccH-HHHHHHHHhcCCCeEEEEEEccCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEec
Q 010060 135 CAKIADLALLLIDGSYGFEMET-FEFLNLMQNHGLPRVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSG 213 (519)
Q Consensus 135 ~ak~ADlVLLVVDas~g~e~et-~e~L~~L~~~GiP~VI~VlNKlDl~~~~k~l~~~kk~Lk~~f~~e~~~~~kVf~lSA 213 (519)
.+..+|.+++|......+.... ..+|..+...|+|.+ +|+||+|+..+. ....+.+ +...|.. .+.+++++||
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~i-ivlNK~DL~~~~-~~~~~~~-~~~~y~~---~G~~v~~~Sa 200 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPL-IVLNKIDLLDDE-GMDFVNE-QMDIYRN---IGYRVLMVSS 200 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTCEEE-EEEECGGGCCHH-HHHHHHH-HHHHHHT---TTCCEEECBT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEE-EEEECccCCCch-hHHHHHH-HHHHHHh---CCCcEEEEec
Confidence 3688999997754432222221 135555556789875 589999998643 2112222 2222322 3457999999
Q ss_pred ccCCcCChhHHHHHHH
Q 010060 214 LIHGKYSKREIRNLAR 229 (519)
Q Consensus 214 l~g~~Y~~~ei~~LlR 229 (519)
.++ .++.+|..
T Consensus 201 ~~~-----~gl~~L~~ 211 (358)
T 2rcn_A 201 HTQ-----DGLKPLEE 211 (358)
T ss_dssp TTT-----BTHHHHHH
T ss_pred CCC-----cCHHHHHH
Confidence 866 34555443
No 262
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.69 E-value=0.024 Score=59.57 Aligned_cols=65 Identities=11% Similarity=0.178 Sum_probs=42.7
Q ss_pred CceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCCC----Cc---ccHH----HHHHHHHh----cCCCeEEEEEEc
Q 010060 116 KQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSYG----FE---METF----EFLNLMQN----HGLPRVMGVLTH 177 (519)
Q Consensus 116 ~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~g----~e---~et~----e~L~~L~~----~GiP~VI~VlNK 177 (519)
....+.+|||.|. +.+++ .....|+.+|||+|.+.- ++ ...+ .++..+.. .++| +|+|+||
T Consensus 215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p-iiLvgNK 293 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS-VILFLNK 293 (402)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC-EEEEEEC
T ss_pred CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe-EEEEEEC
Confidence 4578999999996 45544 457899999999999851 01 1222 23333332 2455 6679999
Q ss_pred cCCC
Q 010060 178 LDKF 181 (519)
Q Consensus 178 lDl~ 181 (519)
+|+.
T Consensus 294 ~DL~ 297 (402)
T 1azs_C 294 QDLL 297 (402)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9985
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.63 E-value=0.0069 Score=55.77 Aligned_cols=26 Identities=27% Similarity=0.522 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++.+|+|+|++|+|||||++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45699999999999999999999875
No 264
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.60 E-value=0.0062 Score=56.46 Aligned_cols=23 Identities=30% Similarity=0.751 Sum_probs=21.5
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+++|+|++|+|||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999975
No 265
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.57 E-value=0.0056 Score=58.23 Aligned_cols=27 Identities=37% Similarity=0.680 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+..+|+|+|++|+|||||++.|.+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 445689999999999999999999975
No 266
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.55 E-value=0.017 Score=60.63 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=50.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCchhHHH----HhhccCEEEEEE
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDINGMID----CAKIADLALLLI 146 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl~smld----~ak~ADlVLLVV 146 (519)
.+.|.+|+|+|+||+|||||.+.|.....- .+++.. .-+.+..+.. .+.. ...+|+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~----------~~i~~D--------~~~~~~~~~~~~~~~l~~--g~~vIi 314 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGY----------VHVNRD--------TLGSWQRCVSSCQAALRQ--GKRVVI 314 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTC----------EECCGG--------GSCSHHHHHHHHHHHHHT--TCCEEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCc----------EEEccc--------hHHHHHHHHHHHHHHHhc--CCcEEE
Confidence 456789999999999999999999875411 111111 1122222222 2221 122458
Q ss_pred eCCCCCcccHHHHHHHHHhcCCCeEEEEE
Q 010060 147 DGSYGFEMETFEFLNLMQNHGLPRVMGVL 175 (519)
Q Consensus 147 Das~g~e~et~e~L~~L~~~GiP~VI~Vl 175 (519)
|++.....+-..++.+++..|.+.+++.+
T Consensus 315 D~~~~~~~~r~~~~~~~~~~~~~~~~v~l 343 (416)
T 3zvl_A 315 DNTNPDVPSRARYIQCAKDAGVPCRCFNF 343 (416)
T ss_dssp ESCCCSHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHHHcCCeEEEEEE
Confidence 88765444445677777778888655434
No 267
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.53 E-value=0.0028 Score=64.26 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+..+++|+|++|+|||||+|+|++..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34699999999999999999999864
No 268
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.52 E-value=0.0071 Score=56.29 Aligned_cols=27 Identities=33% Similarity=0.655 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++.+|+|+|++|+|||||++.|.+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999864
No 269
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.49 E-value=0.0078 Score=57.76 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
++..+++|+||+|+|||||++.|++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4557999999999999999999999753
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.47 E-value=0.0082 Score=55.83 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++.+|+|+|++|+|||||++.|.+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 356799999999999999999998864
No 271
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.45 E-value=0.028 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+..|.|.|++|+|||+|++.|....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998874
No 272
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.44 E-value=0.0081 Score=57.11 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++..|+|+||+|+|||||++.|++.+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999864
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.37 E-value=0.0098 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHh
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIK 96 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~ 96 (519)
|.+|+|+|+||+||||+.+.|..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 57899999999999999999987
No 274
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.26 E-value=0.0091 Score=55.70 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++.+|+|+|++|+|||||++.|....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456789999999999999999998764
No 275
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.20 E-value=0.012 Score=54.61 Aligned_cols=27 Identities=30% Similarity=0.253 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++.+|+|+|++|+|||||.+.|.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998865
No 276
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.17 E-value=0.027 Score=52.47 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.+..|.|.|++|+|||||++.|.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 346889999999999999999988653
No 277
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.15 Score=51.89 Aligned_cols=28 Identities=7% Similarity=0.137 Sum_probs=24.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.|..+.|.|+||+|||++++.++...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999999874
No 278
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.13 E-value=0.0097 Score=54.25 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
++-+++++|++|+|||||++.+...
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCG
T ss_pred CCEEEEEECCCCCCHHHHHHHHccC
Confidence 4568999999999999999986643
No 279
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.12 E-value=0.025 Score=52.11 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
|..|.|.|++|+|||+|+.+|.....
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999998753
No 280
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.11 E-value=0.14 Score=51.81 Aligned_cols=97 Identities=9% Similarity=-0.001 Sum_probs=57.4
Q ss_pred chhHHH-HhhccCEEEEEEeCCCCCcccHH----HHHHHHH----hcCCCeEEEEEEc-cCCCCCHHHHHHHHHHHHHhh
Q 010060 129 INGMID-CAKIADLALLLIDGSYGFEMETF----EFLNLMQ----NHGLPRVMGVLTH-LDKFKDVKKLRKTKQRLKHRF 198 (519)
Q Consensus 129 l~smld-~ak~ADlVLLVVDas~g~e~et~----e~L~~L~----~~GiP~VI~VlNK-lDl~~~~k~l~~~kk~Lk~~f 198 (519)
+..++. +...+|.+|||||++..--.+.. ++..++. ..|.|.+| ..|| -|+... -...++.+.|. +
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLV-fANKkQDlp~A-ms~~EI~e~L~--L 275 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV-LSCISQGDVKR-MPCFYLAHELH--L 275 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEE-EEEESSTTSCB-CCHHHHHHHTT--G
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEE-EeCCcccccCC-CCHHHHHHHcC--C
Confidence 455664 57899999999999754222222 2334442 25888544 5786 477531 12234444432 1
Q ss_pred hhhccCCceEEEEecccCCcCChhHHHHHHHHHHhhc
Q 010060 199 WTEIYDGAKLFYLSGLIHGKYSKREIRNLARFISVMK 235 (519)
Q Consensus 199 ~~e~~~~~kVf~lSAl~g~~Y~~~ei~~LlR~I~~~~ 235 (519)
..+.....|+++||++| +++.+-+.+|+...
T Consensus 276 -~~l~r~W~Iq~csA~tG-----eGL~EGldWL~~~l 306 (312)
T 3l2o_B 276 -NLLNHPWLVQDTEAETL-----TGFLNGIEWILEEV 306 (312)
T ss_dssp -GGGCSCEEEEEEETTTC-----TTHHHHHHHHHHHS
T ss_pred -ccCCCcEEEEecccCCC-----cCHHHHHHHHHHHH
Confidence 12234668999999988 57777676666553
No 281
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.09 E-value=0.012 Score=56.57 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.|.+|+|+|++|+|||||++.|...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999943
No 282
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=95.04 E-value=0.049 Score=53.60 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=26.9
Q ss_pred eeEEEEcCCCCchh-HHHHhhccCEEEEEEeCC
Q 010060 118 RRLQFVECPNDING-MIDCAKIADLALLLIDGS 149 (519)
Q Consensus 118 ~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas 149 (519)
..+++||||+.+.. +..++..||.+|+++.++
T Consensus 104 yD~viiD~p~~~~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 104 CDFILIDTPGGDSAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CSEEEEECCSSCCHHHHHHHHTCSEEEEEEESS
T ss_pred CCEEEEcCCCCccHHHHHHHHHCCEEEEEEcCC
Confidence 46999999987654 667889999999999886
No 283
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.04 E-value=0.014 Score=59.06 Aligned_cols=29 Identities=34% Similarity=0.529 Sum_probs=25.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
..++.+|+|+|++|+|||||++.|.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 35678999999999999999999998753
No 284
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.03 E-value=0.11 Score=50.06 Aligned_cols=65 Identities=9% Similarity=-0.049 Sum_probs=39.3
Q ss_pred ceeEEEEcCCCCchh--HHH--HhhccCEEEEEEeCCCCCcccHHHHHHHHHh----cCCCeEEEEEEccCCC
Q 010060 117 QRRLQFVECPNDING--MID--CAKIADLALLLIDGSYGFEMETFEFLNLMQN----HGLPRVMGVLTHLDKF 181 (519)
Q Consensus 117 ~~rl~fIDtPGdl~s--mld--~ak~ADlVLLVVDas~g~e~et~e~L~~L~~----~GiP~VI~VlNKlDl~ 181 (519)
...+++||||+.+.. +.. ....||.+|+++.++..--.....++..+.. .+++.+-+|+|+.+..
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 187 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA 187 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc
Confidence 357999999985432 111 1257999999998753221222344555543 2566555689998743
No 285
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.03 E-value=0.12 Score=50.45 Aligned_cols=64 Identities=8% Similarity=-0.010 Sum_probs=38.2
Q ss_pred ceeEEEEcCCCCch--hHH--HHhhccCEEEEEEeCCCCCcccHHHHHHHHHh----cCCCeEEEEEEccCC
Q 010060 117 QRRLQFVECPNDIN--GMI--DCAKIADLALLLIDGSYGFEMETFEFLNLMQN----HGLPRVMGVLTHLDK 180 (519)
Q Consensus 117 ~~rl~fIDtPGdl~--sml--d~ak~ADlVLLVVDas~g~e~et~e~L~~L~~----~GiP~VI~VlNKlDl 180 (519)
...+++||||+.+. .+. -.+..||.+|+++.+...--.....++..+.. .+++.+-+|+|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 45799999998643 111 12357999999998753211122244444443 366655567898863
No 286
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.02 E-value=0.022 Score=58.79 Aligned_cols=65 Identities=9% Similarity=0.055 Sum_probs=40.2
Q ss_pred CceeEEEEcCCCC--chhHH-HHhhccCEEEEEEeCCC-------CCcccHH----HHHHHHHh----cCCCeEEEEEEc
Q 010060 116 KQRRLQFVECPND--INGMI-DCAKIADLALLLIDGSY-------GFEMETF----EFLNLMQN----HGLPRVMGVLTH 177 (519)
Q Consensus 116 ~~~rl~fIDtPGd--l~sml-d~ak~ADlVLLVVDas~-------g~e~et~----e~L~~L~~----~GiP~VI~VlNK 177 (519)
....+.+|||+|. +.+++ .....|+.+|||+|.+. .-....+ ..+..+.. .++| +|+|+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe-EEEEEEC
Confidence 3567999999995 55544 35689999999999861 1111222 23333322 2455 6679999
Q ss_pred cCCC
Q 010060 178 LDKF 181 (519)
Q Consensus 178 lDl~ 181 (519)
+|+.
T Consensus 260 ~DL~ 263 (354)
T 2xtz_A 260 FDIF 263 (354)
T ss_dssp HHHH
T ss_pred cchh
Confidence 9985
No 287
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.01 E-value=0.015 Score=52.96 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+|+++|+.|+|||||++.|.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444689999999999999999999975
No 288
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.99 E-value=0.011 Score=61.12 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
..+++|+|++|+|||||+|.|++...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 45899999999999999999998653
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.98 E-value=0.012 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.+|+|+|++|+|||||.+.|.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998863
No 290
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.95 E-value=0.017 Score=51.96 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
++.+|+|+|++|+|||||++.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999875
No 291
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.93 E-value=0.013 Score=56.69 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.+.-+++|+|+.|+|||||++.|.+...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3446899999999999999999999753
No 292
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.91 E-value=0.042 Score=48.85 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+..|.|.|++|+|||+|+..|.....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45778999999999999999988753
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.86 E-value=0.016 Score=52.72 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..|.+|+|+|+||+||||+.+.|....
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356899999999999999999998753
No 294
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.85 E-value=0.015 Score=53.24 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.+|+|+|++|+|||||++.|.+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999863
No 295
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.82 E-value=0.012 Score=56.47 Aligned_cols=26 Identities=27% Similarity=0.120 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999975
No 296
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.81 E-value=0.018 Score=58.70 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=25.0
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...|.+|+|+|++|||||||++.|.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999998764
No 297
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.79 E-value=0.015 Score=53.88 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.+|+|+|++|+|||||.+.|.+..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 298
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.79 E-value=0.018 Score=55.39 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++.+|+|+|+.|+|||||++.|.+..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999998864
No 299
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.77 E-value=0.011 Score=56.09 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=17.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHH-hcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLI-KHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll-~~~ 98 (519)
.+..+|+|+|++|+|||||++.|. +..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345689999999999999999999 753
No 300
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.77 E-value=0.015 Score=56.52 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=22.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
-+++|+|+.|+|||||++.|.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999975
No 301
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.71 E-value=0.016 Score=51.03 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=18.9
Q ss_pred eEEEEECCCCCChHHHHHHH
Q 010060 75 FVVVVQGPPQVGKSLLIKSL 94 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~L 94 (519)
.+|+|+|++|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 302
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.67 E-value=0.017 Score=56.90 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|+.|+|||||++.|.+..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344689999999999999999999975
No 303
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.66 E-value=0.015 Score=56.99 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.-+++|+|+.|+|||||++.|.+...
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999999753
No 304
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.65 E-value=0.025 Score=51.57 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..++.+|+|+|++|+||||+++.|....
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999998864
No 305
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.64 E-value=0.016 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
-+++|+|+.|+|||||++.|.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999987
No 306
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.64 E-value=0.02 Score=56.32 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+|+|+|++|+|||||++.|++..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 345699999999999999999999975
No 307
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.63 E-value=0.017 Score=55.90 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.+.-+++|+|++|+|||||++.|.+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445899999999999999999999753
No 308
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.61 E-value=0.019 Score=55.64 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.+.-+++|+|+.|+|||||++.|.+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4556999999999999999999999753
No 309
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.60 E-value=0.021 Score=51.42 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.+|.|+|++|+||||+.+.|....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998864
No 310
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.58 E-value=0.016 Score=57.65 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34589999999999999999999975
No 311
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.57 E-value=0.015 Score=58.14 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...+++++|++|+|||||+|.|.+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 34689999999999999999999864
No 312
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.55 E-value=0.019 Score=58.16 Aligned_cols=27 Identities=41% Similarity=0.680 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++.-+|+|+|++|+|||||++.|.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455699999999999999999999986
No 313
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.54 E-value=0.017 Score=55.57 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.-+++|+|+.|+|||||++.|.+...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 445899999999999999999999753
No 314
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.54 E-value=0.021 Score=53.04 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=24.6
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
-.++.+|+|+|++|+|||||++.|.+..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3556899999999999999999999864
No 315
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.54 E-value=0.023 Score=51.48 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
|.+|+|+|+||+||||+.+.|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999999875
No 316
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.54 E-value=0.017 Score=57.13 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999999975
No 317
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.49 E-value=0.017 Score=55.93 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.-+++|+|+.|+|||||++.|.+...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999999753
No 318
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.49 E-value=0.1 Score=51.12 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.|...|.++|+||+|||||+++|.+...
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 3446899999999999999999998753
No 319
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.48 E-value=0.023 Score=52.75 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.+..+|+|+|++|+||||+.+.|.+.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999875
No 320
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.46 E-value=0.021 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+|+|+|++|+||||+.+.|....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998763
No 321
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.46 E-value=0.021 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.+|+|+|++|+||||+.+.|.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998754
No 322
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.45 E-value=0.02 Score=55.86 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
+.-+++|+|+.|+|||||++.|.+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999996
No 323
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.45 E-value=0.024 Score=52.55 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHh
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIK 96 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~ 96 (519)
+.+|+|+|++|+||||+.+.|.+
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 324
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.44 E-value=0.12 Score=49.96 Aligned_cols=27 Identities=30% Similarity=0.645 Sum_probs=23.8
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
..++..|.+.|+||+|||+|+.+|...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 356678999999999999999999886
No 325
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.44 E-value=0.018 Score=56.15 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.-+++|+|+.|+|||||++.|.+...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445899999999999999999999753
No 326
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.42 E-value=0.026 Score=51.93 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.+|+|.|++|+||||+.+.|....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998865
No 327
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.42 E-value=0.056 Score=50.88 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=48.9
Q ss_pred eeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCCC
Q 010060 118 RRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKFK 182 (519)
Q Consensus 118 ~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~~ 182 (519)
..+++||||+.+.. +...+..||.+|+|+.+...--.....++..+...|.+.+-+|+|+.+...
T Consensus 112 yD~viiD~~~~~~~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 112 FDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp CSEEEEECCSSSSHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred CCEEEEECCCCcCHHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 56899999986654 667889999999999886432233446777777778887777899998643
No 328
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.41 E-value=0.023 Score=51.31 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.+|+|.|++|+||||+.+.|....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 329
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.40 E-value=0.021 Score=56.15 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|+.|+|||||++.|.+..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344689999999999999999999975
No 330
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.40 E-value=0.05 Score=51.16 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=47.4
Q ss_pred ceeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccC
Q 010060 117 QRRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLD 179 (519)
Q Consensus 117 ~~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlD 179 (519)
...+++||||+.+.. +..++..||.+|+|+.++..--.....++..+...+++.+.+|+|+.+
T Consensus 131 ~yD~viiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEHLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTTCCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccHHHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 467999999986654 566778999999999886322223345666777778887888999988
No 331
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.39 E-value=0.021 Score=56.37 Aligned_cols=27 Identities=37% Similarity=0.374 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|+.|+|||||++.|.+..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 344689999999999999999999975
No 332
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.33 E-value=0.025 Score=55.84 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.+.-+++|+|+.|+|||||++.|.+.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34458999999999999999999996
No 333
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.32 E-value=0.017 Score=55.30 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.-+++|+|+.|+|||||++.|.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999999975
No 334
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.31 E-value=0.19 Score=50.94 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.+|+|+|++|+|||||++.|++...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4899999999999999999999853
No 335
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.30 E-value=0.023 Score=55.87 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|+.|+|||||++.|.+..
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344589999999999999999999975
No 336
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.30 E-value=0.021 Score=53.27 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++.-+++|+|++|+|||||++.|++..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999999854
No 337
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.29 E-value=0.025 Score=52.72 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++.+|+|+|++|+|||||++.|.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998864
No 338
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.28 E-value=0.022 Score=57.13 Aligned_cols=25 Identities=32% Similarity=0.592 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...+++++|++|+|||||+|.|. ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 34689999999999999999999 63
No 339
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.25 E-value=0.021 Score=55.86 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999999975
No 340
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.25 E-value=0.023 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHh
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIK 96 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~ 96 (519)
++.-+++|+|++|+|||||++.|++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4556999999999999999999984
No 341
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.25 E-value=0.023 Score=56.20 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.+.-+++|+|+.|+|||||++.|.+...
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3446899999999999999999999753
No 342
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.23 E-value=0.03 Score=56.06 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
..+|.+|+|+|++|+|||||++.|.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35678999999999999999999988753
No 343
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.20 E-value=0.02 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+..++++|++|+|||||+++|.+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 344
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.19 E-value=0.026 Score=56.55 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++.+|+|+|++|+|||||++.|.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 556899999999999999999999864
No 345
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.19 E-value=0.022 Score=56.69 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44589999999999999999999975
No 346
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.17 E-value=0.2 Score=45.26 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q 010060 77 VVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 77 VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
|.|.|++|+|||+|++.|....
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998764
No 347
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.13 E-value=0.079 Score=46.68 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
..|.+.|+||+|||+|.++|.....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999999987653
No 348
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.13 E-value=0.021 Score=57.72 Aligned_cols=28 Identities=29% Similarity=0.586 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.+.-+|+|+|++|+|||||++.|++.+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3446899999999999999999999764
No 349
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.11 E-value=0.023 Score=55.63 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.-+++|+|+.|+|||||++.|.+...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999999753
No 350
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.06 E-value=0.027 Score=55.50 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|+.|+|||||++.|.+..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344589999999999999999999975
No 351
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.02 E-value=0.029 Score=51.06 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
++.+|+|+|++|+||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999865
No 352
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.99 E-value=0.033 Score=51.11 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++.+|+|+|++|+||||+.+.|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998864
No 353
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.99 E-value=0.025 Score=52.99 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|+|+|++|+|||||++.|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999999875
No 354
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.98 E-value=0.031 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
+.+|+|+|++|+||||+.+.|...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.96 E-value=0.036 Score=51.18 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.1
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...|.+|+|+|+||+||||+.+.|....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999998753
No 356
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.94 E-value=0.13 Score=50.24 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++..|.+.|+||+|||+|+++|....
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455689999999999999999888764
No 357
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.90 E-value=0.034 Score=52.20 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++.+|+|+|+||+||||+.+.|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998754
No 358
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.89 E-value=0.032 Score=51.58 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.|.+|+|+|++|+||||+.+.|....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998764
No 359
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.89 E-value=0.031 Score=50.41 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+|+|+|++|+||||+.+.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998865
No 360
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.88 E-value=0.036 Score=50.68 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
..|.+|+|+|++|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45789999999999999999999874
No 361
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.83 E-value=0.037 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...|+|+|++|+|||||++.|++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999864
No 362
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.80 E-value=0.058 Score=57.56 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHh
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIK 96 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~ 96 (519)
..|-.+|+|+|++++|||+|+|.|++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHHH
Confidence 34567899999999999999997763
No 363
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.78 E-value=0.036 Score=50.24 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
+.+|+++|++|+||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 364
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.75 E-value=0.044 Score=50.48 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+.+|+|+|++|+||||+.+.|....
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456799999999999999999998753
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.74 E-value=0.04 Score=54.75 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=24.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...|..|+|+|+||+|||||.+.|....
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999998754
No 366
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.72 E-value=0.042 Score=52.99 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+|.+|+|+|+||+||||+.+.|...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998753
No 367
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.70 E-value=0.037 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|+|+|++|+||||+.+.|....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998864
No 368
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.65 E-value=0.032 Score=55.05 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.-+++|+|+.|+|||||++.|.+..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999975
No 369
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.64 E-value=0.031 Score=52.46 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHHhc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
-|+|+||+|+|||||++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999875
No 370
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.64 E-value=0.039 Score=52.52 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=24.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
..++.+|+|+|+.|+|||||++.|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 456689999999999999999999886
No 371
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.64 E-value=0.035 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.+|+|.|++|+||||+.+.|....
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998764
No 372
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.63 E-value=0.23 Score=53.18 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+++..|.|.|+||+|||||+++|....
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998864
No 373
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.60 E-value=0.034 Score=51.35 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=20.5
Q ss_pred eEEEEECCCCCChHHHHHHHHh
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIK 96 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~ 96 (519)
.+|+|+|++|+|||||.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 374
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.60 E-value=0.035 Score=50.61 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
+.+|+|+|++|+||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999875
No 375
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.58 E-value=0.045 Score=52.63 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.6
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...|++|.|+|+||+||+|+...|...+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999875
No 376
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.57 E-value=0.55 Score=44.45 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=24.2
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+|..|.+.|+||+|||+|+++|....
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4566789999999999999999998864
No 377
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.55 E-value=0.13 Score=50.21 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++..|.+.|+||+|||||+++|.+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998864
No 378
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.54 E-value=0.19 Score=51.83 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
++..++.|+|+|++|||||+..|+....
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457999999999999999999987653
No 379
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.54 E-value=0.049 Score=49.32 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=23.0
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++.+|+|+|++|+||||+.+.|....
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998754
No 380
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.49 E-value=0.044 Score=56.48 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+..+|+|+|++|+|||||+++|++..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44699999999999999999999874
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.48 E-value=0.041 Score=49.61 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.|.+|+|+|++|+||||+.+.|...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999865
No 382
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.44 E-value=0.043 Score=56.95 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|++|+|||||++.|.+..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 344689999999999999999999975
No 383
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.43 E-value=0.076 Score=56.39 Aligned_cols=29 Identities=41% Similarity=0.694 Sum_probs=26.4
Q ss_pred CCCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 70 GEPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 70 ~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+-.||+-|.+.||||+|||+|+++|.+..
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45788999999999999999999999875
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.42 E-value=0.034 Score=52.27 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.|.+|+|+|++|+||||+.+.|....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 385
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.41 E-value=0.035 Score=57.49 Aligned_cols=26 Identities=23% Similarity=0.430 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|++|||||||++.|.+..
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34589999999999999999999975
No 386
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.41 E-value=0.044 Score=56.64 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.6
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.+..+|+|+|++|+|||||++.|++...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4557899999999999999999999753
No 387
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.39 E-value=0.036 Score=55.49 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|+.|+|||||++.|.+..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345689999999999999999999975
No 388
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.37 E-value=0.04 Score=52.07 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.+|+|+|++|+||||+.+.|....
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998753
No 389
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.36 E-value=0.036 Score=49.93 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=18.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.|.+|+|.|++|+||||+.+.|....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998653
No 390
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.34 E-value=0.12 Score=51.99 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=24.7
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+|..|.+.|+||+|||+|+++|....
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566899999999999999999999875
No 391
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.33 E-value=0.041 Score=56.84 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|++|||||||++.|.+..
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999999975
No 392
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.32 E-value=0.051 Score=52.85 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.+.+|+|+|+||+||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999875
No 393
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.30 E-value=0.051 Score=49.76 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=22.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
+.+.+|+|+|++|+||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999875
No 394
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.27 E-value=0.047 Score=56.09 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.9
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.+|+|+|++|+|||||++.|++...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 5899999999999999999999764
No 395
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.26 E-value=0.043 Score=57.26 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.-+++|+|++|||||||++.|.+...
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 345899999999999999999999753
No 396
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.25 E-value=0.05 Score=52.72 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
+..+|+|+|++|+|||||++.|...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4469999999999999999999853
No 397
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.25 E-value=0.04 Score=53.34 Aligned_cols=28 Identities=18% Similarity=0.428 Sum_probs=24.6
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...|.+|+++|+||+||||+.+.|....
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4567899999999999999999998865
No 398
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.19 E-value=0.022 Score=52.66 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=23.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhcccc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTK 100 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr 100 (519)
..|+|+|++|+|||||++.|++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47999999999999999999998754
No 399
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.17 E-value=0.058 Score=50.40 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++.+|+|+|++|+||||+.+.|.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999998865
No 400
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.17 E-value=0.045 Score=56.84 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.-+++|+|++|||||||++.|.+...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 345899999999999999999999753
No 401
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.12 E-value=0.051 Score=56.18 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|++|||||||++.|.+..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 44589999999999999999999975
No 402
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.12 E-value=0.064 Score=50.13 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHh
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIK 96 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~ 96 (519)
.|.+|+|.|++|+||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999999865
No 403
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.08 E-value=0.053 Score=56.12 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.-+++|+|++|||||||++.|.+...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 445899999999999999999999753
No 404
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.01 E-value=0.058 Score=53.21 Aligned_cols=25 Identities=40% Similarity=0.703 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
|.-|+++|+||+|||||+++|.+..
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3449999999999999999999864
No 405
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.95 E-value=0.4 Score=50.15 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHh
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIK 96 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~ 96 (519)
++.-+++|+|++|+|||||+..|+-
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3456999999999999999997753
No 406
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.93 E-value=0.1 Score=55.25 Aligned_cols=29 Identities=38% Similarity=0.726 Sum_probs=26.3
Q ss_pred CCCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 70 GEPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 70 ~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+-.+|+-|.+.||||+|||+|+++|.+..
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45788999999999999999999999875
No 407
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.87 E-value=0.25 Score=49.29 Aligned_cols=27 Identities=15% Similarity=0.328 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+..|.|.|++|+|||||++.+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 445688999999999999999999864
No 408
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.87 E-value=0.053 Score=49.06 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.+|+|+|++|+||||+.+.|....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998653
No 409
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.87 E-value=0.059 Score=55.96 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|++|||||||++.|.+..
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44589999999999999999999975
No 410
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.84 E-value=0.062 Score=49.76 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+|+|+|++|+|||||+..|+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999874
No 411
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.83 E-value=0.055 Score=50.13 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++.-+++|+|++|+|||||++.|++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344689999999999999999999764
No 412
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.81 E-value=0.023 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=21.3
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|+|+|++|+|||||++.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 413
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.81 E-value=0.065 Score=51.32 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.-|+|+|+||+|||||+++|.+..
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999999864
No 414
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.65 E-value=0.096 Score=55.61 Aligned_cols=65 Identities=25% Similarity=0.438 Sum_probs=39.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCC----C----CchhHHHHhhccCEEEEEE
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECP----N----DINGMIDCAKIADLALLLI 146 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtP----G----dl~smld~ak~ADlVLLVV 146 (519)
..+.++|+||+|||+|++.|........+.... .+..+..+||. | .+..+++.+..+.-+|+++
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l--------~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfi 273 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL--------RDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFI 273 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT--------SSCCEECC----------CTTHHHHHHHHHTCCCCEEEE
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhh--------cCCeEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEE
Confidence 467899999999999999999875332222110 12233334433 2 2345666666666778889
Q ss_pred e
Q 010060 147 D 147 (519)
Q Consensus 147 D 147 (519)
|
T Consensus 274 D 274 (468)
T 3pxg_A 274 D 274 (468)
T ss_dssp C
T ss_pred e
Confidence 9
No 415
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.65 E-value=0.074 Score=57.79 Aligned_cols=28 Identities=25% Similarity=0.282 Sum_probs=24.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+.-+++|+|+.|+|||||++.|.+..
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445799999999999999999999964
No 416
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.54 E-value=0.065 Score=48.44 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
+.+.+|+|+.|+|||||+.+|...
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999875
No 417
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.50 E-value=0.052 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
...++|+|++|+|||||++.|.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999753
No 418
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.49 E-value=0.061 Score=54.29 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++..++++|+||+|||||++.|.+..
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 44578999999999999999999874
No 419
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.47 E-value=0.068 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.6
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|+|+|+||+||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997754
No 420
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.46 E-value=0.087 Score=50.51 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.++..|+|.|++|+||||+++.|.....
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3568999999999999999999998753
No 421
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.45 E-value=0.057 Score=56.43 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|++|||||||++.|.+..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 344689999999999999999999975
No 422
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.43 E-value=0.073 Score=48.09 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.8
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|+|.|++|+||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 423
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.42 E-value=0.071 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.|+|.|++|+||||+++.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 424
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.41 E-value=0.12 Score=54.93 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=26.9
Q ss_pred CCCCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 69 YGEPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 69 ~~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+-++|+-|.+.||||+|||+|+++|.+..
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 356788999999999999999999999875
No 425
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.41 E-value=0.076 Score=55.96 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+|+|+|++|+|||||+++|++..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999999975
No 426
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.38 E-value=0.058 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++..|+|+|+||+||||+.+.|....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 427
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.34 E-value=0.059 Score=48.80 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.6
Q ss_pred eEEEEECCCCCChHHHHHHHHhc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.+|+|+|+||+||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 428
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.32 E-value=0.052 Score=55.89 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|++|||||||++.|.+..
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34589999999999999999999975
No 429
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.32 E-value=0.22 Score=50.68 Aligned_cols=27 Identities=33% Similarity=0.563 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++..|.+.|+||+|||+|+++|....
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 456778999999999999999999875
No 430
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.29 E-value=0.086 Score=50.78 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..|.+|+|.|++|+||||+.+.|....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999997753
No 431
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.27 E-value=0.075 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.7
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|+|+|+||+||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 432
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.21 E-value=0.079 Score=55.09 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.3
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
-+++..|+|+|++|+|||||++.|.+..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3566799999999999999999999853
No 433
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.21 E-value=0.15 Score=48.79 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=23.4
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...|..|.++|+||+|||||+++|.+..
T Consensus 42 ~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3455679999999999999999998864
No 434
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.20 E-value=0.085 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
|.+|+|+|+||+||||+.+.|...
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999874
No 435
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.11 E-value=0.085 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.4
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+|+|+|++|+|||||.+.|....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998753
No 436
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.05 E-value=0.13 Score=54.16 Aligned_cols=29 Identities=38% Similarity=0.694 Sum_probs=26.3
Q ss_pred CCCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 70 GEPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 70 ~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+-.+|+-|.+.||||+|||+|+++|.+..
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 46778899999999999999999999875
No 437
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.05 E-value=0.087 Score=52.03 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.8
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHh
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIK 96 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~ 96 (519)
.+.|.+|+|.|++|+||||+.+.|..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999973
No 438
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.02 E-value=0.075 Score=47.88 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEEEECCCCCChHHHHHHHHhc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
+|+|+|++|+||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 439
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.01 E-value=0.31 Score=47.05 Aligned_cols=64 Identities=5% Similarity=-0.098 Sum_probs=45.3
Q ss_pred ceeEEEEcCCCCchh-HHH--HhhccCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCC
Q 010060 117 QRRLQFVECPNDING-MID--CAKIADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDK 180 (519)
Q Consensus 117 ~~rl~fIDtPGdl~s-mld--~ak~ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl 180 (519)
...+++||||+.+.. .+. .+..||.+|+|+.+...--.....++..++..+++.+-+|+|+.|.
T Consensus 128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 456899999986553 222 2337999999998865443445577777888888865468999874
No 440
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.00 E-value=0.27 Score=56.03 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..++++|+||+|||||+..|....
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999875
No 441
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.98 E-value=0.096 Score=49.75 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+.+|+|+|++|+||||+.+.|....
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998764
No 442
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.96 E-value=0.048 Score=56.19 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|++|||||||++.|.+..
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999999975
No 443
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.94 E-value=0.097 Score=48.32 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHh
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIK 96 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~ 96 (519)
++.-+++|+|++|+|||||+..|+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999988
No 444
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.94 E-value=0.097 Score=51.02 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.5
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.-|+|+|++|+|||||+++|.+..
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 349999999999999999999865
No 445
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.92 E-value=0.11 Score=56.57 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.-.++|+|++|+|||||++.|.+.+.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445899999999999999999999864
No 446
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.82 E-value=0.087 Score=51.78 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.+.-+++|+|+||+|||||++.|.+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4456999999999999999999998753
No 447
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.80 E-value=0.085 Score=46.98 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.+|+|+|++|+||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 448
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.79 E-value=0.095 Score=50.92 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.|.+|+|+|++|+|||||.+.|....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998753
No 449
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.71 E-value=0.077 Score=53.39 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+++|+|+.|+|||||++.|++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3588999999999999999999763
No 450
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.66 E-value=0.068 Score=57.72 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=22.1
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+|+|+|++|+|||||+++|++..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 469999999999999999999875
No 451
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.65 E-value=0.1 Score=51.66 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=25.3
Q ss_pred CCCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 70 GEPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 70 ~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
...+|+.|.+.|+||+|||+|+++|....
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44667889999999999999999999875
No 452
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.61 E-value=0.094 Score=49.21 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=23.5
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++.-+++|+|++|+|||||+..|+...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 345699999999999999999999853
No 453
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.58 E-value=0.2 Score=52.72 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++..|.+.|+||+|||+|+++|....
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 466889999999999999999999875
No 454
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.56 E-value=0.34 Score=47.58 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=44.6
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCC--chhHHHHhh--ccCEEEEEEeC
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPND--INGMIDCAK--IADLALLLIDG 148 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGd--l~smld~ak--~ADlVLLVVDa 148 (519)
++..|.|.|++|+|||+|+++|..... ..+..+.|+.. ...+...+. .++..++++|-
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~------------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDE 98 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELG------------------VNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDE 98 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHT------------------CCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhC------------------CCEEEEeccccCChHHHHHHHHHhccCCCEEEEEC
Confidence 345788999999999999999987541 12334444431 112223332 25556777776
Q ss_pred CCCCcccHH-HHHHHHHhc
Q 010060 149 SYGFEMETF-EFLNLMQNH 166 (519)
Q Consensus 149 s~g~e~et~-e~L~~L~~~ 166 (519)
-..+..... .++..+...
T Consensus 99 i~~l~~~~~~~L~~~l~~~ 117 (324)
T 1hqc_A 99 IHRLSRQAEEHLYPAMEDF 117 (324)
T ss_dssp TTSCCHHHHHHHHHHHHHS
T ss_pred CcccccchHHHHHHHHHhh
Confidence 555544333 455666543
No 455
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.53 E-value=0.11 Score=46.04 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=20.3
Q ss_pred EEEEECCCCCChHHHHHHHHhc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
+|+|.|++|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 456
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.49 E-value=0.11 Score=56.72 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.-.++|+|++|+|||||++.|.+.+.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 345899999999999999999999864
No 457
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.43 E-value=0.76 Score=44.01 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=41.6
Q ss_pred ceeEEEEcCCCCchh-HHHHhhccCEEEEEEeCCCCCcccHHHHHHHHHh------cCCCeEEEEEEccCCC
Q 010060 117 QRRLQFVECPNDING-MIDCAKIADLALLLIDGSYGFEMETFEFLNLMQN------HGLPRVMGVLTHLDKF 181 (519)
Q Consensus 117 ~~rl~fIDtPGdl~s-mld~ak~ADlVLLVVDas~g~e~et~e~L~~L~~------~GiP~VI~VlNKlDl~ 181 (519)
...+++||||+.+.. +..++..||.+|+++.++..--.....++..+.. .+++.+-+|+|+.+..
T Consensus 111 ~yD~iiiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TCSEEEEECCSSCCHHHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 357999999987654 4566788999999999863221222234444432 2455333579999864
No 458
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.40 E-value=0.11 Score=56.86 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcccc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHYTK 100 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr 100 (519)
++.-.++|+|++|+|||||++.|.+.+..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 34468999999999999999999998643
No 459
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.34 E-value=0.13 Score=51.56 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+..|.+.|+||+|||+|+.+|.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999988654
No 460
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.28 E-value=0.1 Score=56.63 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|+.|+|||||++.|.+..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344699999999999999999999964
No 461
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.24 E-value=0.11 Score=49.34 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=21.1
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|+|+|+||+||+|+...|...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999875
No 462
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.22 E-value=0.1 Score=55.99 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=22.3
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
-+++|+|++|+|||||++.|.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 789999999999999999999864
No 463
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.16 E-value=0.15 Score=45.63 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
..+.+.+|+|+.|+|||||+.+|.-.
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34568899999999999999998753
No 464
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.13 E-value=0.12 Score=48.86 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|+|+|++|+||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 465
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.03 E-value=0.091 Score=56.01 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+|+|+|+.|+|||||++.|++..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 33589999999999999999999974
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.98 E-value=0.14 Score=48.66 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.9
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.++.+|+|+|++|+||||+.+.|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999874
No 467
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.94 E-value=0.11 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEECCCCCChHHHHHHHHhcc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+|+|+|+||+||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 468
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.92 E-value=0.092 Score=57.25 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK 100 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr 100 (519)
+.-.++|+|++|+|||||++.|.+.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 4458999999999999999999998643
No 469
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.89 E-value=0.2 Score=53.54 Aligned_cols=29 Identities=31% Similarity=0.631 Sum_probs=26.3
Q ss_pred CCCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 70 GEPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 70 ~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+-.+|+-|.+.||||+|||+|+++|.+..
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 45788999999999999999999999875
No 470
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.87 E-value=0.16 Score=52.07 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.++..|.|.|+||+|||+|+++|....
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999997763
No 471
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.84 E-value=1.3 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.7
Q ss_pred eEEEEECCCCCChHHHHHHHHhcc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..|.++|+||+|||+|.++|....
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998874
No 472
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.82 E-value=0.26 Score=52.26 Aligned_cols=30 Identities=37% Similarity=0.619 Sum_probs=26.8
Q ss_pred CCCCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 69 YGEPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 69 ~~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+-++|+-|.+.||||+|||+|+++|.+..
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 345788999999999999999999999985
No 473
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.70 E-value=2 Score=47.91 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.|...|.++|+||+|||+|+++|....
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 344589999999999999999998865
No 474
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.69 E-value=0.12 Score=56.92 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+.-+++|+|+.|+|||||++.|.+..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345699999999999999999999964
No 475
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.58 E-value=0.16 Score=46.44 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+..|.|.|++|+|||||++.|....
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999999999999999998764
No 476
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.57 E-value=0.11 Score=56.68 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+.-.++|+|++|+|||||++.|.+.+.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 345899999999999999999999864
No 477
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.56 E-value=0.16 Score=45.32 Aligned_cols=23 Identities=30% Similarity=0.151 Sum_probs=20.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
-+|+|.|.+|+||||+.+.|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998775
No 478
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.50 E-value=0.12 Score=56.50 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcccc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHYTK 100 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~Tr 100 (519)
+.-.|+|+|++|+|||||++.|.+.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 3458999999999999999999998643
No 479
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.49 E-value=0.15 Score=50.46 Aligned_cols=28 Identities=36% Similarity=0.589 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
-.++..|.+.|+||+|||+|+++|....
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 3566789999999999999999999864
No 480
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.41 E-value=0.63 Score=46.30 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
+..|.|.|+||+|||+|+++|.....
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCc
Confidence 34678999999999999999988653
No 481
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.41 E-value=0.16 Score=49.19 Aligned_cols=28 Identities=36% Similarity=0.638 Sum_probs=24.0
Q ss_pred CCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 71 EPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 71 ~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..++..|.|.|+||+|||+|+++|....
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3556789999999999999999998764
No 482
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.36 E-value=0.13 Score=52.75 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
.-+++|+|++|+|||||++.|++...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999999853
No 483
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.30 E-value=0.29 Score=53.03 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++..|+++|+||+|||||+++|.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999875
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.27 E-value=0.14 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+|+|+|+.|+|||||++.|.+..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999974
No 485
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.27 E-value=0.68 Score=45.89 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
++..|.|.|+||+|||+|+++|....
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 44568999999999999999997663
No 486
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.27 E-value=0.13 Score=55.86 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999975
No 487
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.08 E-value=0.74 Score=42.46 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.8
Q ss_pred eEEEEECCCCCChHHHHHHHHhc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
.++.+.|++|+||||++-.++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999998555544
No 488
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.03 E-value=0.39 Score=53.63 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+..+.++|+||+|||+|++.|....
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999864
No 489
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.01 E-value=0.72 Score=44.19 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.6
Q ss_pred eEEEEECCCCCChHHHHHHHHhccc
Q 010060 75 FVVVVQGPPQVGKSLLIKSLIKHYT 99 (519)
Q Consensus 75 ~~VaVVG~pnvGKSTLIn~Ll~~~T 99 (519)
..|.|.|+||+|||+|+++|.....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4578999999999999999988653
No 490
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.00 E-value=14 Score=37.26 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=32.1
Q ss_pred cCEEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 139 ADLALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 139 ADlVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
.+.+++|.-+..-.-.+....+..|+..|+|..-+|+|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 4678888766543344566788888999999877789998754
No 491
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.95 E-value=0.18 Score=47.96 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCChHHHHHHHHhcc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
|..|+|.|.+|+||||+++.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999998865
No 492
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.88 E-value=0.13 Score=49.84 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 72 PPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 72 ~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
..+..|+|.|.+|+||||+++.|....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999998764
No 493
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.84 E-value=0.18 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
++..++|+|++|+|||||+++|+..
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999854
No 494
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.80 E-value=0.32 Score=49.89 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=32.7
Q ss_pred CeEEEEECCCCCChHHHHHHHHhccccCccccccccEEEEecCceeEEEEcCCCCchhHHHH
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKHYTKHNVPEVRGPITIVSGKQRRLQFVECPNDINGMIDC 135 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~~Tr~~v~~~~G~iti~~~~~~rl~fIDtPGdl~smld~ 135 (519)
...++|+|++|+|||||++.|+...... +.++.++|.-+++..+...
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~---------------~~~~~~~D~~~~~~~~~~~ 81 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQ---------------GSRVIIIDPEREYKEMCRK 81 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTT---------------TCCEEEEESSCCSHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHC---------------CCEEEEEeCCcCHHHHHHH
Confidence 3578999999999999999999875321 2245666765655544433
No 495
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.76 E-value=0.16 Score=49.65 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCChHHHHHHHHhc
Q 010060 74 PFVVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 74 p~~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
..+|+|+|++|+|||||.+.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999874
No 496
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.63 E-value=0.17 Score=55.77 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999974
No 497
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.61 E-value=0.27 Score=55.10 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 73 PPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 73 ~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
.+..|.++|+||+|||++++.|....
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 33568999999999999999998875
No 498
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.53 E-value=0.55 Score=53.49 Aligned_cols=36 Identities=28% Similarity=0.645 Sum_probs=29.1
Q ss_pred CccCCcCCCCCCeEEEEECCCCCChHHHHHHHHhcc
Q 010060 63 PTIDRSYGEPPPFVVVVQGPPQVGKSLLIKSLIKHY 98 (519)
Q Consensus 63 ~~~~R~~~~~~p~~VaVVG~pnvGKSTLIn~Ll~~~ 98 (519)
|..-+..+-.+|+-|.+.||||+|||+|+++|.+..
T Consensus 227 p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 227 PALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred HHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 333344456788999999999999999999999875
No 499
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.52 E-value=0.2 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEECCCCCChHHHHHHHHhc
Q 010060 76 VVVVQGPPQVGKSLLIKSLIKH 97 (519)
Q Consensus 76 ~VaVVG~pnvGKSTLIn~Ll~~ 97 (519)
+|+|.|++|+||||+.+.|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999775
No 500
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.46 E-value=2.2 Score=46.25 Aligned_cols=41 Identities=12% Similarity=-0.107 Sum_probs=30.8
Q ss_pred EEEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEEEEccCCC
Q 010060 141 LALLLIDGSYGFEMETFEFLNLMQNHGLPRVMGVLTHLDKF 181 (519)
Q Consensus 141 lVLLVVDas~g~e~et~e~L~~L~~~GiP~VI~VlNKlDl~ 181 (519)
.+++|+.+...--.+...++..|+..|++..-+|+|++...
T Consensus 200 ~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 68888887644444566788888888998776789998753
Done!