BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010061
(519 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV-SNEVPQLIHRPG 62
+ GI LLK G +VYSTCSM ENE V+ IL+K VEL+ + +NE + + G
Sbjct: 193 LIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK-RNDVELIIIKANEFKGINIKEG 251
Query: 63 LRKWKVR 69
K +R
Sbjct: 252 YIKGTLR 258
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 8 GISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGL 63
G+ +LK GG +VYSTCS+ P ENE V+ L + VEL+ + P L + G+
Sbjct: 232 GLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD--VELLPLKYGEPALTNPFGI 285
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 11 LLKVGGRIVYSTCSMNPVENEAVVAEILR 39
LL GG +VYSTC+ P ENE VVA L+
Sbjct: 218 LLGPGGVLVYSTCTFAPEENEGVVAHFLK 246
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 11 LLKVGGRIVYSTCSMNPVENEAVVAEILR 39
LL GG +VYSTC+ P ENE VVA L+
Sbjct: 218 LLGPGGVLVYSTCTFAPEENEGVVAHFLK 246
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 11 LLKVGGRIVYSTCSMNPVENEAVVAEILR 39
LL GG +VYSTC+ P ENE VVA L+
Sbjct: 218 LLGPGGVLVYSTCTFAPEENEGVVAHFLK 246
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 7/47 (14%)
Query: 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 48
V + AG+ K GG +VYSTCS++ ++NE VV +G++EL+
Sbjct: 264 VQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVV-------QGAIELL 303
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 7/47 (14%)
Query: 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 48
V + AG+ K GG +VYSTCS++ ++NE VV +G++EL+
Sbjct: 265 VQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVV-------QGAIELL 304
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 5 VTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPG-- 62
+++ I LK G+++YSTC+ P ENE +++ ++ ++E + ++ V G
Sbjct: 217 LSSAIKXLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSV 276
Query: 63 ------LRKWKVRDKG 72
+R W +D+G
Sbjct: 277 AGLEKTIRIWPHKDQG 292
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 17 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHR 60
R+VYSTCS+ ENE VV + L++ G+ L +P HR
Sbjct: 229 RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPA---LPAWPHR 269
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 12 LKVGGRIVYSTCSMNPVENEAVVAEILRK 40
LK GG +VY+TCS+ P EN + L++
Sbjct: 364 LKTGGTLVYATCSVLPEENSLQIKAFLQR 392
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEIL 38
+ + L+K GGR++Y+TCS+ ENE + L
Sbjct: 371 LLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFL 405
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,950,823
Number of Sequences: 62578
Number of extensions: 625323
Number of successful extensions: 1015
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1000
Number of HSP's gapped (non-prelim): 23
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)