BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010061
(519 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus tropicalis
GN=nsun2 PE=2 SV=1
Length = 798
Score = 182 bits (462), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 153/531 (28%), Positives = 254/531 (47%), Gaps = 97/531 (18%)
Query: 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRP 61
+ T G+ L GGR+VYSTCS+NPVE+EAV+A +L K EGS+EL DV++E+P L P
Sbjct: 302 IRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVIASLLDKSEGSLELADVASEIPGLKWMP 361
Query: 62 GLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDE 120
G+ +WKV K G W + + R I P+MFP PK
Sbjct: 362 GITQWKVMTKEGHWYEKWEDIPTSRHTQIRPTMFP------------PKD---------- 399
Query: 121 GLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHIN 180
EE++ + L RCMR++PH QN+G FF+AVL K +P+P N
Sbjct: 400 ---------------EEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMP------WN 438
Query: 181 PEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPD 240
+ L R PP V D + PE L +N G A EP
Sbjct: 439 KRQPKLQRR--PP---------------VSACDASIAVAPE--LVKAVTENSAGMADEP- 478
Query: 241 PLTCEKVDSEETEV-PVNTETKSERTG------GKRKLQIQGKWKGIDPVIFFN-DETII 292
VD+E E P ++ S +T +K+++ G + DP +F + D+ I
Sbjct: 479 -----AVDTENGETKPCTNQSDSSKTDIVCCPPPSKKMKLFGFKE--DPFVFVSEDDPIF 531
Query: 293 NSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGL 352
+ I+TFY +D SF L++R + + +++Y VSK +++ L N +++K+ + G+
Sbjct: 532 DPIQTFYALDPSFP-KKNLLTRTQEGKK-RQLYMVSKELRNVLLHN---SEKMKVINTGI 586
Query: 353 KMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVD 412
K+ R + +G C++R++ EG+ + P+I +I+ S+ D K LL + + F
Sbjct: 587 KVLCR--NNDGEQYGCAYRLAQEGIYTLYPFINARIVTVSIEDIKVLLTQENPFLSKF-S 643
Query: 413 AEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQEL 472
E ++A+ MG V+ + P + + G W+G+ S+ V +
Sbjct: 644 KETQKQANNFDMGSIVLKYEPDPQ---EPETLQCPIVLCG-WRGKTSIRSFVPKNERLHY 699
Query: 473 LERLLMRLEIEKGDLVQE-----NALGTDEVQEEMNDNGKEEPESLEVAVN 518
L + + + EK +++++ A + + E+M+ +G +E ES E++ N
Sbjct: 700 LRMMGVEVFKEKAEVLEKKPVEGKACDEEHIDEKMDIDGAKE-ESKELSGN 749
>sp|Q1HFZ0|NSUN2_MOUSE tRNA (cytosine(34)-C(5))-methyltransferase OS=Mus musculus GN=Nsun2
PE=1 SV=2
Length = 757
Score = 175 bits (444), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 149/503 (29%), Positives = 238/503 (47%), Gaps = 96/503 (19%)
Query: 5 VTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLR 64
T G L GGR+VYSTCS+NPVE+EAV+A +L K EG++EL DVS E+P L PG+
Sbjct: 303 ATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLEKSEGALELADVSAELPGLKWMPGVS 362
Query: 65 KWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQ 123
+WKV + G W A V + R I P+MFP TD+E
Sbjct: 363 QWKVMTRDGQWFADWHEVPQGRHTQIRPTMFP-------PTDLE---------------- 399
Query: 124 QVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEE 183
++ + LERC+R++PH QN+G FF+AVL K +P+P + +
Sbjct: 400 --------------KLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQ------ 439
Query: 184 KMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDP--EGSLEANSIDNEDGAAVEPDP 241
K+QN+ + E V E +P + LE+ I GA
Sbjct: 440 ----------PKVQNK-SAEAREPRVSSHVAATEGNPSDQSELESQMI---TGAG----- 480
Query: 242 LTCEKVDSEETEVPVNTETKSERTG-----GKRKLQIQGKWKGIDPVIFF-NDETIINSI 295
DSE NTE+ ++ G +K+++ G + DP +F D+ + I
Sbjct: 481 ------DSETAHNTENTESNEKKDGVCGPPPSKKMKLFGFKE--DPFVFIPEDDPLFPPI 532
Query: 296 KTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMF 355
+ FY +D SF L++R + + +++Y VSK +++ L N +++K+ + G+K++
Sbjct: 533 EKFYALDPSFP-RMNLLTRTTEGKK-RQLYMVSKELRNVLLNN---SEKMKVINTGIKVW 587
Query: 356 ERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEF 415
R S G C+FR++ EG+ + P+I +I+ S+ D K LL + F + +E
Sbjct: 588 CRNNS--GEEFDCAFRLAQEGIYTLYPFINSRIITVSMEDVKTLLTQENPFFRK-LSSEA 644
Query: 416 GEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLER 475
+ L G V+ +NP + + G W+G+AS+ V E L
Sbjct: 645 YSQVKDLAKGSVVLKYEPDS---ANPDTLQCPIVLCG-WRGKASIRTFVPK---NERLHY 697
Query: 476 L-LMRLEIEKGDLVQENALGTDE 497
L +M LE+ G+ +E + T+E
Sbjct: 698 LRMMGLEV-LGEKKKEGVILTNE 719
>sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase OS=Gallus gallus
GN=NSUN2 PE=2 SV=1
Length = 796
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 135/467 (28%), Positives = 222/467 (47%), Gaps = 88/467 (18%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGL 63
T G+ L GGR+VYSTCS+NP+ENEAV+A +L K +G++EL DVS+E+P L PG+
Sbjct: 302 IATRGVEQLAEGGRMVYSTCSLNPIENEAVIASLLEKSQGALELADVSSELPGLKRMPGI 361
Query: 64 RKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGL 122
KWKV K G W K V R+ I P+MFP
Sbjct: 362 TKWKVMLKDGQWFEEWKDVPSNRQTQIRPTMFPIKE------------------------ 397
Query: 123 QQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPE 182
EE++ + LERC+R++PH QN+G FF+AVL K SP+P
Sbjct: 398 -------------EEKLKAMNLERCIRILPHHQNTGGFFVAVLIKKSPMPW--------- 435
Query: 183 EKMLPRNDDPPKKLQN--QDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPD 240
N PK Q TE+ + DG+++ + +L A + +
Sbjct: 436 ------NKRQPKVHQKLPGKTEDTEVTATNAGDGSEDATEKPTL-----------AEDEE 478
Query: 241 PLTCEKVDSEETEVPVNTETKSERTG--GKRKLQIQGKWKGIDPVIFF-NDETIINSIKT 297
P +++ + +TE ++K G +K+++ G + DP +F D+ + I+
Sbjct: 479 PKKVQELQNSDTE-----QSKKGVCGPPPSKKMKLFGFKE--DPFVFLPEDDPLFLPIQK 531
Query: 298 FYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFER 357
FY +D SF L++R + + +++Y VSK +++ L N +++K+ + G+K++ R
Sbjct: 532 FYALDPSFP-KMNLLTRTQEGKK-RQLYMVSKELRNVLLNN---SEKMKVINTGIKVWSR 586
Query: 358 QTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGE 417
+ +G C+FR++ EG+ + P+I +I+ + D K LL + + F +E
Sbjct: 587 NS--DGEQFGCAFRLAQEGIYTLYPFIHARIVNVCIEDVKILLTQENPFLSKF-SSETQR 643
Query: 418 KASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMV 464
K + MG V+ E P + + G W+G+ SL V
Sbjct: 644 KVKDMAMGSIVLKYEPDPE---KPDDLQCPIVLCG-WQGKTSLRAFV 686
>sp|Q08J23|NSUN2_HUMAN tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2
PE=1 SV=2
Length = 767
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 148/500 (29%), Positives = 235/500 (47%), Gaps = 89/500 (17%)
Query: 5 VTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLR 64
T G L GGR+VYSTCS+NP+E+EAV+A +L K EG++EL DVSNE+P L PG+
Sbjct: 303 ATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPGIT 362
Query: 65 KWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQ 123
+WKV K G W V R I P+MFP PK
Sbjct: 363 QWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFP------------PKD------------- 397
Query: 124 QVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEE 183
E++ + LERC+R++PH QN+G FF+AVL K S +P + +
Sbjct: 398 ------------PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQ------ 439
Query: 184 KMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGS-LEANSIDNEDGAAVEPDPL 242
KLQ + E ++ AD T+ K + S LE+ S +
Sbjct: 440 ----------PKLQGKSAETRESTQLSPADLTEGKPTDPSKLESPSFTGTGDTEI----- 484
Query: 243 TCEKVDSEETEVPVNTETKSERTGG---KRKLQIQGKWKGIDPVIFF-NDETIINSIKTF 298
+ TE N +K + G +K+++ G + DP +F D+ + I+ F
Sbjct: 485 ------AHATEDLENNGSKKDGVCGPPPSKKMKLFGFKE--DPFVFIPEDDPLFPPIEKF 536
Query: 299 YGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQ 358
Y +D SF L++R + + +++Y VSK +++ L N +++K+ + G+K++ R
Sbjct: 537 YALDPSFP-RMNLLTRTTEGKK-RQLYMVSKELRNVLLNN---SEKMKVINTGIKVWCRN 591
Query: 359 TSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEK 418
S G C+FR++ EG+ + P+I +I+ S+ D K LL + F + +E +
Sbjct: 592 NS--GEEFDCAFRLAQEGIYTLYPFINSRIITVSMEDVKILLTQENPFFRK-LSSETYSQ 648
Query: 419 ASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERL-L 477
A L G V+ +NP + + G W+G+AS+ V E L L +
Sbjct: 649 AKDLAKGSIVLKYEPDS---ANPDALQCPIVLCG-WRGKASIRTFVPK---NERLHYLRM 701
Query: 478 MRLEIEKGDLVQENALGTDE 497
M LE+ G+ +E + T+E
Sbjct: 702 MGLEV-LGEKKKEGVILTNE 720
>sp|Q4V7N2|NSUN2_XENLA tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus laevis
GN=nsun2 PE=2 SV=1
Length = 698
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/480 (28%), Positives = 228/480 (47%), Gaps = 82/480 (17%)
Query: 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRP 61
+ T G+ L GGR+VYSTCS+NPVE+EAV+ +L K EGS+EL DV++E+P L P
Sbjct: 298 IRIATRGVEQLAEGGRMVYSTCSLNPVEDEAVIVSLLDKSEGSLELADVASELPGLKWMP 357
Query: 62 GLRKWKVRDK-GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDE 120
G+ +W+V K G W + V R I P+MFP
Sbjct: 358 GITQWRVMTKEGQWFEKWEDVPTSRHTQIRPTMFP------------------------- 392
Query: 121 GLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHIN 180
++D EE++ + L RCMR++PH QN+G FF+AVL K +P+P N
Sbjct: 393 ----LKD--------EEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMP------WN 434
Query: 181 PEEKMLPRNDDPPKKLQNQD-TEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEP 239
+ L R PP + + E+ D++ DE ++D E+G E
Sbjct: 435 KRQPKLQRR--PPVSVCDASVAPEIVKAVADISAIADEP---------AVDAENG---ET 480
Query: 240 DPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFN-DETIINSIKTF 298
P T + S+ V +K + G ++ DP +F + D+ I I+ F
Sbjct: 481 KPCTNQSGSSKTDSVCCPPPSKKMKLFGFKE----------DPFVFLSEDDPIFEPIQKF 530
Query: 299 YGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQ 358
Y +D SF L++R + + +++Y VSK +++ L N +++K+ + G+K+ R
Sbjct: 531 YALDPSFP-KKNLLTRTQEGKK-RQLYMVSKELRNVLLHN---SEKMKVINTGIKVLCR- 584
Query: 359 TSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEK 418
+ +G C++R++ EG+ + P+I +IL S+ D K LL + + F E ++
Sbjct: 585 -NNDGEQYGCAYRLAQEGIYSLYPFINARILTVSVEDIKVLLTQENPFLSKF-SKETQKQ 642
Query: 419 ASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLM 478
A+ L MG V+ + P + + G W+G+ S+ V + L++ + +
Sbjct: 643 ANNLDMGSIVLKYEPDPQ---QPETLQCPIVLCG-WRGKTSIRSFVFFLHRINLVQWIFI 698
>sp|O13935|TRM4B_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm4b PE=3 SV=2
Length = 685
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 135/485 (27%), Positives = 200/485 (41%), Gaps = 136/485 (28%)
Query: 8 GISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWK 67
G+ LLKVGG +VYSTCS+NP+ENEAVV L+ G+V LVDVS ++P L PGL WK
Sbjct: 308 GLQLLKVGGCLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWK 367
Query: 68 VRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVED 127
V D + +I + SM+P
Sbjct: 368 VLDDSLNEFQSPAENTNDKIELTESMWPLP------------------------------ 397
Query: 128 VLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLP 187
EEE+S L +ERC RL PH QN+G FF+AVLQK P + + +P++
Sbjct: 398 --------EEEMSKLHIERCARLYPHMQNTGGFFVAVLQKTDP---INSRSFDPKKYTAS 446
Query: 188 RNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKV 247
PP+ + Q TE+ G DE +NS + G +
Sbjct: 447 MEILPPEN-KRQRTEK----------GVDE-------ASNSTLTKSGNSY---------F 479
Query: 248 DSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFN-DETIINSIKTFYGIDDSFQ 306
D E P ++ N D+T I +I FYGID SF
Sbjct: 480 DEE-------------------------------PFVYINPDDTSIKTIVDFYGIDPSFP 508
Query: 307 LSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQ-------- 358
Q RN V+ IY+ K+ ++ N ++K G++ F +Q
Sbjct: 509 -RDQFFVRNQSGIPVRSIYFACSLFKEIIEAN---TNRVKFVHGGVRFFVKQEISQLLKD 564
Query: 359 TSREGNSAPCSFRISSEGLPVILPYITKQILY-ASLVDFKHLLQYKTIKFADFVDAEFGE 417
S + N C+FRI S G+ +I P++ ++ Y A L D K L++ + F ++ +
Sbjct: 565 FSLKANKDICNFRIHSNGVNIISPFLNEKHFYDAGLKDLKILVKNEYPHVEQFSESGMLK 624
Query: 418 KA-SKLMMGCCVIVLSKGGEALSNPIQIDAST---------IAIGCWKGRASLSVMVTAI 467
K K+ +GC N +++DA T I W+ S ++M+
Sbjct: 625 KEFEKMPLGC-------------NILRVDAQTKDGALMDMLILQPIWRSPTSCNLMLARK 671
Query: 468 DCQEL 472
+ Q L
Sbjct: 672 EKQNL 676
>sp|Q9HGQ2|TRM4A_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm4a PE=1 SV=3
Length = 688
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 128/490 (26%), Positives = 211/490 (43%), Gaps = 120/490 (24%)
Query: 8 GISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWK 67
G+ LL+ GGR+VYSTCS+NP+ENEAVV+ +L GSV LVDVS+E+PQL G+ W
Sbjct: 294 GLQLLEKGGRLVYSTCSLNPIENEAVVSAVLNATRGSVRLVDVSSELPQLKRSQGVDNWV 353
Query: 68 VRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVED 127
V D + I PS D PK E +++
Sbjct: 354 VCDSD--------------LNIYPSF-----------DTLPK----------ELYEKMPP 378
Query: 128 VLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPL-----PVVQEKHINPE 182
L ++E+++L ++ C+R+ PH QN+G FF+AVL+K L V + +
Sbjct: 379 TLWPLP--KKELAELNIQNCLRIYPHFQNTGGFFVAVLEKYENLTSSMKTAVDDNKVFLR 436
Query: 183 EKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPL 242
E+ LP + K + QDT+E + + LA E P+G
Sbjct: 437 EQKLP--SEQASKKRKQDTQETSS-DSKLA----EVKPKG-------------------- 469
Query: 243 TCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFN-DETIINSIKTFYGI 301
+ GG R + +DP ++ D+ + I +GI
Sbjct: 470 ---------------------KNGGNR-------FHELDPFVYIKEDDQALEKIYKKFGI 501
Query: 302 DDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQ--- 358
D++ Q RN + K IY + ++ ++ N ++K GLK+F RQ
Sbjct: 502 DEAIIKKNQFFVRNVNGVPTKAIYISNDLFRNVIENN---RNRVKFVHGGLKIFVRQDFG 558
Query: 359 -TSRE--GNSAPCSFRISSEGLPVILPYITKQILY-ASLVDFKHLLQYKTIKFADFV-DA 413
SRE + C FR+ S+G + +I + L+ +L D LL ++ + DF D+
Sbjct: 559 SLSREIAEKNGTCVFRVQSDGANLASHFIAESCLFHTTLSDLFILLDHEAVTIDDFPEDS 618
Query: 414 EFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELL 473
F ++ + L +G ++ + E + + I WK +V+++
Sbjct: 619 LFRKEYNHLDLGSTLLHVDLAKEE-----SVIKKQVYIPLWKSVRICNVLLSNS------ 667
Query: 474 ERLLMRLEIE 483
E+ ++L+IE
Sbjct: 668 EKRTLKLQIE 677
>sp|Q9W4M9|NSUN2_DROME tRNA (cytosine(34)-C(5))-methyltransferase OS=Drosophila
melanogaster GN=CG6133 PE=2 SV=1
Length = 746
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 163/376 (43%), Gaps = 104/376 (27%)
Query: 5 VTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLR 64
V G +L+VGGR+VYSTCS+NP+ENEAV+ I++ +G++ELVD + VP L ++PG+
Sbjct: 305 VRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRIIKDADGALELVDAGHLVPGLKYKPGMT 364
Query: 65 KWKVRDKGI--WLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGL 122
WK+ K + + V + I P MFP +
Sbjct: 365 DWKLATKEVDQIFTRFEEVPESLHTIIRPGMFPLPA------------------------ 400
Query: 123 QQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPE 182
+E++ + LE+C+R++PH Q+SG FF+AVL+K L
Sbjct: 401 --------------DEMAKIGLEKCLRVLPHLQDSGGFFVAVLEKRRQL----------- 435
Query: 183 EKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPL 242
+ D E+ V L + + E ++A DG +
Sbjct: 436 ------------SFEKNDVVEL----VKLNETAKQPAAEPQVDA------DGKPI----- 468
Query: 243 TCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFN-DETIINSIKTFYGI 301
EE VP + K R G ++ DP +FF ++ +IK FY +
Sbjct: 469 -------EEKSVPWGPQRKKRRLHGYKE----------DPYVFFGENDPDYQAIKEFYQL 511
Query: 302 DDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSR 361
D+S LS + + T + K IYY S+ ++ DL +KI + G+K F R +R
Sbjct: 512 DES--LSQRCLLTRCVTEKKKNIYYCSEPIR---DLVLNNENNIKIINTGVKTFVRCENR 566
Query: 362 EGNSAPCSFRISSEGL 377
FR++ EGL
Sbjct: 567 HTVH---PFRLAQEGL 579
>sp|P38205|NCL1_YEAST Multisite-specific tRNA:(cytosine-C(5))-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NCL1 PE=1 SV=1
Length = 684
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 77/161 (47%), Gaps = 44/161 (27%)
Query: 8 GISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWK 67
G+ LLK GR+VYSTCS+NP+ENEAVVAE LRK + LV+ +++P LI G+ KW
Sbjct: 295 GLHLLKNNGRLVYSTCSLNPIENEAVVAEALRKWGDKIRLVNCDDKLPGLIRSKGVSKWP 354
Query: 68 VRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVED 127
V D+ + DEG ++
Sbjct: 355 VYDRNL---------------------------------------TEKTKGDEG--TLDS 373
Query: 128 VLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKV 168
+ + EEE S L+ CMR+ PH QN+G FFI V +KV
Sbjct: 374 FFSPS---EEEASKFNLQNCMRVYPHQQNTGGFFITVFEKV 411
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 29/243 (11%)
Query: 245 EKVDSE----ETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFNDET-IINSIKTFY 299
EK+ SE E+E P + K E K +L +P +F + + + FY
Sbjct: 420 EKLSSETPALESEGPQTKKIKVEEVQKKERLPRDA---NEEPFVFVDPQHEALKVCWDFY 476
Query: 300 GIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQT 359
GID+ F + LV RN + +Y V ++KD + N +LKI G+K+F Q
Sbjct: 477 GIDNIFDRNTCLV-RNATGEPTRVVYTVCPALKDVIQAN---DDRLKIIYSGVKLFVSQR 532
Query: 360 SREGNSAPCSFRISSEGLPVILPYI-TKQILYASLVDFKHLLQYKTIKFADF----VDAE 414
S CS+RI SE LP++ ++ + +I+ A+L KHLL F D +D +
Sbjct: 533 S----DIECSWRIQSESLPIMKHHMKSNRIVEANLEMLKHLLIESFPNFDDIRSKNIDND 588
Query: 415 FGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLE 474
F EK +KL GC I +S+ A N + + WKG +++MV D ELL
Sbjct: 589 FVEKMTKLSSGCAFIDVSRNDPAKEN--------LFLPVWKGNKCINLMVCKEDTHELLY 640
Query: 475 RLL 477
R+
Sbjct: 641 RIF 643
>sp|Q9V106|TRCM_PYRAB tRNA (cytosine(49)-C(5))-methyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06230 PE=1 SV=1
Length = 311
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 50
+ A LK GG +VYSTC+++P+ENE VV +L+K + +E V +
Sbjct: 220 LILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKVKL 266
>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm4 PE=1 SV=1
Length = 274
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV-SNEVPQLIHRPG 62
+ GI LLK G +VYSTCSM ENE V+ IL+K VEL+ + +NE + + G
Sbjct: 193 LIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK-RNDVELIIIKANEFKGINIKEG 251
Query: 63 LRKWKVR 69
K +R
Sbjct: 252 YIKGTLR 258
>sp|Q0V8R7|NSUN4_BOVIN 5-methylcytosine rRNA methyltransferase NSUN4 OS=Bos taurus
GN=NSUN4 PE=2 SV=2
Length = 384
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 7/48 (14%)
Query: 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 49
V + AG+ K GG IVYSTCS++ ++NE VV +G++EL+D
Sbjct: 289 VQLLAAGLLATKPGGHIVYSTCSLSHLQNEYVV-------QGAIELLD 329
>sp|P72943|RSMB_SYNY3 Ribosomal RNA small subunit methyltransferase B OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmB PE=3 SV=1
Length = 446
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 11 LLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 42
L+K GG +VYSTC++NP ENEA + L+ E
Sbjct: 371 LVKSGGTLVYSTCTLNPAENEAQIERFLQDHE 402
>sp|Q88B41|RSMB_PSESM Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=rsmB PE=3 SV=1
Length = 448
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 12 LKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQ 56
L+VGG +VY+TCS P EN V+ L + G+ EL D++ + Q
Sbjct: 362 LQVGGMLVYATCSTLPTENTDVIEAFLARTSGAREL-DIAGQAGQ 405
>sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2
Length = 465
Score = 39.7 bits (91), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 17 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHR-----PGLRKWKVRDK 71
R+VYSTCS+ ENE VV E L+ G+ L V +P HR PG
Sbjct: 353 RLVYSTCSLCQEENEDVVQEALQHNSGTFRLAPV---LPTWPHRGLSTFPGSEHCLRASP 409
Query: 72 GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEP 108
L + F R +VP+ P DA D EP
Sbjct: 410 ETTLTGGFFIAVFERAEVVPTPAP----QTDAMDPEP 442
>sp|A6TB06|RSMF_KLEP7 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmF PE=3 SV=2
Length = 477
Score = 39.3 bits (90), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 5 VTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N EN++V+ +L + +VE++ + P
Sbjct: 229 IDSAFHALRPGGTLVYSTCTLNREENQSVIEWLLSRYPQAVEILPLGELFP 279
>sp|Q1RAV2|RSMF_ECOUT Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 39.3 bits (90), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L++GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRLGGTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP 279
>sp|A1AC00|RSMF_ECOK1 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O1:K1 / APEC GN=rsmF PE=3 SV=2
Length = 479
Score = 39.3 bits (90), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L++GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRLGGTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP 279
>sp|B7MBP2|RSMF_ECO45 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 39.3 bits (90), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L++GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRLGGTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP 279
>sp|Q8CCT7|NSUN3_MOUSE Putative methyltransferase NSUN3 OS=Mus musculus GN=Nsun3 PE=2 SV=1
Length = 348
Score = 38.9 bits (89), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 51
V V + I L+ GG +VYSTC+++ EN+ V++E+L + ++ VD+S
Sbjct: 244 VELVRSAIKALRPGGLLVYSTCTLSKAENQDVISEVLTS-DSNIVPVDIS 292
>sp|Q4KMK0|NSUN3_DANRE Putative methyltransferase NSUN3 OS=Danio rerio GN=nsun3 PE=2 SV=1
Length = 367
Score = 38.9 bits (89), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNE 53
+ + ++ ++ GG +VYSTC+M+ EN++VV E+L G VEL ++ +
Sbjct: 277 LLCSALAAVRPGGIVVYSTCTMSRAENQSVVEEVLASYPG-VELQEMEQQ 325
>sp|B5XQ35|RSMF_KLEP3 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae (strain 342) GN=rsmF PE=3 SV=1
Length = 477
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 5 VTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSN 52
+ + L+ GG +VYSTC++N EN++VV +L + +VE++ + +
Sbjct: 229 IDSAFHALRPGGTLVYSTCTLNREENQSVVQWLLSRYPQAVEILPLGD 276
>sp|Q9CZ57|NSUN4_MOUSE 5-methylcytosine rRNA methyltransferase NSUN4 OS=Mus musculus
GN=Nsun4 PE=2 SV=1
Length = 381
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 7/47 (14%)
Query: 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 48
V + AG+ K GG +VYSTCS++ ++NE VV +G++EL+
Sbjct: 286 VQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVV-------QGAIELL 325
>sp|Q32F19|RSMF_SHIDS Ribosomal RNA small subunit methyltransferase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmF PE=3 SV=2
Length = 479
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L++GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRLGGTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|Q96CB9|NSUN4_HUMAN 5-methylcytosine rRNA methyltransferase NSUN4 OS=Homo sapiens
GN=NSUN4 PE=1 SV=2
Length = 384
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 7/47 (14%)
Query: 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 48
V + AG+ K GG +VYSTCS++ ++NE VV +G++EL+
Sbjct: 289 VQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVV-------QGAIELL 328
>sp|B8CPH7|RSMF_SHEPW Ribosomal RNA small subunit methyltransferase F OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=rsmF PE=3 SV=2
Length = 474
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + LK GG +VYSTC+++ EN+ V + ++ +VE +++S+ P
Sbjct: 224 LIDSAFQSLKAGGELVYSTCALSRQENQNVCDYLKQRYPDAVEFINLSSLFP 275
>sp|Q88RR3|RSMB_PSEPK Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas
putida (strain KT2440) GN=rsmB PE=3 SV=1
Length = 436
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 12 LKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEV 54
L+VGG ++Y+TCS P EN V+ L + G+ EL D++ E
Sbjct: 362 LEVGGMLLYATCSTLPTENTEVIKAFLARTPGAREL-DLATEA 403
>sp|P45679|RSMB_COXBU Ribosomal RNA small subunit methyltransferase B OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=rsmB
PE=3 SV=1
Length = 430
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEIL 38
+ A ++LK GG ++YSTCS+ P ENE V+ E L
Sbjct: 352 LLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFL 386
>sp|Q8FGS9|RSMF_ECOL6 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmF PE=3
SV=2
Length = 479
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP 279
>sp|Q9H649|NSUN3_HUMAN Putative methyltransferase NSUN3 OS=Homo sapiens GN=NSUN3 PE=2 SV=1
Length = 340
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 50
+ + I L+ GG +VYSTC+++ EN+ V++EIL G++ +D+
Sbjct: 246 LLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNS-HGNIMPMDI 291
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|A9MNH4|RSMF_SALAR Ribosomal RNA small subunit methyltransferase F OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmF PE=3 SV=2
Length = 479
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ L+ GG +VYSTC++N ENEAV + +VE + +++ P
Sbjct: 231 SAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYTDAVEFLPLNDLFP 279
>sp|Q9I7A9|RSMB_PSEAE Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rsmB PE=3 SV=1
Length = 434
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 12 LKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVEL 47
L+VGG ++Y+TCS+ P EN +A L + G+ EL
Sbjct: 362 LEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL 397
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B4TY18|RSMF_SALSV Ribosomal RNA small subunit methyltransferase F OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 231 SAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|A9MV57|RSMF_SALPB Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmF PE=3
SV=2
Length = 479
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 231 SAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|C0Q2Y5|RSMF_SALPC Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmF PE=3 SV=1
Length = 479
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 231 SAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|Q57NF9|RSMF_SALCH Ribosomal RNA small subunit methyltransferase F OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 231 SAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|B4SV89|RSMF_SALNS Ribosomal RNA small subunit methyltransferase F OS=Salmonella
newport (strain SL254) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 231 SAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|Q8ZNZ2|RSMF_SALTY Ribosomal RNA small subunit methyltransferase F OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmF PE=3 SV=1
Length = 479
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 231 SAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|Q8Z662|RSMF_SALTI Ribosomal RNA small subunit methyltransferase F OS=Salmonella typhi
GN=rsmF PE=3 SV=1
Length = 479
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 231 SAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|B7LPL0|RSMF_ESCF3 Ribosomal RNA small subunit methyltransferase F OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmF PE=3 SV=1
Length = 479
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 4 FVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 55
+ + L+ GG +VYSTC++N ENEAV + +VE + + + P
Sbjct: 228 LIDSAFHALRPGGTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,315,979
Number of Sequences: 539616
Number of extensions: 8610117
Number of successful extensions: 20219
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 19964
Number of HSP's gapped (non-prelim): 322
length of query: 519
length of database: 191,569,459
effective HSP length: 122
effective length of query: 397
effective length of database: 125,736,307
effective search space: 49917313879
effective search space used: 49917313879
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)