Query 010061
Match_columns 519
No_of_seqs 225 out of 1405
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 20:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11933 yebU rRNA (cytosine-C 99.9 6.7E-22 1.5E-26 213.2 19.6 206 2-408 222-429 (470)
2 KOG2198 tRNA cytosine-5-methyl 99.8 5.2E-20 1.1E-24 190.7 6.9 86 2-87 276-362 (375)
3 COG0144 Sun tRNA and rRNA cyto 99.8 2E-18 4.4E-23 180.6 10.5 49 2-51 268-316 (355)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.7 1.2E-18 2.5E-23 177.1 6.8 49 2-51 195-247 (283)
5 TIGR00446 nop2p NOL1/NOP2/sun 99.7 5.5E-17 1.2E-21 162.9 9.8 42 2-43 179-220 (264)
6 KOG1122 tRNA and rRNA cytosine 99.6 8.5E-17 1.8E-21 168.7 3.8 92 3-170 352-443 (460)
7 PRK14902 16S rRNA methyltransf 99.5 2E-14 4.3E-19 154.2 10.5 48 3-51 360-407 (444)
8 PRK14904 16S rRNA methyltransf 99.5 2E-14 4.2E-19 154.4 10.1 47 3-50 358-404 (445)
9 PRK14903 16S rRNA methyltransf 99.5 2.1E-14 4.6E-19 153.9 10.2 49 2-51 346-394 (431)
10 TIGR00563 rsmB ribosomal RNA s 99.5 1.9E-14 4.2E-19 153.6 9.5 42 2-43 348-389 (426)
11 PRK10901 16S rRNA methyltransf 99.5 1.6E-13 3.4E-18 146.8 9.6 45 3-48 353-397 (427)
12 PRK14901 16S rRNA methyltransf 99.4 2.1E-13 4.6E-18 146.1 7.6 42 2-43 364-405 (434)
13 KOG2360 Proliferation-associat 98.7 1.3E-08 2.8E-13 106.8 4.9 46 3-49 326-371 (413)
14 PRK15128 23S rRNA m(5)C1962 me 92.6 0.29 6.3E-06 52.8 7.0 49 3-51 320-370 (396)
15 PF13636 Nol1_Nop2_Fmu_2: pre- 92.0 0.17 3.7E-06 44.4 3.7 70 343-432 11-80 (102)
16 PRK00377 cbiT cobalt-precorrin 89.7 0.66 1.4E-05 44.6 5.6 47 2-51 125-171 (198)
17 COG1092 Predicted SAM-dependen 86.1 1.9 4.1E-05 46.7 6.9 48 2-49 316-365 (393)
18 TIGR00537 hemK_rel_arch HemK-r 83.1 2.2 4.7E-05 40.2 5.2 43 3-48 121-163 (179)
19 PF10672 Methyltrans_SAM: S-ad 78.4 1.8 4E-05 44.9 3.2 29 2-30 218-246 (286)
20 COG2242 CobL Precorrin-6B meth 78.4 4.2 9.1E-05 39.9 5.5 43 3-49 116-158 (187)
21 COG3270 Uncharacterized conser 74.8 2.5 5.4E-05 38.9 2.6 70 343-432 33-102 (127)
22 PRK08287 cobalt-precorrin-6Y C 73.3 4 8.6E-05 38.7 3.8 37 3-42 112-148 (187)
23 PRK11783 rlmL 23S rRNA m(2)G24 72.3 8.5 0.00018 44.6 6.8 44 3-50 637-680 (702)
24 COG0275 Predicted S-adenosylme 64.0 16 0.00034 38.6 6.1 74 3-86 225-300 (314)
25 PRK07402 precorrin-6B methylas 57.6 18 0.00038 34.6 4.9 36 3-41 123-158 (196)
26 PRK14967 putative methyltransf 54.5 30 0.00065 33.8 6.1 43 3-48 140-182 (223)
27 PRK00121 trmB tRNA (guanine-N( 51.4 23 0.00049 34.3 4.6 32 3-40 137-168 (202)
28 PRK14968 putative methyltransf 51.1 29 0.00063 32.1 5.1 37 3-42 129-165 (188)
29 COG2227 UbiG 2-polyprenyl-3-me 49.2 14 0.00029 37.8 2.7 25 3-27 142-166 (243)
30 PF06962 rRNA_methylase: Putat 41.9 27 0.00059 32.7 3.3 37 2-38 72-111 (140)
31 PF01795 Methyltransf_5: MraW 41.2 21 0.00046 37.6 2.8 78 3-87 222-299 (310)
32 TIGR00452 methyltransferase, p 40.5 39 0.00085 35.5 4.6 25 3-27 206-230 (314)
33 KOG3492 Ribosome biogenesis pr 37.3 1.1E+02 0.0025 29.4 6.6 120 290-432 11-135 (180)
34 PLN02396 hexaprenyldihydroxybe 36.3 77 0.0017 33.4 6.1 20 3-22 216-235 (322)
35 PRK15052 D-tagatose-1,6-bispho 36.0 53 0.0011 36.1 4.8 63 291-363 199-262 (421)
36 TIGR00138 gidB 16S rRNA methyl 35.6 76 0.0017 30.3 5.4 46 3-52 123-169 (181)
37 PRK04266 fibrillarin; Provisio 35.6 68 0.0015 32.0 5.3 18 4-21 158-175 (226)
38 PRK00107 gidB 16S rRNA methylt 35.1 77 0.0017 30.7 5.4 39 3-45 126-164 (187)
39 TIGR00006 S-adenosyl-methyltra 34.3 76 0.0017 33.4 5.6 73 3-86 221-293 (305)
40 PRK09489 rsmC 16S ribosomal RN 32.2 65 0.0014 34.2 4.8 27 3-29 284-310 (342)
41 KOG1540 Ubiquinone biosynthesi 31.7 36 0.00078 35.4 2.6 38 2-42 194-231 (296)
42 PF08013 Tagatose_6_P_K: Tagat 31.5 73 0.0016 35.1 5.0 50 11-67 10-63 (424)
43 PF01234 NNMT_PNMT_TEMT: NNMT/ 31.4 59 0.0013 33.4 4.1 47 3-51 180-238 (256)
44 PRK15068 tRNA mo(5)U34 methylt 31.1 88 0.0019 32.8 5.4 22 2-23 206-227 (322)
45 TIGR00536 hemK_fam HemK family 30.7 92 0.002 31.7 5.4 33 3-39 225-257 (284)
46 TIGR00091 tRNA (guanine-N(7)-) 29.9 44 0.00095 32.0 2.8 20 3-22 113-132 (194)
47 PRK05134 bifunctional 3-demeth 29.5 1.1E+02 0.0025 29.6 5.6 25 3-27 132-156 (233)
48 smart00828 PKS_MT Methyltransf 28.9 1.2E+02 0.0027 29.0 5.8 21 3-23 85-105 (224)
49 KOG0144 RNA-binding protein CU 28.5 22 0.00048 39.1 0.5 41 390-433 45-85 (510)
50 PRK15458 tagatose 6-phosphate 28.2 86 0.0019 34.6 4.9 63 291-363 203-267 (426)
51 PF13489 Methyltransf_23: Meth 27.6 34 0.00073 30.4 1.5 23 3-25 96-118 (161)
52 PRK10258 biotin biosynthesis p 27.3 47 0.001 32.7 2.6 21 3-23 121-141 (251)
53 PRK11630 hypothetical protein; 27.2 76 0.0016 31.2 3.9 37 3-39 15-55 (206)
54 TIGR02810 agaZ_gatZ D-tagatose 27.1 93 0.002 34.3 4.9 64 291-363 199-263 (420)
55 PRK08317 hypothetical protein; 27.1 57 0.0012 31.0 3.0 22 3-24 105-126 (241)
56 TIGR00438 rrmJ cell division p 26.6 78 0.0017 29.9 3.8 20 3-22 127-146 (188)
57 PF03657 UPF0113: Uncharacteri 25.7 36 0.00078 32.6 1.3 73 320-405 38-110 (162)
58 PRK11873 arsM arsenite S-adeno 24.9 57 0.0012 32.6 2.7 21 3-23 164-184 (272)
59 PRK00050 16S rRNA m(4)C1402 me 24.7 1.3E+02 0.0028 31.6 5.3 66 3-86 217-283 (296)
60 PRK11036 putative S-adenosyl-L 23.8 1.4E+02 0.003 29.7 5.2 23 3-25 130-152 (255)
61 TIGR01934 MenG_MenH_UbiE ubiqu 23.7 62 0.0013 30.6 2.6 23 2-24 123-145 (223)
62 PF06859 Bin3: Bicoid-interact 23.6 31 0.00067 31.2 0.4 19 2-20 24-42 (110)
63 PRK05537 bifunctional sulfate 23.4 3.8E+02 0.0082 30.6 9.1 124 288-432 267-399 (568)
64 TIGR02716 C20_methyl_CrtF C-20 21.8 86 0.0019 32.1 3.3 29 2-30 234-262 (306)
65 KOG1663 O-methyltransferase [S 21.3 72 0.0016 32.5 2.5 18 3-20 164-181 (237)
66 PRK04457 spermidine synthase; 20.7 2.7E+02 0.0059 28.2 6.6 46 2-48 157-202 (262)
67 TIGR00417 speE spermidine synt 20.4 1.3E+02 0.0029 30.4 4.3 35 3-39 167-201 (270)
68 PF12147 Methyltransf_20: Puta 20.1 1.2E+02 0.0026 32.2 3.8 36 5-42 232-267 (311)
No 1
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.88 E-value=6.7e-22 Score=213.20 Aligned_cols=206 Identities=20% Similarity=0.314 Sum_probs=142.8
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCCCCCCcccCCCCcccceecCCCccccchhhh
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHV 81 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~~~lp~l~~~pGl~~W~v~~~~~~~~~~~~v 81 (519)
.+||.+|+.+|||||+|||||||++|+|||+||+++|+++++.++++++...+++.
T Consensus 222 ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~~~------------------------ 277 (470)
T PRK11933 222 RELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLFPGA------------------------ 277 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcEEecccccccccc------------------------
Confidence 47999999999999999999999999999999999999998656666553221110
Q ss_pred hhhhhccccCCCCCCCCCCCCCCCCCCCCCCccccCCccccchhhcccccccchhhhhccccccceeeecccccCCCceE
Q 010061 82 RKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFF 161 (519)
Q Consensus 82 ~~~~~~~i~~SMFpp~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~e~~~~~lercmRi~PH~qdTGGFF 161 (519)
++ .....+|+|+|||.++|+|||
T Consensus 278 -------------~~--------------------------------------------~~~~~~~~r~~P~~~~~dGfF 300 (470)
T PRK11933 278 -------------EK--------------------------------------------ALTEEGFLHVFPQIYDSEGFF 300 (470)
T ss_pred -------------cc--------------------------------------------ccCCCCeEEECCCCCCCccee
Confidence 00 001357999999999999999
Q ss_pred EEEEEecCCCCccccccCCcccccCCCCCCCCccccCCcccccccccccccCCCCCCCCCcccccccCCCCCCCCCCCCC
Q 010061 162 IAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDP 241 (519)
Q Consensus 162 IAvl~K~~~~~~~~~~~~~k~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 241 (519)
||+|+|.+....... ..
T Consensus 301 iA~lrk~~~~~~~~~-----~~---------------------------------------------------------- 317 (470)
T PRK11933 301 VARLRKTASVPRLPA-----PK---------------------------------------------------------- 317 (470)
T ss_pred eEEEEecCCcccccc-----cc----------------------------------------------------------
Confidence 999999754211000 00
Q ss_pred CccccCCCcccccCCCcccccccCCCccccccCCCccccCCcccCC--ChHHHHHHHHHhCCCCCCCCCCceEeecCCCC
Q 010061 242 LTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFN--DETIINSIKTFYGIDDSFQLSGQLVSRNGDTN 319 (519)
Q Consensus 242 ~~~~~~~~e~~~~~~~~~~~~~~~~~Krk~~~~~~fk~~dPf~f~~--d~~~~~~I~~fYgI~~~FP~~~~Lv~Rn~~g~ 319 (519)
...+| + |+.-+. ..+.|....+-|+++. +....++.++
T Consensus 318 ----------------------~~~~k--------~----~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~---- 357 (470)
T PRK11933 318 ----------------------YKVGK--------F----PFTPAKDKEAQEIRQAAASVGLSW--PENLRLWQRD---- 357 (470)
T ss_pred ----------------------ccccc--------c----cccccchhHHHHHHHHHHhcCCCC--CCCCcEEEEC----
Confidence 00000 0 000000 1233455455567753 2233465554
Q ss_pred cceEEEEeCHHHHHHHHhcccCCCceEEEEceEeeEEEecCCCCCCCcceeeeccchhhhhhccccCceEEeCHHHHHHH
Q 010061 320 RVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHL 399 (519)
Q Consensus 320 ~~k~IYyvS~~vk~Il~~N~~~g~~LK~i~~GvK~F~rq~~~~~~~~~C~~RI~qEGl~~l~p~~~kRiv~~s~edl~~L 399 (519)
..||++.......+ .+|||++.|+.+-+-.+ -+|..++.....+.+.-..+++.++.++....
T Consensus 358 --~~l~~~p~~~~~~~-------~~l~v~r~Gl~lg~~kk--------~rfePs~ala~~l~~~~~~~~~~l~~~~~~~Y 420 (470)
T PRK11933 358 --KEVWLFPAGIEPLI-------GKVRFSRIGIKLAETHK--------KGYRWQHEAVIALASPDNANAFELTPQEAEEW 420 (470)
T ss_pred --CEEEEeccccchhh-------cCCeEeeeceeEeeeec--------CCeeEcHHHHHHhCcccccceEecCHHHHHHH
Confidence 35999998754432 58999999999988764 48999999888888776778999999999999
Q ss_pred hhcCCCCcc
Q 010061 400 LQYKTIKFA 408 (519)
Q Consensus 400 L~~~~~~~~ 408 (519)
|....+...
T Consensus 421 l~ge~l~~~ 429 (470)
T PRK11933 421 YMGRDIYPQ 429 (470)
T ss_pred HCCCCccCC
Confidence 998776543
No 2
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=5.2e-20 Score=190.65 Aligned_cols=86 Identities=52% Similarity=0.834 Sum_probs=81.0
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCCCCCCcccCCCCcccceecCCCc-cccchhh
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGI-WLASHKH 80 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~~~lp~l~~~pGl~~W~v~~~~~-~~~~~~~ 80 (519)
++||.||++|||+||+|||||||+||+|||+||+++|+.++++++|++++..||.|+|.+|.+.|++.+.+. |+.++.+
T Consensus 276 ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~~~lp~l~r~~g~t~~~~~~~~~~~~~~~~~ 355 (375)
T KOG2198|consen 276 LRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVSGDLPGLKRMFGSTGWKVHDKVLKWFTSPLE 355 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHhcCcccceeeccccccceecCCCCcceEEecCcccccCccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999764 8999999
Q ss_pred hhhhhhc
Q 010061 81 VRKFRRI 87 (519)
Q Consensus 81 v~~~~~~ 87 (519)
+|.....
T Consensus 356 vp~~~~~ 362 (375)
T KOG2198|consen 356 VPKLVAN 362 (375)
T ss_pred cccchhh
Confidence 9877554
No 3
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2e-18 Score=180.56 Aligned_cols=49 Identities=45% Similarity=0.684 Sum_probs=44.8
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCC
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 51 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~ 51 (519)
.+||.+|+++|||||+|||||||++|+|||+||.++|+++++ ++++++.
T Consensus 268 ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~-~~~~~~~ 316 (355)
T COG0144 268 KEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPD-FELEPVR 316 (355)
T ss_pred HHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCC-ceeeccc
Confidence 479999999999999999999999999999999999999875 7777664
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.75 E-value=1.2e-18 Score=177.14 Aligned_cols=49 Identities=45% Similarity=0.742 Sum_probs=45.3
Q ss_pred HHHHHHHHhcc----cCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCC
Q 010061 2 VVFVTAGISLL----KVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 51 (519)
Q Consensus 2 ~~IL~ra~~lL----k~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~ 51 (519)
.+||.+|+++| |+||+|||||||++|+|||+||.++|+++++ ++++++.
T Consensus 195 ~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~-~~l~~~~ 247 (283)
T PF01189_consen 195 REILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPD-FELVPIP 247 (283)
T ss_dssp HHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTS-EEEECCE
T ss_pred HHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCC-cEEEecc
Confidence 37999999999 9999999999999999999999999999874 8888765
No 5
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.69 E-value=5.5e-17 Score=162.91 Aligned_cols=42 Identities=45% Similarity=0.689 Sum_probs=39.8
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCC
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 43 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~ 43 (519)
.+||.+|+.+|||||+|||||||++|+|||.||+++|+++++
T Consensus 179 ~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~ 220 (264)
T TIGR00446 179 KELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPD 220 (264)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCC
Confidence 369999999999999999999999999999999999999875
No 6
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=99.64 E-value=8.5e-17 Score=168.74 Aligned_cols=92 Identities=38% Similarity=0.542 Sum_probs=75.4
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCCCCCCcccCCCCcccceecCCCccccchhhhh
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVR 82 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~~~lp~l~~~pGl~~W~v~~~~~~~~~~~~v~ 82 (519)
++|..|+++|++||+|||||||++++|||+||+|+|++++. ++|+++...+++ +|.
T Consensus 352 ~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~-~kL~p~~~~iG~----~G~------------------- 407 (460)
T KOG1122|consen 352 ELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPE-VKLVPTGLDIGG----EGR------------------- 407 (460)
T ss_pred HHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCc-eEeccccccCCC----CCc-------------------
Confidence 68999999999999999999999999999999999999984 999999766543 440
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCCCCCCCccccCCccccchhhcccccccchhhhhccccccceeeecccccCCCceEE
Q 010061 83 KFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFI 162 (519)
Q Consensus 83 ~~~~~~i~~SMFpp~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~e~~~~~lercmRi~PH~qdTGGFFI 162 (519)
+....|-| .|.-.-|+|||-+|-.||||
T Consensus 408 ------~~~~~~~p----------------------------------------------sl~~~~r~yPh~hnmdgffv 435 (460)
T KOG1122|consen 408 ------FRGGRFHP----------------------------------------------SLKLTRRFYPHVHNMDGFFV 435 (460)
T ss_pred ------ccCcccCc----------------------------------------------chhheeeecCcccCCchHHH
Confidence 00111222 15678899999999999999
Q ss_pred EEEEecCC
Q 010061 163 AVLQKVSP 170 (519)
Q Consensus 163 Avl~K~~~ 170 (519)
|.|+|.+.
T Consensus 436 aKl~k~s~ 443 (460)
T KOG1122|consen 436 AKLKKASN 443 (460)
T ss_pred HHHHhhcc
Confidence 99999883
No 7
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.54 E-value=2e-14 Score=154.23 Aligned_cols=48 Identities=35% Similarity=0.562 Sum_probs=43.3
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCC
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 51 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~ 51 (519)
+||..|+.+|||||+|||||||++++|||+||.++|++++. ++++++.
T Consensus 360 ~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~-~~~~~~~ 407 (444)
T PRK14902 360 EILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPE-FELVPLQ 407 (444)
T ss_pred HHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCC-cEEeccc
Confidence 58999999999999999999999999999999999998763 7777653
No 8
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=2e-14 Score=154.45 Aligned_cols=47 Identities=34% Similarity=0.550 Sum_probs=42.5
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeC
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 50 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~ 50 (519)
+||.+|+.+|||||+|||||||++|+|||+||.++|+++++ +++++.
T Consensus 358 ~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~-~~~~~~ 404 (445)
T PRK14904 358 ELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPE-FSAEPS 404 (445)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCC-CEEecc
Confidence 58999999999999999999999999999999999998874 665554
No 9
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=2.1e-14 Score=153.90 Aligned_cols=49 Identities=31% Similarity=0.570 Sum_probs=44.3
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCC
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 51 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~ 51 (519)
.+||.+|+++|||||+|||||||++|+|||.||.++|+++++ +++++++
T Consensus 346 ~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~-~~~~~~~ 394 (431)
T PRK14903 346 LRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKD-AEVIDIR 394 (431)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCC-cEEeccc
Confidence 468999999999999999999999999999999999998875 6776653
No 10
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.53 E-value=1.9e-14 Score=153.64 Aligned_cols=42 Identities=36% Similarity=0.564 Sum_probs=39.6
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCC
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 43 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~ 43 (519)
.+||.+|+.+|||||+|||||||++|+|||+||.++|+++++
T Consensus 348 ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~ 389 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPD 389 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCC
Confidence 369999999999999999999999999999999999998864
No 11
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=1.6e-13 Score=146.76 Aligned_cols=45 Identities=38% Similarity=0.606 Sum_probs=40.8
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEe
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 48 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lv 48 (519)
+||.+|+.+|||||+|||||||+++.|||.+|.++|+++++ ++++
T Consensus 353 ~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~-~~~~ 397 (427)
T PRK10901 353 EILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPD-AELL 397 (427)
T ss_pred HHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCC-CEEe
Confidence 68999999999999999999999999999999999998764 5544
No 12
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=2.1e-13 Score=146.08 Aligned_cols=42 Identities=36% Similarity=0.675 Sum_probs=39.3
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCC
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 43 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~ 43 (519)
.+||.+|+.+|||||+|||||||++|+|||.||.++|+++++
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPD 405 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 478999999999999999999999999999999999998753
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1.3e-08 Score=106.82 Aligned_cols=46 Identities=33% Similarity=0.510 Sum_probs=35.3
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEee
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 49 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd 49 (519)
+|+.+|+.+-+ =-++||||||+..+|||.||+.+|...+...++..
T Consensus 326 ~~~~hal~fp~-~k~vvystcs~~reene~vv~d~l~~~p~~~~l~~ 371 (413)
T KOG2360|consen 326 RILKHALTFPN-LKRLVYSTCSLHREENEQVVQEVLQQNPDAKRLAP 371 (413)
T ss_pred HHHHHHhcCCc-hhheeeecchhhhhhhhHHHHHHHhhChhHhhhch
Confidence 46677766322 36899999999999999999999988765555444
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=92.56 E-value=0.29 Score=52.79 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=40.3
Q ss_pred HHHHHHHhcccCCCEEEEEcCC--CChhcCHHHHHHHHHhCCCcEEEeeCC
Q 010061 3 VFVTAGISLLKVGGRIVYSTCS--MNPVENEAVVAEILRKCEGSVELVDVS 51 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCS--lnp~ENEaVV~~~L~~~~~~v~lvd~~ 51 (519)
+|+..|+++|++||.|+++||| +...+=..+|..+....+-.++++...
T Consensus 320 ~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~ 370 (396)
T PRK15128 320 DINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQF 370 (396)
T ss_pred HHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 5677899999999999999999 666666778887777777678888753
No 15
>PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A.
Probab=92.03 E-value=0.17 Score=44.40 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=53.5
Q ss_pred CceEEEEceEeeEEEecCCCCCCCcceeeeccchhhhhhccccCceEEeCHHHHHHHhhcCCCCcccCCChHHHHHHhcC
Q 010061 343 QQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKL 422 (519)
Q Consensus 343 ~~LK~i~~GvK~F~rq~~~~~~~~~C~~RI~qEGl~~l~p~~~kRiv~~s~edl~~LL~~~~~~~~~~~d~e~~e~~~~l 422 (519)
.+|||+..|+++-+..+ -+|+.++.++..+.+...+++|.++.+++..+|....+..+. .
T Consensus 11 ~~l~v~r~Gl~lg~~~k--------~~f~Ps~~la~~~~~~~~~~~iel~~e~a~~yl~Ge~i~~~~------------~ 70 (102)
T PF13636_consen 11 PGLKVLRAGLYLGEIKK--------NRFEPSHALAMALGPEATKNVIELDDEQALRYLRGEDIELDP------------P 70 (102)
T ss_dssp TTSEECECSEEEEEEET--------TEEEEBHHHHHCB--GCCS-EEEETCHHHHHHHCT--EE-SS-------------
T ss_pred CCCeEEecCcEeeeEeC--------CcEEECHHHHHhhCccccceEEECCHHHHHHHHcCCcccCCC------------C
Confidence 68999999999998864 489999999999999988999999999999999987765433 1
Q ss_pred CCceEEEEEe
Q 010061 423 MMGCCVIVLS 432 (519)
Q Consensus 423 ~~Gc~Vl~~~ 432 (519)
.-|=++|.++
T Consensus 71 ~~G~vlv~~~ 80 (102)
T PF13636_consen 71 DKGWVLVTYE 80 (102)
T ss_dssp -EEEEEEEEC
T ss_pred CCcEEEEEEC
Confidence 3477777776
No 16
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=89.66 E-value=0.66 Score=44.60 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=35.8
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCC
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 51 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~ 51 (519)
..+|..+..+|||||++||++|++ ++...+..+|++++..++++.+.
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~ 171 (198)
T PRK00377 125 KEIISASWEIIKKGGRIVIDAILL---ETVNNALSALENIGFNLEITEVI 171 (198)
T ss_pred HHHHHHHHHHcCCCcEEEEEeecH---HHHHHHHHHHHHcCCCeEEEEEe
Confidence 367889999999999999999966 44566677777777566666554
No 17
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=86.10 E-value=1.9 Score=46.74 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=37.0
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcCH--HHHHHHHHhCCCcEEEee
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENE--AVVAEILRKCEGSVELVD 49 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENE--aVV~~~L~~~~~~v~lvd 49 (519)
.+|+..|+++|+|||.+|.||||-+-..++ ..|...+...+..++++.
T Consensus 316 ~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~ 365 (393)
T COG1092 316 KDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIE 365 (393)
T ss_pred HHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEee
Confidence 478999999999999999999999887775 445555555554566665
No 18
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=83.08 E-value=2.2 Score=40.16 Aligned_cols=43 Identities=28% Similarity=0.308 Sum_probs=33.1
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEe
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 48 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lv 48 (519)
++|..+..+||+||++++.+++.+ ++..+..+|.+.+-.++.+
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~---~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLN---GEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccC---ChHHHHHHHHhCCCeEEEE
Confidence 578889999999999999998876 3566677788776444433
No 19
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=78.40 E-value=1.8 Score=44.85 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=23.1
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcC
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVEN 30 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~EN 30 (519)
.+|+.+|+++|++||.|+.||||-+-..+
T Consensus 218 ~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 218 KKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp HHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 36899999999999999999999877665
No 20
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=78.39 E-value=4.2 Score=39.86 Aligned_cols=43 Identities=33% Similarity=0.406 Sum_probs=35.5
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEee
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 49 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd 49 (519)
.||+.++.+||+||+||--. ...||++.....+++.++. +++-
T Consensus 116 ~ile~~~~~l~~ggrlV~na---itlE~~~~a~~~~~~~g~~-ei~~ 158 (187)
T COG2242 116 EILEAAWERLKPGGRLVANA---ITLETLAKALEALEQLGGR-EIVQ 158 (187)
T ss_pred HHHHHHHHHcCcCCeEEEEe---ecHHHHHHHHHHHHHcCCc-eEEE
Confidence 58999999999999999854 3468999999999999873 4433
No 21
>COG3270 Uncharacterized conserved protein [Function unknown]
Probab=74.85 E-value=2.5 Score=38.88 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=56.2
Q ss_pred CceEEEEceEeeEEEecCCCCCCCcceeeeccchhhhhhccccCceEEeCHHHHHHHhhcCCCCcccCCChHHHHHHhcC
Q 010061 343 QQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKL 422 (519)
Q Consensus 343 ~~LK~i~~GvK~F~rq~~~~~~~~~C~~RI~qEGl~~l~p~~~kRiv~~s~edl~~LL~~~~~~~~~~~d~e~~e~~~~l 422 (519)
..+|| |.|+++-+-++ .+||+|.||.-+|.|--.+..|+++.++++.....+++.... +.
T Consensus 33 ~k~~~-r~GI~lg~~~k--------kg~r~s~e~~~al~p~~~~nsiELd~e~a~~w~rG~dV~~~~-----------~~ 92 (127)
T COG3270 33 FKEKI-HNGIKLGEIHK--------KGYRWSHEGGFALAPPAVRNSIELDEEEAREWMRGRDVEPQE-----------SG 92 (127)
T ss_pred hhhhh-hcceEEEEEec--------cCeeEEeeEEEEeCChhhcceEEeCHHHHHhhhcCCccccCC-----------CC
Confidence 46889 99999988774 599999999999999877789999999999999987764421 12
Q ss_pred CCceEEEEEe
Q 010061 423 MMGCCVIVLS 432 (519)
Q Consensus 423 ~~Gc~Vl~~~ 432 (519)
..|=|+|++.
T Consensus 93 ~~g~viv~~~ 102 (127)
T COG3270 93 PAGWVIVKFQ 102 (127)
T ss_pred CCceEEEEEC
Confidence 3466777776
No 22
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=73.29 E-value=4 Score=38.66 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=28.9
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCC
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 42 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~ 42 (519)
+++..+.++||+||+++++... .++..-+..++++++
T Consensus 112 ~~l~~~~~~Lk~gG~lv~~~~~---~~~~~~~~~~l~~~g 148 (187)
T PRK08287 112 AIIDWSLAHLHPGGRLVLTFIL---LENLHSALAHLEKCG 148 (187)
T ss_pred HHHHHHHHhcCCCeEEEEEEec---HhhHHHHHHHHHHCC
Confidence 5788899999999999997543 456666777888776
No 23
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=72.29 E-value=8.5 Score=44.62 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=33.6
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeC
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 50 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~ 50 (519)
+|+..++.+|++||.|++++|+-+-..+ ..++...+-.++++..
T Consensus 637 ~l~~~a~~lL~~gG~l~~~~~~~~~~~~----~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 637 ALIKDAKRLLRPGGTLYFSNNKRGFKMD----EEGLAKLGLKAEEITA 680 (702)
T ss_pred HHHHHHHHHcCCCCEEEEEeCCccCChh----HHHHHhCCCeEEEEec
Confidence 5788999999999999999999776543 5555555555666654
No 24
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=64.00 E-value=16 Score=38.59 Aligned_cols=74 Identities=23% Similarity=0.331 Sum_probs=46.5
Q ss_pred HHHHHHHhcccCCCEEE-EEcCCCChhcCHHHHHHHHHhCCCcEEEeeCCCCCCcccCCCCccc-ceecCCCccccchhh
Q 010061 3 VFVTAGISLLKVGGRIV-YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRK-WKVRDKGIWLASHKH 80 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lV-YSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~~~lp~l~~~pGl~~-W~v~~~~~~~~~~~~ 80 (519)
+.|..|..+|+|||+|+ .|=||+-. .+|.++.+.+.. ..++..||-. .+|-.. .+...+.....+.++
T Consensus 225 ~~L~~a~~~L~~gGRl~VIsFHSLED----RiVK~ff~~~s~----~~~p~~lP~~--~~~~~~~~~~itkK~i~ps~~E 294 (314)
T COG0275 225 EALEAALDLLKPGGRLAVISFHSLED----RIVKNFFKELSK----PGVPKGLPVT--EEGPALKFKLITKKPIMPSEEE 294 (314)
T ss_pred HHHHHHHHhhCCCcEEEEEEecchHH----HHHHHHHHHhcc----cCCCCCCCcc--cccccchhhhccCCCcCCCHHH
Confidence 45788999999999864 45566544 778888887532 5566666642 222112 244445556677777
Q ss_pred hhhhhh
Q 010061 81 VRKFRR 86 (519)
Q Consensus 81 v~~~~~ 86 (519)
+..+-|
T Consensus 295 i~~NpR 300 (314)
T COG0275 295 IEANPR 300 (314)
T ss_pred HHhCcc
Confidence 766543
No 25
>PRK07402 precorrin-6B methylase; Provisional
Probab=57.61 E-value=18 Score=34.57 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=26.3
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhC
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 41 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~ 41 (519)
++|..++.+|+|||++++.++++. .-..+...++..
T Consensus 123 ~~l~~~~~~LkpgG~li~~~~~~~---~~~~~~~~~~~~ 158 (196)
T PRK07402 123 EILQAVWQYLKPGGRLVATASSLE---GLYAISEGLAQL 158 (196)
T ss_pred HHHHHHHHhcCCCeEEEEEeecHH---HHHHHHHHHHhc
Confidence 678899999999999999998743 223344555544
No 26
>PRK14967 putative methyltransferase; Provisional
Probab=54.48 E-value=30 Score=33.76 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=26.9
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEe
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 48 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lv 48 (519)
+++..+..+||+||++++.+-+++.. ..+-..++..+-.++.+
T Consensus 140 ~~l~~a~~~Lk~gG~l~~~~~~~~~~---~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 140 RLCDAAPALLAPGGSLLLVQSELSGV---ERTLTRLSEAGLDAEVV 182 (223)
T ss_pred HHHHHHHHhcCCCcEEEEEEecccCH---HHHHHHHHHCCCCeEEE
Confidence 46788999999999999755444322 23445556555344433
No 27
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=51.43 E-value=23 Score=34.30 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=24.6
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHh
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 40 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~ 40 (519)
.+|.++.++|||||+++++|+ ++..+.++++.
T Consensus 137 ~~l~~i~~~LkpgG~l~i~~~------~~~~~~~~~~~ 168 (202)
T PRK00121 137 EFLALYARKLKPGGEIHFATD------WEGYAEYMLEV 168 (202)
T ss_pred HHHHHHHHHcCCCCEEEEEcC------CHHHHHHHHHH
Confidence 578899999999999999986 44555555543
No 28
>PRK14968 putative methyltransferase; Provisional
Probab=51.06 E-value=29 Score=32.06 Aligned_cols=37 Identities=32% Similarity=0.327 Sum_probs=27.3
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCC
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 42 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~ 42 (519)
.++..+..+||+||.+++..+|+... .-+..++.+.+
T Consensus 129 ~~i~~~~~~Lk~gG~~~~~~~~~~~~---~~l~~~~~~~g 165 (188)
T PRK14968 129 RFLDEVGRYLKPGGRILLLQSSLTGE---DEVLEYLEKLG 165 (188)
T ss_pred HHHHHHHHhcCCCeEEEEEEcccCCH---HHHHHHHHHCC
Confidence 46889999999999999888877543 23455666655
No 29
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=49.20 E-value=14 Score=37.79 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.1
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCCh
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNP 27 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp 27 (519)
.+|..+++||||||.|+.||=--++
T Consensus 142 ~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 142 SFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred HHHHHHHHHcCCCcEEEEeccccCH
Confidence 4788899999999999999966444
No 30
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=41.93 E-value=27 Score=32.74 Aligned_cols=37 Identities=32% Similarity=0.370 Sum_probs=26.4
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCCh---hcCHHHHHHHH
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNP---VENEAVVAEIL 38 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp---~ENEaVV~~~L 38 (519)
+.-|..|+.+|++||+|+-..=.=+| +|-++|..|+-
T Consensus 72 l~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~ 111 (140)
T PF06962_consen 72 LKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLA 111 (140)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45688999999999988764444454 67788776654
No 31
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=41.25 E-value=21 Score=37.60 Aligned_cols=78 Identities=24% Similarity=0.278 Sum_probs=40.1
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCCCCCCcccCCCCcccceecCCCccccchhhhh
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVR 82 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~~~lp~l~~~pGl~~W~v~~~~~~~~~~~~v~ 82 (519)
+.|..|..+|+|||+|+- =||+..|+-- |.++++.+... ..++..+|.. .......|+...+.....+-+++.
T Consensus 222 ~~L~~a~~~L~~gGrl~V--ISFHSLEDRi-VK~~f~~~~~~---~~~p~~lp~~-~~~~~~~~~~i~kk~i~ps~~Ei~ 294 (310)
T PF01795_consen 222 RGLEAAPDLLKPGGRLVV--ISFHSLEDRI-VKQFFRELAKS---CKCPPGLPVC-ECGKHPKFKLITKKPITPSEEEIE 294 (310)
T ss_dssp HHHHHHHHHEEEEEEEEE--EESSHHHHHH-HHHHHHCCSSC----------------------EESESS-B---HHHHH
T ss_pred HHHHHHHHHhcCCcEEEE--EEecchhhHH-HHHHHHHhccc---CCCccccccc-ccccccceEEccCCccCCChhhhh
Confidence 468889999999999875 4688888865 56777655321 1233334431 112233477666666778888887
Q ss_pred hhhhc
Q 010061 83 KFRRI 87 (519)
Q Consensus 83 ~~~~~ 87 (519)
.+-|+
T Consensus 295 ~NpRs 299 (310)
T PF01795_consen 295 ENPRS 299 (310)
T ss_dssp H-GGG
T ss_pred cCCch
Confidence 76554
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=40.48 E-value=39 Score=35.53 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=20.9
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCCh
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNP 27 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp 27 (519)
..|....+.|||||+||.+|..+..
T Consensus 206 ~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 206 EHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred HHHHHHHHhcCCCCEEEEEEEEecC
Confidence 5788889999999999999876543
No 33
>KOG3492 consensus Ribosome biogenesis protein NIP7 [Translation, ribosomal structure and biogenesis]
Probab=37.34 E-value=1.1e+02 Score=29.36 Aligned_cols=120 Identities=20% Similarity=0.357 Sum_probs=71.3
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEeecCCC----CcceEEEEeCHHHHHHHHhcccCCCceEEEEceEeeEEEecCCCCCC
Q 010061 290 TIINSIKTFYGIDDSFQLSGQLVSRNGDT----NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNS 365 (519)
Q Consensus 290 ~~~~~I~~fYgI~~~FP~~~~Lv~Rn~~g----~~~k~IYyvS~~vk~Il~~N~~~g~~LK~i~~GvK~F~rq~~~~~~~ 365 (519)
.+++.+..|-|=.-+ +|+.|.... .+..++||+|+-+...-. +. .+=++++.|. .|.|..-
T Consensus 11 ~vfekla~yIG~Nv~-----~lidr~D~~~cfrlhkdRVyyvsEr~~k~a~-~i---sr~~L~s~Gt-c~GKFTK----- 75 (180)
T KOG3492|consen 11 VVFEKLAKYIGDNVS-----HLIDRPDGTYCFRLHKDRVYYVSERIMKLAA-CI---SRKNLVSLGT-CFGKFTK----- 75 (180)
T ss_pred HHHHHHHHHHhhhhh-----eeecCCCCceeeEeeCceEEeehHHHHHHHh-hh---cccceeEEeE-EEeeeec-----
Confidence 568888888876522 333333221 245789999999887643 33 4667888886 4555431
Q ss_pred CcceeeeccchhhhhhccccCce-EEeCHHHHHHHhhcCCCCcccCCChHHHHHHhcCCCceEEEEEe
Q 010061 366 APCSFRISSEGLPVILPYITKQI-LYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLS 432 (519)
Q Consensus 366 ~~C~~RI~qEGl~~l~p~~~kRi-v~~s~edl~~LL~~~~~~~~~~~d~e~~e~~~~l~~Gc~Vl~~~ 432 (519)
.-.||+.--+|.+|.||..-.+ |.-+.| ...|. ..++ ...-++.--+++..+.-|+++.
T Consensus 76 -t~kfrlhitaL~~La~~Ak~KvWiKp~~E-m~flY-GNhv-----lKs~vgRitd~~p~~~GVvVys 135 (180)
T KOG3492|consen 76 -TGKFRLHITALDYLAPYAKYKVWIKPNAE-MQFLY-GNHV-----LKSGVGRITDGIPQHQGVVVYS 135 (180)
T ss_pred -cceEEEeeeehhhhhhhhheeEEeccCcc-cceee-cccc-----hhcccceecCCCCCcceEEEEe
Confidence 2489999999999999976433 444433 22222 2222 1122333344556666676666
No 34
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=36.28 E-value=77 Score=33.43 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=17.2
Q ss_pred HHHHHHHhcccCCCEEEEEc
Q 010061 3 VFVTAGISLLKVGGRIVYST 22 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYST 22 (519)
.+|....++|||||+++.+|
T Consensus 216 ~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 216 EFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HHHHHHHHHcCCCcEEEEEE
Confidence 46777888999999999986
No 35
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=35.98 E-value=53 Score=36.12 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCCCCCCCCceEeecCC-CCcceEEEEeCHHHHHHHHhcccCCCceEEEEceEeeEEEecCCCC
Q 010061 291 IINSIKTFYGIDDSFQLSGQLVSRNGD-TNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREG 363 (519)
Q Consensus 291 ~~~~I~~fYgI~~~FP~~~~Lv~Rn~~-g~~~k~IYyvS~~vk~Il~~N~~~g~~LK~i~~GvK~F~rq~~~~~ 363 (519)
.....++-.||.+-|++=-.+|+...- -.....+.|=.+.++++...=.. -| =+|+-|.....
T Consensus 199 ~h~~af~~~GL~~aw~rvi~vVVQpGvef~~~~V~~y~~~~A~~Ls~~~~~---------~~-lvfEaHSTDYQ 262 (421)
T PRK15052 199 THQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALSAWIEN---------TP-MVYEAHSTDYQ 262 (421)
T ss_pred HHHHHHHHcCchhhhccceEEEEeCCeeeCCCCeeecCHHHHHHHHHHhcC---------CC-EEEeecCcccC
Confidence 344556677898889886666654311 02567889988888887532211 11 26888876543
No 36
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=35.62 E-value=76 Score=30.32 Aligned_cols=46 Identities=30% Similarity=0.425 Sum_probs=31.6
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCC-CcEEEeeCCC
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE-GSVELVDVSN 52 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~-~~v~lvd~~~ 52 (519)
.++..+.++|||||+++.. .....+..+..+.+++. ..++++++..
T Consensus 123 ~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 123 VLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred HHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHhhhhcCceEeeccc
Confidence 4667778999999999975 34555666666666632 1277777753
No 37
>PRK04266 fibrillarin; Provisional
Probab=35.60 E-value=68 Score=31.97 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.5
Q ss_pred HHHHHHhcccCCCEEEEE
Q 010061 4 FVTAGISLLKVGGRIVYS 21 (519)
Q Consensus 4 IL~ra~~lLk~GG~lVYS 21 (519)
+|..+..+|||||++|.+
T Consensus 158 ~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 158 AIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 467888999999999885
No 38
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=35.08 E-value=77 Score=30.69 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=28.3
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcE
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSV 45 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v 45 (519)
.++..+.++|||||++++.-++-.+ ..+..+....|..+
T Consensus 126 ~~l~~~~~~LkpGG~lv~~~~~~~~----~~l~~~~~~~~~~~ 164 (187)
T PRK00107 126 DLVELCLPLLKPGGRFLALKGRDPE----EEIAELPKALGGKV 164 (187)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCChH----HHHHHHHHhcCceE
Confidence 4678889999999999998766444 44666666666543
No 39
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=34.27 E-value=76 Score=33.44 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=45.6
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCCCCCCcccCCCCcccceecCCCccccchhhhh
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVR 82 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~~~lp~l~~~pGl~~W~v~~~~~~~~~~~~v~ 82 (519)
+.|..|..+|+|||+|+- =||+..|+--| ..+++.+... .++..+|-. ..+ .|+...+.....+.+++.
T Consensus 221 ~~L~~~~~~L~~gGrl~V--ISfHSLEDRiV-K~~f~~~~~~----~~~~~~~~~--~~~--~~~~lt~k~i~ps~~Ei~ 289 (305)
T TIGR00006 221 EALQFAPNLLAPGGRLSI--ISFHSLEDRIV-KNFFRELSKF----PQPPGLPVK--ETP--LYALITKKPITPSEEEIK 289 (305)
T ss_pred HHHHHHHHHhcCCCEEEE--EecCcHHHHHH-HHHHHHhccc----CCCCCCCcc--ccc--ceeEccCCCcCCCHHHHH
Confidence 568889999999999874 57888888655 5555554211 123334421 112 377666665667777777
Q ss_pred hhhh
Q 010061 83 KFRR 86 (519)
Q Consensus 83 ~~~~ 86 (519)
.+-|
T Consensus 290 ~NpR 293 (305)
T TIGR00006 290 ENPR 293 (305)
T ss_pred hCcc
Confidence 6644
No 40
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=32.25 E-value=65 Score=34.19 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=24.7
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhc
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVE 29 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~E 29 (519)
+++..|.++||+||.|++.++++.|-+
T Consensus 284 ~~i~~a~~~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 284 TLIRGAVRHLNSGGELRIVANAFLPYP 310 (342)
T ss_pred HHHHHHHHhcCcCCEEEEEEeCCCChH
Confidence 678999999999999999999999866
No 41
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=31.73 E-value=36 Score=35.43 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=31.1
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCC
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 42 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~ 42 (519)
.+-|..|...|||||++. |=..+.+|.+.+.|+-+.+-
T Consensus 194 ~k~l~EAYRVLKpGGrf~---cLeFskv~~~~l~~fy~~ys 231 (296)
T KOG1540|consen 194 QKALREAYRVLKPGGRFS---CLEFSKVENEPLKWFYDQYS 231 (296)
T ss_pred HHHHHHHHHhcCCCcEEE---EEEccccccHHHHHHHHhhh
Confidence 366889999999999876 88777777777799998763
No 42
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=31.47 E-value=73 Score=35.11 Aligned_cols=50 Identities=30% Similarity=0.436 Sum_probs=27.8
Q ss_pred cccCCC-EEEEEcCCCChhcCHHHHHHHHHhCCC---cEEEeeCCCCCCcccCCCCcccce
Q 010061 11 LLKVGG-RIVYSTCSMNPVENEAVVAEILRKCEG---SVELVDVSNEVPQLIHRPGLRKWK 67 (519)
Q Consensus 11 lLk~GG-~lVYSTCSlnp~ENEaVV~~~L~~~~~---~v~lvd~~~~lp~l~~~pGl~~W~ 67 (519)
.=|.|. .=|||-||.|| .|+.++|++... .+-+.-.++..-.+ -|++.|+
T Consensus 10 ~~k~G~~~gI~SVCsahp----~VieAAl~~a~~~~~pvLiEAT~NQVnq~---GGYTGmt 63 (424)
T PF08013_consen 10 RHKAGEPVGIYSVCSAHP----LVIEAALERAKEDDSPVLIEATSNQVNQF---GGYTGMT 63 (424)
T ss_dssp HHHTT--B-EEEE----H----HHHHHHHHHCCCS-S-EEEEEETTTCSTT----TTTTB-
T ss_pred HHhCCCCCceEEecCCCH----HHHHHHHHHHHhcCCeEEEEecccccccc---CCcCCCC
Confidence 334554 56999999999 899999986532 35556666665543 4677664
No 43
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=31.37 E-value=59 Score=33.40 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=31.9
Q ss_pred HHHHHHHhcccCCCEEEEEcC---C---CCh------hcCHHHHHHHHHhCCCcEEEeeCC
Q 010061 3 VFVTAGISLLKVGGRIVYSTC---S---MNP------VENEAVVAEILRKCEGSVELVDVS 51 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTC---S---lnp------~ENEaVV~~~L~~~~~~v~lvd~~ 51 (519)
+.|.+...||||||.||.... | +-. -=||+.|..+|+..| +.+++..
T Consensus 180 ~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG--~~i~~~~ 238 (256)
T PF01234_consen 180 RALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAG--FDIEDLE 238 (256)
T ss_dssp HHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTT--EEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcC--CEEEecc
Confidence 467888999999999986432 1 111 125689999999876 6666654
No 44
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=31.09 E-value=88 Score=32.80 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=18.8
Q ss_pred HHHHHHHHhcccCCCEEEEEcC
Q 010061 2 VVFVTAGISLLKVGGRIVYSTC 23 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTC 23 (519)
..+|..+...|||||++|.+|-
T Consensus 206 ~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 206 LDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred HHHHHHHHHhcCCCcEEEEEEE
Confidence 3678899999999999998863
No 45
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=30.69 E-value=92 Score=31.74 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=24.9
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHH
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 39 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~ 39 (519)
+|+..|..+|++||.+++-++.-.. ..|..++.
T Consensus 225 ~ii~~a~~~L~~gG~l~~e~g~~q~----~~~~~~~~ 257 (284)
T TIGR00536 225 QIIELAPDYLKPNGFLVCEIGNWQQ----KSLKELLR 257 (284)
T ss_pred HHHHHHHHhccCCCEEEEEECccHH----HHHHHHHH
Confidence 6889999999999999998875433 34455555
No 46
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=29.86 E-value=44 Score=32.01 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=18.0
Q ss_pred HHHHHHHhcccCCCEEEEEc
Q 010061 3 VFVTAGISLLKVGGRIVYST 22 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYST 22 (519)
++|..+..+|||||.|+.+|
T Consensus 113 ~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 113 HFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHHHHHHhCCCCEEEEEe
Confidence 57888999999999999887
No 47
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=29.54 E-value=1.1e+02 Score=29.56 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=21.1
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCCh
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNP 27 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp 27 (519)
.+|.++..+|++||+++.+++.-++
T Consensus 132 ~~l~~~~~~L~~gG~l~v~~~~~~~ 156 (233)
T PRK05134 132 SFVRACAKLVKPGGLVFFSTLNRNL 156 (233)
T ss_pred HHHHHHHHHcCCCcEEEEEecCCCh
Confidence 5788899999999999999886444
No 48
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=28.89 E-value=1.2e+02 Score=29.03 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=17.9
Q ss_pred HHHHHHHhcccCCCEEEEEcC
Q 010061 3 VFVTAGISLLKVGGRIVYSTC 23 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTC 23 (519)
.++..+..+|||||+++.++-
T Consensus 85 ~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 85 DLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHHHHHcCCCCEEEEEEc
Confidence 577888999999999998764
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=28.47 E-value=22 Score=39.06 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=26.1
Q ss_pred EeCHHHHHHHhhcCCCCcccCCChHHHHHHhcCCCceEEEEEeC
Q 010061 390 YASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSK 433 (519)
Q Consensus 390 ~~s~edl~~LL~~~~~~~~~~~d~e~~e~~~~l~~Gc~Vl~~~~ 433 (519)
..+.+|++.|++..-.-++-. -++.+...-.-|||+|.+..
T Consensus 45 t~sE~dlr~lFe~yg~V~ein---l~kDk~t~~s~gcCFv~~~t 85 (510)
T KOG0144|consen 45 TASEKDLRELFEKYGNVYEIN---LIKDKSTGQSKGCCFVKYYT 85 (510)
T ss_pred cccHHHHHHHHHHhCceeEEE---eecccccCcccceEEEEecc
Confidence 567899999997533222211 13444555678999998874
No 50
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=28.25 E-value=86 Score=34.58 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCCCCCCCCceEeecCCC--CcceEEEEeCHHHHHHHHhcccCCCceEEEEceEeeEEEecCCCC
Q 010061 291 IINSIKTFYGIDDSFQLSGQLVSRNGDT--NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREG 363 (519)
Q Consensus 291 ~~~~I~~fYgI~~~FP~~~~Lv~Rn~~g--~~~k~IYyvS~~vk~Il~~N~~~g~~LK~i~~GvK~F~rq~~~~~ 363 (519)
.....++-.||.+-|++=-.+|+.- +. .+...+.|=.+.++++...=. .-+.=+|+-|+....
T Consensus 203 ~h~~af~~~GL~~aw~rvi~~VVQp-GVef~~~~V~~y~~~~A~~Ls~~~~---------~~~~lvfEaHSTDYQ 267 (426)
T PRK15458 203 AHRHAFEKQGLNAIWPRIIGLVVQP-GVEFDHTNVIDYQPEKASALSQMVE---------NYETLVFEAHSTDYQ 267 (426)
T ss_pred HHHHHHHHcCchhhhccceEEEEeC-CeeecCcCccccCHHHHHHHHHHHH---------hCCCceeecCCccCC
Confidence 3445566778988898866666543 21 346778888888888753211 125568998876553
No 51
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=27.59 E-value=34 Score=30.44 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=19.3
Q ss_pred HHHHHHHhcccCCCEEEEEcCCC
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSM 25 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSl 25 (519)
.+|.+...+|||||+++.++=..
T Consensus 96 ~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 96 EFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHHHHhcCCCCEEEEEEcCC
Confidence 57889999999999999988443
No 52
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=27.30 E-value=47 Score=32.74 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=18.6
Q ss_pred HHHHHHHhcccCCCEEEEEcC
Q 010061 3 VFVTAGISLLKVGGRIVYSTC 23 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTC 23 (519)
.+|.++..+|||||.+++||-
T Consensus 121 ~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 121 TALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred HHHHHHHHHcCCCeEEEEEeC
Confidence 578889999999999999974
No 53
>PRK11630 hypothetical protein; Provisional
Probab=27.22 E-value=76 Score=31.24 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=30.3
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChh----cCHHHHHHHHH
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPV----ENEAVVAEILR 39 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~----ENEaVV~~~L~ 39 (519)
+.+.+|.++|+.||.++|-|=|..-. .|++-|+.+.+
T Consensus 15 ~~i~~a~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~ 55 (206)
T PRK11630 15 RLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICR 55 (206)
T ss_pred HHHHHHHHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHH
Confidence 35789999999999999999776654 67788888765
No 54
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=27.12 E-value=93 Score=34.26 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCCCCCCCCceEeecCCC-CcceEEEEeCHHHHHHHHhcccCCCceEEEEceEeeEEEecCCCC
Q 010061 291 IINSIKTFYGIDDSFQLSGQLVSRNGDT-NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREG 363 (519)
Q Consensus 291 ~~~~I~~fYgI~~~FP~~~~Lv~Rn~~g-~~~k~IYyvS~~vk~Il~~N~~~g~~LK~i~~GvK~F~rq~~~~~ 363 (519)
..+..++-.||.+-|++=-.+|+...-. .....+.|=.+.++++...=. .-+.=+|+-|+....
T Consensus 199 ~h~~af~~~GL~~aw~rvi~~VVQpGvef~~~~V~~y~~~~A~~Ls~~~~---------~~~~lvfEaHSTDYQ 263 (420)
T TIGR02810 199 AHRKAFAARGLEDAWPRVIALVVQPGVEFDHHNVIHYQPERAQALSQVID---------NTPGLVFEAHSTDYQ 263 (420)
T ss_pred HHHHHHHHcCchhhhccceEEEecCCeeECCCceeecCHHHHHHHHHHHH---------hCCCceeecCCccCC
Confidence 3445566778988898866666543110 256788998888888753221 235668998876543
No 55
>PRK08317 hypothetical protein; Provisional
Probab=27.11 E-value=57 Score=30.96 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.2
Q ss_pred HHHHHHHhcccCCCEEEEEcCC
Q 010061 3 VFVTAGISLLKVGGRIVYSTCS 24 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCS 24 (519)
.++.+...+|||||.++.+.|.
T Consensus 105 ~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 105 RALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred HHHHHHHHHhcCCcEEEEEecC
Confidence 5788999999999999998765
No 56
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=26.60 E-value=78 Score=29.90 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=17.4
Q ss_pred HHHHHHHhcccCCCEEEEEc
Q 010061 3 VFVTAGISLLKVGGRIVYST 22 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYST 22 (519)
.+|..++.+|+|||+++...
T Consensus 127 ~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 127 LALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHHccCCCEEEEEE
Confidence 57888999999999999864
No 57
>PF03657 UPF0113: Uncharacterised protein family (UPF0113); InterPro: IPR005155 This entry represents PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain containing proteins such as the ribosomal biogenesis factor NIP7 [, ]. PUA domains are predicted to bind RNA molecules with complex folded structures []. NIP7 is required for efficient 60S ribosome subunit biogenesis and has been shown to interact with another essential nucleolar protein, Nop8p, and the exosome subunit Rrp43p. These three proteins are required for 60S subunit synthesis and may be part of a dynamic complex involved in this process.; PDB: 1T5Y_A 1SQW_A 2P38_A.
Probab=25.66 E-value=36 Score=32.61 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=46.8
Q ss_pred cceEEEEeCHHHHHHHHhcccCCCceEEEEceEeeEEEecCCCCCCCcceeeeccchhhhhhccccCceEEeCHHHHHHH
Q 010061 320 RVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHL 399 (519)
Q Consensus 320 ~~k~IYyvS~~vk~Il~~N~~~g~~LK~i~~GvK~F~rq~~~~~~~~~C~~RI~qEGl~~l~p~~~kRiv~~s~edl~~L 399 (519)
..+++||+|..+...++. +.+.++.|+-+=. -. +.+ -.||++-+++.++.+|... .|.++..--+.+
T Consensus 38 ~~~~Vyyvs~~l~~~~~~------~~~~~s~G~~~G~-f~-k~~----~kf~l~i~~l~~la~~~~~-kvwvk~~~e~~F 104 (162)
T PF03657_consen 38 HKDRVYYVSEELMKLASN------RPNLYSLGTCLGK-FT-KKG----KKFRLHITALDYLAPYAKN-KVWVKPKAEMLF 104 (162)
T ss_dssp CTCEEEEEEHHHHCCCTT------CHHHHCCSEEEEE-E--TTT----SEEEEEGHHHHCCCCC-SS-EEEE-HHHHHHH
T ss_pred ecceEEEECHHHHHHHhC------CCccceeceEEEE-Ee-cCC----ccceeeHHHHHHhhhccce-eEEECCCceEEe
Confidence 358999999998776532 4556677765433 11 111 3899999999999999966 677765545555
Q ss_pred hhcCCC
Q 010061 400 LQYKTI 405 (519)
Q Consensus 400 L~~~~~ 405 (519)
|=+.++
T Consensus 105 LYGndV 110 (162)
T PF03657_consen 105 LYGNDV 110 (162)
T ss_dssp CTT--E
T ss_pred eecCCc
Confidence 655554
No 58
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=24.90 E-value=57 Score=32.61 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.4
Q ss_pred HHHHHHHhcccCCCEEEEEcC
Q 010061 3 VFVTAGISLLKVGGRIVYSTC 23 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTC 23 (519)
++|..++++|||||+++.+.-
T Consensus 164 ~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 164 RVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred HHHHHHHHHcCCCcEEEEEEe
Confidence 578999999999999998754
No 59
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=24.70 E-value=1.3e+02 Score=31.56 Aligned_cols=66 Identities=26% Similarity=0.321 Sum_probs=41.6
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEeeCCCCCCcccCCCC-cccceecCCCccccchhhh
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPG-LRKWKVRDKGIWLASHKHV 81 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lvd~~~~lp~l~~~pG-l~~W~v~~~~~~~~~~~~v 81 (519)
+.|..|..+|++||+|+- =||+-.|+--| .++++.+...- ++ -..|+...+.....+.+++
T Consensus 217 ~~L~~~~~~L~~gGrl~v--isfHSlEDriV-K~~f~~~~~~~---------------~~~~~~~~~~~~k~i~ps~~Ei 278 (296)
T PRK00050 217 RALEAALDLLKPGGRLAV--ISFHSLEDRIV-KRFFRELSKGC---------------CGNKPKLKLLTKKPIKPSEEEI 278 (296)
T ss_pred HHHHHHHHHhcCCCEEEE--EecCcHHHHHH-HHHHHHhcccc---------------cccCCceEEcCCCCcCCCHHHH
Confidence 568889999999999764 46777787554 66555542110 11 1235555555566777777
Q ss_pred hhhhh
Q 010061 82 RKFRR 86 (519)
Q Consensus 82 ~~~~~ 86 (519)
..+-|
T Consensus 279 ~~NpR 283 (296)
T PRK00050 279 AANPR 283 (296)
T ss_pred HhCcc
Confidence 76544
No 60
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=23.84 E-value=1.4e+02 Score=29.67 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=18.2
Q ss_pred HHHHHHHhcccCCCEEEEEcCCC
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSM 25 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSl 25 (519)
.+|..+..+|||||+|+....+.
T Consensus 130 ~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 130 SVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred HHHHHHHHHcCCCeEEEEEEECc
Confidence 56888999999999997654443
No 61
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=23.74 E-value=62 Score=30.58 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=19.4
Q ss_pred HHHHHHHHhcccCCCEEEEEcCC
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCS 24 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCS 24 (519)
..+|.++..+|++||+++..+.+
T Consensus 123 ~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 123 QKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred HHHHHHHHHHcCCCcEEEEEEec
Confidence 36789999999999999987665
No 62
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=23.56 E-value=31 Score=31.20 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.5
Q ss_pred HHHHHHHHhcccCCCEEEE
Q 010061 2 VVFVTAGISLLKVGGRIVY 20 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVY 20 (519)
.+.+.+...+|+|||++|-
T Consensus 24 ~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 24 KRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhhCCCCEEEE
Confidence 5678899999999999985
No 63
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=23.44 E-value=3.8e+02 Score=30.64 Aligned_cols=124 Identities=12% Similarity=0.101 Sum_probs=76.4
Q ss_pred ChHHHHHH-HHHhCCCCCCCCCCceEeecCCCCcc---eEEEEeCHHHHHHHHhcccCCCceEEEEceEeeEEEecCCCC
Q 010061 288 DETIINSI-KTFYGIDDSFQLSGQLVSRNGDTNRV---KRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREG 363 (519)
Q Consensus 288 d~~~~~~I-~~fYgI~~~FP~~~~Lv~Rn~~g~~~---k~IYyvS~~vk~Il~~N~~~g~~LK~i~~GvK~F~rq~~~~~ 363 (519)
-+.+|..| +.-||-+ .+++.|++.|-+. +.=||=.-.++.|+..-. ..-+|+++-...=++......-.
T Consensus 267 reai~hAi~r~N~Gct------h~ivGrdhAg~~~~~~~g~~Y~~~~a~~i~~~~~-~~l~i~~~~~~~~~Y~~~~~~~~ 339 (568)
T PRK05537 267 REALWHAIIRRNYGCT------HFIVGRDHAGPGKDSRGKPFYGPYDAQELFAKYA-DEIGITMVPFKEMVYVQDKAQYV 339 (568)
T ss_pred HHHHHHHHHHHhCCCC------eEEECCCCCCCCCCCcCcccCCchHHHHHHHhCc-cccCceEEecceeEEEcCCCeEE
Confidence 45677775 7899998 2788899887311 122888888888986542 33567777766555554422111
Q ss_pred CCCcceeeeccchhhhhhccccCceEEeCHHHHHHHhhcCCCCcccCCChHHHHHHhc-----CCCceEEEEEe
Q 010061 364 NSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASK-----LMMGCCVIVLS 432 (519)
Q Consensus 364 ~~~~C~~RI~qEGl~~l~p~~~kRiv~~s~edl~~LL~~~~~~~~~~~d~e~~e~~~~-----l~~Gc~Vl~~~ 432 (519)
....| |+ +++.+.+|-+.++.+|......-+.|.-+|+.+-+.. ...|++|+.+-
T Consensus 340 ~~~~c-------------ph-~~~~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~G 399 (568)
T PRK05537 340 PVDEV-------------PQ-GATVLTISGTELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTG 399 (568)
T ss_pred ecCcC-------------CC-CcceeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEEC
Confidence 11123 43 3457888889999999865544444555555544443 35677766654
No 64
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=21.78 E-value=86 Score=32.08 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=21.0
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcC
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVEN 30 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~EN 30 (519)
.+||.++.+.|||||+|+-....++..++
T Consensus 234 ~~il~~~~~~L~pgG~l~i~d~~~~~~~~ 262 (306)
T TIGR02716 234 TIMCKKAFDAMRSGGRLLILDMVIDDPEN 262 (306)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeccCCCCC
Confidence 46888899999999988776655544333
No 65
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.26 E-value=72 Score=32.54 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=16.2
Q ss_pred HHHHHHHhcccCCCEEEE
Q 010061 3 VFVTAGISLLKVGGRIVY 20 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVY 20 (519)
....|+++|||+||.|+|
T Consensus 164 ~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 164 NYYERLLRLLRVGGVIVV 181 (237)
T ss_pred HHHHHHHhhcccccEEEE
Confidence 457899999999999999
No 66
>PRK04457 spermidine synthase; Provisional
Probab=20.71 E-value=2.7e+02 Score=28.20 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=30.4
Q ss_pred HHHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCCCcEEEe
Q 010061 2 VVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 48 (519)
Q Consensus 2 ~~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~~~v~lv 48 (519)
.+++..+..+|+|||+++.-.++-.+. -..+++.+-..+++.+-.+
T Consensus 157 ~efl~~~~~~L~pgGvlvin~~~~~~~-~~~~l~~l~~~F~~~~~~~ 202 (262)
T PRK04457 157 QPFFDDCRNALSSDGIFVVNLWSRDKR-YDRYLERLESSFEGRVLEL 202 (262)
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCCchh-HHHHHHHHHHhcCCcEEEE
Confidence 367889999999999999876655443 2445565555555433333
No 67
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=20.39 E-value=1.3e+02 Score=30.39 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=24.0
Q ss_pred HHHHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHH
Q 010061 3 VFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 39 (519)
Q Consensus 3 ~IL~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~ 39 (519)
+.+..+..+|++||+++..+||.. -+...+..+++
T Consensus 167 ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~~~~ 201 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQSESPW--IQLELITDLKR 201 (270)
T ss_pred HHHHHHHHHhCCCcEEEEcCCCcc--cCHHHHHHHHH
Confidence 456788899999999999877643 23444444443
No 68
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=20.05 E-value=1.2e+02 Score=32.18 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=27.5
Q ss_pred HHHHHhcccCCCEEEEEcCCCChhcCHHHHHHHHHhCC
Q 010061 5 VTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 42 (519)
Q Consensus 5 L~ra~~lLk~GG~lVYSTCSlnp~ENEaVV~~~L~~~~ 42 (519)
|.-...+|.|||.|||+.=..+|. -..|+++|..|.
T Consensus 232 l~gl~~al~pgG~lIyTgQPwHPQ--le~IAr~LtsHr 267 (311)
T PF12147_consen 232 LAGLARALEPGGYLIYTGQPWHPQ--LEMIARVLTSHR 267 (311)
T ss_pred HHHHHHHhCCCcEEEEcCCCCCcc--hHHHHHHHhccc
Confidence 444557799999999988889983 245788898763
Done!