RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010061
(519 letters)
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 72.8 bits (179), Expect = 8e-14
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKW 66
+ L+ GG +VYSTC++N ENEAV + +VE + + + P +
Sbjct: 231 SAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGF 290
Query: 67 KVRDKGIWLASHKH------VRKFRRIGIVPS 92
+ ++ + V + R+ +P+
Sbjct: 291 -LH---VF--PQIYDCEGFFVARLRKTQAIPA 316
Score = 45.1 bits (107), Expect = 4e-05
Identities = 13/73 (17%), Positives = 20/73 (27%)
Query: 133 DDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDP 192
D L E + + P + FF+A L+K +P + D
Sbjct: 276 DLFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKDR 335
Query: 193 PKKLQNQDTEEVN 205
Q V
Sbjct: 336 EAGQIRQAATGVG 348
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 68.5 bits (168), Expect = 6e-13
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 10 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVR 69
R+VYSTCS+ ENE VV + L++ G+ L P GL +
Sbjct: 222 LTFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPAWP----HRGLSTFPGA 277
Query: 70 DKGIWLASHKH------VRKFRRI 87
+ + + V R+
Sbjct: 278 EHCLRASPETTLSSGFFVAVIERV 301
Score = 40.4 bits (95), Expect = 0.001
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 116 VNSDEGLQQVEDVLTSADDLEEEVSDLP------------LERCMRLVPHDQNSGAFFIA 163
+ +E V D L LP E C+R P S FF+A
Sbjct: 237 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA 296
Query: 164 VLQKVS 169
V+++V
Sbjct: 297 VIERVE 302
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 68.4 bits (168), Expect = 7e-13
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKW 66
G+ +LK GG +VYSTCS+ P ENE V+ L + VEL+ + P L + G+
Sbjct: 231 KGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD--VELLPLKYGEPALTNPFGIELS 288
Query: 67 KVRDKGIWLASHKH------VRKFRRI 87
+ L H + K R++
Sbjct: 289 EEIKNARRLYPDVHETSGFFIAKIRKL 315
Score = 39.5 bits (93), Expect = 0.002
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 144 LERCMRLVPHDQNSGAFFIAVLQKV 168
++ RL P + FFIA ++K+
Sbjct: 291 IKNARRLYPDVHETSGFFIAKIRKL 315
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 68.1 bits (167), Expect = 2e-12
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKW 66
LL GG +VYSTC+ P ENE VVA L+ L D PG+ +W
Sbjct: 214 QASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPE-FRLEDARLHPLF---APGVPEW 269
Query: 67 KVRDKGIWLAS----HKH------VRKFRRIGIVPSM 93
+ + + H+ + +FR+ G S
Sbjct: 270 GEGNPELLKTARLWPHRLEGEGHFLARFRKEGGAWST 306
Score = 38.9 bits (91), Expect = 0.003
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 144 LERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEK 177
L + RL PH F+A +K
Sbjct: 276 LLKTARLWPHRLEGEGHFLARFRKEGGAWSTPRL 309
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 66.6 bits (163), Expect = 7e-12
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKW 66
+ I +LK G+++YSTC+ P ENE +++ ++ ++E + ++ V G +W
Sbjct: 219 SAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIPLTQSVS-----SGRSEW 273
Query: 67 KVRDKGIWLASHKHVRKFRRI 87
S + K RI
Sbjct: 274 ---------GSVAGLEKTIRI 285
Score = 37.3 bits (87), Expect = 0.011
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 144 LERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEE 203
LE+ +R+ PH F+A L + +EK + K + +KL + + +
Sbjct: 279 LEKTIRIWPHKDQGEGHFVAKLTFHGQNQMHKEKKTRKKSK--VQMTKEQEKLWTEFSND 336
Query: 204 VN 205
+
Sbjct: 337 FH 338
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 61.1 bits (149), Expect = 2e-10
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 7 AGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS-NEVPQLIHRPGLRK 65
GI LLK G +VYSTCSM ENE V+ IL+K VEL+ + NE + + G K
Sbjct: 196 IGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKR-NDVELIIIKANEFKGINIKEGYIK 254
Query: 66 WKVR 69
+R
Sbjct: 255 GTLR 258
Score = 30.6 bits (70), Expect = 1.1
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 116 VNSDEGLQQVEDVLTSADDLEEEVSDLP-----------LERCMRLVPHDQNSGAFFIAV 164
+ +E + ++ +L +D+E + ++ +R+ P + FFIA
Sbjct: 214 MEVEENEEVIKYILQKRNDVELIIIKANEFKGINIKEGYIKGTLRVFPP---NEPFFIAK 270
Query: 165 LQKV 168
L+K+
Sbjct: 271 LRKI 274
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 58.4 bits (142), Expect = 2e-09
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 10 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKW 66
L+K GGR++Y+TCS+ ENE + L +LV + + +R W
Sbjct: 377 RLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPE-FKLVPLKSPYDPGFLEGTMRAW 432
Score = 38.4 bits (90), Expect = 0.004
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 116 VNSDEGLQQVEDVLT-----SADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQKV 168
+ +E + + L L+ LE MR PH ++ FF A+L+K
Sbjct: 392 IFKEENEKNIRWFLNVHPEFKLVPLKSPYDPGFLEGTMRAWPHRHSTIGFFYALLEKS 449
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 56.0 bits (136), Expect = 1e-08
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 10 SLLKVGGRIVYSTCSMNPVENEAVVAEILRK 40
LK GG +VY+TCS+ P EN + L++
Sbjct: 362 PHLKTGGTLVYATCSVLPEENSLQIKAFLQR 392
Score = 42.2 bits (100), Expect = 3e-04
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 116 VNSDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQK 167
V +E Q++ L D E + P + + +P + FF A L K
Sbjct: 377 VLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK 428
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 1e-05
Identities = 66/437 (15%), Positives = 126/437 (28%), Gaps = 154/437 (35%)
Query: 46 ELVDVSNEVPQLIH--RPGLR---KWK--------VRDKGIWLASHKHVRKF-------- 84
D S+ + IH + LR K K + + + + K F
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQ--NAKAWNAFNLSCKILL 270
Query: 85 --RRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGL--QQVEDVLTSADDLEEEVS 140
R + + + ++H ++ + L +V+ +L L+
Sbjct: 271 TTRFKQVTDFLSAATTTH------------ISLDHHSMTLTPDEVKSLLLKY--LDCRPQ 316
Query: 141 DLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPV------VQE--------KHINPEEKML 186
DLP E +P + +++ KH+N +K+
Sbjct: 317 DLPREVL-------------------TTNPRRLSIIAESIRDGLATWDNWKHVN-CDKLT 356
Query: 187 PRNDDPPKKLQNQDTEEVNGMEVDLA---DGTDEKDPEGSLEANSIDNEDGAAVEPDPLT 243
+ L + E M L+ P L L
Sbjct: 357 TIIE---SSLNVLEPAEYRKMFDRLSVFPP--SAHIPTILLS----------------LI 395
Query: 244 CEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFNDETIINSIKTFYGIDD 303
V + V VN K K L ++ + K + I + +K +++
Sbjct: 396 WFDVIKSDVMVVVN---KLH----KYSL-VEKQPK--ESTISIPSIYLELKVK----LEN 441
Query: 304 SFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALD---LNFRVGQQLKITSVGLKM------ 354
+ L +V D + + + + LD + +G LK +M
Sbjct: 442 EYALHRSIV----DHYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNIEHPERMTLFRMV 496
Query: 355 -----FERQTSREGNSAPCSFRISSEGLPVIL------PYITKQI-----LYASLVDFKH 398
F Q R ++A + S L + PYI L +++DF
Sbjct: 497 FLDFRFLEQKIRHDSTAWNA---SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF-- 551
Query: 399 LLQYKTI----KFADFV 411
L + + K+ D +
Sbjct: 552 LPKIEENLICSKYTDLL 568
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 7e-04
Identities = 57/313 (18%), Positives = 87/313 (27%), Gaps = 141/313 (45%)
Query: 220 PEGSLEAN----SIDNEDGAAVEPDP-LTCEKVDSEETEVPVNTETKSERTGGKRKLQIQ 274
P SL + S++N +G P P L+ + Q+Q
Sbjct: 315 PNTSLPPSILEDSLENNEGV---PSPMLSIS---------------------NLTQEQVQ 350
Query: 275 GKWKGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKD- 333
++ N + Q+ LV NG N V VS +
Sbjct: 351 ---DYVNK---TNSH-----------LPAGKQVEISLV--NGAKNLV-----VSGPPQSL 386
Query: 334 -ALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFR---ISSEGLPVILPYITKQIL 389
L+L R + K S GL Q SR P S R S+ LPV P+
Sbjct: 387 YGLNLTLR---KAKAPS-GLD----Q-SR----IPFSERKLKFSNRFLPVASPF------ 427
Query: 390 YASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTI 449
H S L++ ++ + + N + +A I
Sbjct: 428 --------H---------------------SHLLVPASDLINK---DLVKNNVSFNAKDI 455
Query: 450 AI-----GCWKGRASLSVMVTAIDCQELLERLLMRLEI--EK------------------ 484
I LS ++ E + ++RL + E
Sbjct: 456 QIPVYDTFDGSDLRVLSGSIS-----ERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 485 --GDLVQENALGT 495
G L N GT
Sbjct: 511 GLGVLTHRNKDGT 523
Score = 40.0 bits (93), Expect = 0.002
Identities = 53/285 (18%), Positives = 87/285 (30%), Gaps = 106/285 (37%)
Query: 277 WKGIDPVIFFNDETIINSIKTFYGIDDSFQLSGQLVSRN---------GDTNRVKRIYYV 327
W D F D YG F + +V N G+ + R Y
Sbjct: 1646 WNRADN--HFKDT---------YG----FSIL-DIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 328 SKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITK- 386
+ + +D + K+F+ +S +FR S +GL L T+
Sbjct: 1690 AMIFETIVDGKLKT----------EKIFKEINE---HSTSYTFR-SEKGL---L-SATQF 1731
Query: 387 -Q--ILYASLVDFKHLLQYKTIKFADFVDA-----EFGEKASKLMMGCC----------V 428
Q + F+ L+ K + AD A E+ + L V
Sbjct: 1732 TQPALTLMEKAAFE-DLKSKGLIPADATFAGHSLGEY----AAL---ASLADVMSIESLV 1783
Query: 429 IVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVM------VTAIDCQELLERLLMRLEI 482
V+ G + + D GR++ ++ V A QE L+ ++ R+
Sbjct: 1784 EVVFYRGMTMQVAVPRDEL--------GRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 483 EKGDLVQENALGTDEVQEEMNDN---------GKEEPESLEVAVN 518
G LV E N N G + +L+ N
Sbjct: 1836 RTGWLV-EIV----------NYNVENQQYVAAG--DLRALDTVTN 1867
Score = 29.6 bits (66), Expect = 3.1
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Query: 15 GGRIVYSTCSMNP------VENEA---VVAEILRKCEGSVELV 48
GR Y ++NP EA VV + ++ VE+V
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 33.1 bits (76), Expect = 0.12
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 10 SLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 51
LK GGRI+ + +E + E LR V + +++
Sbjct: 122 DKLKPGGRIIVTAIL---LETKFEAMECLRDLGFDVNITELN 160
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 33.0 bits (76), Expect = 0.14
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 12 LKVGGRIVYSTCSMNPV--ENEAVVAEILRKCEGSVELVDVS 51
K IV N + EN A + +V+ V+V
Sbjct: 121 KKKINHIV-----ANTIVLENAAKIINEFESRGYNVDAVNVF 157
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.68
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 6/25 (24%)
Query: 343 QQLKITSVGLKMFERQTSREGNSAP 367
Q LK LK++ +SAP
Sbjct: 20 QALKKLQASLKLY------ADDSAP 38
Score = 27.2 bits (59), Expect = 7.7
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 29 ENEAVVAEILRKCEGSVELVDVSNEVPQL 57
E +A L+K + S++L + P L
Sbjct: 18 EKQA-----LKKLQASLKLY-ADDSAPAL 40
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 1.0
Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 58/186 (31%)
Query: 42 EGSVE------LVDVSNEVPQLIHRPGLRKW-------KVRDKGIWLASHKHVRKFRRIG 88
EG VE + N + G W V DK + + + G
Sbjct: 849 EGCVEMAWIMGFISYHNGNLKGRPYTG---WVDSKTKEPVDDKDVKAKYETSILE--HSG 903
Query: 89 IVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLPLERCM 148
I IEP+ N + E +Q+V +DLE +
Sbjct: 904 IRL--------------IEPELFNGYNPEKKEMIQEVI----VEEDLEPFEASKETAEQF 945
Query: 149 RL-------VPHDQNSGAFFIAVLQ-------KVSPLPVV---Q-EKHINPEEKMLPRND 190
+ + +G + + +L+ K + Q N + + +
Sbjct: 946 KHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDI 1005
Query: 191 ----DP 192
DP
Sbjct: 1006 ISQVDP 1011
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 28.3 bits (63), Expect = 5.3
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 12 LKVGGRIVYSTCSMNPV--ENEAVVAEILRKCEGSVELVDVS 51
LK G IV +N V + E L VE+ V+
Sbjct: 132 LKSEGVIV-----LNAVTLDTLTKAVEFLEDHGYMVEVACVN 168
>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO,
tungstoenzyme, tungsten containing protein, hypertherm
oxidoreductase; HET: PTT; 1.85A {Pyrococcus furiosus}
SCOP: a.110.1.1 d.152.1.1 PDB: 1b4n_A*
Length = 619
Score = 28.9 bits (64), Expect = 5.3
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 31 EAVVAEILRKCEGSVELVDVSNE-VPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGI 89
+ L EL +++ E V + + G + + KG+ ++ + + + + +
Sbjct: 368 KGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGY-NCYIYPAMAL 426
Query: 90 VPSMFPSGSSHMDATDIEP 108
G+ H +A I
Sbjct: 427 AYGTSAIGAHHKEAWVIAW 445
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 28.2 bits (63), Expect = 6.1
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 12 LKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS------NEVPQLIHRPGLRK 65
LK GG+ N +++ AE++RK E + ++ G+
Sbjct: 138 LKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS 197
Query: 66 WKV--RDKGIWLASHK 79
+++ D+G W+ K
Sbjct: 198 YEIILGDEGFWIIISK 213
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 27.5 bits (61), Expect = 8.5
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 5 VTAGISLLKVGGRI---VYSTCSMNPVENEAVVA 35
+ + L+VGGR+ +Y +E +AV+
Sbjct: 118 IEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLE 151
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding,
nucleotide-binding, DN protein; 1.70A {Thermus
thermophilus}
Length = 83
Score = 26.0 bits (58), Expect = 8.8
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 58 IHRPG---LRKWKVRDKGIWLASHKHVRKFR 85
+H G LR+ +R+ L K V F
Sbjct: 39 LHGKGTGALRQ-AIRE---ALRRDKRVESFA 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.380
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,774,465
Number of extensions: 478137
Number of successful extensions: 614
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 33
Length of query: 519
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 421
Effective length of database: 3,965,535
Effective search space: 1669490235
Effective search space used: 1669490235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.8 bits)