RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010061
(519 letters)
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 60.0 bits (144), Expect = 1e-10
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 1 MVVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHR 60
+ + G+ +LK GG +VYSTCS+ P ENE V+ L + VEL+ + P L +
Sbjct: 223 QMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD--VELLPLKYGEPALTNP 280
Query: 61 PGLRKWKVRDKGIWLASHKH------VRKFRRI 87
G+ + L H + K R++
Sbjct: 281 FGIELSEEIKNARRLYPDVHETSGFFIAKIRKL 313
Score = 43.9 bits (102), Expect = 2e-05
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 113 VTDVNSDEGLQQVEDVLTSAD----DLEEEVSDLP----------LERCMRLVPHDQNSG 158
+ +E ++ L + D L+ L ++ RL P +
Sbjct: 244 TCSLEPEENEFVIQWALDNFDVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETS 303
Query: 159 AFFIAVLQKV 168
FFIA ++K+
Sbjct: 304 GFFIAKIRKL 313
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 50.9 bits (120), Expect = 1e-07
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 13 KVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKG 72
R+VYSTCS+ ENE VV + L++ G+ L P GL + +
Sbjct: 217 PSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPAWPH----RGLSTFPGAEHC 272
Query: 73 IWLASHKH------VRKFRRI 87
+ + V R+
Sbjct: 273 LRASPETTLSSGFFVAVIERV 293
Score = 48.9 bits (115), Expect = 5e-07
Identities = 26/134 (19%), Positives = 41/134 (30%), Gaps = 23/134 (17%)
Query: 47 LVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDI 106
L+D S + R + L + + +R FPS + +T
Sbjct: 171 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQ--QRALCHALTFPSLQRLVYST-- 226
Query: 107 EPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEVSDLP------------LERCMRLVPHD 154
+ +E V D L LP E C+R P
Sbjct: 227 -------CSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPET 279
Query: 155 QNSGAFFIAVLQKV 168
S FF+AV+++V
Sbjct: 280 TLSSGFFVAVIERV 293
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 48.2 bits (113), Expect = 1e-06
Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 4/100 (4%)
Query: 72 GIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNS----DEGLQQVED 127
G+ R I G + +E Q++
Sbjct: 185 GVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKA 244
Query: 128 VLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQK 167
L D E + P + + +P + FF A L K
Sbjct: 245 FLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK 284
Score = 46.2 bits (108), Expect = 4e-06
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 1 MVVFVTAGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHR 60
+ A LK GG +VY+TCS+ P EN + L++ EL + +
Sbjct: 209 QSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTAD-AELCETG-----TPEQ 262
Query: 61 PGLRKWKVRDKG 72
PG + ++G
Sbjct: 263 PGKQNLPGAEEG 274
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 36.0 bits (82), Expect = 0.008
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 11 LLKVGGRIVYSTCS--MNPVENEAVVAEILRKCEGSVELVDV 50
LLK GG + ++CS M A+VAE + + +V+
Sbjct: 250 LLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEK 291
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 32.2 bits (72), Expect = 0.12
Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 8 GISLLKVGGRIVYSTCS--MNPVENEAVVAEILRKCEGSVELVD 49
G++L+K GG +V +CS ++ + ++ K +++++
Sbjct: 249 GLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLE 292
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 27.1 bits (59), Expect = 6.0
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 4 FVTAGISLLKVGGRIVYSTCS--MNPVENEAVVAEILRKCEGSVELV 48
+ G+ +L G I+ ST + M + + + + K + + +
Sbjct: 245 LIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291
>d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId:
9606]}
Length = 73
Score = 25.0 bits (55), Expect = 6.3
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 17/62 (27%)
Query: 369 SFRISSEGLPVILPYITKQILYASL----VDF--KHLLQYKTIK-------FADFVDAEF 415
SFRI + P YI + L L + K + Y +A F A +
Sbjct: 13 SFRILASDKP----YILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYAAFSSALY 68
Query: 416 GE 417
GE
Sbjct: 69 GE 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.380
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,863,487
Number of extensions: 86990
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 11
Length of query: 519
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 430
Effective length of database: 1,185,626
Effective search space: 509819180
Effective search space used: 509819180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.2 bits)