Query 010062
Match_columns 519
No_of_seqs 426 out of 2404
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 20:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03472 HpnI hopanoid biosyn 100.0 1.3E-44 2.8E-49 376.1 37.1 327 83-469 40-372 (373)
2 TIGR03469 HonB hopene-associat 100.0 1E-34 2.3E-39 302.8 35.7 235 80-320 36-281 (384)
3 PRK05454 glucosyltransferase M 100.0 4.1E-32 8.9E-37 297.4 34.2 240 82-326 122-385 (691)
4 KOG2547 Ceramide glucosyltrans 100.0 2.8E-34 6.1E-39 280.0 12.3 417 1-469 1-427 (431)
5 PRK14583 hmsR N-glycosyltransf 100.0 1.1E-30 2.4E-35 277.7 39.0 221 82-321 73-297 (444)
6 PRK11204 N-glycosyltransferase 100.0 4E-30 8.6E-35 271.8 39.7 229 81-325 51-287 (420)
7 cd02520 Glucosylceramide_synth 100.0 2E-32 4.3E-37 259.2 19.6 194 84-322 1-194 (196)
8 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 1.3E-28 2.7E-33 261.2 39.6 230 81-325 46-294 (439)
9 cd06437 CESA_CaSu_A2 Cellulose 100.0 4E-29 8.8E-34 242.6 21.2 222 84-321 1-229 (232)
10 PF13641 Glyco_tranf_2_3: Glyc 100.0 3.7E-30 8.1E-35 248.7 12.8 221 84-320 1-225 (228)
11 PRK11498 bcsA cellulose syntha 100.0 2.4E-27 5.2E-32 263.2 34.7 225 80-325 256-496 (852)
12 TIGR03030 CelA cellulose synth 100.0 1.2E-27 2.5E-32 267.0 30.1 227 80-323 127-383 (713)
13 cd04191 Glucan_BSP_ModH Glucan 100.0 3.2E-28 6.8E-33 239.1 21.8 228 86-322 1-249 (254)
14 PRK14716 bacteriophage N4 adso 100.0 1.4E-25 3E-30 238.3 38.9 228 81-324 63-323 (504)
15 COG2943 MdoH Membrane glycosyl 100.0 8.1E-27 1.8E-31 236.1 27.3 305 29-358 104-435 (736)
16 cd06427 CESA_like_2 CESA_like_ 100.0 1.7E-27 3.7E-32 232.8 20.8 223 84-324 1-230 (241)
17 cd06421 CESA_CelA_like CESA_Ce 100.0 3E-27 6.5E-32 228.8 20.3 217 84-320 1-226 (234)
18 cd06435 CESA_NdvC_like NdvC_li 100.0 8.4E-27 1.8E-31 226.6 21.2 216 87-319 1-223 (236)
19 COG1215 Glycosyltransferases, 99.9 1.2E-26 2.7E-31 246.2 23.8 224 83-324 53-284 (439)
20 PRK11234 nfrB bacteriophage N4 99.9 1E-23 2.2E-28 232.7 39.1 202 79-293 58-279 (727)
21 cd04192 GT_2_like_e Subfamily 99.9 1.4E-25 3E-30 216.0 19.4 217 88-319 1-225 (229)
22 cd06439 CESA_like_1 CESA_like_ 99.9 2.1E-24 4.6E-29 211.6 22.9 220 79-322 24-246 (251)
23 cd06434 GT2_HAS Hyaluronan syn 99.9 2.8E-24 6.2E-29 208.4 18.7 216 85-321 1-229 (235)
24 cd02525 Succinoglycan_BP_ExoA 99.9 1.4E-23 3E-28 204.8 23.2 217 85-320 1-223 (249)
25 PF13506 Glyco_transf_21: Glyc 99.9 1.9E-24 4.1E-29 200.6 13.2 165 144-321 4-174 (175)
26 cd02510 pp-GalNAc-T pp-GalNAc- 99.9 8.6E-24 1.9E-28 213.4 18.1 205 87-302 1-227 (299)
27 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 1.4E-23 3E-28 198.6 17.4 197 84-298 1-199 (202)
28 cd04190 Chitin_synth_C C-termi 99.9 6.9E-24 1.5E-28 207.9 14.1 202 88-321 1-238 (244)
29 cd04195 GT2_AmsE_like GT2_AmsE 99.9 1.7E-23 3.7E-28 198.0 16.2 194 87-298 1-199 (201)
30 PLN02726 dolichyl-phosphate be 99.9 1.8E-22 3.8E-27 197.7 23.3 203 82-300 7-218 (243)
31 PRK15489 nfrB bacteriophage N4 99.9 2E-20 4.2E-25 204.2 38.1 205 79-291 66-285 (703)
32 cd06913 beta3GnTL1_like Beta 1 99.9 4.2E-22 9.2E-27 191.5 19.9 205 88-301 1-210 (219)
33 cd06442 DPM1_like DPM1_like re 99.9 7.2E-22 1.6E-26 189.9 20.4 210 88-312 1-216 (224)
34 cd04196 GT_2_like_d Subfamily 99.9 1.7E-22 3.8E-27 192.4 15.9 195 87-293 1-197 (214)
35 cd06438 EpsO_like EpsO protein 99.9 8.1E-22 1.8E-26 184.3 13.4 174 88-278 1-183 (183)
36 cd04185 GT_2_like_b Subfamily 99.9 3.1E-21 6.6E-26 182.9 17.5 174 88-302 1-175 (202)
37 cd06433 GT_2_WfgS_like WfgS an 99.9 2.8E-21 6E-26 181.6 16.6 194 87-301 1-195 (202)
38 cd02522 GT_2_like_a GT_2_like_ 99.9 1.2E-20 2.6E-25 181.1 20.9 184 86-298 1-184 (221)
39 cd06436 GlcNAc-1-P_transferase 99.9 2.5E-21 5.4E-26 182.6 14.1 177 88-275 1-191 (191)
40 cd06420 GT2_Chondriotin_Pol_N 99.9 1.1E-20 2.4E-25 175.6 18.1 179 88-299 1-180 (182)
41 PTZ00260 dolichyl-phosphate be 99.9 2.8E-19 6.1E-24 182.8 28.6 203 80-296 66-288 (333)
42 cd04186 GT_2_like_c Subfamily 99.9 1.7E-20 3.7E-25 170.7 17.3 164 88-299 1-164 (166)
43 PRK10018 putative glycosyl tra 99.9 5.8E-20 1.3E-24 183.0 21.6 196 83-293 4-200 (279)
44 PRK10073 putative glycosyl tra 99.9 1.6E-20 3.5E-25 191.7 17.5 204 83-301 5-217 (328)
45 cd06423 CESA_like CESA_like is 99.8 2.7E-20 5.9E-25 169.6 14.1 175 88-275 1-180 (180)
46 COG1216 Predicted glycosyltran 99.8 1.6E-19 3.5E-24 182.8 20.3 209 83-303 2-223 (305)
47 cd04188 DPG_synthase DPG_synth 99.8 2.7E-19 5.8E-24 171.0 17.3 191 88-295 1-203 (211)
48 cd02526 GT2_RfbF_like RfbF is 99.8 1.4E-19 3E-24 175.7 15.4 198 88-302 1-206 (237)
49 PF10111 Glyco_tranf_2_2: Glyc 99.8 9.1E-19 2E-23 175.2 19.4 224 87-318 1-243 (281)
50 PF00535 Glycos_transf_2: Glyc 99.8 1.2E-19 2.6E-24 164.7 10.3 164 87-262 1-169 (169)
51 PRK10063 putative glycosyl tra 99.8 8.3E-18 1.8E-22 165.1 22.1 193 84-301 1-197 (248)
52 cd04179 DPM_DPG-synthase_like 99.8 1.2E-18 2.6E-23 162.3 13.4 173 88-279 1-182 (185)
53 PRK10714 undecaprenyl phosphat 99.8 2.8E-16 6E-21 160.3 30.5 119 83-211 5-126 (325)
54 PRK13915 putative glucosyl-3-p 99.8 1.2E-17 2.5E-22 168.7 19.2 195 82-293 29-238 (306)
55 cd04187 DPM1_like_bac Bacteria 99.8 5.9E-18 1.3E-22 157.6 15.1 173 88-278 1-177 (181)
56 TIGR01556 rhamnosyltran L-rham 99.8 3E-17 6.5E-22 164.1 21.1 196 92-302 2-203 (281)
57 KOG2978 Dolichol-phosphate man 99.7 2.5E-15 5.5E-20 134.6 17.1 200 84-300 3-213 (238)
58 cd00761 Glyco_tranf_GTA_type G 99.6 6.8E-15 1.5E-19 130.5 16.3 155 88-290 1-155 (156)
59 cd02511 Beta4Glucosyltransfera 99.5 8.5E-14 1.8E-18 135.0 14.1 101 85-203 1-101 (229)
60 COG0463 WcaA Glycosyltransfera 99.5 9.2E-14 2E-18 129.0 13.4 106 83-198 2-107 (291)
61 PF13632 Glyco_trans_2_3: Glyc 99.5 6.6E-13 1.4E-17 124.9 17.1 138 176-323 1-142 (193)
62 PF03142 Chitin_synth_2: Chiti 99.4 1.4E-10 3E-15 123.2 26.6 231 83-315 24-368 (527)
63 PLN02893 Cellulose synthase-li 99.4 3.1E-10 6.8E-15 123.7 27.9 98 156-256 279-386 (734)
64 KOG2977 Glycosyltransferase [G 99.1 2.3E-09 4.9E-14 102.9 15.8 196 85-294 68-283 (323)
65 cd02514 GT13_GLCNAC-TI GT13_GL 99.1 2.9E-09 6.3E-14 107.7 15.3 197 86-311 2-220 (334)
66 KOG3737 Predicted polypeptide 99.0 2.6E-10 5.7E-15 113.0 6.2 202 81-292 152-380 (603)
67 KOG3736 Polypeptide N-acetylga 99.0 2.6E-10 5.7E-15 121.4 6.5 203 81-295 139-365 (578)
68 KOG3738 Predicted polypeptide 99.0 5.5E-10 1.2E-14 111.1 6.4 190 82-287 122-335 (559)
69 PLN02189 cellulose synthase 98.9 7.1E-07 1.5E-11 100.1 27.3 98 156-256 513-620 (1040)
70 PF13712 Glyco_tranf_2_5: Glyc 98.9 2.3E-08 5.1E-13 96.0 12.3 176 86-301 1-199 (217)
71 PLN02195 cellulose synthase A 98.8 1.4E-06 3E-11 97.3 27.0 98 156-256 434-541 (977)
72 KOG2571 Chitin synthase/hyalur 98.8 9.7E-07 2.1E-11 97.6 23.4 160 157-323 424-596 (862)
73 PLN02638 cellulose synthase A 98.8 4.7E-06 1E-10 94.0 27.7 96 156-256 531-638 (1079)
74 PLN02248 cellulose synthase-li 98.4 5.9E-05 1.3E-09 85.4 24.8 98 157-256 601-706 (1135)
75 PLN02190 cellulose synthase-li 98.4 5E-05 1.1E-09 83.3 23.1 54 156-209 267-327 (756)
76 PLN02400 cellulose synthase 98.4 0.00016 3.5E-09 82.0 26.1 53 156-209 538-597 (1085)
77 PLN02436 cellulose synthase A 98.3 0.00027 5.8E-09 80.0 27.1 53 156-209 547-606 (1094)
78 PF13704 Glyco_tranf_2_4: Glyc 98.0 3.3E-05 7.2E-10 64.1 8.9 85 93-188 1-86 (97)
79 PLN02915 cellulose synthase A 97.9 0.0087 1.9E-07 68.2 28.5 53 156-209 469-528 (1044)
80 cd00899 b4GalT Beta-4-Galactos 97.9 0.00015 3.3E-09 69.0 12.2 152 85-295 3-160 (219)
81 PF03452 Anp1: Anp1; InterPro 97.5 0.0016 3.5E-08 63.8 13.4 117 80-196 21-166 (269)
82 COG4092 Predicted glycosyltran 97.4 0.0048 1E-07 59.4 13.7 185 84-280 2-211 (346)
83 PF05679 CHGN: Chondroitin N-a 97.2 0.019 4E-07 62.2 17.9 211 83-307 246-477 (499)
84 PF03071 GNT-I: GNT-I family; 97.1 0.0021 4.5E-08 67.2 8.6 204 83-311 92-315 (434)
85 PF11316 Rhamno_transf: Putati 96.9 0.011 2.4E-07 57.3 11.3 91 101-199 46-140 (234)
86 KOG3588 Chondroitin synthase 1 96.7 0.043 9.3E-07 55.3 14.0 207 81-306 226-446 (494)
87 PF06306 CgtA: Beta-1,4-N-acet 96.7 0.0073 1.6E-07 59.8 8.4 102 85-193 88-195 (347)
88 PF09488 Osmo_MPGsynth: Mannos 96.3 0.022 4.8E-07 57.4 9.4 107 85-198 51-183 (381)
89 TIGR02460 osmo_MPGsynth mannos 96.1 0.015 3.3E-07 58.2 7.1 108 85-199 51-184 (381)
90 PRK14503 mannosyl-3-phosphogly 96.1 0.016 3.4E-07 58.4 6.9 108 85-199 52-185 (393)
91 PF02709 Glyco_transf_7C: N-te 95.4 0.011 2.3E-07 47.1 2.3 48 243-293 18-66 (78)
92 PF01762 Galactosyl_T: Galacto 94.7 0.28 6E-06 46.1 10.3 181 97-289 4-191 (195)
93 KOG3916 UDP-Gal:glucosylcerami 94.7 0.16 3.4E-06 50.9 8.6 152 85-295 152-309 (372)
94 PRK14502 bifunctional mannosyl 94.5 0.099 2.1E-06 57.8 7.5 108 85-199 56-189 (694)
95 PF09258 Glyco_transf_64: Glyc 94.2 0.15 3.2E-06 50.0 7.4 109 86-209 1-110 (247)
96 PF03552 Cellulose_synt: Cellu 93.6 0.13 2.8E-06 57.0 6.2 65 144-209 167-240 (720)
97 PF12804 NTP_transf_3: MobA-li 92.8 2.3 4.9E-05 38.1 12.4 96 90-202 19-115 (160)
98 COG1213 Predicted sugar nucleo 92.4 0.39 8.5E-06 46.0 6.9 100 95-208 30-129 (239)
99 PF11735 CAP59_mtransfer: Cryp 91.8 3.1 6.6E-05 40.6 12.4 123 88-212 4-149 (241)
100 PF04666 Glyco_transf_54: N-Ac 91.4 1.6 3.5E-05 43.8 10.3 115 84-200 52-196 (297)
101 cd02540 GT2_GlmU_N_bac N-termi 91.3 2.4 5.3E-05 40.4 11.4 97 89-200 20-117 (229)
102 cd04182 GT_2_like_f GT_2_like_ 91.1 2.2 4.7E-05 39.0 10.4 94 94-200 24-118 (186)
103 TIGR03202 pucB xanthine dehydr 91.0 5.2 0.00011 37.1 12.9 101 94-203 24-126 (190)
104 TIGR03310 matur_ygfJ molybdenu 90.3 2.5 5.4E-05 38.9 10.1 99 90-203 20-120 (188)
105 PRK13368 3-deoxy-manno-octulos 89.0 8.4 0.00018 37.0 13.0 97 94-206 25-122 (238)
106 PLN02917 CMP-KDO synthetase 88.8 9.3 0.0002 38.4 13.4 99 96-208 72-171 (293)
107 PF11397 GlcNAc: Glycosyltrans 88.4 20 0.00042 37.0 15.6 213 86-302 2-264 (343)
108 TIGR03552 F420_cofC 2-phospho- 88.3 9.3 0.0002 35.5 12.4 53 144-200 65-118 (195)
109 PF13733 Glyco_transf_7N: N-te 88.1 2 4.3E-05 37.7 7.0 75 84-189 47-127 (136)
110 KOG1476 Beta-1,3-glucuronyltra 87.1 9.8 0.00021 38.1 11.9 125 83-215 86-224 (330)
111 cd04183 GT2_BcE_like GT2_BcbE_ 86.8 7.7 0.00017 37.1 11.2 110 89-208 23-132 (231)
112 PRK00317 mobA molybdopterin-gu 86.6 7.1 0.00015 36.3 10.5 88 94-200 28-116 (193)
113 KOG1413 N-acetylglucosaminyltr 86.5 7.2 0.00016 39.7 10.6 178 82-279 65-260 (411)
114 KOG4179 Lysyl hydrolase/glycos 86.5 1.5 3.2E-05 45.2 5.9 110 84-197 3-134 (568)
115 cd02516 CDP-ME_synthetase CDP- 86.4 11 0.00024 35.6 11.9 101 89-201 22-124 (218)
116 cd06422 NTP_transferase_like_1 86.1 7.2 0.00016 37.0 10.5 98 89-198 24-121 (221)
117 cd02517 CMP-KDO-Synthetase CMP 86.1 13 0.00028 35.7 12.4 102 89-205 20-122 (239)
118 cd06425 M1P_guanylylT_B_like_N 85.9 7.9 0.00017 37.1 10.8 101 89-200 25-126 (233)
119 cd02503 MobA MobA catalyzes th 85.8 8.2 0.00018 35.3 10.4 85 94-198 24-109 (181)
120 PF05045 RgpF: Rhamnan synthes 85.0 24 0.00052 38.3 14.8 120 82-209 263-404 (498)
121 TIGR00466 kdsB 3-deoxy-D-manno 84.7 17 0.00037 35.2 12.4 102 90-208 19-122 (238)
122 PF03214 RGP: Reversibly glyco 84.5 0.68 1.5E-05 46.5 2.4 101 85-200 9-118 (348)
123 cd04181 NTP_transferase NTP_tr 84.4 9.8 0.00021 35.6 10.5 98 89-200 23-121 (217)
124 PRK14360 glmU bifunctional N-a 84.3 16 0.00034 38.9 13.2 98 89-200 23-121 (450)
125 PF01697 Glyco_transf_92: Glyc 84.3 8.1 0.00018 38.2 10.3 108 86-200 3-134 (285)
126 PRK13385 2-C-methyl-D-erythrit 83.9 11 0.00024 36.2 10.7 97 94-201 28-126 (230)
127 TIGR01173 glmU UDP-N-acetylglu 83.9 8.8 0.00019 40.8 11.0 103 89-208 22-125 (451)
128 cd06428 M1P_guanylylT_A_like_N 83.9 7.9 0.00017 37.8 9.9 102 89-200 25-128 (257)
129 cd00218 GlcAT-I Beta1,3-glucur 83.6 14 0.00031 35.4 10.8 104 84-194 1-116 (223)
130 COG2068 Uncharacterized MobA-r 82.7 24 0.00051 33.3 11.7 94 95-200 30-124 (199)
131 cd06915 NTP_transferase_WcbM_l 82.7 9.7 0.00021 35.8 9.7 99 89-200 23-121 (223)
132 TIGR03584 PseF pseudaminic aci 81.4 25 0.00054 33.7 12.0 103 94-209 22-130 (222)
133 PLN02458 transferase, transfer 80.5 33 0.00071 34.8 12.5 104 84-194 112-223 (346)
134 PRK14353 glmU bifunctional N-a 80.5 17 0.00037 38.7 11.6 99 89-200 27-126 (446)
135 PRK14355 glmU bifunctional N-a 80.0 35 0.00076 36.5 13.9 98 89-200 25-123 (459)
136 PRK05450 3-deoxy-manno-octulos 80.0 20 0.00044 34.5 11.1 96 89-200 21-118 (245)
137 PF02434 Fringe: Fringe-like; 79.1 3.6 7.9E-05 40.4 5.4 109 173-293 86-203 (252)
138 cd06431 GT8_LARGE_C LARGE cata 76.8 45 0.00098 33.3 12.5 109 85-197 2-120 (280)
139 PRK14354 glmU bifunctional N-a 76.7 20 0.00044 38.2 10.8 96 89-200 24-120 (458)
140 PRK00155 ispD 2-C-methyl-D-ery 76.5 48 0.001 31.5 12.4 95 94-201 29-124 (227)
141 TIGR00453 ispD 2-C-methyl-D-er 75.8 50 0.0011 31.0 12.3 94 94-201 25-119 (217)
142 cd04189 G1P_TT_long G1P_TT_lon 75.5 58 0.0013 30.9 12.8 97 89-199 25-122 (236)
143 PF00483 NTP_transferase: Nucl 75.1 33 0.00072 32.9 11.0 102 89-200 24-128 (248)
144 PLN03180 reversibly glycosylat 75.1 2.6 5.5E-05 42.6 3.0 57 243-300 204-266 (346)
145 cd02523 PC_cytidylyltransferas 75.0 16 0.00034 34.8 8.6 93 89-196 23-115 (229)
146 cd02518 GT2_SpsF SpsF is a gly 74.9 55 0.0012 31.2 12.4 97 89-200 18-115 (233)
147 TIGR02665 molyb_mobA molybdopt 74.9 21 0.00045 32.7 9.1 90 94-200 25-115 (186)
148 cd02513 CMP-NeuAc_Synthase CMP 74.8 34 0.00074 32.2 10.8 97 94-200 24-125 (223)
149 PRK14358 glmU bifunctional N-a 74.1 34 0.00075 36.9 11.8 96 89-200 29-126 (481)
150 cd04194 GT8_A4GalT_like A4GalT 74.0 30 0.00064 33.5 10.4 98 94-195 10-116 (248)
151 PRK02726 molybdopterin-guanine 73.7 21 0.00046 33.5 8.9 89 94-200 31-120 (200)
152 cd02524 G1P_cytidylyltransfera 73.7 60 0.0013 31.5 12.5 102 89-200 23-143 (253)
153 PF01128 IspD: 2-C-methyl-D-er 71.7 78 0.0017 30.4 12.3 93 94-200 26-119 (221)
154 PRK09382 ispDF bifunctional 2- 71.5 49 0.0011 34.6 11.7 92 94-200 31-123 (378)
155 PRK14356 glmU bifunctional N-a 71.2 31 0.00068 36.7 10.6 103 89-207 27-131 (456)
156 cd00505 Glyco_transf_8 Members 70.8 40 0.00087 32.7 10.4 110 94-207 11-128 (246)
157 PRK14352 glmU bifunctional N-a 68.8 78 0.0017 34.1 13.1 99 89-200 26-126 (482)
158 TIGR01207 rmlA glucose-1-phosp 68.4 71 0.0015 31.9 11.8 100 89-200 24-124 (286)
159 KOG2287 Galactosyltransferases 68.3 1.4E+02 0.003 30.9 14.1 192 84-290 95-299 (349)
160 PRK15480 glucose-1-phosphate t 68.1 67 0.0015 32.2 11.5 100 89-200 28-128 (292)
161 PLN02728 2-C-methyl-D-erythrit 67.8 88 0.0019 30.7 12.0 102 96-211 52-154 (252)
162 PRK14357 glmU bifunctional N-a 67.4 65 0.0014 34.2 12.0 94 89-200 22-116 (448)
163 cd02509 GDP-M1P_Guanylyltransf 67.0 79 0.0017 31.3 11.8 88 89-187 26-116 (274)
164 cd02508 ADP_Glucose_PP ADP-glu 66.9 98 0.0021 28.7 11.9 105 89-200 23-136 (200)
165 PRK15171 lipopolysaccharide 1, 66.3 50 0.0011 33.8 10.4 120 84-207 24-153 (334)
166 TIGR00454 conserved hypothetic 66.0 83 0.0018 29.1 11.0 97 90-203 22-119 (183)
167 PF07507 WavE: WavE lipopolysa 63.7 34 0.00074 34.7 8.4 108 86-199 1-121 (311)
168 COG1209 RfbA dTDP-glucose pyro 62.9 1.2E+02 0.0026 30.1 11.5 182 89-290 25-211 (286)
169 PF01755 Glyco_transf_25: Glyc 61.3 1.1E+02 0.0024 28.3 11.1 115 88-207 5-119 (200)
170 TIGR02623 G1P_cyt_trans glucos 60.4 1.7E+02 0.0037 28.4 12.9 100 89-199 24-142 (254)
171 PF02348 CTP_transf_3: Cytidyl 59.7 1.2E+02 0.0026 28.3 11.2 96 94-203 22-119 (217)
172 PF11051 Mannosyl_trans3: Mann 59.5 54 0.0012 32.5 8.9 99 87-193 3-112 (271)
173 TIGR01105 galF UTP-glucose-1-p 58.9 2E+02 0.0043 28.9 13.0 103 89-200 28-156 (297)
174 cd06430 GT8_like_2 GT8_like_2 58.7 1E+02 0.0022 31.2 10.6 110 86-198 3-120 (304)
175 PF02364 Glucan_synthase: 1,3- 58.6 38 0.00082 38.7 8.2 111 86-200 192-318 (817)
176 COG1211 IspD 4-diphosphocytidy 58.6 1.3E+02 0.0028 29.1 11.0 95 94-199 30-126 (230)
177 cd06426 NTP_transferase_like_2 58.5 82 0.0018 29.5 9.8 97 89-200 23-120 (220)
178 cd02538 G1P_TT_short G1P_TT_sh 58.0 1.5E+02 0.0032 28.3 11.7 100 89-199 25-124 (240)
179 PRK14489 putative bifunctional 57.9 72 0.0016 33.1 9.9 97 94-208 30-127 (366)
180 PLN03153 hypothetical protein; 57.2 37 0.0008 36.7 7.5 108 166-294 203-314 (537)
181 PF01644 Chitin_synth_1: Chiti 56.4 1.6E+02 0.0035 26.9 11.9 35 162-198 129-163 (163)
182 PHA01631 hypothetical protein 54.7 19 0.00042 32.6 4.2 70 114-189 17-87 (176)
183 PRK09451 glmU bifunctional N-a 54.4 1.7E+02 0.0037 31.1 12.5 101 89-206 27-128 (456)
184 KOG1022 Acetylglucosaminyltran 54.4 32 0.00069 37.0 6.4 111 83-209 442-554 (691)
185 PF09949 DUF2183: Uncharacteri 54.4 39 0.00085 28.1 5.8 41 98-142 50-91 (100)
186 PF05060 MGAT2: N-acetylglucos 52.2 1.9E+02 0.0042 29.9 11.5 52 83-134 30-81 (356)
187 PF02485 Branch: Core-2/I-Bran 51.6 1.3E+02 0.0028 28.9 10.0 107 86-201 1-115 (244)
188 cd02541 UGPase_prokaryotic Pro 49.7 2.1E+02 0.0046 27.7 11.4 103 89-200 25-147 (267)
189 TIGR01479 GMP_PMI mannose-1-ph 49.7 2.4E+02 0.0052 30.4 12.6 100 89-198 26-129 (468)
190 KOG2501 Thioredoxin, nucleored 49.1 1.7E+02 0.0037 26.5 9.4 95 87-195 43-138 (157)
191 cd06432 GT8_HUGT1_C_like The C 48.2 1.6E+02 0.0035 28.7 10.1 99 94-196 11-117 (248)
192 PF01501 Glyco_transf_8: Glyco 48.0 55 0.0012 31.1 6.8 95 97-196 12-120 (250)
193 PF03360 Glyco_transf_43: Glyc 47.0 62 0.0013 30.8 6.6 35 160-194 59-98 (207)
194 KOG2264 Exostosin EXT1L [Signa 45.9 38 0.00083 36.6 5.4 92 85-191 650-742 (907)
195 cd04198 eIF-2B_gamma_N The N-t 45.5 2.6E+02 0.0057 26.2 12.0 100 89-200 25-126 (214)
196 PRK10122 GalU regulator GalF; 44.4 3.4E+02 0.0074 27.2 13.2 103 89-200 28-156 (297)
197 TIGR01099 galU UTP-glucose-1-p 43.6 2.8E+02 0.006 26.7 11.1 102 89-200 25-147 (260)
198 PF09886 DUF2113: Uncharacteri 41.7 2.8E+02 0.0061 25.9 9.9 84 94-199 80-183 (188)
199 PLN03183 acetylglucosaminyltra 40.6 4.1E+02 0.0088 28.3 12.1 103 81-190 75-192 (421)
200 cd04197 eIF-2B_epsilon_N The N 39.6 3.2E+02 0.007 25.5 11.5 99 89-200 25-129 (217)
201 PRK05293 glgC glucose-1-phosph 39.4 2.1E+02 0.0046 29.5 10.0 103 89-199 28-141 (380)
202 PRK15460 cpsB mannose-1-phosph 39.2 4.1E+02 0.0089 28.8 12.2 100 89-198 31-136 (478)
203 PF03808 Glyco_tran_WecB: Glyc 36.9 2.3E+02 0.005 25.8 8.7 102 95-209 33-134 (172)
204 COG1207 GlmU N-acetylglucosami 36.7 5E+02 0.011 27.6 11.7 118 82-216 19-139 (460)
205 TIGR01208 rmlA_long glucose-1- 36.5 4.7E+02 0.01 26.6 12.2 99 89-200 24-123 (353)
206 COG1208 GCD1 Nucleoside-diphos 36.0 4.1E+02 0.009 27.4 11.4 99 89-201 26-125 (358)
207 COG1861 SpsF Spore coat polysa 35.0 4.1E+02 0.0088 25.7 9.9 106 88-209 21-127 (241)
208 KOG0799 Branching enzyme [Carb 34.0 5E+02 0.011 27.8 11.8 108 85-198 104-218 (439)
209 COG0041 PurE Phosphoribosylcar 33.7 2.1E+02 0.0045 25.9 7.3 61 85-151 4-64 (162)
210 PRK00844 glgC glucose-1-phosph 33.5 3E+02 0.0064 28.9 10.0 105 89-200 30-142 (407)
211 PF14097 SpoVAE: Stage V sporu 32.0 4E+02 0.0086 24.5 8.9 85 117-209 2-88 (180)
212 COG0746 MobA Molybdopterin-gua 31.9 3.7E+02 0.0079 25.1 9.3 55 144-202 61-116 (192)
213 PRK00576 molybdopterin-guanine 31.6 3.9E+02 0.0084 24.1 10.5 86 96-200 15-102 (178)
214 PF13896 Glyco_transf_49: Glyc 31.6 3.8E+02 0.0082 27.2 10.1 34 164-199 120-153 (317)
215 COG1212 KdsB CMP-2-keto-3-deox 31.5 4.9E+02 0.011 25.2 11.8 46 163-209 80-127 (247)
216 TIGR02091 glgC glucose-1-phosp 30.3 2.6E+02 0.0056 28.6 8.8 105 89-200 23-136 (361)
217 PF04724 Glyco_transf_17: Glyc 30.2 3.3E+02 0.0071 28.3 9.3 24 173-196 178-201 (356)
218 cd06533 Glyco_transf_WecG_TagA 26.9 4.6E+02 0.0099 23.8 8.9 94 93-198 29-123 (171)
219 PRK00560 molybdopterin-guanine 26.5 4.5E+02 0.0097 24.3 9.0 80 94-195 32-113 (196)
220 PF03028 Dynein_heavy: Dynein 25.7 1.6E+02 0.0035 33.4 6.9 88 103-199 106-194 (707)
221 PRK00725 glgC glucose-1-phosph 25.1 8.2E+02 0.018 25.7 12.1 109 83-200 36-154 (425)
222 COG3510 CmcI Cephalosporin hyd 24.5 2.5E+02 0.0054 26.6 6.4 61 114-187 97-157 (237)
223 COG1158 Rho Transcription term 24.5 5.4E+02 0.012 26.6 9.2 98 85-199 175-277 (422)
224 PF06908 DUF1273: Protein of u 24.1 5.7E+02 0.012 23.6 9.0 107 92-203 16-131 (177)
225 TIGR02092 glgD glucose-1-phosp 23.8 3.1E+02 0.0068 28.1 8.1 103 89-199 27-138 (369)
226 PLN02241 glucose-1-phosphate a 23.1 9E+02 0.02 25.5 11.6 105 89-200 28-147 (436)
227 KOG2791 N-acetylglucosaminyltr 23.1 3.1E+02 0.0068 28.1 7.3 50 85-138 118-167 (455)
228 cd01453 vWA_transcription_fact 23.0 5.9E+02 0.013 23.3 9.0 32 160-199 148-179 (183)
229 cd06532 Glyco_transf_25 Glycos 22.1 5E+02 0.011 22.1 8.6 93 88-189 3-98 (128)
230 COG3967 DltE Short-chain dehyd 22.0 1.3E+02 0.0028 28.8 4.2 55 86-150 30-84 (245)
231 cd01132 F1_ATPase_alpha F1 ATP 21.9 5.6E+02 0.012 25.5 8.9 95 103-200 87-186 (274)
232 TIGR01285 nifN nitrogenase mol 21.7 3.9E+02 0.0084 28.4 8.4 56 92-150 72-132 (432)
233 PRK13011 formyltetrahydrofolat 21.7 8.1E+02 0.018 24.4 10.9 119 85-216 52-180 (286)
234 PRK14359 glmU bifunctional N-a 21.1 8.9E+02 0.019 25.2 11.1 92 89-196 24-116 (430)
235 cd01966 Nitrogenase_NifN_1 Nit 20.4 4.8E+02 0.01 27.6 8.7 56 92-150 62-122 (417)
236 PRK13389 UTP--glucose-1-phosph 20.2 8.8E+02 0.019 24.3 12.2 33 89-125 33-65 (302)
No 1
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=100.00 E-value=1.3e-44 Score=376.10 Aligned_cols=327 Identities=19% Similarity=0.226 Sum_probs=232.4
Q ss_pred CCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHH
Q 010062 83 LPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHN 162 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~n 162 (519)
.|+||||||+|||++.+.+||+|+++|+|| ++|||++||+|||+|.++++++.+++|+. +++++..+++.|.++|.+|
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp-~~EIivvdd~s~D~t~~iv~~~~~~~p~~-~i~~v~~~~~~G~~~K~~~ 117 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLASFCRQDYP-GFQMLFGVQDPDDPALAVVRRLRADFPDA-DIDLVIDARRHGPNRKVSN 117 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHHHHhcCCC-CeEEEEEeCCCCCcHHHHHHHHHHhCCCC-ceEEEECCCCCCCChHHHH
Confidence 688999999999999999999999999999 79999999999999999999999999975 7888888888899999999
Q ss_pred HHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHh-----hcccccccccc
Q 010062 163 QLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYE-----YHMPCSMGFAT 237 (519)
Q Consensus 163 l~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 237 (519)
++++++++ +||+++|+|||+.++||||+++++.++ ||++++|++.+...+.+++.++.... +........ .
T Consensus 118 l~~~~~~a--~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 193 (373)
T TIGR03472 118 LINMLPHA--RHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMVAR-A 193 (373)
T ss_pred HHHHHHhc--cCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHHHHHH-h
Confidence 99999988 799999999999999999999999997 59999999855444445665543211 111100111 1
Q ss_pred CCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHHHHhhhh
Q 010062 238 GGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYWNYLRKQ 317 (519)
Q Consensus 238 ~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~rq 317 (519)
.+...++.|++|++||++| +++||+++... .+.||+++++++++.|+++.+.+..+.++.. +.++++++ +|+
T Consensus 194 ~~~~~~~~G~~~a~RR~~l--~~iGGf~~~~~-~~~ED~~l~~~i~~~G~~v~~~~~~v~~~~~--~~s~~~~~---~q~ 265 (373)
T TIGR03472 194 LGRARFCFGATMALRRATL--EAIGGLAALAH-HLADDYWLGELVRALGLRVVLAPVVVDTDVH--ETSFATLL---AHE 265 (373)
T ss_pred ccCCccccChhhheeHHHH--HHcCChHHhcc-cchHHHHHHHHHHHcCCeEEecchhhhcCCC--ccCHHHHH---HHH
Confidence 1222467899999999999 88999998754 6789999999888999999988876544322 57899998 777
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccCCcccccchhhhhHHHHHHHHHHHHHHHHH
Q 010062 318 TFVLESYISKVNWIMNRALFSSHCYLSWGFAAPYFMALIHVAAVLRIYGKGYSLEETNITSGGLLLVSCLAICTFTELLS 397 (519)
Q Consensus 318 ~~~~~~y~~~~~w~~~~~~~~~~~~l~~~~~~P~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 397 (519)
.||.| +.+...+..+....+..|++++++..+.... + .+.+..+++.+ .++
T Consensus 266 ~RW~r----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~~~----~~~ 316 (373)
T TIGR03472 266 LRWSR----------TIRAVNPVGYAGSFITQPVPLAVLALLLGAA------------W---AWPLVAAALAA----RAL 316 (373)
T ss_pred HHHHh----------hhhcccchhHHHHHHHHHHHHHHHHHHHHHH------------H---HHHHHHHHHHH----HHH
Confidence 74443 3333333333333333333332222111000 1 01111111011 111
Q ss_pred HHHHHHHHHhhhhccCCCCcccchhhHHHHHHHHHHHHHHhHHHHHHHhhhcCCceeeeeeEEEe-cCCeEEE
Q 010062 398 MWNLTRIEVQLCNMLSPEAPKLSLATYNWVLVFIALVVDNFLYPLSAFRSHFSQSINWSGIRYHL-KNGKISK 469 (519)
Q Consensus 398 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~a~~~~~i~Wrg~~y~~-~~g~~~~ 469 (519)
.+..+.+. . + .+ . .. ...+|+++++.+++|+.++++++|+|||++|++ ++|++..
T Consensus 317 ~~~~~~~~-----~----~--~~--~---~~-~~l~pl~~~l~~~~~~~~~~~~~v~WrGr~y~~~~~g~~~~ 372 (373)
T TIGR03472 317 LRLVMSRA-----T----G--AP--L---RA-AWLLPLRDLLSFAIWVASFFGSRVVWRGRRFRVDRDGRLSP 372 (373)
T ss_pred HHHHHHHH-----h----c--cc--h---hh-hHHHHHHHHHHHHHHHHHHhCCeEEECCcEEEeCCCCccCC
Confidence 11211111 0 0 01 1 11 134899999999999999999999999999999 7888754
No 2
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=100.00 E-value=1e-34 Score=302.82 Aligned_cols=235 Identities=17% Similarity=0.217 Sum_probs=173.9
Q ss_pred CCCCCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcC-CCCCcch
Q 010062 80 QIKLPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAG-LSTTCSQ 158 (519)
Q Consensus 80 ~~~~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~-~~~~~~~ 158 (519)
++..|+||||||+|||++.|.+||+|+++|+||.++|||+|||+|+|+|.++++++.+++|...+++++..+ .+.+++|
T Consensus 36 ~~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~G 115 (384)
T TIGR03469 36 PEAWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSG 115 (384)
T ss_pred CCCCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcc
Confidence 345789999999999999999999999999999669999999999999999999998888743257877653 3567889
Q ss_pred hHHHHHHHHHhccC---CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHH---Hhhccccc
Q 010062 159 KIHNQLVGVENMHK---DSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCI---YEYHMPCS 232 (519)
Q Consensus 159 K~~nl~~gl~~a~~---~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~---~~~~~~~~ 232 (519)
|.+++|.|+++++. ++|+++|+|+|+.++||+|+++++.+++ +++++|++.+.... ++++.+.. ........
T Consensus 116 k~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~-~~~~~vs~~~~~~~-~~~~~~~~~~~~~~~~~~~ 193 (384)
T TIGR03469 116 KLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARA-EGLDLVSLMVRLRC-ESFWEKLLIPAFVFFFQKL 193 (384)
T ss_pred hHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHh-CCCCEEEecccccC-CCHHHHHHHHHHHHHHHHh
Confidence 99999999999931 1899999999999999999999999986 67888887554332 23333211 00000000
Q ss_pred ccc----ccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHH
Q 010062 233 MGF----ATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFG 308 (519)
Q Consensus 233 ~~~----~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 308 (519)
... ..........|+||++||++| +++||+++... .+.||+++++++++.|+++.........+. ....+++
T Consensus 194 ~~~~~~~~~~~~~~~~~G~~~lirr~~~--~~vGGf~~~~~-~~~ED~~L~~r~~~~G~~v~~~~~~~~~s~-r~~~~~~ 269 (384)
T TIGR03469 194 YPFRWVNDPRRRTAAAAGGCILIRREAL--ERIGGIAAIRG-ALIDDCTLAAAVKRSGGRIWLGLAARTRSL-RPYDGLG 269 (384)
T ss_pred cchhhhcCCCccceeecceEEEEEHHHH--HHcCCHHHHhh-CcccHHHHHHHHHHcCCcEEEEecCceEEE-EecCCHH
Confidence 000 001122356899999999999 88999998754 678999999988888877776533322211 1245778
Q ss_pred HHHHHhhhhHHH
Q 010062 309 RYWNYLRKQTFV 320 (519)
Q Consensus 309 ~~~~~~~rq~~~ 320 (519)
++|+...|+...
T Consensus 270 ~~~~~~~r~~~~ 281 (384)
T TIGR03469 270 EIWRMIARTAYT 281 (384)
T ss_pred HHHHHHHHhHHH
Confidence 888666666533
No 3
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=4.1e-32 Score=297.45 Aligned_cols=240 Identities=16% Similarity=0.144 Sum_probs=175.8
Q ss_pred CCCcEEEEeeccCCch-----HHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHH----HHHHHhhcCCCCceEEEEcCC
Q 010062 82 KLPRVTVVMPLKGFGE-----HNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHS----VLRLLQEFKDDVDAKVVVAGL 152 (519)
Q Consensus 82 ~~P~VSVIIP~~ne~~-----~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i----~~~l~~~~~~~~~v~vv~~~~ 152 (519)
..|+|+|+||+|||++ .++++++|+.+|+|+.++|++++||+++|++... .++++++++. +.++.+..+
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~--~~~i~yr~R 199 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGG--EGRIFYRRR 199 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCC--CCcEEEEEC
Confidence 3679999999999995 5999999999999986799988888877765432 3467777764 344555544
Q ss_pred CCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHH----hhc
Q 010062 153 STTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIY----EYH 228 (519)
Q Consensus 153 ~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~----~~~ 228 (519)
..+.+.|++|++.+++..+.++||++++|||+++++|+|.+++..|++||++|+||+.+...+.+++.++... .|.
T Consensus 200 ~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~slfaR~qqf~~~~y~ 279 (691)
T PRK05454 200 RRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGADTLFARLQQFATRVYG 279 (691)
T ss_pred CcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCCCHHHHHHHHHHHHHH
Confidence 4556779999999999865578999999999999999999999999888999999997766666677766431 111
Q ss_pred ccccccccc-CCCcccccccchhccHhhhccccccCcccC------CCCCcccHHHHHHHHHhCCCcEEecCceeeeccC
Q 010062 229 MPCSMGFAT-GGKTFFLWGGCMMMHADDFRLDRYGVVSGL------RDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPL 301 (519)
Q Consensus 229 ~~~~~~~~~-~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~------~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~ 301 (519)
.....+... .+.....||+|+++||++| +++||++.+ ....++||++++.+++++|+++.+.|+......
T Consensus 280 ~~~~~G~~~w~~~~g~f~G~naIiR~~af--~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~~~~e- 356 (691)
T PRK05454 280 PLFAAGLAWWQGGEGNYWGHNAIIRVKAF--AEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDLPGSYE- 356 (691)
T ss_pred HHHHhhhhhhccCccccccceEEEEHHHH--HHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCccccccc-
Confidence 111122221 2233578999999999999 656654433 223578999999999999999999988421111
Q ss_pred CCCCCH----HHHHHHhhhhHHHHHhhhc
Q 010062 302 ASDLSF----GRYWNYLRKQTFVLESYIS 326 (519)
Q Consensus 302 ~~~~~~----~~~~~~~~rq~~~~~~y~~ 326 (519)
+.+.++ +|-.||.++++++.+.+..
T Consensus 357 e~P~tl~~~~~qr~RW~~G~lQ~l~~l~~ 385 (691)
T PRK05454 357 ELPPNLLDELKRDRRWCQGNLQHLRLLLA 385 (691)
T ss_pred cCCCCHHHHHHHHHHHHhchHHHHHHHHh
Confidence 224455 4455677777777765543
No 4
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.8e-34 Score=280.00 Aligned_cols=417 Identities=23% Similarity=0.285 Sum_probs=286.6
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhccccCCCccccccccccccccCC
Q 010062 1 MSALDSIDSLLFSLARAFCTPLAVFIQIQGCMICLILALGWACAAYVR-NREIKRMKDGMRCGNSFSFLCHDISELEHSN 79 (519)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (519)
++++++.+...+++++.+.+. ++++.+++|-.|++++..|...-+.+ ++.....+..--.....++.+.+....++..
T Consensus 1 ~s~~~~i~~~~~~~s~~~~s~-~~~~~~~~~~~~ll~g~~~l~~~l~~~a~~g~vf~~~l~~~h~ia~~Y~~y~lh~ks~ 79 (431)
T KOG2547|consen 1 MSTADSISEIQPSLSRETTSS-ALFVPIQSCPPCLLLGMGWLLAELDGFAVFGFVFVLVLYLVHIIAFCYGRYRLHKKSK 79 (431)
T ss_pred CCcccchhhhcchhhhhccCc-eEEEecCCCcHHHHHHHHHHHHHhhhheeeEeehhhHHHHHHHHHHHHHHHHhhcccc
Confidence 467788899999999999999 89999999999999888888877654 2222111111111122333444555555554
Q ss_pred CC-CCCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcch
Q 010062 80 QI-KLPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQ 158 (519)
Q Consensus 80 ~~-~~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~ 158 (519)
+. .+|.||||+|..+.++++.+++||.+..+|+ .+|+++|+++++||+.++++++..+||+. +.+++..+...|+|+
T Consensus 80 ~~~~LPgVSiikPl~G~d~nl~~Nlesffts~Y~-~~ElLfcv~s~eDpAi~vv~~Ll~kyp~V-dAklf~gG~~vg~np 157 (431)
T KOG2547|consen 80 PDPKLPGVSIIKPLKGVDPNLYHNLESFFTSQYH-KYELLFCVESSEDPAIEVVERLLKKYPNV-DAKLFFGGEKVGLNP 157 (431)
T ss_pred CCCCCCCceEEeecccCCchhHHhHHHHHhhccC-ceEEEEEEccCCCcHHHHHHHHHhhCCCc-ceEEEEcccccccCh
Confidence 44 7999999999999999999999999999999 89999999999999999999999999974 999999999999999
Q ss_pred hHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhh----ccccccc
Q 010062 159 KIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEY----HMPCSMG 234 (519)
Q Consensus 159 K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~----~~~~~~~ 234 (519)
|+||+.-|.+.| ++|+|+++|+|+.+.||.+..|+..|+.+++.|.|++.|+....+++.......+ +......
T Consensus 158 KInN~mpgy~~a--~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~Gf~atle~~~fgTsh~r~yl~ 235 (431)
T KOG2547|consen 158 KINNMMPGYRAA--KYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQGFDATLEQVYFGTSHPRIYLS 235 (431)
T ss_pred hhhccCHHHHHh--cCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeeccccchhhhhheeeccCCceEEEc
Confidence 999999999999 6799999999999999999999999998889999999776654444332222111 1111111
Q ss_pred cccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHH-HHHhCCCcEEecCceeeeccCCCCCCHHHHHHH
Q 010062 235 FATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAA-LAGAHNRLITSPPVAVFPHPLASDLSFGRYWNY 313 (519)
Q Consensus 235 ~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~-~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 313 (519)
-+..+. .+..|...++||+++ |++||+.... +.+.||+..++ .+.+|.+.-.+...+ .++ ....+...+.
T Consensus 236 ~n~~~~-~c~tgms~~mrK~~l--d~~ggi~~f~-~yLaedyFaaksllSRG~ksaist~pa-lQn--Sas~~mssf~-- 306 (431)
T KOG2547|consen 236 GNVLGF-NCSTGMSSMMRKEAL--DECGGISAFG-GYLAEDYFAAKSLLSRGWKSAISTHPA-LQN--SASVTMSSFL-- 306 (431)
T ss_pred cccccc-cccccHHHHHHHHHH--HHhccHHHHH-HHHHHHHHHHHHHHhhhhhhhhcccch-hhh--hhhhHHHHHH--
Confidence 111222 255678889999999 8899998875 37889999997 555555433333222 111 1123345554
Q ss_pred hhhhHHHHHhhhcchhHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHhccCCcccccchhhhhHHHHHHHHHHH
Q 010062 314 LRKQTFVLESYISKVNWIMNRALFSSHCYLSWGFAAPYFMA--LIHVAAVLRIYGKGYSLEETNITSGGLLLVSCLAICT 391 (519)
Q Consensus 314 ~~rq~~~~~~y~~~~~w~~~~~~~~~~~~l~~~~~~P~~~~--l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 391 (519)
+|-. ||...+..+.++..+ ..|+..+ ...+.+++... ....+.+...+++
T Consensus 307 -~Ri~----------rwvkLriaM~Paiii----~epLs~c~~~~~i~afs~p~------------~~~~~l~iy~~ll- 358 (431)
T KOG2547|consen 307 -DRII----------RWVKLRIAMMPAIII----VEPLSECFPSGLIIAFSAPE------------LVRLFLIIYFFLL- 358 (431)
T ss_pred -HHHH----------HhhhhhhhcCcceee----eehHhhhchHHHHHHHhhhh------------hhhhHHHHHHHHH-
Confidence 4544 788877777776654 3555442 22333333321 1121111111111
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCcccchhhHHHHHHHHHHHHHHhHHHHHHHhhhcCCceeeeeeEEEec-CCeEEE
Q 010062 392 FTELLSMWNLTRIEVQLCNMLSPEAPKLSLATYNWVLVFIALVVDNFLYPLSAFRSHFSQSINWSGIRYHLK-NGKISK 469 (519)
Q Consensus 392 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~a~~~~~i~Wrg~~y~~~-~g~~~~ 469 (519)
....|. ..++..++.++.. ..+++.+ ..-+.+.+++...+..+..|++.+.++|+...|... +|..-+
T Consensus 359 ---H~I~w~-~~dyml~~~mq~g---t~~f~~~---e~~~i~~~r~~~~~~~~~sal~n~~fn~et~~~~~~~~~~~~~ 427 (431)
T KOG2547|consen 359 ---HVIIWF-HSDYMLLSGMQPG---TLVFSKL---EFYVIWLLRESTIFYNFLSALWNPHFNWETPLYLLHVGGSAWE 427 (431)
T ss_pred ---HhheeE-eccHHHhccCCCc---ccccccc---ceeeeeccccchHHHHHHHHHcCCccccccceEEEEecceEEe
Confidence 111111 2333333344322 2232222 334678999999999999999999999999999994 555443
No 5
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=100.00 E-value=1.1e-30 Score=277.65 Aligned_cols=221 Identities=15% Similarity=0.147 Sum_probs=172.4
Q ss_pred CCCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHH
Q 010062 82 KLPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIH 161 (519)
Q Consensus 82 ~~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~ 161 (519)
..|+|||+||+|||++.+.+|++|+++|+|| ++|+++|||+|+|+|.++++++.++++ +++++..+++. ||++
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~q~yp-~~eIivVdDgs~D~t~~~~~~~~~~~~---~v~vv~~~~n~---Gka~ 145 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALAQTYT-NIEVIAINDGSSDDTAQVLDALLAEDP---RLRVIHLAHNQ---GKAI 145 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHcCCCC-CeEEEEEECCCCccHHHHHHHHHHhCC---CEEEEEeCCCC---CHHH
Confidence 4689999999999999999999999999999 899999999999999999999988876 57887765443 5999
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHH-Hhhccccc---ccccc
Q 010062 162 NQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCI-YEYHMPCS---MGFAT 237 (519)
Q Consensus 162 nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~ 237 (519)
|+|.|++++ ++|+++++|||+.++||+|+++++++++||++++|+|.+......++.++.. .++..... .....
T Consensus 146 AlN~gl~~a--~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 223 (444)
T PRK14583 146 ALRMGAAAA--RSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRV 223 (444)
T ss_pred HHHHHHHhC--CCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999998 7999999999999999999999999988899999999655443334433321 11111000 00011
Q ss_pred CCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHHHHhhhh
Q 010062 238 GGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYWNYLRKQ 317 (519)
Q Consensus 238 ~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~rq 317 (519)
.+......|+++++||+++ +++||+++. .+.||.|++.++++.|+++.+.|.++..+.. ++++++++ +|+
T Consensus 224 ~g~~~~~sG~~~~~rr~al--~~vGg~~~~---~i~ED~dl~~rl~~~G~~i~~~p~a~~~~~~--p~t~~~~~---~Qr 293 (444)
T PRK14583 224 YGQVFTVSGVVAAFRRRAL--ADVGYWSPD---MITEDIDISWKLQLKHWSVFFEPRGLCWILM--PETLRGLW---KQR 293 (444)
T ss_pred hCCceEecCceeEEEHHHH--HHcCCCCCC---cccccHHHHHHHHHcCCeEEEeeccEEeeeC--CCCHHHHH---HHH
Confidence 1222356689999999999 779998853 6789999998888888899988888776644 56777776 444
Q ss_pred HHHH
Q 010062 318 TFVL 321 (519)
Q Consensus 318 ~~~~ 321 (519)
.||.
T Consensus 294 ~RW~ 297 (444)
T PRK14583 294 LRWA 297 (444)
T ss_pred HHHh
Confidence 4443
No 6
>PRK11204 N-glycosyltransferase; Provisional
Probab=100.00 E-value=4e-30 Score=271.85 Aligned_cols=229 Identities=17% Similarity=0.169 Sum_probs=175.7
Q ss_pred CCCCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhH
Q 010062 81 IKLPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKI 160 (519)
Q Consensus 81 ~~~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~ 160 (519)
...|+|||+||+|||++.+.+|++|+.+|+|| ++|+++|||+|+|+|.++++++.++++ +++++..+++. ||.
T Consensus 51 ~~~p~vsViIp~yne~~~i~~~l~sl~~q~yp-~~eiiVvdD~s~d~t~~~l~~~~~~~~---~v~~i~~~~n~---Gka 123 (420)
T PRK11204 51 KEYPGVSILVPCYNEGENVEETISHLLALRYP-NYEVIAINDGSSDNTGEILDRLAAQIP---RLRVIHLAENQ---GKA 123 (420)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHhCCCC-CeEEEEEECCCCccHHHHHHHHHHhCC---cEEEEEcCCCC---CHH
Confidence 34689999999999999999999999999999 899999999999999999999988877 57887755443 599
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHH-Hhhcccc---ccccc
Q 010062 161 HNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCI-YEYHMPC---SMGFA 236 (519)
Q Consensus 161 ~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~-~~~~~~~---~~~~~ 236 (519)
+|+|.|++++ ++|+++++|+|+.++||+|+++++.+++||++++|+|.+......++..+.. .++.... .....
T Consensus 124 ~aln~g~~~a--~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (420)
T PRK11204 124 NALNTGAAAA--RSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQR 201 (420)
T ss_pred HHHHHHHHHc--CCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999998 7899999999999999999999999987899999998654433333333321 1111100 00001
Q ss_pred cCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHH----H
Q 010062 237 TGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYW----N 312 (519)
Q Consensus 237 ~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~----~ 312 (519)
..+......|+++++||+++ +++||+++. .+.||.+++.++++.|+++.+.|++...++. +.+++.++ |
T Consensus 202 ~~~~~~~~~G~~~~~rr~~l--~~vgg~~~~---~~~ED~~l~~rl~~~G~~i~~~p~~~~~~~~--p~t~~~~~~Qr~R 274 (420)
T PRK11204 202 VYGRVFTVSGVITAFRKSAL--HEVGYWSTD---MITEDIDISWKLQLRGWDIRYEPRALCWILM--PETLKGLWKQRLR 274 (420)
T ss_pred HhCCceEecceeeeeeHHHH--HHhCCCCCC---cccchHHHHHHHHHcCCeEEeccccEEEeEC--cccHHHHHHHHHH
Confidence 11222355789999999999 779998863 5789999998888888899988888776644 45665555 4
Q ss_pred HhhhhHHHHHhhh
Q 010062 313 YLRKQTFVLESYI 325 (519)
Q Consensus 313 ~~~rq~~~~~~y~ 325 (519)
|.+.+++.++++.
T Consensus 275 W~~G~~~~l~~~~ 287 (420)
T PRK11204 275 WAQGGAEVLLKNF 287 (420)
T ss_pred HhcCHHHHHHHHH
Confidence 5555555555553
No 7
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=100.00 E-value=2e-32 Score=259.15 Aligned_cols=194 Identities=22% Similarity=0.367 Sum_probs=168.9
Q ss_pred CcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHH
Q 010062 84 PRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQ 163 (519)
Q Consensus 84 P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl 163 (519)
|+||||||+|||++.+.+||+|+.+|+|| ++|+|+|||+|+|+|.++++++..+++.. +++++....+.|.++|.+|+
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~~~-~~eiivVdd~s~d~t~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~ 78 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQDYP-KYEILFCVQDEDDPAIPVVRKLIAKYPNV-DARLLIGGEKVGINPKVNNL 78 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhccCC-CeEEEEEeCCCcchHHHHHHHHHHHCCCC-cEEEEecCCcCCCCHhHHHH
Confidence 57999999999999999999999999999 79999999999999999999998888853 67777777666777899999
Q ss_pred HHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhccccccccccCCCccc
Q 010062 164 LVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKTFF 243 (519)
Q Consensus 164 ~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (519)
+.|++++ +||+++|+|+|+.++|+||+++++.+. +|++++|++. +
T Consensus 79 n~g~~~a--~~d~i~~~D~D~~~~~~~l~~l~~~~~-~~~~~~v~~~--------------------------------~ 123 (196)
T cd02520 79 IKGYEEA--RYDILVISDSDISVPPDYLRRMVAPLM-DPGVGLVTCL--------------------------------C 123 (196)
T ss_pred HHHHHhC--CCCEEEEECCCceEChhHHHHHHHHhh-CCCCCeEEee--------------------------------c
Confidence 9999998 799999999999999999999999987 5999999983 3
Q ss_pred ccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHHHHhhhhHHHHH
Q 010062 244 LWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYWNYLRKQTFVLE 322 (519)
Q Consensus 244 ~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~rq~~~~~ 322 (519)
+.|++|++||+++ +++||++.... .+.||++++.++++.|+++.+.|.+++++.. +.+++.++ +|+.+|.+
T Consensus 124 ~~g~~~~~r~~~~--~~~ggf~~~~~-~~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~--~~~~~~~~---~q~~rw~~ 194 (196)
T cd02520 124 AFGKSMALRREVL--DAIGGFEAFAD-YLAEDYFLGKLIWRLGYRVVLSPYVVMQPLG--STSLASFW---RRQLRWSR 194 (196)
T ss_pred ccCceeeeEHHHH--HhccChHHHhH-HHHHHHHHHHHHHHcCCeEEEcchheeccCC--cccHHHHH---HHHHHHhc
Confidence 4578999999999 77999987533 5689999999888889999999888776543 56888888 88885443
No 8
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.97 E-value=1.3e-28 Score=261.24 Aligned_cols=230 Identities=18% Similarity=0.221 Sum_probs=169.1
Q ss_pred CCCCcEEEEeeccCCchHHHHHHHHHHhccCCCC-eEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchh
Q 010062 81 IKLPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGP-LEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQK 159 (519)
Q Consensus 81 ~~~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~-~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K 159 (519)
...|.||||||+|||++.+.+||+|+.+|+||.+ +||++|||+|+|+|.++++++.+++| ++++...+++ .||
T Consensus 46 ~~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~---~v~v~~~~~~---~Gk 119 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFP---GLSLRYMNSD---QGK 119 (439)
T ss_pred CCCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCC---CeEEEEeCCC---CCH
Confidence 3478999999999999999999999999999954 79999999999999999999888887 4565554433 469
Q ss_pred HHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCC-----C----hhhHHH-Hhhcc
Q 010062 160 IHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSG-----S----LGSYCI-YEYHM 229 (519)
Q Consensus 160 ~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~-----~----~~~~~~-~~~~~ 229 (519)
.+|+|.|++.+ ++|+++++|+|+.++||+|+++++.|++||++++++|.....++. + +..... .++..
T Consensus 120 a~AlN~gl~~s--~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 197 (439)
T TIGR03111 120 AKALNAAIYNS--IGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQ 197 (439)
T ss_pred HHHHHHHHHHc--cCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHH
Confidence 99999999998 789999999999999999999999998889999999854332211 1 111111 11111
Q ss_pred cccccccc---CCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHH-HhCCCcEEecCceeeeccCCCCC
Q 010062 230 PCSMGFAT---GGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALA-GAHNRLITSPPVAVFPHPLASDL 305 (519)
Q Consensus 230 ~~~~~~~~---~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~-~~~g~~v~~~~~~~~~~~~~~~~ 305 (519)
....+... .+....+.|+++++||+++ +++||++.. .++||++++.++ +.+|+++.+.|++++.+.. +.
T Consensus 198 ~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l--~~vggf~~~---~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~--p~ 270 (439)
T TIGR03111 198 AFLAGRNFESQVNSLFTLSGAFSAFRRETI--LKTQLYNSE---TVGEDTDMTFQIRELLDGKVYLCENAIFYVDP--ID 270 (439)
T ss_pred HHHhhhHHHHhcCCeEEEccHHHhhhHHHH--HHhCCCCCC---CcCccHHHHHHHHHhcCCeEEECCCCEEEEEC--Cc
Confidence 11111111 1122356789999999999 779998753 679999999655 4567788888888777644 44
Q ss_pred CHHHHH----HHhhhhHHHHHhhh
Q 010062 306 SFGRYW----NYLRKQTFVLESYI 325 (519)
Q Consensus 306 ~~~~~~----~~~~rq~~~~~~y~ 325 (519)
++++++ ||.+..++..+.+.
T Consensus 271 t~~~~~~QR~RW~rG~~qv~~~~~ 294 (439)
T TIGR03111 271 GLNKLYTQRQRWQRGELEVSHMFF 294 (439)
T ss_pred CHHHHHHHHHHHhccHHHHHHHHH
Confidence 666555 44445555555444
No 9
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.97 E-value=4e-29 Score=242.59 Aligned_cols=222 Identities=18% Similarity=0.135 Sum_probs=163.1
Q ss_pred CcEEEEeeccCCchHHHHHHHHHHhccCCCC-eEEEEEECCCCCcHHHHHHHHHhhcCCC-CceEEEEcCCCCCcchhHH
Q 010062 84 PRVTVVMPLKGFGEHNLLNWRSQVTSLYGGP-LEFLFVVESKEDPAYHSVLRLLQEFKDD-VDAKVVVAGLSTTCSQKIH 161 (519)
Q Consensus 84 P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~-~eiIvV~d~s~D~t~~i~~~l~~~~~~~-~~v~vv~~~~~~~~~~K~~ 161 (519)
|+||||||+|||++.|.+||+|+++|+||.+ +||||||| |+|+|.++++++..+++.. ++++.+....+. +.|.+
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~--G~k~~ 77 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRT--GYKAG 77 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCC--CCchH
Confidence 5799999999999999999999999999843 78877776 9999999999887665421 245555544333 34888
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc-CCCCChhhHHH---Hhhcccc-ccccc
Q 010062 162 NQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLD-LPSGSLGSYCI---YEYHMPC-SMGFA 236 (519)
Q Consensus 162 nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~-~~~~~~~~~~~---~~~~~~~-~~~~~ 236 (519)
|+|.|++++ +||||+++|+|+.++|+||+++...++ +|++++|++.... .+..++..+.. ..+.... ..+..
T Consensus 78 a~n~g~~~a--~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVA--KGEYVAIFDADFVPPPDFLQKTPPYFA-DPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhC--CCCEEEEEcCCCCCChHHHHHhhhhhc-CCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 999999999 799999999999999999999887776 6999999983222 22334433321 1111100 00111
Q ss_pred cCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHHHHhhh
Q 010062 237 TGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYWNYLRK 316 (519)
Q Consensus 237 ~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r 316 (519)
..+....+.|+++++||+++ +++||+++. .+.||++++.++.+.|+++.+.|.+.+.+.. +.+++.++ +|
T Consensus 155 ~~~~~~~~~g~~~~~rr~~~--~~vgg~~~~---~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~--~~~~~~~~---~q 224 (232)
T cd06437 155 STGLFFNFNGTAGVWRKECI--EDAGGWNHD---TLTEDLDLSYRAQLKGWKFVYLDDVVVPAEL--PASMSAYR---SQ 224 (232)
T ss_pred hcCCeEEeccchhhhhHHHH--HHhCCCCCC---cchhhHHHHHHHHHCCCeEEEeccceeeeeC--CcCHHHHH---HH
Confidence 11222245688889999999 779999873 5789999998888888888888888777654 56889988 77
Q ss_pred hHHHH
Q 010062 317 QTFVL 321 (519)
Q Consensus 317 q~~~~ 321 (519)
+.+|.
T Consensus 225 ~~rW~ 229 (232)
T cd06437 225 QHRWS 229 (232)
T ss_pred HHHhc
Confidence 77443
No 10
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.96 E-value=3.7e-30 Score=248.66 Aligned_cols=221 Identities=19% Similarity=0.206 Sum_probs=151.0
Q ss_pred CcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHH
Q 010062 84 PRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQ 163 (519)
Q Consensus 84 P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl 163 (519)
|+||||||+|||++.+.+||+|+++|+|| ++|+++|||+++|++.+.++++.+++|.. +++++..+.+.+.++|..++
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~~-~~~v~vvd~~~~~~~~~~~~~~~~~~~~~-~v~vi~~~~~~g~~~k~~a~ 78 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDYP-RLEVVVVDDGSDDETAEILRALAARYPRV-RVRVIRRPRNPGPGGKARAL 78 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHHH-TEEEEEEEE-SSS-GCTTHHHHHHTTGG--GEEEEE----HHHHHHHHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCC-CeEEEEEECCCChHHHHHHHHHHHHcCCC-ceEEeecCCCCCcchHHHHH
Confidence 68999999999999999999999999997 89999999999999999999999999864 68888877666666899999
Q ss_pred HHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHH-Hh---hccccccccccCC
Q 010062 164 LVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCI-YE---YHMPCSMGFATGG 239 (519)
Q Consensus 164 ~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~ 239 (519)
|.+++++ ++|+++++|+|+.++|++|+++++.++ +|++++|++.....+.+++.+... .. .+..........+
T Consensus 79 n~~~~~~--~~d~i~~lD~D~~~~p~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (228)
T PF13641_consen 79 NEALAAA--RGDYILFLDDDTVLDPDWLERLLAAFA-DPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRRALG 155 (228)
T ss_dssp HHHHHH-----SEEEEE-SSEEE-CHHHHHHHHHHH-BSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B---
T ss_pred HHHHHhc--CCCEEEEECCCcEECHHHHHHHHHHHH-hCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 9999999 689999999999999999999999995 699999998554444444433211 11 1110111111122
Q ss_pred CcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHHHHhhhhHH
Q 010062 240 KTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYWNYLRKQTF 319 (519)
Q Consensus 240 ~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~rq~~ 319 (519)
. .+++|+++++||+++ +++|++++ ....||.+++.++++.|+++.+.|.+.+.|.. +.+++.++ +++.+
T Consensus 156 ~-~~~~G~~~~~rr~~~--~~~g~fd~---~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~--~~~~~~~~---~q~~R 224 (228)
T PF13641_consen 156 V-AFLSGSGMLFRRSAL--EEVGGFDP---FILGEDFDLCLRLRAAGWRIVYAPDALVYHEE--PSSLKAFF---KQRFR 224 (228)
T ss_dssp --S-B--TEEEEEHHHH--HHH-S--S---SSSSHHHHHHHHHHHTT--EEEEEEEEEEE----SSSTHHHH---HHHHH
T ss_pred e-eeccCcEEEEEHHHH--HHhCCCCC---CCcccHHHHHHHHHHCCCcEEEECCcEEEEeC--CCCHHHHH---HHHhc
Confidence 2 356899999999999 77999998 26679999999888899899998888777764 56888888 67663
Q ss_pred H
Q 010062 320 V 320 (519)
Q Consensus 320 ~ 320 (519)
|
T Consensus 225 W 225 (228)
T PF13641_consen 225 W 225 (228)
T ss_dssp H
T ss_pred c
Confidence 3
No 11
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.96 E-value=2.4e-27 Score=263.24 Aligned_cols=225 Identities=10% Similarity=0.051 Sum_probs=163.0
Q ss_pred CCCCCcEEEEeeccCCch-HHHHHHHHHHhccCCCC-eEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcc
Q 010062 80 QIKLPRVTVVMPLKGFGE-HNLLNWRSQVTSLYGGP-LEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCS 157 (519)
Q Consensus 80 ~~~~P~VSVIIP~~ne~~-~L~~~L~Sl~~q~yp~~-~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~ 157 (519)
.+..|+|||+||+|||+. .+++++.+.++||||.+ +||+++||+|+|++.++++++ +++++.++.+ .+
T Consensus 256 ~~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~--------~v~yI~R~~n--~~ 325 (852)
T PRK11498 256 MSLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV--------GVKYIARPTH--EH 325 (852)
T ss_pred cCCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC--------CcEEEEeCCC--Cc
Confidence 345789999999999996 56789999999999964 999999999999987776552 5777766543 45
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCC----ChhhHH------HHhh
Q 010062 158 QKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSG----SLGSYC------IYEY 227 (519)
Q Consensus 158 ~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~----~~~~~~------~~~~ 227 (519)
+|++|+|.|++++ +||||+++|||+.++||+|++++..|.+||++|+|++.......+ ++.... ...+
T Consensus 326 gKAGnLN~aL~~a--~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy 403 (852)
T PRK11498 326 AKAGNINNALKYA--KGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFY 403 (852)
T ss_pred chHHHHHHHHHhC--CCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHH
Confidence 7999999999999 799999999999999999999999987789999999843222111 111100 0001
Q ss_pred ccccccccccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCH
Q 010062 228 HMPCSMGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSF 307 (519)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 307 (519)
.. ...+.... ...+++|+|+++||+++ +++||+++. .++||++++.++++.|+++.+.+....... .++++
T Consensus 404 ~~-iq~g~~~~-~a~~~~Gs~aviRReaL--eeVGGfd~~---titED~dlslRL~~~Gyrv~yl~~~~a~gl--aPesl 474 (852)
T PRK11498 404 GL-VQDGNDMW-DATFFCGSCAVIRRKPL--DEIGGIAVE---TVTEDAHTSLRLHRRGYTSAYMRIPQAAGL--ATESL 474 (852)
T ss_pred HH-HHhHHHhh-cccccccceeeeEHHHH--HHhcCCCCC---ccCccHHHHHHHHHcCCEEEEEeccceeEE--CCCCH
Confidence 00 00011111 12367899999999999 889999863 679999999888888887776544433322 24465
Q ss_pred HHH----HHHhhhhHHHHHhhh
Q 010062 308 GRY----WNYLRKQTFVLESYI 325 (519)
Q Consensus 308 ~~~----~~~~~rq~~~~~~y~ 325 (519)
+.+ .||.++.++..+++.
T Consensus 475 ~~~~~QR~RWarG~lQi~r~~~ 496 (852)
T PRK11498 475 SAHIGQRIRWARGMVQIFRLDN 496 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 544 567777777777643
No 12
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.96 E-value=1.2e-27 Score=267.00 Aligned_cols=227 Identities=11% Similarity=0.119 Sum_probs=164.0
Q ss_pred CCCCCcEEEEeeccCCchHH-HHHHHHHHhccCCC-CeEEEEEECCCCCcH--------------HHHHHHHHhhcCCCC
Q 010062 80 QIKLPRVTVVMPLKGFGEHN-LLNWRSQVTSLYGG-PLEFLFVVESKEDPA--------------YHSVLRLLQEFKDDV 143 (519)
Q Consensus 80 ~~~~P~VSVIIP~~ne~~~L-~~~L~Sl~~q~yp~-~~eiIvV~d~s~D~t--------------~~i~~~l~~~~~~~~ 143 (519)
++..|+|||+||+|||++.+ ++|++++.+||||. ++||++|||+|+|.| .+.+++++++.
T Consensus 127 ~~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~---- 202 (713)
T TIGR03030 127 PEEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL---- 202 (713)
T ss_pred cccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc----
Confidence 34578999999999999765 67999999999995 499999999999976 24455565553
Q ss_pred ceEEEEcCCCCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccC-CC---CCh
Q 010062 144 DAKVVVAGLSTTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDL-PS---GSL 219 (519)
Q Consensus 144 ~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~-~~---~~~ 219 (519)
+++++.+++ +.++|++|+|.|++++ +||||+++|||+.++||+|++++..|++||++++|++..... |+ +++
T Consensus 203 ~v~yi~r~~--n~~~KAgnLN~al~~a--~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl 278 (713)
T TIGR03030 203 GVNYITRPR--NVHAKAGNINNALKHT--DGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNL 278 (713)
T ss_pred CcEEEECCC--CCCCChHHHHHHHHhc--CCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhh
Confidence 577776544 4567999999999999 789999999999999999999999998789999999843322 22 111
Q ss_pred h--hHH----HHhhccccccccccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecC
Q 010062 220 G--SYC----IYEYHMPCSMGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPP 293 (519)
Q Consensus 220 ~--~~~----~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~ 293 (519)
. ... ...+.. ...+....+. .+++|+|+++||+++ +++||+++. .+.||++++.++++.|+++.+.+
T Consensus 279 ~~~~~~~~e~~~f~~~-i~~g~~~~~~-~~~~Gs~~~iRR~al--~~iGGf~~~---~vtED~~l~~rL~~~G~~~~y~~ 351 (713)
T TIGR03030 279 GTFRRMPNENELFYGL-IQDGNDFWNA-AFFCGSAAVLRREAL--DEIGGIAGE---TVTEDAETALKLHRRGWNSAYLD 351 (713)
T ss_pred HHHHHhhhHHHHHHHH-HHHHHhhhCC-eeecCceeEEEHHHH--HHcCCCCCC---CcCcHHHHHHHHHHcCCeEEEec
Confidence 1 110 000110 1111111122 367899999999999 789999863 67999999987777888876666
Q ss_pred ceeeeccCCCCCCHHHHH----HHhhhhHHHHHh
Q 010062 294 VAVFPHPLASDLSFGRYW----NYLRKQTFVLES 323 (519)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~----~~~~rq~~~~~~ 323 (519)
.....+. .+.++++++ ||.+..++..+.
T Consensus 352 ~~~~~g~--~p~sl~~~~~Qr~RWa~G~~qi~~~ 383 (713)
T TIGR03030 352 RPLIAGL--APETLSGHIGQRIRWAQGMMQIFRL 383 (713)
T ss_pred ccccccc--CCCCHHHHHHHHHHHhcChHHHHhh
Confidence 5555433 356776655 455555555554
No 13
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.96 E-value=3.2e-28 Score=239.09 Aligned_cols=228 Identities=17% Similarity=0.122 Sum_probs=164.0
Q ss_pred EEEEeeccCCchH-HHHHHHHHHh----ccCCCCeEEEEEECCCCCcHHHHHH-----HHHhhcCCCCceEEEEcCCCCC
Q 010062 86 VTVVMPLKGFGEH-NLLNWRSQVT----SLYGGPLEFLFVVESKEDPAYHSVL-----RLLQEFKDDVDAKVVVAGLSTT 155 (519)
Q Consensus 86 VSVIIP~~ne~~~-L~~~L~Sl~~----q~yp~~~eiIvV~d~s~D~t~~i~~-----~l~~~~~~~~~v~vv~~~~~~~ 155 (519)
|||+||+|||++. +.++|+++++ |+|+.++||+++ ||++|++..+.+ +++++++...+++++.+.. +
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vl-dD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~--~ 77 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFIL-SDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRE--N 77 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEE-CCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCC--C
Confidence 6999999999987 8999999875 787337999555 556666654443 3777777533555555544 5
Q ss_pred cchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHH----Hhhcccc
Q 010062 156 CSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCI----YEYHMPC 231 (519)
Q Consensus 156 ~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~----~~~~~~~ 231 (519)
.+.|++|++.++.....++|+|+++|||+.++||+|.+++++|++||++|+|++.....+..++.+++. ..+....
T Consensus 78 ~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~~ 157 (254)
T cd04191 78 TGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETLFARLQQFANRLYGPVF 157 (254)
T ss_pred CCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCCHHHHHHHHHHHHHHHHH
Confidence 567999999999863237899999999999999999999999987899999999665555567766643 1111111
Q ss_pred cccccc-CCCcccccccchhccHhhhcccc------ccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCC
Q 010062 232 SMGFAT-GGKTFFLWGGCMMMHADDFRLDR------YGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASD 304 (519)
Q Consensus 232 ~~~~~~-~~~~~~~~G~~~~~Rr~~~~~~~------~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~ 304 (519)
..+... .+...+++|+|+++||++| ++ +||+..+....++||++++.++.+.|+++.+.|.++.... ..+
T Consensus 158 ~~~~~~~~~~~~~~~G~~~~~Rr~al--~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~~~~-~~p 234 (254)
T cd04191 158 GRGLAAWQGGEGNYWGHNAIIRVAAF--MEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLEGSYE-ECP 234 (254)
T ss_pred HHHHHHhcCCccCccceEEEEEHHHH--HHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCcceEe-ECC
Confidence 122221 1223478899999999999 55 4555556433688999999888888889998887653221 236
Q ss_pred CCHHHHHHHhhhhHHHHH
Q 010062 305 LSFGRYWNYLRKQTFVLE 322 (519)
Q Consensus 305 ~~~~~~~~~~~rq~~~~~ 322 (519)
.+++.++ +|+.||.+
T Consensus 235 ~~~~~~~---~qr~RW~~ 249 (254)
T cd04191 235 PTLIDFL---KRDRRWCQ 249 (254)
T ss_pred CCHHHHH---HHHHHHHh
Confidence 6889888 88885443
No 14
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.96 E-value=1.4e-25 Score=238.31 Aligned_cols=228 Identities=11% Similarity=-0.003 Sum_probs=159.3
Q ss_pred CCCCcEEEEeeccCCchHHHHHHHHHH-hccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchh
Q 010062 81 IKLPRVTVVMPLKGFGEHNLLNWRSQV-TSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQK 159 (519)
Q Consensus 81 ~~~P~VSVIIP~~ne~~~L~~~L~Sl~-~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K 159 (519)
.+.|+++|+||+|||++.|.++|+|++ +++|| ++||++++|+++|+|.+.++++.+++| +++++..+ +.+.++|
T Consensus 63 ~~~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~-~~eIiVv~d~ndd~T~~~v~~l~~~~p---~v~~vv~~-~~gp~~K 137 (504)
T PRK14716 63 VPEKRIAIFVPAWREADVIGRMLEHNLATLDYE-NYRIFVGTYPNDPATLREVDRLAARYP---RVHLVIVP-HDGPTSK 137 (504)
T ss_pred CCCCceEEEEeccCchhHHHHHHHHHHHcCCCC-CeEEEEEECCCChhHHHHHHHHHHHCC---CeEEEEeC-CCCCCCH
Confidence 347899999999999999999999965 67998 899999999999999999999999998 46655543 3456789
Q ss_pred HHHHHHHHHhcc-------CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCC--CCChhhH--HH--Hh
Q 010062 160 IHNQLVGVENMH-------KDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLP--SGSLGSY--CI--YE 226 (519)
Q Consensus 160 ~~nl~~gl~~a~-------~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~--~~~~~~~--~~--~~ 226 (519)
.+|+|.+++++. .++|+++++|||+.++|++|+.+...+. +.++|+......+ ..++.+. .. .+
T Consensus 138 a~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~---~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~ 214 (504)
T PRK14716 138 ADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLP---RHDFVQLPVFSLPRDWGEWVAGTYMDEFAE 214 (504)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcC---CCCEEecceeccCCchhHHHHHHHHHHHHH
Confidence 999999987641 1349999999999999999998876654 3466775222221 1222221 11 11
Q ss_pred hccccccccccCCCcccccccchhccHhhhccccc----cC--cccCCCCCcccHHHHHHHHHhCCCcEEecCceeee--
Q 010062 227 YHMPCSMGFATGGKTFFLWGGCMMMHADDFRLDRY----GV--VSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFP-- 298 (519)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~----Gg--~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~-- 298 (519)
.+..........+....+.|.+++|||+++ +++ || +++ ..++||++++.++.+.|+++.+.|.++..
T Consensus 215 ~~~~~l~~r~~LG~~~~~~Gtg~afRR~aL--e~l~~~~GG~~fd~---~sLTED~dLglRL~~~G~rv~y~p~ai~~~~ 289 (504)
T PRK14716 215 SHLKDLPVREALGGLIPSAGVGTAFSRRAL--ERLAAERGGQPFDS---DSLTEDYDIGLRLKRAGFRQIFVRVRADDTT 289 (504)
T ss_pred HHHHHHHHHHhcCCccccCCeeEEeEHHHH--HHHHhhcCCCCCCC---CCcchHHHHHHHHHHCCCEEEEecccccccc
Confidence 111111111222222356789999999999 655 33 543 37999999998878888888877666322
Q ss_pred -----------ccCCCCCCHHHHHHHhhhhHHHHHhh
Q 010062 299 -----------HPLASDLSFGRYWNYLRKQTFVLESY 324 (519)
Q Consensus 299 -----------~~~~~~~~~~~~~~~~~rq~~~~~~y 324 (519)
..+..+.+++.++ +|+.||.+.+
T Consensus 290 ~~~~~~~~~v~t~e~~P~t~~a~~---rQR~RW~~Gi 323 (504)
T PRK14716 290 DRPDRRGEPIATREFFPDTFKAAV---RQKARWIYGI 323 (504)
T ss_pred cccccccccccccccCccCHHHHH---HHHHHHHhch
Confidence 1122367888888 6666665543
No 15
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=8.1e-27 Score=236.11 Aligned_cols=305 Identities=17% Similarity=0.126 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccccccccccccccCCCCCCCcEEEEeeccCCch-----HHHHHH
Q 010062 29 QGCMICLILALGWACAAYVRNREIKRMKDGMRCGNSFSFLCHDISELEHSNQIKLPRVTVVMPLKGFGE-----HNLLNW 103 (519)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~P~VSVIIP~~ne~~-----~L~~~L 103 (519)
+.+|-|+++.|+.++.+|+--.-++ ++. . .++...|+|+.. +..|++|+|||+. .++.+.
T Consensus 104 a~lFcwvs~~F~tAl~GF~~L~~~~---~r~-~---------~~~p~~p~p~~h--rTAilmPiynEd~~rVfAgLrA~~ 168 (736)
T COG2943 104 AVLFCWVSAGFWTALMGFLVLLFGR---DRY-L---------SIAPNEPLPDLH--RTAILMPIYNEDVNRVFAGLRATY 168 (736)
T ss_pred HHHHHHHHHHHHHHHHHHhheeecC---CCc-C---------CCCCCCCCCccc--ceeEEeeccccCHHHHHHHHHHHH
Confidence 5555667777888888875211110 000 0 112223444433 6999999999996 688999
Q ss_pred HHHHhccCCCCeEEEEEECCCCCcHHHHHHH-----HHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCCCcEEE
Q 010062 104 RSQVTSLYGGPLEFLFVVESKEDPAYHSVLR-----LLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKDSKYVL 178 (519)
Q Consensus 104 ~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~-----l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~gd~vv 178 (519)
+|+.+...-.+|++ +|..||.|+...+.|+ ++++..+ ..+++++.++.+...|.+|+...+++.+..+++++
T Consensus 169 eSla~Tg~~~~FD~-FVLSDs~dpdialAEq~a~~~l~~e~~g--~~~ifYRrRr~n~~RKaGNIaDfcrRwG~~Y~~Ml 245 (736)
T COG2943 169 ESLAATGHAEHFDF-FVLSDSRDPDIALAEQKAWAELCRELGG--EGNIFYRRRRRNVKRKAGNIADFCRRWGSAYSYML 245 (736)
T ss_pred HHHHhhCCcccceE-EEEcCCCCchhhhhHHHHHHHHHHHhCC--CCceeeehHhhhhcccccCHHHHHHHhCcccceEE
Confidence 99999887767887 6778888888877765 5555544 57888888888888999999999999988899999
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHH----Hhhcccccccccc-CCCcccccccchhccH
Q 010062 179 FLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCI----YEYHMPCSMGFAT-GGKTFFLWGGCMMMHA 253 (519)
Q Consensus 179 ~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~G~~~~~Rr 253 (519)
++|||+++.+|.+.++++.||.||++|++++.|......++.+++. ..|.+....|..+ .+..+..||+|.++|.
T Consensus 246 VLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt 325 (736)
T COG2943 246 VLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGDTLYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRT 325 (736)
T ss_pred EeecccccCchHHHHHHHHHhhCCCCceeecchhhcCcchHHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeec
Confidence 9999999999999999999999999999999887776667777643 3344433344443 3334589999999999
Q ss_pred hhhccccccCcccCC-CC-----CcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCH----HHHHHHhhhhHHHHHh
Q 010062 254 DDFRLDRYGVVSGLR-DG-----GYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSF----GRYWNYLRKQTFVLES 323 (519)
Q Consensus 254 ~~~~~~~~Gg~~~~~-~g-----~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~rq~~~~~~ 323 (519)
++|. +..|...+. .+ -+++|+..+.++|++||.+...++.--.+++ .+.++ ++-.||+++|+++.+.
T Consensus 326 ~aF~--~hcgLp~LpG~~pFgG~ilSHDfvEAALmRRaGW~v~ia~dL~GSyEE-~PpnLlD~l~RDRRWC~GNLqh~rl 402 (736)
T COG2943 326 KAFI--EHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWIAYDLDGSYEE-LPPNLLDELKRDRRWCHGNLQHFRL 402 (736)
T ss_pred hhhH--HhcCCCCCCCCCCCCccccchHHHHHHHHhhcCceEEEeccCCCchhh-CCchHHHHHhhhhHhhhcchhhcee
Confidence 9994 333344332 22 2459999999999999999988765433333 33343 5666888999999998
Q ss_pred hhcch--hHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010062 324 YISKV--NWIMNRALFSSHCYLSWGFAAPYFMALIHV 358 (519)
Q Consensus 324 y~~~~--~w~~~~~~~~~~~~l~~~~~~P~~~~l~~l 358 (519)
+..++ +..+.+...+..+|++ .|+++.++++
T Consensus 403 ~~~~GlHwvsR~h~~tGVmsYls----aPlWfl~ll~ 435 (736)
T COG2943 403 FLVKGLHWVSRAHFLTGVMSYLS----APLWFLFLLL 435 (736)
T ss_pred eccCCccHHHHHHHHHHHHHHHh----hHHHHHHHHH
Confidence 87765 5567777777788876 6766554443
No 16
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.96 E-value=1.7e-27 Score=232.80 Aligned_cols=223 Identities=15% Similarity=0.118 Sum_probs=161.1
Q ss_pred CcEEEEeeccCCchHHHHHHHHHHhccCCC-CeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHH
Q 010062 84 PRVTVVMPLKGFGEHNLLNWRSQVTSLYGG-PLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHN 162 (519)
Q Consensus 84 P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~-~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~n 162 (519)
|.||||||+|||++.|.+||+|+++|+||. ++|+|+|||+|+|.|.++++++... . +.+++..... +..||..+
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~--~--~~~i~~~~~~-~~~G~~~a 75 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLP--S--IFRVVVVPPS-QPRTKPKA 75 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccC--C--CeeEEEecCC-CCCchHHH
Confidence 689999999999999999999999999984 3999999999999999998886432 1 3444443322 33478899
Q ss_pred HHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeccccCC-CCChhhHHH-Hhh--ccc-cccccc
Q 010062 163 QLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKN-PEIFIQTGYPLDLP-SGSLGSYCI-YEY--HMP-CSMGFA 236 (519)
Q Consensus 163 l~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~d-p~vg~V~g~~~~~~-~~~~~~~~~-~~~--~~~-~~~~~~ 236 (519)
+|.|++++ +||||+|+|+|+.++|++|.++++.++++ ++++++++...... ..++..+.. ..+ ... ...+..
T Consensus 76 ~n~g~~~a--~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 76 CNYALAFA--RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHhc--CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 79999999999999999999999999754 88888887322222 223322211 111 000 001111
Q ss_pred cCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHHHHhhh
Q 010062 237 TGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYWNYLRK 316 (519)
Q Consensus 237 ~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r 316 (519)
..+....+.|+++++||+++ +++||+++. .+.||++++.++.+.|+++.+.+..++.+ .+.+++.++ ++
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~--~~vgg~~~~---~~~eD~~l~~rl~~~G~r~~~~~~~~~~~---~~~~~~~~~---~q 222 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVL--RELGGWDPF---NVTEDADLGLRLARAGYRTGVLNSTTLEE---ANNALGNWI---RQ 222 (241)
T ss_pred hcCCeeecCCchHHhhHHHH--HHcCCCCcc---cchhhHHHHHHHHHCCceEEEeccccccc---CcHhHHHHH---HH
Confidence 11222245688899999999 779999863 57899999987777888888877765442 366888887 88
Q ss_pred hHHHHHhh
Q 010062 317 QTFVLESY 324 (519)
Q Consensus 317 q~~~~~~y 324 (519)
|.+|.+.+
T Consensus 223 ~~Rw~~g~ 230 (241)
T cd06427 223 RSRWIKGY 230 (241)
T ss_pred HHHHhccH
Confidence 88555533
No 17
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.95 E-value=3e-27 Score=228.78 Aligned_cols=217 Identities=13% Similarity=0.082 Sum_probs=163.0
Q ss_pred CcEEEEeeccCCc-hHHHHHHHHHHhccCCCC--eEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhH
Q 010062 84 PRVTVVMPLKGFG-EHNLLNWRSQVTSLYGGP--LEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKI 160 (519)
Q Consensus 84 P~VSVIIP~~ne~-~~L~~~L~Sl~~q~yp~~--~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~ 160 (519)
|+||||||+|||+ +.+++||+|++.|+|| + +|+|||||+|+|++.++++++..++ +++++.... +.++|.
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~-~~~~eiivvdd~s~d~t~~~~~~~~~~~----~~~~~~~~~--~~~~~~ 73 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYP-HDKLRVYVLDDGRRPELRALAAELGVEY----GYRYLTRPD--NRHAKA 73 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCC-cccEEEEEEcCCCchhHHHHHHHhhccc----CceEEEeCC--CCCCcH
Confidence 6799999999987 5799999999999999 5 9999999999999999999876553 355555443 334688
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCCh--hhHHH----Hhhccccccc
Q 010062 161 HNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSL--GSYCI----YEYHMPCSMG 234 (519)
Q Consensus 161 ~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~--~~~~~----~~~~~~~~~~ 234 (519)
+|+|.|++++ ++||++++|+|+.++|++|+++++.++++|++++|++.......... ..... ..+......+
T Consensus 74 ~~~n~~~~~a--~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T cd06421 74 GNLNNALAHT--TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG 151 (234)
T ss_pred HHHHHHHHhC--CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 8999999998 79999999999999999999999999877999999984433322211 11100 0110000001
Q ss_pred cccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHHHHh
Q 010062 235 FATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYWNYL 314 (519)
Q Consensus 235 ~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (519)
....+ ...+.|+++++||++| +++|++++. .+.||++++.++.+.|+++.+.+.+.+.+.. +.+++.++
T Consensus 152 ~~~~~-~~~~~g~~~~~r~~~~--~~ig~~~~~---~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~--~~~~~~~~--- 220 (234)
T cd06421 152 RDRWG-AAFCCGSGAVVRREAL--DEIGGFPTD---SVTEDLATSLRLHAKGWRSVYVPEPLAAGLA--PETLAAYI--- 220 (234)
T ss_pred HhhcC-CceecCceeeEeHHHH--HHhCCCCcc---ceeccHHHHHHHHHcCceEEEecCccccccC--CccHHHHH---
Confidence 11111 2367799999999999 779999853 6789999998888888888888888776654 55777776
Q ss_pred hhhHHH
Q 010062 315 RKQTFV 320 (519)
Q Consensus 315 ~rq~~~ 320 (519)
+++.+|
T Consensus 221 ~q~~rw 226 (234)
T cd06421 221 KQRLRW 226 (234)
T ss_pred HHHHHH
Confidence 666633
No 18
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.95 E-value=8.4e-27 Score=226.58 Aligned_cols=216 Identities=12% Similarity=0.063 Sum_probs=160.2
Q ss_pred EEEeeccCCc-hHHHHHHHHHHhccCCCCeEEEEEECCCCCcHH-HHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHH
Q 010062 87 TVVMPLKGFG-EHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAY-HSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQL 164 (519)
Q Consensus 87 SVIIP~~ne~-~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~-~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~ 164 (519)
|||||+|||+ +.+.+||+|+.+|+|| ++|+|||||+|+|++. ++++++.++++. +++++...++.| +|.+++|
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~-~~eiiVvdd~s~D~t~~~~i~~~~~~~~~--~i~~i~~~~~~G--~~~~a~n 75 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYP-NFEVIVIDNNTKDEALWKPVEAHCAQLGE--RFRFFHVEPLPG--AKAGALN 75 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCC-CcEEEEEeCCCCchhHHHHHHHHHHHhCC--cEEEEEcCCCCC--CchHHHH
Confidence 7999999998 6899999999999999 8999999999999985 677787777653 577776654443 3778899
Q ss_pred HHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccC-CCCChhhHHH-Hhhcc--c-cccccccCC
Q 010062 165 VGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDL-PSGSLGSYCI-YEYHM--P-CSMGFATGG 239 (519)
Q Consensus 165 ~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~-~~~~~~~~~~-~~~~~--~-~~~~~~~~~ 239 (519)
.|++++..++|+|+|+|+|+.++|++|.+++..++ ++++++|++..... ...+...... ..+.. . .........
T Consensus 76 ~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (236)
T cd06435 76 YALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERN 154 (236)
T ss_pred HHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccC
Confidence 99999854579999999999999999999999997 59999998732221 1222222211 11100 0 000011111
Q ss_pred CcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHHHHhhhhHH
Q 010062 240 KTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYWNYLRKQTF 319 (519)
Q Consensus 240 ~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~rq~~ 319 (519)
. .++.|++|++||++| +++||+++. .+.||++++.++++.|+++.+.|..+.++.. +.++++++ +|+.+
T Consensus 155 ~-~~~~g~~~~~rr~~~--~~iGgf~~~---~~~eD~dl~~r~~~~G~~~~~~~~~~~~~~~--~~~~~~~~---~q~~r 223 (236)
T cd06435 155 A-IIQHGTMCLIRRSAL--DDVGGWDEW---CITEDSELGLRMHEAGYIGVYVAQSYGHGLI--PDTFEAFK---KQRFR 223 (236)
T ss_pred c-eEEecceEEEEHHHH--HHhCCCCCc---cccchHHHHHHHHHCCcEEEEcchhhccCcC--cccHHHHH---HHHHH
Confidence 1 256788999999999 779999863 4689999999888888999988877665433 66888887 66663
No 19
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.2e-26 Score=246.19 Aligned_cols=224 Identities=18% Similarity=0.202 Sum_probs=172.7
Q ss_pred CCcEEEEeeccCCch-HHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHH
Q 010062 83 LPRVTVVMPLKGFGE-HNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIH 161 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~-~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~ 161 (519)
.|+|||+||+|||++ .+++|++|+.+|||| ++|+++|||+++|++.+++++...+++. +++++.. ....++|.+
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp-~~evivv~d~~~d~~~~~~~~~~~~~~~--~~~~~~~--~~~~~gK~~ 127 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYP-RYEVIVVDDGSTDETYEILEELGAEYGP--NFRVIYP--EKKNGGKAG 127 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCC-CceEEEECCCCChhHHHHHHHHHhhcCc--ceEEEec--cccCccchH
Confidence 589999999999999 999999999999999 7999999999999999999999998852 4666532 235667999
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCC---CChhhHHH-Hhhcccc---ccc
Q 010062 162 NQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPS---GSLGSYCI-YEYHMPC---SMG 234 (519)
Q Consensus 162 nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~---~~~~~~~~-~~~~~~~---~~~ 234 (519)
|++.|+..+ ++|+|+++|||+.++||+|.+++..|++ +..+++++.+..... .++..+.. .++.... ...
T Consensus 128 al~~~l~~~--~~d~V~~~DaD~~~~~d~l~~~~~~f~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (439)
T COG1215 128 ALNNGLKRA--KGDVVVILDADTVPEPDALRELVSPFED-PPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRA 204 (439)
T ss_pred HHHHHHhhc--CCCEEEEEcCCCCCChhHHHHHHhhhcC-CCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhh
Confidence 999999999 6999999999999999999999999996 666666664432221 23333322 1221111 011
Q ss_pred cccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHHHHh
Q 010062 235 FATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYWNYL 314 (519)
Q Consensus 235 ~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (519)
....+...+++|.++++||+++ ++.|+++.. .++||.+++.+++..|+++.+.+.++..... +++++.++
T Consensus 205 ~~~~g~~~~~~G~~~~~rr~aL--~~~g~~~~~---~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~--p~t~~~~~--- 274 (439)
T COG1215 205 ASKGGLISFLSGSSSAFRRSAL--EEVGGWLED---TITEDADLTLRLHLRGYRVVYVPEAIVWTEA--PETLKELW--- 274 (439)
T ss_pred hhhcCCeEEEcceeeeEEHHHH--HHhCCCCCC---ceeccHHHHHHHHHCCCeEEEeecceEeeeC--cccHHHHH---
Confidence 1112334588999999999999 778876653 7899999998888899999988888665543 67888888
Q ss_pred hhhHHHHHhh
Q 010062 315 RKQTFVLESY 324 (519)
Q Consensus 315 ~rq~~~~~~y 324 (519)
+++.||.+..
T Consensus 275 ~Qr~RW~~g~ 284 (439)
T COG1215 275 RQRLRWARGG 284 (439)
T ss_pred HHHHHHHccc
Confidence 6677666643
No 20
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=1e-23 Score=232.68 Aligned_cols=202 Identities=8% Similarity=-0.062 Sum_probs=148.3
Q ss_pred CCCCCCcEEEEeeccCCchHHHHHHHHHH-hccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcc
Q 010062 79 NQIKLPRVTVVMPLKGFGEHNLLNWRSQV-TSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCS 157 (519)
Q Consensus 79 ~~~~~P~VSVIIP~~ne~~~L~~~L~Sl~-~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~ 157 (519)
+....|+|||+||+|||+..+.+++++++ +|||| ++||++++|.+||.|.++++++++++| +++++...+ .+.+
T Consensus 58 ~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP-~~eI~vi~~~nD~~T~~~~~~l~~~~p---~~~~v~~~~-~g~~ 132 (727)
T PRK11234 58 YKPDEKPLAIMVPAWNETGVIGNMAELAATTLDYE-NYHIFVGTYPNDPATQADVDAVCARFP---NVHKVVCAR-PGPT 132 (727)
T ss_pred ccCCCCCEEEEEecCcchhhHHHHHHHHHHhCCCC-CeEEEEEecCCChhHHHHHHHHHHHCC---CcEEEEeCC-CCCC
Confidence 44456899999999999999999999987 78999 799999999888889999999999998 466666555 3567
Q ss_pred hhHHHHHHHHHhc-------cCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhh---HHH-Hh
Q 010062 158 QKIHNQLVGVENM-------HKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGS---YCI-YE 226 (519)
Q Consensus 158 ~K~~nl~~gl~~a-------~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~---~~~-~~ 226 (519)
+|++|||.+++++ +.+.+++++.|||+.++||+|+ +++.+.+ +. ++|++..... .+++.+ ... .+
T Consensus 133 gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~-~~-~~VQ~p~~p~-~~~~~~~~~~~~~~E 208 (727)
T PRK11234 133 SKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVE-RK-DLIQIPVYPF-EREWTHFTSGTYIDE 208 (727)
T ss_pred CHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcC-CC-CeEeecccCC-CccHHHHHHHHHHHH
Confidence 8999999999987 3345788999999999999998 6788874 65 8998843321 222222 111 22
Q ss_pred hcc---cccccccc-CCCcccccccchhc-cH--hhhcccccc-CcccCCCCCcccHHHHHHHHHhCCCcEEecC
Q 010062 227 YHM---PCSMGFAT-GGKTFFLWGGCMMM-HA--DDFRLDRYG-VVSGLRDGGYSDDMTLAALAGAHNRLITSPP 293 (519)
Q Consensus 227 ~~~---~~~~~~~~-~~~~~~~~G~~~~~-Rr--~~~~~~~~G-g~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~ 293 (519)
|.. ....+... ++. ..+.|.+|+| || +++ .+.| |+ .+..+.++||++++.++++.|+++.+.|
T Consensus 209 Fa~~~~~~~~~~~~lgg~-~~l~G~~~af~Rr~l~al--~~~ggg~-~~~~~~lTED~dlg~rL~~~G~~v~f~~ 279 (727)
T PRK11234 209 FAELHGKDVPVREALAGQ-VPSAGVGTCFSRRAVTAL--LEDGDGI-AFDVQSLTEDYDIGFRLKEKGMREIFVR 279 (727)
T ss_pred HHHHhhhhhHHHHHcCCC-cccCCceEEEecccHHHH--HHhcCCC-CcCCCcchHHHHHHHHHHHCCCEEEEcc
Confidence 221 11122222 333 3677889999 77 456 4455 43 3444589999999988888888888776
No 21
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.94 E-value=1.4e-25 Score=216.04 Aligned_cols=217 Identities=16% Similarity=0.116 Sum_probs=152.8
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCCC--eEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGGP--LEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLV 165 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~~--~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~ 165 (519)
||||+||+++.+.+||+|++.|+|| + +|||+|||+|+|.|.++++ ...+.+.. +++++.... .+..||..++|.
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~-~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~-~v~~~~~~~-~~~~g~~~a~n~ 76 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYP-KEKFEVILVDDHSTDGTVQILE-FAAAKPNF-QLKILNNSR-VSISGKKNALTT 76 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCC-CCceEEEEEcCCCCcChHHHHH-HHHhCCCc-ceEEeeccC-cccchhHHHHHH
Confidence 6999999999999999999999999 5 9999999999999999887 44444433 677766554 345678899999
Q ss_pred HHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHH-Hhhc--cccccccccCCCcc
Q 010062 166 GVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCI-YEYH--MPCSMGFATGGKTF 242 (519)
Q Consensus 166 gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~ 242 (519)
|++++ ++|+++++|+|+.++|++|+++++.+++ ++.+++++.....+..++..... ..+. ..........+...
T Consensus 77 g~~~~--~~d~i~~~D~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (229)
T cd04192 77 AIKAA--KGDWIVTTDADCVVPSNWLLTFVAFIQK-EQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPF 153 (229)
T ss_pred HHHHh--cCCEEEEECCCcccCHHHHHHHHHHhhc-CCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCcc
Confidence 99998 7899999999999999999999999986 66667776333333333332211 1111 00000111111223
Q ss_pred cccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCC-cEEec--CceeeeccCCCCCCHHHHHHHhhhhHH
Q 010062 243 FLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNR-LITSP--PVAVFPHPLASDLSFGRYWNYLRKQTF 319 (519)
Q Consensus 243 ~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~-~v~~~--~~~~~~~~~~~~~~~~~~~~~~~rq~~ 319 (519)
...|++|++||++| +++|||++... ...||.+++.++.+.|+ ++.+. +...+.+. .+.+++.++ +++.+
T Consensus 154 ~~~g~~~~~rr~~~--~~~ggf~~~~~-~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~---~q~~R 225 (229)
T cd04192 154 MCNGANMAYRKEAF--FEVGGFEGNDH-IASGDDELLLAKVASKYPKVAYLKNPEALVTTQ--PVTSWKELL---NQRKR 225 (229)
T ss_pred ccccceEEEEHHHH--HHhcCCccccc-cccCCHHHHHHHHHhCCCCEEEeeCcchheecC--CchhHHHHH---HHHHH
Confidence 56789999999999 77999987543 56799999865555555 56543 33433332 356788887 66553
No 22
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.93 E-value=2.1e-24 Score=211.63 Aligned_cols=220 Identities=15% Similarity=0.152 Sum_probs=159.4
Q ss_pred CCCCCCcEEEEeeccCCchHHHHHHHHHHhccCCCC-eEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcc
Q 010062 79 NQIKLPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGP-LEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCS 157 (519)
Q Consensus 79 ~~~~~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~-~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~ 157 (519)
+....|++|||||+|||++.+.+||+|+.+|+||.+ +|+|+|||+|+|+|.++++++..+ +++++..+++.
T Consensus 24 ~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-----~v~~i~~~~~~--- 95 (251)
T cd06439 24 DPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK-----GVKLLRFPERR--- 95 (251)
T ss_pred CCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC-----cEEEEEcCCCC---
Confidence 334578999999999999999999999999999843 899999999999999988886554 47777765443
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCC--hhhHHHHhhcccccccc
Q 010062 158 QKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGS--LGSYCIYEYHMPCSMGF 235 (519)
Q Consensus 158 ~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~--~~~~~~~~~~~~~~~~~ 235 (519)
||.+++|.|++++ ++|+++|+|+|+.++|++|+++++.++ +++++++++......+++ ........+........
T Consensus 96 g~~~a~n~gi~~a--~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (251)
T cd06439 96 GKAAALNRALALA--TGEIVVFTDANALLDPDALRLLVRHFA-DPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAE 172 (251)
T ss_pred ChHHHHHHHHHHc--CCCEEEEEccccCcCHHHHHHHHHHhc-CCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHH
Confidence 5888999999999 789999999999999999999999997 589999998544332221 10000000100000000
Q ss_pred ccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHHHHhh
Q 010062 236 ATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYWNYLR 315 (519)
Q Consensus 236 ~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (519)
...+......|+++++||+++ + +++. ....||.+++.++.+.|+++.+.|.....+.. +.++++++ +
T Consensus 173 ~~~~~~~~~~g~~~~~rr~~~--~---~~~~---~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~~~--~~~~~~~~---~ 239 (251)
T cd06439 173 SRLGSTVGANGAIYAIRRELF--R---PLPA---DTINDDFVLPLRIARQGYRVVYEPDAVAYEEV--AEDGSEEF---R 239 (251)
T ss_pred HhcCCeeeecchHHHhHHHHh--c---CCCc---ccchhHHHHHHHHHHcCCeEEeccccEEEEeC--cccHHHHH---H
Confidence 001112356688899999999 4 2332 25679999998888888888888877776654 45677777 7
Q ss_pred hhHHHHH
Q 010062 316 KQTFVLE 322 (519)
Q Consensus 316 rq~~~~~ 322 (519)
|+.++.+
T Consensus 240 ~~~r~~~ 246 (251)
T cd06439 240 RRVRIAA 246 (251)
T ss_pred HHHHHHh
Confidence 7774443
No 23
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.92 E-value=2.8e-24 Score=208.37 Aligned_cols=216 Identities=15% Similarity=0.143 Sum_probs=154.7
Q ss_pred cEEEEeeccCCc-hHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHH
Q 010062 85 RVTVVMPLKGFG-EHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQ 163 (519)
Q Consensus 85 ~VSVIIP~~ne~-~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl 163 (519)
.||||||+|||+ +.+.+||+|+.+|+ | +|+|||||+|+|++.+.+++.. +++ .++++..+ ..||.+++
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~-~--~eiivvdd~s~d~~~~~l~~~~-~~~---~~~v~~~~----~~g~~~a~ 69 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK-P--LEIIVVTDGDDEPYLSILSQTV-KYG---GIFVITVP----HPGKRRAL 69 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC-C--CEEEEEeCCCChHHHHHHHhhc-cCC---cEEEEecC----CCChHHHH
Confidence 489999999999 99999999999998 4 7999999999999988764422 222 45555432 34689999
Q ss_pred HHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCC-CChhhHHH---Hhhcc-ccccccccC
Q 010062 164 LVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPS-GSLGSYCI---YEYHM-PCSMGFATG 238 (519)
Q Consensus 164 ~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~-~~~~~~~~---~~~~~-~~~~~~~~~ 238 (519)
+.|++.+ ++|+|+|+|+|+.++|++|+++++.++ +|++++|++....... .+...... ..... .........
T Consensus 70 n~g~~~a--~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (235)
T cd06434 70 AEGIRHV--TTDIVVLLDSDTVWPPNALPEMLKPFE-DPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYD 146 (235)
T ss_pred HHHHHHh--CCCEEEEECCCceeChhHHHHHHHhcc-CCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999 799999999999999999999999998 6999999984333322 23322211 01000 000011112
Q ss_pred CCcccccccchhccHhhhccccccCcccC----C---CCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHH
Q 010062 239 GKTFFLWGGCMMMHADDFRLDRYGVVSGL----R---DGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYW 311 (519)
Q Consensus 239 ~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~----~---~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 311 (519)
+...++.|+++++||+++ ++.++.+.. . ....+||.+++.++++.|+++.+.+.....+. .+.++++|+
T Consensus 147 ~~~~~~~G~~~~~rr~~l--~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~ 222 (235)
T cd06434 147 GGVPCLSGRTAAYRTEIL--KDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTE--TPENYKKFL 222 (235)
T ss_pred CCEEEccCcHHHHHHHHH--hhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEEE--cchhHHHHH
Confidence 223466799999999999 556554432 0 12567999999888888888888777766654 356888887
Q ss_pred HHhhhhHHHH
Q 010062 312 NYLRKQTFVL 321 (519)
Q Consensus 312 ~~~~rq~~~~ 321 (519)
+++.+|.
T Consensus 223 ---~q~~Rw~ 229 (235)
T cd06434 223 ---KQQLRWS 229 (235)
T ss_pred ---HHhhhhh
Confidence 7777443
No 24
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.92 E-value=1.4e-23 Score=204.76 Aligned_cols=217 Identities=10% Similarity=-0.009 Sum_probs=160.9
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCC-CCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHH
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYG-GPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQ 163 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp-~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl 163 (519)
++|||||+||+++.+.++|+|+.+|+|| .++|+|+|||+|+|++.+.++++.++++ .++++..+. +++..++
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~---~v~~i~~~~----~~~~~a~ 73 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDP---RIRLIDNPK----RIQSAGL 73 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCC---eEEEEeCCC----CCchHHH
Confidence 4899999999999999999999999997 4799999999999999999999887755 577776532 2366789
Q ss_pred HHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhcc--c-ccccccc--C
Q 010062 164 LVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYHM--P-CSMGFAT--G 238 (519)
Q Consensus 164 ~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~--~ 238 (519)
|.|++.+ ++|+++|+|+|+.++|++|+++++.+++ ++.+++++.......+............ . ....+.. .
T Consensus 74 N~g~~~a--~~d~v~~lD~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (249)
T cd02525 74 NIGIRNS--RGDIIIRVDAHAVYPKDYILELVEALKR-TGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAV 150 (249)
T ss_pred HHHHHHh--CCCEEEEECCCccCCHHHHHHHHHHHhc-CCCCEEecceecCCCChHHHHHHHHhhchhccCCcccccccc
Confidence 9999999 7899999999999999999999999875 7888888744333332221111100000 0 0000110 1
Q ss_pred CCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHHHHhhhhH
Q 010062 239 GKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYWNYLRKQT 318 (519)
Q Consensus 239 ~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~rq~ 318 (519)
.......|+++++||+++ ++.|++++.. ...||.+++.++.+.|.++.+.|...+.|.. +.+++.++ +++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~--~~~g~~~~~~--~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~--~~s~~~~~---~~~~ 221 (249)
T cd02525 151 KIGYVDTVHHGAYRREVF--EKVGGFDESL--VRNEDAELNYRLRKAGYKIWLSPDIRVYYYP--RSTLKKLA---RQYF 221 (249)
T ss_pred ccccccccccceEEHHHH--HHhCCCCccc--CccchhHHHHHHHHcCcEEEEcCCeEEEEcC--CCCHHHHH---HHHH
Confidence 101256788999999999 7799988753 4579999998888888889988888777754 45777776 5555
Q ss_pred HH
Q 010062 319 FV 320 (519)
Q Consensus 319 ~~ 320 (519)
++
T Consensus 222 r~ 223 (249)
T cd02525 222 RY 223 (249)
T ss_pred HH
Confidence 33
No 25
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.91 E-value=1.9e-24 Score=200.57 Aligned_cols=165 Identities=25% Similarity=0.438 Sum_probs=135.8
Q ss_pred ceEEEEcCCCCCcchhHHHHHHHHHh-ccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhH
Q 010062 144 DAKVVVAGLSTTCSQKIHNQLVGVEN-MHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSY 222 (519)
Q Consensus 144 ~v~vv~~~~~~~~~~K~~nl~~gl~~-a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~ 222 (519)
+ +++..+.+.++|+|++||..++++ + ++|+++++|||+.++||+|++|++++++ |++|+|+++++..+.+++++.
T Consensus 4 ~-~lvv~~~~~g~N~Kv~nL~~~~~~~a--~~d~~~~~DsDi~v~p~~L~~lv~~l~~-p~vglVt~~~~~~~~~~~~~~ 79 (175)
T PF13506_consen 4 D-RLVVGGPPRGCNPKVNNLAQGLEAGA--KYDYLVISDSDIRVPPDYLRELVAPLAD-PGVGLVTGLPRGVPARGFWSR 79 (175)
T ss_pred C-EEEECCCCCCCChHHHHHHHHHHhhC--CCCEEEEECCCeeECHHHHHHHHHHHhC-CCCcEEEecccccCCcCHHHH
Confidence 5 688999999999999999999998 7 7899999999999999999999999985 999999998888888888877
Q ss_pred HHHhhc---cccccccccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeec
Q 010062 223 CIYEYH---MPCSMGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPH 299 (519)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~ 299 (519)
+...+. ...... ..+ ..+++|++|++||++| +++||++.+.+ .++||+.+++.+++.|+++...+..+.+.
T Consensus 80 l~~~~~~~~~~~~~a--~~~-~~~~~G~~m~~rr~~L--~~~GG~~~l~~-~ladD~~l~~~~~~~G~~v~~~~~~v~~~ 153 (175)
T PF13506_consen 80 LEAAFFNFLPGVLQA--LGG-APFAWGGSMAFRREAL--EEIGGFEALAD-YLADDYALGRRLRARGYRVVLSPYPVVQT 153 (175)
T ss_pred HHHHHHhHHHHHHHH--hcC-CCceecceeeeEHHHH--HHcccHHHHhh-hhhHHHHHHHHHHHCCCeEEEcchheeec
Confidence 542222 111111 223 3599999999999999 88999999986 99999999999999999999998765554
Q ss_pred cCCC--CCCHHHHHHHhhhhHHHH
Q 010062 300 PLAS--DLSFGRYWNYLRKQTFVL 321 (519)
Q Consensus 300 ~~~~--~~~~~~~~~~~~rq~~~~ 321 (519)
..+. ..++++++ +||++|.
T Consensus 154 ~~~~~~~~s~~~~~---~r~~RW~ 174 (175)
T PF13506_consen 154 SVPRTLEDSFRDFF---RRQLRWA 174 (175)
T ss_pred ccCccccccHHHHH---HHHHhhc
Confidence 3321 24788888 9999554
No 26
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.91 E-value=8.6e-24 Score=213.44 Aligned_cols=205 Identities=13% Similarity=0.139 Sum_probs=144.0
Q ss_pred EEEeeccCCc-hHHHHHHHHHHhccCCC-CeEEEEEECCCCCcHHHHHHHHH-hhcCCCCceEEEEcCCCCCcchhHHHH
Q 010062 87 TVVMPLKGFG-EHNLLNWRSQVTSLYGG-PLEFLFVVESKEDPAYHSVLRLL-QEFKDDVDAKVVVAGLSTTCSQKIHNQ 163 (519)
Q Consensus 87 SVIIP~~ne~-~~L~~~L~Sl~~q~yp~-~~eiIvV~d~s~D~t~~i~~~l~-~~~~~~~~v~vv~~~~~~~~~~K~~nl 163 (519)
|||||+||++ +.|.+||+|+.+|+++. .+|||||||+|+|+|.+.+++.. .+... +++++..+.+. |...+.
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~--~v~vi~~~~n~---G~~~a~ 75 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLP--KVKVLRLKKRE---GLIRAR 75 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCC--cEEEEEcCCCC---CHHHHH
Confidence 7999999999 99999999999999873 26999999999999998876622 23222 68998876654 356778
Q ss_pred HHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCC-Chh-------hH------HHHhhcc
Q 010062 164 LVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSG-SLG-------SY------CIYEYHM 229 (519)
Q Consensus 164 ~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~-~~~-------~~------~~~~~~~ 229 (519)
|.|+++| +||||+|+|+|+.++|+||++|++.++++|.. ++++. ...... ++. .. ....+..
T Consensus 76 N~g~~~A--~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~-~v~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (299)
T cd02510 76 IAGARAA--TGDVLVFLDSHCEVNVGWLEPLLARIAENRKT-VVCPI-IDVIDADTFEYRGSSGDARGGFDWSLHFKWLP 151 (299)
T ss_pred HHHHHHc--cCCEEEEEeCCcccCccHHHHHHHHHHhCCCe-EEEee-eccccCCCeeEecCCCceeEEecccceecccc
Confidence 8999999 79999999999999999999999999876654 55541 111111 100 00 0000000
Q ss_pred c--cc--cccc-cCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCC
Q 010062 230 P--CS--MGFA-TGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLA 302 (519)
Q Consensus 230 ~--~~--~~~~-~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~ 302 (519)
. .. .... .........|+||++||++| +++|||++-......||.|++.++++.|+++...|.+.+.|...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~--~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 152 LPEEERRRESPTAPIRSPTMAGGLFAIDREWF--LELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCHHHhhhcCCCCCccCccccceeeEEEHHHH--HHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence 0 00 0000 00112356799999999999 88999987543223599999987777777777777776666543
No 27
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.91 E-value=1.4e-23 Score=198.59 Aligned_cols=197 Identities=15% Similarity=0.122 Sum_probs=143.8
Q ss_pred CcEEEEeeccCCc-hHHHHHHHHHHhccCCCCeEEEEEECCCCCcHH-HHHHHHHhhcCCCCceEEEEcCCCCCcchhHH
Q 010062 84 PRVTVVMPLKGFG-EHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAY-HSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIH 161 (519)
Q Consensus 84 P~VSVIIP~~ne~-~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~-~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~ 161 (519)
|++|||||+||++ +.+.+||+|+++|+|+ ++|+|+|||+|+|++. ++++++..+.+ +++++..+.+. ++..
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~-~~eiivvd~gs~d~~~~~~~~~~~~~~~---~~~~~~~~~~~---g~~~ 73 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYP-NWELCIADDASTDPEVKRVLKKYAAQDP---RIKVVFREENG---GISA 73 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCC-CeEEEEEeCCCCChHHHHHHHHHHhcCC---CEEEEEcccCC---CHHH
Confidence 5799999999999 9999999999999998 8999999999999765 45555555544 57776665443 5678
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhccccccccccCCCc
Q 010062 162 NQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKT 241 (519)
Q Consensus 162 nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (519)
++|.|++.+ ++||++++|+|+.++|++|+++++.++++|+++++.+.......... .....+........ ...
T Consensus 74 a~n~g~~~a--~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~-- 146 (202)
T cd04184 74 ATNSALELA--TGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGK--RSEPFFKPDWSPDL-LLS-- 146 (202)
T ss_pred HHHHHHHhh--cCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCC--EeccccCCCCCHHH-hhh--
Confidence 889999998 78999999999999999999999999657999999763322111110 00000000000000 000
Q ss_pred ccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeee
Q 010062 242 FFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFP 298 (519)
Q Consensus 242 ~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~ 298 (519)
....++++++||+++ +++|||++-. ...||++++.++++.|+++...|..++.
T Consensus 147 ~~~~~~~~~~~r~~~--~~iggf~~~~--~~~eD~~l~~rl~~~g~~~~~~~~~~~~ 199 (202)
T cd04184 147 QNYIGHLLVYRRSLV--RQVGGFREGF--EGAQDYDLVLRVSEHTDRIAHIPRVLYH 199 (202)
T ss_pred cCCccceEeEEHHHH--HHhCCCCcCc--ccchhHHHHHHHHhccceEEEccHhhhh
Confidence 133467788999999 7799998742 3579999998888888888877766554
No 28
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.91 E-value=6.9e-24 Score=207.87 Aligned_cols=202 Identities=17% Similarity=0.117 Sum_probs=140.6
Q ss_pred EEeeccCCc-hHHHHHHHHHHhccCC---------CCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcc
Q 010062 88 VVMPLKGFG-EHNLLNWRSQVTSLYG---------GPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCS 157 (519)
Q Consensus 88 VIIP~~ne~-~~L~~~L~Sl~~q~yp---------~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~ 157 (519)
||||+|||+ ..|.++|+|+++|+|| .++||+||+|+|+| +.+ ++ +.+
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d-----------~~~----------gk--~~~ 57 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK-----------KNR----------GK--RDS 57 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc-----------ccC----------cc--hHH
Confidence 799999997 7999999999999998 36999999999999 100 00 000
Q ss_pred hh--HHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCC-CChhhHHH-Hhhcccccc
Q 010062 158 QK--IHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPS-GSLGSYCI-YEYHMPCSM 233 (519)
Q Consensus 158 ~K--~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~-~~~~~~~~-~~~~~~~~~ 233 (519)
.+ .++++.++..+ ++|+++++|+|+.++|++|++++++|++||++|+|+|....... .++..... .++......
T Consensus 58 ~~~~~~~~~~~~~~a--~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~ 135 (244)
T cd04190 58 QLWFFNYFCRVLFPD--DPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWL 135 (244)
T ss_pred HHHHHHHHHHHhhcC--CCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhh
Confidence 01 13556777777 79999999999999999999999999778999999984333222 24444322 222211111
Q ss_pred c---cccCCCcccccccchhccHhhhccccccCcccC-----------C------CCCcccHHHHHHHHHhCCCcEEe--
Q 010062 234 G---FATGGKTFFLWGGCMMMHADDFRLDRYGVVSGL-----------R------DGGYSDDMTLAALAGAHNRLITS-- 291 (519)
Q Consensus 234 ~---~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~-----------~------~g~~~ED~~l~~~~~~~g~~v~~-- 291 (519)
. .+..+...++.|.++++|++++ ++.|+.... . ...++||.+++.++...|+++.+
T Consensus 136 ~~~~~s~~g~~~~~~G~~~~~R~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~~~ 213 (244)
T cd04190 136 DKAFESVFGFVTCLPGCFSMYRIEAL--KGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKYLY 213 (244)
T ss_pred cccHHHcCCceEECCCceEEEEehhh--cCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEEEE
Confidence 1 1112333467799999999999 556554321 0 01367999999877777778777
Q ss_pred cCceeeeccCCCCCCHHHHHHHhhhhHHHH
Q 010062 292 PPVAVFPHPLASDLSFGRYWNYLRKQTFVL 321 (519)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~rq~~~~ 321 (519)
.|.+++++.. +.+++.++ +|+.||.
T Consensus 214 ~~~a~~~~~~--p~s~~~~~---~QR~RW~ 238 (244)
T cd04190 214 VPGAVAETDV--PETFVELL---SQRRRWI 238 (244)
T ss_pred ecccEEEEEC--CCCHHHHH---HHhHhhh
Confidence 7777776544 66899998 7777433
No 29
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.91 E-value=1.7e-23 Score=197.96 Aligned_cols=194 Identities=19% Similarity=0.134 Sum_probs=142.8
Q ss_pred EEEeeccCCc--hHHHHHHHHHHhccCCCCeEEEEEECCC-CCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHH
Q 010062 87 TVVMPLKGFG--EHNLLNWRSQVTSLYGGPLEFLFVVESK-EDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQ 163 (519)
Q Consensus 87 SVIIP~~ne~--~~L~~~L~Sl~~q~yp~~~eiIvV~d~s-~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl 163 (519)
||+||+||++ +.+.+||+|+++|+|+ ++|+|||||+| +|.+.++++++.+++ +++++..+.+. |+..++
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~-~~eiiivdd~ss~d~t~~~~~~~~~~~----~i~~i~~~~n~---G~~~a~ 72 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLP-PDEVVLVKDGPVTQSLNEVLEEFKRKL----PLKVVPLEKNR---GLGKAL 72 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCC-CcEEEEEECCCCchhHHHHHHHHHhcC----CeEEEEcCccc---cHHHHH
Confidence 7999999998 4899999999999998 89999999988 777888888877764 36777765543 567788
Q ss_pred HHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCC--hhhHHHHhhccccccccccCCCc
Q 010062 164 LVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGS--LGSYCIYEYHMPCSMGFATGGKT 241 (519)
Q Consensus 164 ~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 241 (519)
|.|++++ +|||++|+|+|+.++|++|+++++.++++|+++++++........+ .......... .....+. ...
T Consensus 73 N~g~~~a--~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~- 147 (201)
T cd04195 73 NEGLKHC--TYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPTSH-DDILKFA-RRR- 147 (201)
T ss_pred HHHHHhc--CCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeeccccCCCCH-HHHHHHh-ccC-
Confidence 9999999 7999999999999999999999999988899999987332222111 1000000000 0000000 011
Q ss_pred ccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeee
Q 010062 242 FFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFP 298 (519)
Q Consensus 242 ~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~ 298 (519)
....++++++||+++ +++|++++. ...||+++..++.+.|.++...|...+.
T Consensus 148 ~~~~~~~~~~rr~~~--~~~g~~~~~---~~~eD~~~~~r~~~~g~~~~~~~~~~~~ 199 (201)
T cd04195 148 SPFNHPTVMFRKSKV--LAVGGYQDL---PLVEDYALWARMLANGARFANLPEILVK 199 (201)
T ss_pred CCCCChHHhhhHHHH--HHcCCcCCC---CCchHHHHHHHHHHcCCceecccHHHhh
Confidence 133467899999999 779999864 5789999998877778788877665443
No 30
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.91 E-value=1.8e-22 Score=197.68 Aligned_cols=203 Identities=14% Similarity=0.105 Sum_probs=150.6
Q ss_pred CCCcEEEEeeccCCchHHHHHHHHHHhc--cCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchh
Q 010062 82 KLPRVTVVMPLKGFGEHNLLNWRSQVTS--LYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQK 159 (519)
Q Consensus 82 ~~P~VSVIIP~~ne~~~L~~~L~Sl~~q--~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K 159 (519)
..|+||||||+|||++.+.++++++.++ +++ ++|||+|||+|+|.|.++++++.++++.. .++++....+. ||
T Consensus 7 ~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~-~~eiivvDdgS~D~t~~i~~~~~~~~~~~-~v~~~~~~~n~---G~ 81 (243)
T PLN02726 7 GAMKYSIIVPTYNERLNIALIVYLIFKALQDVK-DFEIIVVDDGSPDGTQDVVKQLQKVYGED-RILLRPRPGKL---GL 81 (243)
T ss_pred CCceEEEEEccCCchhhHHHHHHHHHHHhccCC-CeEEEEEeCCCCCCHHHHHHHHHHhcCCC-cEEEEecCCCC---CH
Confidence 3678999999999999999999998764 444 79999999999999999999998887653 57776655443 47
Q ss_pred HHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCC--C--hhhHHH-Hhhcc--ccc
Q 010062 160 IHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSG--S--LGSYCI-YEYHM--PCS 232 (519)
Q Consensus 160 ~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~--~--~~~~~~-~~~~~--~~~ 232 (519)
..+++.|++.+ +||+++++|+|+.++|++|.++++.+++ +++++|.|.+.....+ + +..... ..+.. ...
T Consensus 82 ~~a~n~g~~~a--~g~~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 158 (243)
T PLN02726 82 GTAYIHGLKHA--SGDFVVIMDADLSHHPKYLPSFIKKQRE-TGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTL 158 (243)
T ss_pred HHHHHHHHHHc--CCCEEEEEcCCCCCCHHHHHHHHHHHHh-cCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHH
Confidence 77889999999 7999999999999999999999999975 7889999854332111 1 111111 00000 001
Q ss_pred cccccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeecc
Q 010062 233 MGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHP 300 (519)
Q Consensus 233 ~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~ 300 (519)
.+ .+. ....|+++++||+++ ++++..... .++.+|+|+..++...|+++...|.....+.
T Consensus 159 ~~---~~~-~d~~g~~~~~rr~~~--~~i~~~~~~--~~~~~~~el~~~~~~~g~~i~~vp~~~~~r~ 218 (243)
T PLN02726 159 LW---PGV-SDLTGSFRLYKRSAL--EDLVSSVVS--KGYVFQMEIIVRASRKGYRIEEVPITFVDRV 218 (243)
T ss_pred hC---CCC-CcCCCcccceeHHHH--HHHHhhccC--CCcEEehHHHHHHHHcCCcEEEeCcEEeCCC
Confidence 11 112 246689999999999 667644332 3678899999888888888888888766654
No 31
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.90 E-value=2e-20 Score=204.24 Aligned_cols=205 Identities=9% Similarity=-0.080 Sum_probs=142.8
Q ss_pred CCCCCCcEEEEeeccCCchHHHHHHHHHH-hccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcc
Q 010062 79 NQIKLPRVTVVMPLKGFGEHNLLNWRSQV-TSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCS 157 (519)
Q Consensus 79 ~~~~~P~VSVIIP~~ne~~~L~~~L~Sl~-~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~ 157 (519)
+....|++||+||+|||++.+.+++++++ +++|| ++||+++.+.+|++|.+.++++..++| +++++..++ .+..
T Consensus 66 ~~~~~~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp-~~~I~v~~~~nD~~T~~~~~~~~~~~p---~~~~v~~~~-~gp~ 140 (703)
T PRK15489 66 RERDEQPLAIMVPAWKEYDVIAKMIENMLATLDYR-RYVIFVGTYPNDAETITEVERMRRRYK---RLVRVEVPH-DGPT 140 (703)
T ss_pred cccCCCceEEEEeCCCcHHHHHHHHHHHHhcCCCC-CeEEEEEecCCCccHHHHHHHHhccCC---cEEEEEcCC-CCCC
Confidence 34456799999999999999999999986 78999 899988776666688899999988887 577777643 4677
Q ss_pred hhHHHHHHHHHhc-------cCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc--ccCCCCChhhHHH-Hhh
Q 010062 158 QKIHNQLVGVENM-------HKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYP--LDLPSGSLGSYCI-YEY 227 (519)
Q Consensus 158 ~K~~nl~~gl~~a-------~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~--~~~~~~~~~~~~~-~~~ 227 (519)
+|..+||.+++.+ +.+.+.+++.|||+.++|+.|+.+ +.+..++ +++++.. ...+..++.+... .+|
T Consensus 141 gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~--~~iQ~pV~~~~~~~~~~l~~~~~~Ef 217 (703)
T PRK15489 141 CKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRK--DLVQLPVLSLERKWYEWVAGTYMDEF 217 (703)
T ss_pred CHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCc--ceeeeeeccCCCccccHHHHHHHHHH
Confidence 8999999999875 112234999999999999999887 5554334 5677621 2223335655422 122
Q ss_pred c---cccccccccCCCcccccccchhccHhhhcc-ccccCcccCCCCCcccHHHHHHHHHhCCCcEEe
Q 010062 228 H---MPCSMGFATGGKTFFLWGGCMMMHADDFRL-DRYGVVSGLRDGGYSDDMTLAALAGAHNRLITS 291 (519)
Q Consensus 228 ~---~~~~~~~~~~~~~~~~~G~~~~~Rr~~~~~-~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~ 291 (519)
. ......+...+..-...|-+++|||+++++ .+.||.+.|....++||+|++.++.+.|+++.+
T Consensus 218 a~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~l~~~gg~~~~n~~sLTED~Dlg~RL~~~G~r~~f 285 (703)
T PRK15489 218 AEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLALMKERGNQPFNTSSLTEDYDFSFRLAELGMQEIF 285 (703)
T ss_pred HHHhhhHHHHHHHcCCceeccCcceeeeHHHHHHHHHhcCCCCCCCCCchHhHHHHHHHHHCCCceEE
Confidence 1 111222222222213345588999999832 123666666655889999999877777777766
No 32
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.89 E-value=4.2e-22 Score=191.54 Aligned_cols=205 Identities=13% Similarity=0.128 Sum_probs=141.3
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCC-CCcchhHHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLS-TTCSQKIHNQLVG 166 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~-~~~~~K~~nl~~g 166 (519)
||||+||+++.|.+||+|++.|+||.++|+|||||+|+|.|.++++++.++++.. +++++....+ ....|...+.|.|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~a~N~g 79 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDS-GVIVLVGSHNSPSPKGVGYAKNQA 79 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCccc-CeEEEEecccCCCCccHHHHHHHH
Confidence 6999999999999999999999998559999999999999999999988887654 6777654332 2234567788899
Q ss_pred HHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHH--hhccccccc--cccCCCcc
Q 010062 167 VENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIY--EYHMPCSMG--FATGGKTF 242 (519)
Q Consensus 167 l~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~ 242 (519)
++.+ +|||++|+|+|+.++|++|.+++..+.+++. .++++.....+.+........ ......... +...+.
T Consensus 80 ~~~a--~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 154 (219)
T cd06913 80 IAQS--SGRYLCFLDSDDVMMPQRIRLQYEAALQHPN-SIIGCQVRRIPEDSTERYTRWINTLTREQLLTQVYTSHGP-- 154 (219)
T ss_pred HHhc--CCCEEEEECCCccCChhHHHHHHHHHHhCCC-cEEEEEEEecCcccchhhHHHHHhcCHHHHHHHHHhhcCC--
Confidence 9999 7999999999999999999999988876564 445442222222211100000 000000000 000111
Q ss_pred cccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccC
Q 010062 243 FLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPL 301 (519)
Q Consensus 243 ~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~ 301 (519)
......+++||+++ +++|||++-.. ...||+++..++.+.|.+++..+...+.++.
T Consensus 155 ~~~~~~~~~rr~~~--~~~g~f~~~~~-~~~eD~~l~~r~~~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 155 TVIMPTWFCSREWF--SHVGPFDEGGK-GVPEDLLFFYEHLRKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred ccccccceeehhHH--hhcCCccchhc-cchhHHHHHHHHHHcCCceEEEcceeeeeee
Confidence 11223467999999 77999986432 5679999997666666677776666665543
No 33
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.89 E-value=7.2e-22 Score=189.93 Aligned_cols=210 Identities=14% Similarity=0.080 Sum_probs=149.9
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
||||+||+++.|.+||+|+.+|.+..++|+|+|||+|+|+|.++++++.++++ .++++....+. |+.+++|.|+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~---~i~~~~~~~n~---G~~~a~n~g~ 74 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP---RVRLIVRPGKR---GLGSAYIEGF 74 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC---ceEEEecCCCC---ChHHHHHHHH
Confidence 69999999999999999999999833799999999999999999999888776 56777765443 5778899999
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCC--Chhh--H-HHHhhccccccccccCCCcc
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSG--SLGS--Y-CIYEYHMPCSMGFATGGKTF 242 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~--~~~~--~-~~~~~~~~~~~~~~~~~~~~ 242 (519)
+.| ++|+++|+|+|+.++|++|..+++.+.+ ++.++|.|.+.....+ ++.. . ....... ........+. .
T Consensus 75 ~~a--~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~ 149 (224)
T cd06442 75 KAA--RGDVIVVMDADLSHPPEYIPELLEAQLE-GGADLVIGSRYVEGGGVEGWGLKRKLISRGANL-LARLLLGRKV-S 149 (224)
T ss_pred HHc--CCCEEEEEECCCCCCHHHHHHHHHHHhc-CCCCEEEEeeeecCCccCCCcHHHHHHHHHHHH-HHHHHcCCCC-C
Confidence 999 7899999999999999999999999764 6677777744332211 1111 1 1000000 0000001122 3
Q ss_pred cccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCC-CCCHHHHHH
Q 010062 243 FLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLAS-DLSFGRYWN 312 (519)
Q Consensus 243 ~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~ 312 (519)
.+.|+++++||+++ +++| +.....++.+|.++..++.+.|+++...|.....|..+. ..++++.++
T Consensus 150 ~~~~~~~~~~r~~~--~~ig--~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~~~~~~~~g~s~~~~~~~~~ 216 (224)
T cd06442 150 DPTSGFRAYRREVL--EKLI--DSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDREHGESKLGGKEIVE 216 (224)
T ss_pred CCCCccchhhHHHH--HHHh--hhccCCCcEEeHHHHHHHHHcCCeEEEeCeEEeccCCCcCceeHHHHHH
Confidence 56789999999999 6687 222223677888898777888888888887766554432 334455543
No 34
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.89 E-value=1.7e-22 Score=192.35 Aligned_cols=195 Identities=14% Similarity=0.040 Sum_probs=141.5
Q ss_pred EEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHH
Q 010062 87 TVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVG 166 (519)
Q Consensus 87 SVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~g 166 (519)
|||||+||+++.|.+||+|+++|+|| ++|+|||||+|+|+|.++++++..++|. .++++..+.+ .|+..|++.|
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~-~~eiiVvddgS~d~t~~~~~~~~~~~~~--~~~~~~~~~~---~G~~~~~n~g 74 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYK-NDELIISDDGSTDGTVEIIKEYIDKDPF--IIILIRNGKN---LGVARNFESL 74 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCC-CeEEEEEeCCCCCCcHHHHHHHHhcCCc--eEEEEeCCCC---ccHHHHHHHH
Confidence 69999999999999999999999999 8999999999999999999999888763 4566555543 3577888899
Q ss_pred HHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCC-CCChhhH-HHHhhccccccccccCCCcccc
Q 010062 167 VENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLP-SGSLGSY-CIYEYHMPCSMGFATGGKTFFL 244 (519)
Q Consensus 167 l~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 244 (519)
+..+ +|||++++|+|+.++|++|.++++.+.++++.+++++...... ++..... ......................
T Consensus 75 ~~~~--~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (214)
T cd04196 75 LQAA--DGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVV 152 (214)
T ss_pred HHhC--CCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCcc
Confidence 9988 7999999999999999999999999666788888887432221 1111111 0000000000000000011255
Q ss_pred cccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecC
Q 010062 245 WGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPP 293 (519)
Q Consensus 245 ~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~ 293 (519)
.|+++++||+++ +++|+++... ...||.++..++.++|...+.+.
T Consensus 153 ~~~~~~~r~~~~--~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~ 197 (214)
T cd04196 153 TGCTMAFNRELL--ELALPFPDAD--VIMHDWWLALLASAFGKVVFLDE 197 (214)
T ss_pred CCceeeEEHHHH--Hhhccccccc--cccchHHHHHHHHHcCceEEcch
Confidence 688999999999 7788887652 46799999877777765444443
No 35
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.87 E-value=8.1e-22 Score=184.35 Aligned_cols=174 Identities=14% Similarity=0.119 Sum_probs=123.1
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCC-CeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGG-PLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVG 166 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~-~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~g 166 (519)
||||+|||++.|.+||+|+.+|+||. ++|+|+|||+|+|.|.++++++ . .+++....+ ...+|.+++|.|
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~----~----~~~~~~~~~-~~~gk~~aln~g 71 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA----G----ATVLERHDP-ERRGKGYALDFG 71 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc----C----CeEEEeCCC-CCCCHHHHHHHH
Confidence 79999999999999999999999973 5999999999999998887653 1 223322212 234699999999
Q ss_pred HHhcc---CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccC-CCCChhhHHH-Hhhc--cc-cccccccC
Q 010062 167 VENMH---KDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDL-PSGSLGSYCI-YEYH--MP-CSMGFATG 238 (519)
Q Consensus 167 l~~a~---~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~-~~~~~~~~~~-~~~~--~~-~~~~~~~~ 238 (519)
++.+. .++|+++++|+|+.++|++|.++++.++++ .++|++..... +..++..+.. ..+. .. ...+....
T Consensus 72 ~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (183)
T cd06438 72 FRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAG--ARVVQAYYNSKNPDDSWITRLYAFAFLVFNRLRPLGRSNL 149 (183)
T ss_pred HHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhC--CCeeEEEEeeeCCccCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 98872 358999999999999999999999999753 45777744333 2335544322 1111 10 11111111
Q ss_pred CCcccccccchhccHhhhccccccCcccCCCCCcccHHHH
Q 010062 239 GKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTL 278 (519)
Q Consensus 239 ~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l 278 (519)
+....+.|+++++||+++ ++ ||++. ..+.||++|
T Consensus 150 ~~~~~~~G~~~~~rr~~l--~~-~g~~~---~~l~ED~~~ 183 (183)
T cd06438 150 GLSCQLGGTGMCFPWAVL--RQ-APWAA---HSLTEDLEF 183 (183)
T ss_pred CCCeeecCchhhhHHHHH--Hh-CCCCC---CCcccccCC
Confidence 222367899999999999 65 66654 378999874
No 36
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.87 E-value=3.1e-21 Score=182.89 Aligned_cols=174 Identities=14% Similarity=0.042 Sum_probs=136.1
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
||||+||+++.+.+||+|+.+|++| ++|+|+|||+|+|.|.++++++..++ +++++..+.+.| ...+++.|+
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~-~~eiiivD~~s~d~t~~~~~~~~~~~----~i~~~~~~~n~g---~~~~~n~~~ 72 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRP-PDHIIVIDNASTDGTAEWLTSLGDLD----NIVYLRLPENLG---GAGGFYEGV 72 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCC-CceEEEEECCCCcchHHHHHHhcCCC----ceEEEECccccc---hhhHHHHHH
Confidence 6999999999999999999999999 89999999999999999988876543 367777766554 333444555
Q ss_pred Hhc-cCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhccccccccccCCCcccccc
Q 010062 168 ENM-HKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKTFFLWG 246 (519)
Q Consensus 168 ~~a-~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 246 (519)
+.+ ..++|+++|+|+|+.++|++++++++.++ +++++++.+..... ++ .+
T Consensus 73 ~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~-~~---------------------------~~ 123 (202)
T cd04185 73 RRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD-KDNPQFLAPLVLDP-DG---------------------------SF 123 (202)
T ss_pred HHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh-cCCceEecceeEcC-CC---------------------------ce
Confidence 443 12689999999999999999999999998 58999887733221 11 13
Q ss_pred cchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCC
Q 010062 247 GCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLA 302 (519)
Q Consensus 247 ~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~ 302 (519)
+++++||+.+ +++|++++... .+.||.+++.++++.|.++ +.|.+.+.|...
T Consensus 124 ~~~~~~~~~~--~~~g~~~~~~~-~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~ 175 (202)
T cd04185 124 VGVLISRRVV--EKIGLPDKEFF-IWGDDTEYTLRASKAGPGI-YVPDAVVVHKTA 175 (202)
T ss_pred EEEEEeHHHH--HHhCCCChhhh-ccchHHHHHHHHHHcCCcE-EecceEEEEccc
Confidence 5678999999 77998876533 5679999999888889888 566666665543
No 37
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.87 E-value=2.8e-21 Score=181.64 Aligned_cols=194 Identities=13% Similarity=0.124 Sum_probs=140.7
Q ss_pred EEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHH
Q 010062 87 TVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVG 166 (519)
Q Consensus 87 SVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~g 166 (519)
|||||+||+++.+.+||+|+.+|+++ ++|||+|||+|+|.+.++++++..+ .+.+ ...++ .|+..++|.|
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~-~~evivvDd~s~d~~~~~~~~~~~~-----~~~~-~~~~~---~g~~~a~n~~ 70 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYP-NIEYIVIDGGSTDGTVDIIKKYEDK-----ITYW-ISEPD---KGIYDAMNKG 70 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCC-CceEEEEeCCCCccHHHHHHHhHhh-----cEEE-EecCC---cCHHHHHHHH
Confidence 69999999999999999999999998 7999999999999999988876543 1333 33332 3577888999
Q ss_pred HHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCC-ChhhHHHHhhccccccccccCCCccccc
Q 010062 167 VENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSG-SLGSYCIYEYHMPCSMGFATGGKTFFLW 245 (519)
Q Consensus 167 l~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (519)
++.+ ++||++++|+|+.+.|+++.+++..+.++++.+++.|.......+ ....... ........... .....
T Consensus 71 ~~~a--~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~ 143 (202)
T cd06433 71 IALA--TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRR----PPPFLDKFLLY-GMPIC 143 (202)
T ss_pred HHHc--CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCC----CcchhhhHHhh-cCccc
Confidence 9999 789999999999999999999997776679999998844332221 1110000 00000000011 12455
Q ss_pred ccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccC
Q 010062 246 GGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPL 301 (519)
Q Consensus 246 G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~ 301 (519)
++++++||+++ +++|++++.. .+.||.++..++.+.|+++...|...+.+..
T Consensus 144 ~~~~~~~~~~~--~~~~~f~~~~--~~~~D~~~~~r~~~~g~~~~~~~~~~~~~~~ 195 (202)
T cd06433 144 HQATFFRRSLF--EKYGGFDESY--RIAADYDLLLRLLLAGKIFKYLPEVLAAFRL 195 (202)
T ss_pred CcceEEEHHHH--HHhCCCchhh--CchhhHHHHHHHHHcCCceEecchhhhhhee
Confidence 77889999999 7799887642 4579999998777777778666666555443
No 38
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.87 E-value=1.2e-20 Score=181.06 Aligned_cols=184 Identities=16% Similarity=0.099 Sum_probs=131.5
Q ss_pred EEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHH
Q 010062 86 VTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLV 165 (519)
Q Consensus 86 VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~ 165 (519)
||||||+||+++.+.+||+|+++|+|+ ++|+|+|||+|+|++.+++++ + +++++..+ .++..++|.
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~-~~evivvdd~s~d~~~~~~~~-----~---~~~~~~~~-----~g~~~a~n~ 66 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPL-PLEIIVVDGGSTDGTVAIARS-----A---GVVVISSP-----KGRARQMNA 66 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCC-CcEEEEEeCCCCccHHHHHhc-----C---CeEEEeCC-----cCHHHHHHH
Confidence 699999999999999999999999996 899999999999999887665 2 45555432 246778889
Q ss_pred HHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhccccccccccCCCccccc
Q 010062 166 GVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKTFFLW 245 (519)
Q Consensus 166 gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (519)
|++.+ ++|+++++|+|+.++|+++++++..+.+ ++..+++........+...... ...... .....+ ....
T Consensus 67 g~~~a--~~~~i~~~D~D~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~--~~~~ 137 (221)
T cd02522 67 GAAAA--RGDWLLFLHADTRLPPDWDAAIIETLRA-DGAVAGAFRLRFDDPGPRLRLL--ELGANL--RSRLFG--LPYG 137 (221)
T ss_pred HHHhc--cCCEEEEEcCCCCCChhHHHHHHHHhhc-CCcEEEEEEeeecCCccchhhh--hhcccc--eecccC--CCcC
Confidence 99999 6899999999999999999999888875 5544443322222222111111 111000 000000 1222
Q ss_pred ccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeee
Q 010062 246 GGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFP 298 (519)
Q Consensus 246 G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~ 298 (519)
+.+|++||+++ +++|++++. .+.||++++.++.+.|+++..+ ..++.
T Consensus 138 ~~~~~~r~~~~--~~~G~fd~~---~~~ED~d~~~r~~~~G~~~~~~-~~~~~ 184 (221)
T cd02522 138 DQGLFIRRELF--EELGGFPEL---PLMEDVELVRRLRRRGRPALLP-SPVTT 184 (221)
T ss_pred CceEEEEHHHH--HHhCCCCcc---ccccHHHHHHHHHhCCCEEEcC-ceeee
Confidence 46899999999 779999875 3789999998888888888874 44443
No 39
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.86 E-value=2.5e-21 Score=182.57 Aligned_cols=177 Identities=15% Similarity=0.097 Sum_probs=129.4
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
||||+|||++.|.+||+|+.+|+ | ++|||+|||+|+|.|.++++ +...++ +++++....+....||..++|.|+
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~-~-~~eIivvdd~S~D~t~~~~~-~~~~~~---~v~~i~~~~~~~~~Gk~~aln~g~ 74 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNK-P-NFLVLVIDDASDDDTAGIVR-LAITDS---RVHLLRRHLPNARTGKGDALNAAY 74 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCC-C-CeEEEEEECCCCcCHHHHHh-heecCC---cEEEEeccCCcCCCCHHHHHHHHH
Confidence 79999999999999999999999 7 79999999999999999887 332222 678776543333447999999999
Q ss_pred HhccC---------CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccC-CCCChhhHHH-Hhhcccc---cc
Q 010062 168 ENMHK---------DSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDL-PSGSLGSYCI-YEYHMPC---SM 233 (519)
Q Consensus 168 ~~a~~---------~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~-~~~~~~~~~~-~~~~~~~---~~ 233 (519)
+.+.. ++|+|+++|+|+.++|++|+.+...++ +|+++++++..... ...++.++.. .++.... ..
T Consensus 75 ~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 153 (191)
T cd06436 75 DQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQS 153 (191)
T ss_pred HHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98731 248999999999999999999888886 69999998743332 2345544322 2222110 11
Q ss_pred ccccCCCcccccccchhccHhhhccccccCcccCCCCCcccH
Q 010062 234 GFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDD 275 (519)
Q Consensus 234 ~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED 275 (519)
.....+. ....|.++++||+++ +++||++.|.. .+.||
T Consensus 154 ~~~~~~~-~~~~G~~~~~r~~~l--~~vgg~~~~~~-~~~ED 191 (191)
T cd06436 154 LRALTGT-VGLGGNGQFMRLSAL--DGLIGEEPWSD-SLLED 191 (191)
T ss_pred HHHhcCc-EEECCeeEEEeHHHH--HHhhcCCCCch-hhcCC
Confidence 1111222 134577889999999 77999888865 77887
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.86 E-value=1.1e-20 Score=175.63 Aligned_cols=179 Identities=16% Similarity=0.131 Sum_probs=133.5
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
||||+||+++.+++||+|+.+|+|+ ++|+|+|||+|+|.+.++++++.+..+. +++.+... + ..-++..++|.|+
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~~~~~n~g~ 75 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSIL-PFEVIIADDGSTEETKELIEEFKSQFPI--PIKHVWQE-D-EGFRKAKIRNKAI 75 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCC-CCEEEEEeCCCchhHHHHHHHHHhhcCC--ceEEEEcC-C-cchhHHHHHHHHH
Confidence 6899999999999999999999998 8999999999999999999888775443 33333332 2 1225778899999
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhccccccccccCCCccccccc
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKTFFLWGG 247 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 247 (519)
+.+ ++|+++++|+|+.++|++|+++++.+. ++..++++ ......... .....|+
T Consensus 76 ~~a--~g~~i~~lD~D~~~~~~~l~~~~~~~~--~~~~v~g~-~~~~~~~~~---------------------~~~~~~~ 129 (182)
T cd06420 76 AAA--KGDYLIFIDGDCIPHPDFIADHIELAE--PGVFLSGS-RVLLNEKLT---------------------ERGIRGC 129 (182)
T ss_pred HHh--cCCEEEEEcCCcccCHHHHHHHHHHhC--CCcEEecc-eeecccccc---------------------eeEeccc
Confidence 999 799999999999999999999999883 66655544 322221110 0144578
Q ss_pred chhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCC-CcEEecCceeeec
Q 010062 248 CMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHN-RLITSPPVAVFPH 299 (519)
Q Consensus 248 ~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g-~~v~~~~~~~~~~ 299 (519)
+++++|+.+ .+.||+++...+...||++++.++++.| +.....+.+.+.|
T Consensus 130 ~~~~~r~~~--~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~~~~h 180 (182)
T cd06420 130 NMSFWKKDL--LAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVFH 180 (182)
T ss_pred eEEEEHHHH--HHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccceeee
Confidence 888999999 6689998754423469999997666666 5555554554443
No 41
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.86 E-value=2.8e-19 Score=182.78 Aligned_cols=203 Identities=15% Similarity=0.119 Sum_probs=144.3
Q ss_pred CCCCCcEEEEeeccCCchHHHHHHHHHHhc-------cCCCCeEEEEEECCCCCcHHHHHHHHHhhc--CCCCceEEEEc
Q 010062 80 QIKLPRVTVVMPLKGFGEHNLLNWRSQVTS-------LYGGPLEFLFVVESKEDPAYHSVLRLLQEF--KDDVDAKVVVA 150 (519)
Q Consensus 80 ~~~~P~VSVIIP~~ne~~~L~~~L~Sl~~q-------~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~--~~~~~v~vv~~ 150 (519)
....|.+|||||+|||++.|.++|+++.++ +++.++|+|+|||+|+|.|.++++++.+++ ++. +++++..
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~-~i~vi~~ 144 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNI-DIRLLSL 144 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCC-cEEEEEc
Confidence 345678999999999999999999998764 334469999999999999999999988775 332 6888877
Q ss_pred CCCCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHh--CCCeEEEEeccccCCCC------ChhhH
Q 010062 151 GLSTTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEK--NPEIFIQTGYPLDLPSG------SLGSY 222 (519)
Q Consensus 151 ~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~--dp~vg~V~g~~~~~~~~------~~~~~ 222 (519)
+.+. ||..+++.|++++ +||+++++|+|...+|+.+.++++.+++ ++++++|.|.+.....+ ++...
T Consensus 145 ~~N~---G~~~A~~~Gi~~a--~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~ 219 (333)
T PTZ00260 145 LRNK---GKGGAVRIGMLAS--RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRN 219 (333)
T ss_pred CCCC---ChHHHHHHHHHHc--cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHH
Confidence 6554 5888999999998 7999999999999999999999998864 47889999855432221 22211
Q ss_pred H-HHhhcc--ccccccccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCcee
Q 010062 223 C-IYEYHM--PCSMGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAV 296 (519)
Q Consensus 223 ~-~~~~~~--~~~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~ 296 (519)
. ...++. ....+.. . .-...+.-+++|+++++ + +.......+.-|.++...+++.|.++...|...
T Consensus 220 ~~~~~~~~l~~~~~~~~---i-~D~~~Gfk~~~r~~~~~--i--~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv~~ 288 (333)
T PTZ00260 220 ILMYGFHFIVNTICGTN---L-KDTQCGFKLFTRETARI--I--FPSLHLERWAFDIEIVMIAQKLNLPIAEVPVNW 288 (333)
T ss_pred HHHHHHHHHHHHHcCCC---c-ccCCCCeEEEeHHHHHH--H--hhhccccCccchHHHHHHHHHcCCCEEEEceee
Confidence 1 111111 1111111 1 12223455899999833 3 222222256678888888888888888888764
No 42
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.86 E-value=1.7e-20 Score=170.73 Aligned_cols=164 Identities=19% Similarity=0.230 Sum_probs=138.8
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
|+||+||+.+.+.++++|+.+|+++ ++|++++||+|+|++.+.+++.. + +++++..+.+. |+..+++.++
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~-~~~iiivdd~s~~~~~~~~~~~~---~---~~~~~~~~~~~---g~~~a~n~~~ 70 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYP-DFEVIVVDNASTDGSVELLRELF---P---EVRLIRNGENL---GFGAGNNQGI 70 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCC-CeEEEEEECCCCchHHHHHHHhC---C---CeEEEecCCCc---ChHHHhhHHH
Confidence 6899999999999999999999997 89999999999999888776532 2 46776655443 5778889999
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhccccccccccCCCccccccc
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKTFFLWGG 247 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 247 (519)
+.+ ++|+++|+|+|+.++|+++..+++.+.++++++++++. ..|+
T Consensus 71 ~~~--~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------------------~~~~ 115 (166)
T cd04186 71 REA--KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------------------------------VSGA 115 (166)
T ss_pred hhC--CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc---------------------------------Ccee
Confidence 999 78999999999999999999999988878999988873 4478
Q ss_pred chhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeec
Q 010062 248 CMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPH 299 (519)
Q Consensus 248 ~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~ 299 (519)
++++||+++ .++|+++.... ..+||.+++.++.+.|+++...|...+.|
T Consensus 116 ~~~~~~~~~--~~~~~~~~~~~-~~~eD~~~~~~~~~~g~~i~~~~~~~~~h 164 (166)
T cd04186 116 FLLVRREVF--EEVGGFDEDFF-LYYEDVDLCLRARLAGYRVLYVPQAVIYH 164 (166)
T ss_pred eEeeeHHHH--HHcCCCChhhh-ccccHHHHHHHHHHcCCeEEEccceEEEe
Confidence 999999999 66999987643 47899999987777888888888876655
No 43
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.85 E-value=5.8e-20 Score=182.95 Aligned_cols=196 Identities=9% Similarity=0.048 Sum_probs=129.7
Q ss_pred CCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHH
Q 010062 83 LPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHN 162 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~n 162 (519)
.|.||||||+||+++.+.+||+|+++|+|+ ++|+|||||+|+| .++++++.+++.+. +++++..+.+. |+..+
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~Qt~~-~~EiIVVDDgS~~--~~~~~~~~~~~~~~-ri~~i~~~~n~---G~~~a 76 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLRQDYS-NWEMIIVDDCSTS--WEQLQQYVTALNDP-RITYIHNDINS---GACAV 76 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHhCCCC-CeEEEEEECCCCC--HHHHHHHHHHcCCC-CEEEEECCCCC---CHHHH
Confidence 678999999999999999999999999999 8999999999985 45677777665443 78888776554 46778
Q ss_pred HHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhccccccccccCCCcc
Q 010062 163 QLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKTF 242 (519)
Q Consensus 163 l~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (519)
+|.|++.| +||||+|+|+|+.++|+.|+.+++.+++.++.+.+.+...................+......... ...
T Consensus 77 ~N~gi~~a--~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~ 153 (279)
T PRK10018 77 RNQAIMLA--QGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSPYSRRLF-YKR 153 (279)
T ss_pred HHHHHHHc--CCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccceeecCcccccccccCCCCCCCCCHHHH-HHh
Confidence 89999999 799999999999999999999999997656666665532111111000000000000000000000 001
Q ss_pred cccccchhccHhhhccccccCcccCCCCCcccHHHHH-HHHHhCCCcEEecC
Q 010062 243 FLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLA-ALAGAHNRLITSPP 293 (519)
Q Consensus 243 ~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~-~~~~~~g~~v~~~~ 293 (519)
...|+.++.++..+ .. +++++- -...||+++. +++.+++.....+.
T Consensus 154 n~ig~~~~~~~~~~--~~-~~fd~~--~~~~eDydlwlrl~~~~~~~~~~~~ 200 (279)
T PRK10018 154 NIIGNQVFTWAWRF--KE-CLFDTE--LKAAQDYDIFLRMVVEYGEPWKVEE 200 (279)
T ss_pred cCcCceeeehhhhh--hh-cccCCC--CCccccHHHHHHHHHhcCceEeecc
Confidence 33455555666666 33 456432 1568999999 56666665444443
No 44
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.85 E-value=1.6e-20 Score=191.74 Aligned_cols=204 Identities=13% Similarity=0.103 Sum_probs=137.0
Q ss_pred CCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHH
Q 010062 83 LPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHN 162 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~n 162 (519)
.|.||||||+||+++.|.+||+|+++|+|+ ++|+|+|||+|+|.|.++++++.++++ +++++.. ++. |...+
T Consensus 5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~-~~EIIiVdDgStD~t~~i~~~~~~~~~---~i~vi~~-~n~---G~~~a 76 (328)
T PRK10073 5 TPKLSIIIPLYNAGKDFRAFMESLIAQTWT-ALEIIIVNDGSTDNSVEIAKHYAENYP---HVRLLHQ-ANA---GVSVA 76 (328)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHhCCCC-CeEEEEEeCCCCccHHHHHHHHHhhCC---CEEEEEC-CCC---ChHHH
Confidence 578999999999999999999999999998 899999999999999999999988876 6787754 233 46778
Q ss_pred HHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc-cCCCCChhhHHH-Hh--hcccccccc---
Q 010062 163 QLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPL-DLPSGSLGSYCI-YE--YHMPCSMGF--- 235 (519)
Q Consensus 163 l~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~-~~~~~~~~~~~~-~~--~~~~~~~~~--- 235 (519)
.|.|++.| +||||+|+|+|+.++|++++.+++.+++ ++.+++.+... ....+....... .. .......+.
T Consensus 77 rN~gl~~a--~g~yi~flD~DD~~~p~~l~~l~~~~~~-~~~dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 153 (328)
T PRK10073 77 RNTGLAVA--TGKYVAFPDADDVVYPTMYETLMTMALE-DDLDVAQCNADWCFRDTGETWQSIPSDRLRSTGVLSGPDWL 153 (328)
T ss_pred HHHHHHhC--CCCEEEEECCCCccChhHHHHHHHHHHh-CCCCEEEEccEEEEeCCCccccccccccccccceechHHHH
Confidence 88999999 8999999999999999999999999875 55666654221 111110000000 00 000000000
Q ss_pred --ccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccC
Q 010062 236 --ATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPL 301 (519)
Q Consensus 236 --~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~ 301 (519)
............+.++||+.+ ++.|..-. .+...||..+...+...+.++.+.+...+.+..
T Consensus 154 ~~~l~~~~~~~~~~~~l~Rr~~l--~~~~~~f~--~~~~~eD~~~~~~~~~~~~~v~~~~~~ly~Yr~ 217 (328)
T PRK10073 154 RMALSSRRWTHVVWLGVYRRDFI--VKNNIKFE--PGLHHQDIPWTTEVMFNALRVRYTEQSLYKYYL 217 (328)
T ss_pred HHHHhhCCCCccHhHHHHHHHHH--HHcCCccC--CCCEeccHHHHHHHHHHCCEEEEECCCEEEEEe
Confidence 000000011123458999999 55664221 223459999985444445567766666665443
No 45
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.84 E-value=2.7e-20 Score=169.56 Aligned_cols=175 Identities=17% Similarity=0.136 Sum_probs=129.6
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
||||+||+++.+.+||+|+.+|+|+ ++|+++|||+|+|.+.+.+++...+.+. .+.++...++ .||..++|.|+
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~-~~~iivvdd~s~d~t~~~~~~~~~~~~~--~~~~~~~~~~---~g~~~~~n~~~ 74 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYP-KLEVIVVDDGSTDDTLEILEELAALYIR--RVLVVRDKEN---GGKAGALNAGL 74 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCC-ceEEEEEeCCCccchHHHHHHHhccccc--eEEEEEeccc---CCchHHHHHHH
Confidence 6899999999999999999999997 8999999999999999988887766542 3455555443 35788899999
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCC-ChhhH-HHHhhccccc---cccccCCCcc
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSG-SLGSY-CIYEYHMPCS---MGFATGGKTF 242 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~-~~~~~-~~~~~~~~~~---~~~~~~~~~~ 242 (519)
+.+ ++|+++++|+|+.++|++|++++..+.++++++++++........ ++... ....+..... .+....+...
T Consensus 75 ~~~--~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
T cd06423 75 RHA--KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVL 152 (180)
T ss_pred Hhc--CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheeccee
Confidence 999 789999999999999999999977777679999999855443322 22211 1111111100 0000112224
Q ss_pred cccccchhccHhhhccccccCcccCCCCCcccH
Q 010062 243 FLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDD 275 (519)
Q Consensus 243 ~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED 275 (519)
.+.|+++++||+++ +++|||++- .+.||
T Consensus 153 ~~~g~~~~~~~~~~--~~~ggf~~~---~~~eD 180 (180)
T cd06423 153 VLSGAFGAFRREAL--REVGGWDED---TLTED 180 (180)
T ss_pred ecCchHHHHHHHHH--HHhCCcccc---CcCCC
Confidence 67899999999999 789998864 56676
No 46
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=182.78 Aligned_cols=209 Identities=16% Similarity=0.196 Sum_probs=153.0
Q ss_pred CCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHH
Q 010062 83 LPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHN 162 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~n 162 (519)
.|.+++||++||..+.+.+||+++.+|+|+ +.++++|||+|+|.+.+.+++.. +| +++++..+.|.|..+.
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~-~~~iv~vDn~s~d~~~~~~~~~~--~~---~v~~i~~~~NlG~agg--- 72 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYP-DDVIVVVDNGSTDGSLEALKARF--FP---NVRLIENGENLGFAGG--- 72 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCC-CcEEEEccCCCCCCCHHHHHhhc--CC---cEEEEEcCCCccchhh---
Confidence 478999999999999999999999999999 66766899999999987766532 44 7999999988876543
Q ss_pred HHHHHHhccCCCc-EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHH-----Hh--h-cccccc
Q 010062 163 QLVGVENMHKDSK-YVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCI-----YE--Y-HMPCSM 233 (519)
Q Consensus 163 l~~gl~~a~~~gd-~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~-----~~--~-~~~~~~ 233 (519)
.|.|++.|..+++ +++++|.|+.++|++|++|++.+++++.+++++................ .. . ......
T Consensus 73 ~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (305)
T COG1216 73 FNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLE 152 (305)
T ss_pred hhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceeccccc
Confidence 3467777744444 8999999999999999999999999888888876332211111110000 00 0 000000
Q ss_pred cc---cc-CCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCC
Q 010062 234 GF---AT-GGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLAS 303 (519)
Q Consensus 234 ~~---~~-~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~ 303 (519)
.. .. ........|++|++||++| +++|++++-.. .+.||+|++.++++.|+++.+.|.+.+.|....
T Consensus 153 ~~~~~~~~~~~~~~~~G~~~li~~~~~--~~vG~~de~~F-~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~ 223 (305)
T COG1216 153 IAPDLSSYLEVVASLSGACLLIRREAF--EKVGGFDERFF-IYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGS 223 (305)
T ss_pred ccccccchhhhhhhcceeeeEEcHHHH--HHhCCCCcccc-eeehHHHHHHHHHHcCCeEEEeeccEEEEeccC
Confidence 00 00 0011136799999999999 88999998433 788999999999999989998888888876543
No 47
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.82 E-value=2.7e-19 Score=171.03 Aligned_cols=191 Identities=18% Similarity=0.118 Sum_probs=138.3
Q ss_pred EEeeccCCchHHHHHHHHHHhccC----CCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLY----GGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQ 163 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~y----p~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl 163 (519)
||||+|||++.+.+||+|+.+|.+ + ++|+|+|||+|+|.|.++++++.++++. .++++....+. |+.+++
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~-~~eiivvdd~S~D~t~~~~~~~~~~~~~--~i~~i~~~~n~---G~~~a~ 74 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSF-SYEIIVVDDGSKDGTAEVARKLARKNPA--LIRVLTLPKNR---GKGGAV 74 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCC-CEEEEEEeCCCCCchHHHHHHHHHhCCC--cEEEEEcccCC---CcHHHH
Confidence 699999999999999999999865 4 7999999999999999999999888774 35777766554 477899
Q ss_pred HHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCC-----ChhhH-HHHhhc--ccccccc
Q 010062 164 LVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSG-----SLGSY-CIYEYH--MPCSMGF 235 (519)
Q Consensus 164 ~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~-----~~~~~-~~~~~~--~~~~~~~ 235 (519)
+.|++.| ++|+|+++|+|..++|+++.++++.+.+ ++.++|.|.+.....+ ++... ...... .....+.
T Consensus 75 ~~g~~~a--~gd~i~~ld~D~~~~~~~l~~l~~~~~~-~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (211)
T cd04188 75 RAGMLAA--RGDYILFADADLATPFEELEKLEEALKT-SGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGL 151 (211)
T ss_pred HHHHHHh--cCCEEEEEeCCCCCCHHHHHHHHHHHhc-cCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCC
Confidence 9999999 7899999999999999999999999765 5567777744332221 22111 111010 0011111
Q ss_pred ccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCce
Q 010062 236 ATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVA 295 (519)
Q Consensus 236 ~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~ 295 (519)
. . .-...+..+++|+++ +++++.... ..+.+|.++..++.+.|+++...|..
T Consensus 152 ~---~-~d~~~g~~~~~r~~~--~~~~~~~~~--~~~~~d~el~~r~~~~g~~~~~vpi~ 203 (211)
T cd04188 152 G---I-KDTQCGFKLFTRDAA--RRLFPRLHL--ERWAFDVELLVLARRLGYPIEEVPVR 203 (211)
T ss_pred C---C-cccccCceeEcHHHH--HHHHhhhhc--cceEeeHHHHHHHHHcCCeEEEcCcc
Confidence 1 1 011235678999999 556533222 36789999998888888888888855
No 48
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.82 E-value=1.4e-19 Score=175.71 Aligned_cols=198 Identities=15% Similarity=0.070 Sum_probs=135.2
Q ss_pred EEeeccCCc-hHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHH
Q 010062 88 VVMPLKGFG-EHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVG 166 (519)
Q Consensus 88 VIIP~~ne~-~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~g 166 (519)
+|||+||++ +.+.+||+|+.+| ..|+|+|||+|+|.+....+. +.. +++++..+.+. |+.++.|.|
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q----~~~iivvDn~s~~~~~~~~~~-----~~~-~i~~i~~~~n~---G~~~a~N~g 67 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ----VDKVVVVDNSSGNDIELRLRL-----NSE-KIELIHLGENL---GIAKALNIG 67 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc----CCEEEEEeCCCCccHHHHhhc-----cCC-cEEEEECCCce---ehHHhhhHH
Confidence 589999999 9999999999998 369999988888776543322 222 68888776554 377888999
Q ss_pred HHhccC-CCcEEEEEcCCCccChHHHHHHH---HHHHhCCCeEEEEeccccCCCCChhhHHH-Hhhcc--ccccccccCC
Q 010062 167 VENMHK-DSKYVLFLDDDVRLHPGTIGALT---TEMEKNPEIFIQTGYPLDLPSGSLGSYCI-YEYHM--PCSMGFATGG 239 (519)
Q Consensus 167 l~~a~~-~gd~vv~lDaD~~~~pd~L~~lv---~~l~~dp~vg~V~g~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~ 239 (519)
++.+.. ++||++|+|+|+.++|++|++++ ..++++++++++++............... ..+.. .........
T Consensus 68 ~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (237)
T cd02526 68 IKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLK- 146 (237)
T ss_pred HHHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCce-
Confidence 999832 34999999999999999999994 55666788888776322211111100000 00000 000000001
Q ss_pred CcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCC
Q 010062 240 KTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLA 302 (519)
Q Consensus 240 ~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~ 302 (519)
......|+++++||++| +++||+++... ...||++++.++.+.|+++...|.+++.|..+
T Consensus 147 ~~~~~~~~~~~~rr~~~--~~~ggfd~~~~-~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~~~ 206 (237)
T cd02526 147 EVDFLITSGSLISLEAL--EKVGGFDEDLF-IDYVDTEWCLRARSKGYKIYVVPDAVLKHELG 206 (237)
T ss_pred EeeeeeccceEEcHHHH--HHhCCCCHHHc-CccchHHHHHHHHHcCCcEEEEcCeEEEeccc
Confidence 11245578899999999 77999987532 33699999988888888888888888877653
No 49
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.81 E-value=9.1e-19 Score=175.23 Aligned_cols=224 Identities=16% Similarity=0.161 Sum_probs=148.0
Q ss_pred EEEeeccCCc------hHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhH
Q 010062 87 TVVMPLKGFG------EHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKI 160 (519)
Q Consensus 87 SVIIP~~ne~------~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~ 160 (519)
|||||++|+. +.+..||+++..+.-+.++|||||||+|++...+.++++.++.. ..+++........-++.
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~---~~~~i~~~~~~~~f~~a 77 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNG---FIRYIRHEDNGEPFSRA 77 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccC---ceEEEEcCCCCCCcCHH
Confidence 7999999999 45777788888754444899999999999887777888777654 23355544332222467
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHH---HHHhCCCeEEEEeccccCCCCCh--hhH----HHHhhcccc
Q 010062 161 HNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTT---EMEKNPEIFIQTGYPLDLPSGSL--GSY----CIYEYHMPC 231 (519)
Q Consensus 161 ~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~---~l~~dp~vg~V~g~~~~~~~~~~--~~~----~~~~~~~~~ 231 (519)
.+.|.|++.| ++|+|+|+|+|+.++|+++..++. .+.+++...++....+...+.+. ... .........
T Consensus 78 ~arN~g~~~A--~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (281)
T PF10111_consen 78 KARNIGAKYA--RGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESF 155 (281)
T ss_pred HHHHHHHHHc--CCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHH
Confidence 7888999999 799999999999999999999999 67655544444332222222211 110 000000000
Q ss_pred cccc-ccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCC---CCH
Q 010062 232 SMGF-ATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASD---LSF 307 (519)
Q Consensus 232 ~~~~-~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~---~~~ 307 (519)
.... ...+. ...+|+|++++|+.| .++||+|+-..|.-.||.|++.++.+.|..+..++...++|....+ ..+
T Consensus 156 ~~~~~~~~~~-~~~~s~~~~i~r~~f--~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 232 (281)
T PF10111_consen 156 ISGKNSLWEF-IAFASSCFLINREDF--LEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPDYLVYHSHRWPIKYKGF 232 (281)
T ss_pred hhcccccccc-ccccceEEEEEHHHH--HHhCCCCccccCCCcchHHHHHHHHHcCCcEecChHHhcccccCCCccchHH
Confidence 0000 00011 134579999999999 7799999876644579999999899999999888877775533222 345
Q ss_pred HHHHHHhhhhH
Q 010062 308 GRYWNYLRKQT 318 (519)
Q Consensus 308 ~~~~~~~~rq~ 318 (519)
++++.+.....
T Consensus 233 R~~~~~~~~~~ 243 (281)
T PF10111_consen 233 RAYFSYYGLPW 243 (281)
T ss_pred HHHHHHhhhHH
Confidence 55554444433
No 50
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.80 E-value=1.2e-19 Score=164.68 Aligned_cols=164 Identities=17% Similarity=0.208 Sum_probs=114.4
Q ss_pred EEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHH
Q 010062 87 TVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVG 166 (519)
Q Consensus 87 SVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~g 166 (519)
|||||+||+.+.|.+||+|+.+|+++ ++|+|||||+|+|.+.++++++.+..+ +++++..+.+. |+..+++.|
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~-~~eiivvdd~s~d~~~~~~~~~~~~~~---~i~~i~~~~n~---g~~~~~n~~ 73 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDP-DFEIIVVDDGSTDETEEILEEYAESDP---NIRYIRNPENL---GFSAARNRG 73 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGC-EEEEEEEECS-SSSHHHHHHHHHCCST---TEEEEEHCCCS---HHHHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCC-CEEEEEecccccccccccccccccccc---ccccccccccc---ccccccccc
Confidence 79999999999999999999999777 899999999999999999999877222 79999887654 578889999
Q ss_pred HHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccC-CCCChhhH-HHHhh-cc--ccccccccCCCc
Q 010062 167 VENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDL-PSGSLGSY-CIYEY-HM--PCSMGFATGGKT 241 (519)
Q Consensus 167 l~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~-~~~~~~~~-~~~~~-~~--~~~~~~~~~~~~ 241 (519)
++.+ ++||++++|+|+.++|++|+++++.++++ +.+++.+..... ........ ..... .. ............
T Consensus 74 ~~~a--~~~~i~~ld~D~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (169)
T PF00535_consen 74 IKHA--KGEYILFLDDDDIISPDWLEELVEALEKN-PPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKI 150 (169)
T ss_dssp HHH----SSEEEEEETTEEE-TTHHHHHHHHHHHC-TTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTS
T ss_pred cccc--ceeEEEEeCCCceEcHHHHHHHHHHHHhC-CCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCc
Confidence 9999 78999999999999999999999999974 444554422221 11100000 00000 00 000000011223
Q ss_pred ccccccchhccHhhhcccccc
Q 010062 242 FFLWGGCMMMHADDFRLDRYG 262 (519)
Q Consensus 242 ~~~~G~~~~~Rr~~~~~~~~G 262 (519)
.+.+|+++++||++| +++|
T Consensus 151 ~~~~~~~~~~rr~~~--~~~~ 169 (169)
T PF00535_consen 151 SFFIGSCALFRRSVF--EEIG 169 (169)
T ss_dssp SEESSSCEEEEEHHH--HHCH
T ss_pred ccccccEEEEEHHHH--HhhC
Confidence 478899999999999 6565
No 51
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.80 E-value=8.3e-18 Score=165.13 Aligned_cols=193 Identities=12% Similarity=-0.017 Sum_probs=127.4
Q ss_pred CcEEEEeeccCCchHHHHHHHHHHhc---cCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhH
Q 010062 84 PRVTVVMPLKGFGEHNLLNWRSQVTS---LYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKI 160 (519)
Q Consensus 84 P~VSVIIP~~ne~~~L~~~L~Sl~~q---~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~ 160 (519)
|.||||||+||+++.|++||+|+.+| .++ ++|+|||||+|+|.|.++++++..++ +++++..+ + +|+.
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~-~~EiIVvDdgStD~t~~i~~~~~~~~----~i~~i~~~-~---~G~~ 71 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGI-SFEWIVVDGGSNDGTREFLENLNGIF----NLRFVSEP-D---NGIY 71 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCC-CEEEEEEECcCcccHHHHHHHhcccC----CEEEEECC-C---CCHH
Confidence 57999999999999999999999753 355 79999999999999999988865432 47777542 2 2577
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccC-CCCChhhHHHHhhccccccccccCC
Q 010062 161 HNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDL-PSGSLGSYCIYEYHMPCSMGFATGG 239 (519)
Q Consensus 161 ~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (519)
.++|.|++.| +||||+|+|+|+.++|+.++.+....++ +...++.|..... .++....+. ....... ...
T Consensus 72 ~A~N~Gi~~a--~g~~v~~ld~DD~~~~~~~~~~~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~---~~~~~~~---~~~ 142 (248)
T PRK10063 72 DAMNKGIAMA--QGRFALFLNSGDIFHQDAANFVRQLKMQ-KDNAMIIGDALLDFGDGHKIKRS---AKPGWYI---YHS 142 (248)
T ss_pred HHHHHHHHHc--CCCEEEEEeCCcccCcCHHHHHHHHHhC-CCCeEEEeeeEEEcCCCcEEEEc---cCChhHH---hcC
Confidence 8899999999 7999999999999999987654444444 3334444423222 111100000 0000000 000
Q ss_pred CcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccC
Q 010062 240 KTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPL 301 (519)
Q Consensus 240 ~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~ 301 (519)
....+.+++++|+.+ .. |+++.- ..++||+++..++-+.|.++...|..+.....
T Consensus 143 --~~~~~~~~~~~~~~~--~~-~~fd~~--~~~~~Dydl~lrl~~~g~~~~~v~~~l~~y~~ 197 (248)
T PRK10063 143 --LPASHQAIFFPVSGL--KK-WRYDLQ--YKVSSDYALAARLYKAGYAFKKLNGLVSEFSM 197 (248)
T ss_pred --CCCCCcEEEEEHHHH--hc-CCCCcc--cchHHhHHHHHHHHHcCCcEEEcCceeEEEeC
Confidence 012355778899988 43 556643 25689999995554555667766666555443
No 52
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.79 E-value=1.2e-18 Score=162.28 Aligned_cols=173 Identities=14% Similarity=0.082 Sum_probs=126.4
Q ss_pred EEeeccCCchHHHHHHHHHHhccCC-CCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYG-GPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVG 166 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp-~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~g 166 (519)
||||+||+++.+.+||+|+.+|.|+ .++|+|+|||+|+|++.++++++.++++ .++++..+.+. ||.++++.|
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~---~~~~~~~~~n~---G~~~a~n~g 74 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP---RVRVIRLSRNF---GKGAAVRAG 74 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC---CeEEEEccCCC---CccHHHHHH
Confidence 6899999999999999999999872 2699999999999999999999888876 46777776554 478899999
Q ss_pred HHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCC---CChhhHH-HHhh--ccccccccccCCC
Q 010062 167 VENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPS---GSLGSYC-IYEY--HMPCSMGFATGGK 240 (519)
Q Consensus 167 l~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~---~~~~~~~-~~~~--~~~~~~~~~~~~~ 240 (519)
++.+ ++|+++|+|+|+.++|++|++++..+.+ ++.++|.|....... .....+. ...+ ....... ..
T Consensus 75 ~~~a--~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 147 (185)
T cd04179 75 FKAA--RGDIVVTMDADLQHPPEDIPKLLEKLLE-GGADVVIGSRFVRGGGAGMPLLRRLGSRLFNFLIRLLLG----VR 147 (185)
T ss_pred HHHh--cCCEEEEEeCCCCCCHHHHHHHHHHHhc-cCCcEEEEEeecCCCcccchHHHHHHHHHHHHHHHHHcC----CC
Confidence 9999 7899999999999999999999999765 667788875444332 1221111 1000 0000011 11
Q ss_pred cccccccchhccHhhhcccccc--CcccCCCCCcccHHHHH
Q 010062 241 TFFLWGGCMMMHADDFRLDRYG--VVSGLRDGGYSDDMTLA 279 (519)
Q Consensus 241 ~~~~~G~~~~~Rr~~~~~~~~G--g~~~~~~g~~~ED~~l~ 279 (519)
.....|+++++||+++ +++| +++. .+.+|+++.
T Consensus 148 ~~~~~~~~~~~~r~~~--~~i~~~~~~~----~~~~~~~~~ 182 (185)
T cd04179 148 ISDTQSGFRLFRREVL--EALLSLLESN----GFEFGLELL 182 (185)
T ss_pred CcCCCCceeeeHHHHH--HHHHhhcccc----CcceeeEee
Confidence 2356688999999999 6674 3332 556666553
No 53
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.78 E-value=2.8e-16 Score=160.27 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=97.8
Q ss_pred CCcEEEEeeccCCchHHHHHHHHHH---hccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchh
Q 010062 83 LPRVTVVMPLKGFGEHNLLNWRSQV---TSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQK 159 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~~L~~~L~Sl~---~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K 159 (519)
.+++|||||+|||++.+.++++++. +|..+ ++|+|+|||+|+|.|.++++++.++... +++.+...++ .||
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~-~~EIIvVDDgS~D~T~~il~~~~~~~~~--~v~~i~~~~n---~G~ 78 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGK-EYEILLIDDGSSDNSAEMLVEAAQAPDS--HIVAILLNRN---YGQ 78 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCC-CEEEEEEeCCCCCcHHHHHHHHHhhcCC--cEEEEEeCCC---CCH
Confidence 3579999999999999999998874 34444 7999999999999999999987765432 4555554433 368
Q ss_pred HHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 010062 160 IHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYP 211 (519)
Q Consensus 160 ~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~ 211 (519)
.+|++.|+++| +||+++++|+|...+|+.+.++++.+++ +.++|++.+
T Consensus 79 ~~A~~~G~~~A--~gd~vv~~DaD~q~~p~~i~~l~~~~~~--~~DvV~~~r 126 (325)
T PRK10714 79 HSAIMAGFSHV--TGDLIITLDADLQNPPEEIPRLVAKADE--GYDVVGTVR 126 (325)
T ss_pred HHHHHHHHHhC--CCCEEEEECCCCCCCHHHHHHHHHHHHh--hCCEEEEEE
Confidence 88999999999 7999999999999999999999999974 456787744
No 54
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.77 E-value=1.2e-17 Score=168.71 Aligned_cols=195 Identities=13% Similarity=0.070 Sum_probs=128.7
Q ss_pred CCCcEEEEeeccCCchHHHHHHHHHHhccC-CCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhH
Q 010062 82 KLPRVTVVMPLKGFGEHNLLNWRSQVTSLY-GGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKI 160 (519)
Q Consensus 82 ~~P~VSVIIP~~ne~~~L~~~L~Sl~~q~y-p~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~ 160 (519)
..|+||||||+|||++.|.+||+|+.+|.+ +.++|||||||+|+|.|.++++++..+.-. ..+++.. .....||.
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~--~~~~~~~--~~~n~Gkg 104 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVS--REEILPE--LPPRPGKG 104 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhc--chhhhhc--cccCCCHH
Confidence 457899999999999999999999999875 335899999999999999988875433211 1111111 12234688
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEecc-ccCCC---------CChhhHH-HHhhc
Q 010062 161 HNQLVGVENMHKDSKYVLFLDDDVR-LHPGTIGALTTEMEKNPEIFIQTGYP-LDLPS---------GSLGSYC-IYEYH 228 (519)
Q Consensus 161 ~nl~~gl~~a~~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~dp~vg~V~g~~-~~~~~---------~~~~~~~-~~~~~ 228 (519)
.|++.|++.+ ++|+++|+|+|+. ++|++|.++++++.++|++++|.|.. ..... +...... +..+.
T Consensus 105 ~A~~~g~~~a--~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~~~~gr~~~~~~~~l~~ 182 (306)
T PRK13915 105 EALWRSLAAT--TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDATGGGRVTELVARPLLN 182 (306)
T ss_pred HHHHHHHHhc--CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCcCCCCchHHHHHHHHHH
Confidence 9999999998 7899999999997 89999999999997669999998842 11110 1111110 00010
Q ss_pred cccccccccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHH-HHHHhCCC-cEEecC
Q 010062 229 MPCSMGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLA-ALAGAHNR-LITSPP 293 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~-~~~~~~g~-~v~~~~ 293 (519)
. .... .... ..+.++.+++||+++ +++.. .. +++.|.++. ..+++.|. ++...+
T Consensus 183 ~--~~~~-l~~i-~dp~sG~~a~rr~~l--~~l~~----~~-~yg~e~~~l~~~~~~~g~~~i~~V~ 238 (306)
T PRK13915 183 L--LRPE-LAGF-VQPLGGEYAGRRELL--ESLPF----VP-GYGVEIGLLIDTLDRLGLDAIAQVD 238 (306)
T ss_pred H--HHHh-hhcc-cCcchHhHHHHHHHH--HhCCC----CC-CCeehHHHHHHHHHHhCcCceEEEE
Confidence 0 0000 0011 134466789999999 55532 22 466677666 45555443 555444
No 55
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.77 E-value=5.9e-18 Score=157.58 Aligned_cols=173 Identities=14% Similarity=0.084 Sum_probs=125.6
Q ss_pred EEeeccCCchHHHHHHHHHHhcc---CCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSL---YGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQL 164 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~---yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~ 164 (519)
||||+||+++.+.++|+++.++. ++ ++|+|+|||+|+|++.++++++.++++ +++++...++. |+.++++
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~---~i~~i~~~~n~---G~~~a~n 73 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGY-DYEIIFVDDGSTDRTLEILRELAARDP---RVKVIRLSRNF---GQQAALL 73 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCC-CeEEEEEeCCCCccHHHHHHHHHhhCC---CEEEEEecCCC---CcHHHHH
Confidence 68999999999999999887654 45 799999999999999999999888776 57777765543 5788999
Q ss_pred HHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHH-HhhccccccccccCCCccc
Q 010062 165 VGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCI-YEYHMPCSMGFATGGKTFF 243 (519)
Q Consensus 165 ~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 243 (519)
.|++++ ++|+++++|+|+.++|++|.++++.++ ++.++|.|.+.... .+...+.. ..+.... ... .......
T Consensus 74 ~g~~~a--~~d~i~~~D~D~~~~~~~l~~l~~~~~--~~~~~v~g~~~~~~-~~~~~~~~~~~~~~~~-~~~-~~~~~~~ 146 (181)
T cd04187 74 AGLDHA--RGDAVITMDADLQDPPELIPEMLAKWE--EGYDVVYGVRKNRK-ESWLKRLTSKLFYRLI-NKL-SGVDIPD 146 (181)
T ss_pred HHHHhc--CCCEEEEEeCCCCCCHHHHHHHHHHHh--CCCcEEEEEecCCc-chHHHHHHHHHHHHHH-HHH-cCCCCCC
Confidence 999999 789999999999999999999999965 45677777443332 33322211 1110000 000 0011124
Q ss_pred ccccchhccHhhhccccccCcccCCCCCcccHHHH
Q 010062 244 LWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTL 278 (519)
Q Consensus 244 ~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l 278 (519)
..|+++++||+++ +++|++++.. .+.+|.+.
T Consensus 147 ~~~~~~~~~r~~~--~~i~~~d~~~--~~~~~~~~ 177 (181)
T cd04187 147 NGGDFRLMDRKVV--DALLLLPERH--RFLRGLIA 177 (181)
T ss_pred CCCCEEEEcHHHH--HHHHhcCCCC--ccHHHHHH
Confidence 4577889999999 7799998763 46666654
No 56
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.77 E-value=3e-17 Score=164.15 Aligned_cols=196 Identities=15% Similarity=0.045 Sum_probs=132.1
Q ss_pred ccCCc-hHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhc
Q 010062 92 LKGFG-EHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENM 170 (519)
Q Consensus 92 ~~ne~-~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a 170 (519)
+||.+ +.|.+|++|+.+|. .|||||||+|+|. +.++++.++++ +++++..+.+.| .+.+.|.|++.|
T Consensus 2 tyn~~~~~l~~~l~sl~~q~----~~iiVVDN~S~~~--~~~~~~~~~~~---~i~~i~~~~N~G---~a~a~N~Gi~~a 69 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQV----DRIIAVDNSPHSD--QPLKNARLRGQ---KIALIHLGDNQG---IAGAQNQGLDAS 69 (281)
T ss_pred ccCccHHHHHHHHHHHHhcC----CEEEEEECcCCCc--HhHHHHhccCC---CeEEEECCCCcc---hHHHHHHHHHHH
Confidence 79975 79999999999984 5899999998765 22344444444 688888776654 456777888877
Q ss_pred c-CCCcEEEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEeccccCCCCChhhHHH-Hhhcccc-cc-ccccCCCccccc
Q 010062 171 H-KDSKYVLFLDDDVRLHPGTIGALTTEMEKNP-EIFIQTGYPLDLPSGSLGSYCI-YEYHMPC-SM-GFATGGKTFFLW 245 (519)
Q Consensus 171 ~-~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp-~vg~V~g~~~~~~~~~~~~~~~-~~~~~~~-~~-~~~~~~~~~~~~ 245 (519)
. .++|||+++|+|+.++|++|+++++.+++++ +++++++............... ....... .. .........++.
T Consensus 70 ~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (281)
T TIGR01556 70 FRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLI 149 (281)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCceeccEEE
Confidence 3 2479999999999999999999999998654 7777776322221111000000 0000000 00 000000112344
Q ss_pred ccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCC
Q 010062 246 GGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLA 302 (519)
Q Consensus 246 G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~ 302 (519)
++++++||+++ +++|++++... ...||.|++.++++.|+++...|.+.+.|..+
T Consensus 150 ~sg~li~~~~~--~~iG~fde~~f-i~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~g 203 (281)
T TIGR01556 150 SSGCLITREVY--QRLGMMDEELF-IDHVDTEWSLRAQNYGIPLYIDPDIVLEHRIG 203 (281)
T ss_pred cCcceeeHHHH--HHhCCccHhhc-ccchHHHHHHHHHHCCCEEEEeCCEEEEEecC
Confidence 56678999999 77999887543 34699999998889999999888888877654
No 57
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=99.67 E-value=2.5e-15 Score=134.61 Aligned_cols=200 Identities=15% Similarity=0.147 Sum_probs=141.4
Q ss_pred CcEEEEeeccCCchHHHHHHHHHH---hccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhH
Q 010062 84 PRVTVVMPLKGFGEHNLLNWRSQV---TSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKI 160 (519)
Q Consensus 84 P~VSVIIP~~ne~~~L~~~L~Sl~---~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~ 160 (519)
++.|||+|+|||.++|.-++.-+. .+.- .++|+|+|||+|.|.|.+++++++..+... ++.+..+....|. .
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~-~~~eiIivDD~SpDGt~~~a~~L~k~yg~d-~i~l~pR~~klGL---g 77 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMSEEG-KKYEIIIVDDASPDGTQEVAKALQKIYGED-NILLKPRTKKLGL---G 77 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhhhhc-CceEEEEEeCCCCCccHHHHHHHHHHhCCC-cEEEEeccCcccc---h
Confidence 478999999999998875444333 2222 269999999999999999999999888775 7888877655543 3
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCC---Chh--hHHH---Hhhccccc
Q 010062 161 HNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSG---SLG--SYCI---YEYHMPCS 232 (519)
Q Consensus 161 ~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~---~~~--~~~~---~~~~~~~~ 232 (519)
.|-..|+.+| +|+|+++.|||-..+|.++.++.+...+ .+.++|.|.++ .+++ +|. .+.+ ..+..+..
T Consensus 78 tAy~hgl~~a--~g~fiviMDaDlsHhPk~ipe~i~lq~~-~~~div~GTRY-a~~ggV~gW~mkRk~IS~gAn~la~~l 153 (238)
T KOG2978|consen 78 TAYIHGLKHA--TGDFIVIMDADLSHHPKFIPEFIRLQKE-GNYDIVLGTRY-AGGGGVYGWDMKRKIISRGANFLARIL 153 (238)
T ss_pred HHHHhhhhhc--cCCeEEEEeCccCCCchhHHHHHHHhhc-cCcceeeeeeE-cCCCceecchhhHHHHhhhhHHHHHHh
Confidence 4556899999 8999999999999999999999998764 77899999444 3433 221 1111 11111111
Q ss_pred cccccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeecc
Q 010062 233 MGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHP 300 (519)
Q Consensus 233 ~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~ 300 (519)
. .....-..|..=+.++++++. . .++....++.-.+++-.++++.|..|..+|...+...
T Consensus 154 l----~~~~sdltGsFrLykk~vl~~--l--i~e~vSkGyvfqmEll~ra~~~~y~IgEvPitFvdR~ 213 (238)
T KOG2978|consen 154 L----NPGVSDLTGSFRLYKKEVLEK--L--IEESVSKGYVFQMELLARARQHGYTIGEVPITFVDRT 213 (238)
T ss_pred c----cCCCccCcceeeeehHHHHHh--h--HHHhhccchhhhHHHHHhccccCceEeecceEEEeec
Confidence 1 112235568888999999832 1 2222223666777887899999999999988765543
No 58
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.64 E-value=6.8e-15 Score=130.52 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=126.0
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
|+||++|+.+.+.++++|+.+|+++ ++|+++++|+++|++.+.++++.+... .+..+.... ..++..+++.++
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~g~~~~~~~~~ 73 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYP-NFEVIVVDDGSTDGTLEILEEYAKKDP---RVIRVINEE---NQGLAAARNAGL 73 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCcc-ceEEEEEeCCCCccHHHHHHHHHhcCC---CeEEEEecC---CCChHHHHHHHH
Confidence 6899999999999999999999996 899999999999999888888765422 234444332 335778889999
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhccccccccccCCCccccccc
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKTFFLWGG 247 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 247 (519)
+.+ ++|+++++|+|..++|+++..++..+..+++.+++++. +
T Consensus 74 ~~~--~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~------------------------------------~ 115 (156)
T cd00761 74 KAA--RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP------------------------------------G 115 (156)
T ss_pred HHh--cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc------------------------------------c
Confidence 998 68999999999999999999986666666888888873 6
Q ss_pred chhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEE
Q 010062 248 CMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLIT 290 (519)
Q Consensus 248 ~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~ 290 (519)
+++++++.+ .+.|+++.... ...||.++...+..+|+.+.
T Consensus 116 ~~~~~~~~~--~~~~~~~~~~~-~~~ed~~~~~~~~~~g~~~~ 155 (156)
T cd00761 116 NLLFRRELL--EEIGGFDEALL-SGEEDDDFLLRLLRGGKVAF 155 (156)
T ss_pred hheeeHHHH--HHhCCcchHhc-CCcchHHHHHHHHhhccccc
Confidence 778999999 66888877643 45799999987777776543
No 59
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.54 E-value=8.5e-14 Score=135.04 Aligned_cols=101 Identities=19% Similarity=0.125 Sum_probs=85.9
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHH
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQL 164 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~ 164 (519)
++||+||+|||++.|.+||+|+..|. .|||||||+|+|.|.+++++ + +++++.. .+ .+...+.|
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~~----~eiivvD~gStD~t~~i~~~----~----~~~v~~~-~~---~g~~~~~n 64 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWAV----DEIIVVDSGSTDRTVEIAKE----Y----GAKVYQR-WW---DGFGAQRN 64 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhccc----CEEEEEeCCCCccHHHHHHH----c----CCEEEEC-CC---CChHHHHH
Confidence 48999999999999999999998772 39999999999999888763 2 4677666 33 24567778
Q ss_pred HHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCC
Q 010062 165 VGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPE 203 (519)
Q Consensus 165 ~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~ 203 (519)
.|++.+ ++|+|+++|+|..++|++++++.+.++++|.
T Consensus 65 ~~~~~a--~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 65 FALELA--TNDWVLSLDADERLTPELADEILALLATDDY 101 (229)
T ss_pred HHHHhC--CCCEEEEEeCCcCcCHHHHHHHHHHHhCCCC
Confidence 899998 7899999999999999999999999987665
No 60
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=9.2e-14 Score=128.99 Aligned_cols=106 Identities=20% Similarity=0.235 Sum_probs=89.0
Q ss_pred CCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHH
Q 010062 83 LPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHN 162 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~n 162 (519)
.|.+|||||+||+++.+.++|+|+.+|+|+ ++|+|+|||+|+|+|.++++++....+ ++....... ..|+..+
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~-~~eiivvddgs~d~t~~~~~~~~~~~~---~~~~~~~~~---~~g~~~~ 74 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYK-DFEIIVVDDGSTDGTTEIAIEYGAKDV---RVIRLINER---NGGLGAA 74 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhc-ceEEEEEeCCCCCChHHHHHHHhhhcc---eEEEeeccc---CCChHHH
Confidence 578999999999999999999999999998 699999999999999999999877642 233333333 3457889
Q ss_pred HHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHH
Q 010062 163 QLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEM 198 (519)
Q Consensus 163 l~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l 198 (519)
.+.++..+ ++|++.++|+|.. +++.+..+....
T Consensus 75 ~~~~~~~~--~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 75 RNAGLEYA--RGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HHhhHHhc--cCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 99999999 6799999999999 999888855554
No 61
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.51 E-value=6.6e-13 Score=124.94 Aligned_cols=138 Identities=24% Similarity=0.330 Sum_probs=97.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHH-Hhhccccc---cccccCCCcccccccchhc
Q 010062 176 YVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCI-YEYHMPCS---MGFATGGKTFFLWGGCMMM 251 (519)
Q Consensus 176 ~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~G~~~~~ 251 (519)
||+++|||+.++||+++++++.++ +|+++++++.....+.+++.++.. .++..... ......+....+.|+++++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 79 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLF 79 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceee
Confidence 689999999999999999999999 699999998444433344444321 22211100 0111122334678999999
Q ss_pred cHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCCCCCCHHHHHHHhhhhHHHHHh
Q 010062 252 HADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLASDLSFGRYWNYLRKQTFVLES 323 (519)
Q Consensus 252 Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~rq~~~~~~ 323 (519)
|++++ +++|+++ .. ..++||.+++.++.+.|+++.+.|++.+++. .+.++++++ +|+.+|.+.
T Consensus 80 r~~~l--~~vg~~~-~~-~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~--~p~t~~~~~---~Qr~RW~~g 142 (193)
T PF13632_consen 80 RREAL--REVGGFD-DP-FSIGEDMDLGFRLRRAGYRIVYVPDAIVYTE--APPTFRAFI---RQRRRWARG 142 (193)
T ss_pred eHHHH--HHhCccc-cc-ccccchHHHHHHHHHCCCEEEEecccceeee--CCCCHHHHH---HHHHHHHhh
Confidence 99999 7799998 33 3788999999887888888888888755544 356888888 666655443
No 62
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.39 E-value=1.4e-10 Score=123.21 Aligned_cols=231 Identities=21% Similarity=0.214 Sum_probs=138.8
Q ss_pred CCcEEEEeeccCCch-HHHHHHHHHHhccCCCCeEE-EEEECC------CCCcHHHHHHHHHhhc------C--------
Q 010062 83 LPRVTVVMPLKGFGE-HNLLNWRSQVTSLYGGPLEF-LFVVES------KEDPAYHSVLRLLQEF------K-------- 140 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~-~L~~~L~Sl~~q~yp~~~ei-IvV~d~------s~D~t~~i~~~l~~~~------~-------- 140 (519)
.+.+-.++|+|||.+ .|+.+|+|+..++||....+ +||.|+ .+-+|.+++-.....+ |
T Consensus 24 ~~~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (527)
T PF03142_consen 24 DKFVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLSYVSL 103 (527)
T ss_pred CceEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcceEEe
Confidence 345667899999985 79999999999999954443 444453 2335667766544410 0
Q ss_pred --------------------C----------CCc-eEEEEcC-------CCCCcchhHHHHHHHHH--------------
Q 010062 141 --------------------D----------DVD-AKVVVAG-------LSTTCSQKIHNQLVGVE-------------- 168 (519)
Q Consensus 141 --------------------~----------~~~-v~vv~~~-------~~~~~~~K~~nl~~gl~-------------- 168 (519)
+ +++ +-++..+ ...|..||...+.....
T Consensus 104 ~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~~~~~~~ 183 (527)
T PF03142_consen 104 GEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFNNPMTPL 183 (527)
T ss_pred ccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcCCCCchH
Confidence 0 001 1111111 12344566554332111
Q ss_pred ---------h---c-cCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCC-CCChhhHHH-Hhhcccccc
Q 010062 169 ---------N---M-HKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLP-SGSLGSYCI-YEYHMPCSM 233 (519)
Q Consensus 169 ---------~---a-~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~-~~~~~~~~~-~~~~~~~~~ 233 (519)
. . ....||++.+|||+.+.|+.+.+|+..|++||++++|+|.....+ ..++++... ++|......
T Consensus 184 ~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~n~~~s~~t~~Q~fEY~ish~l 263 (527)
T PF03142_consen 184 ELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRIDNKGQSWWTMYQVFEYAISHHL 263 (527)
T ss_pred HHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEcCCCCCHhhheeccchhHHHHH
Confidence 0 0 124699999999999999999999999999999999999533333 336655432 444333222
Q ss_pred cccc---CCCcccccccchhccHhhhccc---------------ccc--CcccCC---CCCcccHHHHHH-HHHhC-CCc
Q 010062 234 GFAT---GGKTFFLWGGCMMMHADDFRLD---------------RYG--VVSGLR---DGGYSDDMTLAA-LAGAH-NRL 288 (519)
Q Consensus 234 ~~~~---~~~~~~~~G~~~~~Rr~~~~~~---------------~~G--g~~~~~---~g~~~ED~~l~~-~~~~~-g~~ 288 (519)
.... -|...+..|++.++|-+++... ++. -.+.+. ...++||-.|+- +++++ +++
T Consensus 264 ~Ka~Es~fG~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~~lGEDR~LttLlLk~~~~~k 343 (527)
T PF03142_consen 264 QKAFESVFGSVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLLDLGEDRWLTTLLLKQFPGYK 343 (527)
T ss_pred HHHHHHHhCceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhhhcchhHHHHHHHHhhCCCce
Confidence 2221 2333477899999998877320 000 001111 014679999995 55543 677
Q ss_pred EEecCceeeeccCCCCCCHHHHHHHhh
Q 010062 289 ITSPPVAVFPHPLASDLSFGRYWNYLR 315 (519)
Q Consensus 289 v~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (519)
..+.+.+...+.. +.+|+.+++..|
T Consensus 344 ~~y~~~A~a~T~a--P~t~~vflsQRR 368 (527)
T PF03142_consen 344 TEYVPSAVAYTDA--PETFSVFLSQRR 368 (527)
T ss_pred EEEcccccccccC--CccHHHHHHHhh
Confidence 8888777665543 679999984333
No 63
>PLN02893 Cellulose synthase-like protein
Probab=99.37 E-value=3.1e-10 Score=123.67 Aligned_cols=98 Identities=11% Similarity=-0.019 Sum_probs=66.1
Q ss_pred cchhHHHHHHHHHhcc--CCCcEEEEEcCCCcc-ChHHHHHHHHHHHhCC----CeEEEEecccc--CC-CCChhhHHHH
Q 010062 156 CSQKIHNQLVGVENMH--KDSKYVLFLDDDVRL-HPGTIGALTTEMEKNP----EIFIQTGYPLD--LP-SGSLGSYCIY 225 (519)
Q Consensus 156 ~~~K~~nl~~gl~~a~--~~gd~vv~lDaD~~~-~pd~L~~lv~~l~~dp----~vg~V~g~~~~--~~-~~~~~~~~~~ 225 (519)
.+.|++|||.+++.+. .++++|+.+|+|..+ +|+++++.+-.|. || +++.||...+. .+ ++.+.+..+.
T Consensus 279 Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~-Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~v 357 (734)
T PLN02893 279 HHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLL-DPSMDPKLGYVQFPQIFHGINKNDIYAGELKR 357 (734)
T ss_pred cccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhc-CCCcCCceEEEeCcccccCCCcCCCCcchhHH
Confidence 4789999999999631 268999999999996 6899999999886 45 79999963322 22 2223333332
Q ss_pred hhccccccccccCCCcccccccchhccHhhh
Q 010062 226 EYHMPCSMGFATGGKTFFLWGGCMMMHADDF 256 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~~ 256 (519)
.+.. ...+....+. .++.|.+..+||+++
T Consensus 358 ff~~-~~~glDG~~g-p~y~GTGc~~RR~al 386 (734)
T PLN02893 358 LFQI-NMIGMDGLAG-PNYVGTGCFFRRRVF 386 (734)
T ss_pred HHHH-HhhcccccCC-ceeeccceEEEHHHh
Confidence 2211 1222222122 377899999999999
No 64
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=99.11 E-value=2.3e-09 Score=102.87 Aligned_cols=196 Identities=17% Similarity=0.152 Sum_probs=125.2
Q ss_pred cEEEEeeccCCchHHHH----HHHHHHhccCCC----CeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCc
Q 010062 85 RVTVVMPLKGFGEHNLL----NWRSQVTSLYGG----PLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTC 156 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~----~L~Sl~~q~yp~----~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~ 156 (519)
-.|||||.|||+..+.. |++++ ++.|.. .+|++||||+|+|.|.+++-++..++... ++||+....|.|
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~l-e~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d-~irV~~l~~nrg- 144 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYL-EKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDD-NIRVIKLKKNRG- 144 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHH-HHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcc-eEEEeehhccCC-
Confidence 58999999999986554 44444 344543 69999999999999999999999787754 899988766654
Q ss_pred chhHHHHHHHHHhccCCCcEEEEEcCCCc--cC-hHHHHHHHHHHHh-CCCeEEEEeccccCCC-C-----ChhhH-HHH
Q 010062 157 SQKIHNQLVGVENMHKDSKYVLFLDDDVR--LH-PGTIGALTTEMEK-NPEIFIQTGYPLDLPS-G-----SLGSY-CIY 225 (519)
Q Consensus 157 ~~K~~nl~~gl~~a~~~gd~vv~lDaD~~--~~-pd~L~~lv~~l~~-dp~vg~V~g~~~~~~~-~-----~~~~~-~~~ 225 (519)
|.++...|+-++ +|++++|.|||-. .+ -+.|+..+...+. -++-++++|.+-..-. . ++... +-+
T Consensus 145 --KGgAvR~g~l~~--rG~~ilfadAdGaTkf~d~ekLe~al~~~~~p~~r~~va~GsrahLe~~~a~a~rs~~r~iLM~ 220 (323)
T KOG2977|consen 145 --KGGAVRKGMLSS--RGQKILFADADGATKFADLEKLEKALNDKAGPGPRDDVACGSRAHLENTEAVAKRSVIRNILMY 220 (323)
T ss_pred --CCcceehhhHhc--cCceEEEEcCCCCccCCCHHHHHHHHHhhcCCCCCCceeecCHHHhhccHHHHHHhHhhHHHHH
Confidence 556666899888 7999999999964 33 3566666554442 2444555663322111 1 11111 113
Q ss_pred hhcccc-ccccccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCc
Q 010062 226 EYHMPC-SMGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPV 294 (519)
Q Consensus 226 ~~~~~~-~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~ 294 (519)
.||... ..+...-..+ . -++-+|.|++.+. + |..+....++-|.++-.++++-...+...+.
T Consensus 221 gFH~lv~~~a~rsI~DT-Q--cgfklftR~aa~~--i--f~~lh~e~W~fdvEll~La~~~~ipi~ei~v 283 (323)
T KOG2977|consen 221 GFHKLVWIFAIRSIRDT-Q--CGFKLFTRAAARR--I--FPWLHVERWAFDVELLYLAKRFTIPIKEIPV 283 (323)
T ss_pred HHHHHHHHHhcCccccc-c--hhHHHhHHHHHHh--h--cchhheeeeeccHHHHHHHHHcCCCcEEeee
Confidence 343321 1111111122 2 2567888887733 3 4433333678899998899888877766543
No 65
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=99.07 E-value=2.9e-09 Score=107.74 Aligned_cols=197 Identities=11% Similarity=0.052 Sum_probs=123.4
Q ss_pred EEEEeeccCCchHHHHHHHHHHhcc--CCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcc------
Q 010062 86 VTVVMPLKGFGEHNLLNWRSQVTSL--YGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCS------ 157 (519)
Q Consensus 86 VSVIIP~~ne~~~L~~~L~Sl~~q~--yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~------ 157 (519)
+.|+|.+||..+.+.+||+||++|. +. +++++|.+|++++++.++++.+. . +++++........+
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~-~~~liIs~DG~~~~~~~~v~~~~----~--~i~~i~~~~~~~~~~~~~~~ 74 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAE-KFPIIVSQDGGYEEVADVAKSFG----D--GVTHIQHPPISIKNVNPPHK 74 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCC-CceEEEEeCCCchHHHHHHHhhc----c--ccEEEEcccccccccCcccc
Confidence 5799999999999999999999984 43 69999999999887776665542 1 45555432211110
Q ss_pred ----hh-H----HHHHHHHHhccCCCcEEEEEcCCCccChH---HHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHH
Q 010062 158 ----QK-I----HNQLVGVENMHKDSKYVLFLDDDVRLHPG---TIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIY 225 (519)
Q Consensus 158 ----~K-~----~nl~~gl~~a~~~gd~vv~lDaD~~~~pd---~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~ 225 (519)
.+ + .+++.++... +++.++++|+|+.+.|| ++++++..+++|+.+.+|++.-..... ...
T Consensus 75 ~~~y~~ia~hyk~aln~vF~~~--~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~NdnG~~-~~~----- 146 (334)
T cd02514 75 FQGYYRIARHYKWALTQTFNLF--GYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWNDNGKE-HFV----- 146 (334)
T ss_pred cchhhHHHHHHHHHHHHHHHhc--CCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeeccCCcc-ccc-----
Confidence 11 1 2677888776 68999999999999999 668888888999999999994311000 000
Q ss_pred hhccccccccccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHH--HHHHhCCCcEEecCceeeeccCCC
Q 010062 226 EYHMPCSMGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLA--ALAGAHNRLITSPPVAVFPHPLAS 303 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~--~~~~~~g~~v~~~~~~~~~~~~~~ 303 (519)
... +....+ +.+..|-..+++|+.+ ++. -+.|.. . |.|.- .--.+.|+....|......|-...
T Consensus 147 ~~~-~~~lyr-----s~ff~glGWml~r~~W--~e~--~~~wp~--~--~WD~w~R~~~~rkgr~cirPeisRt~~~g~~ 212 (334)
T cd02514 147 DDT-PSLLYR-----TDFFPGLGWMLTRKLW--KEL--EPKWPK--A--FWDDWMRLPEQRKGRECIRPEISRTYHFGKK 212 (334)
T ss_pred CCC-cceEEE-----ecCCCchHHHHHHHHH--HHh--CCCCCC--C--ChHHhhcchhhhcCCccccCCcchheecccc
Confidence 000 011111 1245566668899999 444 224532 2 44443 345567766666655544443322
Q ss_pred CCCHHHHH
Q 010062 304 DLSFGRYW 311 (519)
Q Consensus 304 ~~~~~~~~ 311 (519)
..+..+|+
T Consensus 213 g~s~g~f~ 220 (334)
T cd02514 213 GVSNGQFF 220 (334)
T ss_pred ccccchHH
Confidence 22344443
No 66
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.6e-10 Score=112.99 Aligned_cols=202 Identities=14% Similarity=0.198 Sum_probs=134.5
Q ss_pred CCCCcEEEEeeccCCc-hHHHHHHHHHHhccCCCC-eEEEEEECCCCCcH-HHHHHHHHhhcCCCCceEEEEcCCCCCcc
Q 010062 81 IKLPRVTVVMPLKGFG-EHNLLNWRSQVTSLYGGP-LEFLFVVESKEDPA-YHSVLRLLQEFKDDVDAKVVVAGLSTTCS 157 (519)
Q Consensus 81 ~~~P~VSVIIP~~ne~-~~L~~~L~Sl~~q~yp~~-~eiIvV~d~s~D~t-~~i~~~l~~~~~~~~~v~vv~~~~~~~~~ 157 (519)
+++|++||||..+||. ..|-+++.|++..+-+.- -|||+|||.|+-+- .+.++++...+.+ -++|+.+.++.|
T Consensus 152 e~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnG--lVkV~Rne~REG-- 227 (603)
T KOG3737|consen 152 ENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNG--LVKVFRNERREG-- 227 (603)
T ss_pred ccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcC--EEEEEecchhhh--
Confidence 5689999999999999 689999999998765521 47888888887654 3667888888876 588888877665
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE------ecccc-CCC-C--ChhhHHHHhh
Q 010062 158 QKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQT------GYPLD-LPS-G--SLGSYCIYEY 227 (519)
Q Consensus 158 ~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~------g~~~~-~~~-~--~~~~~~~~~~ 227 (519)
-+++-..|..+| .|++++|+||.|.+.-+||.-++++..+|..+-.|- +..+. .|. + +-..+..+++
T Consensus 228 -LI~aRSiGA~~a--tGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeW 304 (603)
T KOG3737|consen 228 -LIQARSIGAQKA--TGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEW 304 (603)
T ss_pred -hhhhhccchhhc--cccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhh
Confidence 344445677777 899999999999999999999999998865433221 11111 110 0 1111222333
Q ss_pred cccc----cccc-------ccCCC-cccccccchhccHhhhccccccCcccCCCCCc-ccHHHHH-HHHHhCCCcEEec
Q 010062 228 HMPC----SMGF-------ATGGK-TFFLWGGCMMMHADDFRLDRYGVVSGLRDGGY-SDDMTLA-ALAGAHNRLITSP 292 (519)
Q Consensus 228 ~~~~----~~~~-------~~~~~-~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~-~ED~~l~-~~~~~~g~~v~~~ 292 (519)
.+-. ...+ ...+. ...-.|+-.++.|+.| -+.|.+|+-.. -+ +|.++++ ++.+.||..+..|
T Consensus 305 gmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F--~ELG~YDpgLq-iWGGEnfElSfKIWQCGG~i~fVP 380 (603)
T KOG3737|consen 305 GMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFF--FELGLYDPGLQ-IWGGENFELSFKIWQCGGKILFVP 380 (603)
T ss_pred hheeccCCCCHHHHHhhhccCCCCCCcccccceeeehHHHH--HHhccCCCcce-eecCcceeEEEEEEeeCCEEEEEE
Confidence 2210 0000 01111 1133488889999999 66888876321 22 5999999 6888888655554
No 67
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.6e-10 Score=121.43 Aligned_cols=203 Identities=14% Similarity=0.166 Sum_probs=138.1
Q ss_pred CCCCcEEEEeeccCCch-HHHHHHHHHHhccCCCC-eEEEEEECCCCCcH-HHHHHHHHhhcCCCCceEEEEcCCCCCcc
Q 010062 81 IKLPRVTVVMPLKGFGE-HNLLNWRSQVTSLYGGP-LEFLFVVESKEDPA-YHSVLRLLQEFKDDVDAKVVVAGLSTTCS 157 (519)
Q Consensus 81 ~~~P~VSVIIP~~ne~~-~L~~~L~Sl~~q~yp~~-~eiIvV~d~s~D~t-~~i~~~l~~~~~~~~~v~vv~~~~~~~~~ 157 (519)
..+|.+||||+.+||.. .+.+++.|+.+.+-+.- -|||+|||.|+..- .+.+++..+++. .++++....+.
T Consensus 139 ~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~---~v~i~r~~~R~--- 212 (578)
T KOG3736|consen 139 DKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFS---KVRILRTKKRE--- 212 (578)
T ss_pred cccCCCceEEEEecCCCcchhheEEeehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhc---ceeEEeecchh---
Confidence 45799999999999996 68899999998876522 58888888887654 445777777766 37777766554
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCC-CCChh-------hHHHHhhcc
Q 010062 158 QKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLP-SGSLG-------SYCIYEYHM 229 (519)
Q Consensus 158 ~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~-~~~~~-------~~~~~~~~~ 229 (519)
|++.+...|.+.| +||+++|+||.+....+||+-+++....|.. -+|+. ..+.. ..++. .+..+.+.+
T Consensus 213 GLIrARl~GA~~A--~geVL~FLDsHcE~n~gWLePLL~~I~~~r~-tvv~P-vID~Id~~tf~y~~~~~~~rGgFdW~l 288 (578)
T KOG3736|consen 213 GLIRARLLGASMA--TGEVLTFLDSHCEVNVGWLEPLLARIAEDRK-TVVCP-VIDVIDDNTFEYEKQSELMRGGFDWEL 288 (578)
T ss_pred hhHHHHhhhhhhh--hchheeeeecceeEecCcchHHHHHhhhcCc-eeecc-eEEeecCcCceecccCccceeeeecce
Confidence 5888888999999 8999999999999999999999999987543 44443 22211 11110 000011111
Q ss_pred -------c-cccccc---cCCC-cccccccchhccHhhhccccccCcccCCCCCcccHHHHH-HHHHhCCCcEEecCce
Q 010062 230 -------P-CSMGFA---TGGK-TFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLA-ALAGAHNRLITSPPVA 295 (519)
Q Consensus 230 -------~-~~~~~~---~~~~-~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~-~~~~~~g~~v~~~~~~ 295 (519)
+ ...... ..+. +...-|+..++.|+-| .++|.+|+--+.--+|.++|+ ++...||.....|...
T Consensus 289 ~f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF--~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSr 365 (578)
T KOG3736|consen 289 TFKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYF--GELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSR 365 (578)
T ss_pred eEEeccCCccHhhcccCCCCCcCCcccCCceEEeeHHHH--hhccCccccccccChhhceeeEEEeccCCeEEecCccc
Confidence 0 000000 1111 2345699999999999 779998875441225999999 6888888665555444
No 68
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.5e-10 Score=111.07 Aligned_cols=190 Identities=14% Similarity=0.180 Sum_probs=126.8
Q ss_pred CCCcEEEEeeccCCch-HHHHHHHHHHhccCCCC--eEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcch
Q 010062 82 KLPRVTVVMPLKGFGE-HNLLNWRSQVTSLYGGP--LEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQ 158 (519)
Q Consensus 82 ~~P~VSVIIP~~ne~~-~L~~~L~Sl~~q~yp~~--~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~ 158 (519)
.+|..||||..+||+. .|.+++.|+++++-+ + .|||+|||.|.|++. .+.+ .+.| +++++.+.++.|
T Consensus 122 dlp~TsviITfHNEARS~LLRTv~SvlnrsP~-~li~EiILVDD~S~Dped--~~~L-~ri~---kvr~LRN~~ReG--- 191 (559)
T KOG3738|consen 122 DLPPTSVIITFHNEARSTLLRTVVSVLNRSPE-HLIHEIILVDDFSQDPED--GKLL-KRIP---KVRVLRNNEREG--- 191 (559)
T ss_pred CCCCceEEEEeccHHHHHHHHHHHHHHcCChH-HhhheeEEecCCCCChHH--HHHH-hhhh---eeeeecccchhh---
Confidence 4688999999999995 799999999999765 4 599999999999863 3332 2334 688888776664
Q ss_pred hHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChh-----hHHH--Hhhcc--
Q 010062 159 KIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLG-----SYCI--YEYHM-- 229 (519)
Q Consensus 159 K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~-----~~~~--~~~~~-- 229 (519)
-++.-+.|...| ++.++.|+|+.|.+..+||+-|++...+|+. -+|+..--.+...++. +-++ +++..
T Consensus 192 LirSRvrGAdvA--~a~vltFLDSHcEvN~~WLePLL~Rvaed~t-rvVsPiiDvIn~dnf~Y~~asadLrGGFDWsLhF 268 (559)
T KOG3738|consen 192 LIRSRVRGADVA--QATVLTFLDSHCEVNEGWLEPLLERVAEDTT-RVVSPIIDVINLDNFSYVGASADLRGGFDWSLHF 268 (559)
T ss_pred hhhhhccccccc--cceEEEEEecceeecchhhHHHHHHHhhccc-ceeecccccccccccccccchhhhcCCcceEEEE
Confidence 344555677777 6899999999999999999999999987654 4454421111111111 0011 11111
Q ss_pred cc-----ccccc----cC-CCcccccccchhccHhhhccccccCcccCCCCCc-ccHHHHH-HHHHhCCC
Q 010062 230 PC-----SMGFA----TG-GKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGY-SDDMTLA-ALAGAHNR 287 (519)
Q Consensus 230 ~~-----~~~~~----~~-~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~-~ED~~l~-~~~~~~g~ 287 (519)
.+ .+..+ .. -.+...-|+-.++.|+-| ++.|-+|..-+ -+ +|.++++ +....||-
T Consensus 269 ~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF--~~LGkyd~~md-iWGGEn~ElsfrvW~CGGs 335 (559)
T KOG3738|consen 269 KWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWF--NELGKYDMDMD-IWGGENLELSFRVWQCGGS 335 (559)
T ss_pred EehhcCHHHHhhccCCCCcccCccccceeEEecHHHH--HHhcccCcccc-ccCCcceEEEEEEEeeCCe
Confidence 00 00000 00 112355689999999999 77888876433 23 4889998 56666664
No 69
>PLN02189 cellulose synthase
Probab=98.90 E-value=7.1e-07 Score=100.15 Aligned_cols=98 Identities=8% Similarity=0.019 Sum_probs=62.0
Q ss_pred cchhHHHHHHHHHhcc--CCCcEEEEEcCCCccC-hHHHHHHHHHHHhCC----CeEEEEecccc--CC-CCChhhHHHH
Q 010062 156 CSQKIHNQLVGVENMH--KDSKYVLFLDDDVRLH-PGTIGALTTEMEKNP----EIFIQTGYPLD--LP-SGSLGSYCIY 225 (519)
Q Consensus 156 ~~~K~~nl~~gl~~a~--~~gd~vv~lDaD~~~~-pd~L~~lv~~l~~dp----~vg~V~g~~~~--~~-~~~~~~~~~~ 225 (519)
.+.|++|||..++.+. .+++||+.+|+|..+. |+.+++.+-.|. || +++.||...+. ++ ++-+++..+.
T Consensus 513 Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCffl-Dp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~v 591 (1040)
T PLN02189 513 HHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLM-DPQIGRKVCYVQFPQRFDGIDTHDRYANRNTV 591 (1040)
T ss_pred cccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhc-CCccCceeEEEeCccccCCCCCCCccCCccce
Confidence 3569999999995532 3689999999999995 699999998887 58 88899873322 22 2233333221
Q ss_pred hhccccccccccCCCcccccccchhccHhhh
Q 010062 226 EYHMPCSMGFATGGKTFFLWGGCMMMHADDF 256 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~~ 256 (519)
.+.. ...|..-... .++.|.+.++||+++
T Consensus 592 ffdi-~~~GlDGlqG-P~YvGTGC~fRR~AL 620 (1040)
T PLN02189 592 FFDI-NMKGLDGIQG-PVYVGTGCVFRRQAL 620 (1040)
T ss_pred eeee-eecccccCCC-ccccccCceeeeeee
Confidence 1111 1122221112 266677777777777
No 70
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=98.86 E-value=2.3e-08 Score=95.99 Aligned_cols=176 Identities=16% Similarity=0.087 Sum_probs=95.8
Q ss_pred EEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHH
Q 010062 86 VTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLV 165 (519)
Q Consensus 86 VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~ 165 (519)
||||+++ |.++...+|++++.++..| +.|.|-+++.....+ -..+.|+
T Consensus 1 isiI~c~-n~~~~~~~~~~~i~~~~~~-~~~~i~i~~~~~~~s------------------------------~~~~yN~ 48 (217)
T PF13712_consen 1 ISIIICV-NDEELYEECLRSIKRLIGP-PGELIEIDNVRNAKS------------------------------MAAAYNE 48 (217)
T ss_dssp EEEEEEE-S-HHHHHHHHHHHHHTT---TEEEEEEE-SSS-S-------------------------------TTTHHHH
T ss_pred CEEEEEE-CCHHHHHHHHHHHHhhCCC-CceEEEEeccCCCcC------------------------------HHHHHHH
Confidence 4566555 4455688899999999998 778776655433211 1234668
Q ss_pred HHHhccCCCcEEEEEcCCCcc-ChHHHHHHHHHHHhCCCeEEEE--eccccCCCCChhhHHH-----Hhhc------ccc
Q 010062 166 GVENMHKDSKYVLFLDDDVRL-HPGTIGALTTEMEKNPEIFIQT--GYPLDLPSGSLGSYCI-----YEYH------MPC 231 (519)
Q Consensus 166 gl~~a~~~gd~vv~lDaD~~~-~pd~L~~lv~~l~~dp~vg~V~--g~~~~~~~~~~~~~~~-----~~~~------~~~ 231 (519)
|+++| +++|++|++.|+.+ +++|+..+++.|++||++|+++ |.....+.+.++.... ..+. ...
T Consensus 49 a~~~a--~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~~~~~~~~~w~~~~~~g~~~~~~~~~~~~~~~ 126 (217)
T PF13712_consen 49 AMEKA--KAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSKRLPPNGVWWESPNKVGKVREYGRIMHGHGPN 126 (217)
T ss_dssp HGGG----SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEESS-S-TTS---EEEEEETTEEEE----E---
T ss_pred HHHhC--CCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCCcCCCCCccccccccccccccccccccccccc
Confidence 99988 78999999999987 5899999999997789998887 4333333333221100 0000 000
Q ss_pred -----ccccc---cCCCcccccccchhccHhhhccccccCcccC-CCCCcccHHHHHHHHHhCCCcEEecCceeeeccC
Q 010062 232 -----SMGFA---TGGKTFFLWGGCMMMHADDFRLDRYGVVSGL-RDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPL 301 (519)
Q Consensus 232 -----~~~~~---~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~-~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~ 301 (519)
..+.. ........-|..|+++|+.+ +|++- ..|--.-|.+++..+++.|++++..+..+.+...
T Consensus 127 ~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~------~fde~~~~gfH~Ydvd~cl~~~~~G~~v~~~~~~~~H~s~ 199 (217)
T PF13712_consen 127 SAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP------RFDEDLFTGFHFYDVDQCLEARRAGYRVVVPPPWCIHFSG 199 (217)
T ss_dssp ----------ES-SSEEEEEE-TTEEEEETTB-----------SS--SSSSHHHHHHHHHHHTT-EEEE-----EE-S-
T ss_pred ccccccccccccCCceeEEEecceEEEEEcccC------CCCccccCCcchHHHHHHHHHHHhCCEEEecCceEEEcCC
Confidence 00000 00112355689999999987 23332 2322258999998888899999888777666443
No 71
>PLN02195 cellulose synthase A
Probab=98.84 E-value=1.4e-06 Score=97.30 Aligned_cols=98 Identities=11% Similarity=0.060 Sum_probs=59.4
Q ss_pred cchhHHHHHHHHHhcc--CCCcEEEEEcCCCccCh-HHHHHHHHHHHhCC----CeEEEEecccc--CC-CCChhhHHHH
Q 010062 156 CSQKIHNQLVGVENMH--KDSKYVLFLDDDVRLHP-GTIGALTTEMEKNP----EIFIQTGYPLD--LP-SGSLGSYCIY 225 (519)
Q Consensus 156 ~~~K~~nl~~gl~~a~--~~gd~vv~lDaD~~~~p-d~L~~lv~~l~~dp----~vg~V~g~~~~--~~-~~~~~~~~~~ 225 (519)
.+.|++|+|..++.+. .+++||+.+|+|..+.+ +++++.+-.|. || +++.||..... .+ ++.+.+..+.
T Consensus 434 Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~-D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ 512 (977)
T PLN02195 434 HHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLM-DPVVGRDVCYVQFPQRFDGIDRSDRYANRNVV 512 (977)
T ss_pred cccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhcc-CcccCCeeEEEcCCcccCCCCCCCCCCcccce
Confidence 3569999998887532 26899999999988765 79999998887 57 66788873322 22 2233333221
Q ss_pred hhccccccccccCCCcccccccchhccHhhh
Q 010062 226 EYHMPCSMGFATGGKTFFLWGGCMMMHADDF 256 (519)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~~ 256 (519)
.+.. ...+...... .++.|.+..+||+++
T Consensus 513 ffd~-~~~g~dglqG-P~YvGTGC~fRR~AL 541 (977)
T PLN02195 513 FFDV-NMKGLDGIQG-PVYVGTGCVFNRQAL 541 (977)
T ss_pred eeee-eeccccccCC-ccccccCceeeehhh
Confidence 1111 1122221111 255666667777766
No 72
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.79 E-value=9.7e-07 Score=97.60 Aligned_cols=160 Identities=20% Similarity=0.194 Sum_probs=100.8
Q ss_pred chhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhh-HHHHhhcccccccc
Q 010062 157 SQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGS-YCIYEYHMPCSMGF 235 (519)
Q Consensus 157 ~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~-~~~~~~~~~~~~~~ 235 (519)
+++..-++....+..++-++|+++|+|+.+.|+.|.+|++.|+.||++|.++| ......+++.. ....+|........
T Consensus 424 ~~~r~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG-~I~~~~~~w~v~~Q~FEY~Ish~l~K 502 (862)
T KOG2571|consen 424 NQHRWVMYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACG-RILNKGGSWVVAYQNFEYAISHNLQK 502 (862)
T ss_pred HHHHHHHHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcccceecc-ccccCCCceEEeHHHHHHHHHHHHHH
Confidence 55555666667777667789999999999999999999999999999999999 43333344422 12233433222222
Q ss_pred cc---CCCcccccccchhccHhhhccccc----cC-ccc---CCCCCcccHHHHHH-HHHhCCCcEEecCceeeeccCCC
Q 010062 236 AT---GGKTFFLWGGCMMMHADDFRLDRY----GV-VSG---LRDGGYSDDMTLAA-LAGAHNRLITSPPVAVFPHPLAS 303 (519)
Q Consensus 236 ~~---~~~~~~~~G~~~~~Rr~~~~~~~~----Gg-~~~---~~~g~~~ED~~l~~-~~~~~g~~v~~~~~~~~~~~~~~ 303 (519)
+. -|...+..|+..++|-+++.++.. |- +++ .....++||--|+. .+.+ |+.+.+.+.....++.
T Consensus 503 a~ESvFG~VsclPGcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llsk-gy~l~Y~a~s~a~t~~-- 579 (862)
T KOG2571|consen 503 ATESVFGCVSCLPGCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSK-GYRLKYVAASDAETEA-- 579 (862)
T ss_pred hhhhhceeEEecCchhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhc-cceeeeeccccccccC--
Confidence 21 233347779999999988854321 10 011 01124679999995 5555 6666666555444432
Q ss_pred CCCHHHHHHHhhhhHHHHHh
Q 010062 304 DLSFGRYWNYLRKQTFVLES 323 (519)
Q Consensus 304 ~~~~~~~~~~~~rq~~~~~~ 323 (519)
++++.+|+ .++.+|...
T Consensus 580 Pe~~~efl---~QrrRW~~s 596 (862)
T KOG2571|consen 580 PESFLEFL---NQRRRWLNS 596 (862)
T ss_pred cHhHHHHH---HHhhhhccc
Confidence 56777777 444444443
No 73
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=98.76 E-value=4.7e-06 Score=93.99 Aligned_cols=96 Identities=9% Similarity=0.058 Sum_probs=60.4
Q ss_pred cchhHHHHHHHHHhcc--CCCcEEEEEcCCCccC-hHHHHHHHHHHHhCCC----eEEEEecccc--CC-CCChhhHHH-
Q 010062 156 CSQKIHNQLVGVENMH--KDSKYVLFLDDDVRLH-PGTIGALTTEMEKNPE----IFIQTGYPLD--LP-SGSLGSYCI- 224 (519)
Q Consensus 156 ~~~K~~nl~~gl~~a~--~~gd~vv~lDaD~~~~-pd~L~~lv~~l~~dp~----vg~V~g~~~~--~~-~~~~~~~~~- 224 (519)
.+.|++|||..++.+. .+++||+.+|+|..+. |+.+++.+-.|. ||+ ++.||...+. ++ ++-+.+..+
T Consensus 531 Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~l-Dp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~v 609 (1079)
T PLN02638 531 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLM-DPNLGKSVCYVQFPQRFDGIDRNDRYANRNTV 609 (1079)
T ss_pred cccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhc-CcccCCeeEEecCCcccCCCCCCCccccccee
Confidence 3679999999885431 2689999999999876 999999998887 576 7788863322 22 222333322
Q ss_pred -HhhccccccccccCCCcccccccchhccHhhh
Q 010062 225 -YEYHMPCSMGFATGGKTFFLWGGCMMMHADDF 256 (519)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~~ 256 (519)
++..+ .|..-... .++.|.+.++||+++
T Consensus 610 ffdi~~---~GlDGlqG-P~YvGTGC~fRR~AL 638 (1079)
T PLN02638 610 FFDINL---RGLDGIQG-PVYVGTGCVFNRTAL 638 (1079)
T ss_pred eecccc---ccccccCC-ccccccCcceeehhh
Confidence 22222 22221111 256677777777776
No 74
>PLN02248 cellulose synthase-like protein
Probab=98.43 E-value=5.9e-05 Score=85.43 Aligned_cols=98 Identities=11% Similarity=-0.051 Sum_probs=57.7
Q ss_pred chhHHHHHHHHHhc--cCCCcEEEEEcCCCccC-hHHHHHHHHHHHh--CCCeEEEEecccc--CC-CCChhhHHHHhhc
Q 010062 157 SQKIHNQLVGVENM--HKDSKYVLFLDDDVRLH-PGTIGALTTEMEK--NPEIFIQTGYPLD--LP-SGSLGSYCIYEYH 228 (519)
Q Consensus 157 ~~K~~nl~~gl~~a--~~~gd~vv~lDaD~~~~-pd~L~~lv~~l~~--dp~vg~V~g~~~~--~~-~~~~~~~~~~~~~ 228 (519)
+.|++|||.-++.. -.+++||+.+|+|..+. ++.+++.+-.|.+ .++++.||...+. ++ ++-+.+..+..+.
T Consensus 601 h~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffd 680 (1135)
T PLN02248 601 NKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFD 680 (1135)
T ss_pred ccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCCCCceEEEcCCcccCCCCCCCccCCcceeeee
Confidence 55999997666532 12689999999999974 5699998888862 2688889873322 22 2223333221111
Q ss_pred cccccccccCCCcccccccchhccHhhh
Q 010062 229 MPCSMGFATGGKTFFLWGGCMMMHADDF 256 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~~~G~~~~~Rr~~~ 256 (519)
. ...+..-... .++.|.+.++||+++
T Consensus 681 i-~~~GlDGlqG-P~YvGTGCffRR~AL 706 (1135)
T PLN02248 681 V-NMRALDGLQG-PVYVGTGCLFRRIAL 706 (1135)
T ss_pred e-eeccccccCC-ccccccCceeeehhh
Confidence 1 1122221111 256677777777776
No 75
>PLN02190 cellulose synthase-like protein
Probab=98.41 E-value=5e-05 Score=83.28 Aligned_cols=54 Identities=11% Similarity=-0.009 Sum_probs=41.3
Q ss_pred cchhHHHHHHHHHhcc--CCCcEEEEEcCCCcc-ChHHHHHHHHHHHhCC----CeEEEEe
Q 010062 156 CSQKIHNQLVGVENMH--KDSKYVLFLDDDVRL-HPGTIGALTTEMEKNP----EIFIQTG 209 (519)
Q Consensus 156 ~~~K~~nl~~gl~~a~--~~gd~vv~lDaD~~~-~pd~L~~lv~~l~~dp----~vg~V~g 209 (519)
.+.|++|+|.-++-.. .++++|+-+|.|... +|+.+++.+-.|.+++ +++.||-
T Consensus 267 Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~~~~~~~~~fVQf 327 (756)
T PLN02190 267 HHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQKSKNSNHCAFVQF 327 (756)
T ss_pred cccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCCCCCCCeeEEEeC
Confidence 5789999997776532 368999999999976 7899999887776321 4677775
No 76
>PLN02400 cellulose synthase
Probab=98.36 E-value=0.00016 Score=81.99 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=41.2
Q ss_pred cchhHHHHHHHHHhcc--CCCcEEEEEcCCCcc-ChHHHHHHHHHHHhCC----CeEEEEe
Q 010062 156 CSQKIHNQLVGVENMH--KDSKYVLFLDDDVRL-HPGTIGALTTEMEKNP----EIFIQTG 209 (519)
Q Consensus 156 ~~~K~~nl~~gl~~a~--~~gd~vv~lDaD~~~-~pd~L~~lv~~l~~dp----~vg~V~g 209 (519)
.+.|++|||.-++-.. .++.||+-+|.|... .|+.+++.+=.|. || +++-||-
T Consensus 538 Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~l-D~~~g~~~afVQF 597 (1085)
T PLN02400 538 HHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAIGKKTCYVQF 597 (1085)
T ss_pred cchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhhee-ccCCCceeEEEeC
Confidence 4679999998777431 268999999999998 7899999887776 35 5667765
No 77
>PLN02436 cellulose synthase A
Probab=98.34 E-value=0.00027 Score=80.00 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=41.9
Q ss_pred cchhHHHHHHHHHhcc--CCCcEEEEEcCCCc-cChHHHHHHHHHHHhCC----CeEEEEe
Q 010062 156 CSQKIHNQLVGVENMH--KDSKYVLFLDDDVR-LHPGTIGALTTEMEKNP----EIFIQTG 209 (519)
Q Consensus 156 ~~~K~~nl~~gl~~a~--~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~dp----~vg~V~g 209 (519)
.+.|++|||..++.+. .+++||+-+|.|.. -.|+.+++.+=.|. || +++-||-
T Consensus 547 Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfll-D~~~g~~~afVQF 606 (1094)
T PLN02436 547 HHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKKICYVQF 606 (1094)
T ss_pred cchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhc-CCccCCeeEEEcC
Confidence 4789999998887542 26899999999995 57899999888876 46 6777775
No 78
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=98.01 E-value=3.3e-05 Score=64.12 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=58.6
Q ss_pred cCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCc-chhHHHHHHHHHhcc
Q 010062 93 KGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTC-SQKIHNQLVGVENMH 171 (519)
Q Consensus 93 ~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~-~~K~~nl~~gl~~a~ 171 (519)
+||++.|.+.|+...+.... +++++||+|+|+|.++++++ + .++++....+... ..+....+...+..
T Consensus 1 rne~~~L~~wl~~~~~lG~d---~i~i~d~~s~D~t~~~l~~~----~---~v~i~~~~~~~~~~~~~~~~~~~~~~~~- 69 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLALGVD---HIYIYDDGSTDGTREILRAL----P---GVGIIRWVDPYRDERRQRAWRNALIERA- 69 (97)
T ss_pred CChHHHHHHHHHHHHHcCCC---EEEEEECCCCccHHHHHHhC----C---CcEEEEeCCCccchHHHHHHHHHHHHhC-
Confidence 69999999999999887664 68889999999999887764 3 4566554333221 12222333333332
Q ss_pred CCCcEEEEEcCCCccCh
Q 010062 172 KDSKYVLFLDDDVRLHP 188 (519)
Q Consensus 172 ~~gd~vv~lDaD~~~~p 188 (519)
.++|+++++|+|-.+.+
T Consensus 70 ~~~dWvl~~D~DEfl~~ 86 (97)
T PF13704_consen 70 FDADWVLFLDADEFLVP 86 (97)
T ss_pred CCCCEEEEEeeeEEEec
Confidence 36899999999987644
No 79
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=97.93 E-value=0.0087 Score=68.16 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHhcc--CCCcEEEEEcCCCcc-ChHHHHHHHHHHHhCC----CeEEEEe
Q 010062 156 CSQKIHNQLVGVENMH--KDSKYVLFLDDDVRL-HPGTIGALTTEMEKNP----EIFIQTG 209 (519)
Q Consensus 156 ~~~K~~nl~~gl~~a~--~~gd~vv~lDaD~~~-~pd~L~~lv~~l~~dp----~vg~V~g 209 (519)
.+.|++|||.-++.+. .++.||+-+|.|... +|+.+++.+=.|. || +++-||-
T Consensus 469 Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~l-D~~~g~~~afVQF 528 (1044)
T PLN02915 469 HHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLM-DPQLGKKLCYVQF 528 (1044)
T ss_pred cchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeee-cCCCCCeeEEEeC
Confidence 4679999997776542 257999999999986 6788888776665 35 6777774
No 80
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=97.90 E-value=0.00015 Score=69.00 Aligned_cols=152 Identities=18% Similarity=0.178 Sum_probs=94.3
Q ss_pred cEEEEeeccCCchHHHHHHHHH---HhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHH
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQ---VTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIH 161 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl---~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~ 161 (519)
+|+||||-+|.+++|...|..+ +...- -++.|.|+....+ .. .| |+.
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq~-~~~~i~vi~Q~~~-~~---------------------------FN-R~~ 52 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQ-LDYRIFVIEQVGN-FR---------------------------FN-RAK 52 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhcC-CcEEEEEEEecCC-cc---------------------------ch-hhh
Confidence 6999999999999888777665 22222 2567655543322 11 11 333
Q ss_pred HHHHHHHhccCC--CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhccccccccccCC
Q 010062 162 NQLVGVENMHKD--SKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGG 239 (519)
Q Consensus 162 nl~~gl~~a~~~--gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (519)
-+|.|...|... .|+++|-|-|-.+..+.+..- . .+.|..-.+.- . .+... . +
T Consensus 53 llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y~--~-~~~p~H~s~~~---~------------~~~~~--l-----p 107 (219)
T cd00899 53 LLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLYG--C-EEGPRHLSVPL---D------------KFHYK--L-----P 107 (219)
T ss_pred hhhHHHHHHhhcCCccEEEEecccccccCcccccc--C-CCCCeEEEEee---c------------ccccc--c-----C
Confidence 455666655433 689999999999988874421 1 22222111110 0 01000 0 0
Q ss_pred CcccccccchhccHhhhccccccCcccCCCCCcc-cHHHHHHHHHhCCCcEEecCce
Q 010062 240 KTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYS-DDMTLAALAGAHNRLITSPPVA 295 (519)
Q Consensus 240 ~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~-ED~~l~~~~~~~g~~v~~~~~~ 295 (519)
. ....||+++++|+.| .+++|+++... +++ ||-|+..++...|.++..++..
T Consensus 108 y-~~~~Gg~~~~~k~~f--~~VNGf~n~f~-GWGgEDdd~~~Rl~~~g~~~~r~~~~ 160 (219)
T cd00899 108 Y-KTYFGGVLALTREQF--RKVNGFSNAYW-GWGGEDDDLYNRIKAAGLKITRPSGD 160 (219)
T ss_pred c-ccccccceeeEHHHH--HHhCCcCCcCc-cCCcchHHHHHHHHHCCCeEEeccCc
Confidence 1 134689999999999 77999998655 454 9999998888888777766543
No 81
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.54 E-value=0.0016 Score=63.84 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=76.9
Q ss_pred CCCCCcEEEEeeccCCchHHHHHHHHHHhccCCCC-eEEEEEECCCC--CcHHHHHHHHHhhcCC-------CCceEEEE
Q 010062 80 QIKLPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGP-LEFLFVVESKE--DPAYHSVLRLLQEFKD-------DVDAKVVV 149 (519)
Q Consensus 80 ~~~~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~-~eiIvV~d~s~--D~t~~i~~~l~~~~~~-------~~~v~vv~ 149 (519)
..+.++|-|+.|++|.+..+.+-++.|.+++||.+ +.+=+++++++ |.+.+.+++...+... .-.+.++.
T Consensus 21 ~~~~e~VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~ 100 (269)
T PF03452_consen 21 ARNKESVLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILR 100 (269)
T ss_pred cccCCeEEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEc
Confidence 34567999999999999999999999999999965 67777888888 8888777754433210 01466665
Q ss_pred cCCCC--C---------cchhHH------HHHHHHHhc-cCCCcEEEEEcCCCc-cChHHHHHHHH
Q 010062 150 AGLST--T---------CSQKIH------NQLVGVENM-HKDSKYVLFLDDDVR-LHPGTIGALTT 196 (519)
Q Consensus 150 ~~~~~--~---------~~~K~~------nl~~gl~~a-~~~gd~vv~lDaD~~-~~pd~L~~lv~ 196 (519)
.+... + ..+|.+ +-|..+..+ ++..+||+++|+|+. .+|+.|+.|++
T Consensus 101 ~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~ 166 (269)
T PF03452_consen 101 KDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIA 166 (269)
T ss_pred CCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHh
Confidence 32211 0 011111 112222222 236799999999998 46677777765
No 82
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=97.37 E-value=0.0048 Score=59.36 Aligned_cols=185 Identities=13% Similarity=0.042 Sum_probs=94.6
Q ss_pred CcEEEEeeccCCch--HH-HHHHH--H---HHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCC
Q 010062 84 PRVTVVMPLKGFGE--HN-LLNWR--S---QVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTT 155 (519)
Q Consensus 84 P~VSVIIP~~ne~~--~L-~~~L~--S---l~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~ 155 (519)
|+.++|||+--.++ .. .+.+. + ....++ ..++|+++..+.- ...++.+....| ++-++..+.+..
T Consensus 2 ~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~--~~~vi~~~~~~~~--d~~i~~~i~~~~---~~~yl~~~s~~~ 74 (346)
T COG4092 2 QPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSD--ITMVICLRAHEVM--DRLIRSYIDPMP---RVLYLDFGSPEP 74 (346)
T ss_pred CCcceEeecchhhccchhHHHHHhhHhhhhhccccc--cEEEEEEecchhH--HHHHHHHhcccc---ceEEEecCCCcc
Confidence 56889999865432 22 22222 1 122223 3788776665421 145666776665 455555433322
Q ss_pred --cchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHH-----HHHHhCCCeEEEEeccccCCCCCh---------
Q 010062 156 --CSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALT-----TEMEKNPEIFIQTGYPLDLPSGSL--------- 219 (519)
Q Consensus 156 --~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv-----~~l~~dp~vg~V~g~~~~~~~~~~--------- 219 (519)
..+++.|..+-..+-+-++++|+|+|.||..+.|-..+++ ..+..|=++-+|-...+.....+.
T Consensus 75 F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f 154 (346)
T COG4092 75 FASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMF 154 (346)
T ss_pred ccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHh
Confidence 2245554333233211147999999999999966555554 444433333334332221111111
Q ss_pred hhHHHHhhccccccccc-cCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHH
Q 010062 220 GSYCIYEYHMPCSMGFA-TGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAA 280 (519)
Q Consensus 220 ~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~ 280 (519)
+..+..+- ....+. ..........+..++.|..| -+.||.++-..|.-+||+++-.
T Consensus 155 ~d~~i~es---~~~~~~~~~~ff~~~~T~~~liN~~~F--~~tgGydE~F~GhG~EDfe~~~ 211 (346)
T COG4092 155 LDAMIFES---PLAEFRKEDNFFIAPYTNIFLINRRMF--SLTGGYDERFRGHGSEDFEFLT 211 (346)
T ss_pred hhhHhhhh---HHHHhCcccccccccccceEEEehhHH--HHhcCCccccccCCchhHHHHH
Confidence 11111110 001111 00000012345667899999 6789999977767789999974
No 83
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=97.18 E-value=0.019 Score=62.23 Aligned_cols=211 Identities=14% Similarity=0.112 Sum_probs=114.2
Q ss_pred CCcEEEEeeccCC-chHHHHHHHH---HHhccCCCCeEEEEEECCC-CCcH-----HHHHHHHHhhcCCCCceEEEEcCC
Q 010062 83 LPRVTVVMPLKGF-GEHNLLNWRS---QVTSLYGGPLEFLFVVESK-EDPA-----YHSVLRLLQEFKDDVDAKVVVAGL 152 (519)
Q Consensus 83 ~P~VSVIIP~~ne-~~~L~~~L~S---l~~q~yp~~~eiIvV~d~s-~D~t-----~~i~~~l~~~~~~~~~v~vv~~~~ 152 (519)
..+|.||+|+.+. .+.+.+-++. ++-+. ..+...++|...+ +|.. .+.++++..++|.. +++++....
T Consensus 246 ~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~-~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~-~i~~i~~~~ 323 (499)
T PF05679_consen 246 STRVHIIVPLSGREADWFRRFLENFEKVCLET-DDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFS-RIKWISVKT 323 (499)
T ss_pred CCEEEEEEEecCccHHHHHHHHHHHHHHhccc-CCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCcc-ceEEEEecC
Confidence 3689999999999 6655554444 33222 2234444444432 3321 24677888888765 788887651
Q ss_pred CCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc--cCCCCChhhHH--HHhhc
Q 010062 153 STTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPL--DLPSGSLGSYC--IYEYH 228 (519)
Q Consensus 153 ~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~--~~~~~~~~~~~--~~~~~ 228 (519)
+.-.+..++..|++... ..+++.|+|-|..+++++|.+.-..-. ++--+-...++ +.|.-...... .....
T Consensus 324 --~~fsr~~~Ld~g~~~~~-~d~L~f~~Dvd~~f~~~fL~rcR~nti--~g~qvy~PI~Fs~y~p~~~~~~~~~~~~~~~ 398 (499)
T PF05679_consen 324 --GEFSRGAALDVGAKKFP-PDSLLFFCDVDMVFTSDFLNRCRMNTI--PGKQVYFPIVFSQYNPDIVYAGKPPEPDQFD 398 (499)
T ss_pred --CCccHHHHHHhhcccCC-CCcEEEEEeCCcccCHHHHHHHHHhhh--cCcEEEEeeeccccCCcccccCCCCccccCc
Confidence 12235667888888765 468999999999999999999765543 33223222222 12211000000 00000
Q ss_pred cccccccccCCCcccccccchhccHhhhccccc--cCcccCCCCCcccHHHHHH-HHHhC-CCcE-EecCceeee--ccC
Q 010062 229 MPCSMGFATGGKTFFLWGGCMMMHADDFRLDRY--GVVSGLRDGGYSDDMTLAA-LAGAH-NRLI-TSPPVAVFP--HPL 301 (519)
Q Consensus 229 ~~~~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~--Gg~~~~~~g~~~ED~~l~~-~~~~~-g~~v-~~~~~~~~~--~~~ 301 (519)
.....|+- ..+.+|. +++-++.| .++ ||++....|--.||.+|.. .++.+ ...| +.+...+++ |+.
T Consensus 399 i~~~~G~w----~~~gfg~-~~~YksDy--~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~ep~L~h~yh~~ 471 (499)
T PF05679_consen 399 ISKDTGFW----RRFGFGM-VCFYKSDY--MRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAVEPGLVHRYHPK 471 (499)
T ss_pred cCCCCCcc----ccCCCce-EEEEhhhh--hhhcccccccccccccccHHHHHHHHHhCCCceEEEEccCCCeEEEeccc
Confidence 00111111 1123333 34666666 556 7787765544569999996 55554 2444 343333332 444
Q ss_pred CCCCCH
Q 010062 302 ASDLSF 307 (519)
Q Consensus 302 ~~~~~~ 307 (519)
.+..++
T Consensus 472 ~C~~~l 477 (499)
T PF05679_consen 472 HCDPSL 477 (499)
T ss_pred CCCCCC
Confidence 444333
No 84
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=97.05 E-value=0.0021 Score=67.20 Aligned_cols=204 Identities=11% Similarity=0.107 Sum_probs=99.9
Q ss_pred CCcEEEEeeccCCchHHHHHHHHHHhccCC-CCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCC-------CC
Q 010062 83 LPRVTVVMPLKGFGEHNLLNWRSQVTSLYG-GPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGL-------ST 154 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp-~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~-------~~ 154 (519)
.|.+.|+|-+||....+.+||+||++..-. ..+.|+|-.|++++.+.++++++.. .++.+.... +.
T Consensus 92 ~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y~~------~v~~i~~~~~~~i~~~~~ 165 (434)
T PF03071_consen 92 EPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSYGD------QVTYIQHPDFSPITIPPK 165 (434)
T ss_dssp -----EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGGGG------GSEEEE-S--S-----TT
T ss_pred CCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHhhh------hheeeecCCcCCceeCcc
Confidence 457889999999999999999999986422 2477877777777666666665432 233333210 10
Q ss_pred Ccc----hhH-----HHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHH---HHHHhCCCeEEEEeccccCCCCChhhH
Q 010062 155 TCS----QKI-----HNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALT---TEMEKNPEIFIQTGYPLDLPSGSLGSY 222 (519)
Q Consensus 155 ~~~----~K~-----~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv---~~l~~dp~vg~V~g~~~~~~~~~~~~~ 222 (519)
..+ .|. .+|..-+..- .++.++++.+|..+.||+++-+. ..+++||.+-+|++ |..+.. ...
T Consensus 166 ~~~~~~y~~IA~HYk~aL~~vF~~~--~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSa--wNdnG~--~~~ 239 (434)
T PF03071_consen 166 EKKFKGYYKIARHYKWALSQVFNKF--KYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISA--WNDNGK--EHF 239 (434)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHTS----SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES----TT-B--GGG
T ss_pred cccccchHHHHHHHHHHHHHHHHhc--CCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEc--cccCCc--ccc
Confidence 000 111 1333333322 46899999999999999776554 45677899999998 332211 000
Q ss_pred HHHhhccccccccccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCceeeeccCC
Q 010062 223 CIYEYHMPCSMGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVAVFPHPLA 302 (519)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~~~~~~~~ 302 (519)
.. ... +....++ .+..|=..+++|+.+ +++ -+.|.. .+ -|.-+-.-..+.|+....|......|-..
T Consensus 240 ~~-~~~-~~~lyRs-----dffpglGWml~r~~w--~el--~~~Wp~-~~-WDdwmR~~~~rkgR~cIrPeisRt~~fg~ 306 (434)
T PF03071_consen 240 VD-DSR-PSLLYRS-----DFFPGLGWMLTRELW--DEL--EPKWPK-AF-WDDWMRQPEQRKGRQCIRPEISRTYHFGK 306 (434)
T ss_dssp S--TT--TT-EEEE-----SS---SSEEEEHHHH--HHH--GGG--S-S--HHHHHTSHHHHTT-EEEEESSBSEEE--S
T ss_pred cc-CCC-ccceEec-----ccCCchHHHhhHHHH--Hhh--cccCCC-CC-chhhhcCccccCCCceeeccCCCccccCc
Confidence 00 000 0111111 133344578899999 443 245654 33 44444446667777777666654444433
Q ss_pred CCCCHHHHH
Q 010062 303 SDLSFGRYW 311 (519)
Q Consensus 303 ~~~~~~~~~ 311 (519)
...+..+++
T Consensus 307 ~G~s~g~~f 315 (434)
T PF03071_consen 307 KGVSNGQFF 315 (434)
T ss_dssp SSSS-THHH
T ss_pred CCcchHHHH
Confidence 344445555
No 85
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=96.86 E-value=0.011 Score=57.31 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=63.7
Q ss_pred HHHHHHHhccCCCCeEEEEEECCCC-CcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhc-cCCCcEEE
Q 010062 101 LNWRSQVTSLYGGPLEFLFVVESKE-DPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENM-HKDSKYVL 178 (519)
Q Consensus 101 ~~L~Sl~~q~yp~~~eiIvV~d~s~-D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a-~~~gd~vv 178 (519)
=||.|+.+|+-+ +|+.+|+.|+.. ++-.+.++++.+.+| +++++..++.. ....+...++.+ ....++++
T Consensus 46 ~~LpSl~~QTd~-dF~~lv~~~~~~P~~~~~rL~~l~~~~p---~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 117 (234)
T PF11316_consen 46 YCLPSLRAQTDQ-DFTWLVLFDDDLPEPYRERLRDLLADYP---QFRIVFRPPGP----HRDAMRRAINAARRDGADPVL 117 (234)
T ss_pred HHhhHHHhccCC-CeEEEEEECCCCCHHHHHHHHHHhccCC---CcEEEecCCch----HHHHHHHHHhhhccCCCCEEE
Confidence 389999999998 899888666554 445567888888887 46666654322 334455554322 12345544
Q ss_pred --EEcCCCccChHHHHHHHHHHH
Q 010062 179 --FLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 179 --~lDaD~~~~pd~L~~lv~~l~ 199 (519)
.+|+|+.++.|+++++-+..+
T Consensus 118 ~~RLDdDDAl~~dFV~rlr~~a~ 140 (234)
T PF11316_consen 118 QFRLDDDDALHRDFVARLRRAAA 140 (234)
T ss_pred EEEECCcchhhHHHHHHHHHHHH
Confidence 459999999999999999874
No 86
>KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.043 Score=55.29 Aligned_cols=207 Identities=17% Similarity=0.146 Sum_probs=116.7
Q ss_pred CCCCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEE-CCCCCcHH--HHHHHHHhhcCCCCceEEEEcCCCCCcc
Q 010062 81 IKLPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVV-ESKEDPAY--HSVLRLLQEFKDDVDAKVVVAGLSTTCS 157 (519)
Q Consensus 81 ~~~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~-d~s~D~t~--~i~~~l~~~~~~~~~v~vv~~~~~~~~~ 157 (519)
-+.|.+.+++|..++.........+++...-. +++++++- ..|.|+-. +.++.+++.++ +++.+.. +...+
T Consensus 226 i~~pgih~i~pl~gr~~~f~rf~q~~c~~~d~-~l~l~vv~f~~se~e~ak~e~~tslra~f~---~~q~l~l--ngeFS 299 (494)
T KOG3588|consen 226 IEDPGIHMIMPLRGRAAIFARFAQSICARGDD-RLALSVVYFGYSEDEMAKRETITSLRASFI---PVQFLGL--NGEFS 299 (494)
T ss_pred ccCCCceEEEeccchHHHhhhhhHHHhccCCC-ceEEEEEEecCCChHHHhhhHHHHHhhcCC---ceEEecc--cchhh
Confidence 35688999999999999999999998876544 67765554 44554432 34445666665 4444332 22222
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc--ccCCCCChhhH-----HHHhhccc
Q 010062 158 QKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYP--LDLPSGSLGSY-----CIYEYHMP 230 (519)
Q Consensus 158 ~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~--~~~~~~~~~~~-----~~~~~~~~ 230 (519)
.+.+|..|.+... ..-.+.|+|-|.....++|.+.-..-. |+.-+-.... .+.|. .+.+. ........
T Consensus 300 -Ra~aL~vGAe~~~-~nvLLFfcDVDi~FT~efL~rcr~Nt~--~gkqiyfPivFS~ynp~-ivy~~~~~~p~e~~~~~~ 374 (494)
T KOG3588|consen 300 -RAKALMVGAETLN-ANVLLFFCDVDIYFTTEFLNRCRLNTI--LGKQIYFPIVFSQYNPE-IVYEQDKPLPAEQQLVIK 374 (494)
T ss_pred -hhHHHHhhHHHhc-cceeEEEeccceeehHHHHHHHhhccC--CCceEEEEEEEeecCcc-eeecCCCCCchhHheeec
Confidence 3456888888874 345778899999999999998754432 4433322211 12221 11000 00000000
Q ss_pred cccccccCCCcccccccchhccHhhhccccccCcccCCCCCc-ccHHHHHHHHHhCCCcEE-ecCceeee--ccCCCCCC
Q 010062 231 CSMGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGY-SDDMTLAALAGAHNRLIT-SPPVAVFP--HPLASDLS 306 (519)
Q Consensus 231 ~~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~-~ED~~l~~~~~~~g~~v~-~~~~~~~~--~~~~~~~~ 306 (519)
.-.|+- ..|.+|.+..+|-+. -++||||.--. ++ .||.+|-+..-++|.++. .+..-+++ |+..+..+
T Consensus 375 ~~tGfw----RdfGfGmtc~yrsd~---~~vgGFD~~I~-GWG~EDV~Ly~K~v~~~l~viR~p~pGl~H~~H~~~C~~~ 446 (494)
T KOG3588|consen 375 KDTGFW----RDFGFGMTCQYRSDF---LTVGGFDMEIK-GWGGEDVDLYRKYVHSGLKVIRTPEPGLFHLWHPKRCDDN 446 (494)
T ss_pred cccccc----cccCCceeEEeeccc---eeecCcceeee-ccCcchHHHHHHHHhcCcEEEecCCCceEEeecccccCCC
Confidence 111221 125667666666554 45899995434 44 499999974444555544 44333333 44444333
No 87
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=96.67 E-value=0.0073 Score=59.78 Aligned_cols=102 Identities=7% Similarity=-0.035 Sum_probs=74.4
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEE------cCCCCCcch
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVV------AGLSTTCSQ 158 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~------~~~~~~~~~ 158 (519)
..+-.|=++||...|.+||+|.+.. =-|.|++=++++|+|.|++.+++.++|.. +.+.+ .......+.
T Consensus 88 ~~~~~iRvKnE~~tl~~si~S~Lpa----i~~gVI~yNdc~D~t~Eiil~fckkyP~f--ip~~Ypy~v~~~n~~~~~n~ 161 (347)
T PF06306_consen 88 NPWAFIRVKNEAMTLAESIESILPA----IDEGVIGYNDCTDGTEEIILEFCKKYPSF--IPIKYPYEVIIKNPKSEENS 161 (347)
T ss_pred CcceEEEEcchhhhHHHHHHHHHHH----HhccEEEeecCCCCHHHHHHHHHHhCccc--ccccCcchhhccCCchhhhh
Confidence 5788999999999999999999853 23778899999999999999999999974 44432 111111222
Q ss_pred hHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHH
Q 010062 159 KIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGA 193 (519)
Q Consensus 159 K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~ 193 (519)
..+--|..+... ++.+|++=+|+|....+.-|-+
T Consensus 162 l~~YYNy~ls~i-pk~~w~iKID~DhIy~~~KL~k 195 (347)
T PF06306_consen 162 LYNYYNYVLSFI-PKNEWAIKIDADHIYDTKKLYK 195 (347)
T ss_pred hhhhhhhhhccc-ccceEEEEeccceeecHHHHhh
Confidence 333333344433 2579999999999999987644
No 88
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=96.31 E-value=0.022 Score=57.39 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=58.6
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCC---CcH---HHHHHHHHhhcCCCCceEEEEcCC------
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKE---DPA---YHSVLRLLQEFKDDVDAKVVVAGL------ 152 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~---D~t---~~i~~~l~~~~~~~~~v~vv~~~~------ 152 (519)
..+||||++||+-.+.+-+ +. .-|.+.-||+|.|++. |.- .+.++++..--. + ++-+++...
T Consensus 51 ~maIVVP~KnE~l~lleGV---L~-gIPh~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~-r-~~~~vHQkDp~lA~A 124 (381)
T PF09488_consen 51 KMAIVVPCKNEKLKLLEGV---LS-GIPHDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLTR-R-QIIIVHQKDPGLAEA 124 (381)
T ss_dssp TEEEEEEESS--HHHHHHH---HH-CS-TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHCT----EEEEETT-HHHHHH
T ss_pred CcEEEEECCCCchhhhhhh---hh-cCCCCCeEEEEECCCCCCccHHHHHHHHHHHHHHhhc-C-ceEEEecCCHHHHHH
Confidence 6899999999996554433 32 2365788888888887 532 245555554322 2 444444211
Q ss_pred -------------CCCcchhHHHHHHHHHhccC-CCcEEEEEcCCCccChHHHHHHHHHH
Q 010062 153 -------------STTCSQKIHNQLVGVENMHK-DSKYVLFLDDDVRLHPGTIGALTTEM 198 (519)
Q Consensus 153 -------------~~~~~~K~~nl~~gl~~a~~-~gd~vv~lDaD~~~~pd~L~~lv~~l 198 (519)
..-++||.-.+..|+..|+. ..+||-|+|||...|. ...+-+..+
T Consensus 125 f~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiPG-aV~EYvk~y 183 (381)
T PF09488_consen 125 FKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIPG-AVNEYVKDY 183 (381)
T ss_dssp HHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-HH-HHHHHHHHH
T ss_pred HHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCcc-hHHHHHHHH
Confidence 11368999988888766532 3599999999998754 344444443
No 89
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=96.11 E-value=0.015 Score=58.19 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=65.6
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcH------HHHHHHHHhhcCCCCceEEEEc--------
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPA------YHSVLRLLQEFKDDVDAKVVVA-------- 150 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t------~~i~~~l~~~~~~~~~v~vv~~-------- 150 (519)
..+||||++||+-.+.+-+ +. .-|.+.-||+|.|++.++- .+.++++..- -++ ++-+++.
T Consensus 51 ~maIVVP~KdE~l~lleGV---L~-gIPh~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~-t~r-~~i~vHQkDp~la~A 124 (381)
T TIGR02460 51 KTAIVVPVKNEKLHLLEGV---LS-GIPHECPIIIVSNSKREPPDRFKMEVDLIRHFSNL-THR-KIIIIHQKDPALAEA 124 (381)
T ss_pred CcEEEEEcCCCchhHHhhH---hh-cCCCCCeEEEEeCCCCCChhHHHHHHHHHHHHHHh-hcC-ceEEEEcCCHHHHHH
Confidence 6899999999996554433 22 2365778888888766331 2334444332 112 3333331
Q ss_pred -----------CCCCCcchhHHHHHHHHHhccC-CCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 151 -----------GLSTTCSQKIHNQLVGVENMHK-DSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 151 -----------~~~~~~~~K~~nl~~gl~~a~~-~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
....-++||.-.+..|+..|+. ..+||-|+|||..+|. ...+-+..+.
T Consensus 125 f~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPG-aV~EYvk~yA 184 (381)
T TIGR02460 125 FKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPG-AVNEYVKIYA 184 (381)
T ss_pred HHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCc-hHHHHHHHHH
Confidence 1112368899888888766642 2499999999998865 3444444443
No 90
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=96.06 E-value=0.016 Score=58.43 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=65.6
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcH------HHHHHHHHhhcCCCCceEEEEc--------
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPA------YHSVLRLLQEFKDDVDAKVVVA-------- 150 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t------~~i~~~l~~~~~~~~~v~vv~~-------- 150 (519)
..+||||++||+-.+.+-+ +. .-|.+.-||+|.|++.++- .+.++++..- .++ ++-+++.
T Consensus 52 ~mAIVVP~KdE~l~lleGV---L~-gIPh~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~-t~r-~~i~vHQkDp~la~A 125 (393)
T PRK14503 52 RMAIVVPVKNERLKLLEGV---LK-GIPHECPIIVVSNSKREPPDRFKLEVDLVRHFYRL-TQR-PIIIVHQKDPGLAEA 125 (393)
T ss_pred CcEEEEEcCCCchhHHhhH---hh-cCCCCCeEEEEeCCCCCCchHHHHHHHHHHHHHhh-hcC-ceEEEEcCCHHHHHH
Confidence 6899999999996554433 22 2365778888888765331 2334444332 112 3333331
Q ss_pred -----------CCCCCcchhHHHHHHHHHhccC-CCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 151 -----------GLSTTCSQKIHNQLVGVENMHK-DSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 151 -----------~~~~~~~~K~~nl~~gl~~a~~-~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
....-++||.-.+..|+..|+. ..+||-|+|||..+|. ...+-+..+.
T Consensus 126 f~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPG-aV~EYvk~yA 185 (393)
T PRK14503 126 LKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPG-AVNEYVKIYA 185 (393)
T ss_pred HHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCc-hHHHHHHHHH
Confidence 1112368899888888766642 2499999999998864 3444455443
No 91
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=95.38 E-value=0.011 Score=47.09 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=32.6
Q ss_pred cccccchhccHhhhccccccCcccCCCCCc-ccHHHHHHHHHhCCCcEEecC
Q 010062 243 FLWGGCMMMHADDFRLDRYGVVSGLRDGGY-SDDMTLAALAGAHNRLITSPP 293 (519)
Q Consensus 243 ~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~-~ED~~l~~~~~~~g~~v~~~~ 293 (519)
..+|++++++|+.| .++||+++-.. ++ .||.|+..++...|.++...+
T Consensus 18 ~~~Gg~~~~~~~~f--~~vnGfde~f~-gWG~ED~Dl~~Rl~~~g~~~~~~~ 66 (78)
T PF02709_consen 18 NFFGGVFAISREDF--EKVNGFDERFW-GWGGEDDDLYNRLWKAGLKIVRVP 66 (78)
T ss_dssp T---SEEEEEHHHH--HHTTSS-SS-T-SCSSHHHHHHHHHHHTT---B-SS
T ss_pred CeeEEEEEEeHHHH--HHcCCCCcccc-ccCccHHHHHHHHHHcCCeEEecC
Confidence 66799999999999 77999998655 44 499999988887777666544
No 92
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=94.71 E-value=0.28 Score=46.14 Aligned_cols=181 Identities=17% Similarity=0.120 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHhccCCCCeEEEEEECCCC--CcHH-HHHHHHHhhcCCCCceEEEE-cCCCCCcchhHHHHHH-HHHhcc
Q 010062 97 EHNLLNWRSQVTSLYGGPLEFLFVVESKE--DPAY-HSVLRLLQEFKDDVDAKVVV-AGLSTTCSQKIHNQLV-GVENMH 171 (519)
Q Consensus 97 ~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~--D~t~-~i~~~l~~~~~~~~~v~vv~-~~~~~~~~~K~~nl~~-gl~~a~ 171 (519)
+.|+++..+...+.-. ..+++|+...+. |+.. +.+++=.++|.+ +-... .+.-.+...|.-+... ..+.+.
T Consensus 4 ~~IR~TW~~~~~~~~~-~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~D---il~~d~~D~y~nlt~K~~~~~~w~~~~c~ 79 (195)
T PF01762_consen 4 QAIRETWGNQRNFKGV-RVKVVFVVGESPNSDSDLQEALQEEAEKYGD---ILQGDFVDSYRNLTLKTLAGLKWASKHCP 79 (195)
T ss_pred HHHHHHHhcccccCCC-cEEEEEEEecCCCCcHHHHHHhhhhhhhcCc---eEeeecccccchhhHHHHHHHHHHHhhCC
Confidence 4567777666554443 688889888777 4432 223332344553 33222 2222234557654443 344453
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccC--CCCChhhHHHHhhccccccccccCCCcccccccch
Q 010062 172 KDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDL--PSGSLGSYCIYEYHMPCSMGFATGGKTFFLWGGCM 249 (519)
Q Consensus 172 ~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 249 (519)
+.+|++.+|+|+.+.++.|...+.....++.-..+.|..... +...-... .+..... ......+.+|.|++.
T Consensus 80 -~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~k---w~v~~~~--y~~~~yP~y~~G~~y 153 (195)
T PF01762_consen 80 -NAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSK---WYVSEEE--YPDDYYPPYCSGGGY 153 (195)
T ss_pred -chhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccC---ceeeeee--cccccCCCcCCCCeE
Confidence 479999999999999998888777761123223333312111 11100000 0000000 011112347789999
Q ss_pred hccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcE
Q 010062 250 MMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLI 289 (519)
Q Consensus 250 ~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v 289 (519)
++.+++.+. +--.......-..||..++..+++.|...
T Consensus 154 vls~~~v~~--i~~~~~~~~~~~~eDv~iGi~~~~~~i~~ 191 (195)
T PF01762_consen 154 VLSSDVVKR--IYKASSHTPFFPLEDVFIGILAEKLGIKP 191 (195)
T ss_pred EecHHHHHH--HHHHhhcCCCCCchHHHHHHHHHHCCCCc
Confidence 999998832 31111111113359999998887777543
No 93
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=94.65 E-value=0.16 Score=50.94 Aligned_cols=152 Identities=15% Similarity=0.157 Sum_probs=91.2
Q ss_pred cEEEEeeccCCchHHHHHHHHH---HhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHH
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQ---VTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIH 161 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl---~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~ 161 (519)
+|+||||-+|.+++|.-.|.-+ +.+.-- +|.|.||..-.+++-. .+|.
T Consensus 152 kvAIIIPfR~Re~HL~~~l~~LhP~LqrQrL-~y~iyVieQ~g~~~FN---------------------------RakL- 202 (372)
T KOG3916|consen 152 KVAIIIPFRNREEHLRYLLHHLHPFLQRQRL-DYRIYVIEQAGNKPFN---------------------------RAKL- 202 (372)
T ss_pred eeEEEeecccHHHHHHHHHHHhhHHHHhhhh-ceeEEEEEecCCCccc---------------------------HHHh-
Confidence 7999999999999887666554 433322 5788777665554310 0122
Q ss_pred HHHHHHHhcc--CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHH-HhhccccccccccC
Q 010062 162 NQLVGVENMH--KDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCI-YEYHMPCSMGFATG 238 (519)
Q Consensus 162 nl~~gl~~a~--~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 238 (519)
+|.|+..|- ..-|-++|-|-|-.+..| .+ +-.|.+. | +-+...+. +.|..
T Consensus 203 -~NVGf~eAlkd~~wdCfIFHDVDllPenD------------rN--lY~C~~~--P-RH~sva~dk~gy~L--------- 255 (372)
T KOG3916|consen 203 -LNVGFLEALKDYGWDCFIFHDVDLLPEND------------RN--LYGCPEQ--P-RHMSVALDKFGYRL--------- 255 (372)
T ss_pred -hhhHHHHHHHhcCCCEEEEecccccccCC------------CC--ccCCCCC--C-cchhhhhhhccccc---------
Confidence 233444332 256899999999887543 11 1111011 1 11111111 11111
Q ss_pred CCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEEecCce
Q 010062 239 GKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLITSPPVA 295 (519)
Q Consensus 239 ~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~~~~~~ 295 (519)
+. .-.+||-.++.++-| .++.||....-|=-+||=|+..+++..|.+|--++..
T Consensus 256 PY-~~~FGGVsalt~~qf--~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~~ 309 (372)
T KOG3916|consen 256 PY-KEYFGGVSALTKEQF--RKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPPE 309 (372)
T ss_pred cc-hhhhCchhhccHHHH--HHhcCCCchhcccCCcchHHHHHHHhcCceeecCCCc
Confidence 11 255689999999999 6698888644322259999999999999888877554
No 94
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=94.48 E-value=0.099 Score=57.81 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=65.4
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcH------HHHHHHHHhhcCCCCceEEEEc--------
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPA------YHSVLRLLQEFKDDVDAKVVVA-------- 150 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t------~~i~~~l~~~~~~~~~v~vv~~-------- 150 (519)
...||||++||+-.+.+-+ +. .-|.+.-||+|.|++.++- .+.++++..- .++ ++-+++.
T Consensus 56 ~~aivvp~k~e~~~~~~gv---l~-~ip~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~-~~~-~~~~vhq~dp~~a~a 129 (694)
T PRK14502 56 KMAIVLPIKDEDLKVFEGV---LS-GIPHDCLMIVISNSSKQEVDNFKNEKDIVNRFCRI-THR-QAIVVHQKNPELANA 129 (694)
T ss_pred CcEEEEEcCCCchhHHhhH---hh-cCCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHHh-hcC-ceEEEEcCCHHHHHH
Confidence 6899999999996554433 22 2365678888877775321 2334443332 112 3333331
Q ss_pred -----------CCCCCcchhHHHHHHHHHhccC-CCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 151 -----------GLSTTCSQKIHNQLVGVENMHK-DSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 151 -----------~~~~~~~~K~~nl~~gl~~a~~-~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
....-++||.-.+..|+..|+. ..+||-|+|||..+|.. ..+-+..+.
T Consensus 130 ~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~-v~ey~~~ya 189 (694)
T PRK14502 130 IADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGA-VWEYAKHFA 189 (694)
T ss_pred HHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCch-HHHHHHHHH
Confidence 1112368899888888876642 24999999999998654 444444443
No 95
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=94.21 E-value=0.15 Score=50.02 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=66.1
Q ss_pred EEEEeec-cCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHH
Q 010062 86 VTVVMPL-KGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQL 164 (519)
Q Consensus 86 VSVIIP~-~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~ 164 (519)
.||+|-+ |+..+.|.+.|+++....+- -||+||=++...+-.. .+.... + +.++++....+. .+|.-
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~~~~l--~~IvVvWn~~~~~P~~--~~~~~~--~-vpV~~~~~~~ns-----LnnRF 68 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLASSPSL--RKIVVVWNNPNPPPPS--SKWPST--G-VPVRVVRSSRNS-----LNNRF 68 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTTSTTE--EEEEEEEE-TS--THH--HHHT------S-EEEEEESSHH-----GGGGG
T ss_pred CEEEEEecccchHHHHHHHHHHHcCCCC--CeEEEEeCCCCCCCcc--cccCCC--C-ceEEEEecCCcc-----HHhcC
Confidence 4789999 99999999999999665442 4565554553332211 121111 1 367777654331 12222
Q ss_pred HHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 010062 165 VGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTG 209 (519)
Q Consensus 165 ~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g 209 (519)
.-.... ++|-|+.+|+|+.++++.|+...+..+++|+ -+|+-
T Consensus 69 ~p~~~i--~T~AVl~~DDDv~~~~~~l~faF~~W~~~pd-rlVGf 110 (247)
T PF09258_consen 69 LPDPEI--ETDAVLSLDDDVMLSCDELEFAFQVWREFPD-RLVGF 110 (247)
T ss_dssp S--TT----SSEEEEEETTEEE-HHHHHHHHHHHCCSTT-SEEES
T ss_pred cCcccc--CcceEEEecCCcccCHHHHHHHHHHHHhChh-heeCC
Confidence 233344 5799999999999999999999999988887 56654
No 96
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=93.61 E-value=0.13 Score=57.03 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=48.5
Q ss_pred ceEEEEcCCCCC--cchhHHHHHHHHHhc--cCCCcEEEEEcCCCc-cChHHHHHHHHHHHhCCC----eEEEEe
Q 010062 144 DAKVVVAGLSTT--CSQKIHNQLVGVENM--HKDSKYVLFLDDDVR-LHPGTIGALTTEMEKNPE----IFIQTG 209 (519)
Q Consensus 144 ~v~vv~~~~~~~--~~~K~~nl~~gl~~a--~~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~dp~----vg~V~g 209 (519)
.+-++.++++.+ .+.|++|+|.-++-+ -.+++||+-+|.|.. -+|+.+++.+-.|. ||+ ++.||-
T Consensus 167 ~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~-d~~~g~~~~~vQf 240 (720)
T PF03552_consen 167 MLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFM-DPKIGKKIAFVQF 240 (720)
T ss_pred eEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhc-cCCCCCeeEEEeC
Confidence 455666655544 578999998766533 136899999999995 57899999888886 477 888885
No 97
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=92.85 E-value=2.3 Score=38.11 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=65.5
Q ss_pred eeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHh
Q 010062 90 MPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVEN 169 (519)
Q Consensus 90 IP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~ 169 (519)
+|+ ++.+.++.+++.+.+.... +|+++... + ++.+. ...+ +++++.++... .|-..++..+++.
T Consensus 19 ~~i-~g~~li~~~l~~l~~~~~~---~Ivvv~~~--~---~~~~~-~~~~----~~~~v~~~~~~--~G~~~sl~~a~~~ 82 (160)
T PF12804_consen 19 LPI-GGKPLIERVLEALREAGVD---DIVVVTGE--E---EIYEY-LERY----GIKVVVDPEPG--QGPLASLLAALSQ 82 (160)
T ss_dssp SEE-TTEEHHHHHHHHHHHHTES---EEEEEEST--H---HHHHH-HTTT----TSEEEE-STSS--CSHHHHHHHHHHT
T ss_pred eeE-CCccHHHHHHHHhhccCCc---eEEEecCh--H---HHHHH-Hhcc----CceEEEecccc--CChHHHHHHHHHh
Confidence 556 7778899999998776422 66666655 2 12222 2221 67888775442 3456778888888
Q ss_pred ccCCCcEEEEEcCCCc-cChHHHHHHHHHHHhCC
Q 010062 170 MHKDSKYVLFLDDDVR-LHPGTIGALTTEMEKNP 202 (519)
Q Consensus 170 a~~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~dp 202 (519)
.. +.+.++++.+|.. ++++.++++++.+++++
T Consensus 83 ~~-~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~ 115 (160)
T PF12804_consen 83 LP-SSEPVLVLPCDQPFLSPELLRRLLEALEKSP 115 (160)
T ss_dssp ST-TSSEEEEEETTETTS-HHHHHHHHHHHHHTT
T ss_pred cc-cCCCcEEEeCCccccCHHHHHHHHHHHhccC
Confidence 74 5799999999995 69999999999998544
No 98
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=92.43 E-value=0.39 Score=46.04 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=71.4
Q ss_pred CchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCCC
Q 010062 95 FGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKDS 174 (519)
Q Consensus 95 e~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~g 174 (519)
..+-+..++++|....- -|+++|.++-. .++++++..+++- ..++++++.....| -...+..+.+.+ ++
T Consensus 30 gr~ii~~~i~~L~~~gi---~e~vvV~~g~~---~~lve~~l~~~~~--~~~iv~N~~y~ktN-~~~Sl~~akd~~--~~ 98 (239)
T COG1213 30 GREIIYRTIENLAKAGI---TEFVVVTNGYR---ADLVEEFLKKYPF--NAKIVINSDYEKTN-TGYSLLLAKDYM--DG 98 (239)
T ss_pred CeEeHHHHHHHHHHcCC---ceEEEEeccch---HHHHHHHHhcCCc--ceEEEeCCCcccCC-ceeEEeeehhhh--cC
Confidence 45679999999998754 48888876654 3567888888874 68898886654333 012355677777 45
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 010062 175 KYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQT 208 (519)
Q Consensus 175 d~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~ 208 (519)
+ ++++|+|+..+|..++.++++=. ++.++..
T Consensus 99 ~-fii~~sD~vye~~~~e~l~~a~~--~~li~d~ 129 (239)
T COG1213 99 R-FILVMSDHVYEPSILERLLEAPG--EGLIVDR 129 (239)
T ss_pred c-EEEEeCCEeecHHHHHHHHhCcC--CcEEEec
Confidence 5 77999999999999999987642 4444443
No 99
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=91.78 E-value=3.1 Score=40.57 Aligned_cols=123 Identities=14% Similarity=0.077 Sum_probs=71.3
Q ss_pred EEeeccCCchHHHHHHH-HHHh---ccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCC-CceEEEEcCCCCCc------
Q 010062 88 VVMPLKGFGEHNLLNWR-SQVT---SLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDD-VDAKVVVAGLSTTC------ 156 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~-Sl~~---q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~-~~v~vv~~~~~~~~------ 156 (519)
|-.-+||.++.|...+. ++++ .--|.+.-|-|++++|+|.|.+.++++....... ++-++...+.....
T Consensus 4 IA~~l~~~~~iL~~~~~~~ll~li~~LGp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~~~ 83 (241)
T PF11735_consen 4 IAANLYNNEDILPSLWGDALLELIRFLGPENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDEIERPP 83 (241)
T ss_pred EEEEcccCHhHHHHHHHHHHHHHHHHhCcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCcccccccccc
Confidence 34457888887776555 5443 3345567778899999999999999887443221 12233332111110
Q ss_pred --c-----hhHH--HHHHHHH---hccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 010062 157 --S-----QKIH--NQLVGVE---NMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPL 212 (519)
Q Consensus 157 --~-----~K~~--nl~~gl~---~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~ 212 (519)
. .+.+ +|.--.+ ....+.|-|+|+| |+...++-+-+++..-.. .+.+++++.-+
T Consensus 84 ~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~-~~~~~aCamDf 149 (241)
T PF11735_consen 84 RLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNR-GNYDMACAMDF 149 (241)
T ss_pred hhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCc-ccccchhhccc
Confidence 0 1222 2221111 1222457899999 888887766666665542 56788887555
No 100
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=91.40 E-value=1.6 Score=43.85 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=68.7
Q ss_pred CcEEEEeeccCC--chHHHHHHHHHHhccCCCC---eEEEEEECCCCCcH--HHHHHHHHhhcCCCC---ceEEEEcCCC
Q 010062 84 PRVTVVMPLKGF--GEHNLLNWRSQVTSLYGGP---LEFLFVVESKEDPA--YHSVLRLLQEFKDDV---DAKVVVAGLS 153 (519)
Q Consensus 84 P~VSVIIP~~ne--~~~L~~~L~Sl~~q~yp~~---~eiIvV~d~s~D~t--~~i~~~l~~~~~~~~---~v~vv~~~~~ 153 (519)
++++|=||+-.+ +..|.++|+|++....|.+ .-|+|.. ..+|++ ..+++++..+++..+ .+.++..+..
T Consensus 52 ~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVll-Ad~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~ 130 (297)
T PF04666_consen 52 KKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLL-ADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPS 130 (297)
T ss_pred CeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEe-cCCChhhhHHHHHHHHHHhHHHHHhCceEEEecccc
Confidence 358999997554 4689999999998877643 2222222 333443 345555555443211 2444443221
Q ss_pred C-----------C-------cchhHHHHH--HHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 154 T-----------T-------CSQKIHNQL--VGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 154 ~-----------~-------~~~K~~nl~--~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
- + +..|- |+. ..+..|...++|.+.+.+|+...|+|+..+...+.+
T Consensus 131 ~Yp~l~~l~~~~~d~~~rv~wrsKq-~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~~~v~~ 196 (297)
T PF04666_consen 131 YYPDLDNLKRNFGDSEERVRWRSKQ-NLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIKRFVEA 196 (297)
T ss_pred cCCChhhhhhcccChhhhhhHHHhh-cccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHHHHHHH
Confidence 0 0 11111 111 223344446899999999999999999999988865
No 101
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=91.35 E-value=2.4 Score=40.36 Aligned_cols=97 Identities=18% Similarity=0.101 Sum_probs=62.7
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+-| .+.+..+++++.+..- -++++|..... +.+++...++ +++++..... .+...++..++.
T Consensus 20 l~~v~g-kpli~~~i~~l~~~~i---~~i~iv~~~~~----~~i~~~~~~~----~~~~~~~~~~---~g~~~ai~~a~~ 84 (229)
T cd02540 20 LHPLAG-KPMLEHVLDAARALGP---DRIVVVVGHGA----EQVKKALANP----NVEFVLQEEQ---LGTGHAVKQALP 84 (229)
T ss_pred cceeCC-ccHHHHHHHHHHhCCC---CeEEEEECCCH----HHHHHHhCCC----CcEEEECCCC---CCCHHHHHHHHH
Confidence 455555 4899999999987542 36666664332 2233333321 5666665433 235667777777
Q ss_pred hccCCCcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 169 NMHKDSKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
....+.|.++++++|. .+.++.+.++++.+++
T Consensus 85 ~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~ 117 (229)
T cd02540 85 ALKDFEGDVLVLYGDVPLITPETLQRLLEAHRE 117 (229)
T ss_pred hhccCCCeEEEEeCCccccCHHHHHHHHHHHHh
Confidence 6631258899999998 5788999999998865
No 102
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.13 E-value=2.2 Score=39.05 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=59.2
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKD 173 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~ 173 (519)
+..+.++..++.+.... --++++|.+...+ +. .+..... .+.++...... .|-..++..|++.+...
T Consensus 24 ~g~~li~~~i~~l~~~~---~~~i~vv~~~~~~---~~-~~~~~~~----~~~~~~~~~~~--~G~~~~i~~al~~~~~~ 90 (186)
T cd04182 24 DGKPLLRHALDAALAAG---LSRVIVVLGAEAD---AV-RAALAGL----PVVVVINPDWE--EGMSSSLAAGLEALPAD 90 (186)
T ss_pred CCeeHHHHHHHHHHhCC---CCcEEEECCCcHH---HH-HHHhcCC----CeEEEeCCChh--hCHHHHHHHHHHhcccc
Confidence 45678888999887652 1256555544322 11 2212111 45555543321 24456677888877322
Q ss_pred CcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 174 SKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 174 gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
.|+++++++|. .++++.++++++.+.+
T Consensus 91 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 118 (186)
T cd04182 91 ADAVLILLADQPLVTAETLRALIDAFRE 118 (186)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 68999999999 5799999999998874
No 103
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=90.99 E-value=5.2 Score=37.07 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=61.0
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhcc-C
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMH-K 172 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~-~ 172 (519)
+..+.+..+++.+++... -++++|.+.. +...+.+.+...+. . ++.++.++... .|....+..|++++. .
T Consensus 24 ~g~~ll~~~i~~~~~~~~---~~i~vv~~~~-~~~~~~~~~~~~~~--~-~~~~~~~~~~~--~G~~~si~~gl~~~~~~ 94 (190)
T TIGR03202 24 GETTLGSASLKTALSSRL---SKVIVVIGEK-YAHLSWLDPYLLAD--E-RIMLVCCRDAC--EGQAHSLKCGLRKAEAM 94 (190)
T ss_pred CCccHHHHHHHHHHhCCC---CcEEEEeCCc-cchhhhhhHhhhcC--C-CeEEEECCChh--hhHHHHHHHHHHHhccC
Confidence 557788888887765422 2666666543 32222222211111 1 45655543221 234567778888752 2
Q ss_pred CCcEEEEEcCCCc-cChHHHHHHHHHHHhCCC
Q 010062 173 DSKYVLFLDDDVR-LHPGTIGALTTEMEKNPE 203 (519)
Q Consensus 173 ~gd~vv~lDaD~~-~~pd~L~~lv~~l~~dp~ 203 (519)
+.|+++++++|.- ++++.+.++++.+++++.
T Consensus 95 ~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 95 GADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 4689999999996 799999999998865343
No 104
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=90.33 E-value=2.5 Score=38.93 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=62.3
Q ss_pred eeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH-
Q 010062 90 MPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE- 168 (519)
Q Consensus 90 IP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~- 168 (519)
+|+ +..+.+...++.+.+... -++++|.+...+ ++.+++...+ +++++...... .|-..++..|++
T Consensus 20 l~~-~g~pll~~~i~~l~~~~~---~~iivv~~~~~~---~~~~~~~~~~----~v~~v~~~~~~--~g~~~si~~~l~~ 86 (188)
T TIGR03310 20 LPY-KGKTILEHVVDNALRLFF---DEVILVLGHEAD---ELVALLANHS----NITLVHNPQYA--EGQSSSIKLGLEL 86 (188)
T ss_pred ccc-CCeeHHHHHHHHHHHcCC---CcEEEEeCCcHH---HHHHHhccCC----CeEEEECcChh--cCHHHHHHHHhcC
Confidence 344 457789999988886542 266666555432 2233332221 56766654321 123456666776
Q ss_pred hccCCCcEEEEEcCCC-ccChHHHHHHHHHHHhCCC
Q 010062 169 NMHKDSKYVLFLDDDV-RLHPGTIGALTTEMEKNPE 203 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~-~~~pd~L~~lv~~l~~dp~ 203 (519)
.. +.|.++++++|. .++++.++++++.+.+++.
T Consensus 87 ~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 120 (188)
T TIGR03310 87 PV--QSDGYLFLLGDQPFVTPDIIQLLLEAFALKND 120 (188)
T ss_pred CC--CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCC
Confidence 33 468999999999 4799999999998765444
No 105
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=89.00 E-value=8.4 Score=36.99 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=56.8
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKD 173 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~ 173 (519)
+..+.+...++++.+...- -+++++.++ + .+++..+++ +++++...... ..+.. .+..+++.. +
T Consensus 25 ~GkPli~~~i~~l~~~~~~--~~ivv~t~~--~----~i~~~~~~~----~~~v~~~~~~~-~~g~~-~~~~a~~~~--~ 88 (238)
T PRK13368 25 LGKPMIQHVYERAAQAAGV--EEVYVATDD--Q----RIEDAVEAF----GGKVVMTSDDH-LSGTD-RLAEVMLKI--E 88 (238)
T ss_pred CCcCHHHHHHHHHHhcCCC--CeEEEECCh--H----HHHHHHHHc----CCeEEecCccC-CCccH-HHHHHHHhC--C
Confidence 3467888899988876222 255554432 2 233434443 34444433221 11222 234455555 4
Q ss_pred CcEEEEEcCCC-ccChHHHHHHHHHHHhCCCeEE
Q 010062 174 SKYVLFLDDDV-RLHPGTIGALTTEMEKNPEIFI 206 (519)
Q Consensus 174 gd~vv~lDaD~-~~~pd~L~~lv~~l~~dp~vg~ 206 (519)
.|.++++++|. .+.++.+.++++.+.+++...+
T Consensus 89 ~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 122 (238)
T PRK13368 89 ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINV 122 (238)
T ss_pred CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccc
Confidence 58999999999 5889999999998865443333
No 106
>PLN02917 CMP-KDO synthetase
Probab=88.78 E-value=9.3 Score=38.43 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCCCc
Q 010062 96 GEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKDSK 175 (519)
Q Consensus 96 ~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~gd 175 (519)
.+.+...++.+...... + ++ +|..+ ++ ++ ++...++ +++++...... .++-.+. ..+++....+.|
T Consensus 72 kPLL~~vi~~a~~~~~~-~-~V-VV~~~-~e---~I-~~~~~~~----~v~vi~~~~~~-~~GT~~~-~~a~~~l~~~~d 137 (293)
T PLN02917 72 KPMIQRTWERAKLATTL-D-HI-VVATD-DE---RI-AECCRGF----GADVIMTSESC-RNGTERC-NEALKKLEKKYD 137 (293)
T ss_pred EEHHHHHHHHHHcCCCC-C-EE-EEECC-hH---HH-HHHHHHc----CCEEEeCCccc-CCchHHH-HHHHHhccCCCC
Confidence 45778888888765422 2 34 44322 22 22 2333332 35555432221 1122222 356665533468
Q ss_pred EEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEE
Q 010062 176 YVLFLDDDVR-LHPGTIGALTTEMEKNPEIFIQT 208 (519)
Q Consensus 176 ~vv~lDaD~~-~~pd~L~~lv~~l~~dp~vg~V~ 208 (519)
+++++++|.- ++++.|.++++.+.++++..+.+
T Consensus 138 ~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t 171 (293)
T PLN02917 138 IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST 171 (293)
T ss_pred EEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 9999999997 79999999999887555444433
No 107
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=88.41 E-value=20 Score=36.99 Aligned_cols=213 Identities=15% Similarity=0.110 Sum_probs=112.3
Q ss_pred EEEEeeccCCchHHHHHHHHHHhc-cCCCCeEEEEEECCC-CCcH-HH----------------HHHHHHhh-----cC-
Q 010062 86 VTVVMPLKGFGEHNLLNWRSQVTS-LYGGPLEFLFVVESK-EDPA-YH----------------SVLRLLQE-----FK- 140 (519)
Q Consensus 86 VSVIIP~~ne~~~L~~~L~Sl~~q-~yp~~~eiIvV~d~s-~D~t-~~----------------i~~~l~~~-----~~- 140 (519)
|=|-|..|-.. ....+|.+++++ .+|..+-+-||+... +|+. .. ....+... .+
T Consensus 2 IFvsiasyRD~-~c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (343)
T PF11397_consen 2 IFVSIASYRDP-ECAPTLKDLFARATNPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEWPD 80 (343)
T ss_pred EEEEEeeecCc-hHHHHHHHHHHhcCCCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccccccccc
Confidence 44667778774 588999998887 578556666666532 2222 10 01111111 11
Q ss_pred -----CCCceEEEEcCCCCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeccccC
Q 010062 141 -----DDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKN-PEIFIQTGYPLDL 214 (519)
Q Consensus 141 -----~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~d-p~vg~V~g~~~~~ 214 (519)
...+|+++..+.... .|-..|-..+-+..+ .-+|.+-+||.++..++|=..|++.+++- ..-++.++||-..
T Consensus 81 ~~~~~~~~~Ir~~~~~~~~a-~Gp~~AR~la~~l~~-gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~~ 158 (343)
T PF11397_consen 81 GALCLRSDQIRVIRVDASEA-RGPCWARYLAQKLYR-GEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPGY 158 (343)
T ss_pred ccccccCCeEEEEEeCHHHC-cChHHHHHHHHHHhC-CCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCCc
Confidence 112577766433221 122333333444443 35899999999999999988888887542 3457778766432
Q ss_pred CC-C---Chh----hH-HHHhhc---ccccccccc-------CCCcccccccchhccHhhhccccccCcccCCCCCcccH
Q 010062 215 PS-G---SLG----SY-CIYEYH---MPCSMGFAT-------GGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDD 275 (519)
Q Consensus 215 ~~-~---~~~----~~-~~~~~~---~~~~~~~~~-------~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED 275 (519)
.. + ... .. +...+. .....+... .+.....+++...|-+.-+. .++...+.+..--.+|.
T Consensus 159 ~~~~~~~~~~~~~~~~lc~~~~~~~g~~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~-~eVP~DP~lp~lF~GEE 237 (343)
T PF11397_consen 159 EPDGGQPEPEKTTVPRLCAARFGPDGMVRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFV-REVPYDPHLPFLFDGEE 237 (343)
T ss_pred ccccCCccccCCcccEEEEeEECCCCcEeecceecccccccCCCeeeceecccEEEcchhhe-ecCCCCCCcccccccHH
Confidence 22 1 000 00 111110 000001000 11222344555555555442 22332222321134688
Q ss_pred HHHHHHHHhCCCcEEecCceeeeccCC
Q 010062 276 MTLAALAGAHNRLITSPPVAVFPHPLA 302 (519)
Q Consensus 276 ~~l~~~~~~~g~~v~~~~~~~~~~~~~ 302 (519)
+.++.++--.|+.++.|+..+..|...
T Consensus 238 ~~~aaRlwT~GYD~Y~P~~~v~~H~Y~ 264 (343)
T PF11397_consen 238 ISMAARLWTHGYDFYSPTRNVLFHLYS 264 (343)
T ss_pred HHHHHHHHHcCCccccCCCceeEEEcc
Confidence 988888888899999998887766543
No 108
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=88.32 E-value=9.3 Score=35.54 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=39.0
Q ss_pred ceEEEEcCCCCCcchhHHHHHHHHHhccCCCcEEEEEcCCCc-cChHHHHHHHHHHHh
Q 010062 144 DAKVVVAGLSTTCSQKIHNQLVGVENMHKDSKYVLFLDDDVR-LHPGTIGALTTEMEK 200 (519)
Q Consensus 144 ~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~ 200 (519)
+++++.++.. |-...+..|+++...+++.++++-+|.- ++++.++++++.+++
T Consensus 65 ~v~~i~~~~~----G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~ 118 (195)
T TIGR03552 65 GAPVLRDPGP----GLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE 118 (195)
T ss_pred CCEEEecCCC----CHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc
Confidence 4666665432 4566777787765434579999999986 799999999998863
No 109
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=88.14 E-value=2 Score=37.73 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=44.5
Q ss_pred CcEEEEeeccCCchHHHHHHHHH---H-hccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchh
Q 010062 84 PRVTVVMPLKGFGEHNLLNWRSQ---V-TSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQK 159 (519)
Q Consensus 84 P~VSVIIP~~ne~~~L~~~L~Sl---~-~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K 159 (519)
-+|+||||-+|.+++|...|..+ + +|.- +|.|.||....+.+ . . |
T Consensus 47 ~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~--~y~I~vieQ~~~~~-F--------------------------N--R 95 (136)
T PF13733_consen 47 HKVAIIIPYRDREEHLRIFLPHLHPFLQRQQL--DYRIFVIEQVDNGP-F--------------------------N--R 95 (136)
T ss_dssp -EEEEEEEESS-HHHHHHHHHHHHHHHHHTT---EEEEEEEEE-SSS--------------------------------H
T ss_pred cceEEEEEeCCHHHHHHHHHHHHHHHHhhCcc--eEEEEEEeeccCCC-C--------------------------c--h
Confidence 38999999999999888877654 3 3432 68887766554321 1 0 2
Q ss_pred HHHHHHHHHhccC--CCcEEEEEcCCCccChH
Q 010062 160 IHNQLVGVENMHK--DSKYVLFLDDDVRLHPG 189 (519)
Q Consensus 160 ~~nl~~gl~~a~~--~gd~vv~lDaD~~~~pd 189 (519)
+.=+|.|+..|.. +.|.++|=|-|..+..+
T Consensus 96 g~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 96 GKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp HHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred hhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 2223445554432 46999999999987654
No 110
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=87.14 E-value=9.8 Score=38.13 Aligned_cols=125 Identities=15% Similarity=0.086 Sum_probs=65.6
Q ss_pred CCcEEEEeeccCCchHHHHH---HHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcch-
Q 010062 83 LPRVTVVMPLKGFGEHNLLN---WRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQ- 158 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~~L~~~---L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~- 158 (519)
.|.|-||-|+|+......+. -.+|. + -| ++.-|+|.|++. .+ ..+..+.++-.- .-+.+....+.+...
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~-~-V~-nLhWIVVEd~~~-~~-p~v~~~L~rtgl--~ythl~~~t~~~~~~~ 158 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLR-L-VP-NLHWIVVEDGEG-TT-PEVSGILRRTGL--PYTHLVHKTPMGYKAR 158 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHh-h-cC-CeeEEEEecCCC-CC-HHHHHHHHHcCC--ceEEEeccCCCCCccc
Confidence 67888999999998533332 22222 1 35 788899988852 11 223333443321 222233222222111
Q ss_pred -hHHHHHHHHHhcc-------CCCcEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccCC
Q 010062 159 -KIHNQLVGVENMH-------KDSKYVLFLDDDVRLHPGTIGALTTEMEKN--PEIFIQTGYPLDLP 215 (519)
Q Consensus 159 -K~~nl~~gl~~a~-------~~gd~vv~lDaD~~~~pd~L~~lv~~l~~d--p~vg~V~g~~~~~~ 215 (519)
...+-|.|++..+ ...-+|-|.|+|..++-+...+ ++....- =-+|.+++.+...|
T Consensus 159 rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v~~~gvWpVg~vgg~~vE~P 224 (330)
T KOG1476|consen 159 RGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNVKKFGVWPVGLVGGARVEGP 224 (330)
T ss_pred cchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-HhccceeeeEeeeecCCeeeecc
Confidence 1334444554442 2346999999999999887777 3433320 11444555444444
No 111
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=86.79 E-value=7.7 Score=37.06 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=58.9
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+.|. +.+..+|+++..+.. -++++|... .....+.+++....... +++++..... ..|-..++..+..
T Consensus 23 ll~i~g~-pli~~~l~~l~~~g~---~~ivvv~~~-~~~~~~~~~~~~~~~~~--~~~i~~~~~~--~~g~~~~l~~a~~ 93 (231)
T cd04183 23 LIEVDGK-PMIEWVIESLAKIFD---SRFIFICRD-EHNTKFHLDESLKLLAP--NATVVELDGE--TLGAACTVLLAAD 93 (231)
T ss_pred eeEECCE-EHHHHHHHhhhccCC---ceEEEEECh-HHhhhhhHHHHHHHhCC--CCEEEEeCCC--CCcHHHHHHHHHh
Confidence 4566665 889999999987642 255555532 21111222222222221 4555444322 2234566666766
Q ss_pred hccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 010062 169 NMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQT 208 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~ 208 (519)
... ..+.++++++|...+.+....+..+.+.+....+++
T Consensus 94 ~l~-~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~ 132 (231)
T cd04183 94 LID-NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLT 132 (231)
T ss_pred hcC-CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEE
Confidence 652 136677899999998886655444333323333443
No 112
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=86.62 E-value=7.1 Score=36.26 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=55.5
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKD 173 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~ 173 (519)
+..+.+..+++.+. ... -++++|.+.. . +.. . +. .++++..... +..+-...+..|++.. +
T Consensus 28 ~g~~ll~~~i~~l~-~~~---~~i~vv~~~~---~-~~~---~-~~----~~~~v~~~~~-~~~g~~~~i~~~l~~~--~ 88 (193)
T PRK00317 28 NGKPLIQHVIERLA-PQV---DEIVINANRN---L-ARY---A-AF----GLPVIPDSLA-DFPGPLAGILAGLKQA--R 88 (193)
T ss_pred CCEEHHHHHHHHHh-hhC---CEEEEECCCC---h-HHH---H-hc----CCcEEeCCCC-CCCCCHHHHHHHHHhc--C
Confidence 56778899999886 222 2555553321 1 111 1 11 3455544322 2233455677788866 5
Q ss_pred CcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 174 SKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 174 gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
.|+++++++|. .++++.++++++.+.+
T Consensus 89 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 89 TEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred CCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 69999999999 5799999999998764
No 113
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=86.55 E-value=7.2 Score=39.65 Aligned_cols=178 Identities=13% Similarity=0.041 Sum_probs=98.0
Q ss_pred CCCcEEEEeeccCCchHHHHHHHHHHhccCCC-CeEEEEEECCCCCcH-HHHHHHHHhh-----cCCCCceEEEEcCCCC
Q 010062 82 KLPRVTVVMPLKGFGEHNLLNWRSQVTSLYGG-PLEFLFVVESKEDPA-YHSVLRLLQE-----FKDDVDAKVVVAGLST 154 (519)
Q Consensus 82 ~~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~-~~eiIvV~d~s~D~t-~~i~~~l~~~-----~~~~~~v~vv~~~~~~ 154 (519)
..|.+.|++=.+|..+.+++|++.++.+. |. +-+-|+|..|.++.+ .+.++.+-.. +|......+.+.++..
T Consensus 65 ~~~v~pvvVf~csR~~~lr~~v~kll~yr-PsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~~~~ 143 (411)
T KOG1413|consen 65 WPPVIPVVVFACSRADALRRHVKKLLEYR-PSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEISVPPRHK 143 (411)
T ss_pred CCCceeEEEEecCcHHHHHHHHHHHHHhC-cchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccccCCccc
Confidence 35678899999999999999999999887 53 233355555555443 3444443222 1210011222111111
Q ss_pred --CcchhH-----HHHHHHHHhccCCCcEEEEEcCCCccChHHHHH---HHHHHHhCCCeEEEEeccccCCCC-ChhhHH
Q 010062 155 --TCSQKI-----HNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGA---LTTEMEKNPEIFIQTGYPLDLPSG-SLGSYC 223 (519)
Q Consensus 155 --~~~~K~-----~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~---lv~~l~~dp~vg~V~g~~~~~~~~-~~~~~~ 223 (519)
..-.|+ .++++.+..- +.+.++++-+|--+.||+..- ....++.||.+=+|+. +..... ......
T Consensus 144 k~~~Yy~IarHYkwAL~q~F~~~--~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsa--WNDNGk~~~Id~~ 219 (411)
T KOG1413|consen 144 KFNAYYKIARHYKWALNQLFIVF--RESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSA--WNDNGKKQTIDST 219 (411)
T ss_pred ccchhHHHHHHHHHHHhhHHhhc--CCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeee--eccCCCccccccc
Confidence 111121 2555555544 578999999999999986654 4455677898888877 333211 110000
Q ss_pred HHhhccccccccccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHH
Q 010062 224 IYEYHMPCSMGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLA 279 (519)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~ 279 (519)
+ +....+ +.|.-|=+-++.++.+++ . -+.|.. ++=||...-
T Consensus 220 ~-----~~~lYR-----tDFFpGLGWml~~~~W~E--L--sp~wP~-~fWDDWmr~ 260 (411)
T KOG1413|consen 220 R-----PSLLYR-----TDFFPGLGWMLTKKLWEE--L--SPKWPV-AFWDDWMRI 260 (411)
T ss_pred c-----cchhhh-----ccccccchHHHHHHHHHh--h--CCCCcc-cchhhhhhc
Confidence 0 001111 124456667788888833 2 234544 566777543
No 114
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=86.51 E-value=1.5 Score=45.19 Aligned_cols=110 Identities=18% Similarity=0.103 Sum_probs=70.7
Q ss_pred CcEEEEeeccCCchHHHHHHHHHHhccCCCC-eEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEE--cCCC----CCc
Q 010062 84 PRVTVVMPLKGFGEHNLLNWRSQVTSLYGGP-LEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVV--AGLS----TTC 156 (519)
Q Consensus 84 P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~-~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~--~~~~----~~~ 156 (519)
|.|-+.+-++|-...+.-.+..+-++|||.. .-|-+.+|.+.|.+.+..+++.+..... .-+|.. ...+ .+.
T Consensus 3 ptvl~alL~rn~ah~lp~Flg~le~~Dypk~r~aiw~~~dh~~d~~ie~freWL~nv~~~-y~~V~~e~~~e~~s~~d~~ 81 (568)
T KOG4179|consen 3 PTVLCALLFRNFAHSLPLFLGELEEGDYPKIRPAIWIGVDHEHDHAIEYFREWLENVGDL-YHRVKWEPFIEPKSYPDEH 81 (568)
T ss_pred ceeehHHHHHHHHhhhhhccCChhccCCcccccceEEecCccccchHHHHHHHHHhcCCc-cceeEEEecCCccccCccc
Confidence 4566667778888888888887888999954 4566778899999999999988765432 222222 1111 111
Q ss_pred ch--------------hHHHHHHHHHhccCCCcEEEEEcCCCcc-ChHHHHHHHHH
Q 010062 157 SQ--------------KIHNQLVGVENMHKDSKYVLFLDDDVRL-HPGTIGALTTE 197 (519)
Q Consensus 157 ~~--------------K~~nl~~gl~~a~~~gd~vv~lDaD~~~-~pd~L~~lv~~ 197 (519)
+. |-.+++.+=.- -.||++|.|.|+.+ .+|.|.-+++.
T Consensus 82 ~pk~W~~sr~q~lm~lKeea~~~~r~~---~adyilf~d~d~lLts~dTl~llm~l 134 (568)
T KOG4179|consen 82 GPKHWPDSRFQHLMSLKEEALNWARSG---WADYILFKDEDNLLTSGDTLPLLMNL 134 (568)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhh---hcceeEEeehhheeeCCchHhHHHhc
Confidence 11 21222222111 25999999999986 67888776643
No 115
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=86.45 E-value=11 Score=35.59 Aligned_cols=101 Identities=18% Similarity=0.153 Sum_probs=62.0
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|. +..+.+..+++++...... -++++|.++... +..+.+....... .+.++..+ .+....+..|++
T Consensus 22 l~~i-~Gkpll~~~i~~l~~~~~~--~~ivVv~~~~~~---~~~~~~~~~~~~~-~~~~~~~~-----~~~~~si~~al~ 89 (218)
T cd02516 22 FLEL-GGKPVLEHTLEAFLAHPAI--DEIVVVVPPDDI---DLAKELAKYGLSK-VVKIVEGG-----ATRQDSVLNGLK 89 (218)
T ss_pred eeEE-CCeEHHHHHHHHHhcCCCC--CEEEEEeChhHH---HHHHHHHhcccCC-CeEEECCc-----hHHHHHHHHHHH
Confidence 4454 4568899999999875432 256665554332 2222221111111 34443322 134667888888
Q ss_pred hcc-CCCcEEEEEcCCCc-cChHHHHHHHHHHHhC
Q 010062 169 NMH-KDSKYVLFLDDDVR-LHPGTIGALTTEMEKN 201 (519)
Q Consensus 169 ~a~-~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~d 201 (519)
+.. .+.|.++++++|.- ++++.++++++.++++
T Consensus 90 ~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~ 124 (218)
T cd02516 90 ALPDADPDIVLIHDAARPFVSPELIDRLIDALKEY 124 (218)
T ss_pred hcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhC
Confidence 763 24689999999986 7999999999998753
No 116
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=86.11 E-value=7.2 Score=36.99 Aligned_cols=98 Identities=7% Similarity=-0.017 Sum_probs=57.5
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+-+. +.+...|+++.+.... +++++.....+ ++.+.+..+.. ++++..........+-.+++..+.+
T Consensus 24 llpi~g~-~li~~~l~~l~~~gi~---~i~iv~~~~~~---~i~~~~~~~~~---~~~i~~~~~~~~~~g~~~~l~~~~~ 93 (221)
T cd06422 24 LVPVAGK-PLIDHALDRLAAAGIR---RIVVNTHHLAD---QIEAHLGDSRF---GLRITISDEPDELLETGGGIKKALP 93 (221)
T ss_pred eeeECCE-EHHHHHHHHHHHCCCC---EEEEEccCCHH---HHHHHHhcccC---CceEEEecCCCcccccHHHHHHHHH
Confidence 5566666 8999999999987544 56555544322 22222222112 3444443222112234566777877
Q ss_pred hccCCCcEEEEEcCCCccChHHHHHHHHHH
Q 010062 169 NMHKDSKYVLFLDDDVRLHPGTIGALTTEM 198 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l 198 (519)
.. +.|.++++++|...+.+....+..+.
T Consensus 94 ~~--~~~~~lv~~~D~i~~~~~~~~~~~~~ 121 (221)
T cd06422 94 LL--GDEPFLVVNGDILWDGDLAPLLLLHA 121 (221)
T ss_pred hc--CCCCEEEEeCCeeeCCCHHHHHHHHH
Confidence 76 33778899999999888665544443
No 117
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=86.11 E-value=13 Score=35.73 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=59.3
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+ +..+.+...++.+.+..-. -+++++.+. +.+++...++ +++++...... ..+..+ +..+++
T Consensus 20 l~~i-~gkpll~~~l~~l~~~~~i--~~ivvv~~~------~~i~~~~~~~----~~~~~~~~~~~-~~gt~~-~~~~~~ 84 (239)
T cd02517 20 LADI-AGKPMIQHVYERAKKAKGL--DEVVVATDD------ERIADAVESF----GGKVVMTSPDH-PSGTDR-IAEVAE 84 (239)
T ss_pred Cccc-CCcCHHHHHHHHHHhCCCC--CEEEEECCc------HHHHHHHHHc----CCEEEEcCccc-CchhHH-HHHHHH
Confidence 4444 4567899999988876221 256555431 2233333333 35555543221 122222 444555
Q ss_pred hccCCCcEEEEEcCCC-ccChHHHHHHHHHHHhCCCeE
Q 010062 169 NMHKDSKYVLFLDDDV-RLHPGTIGALTTEMEKNPEIF 205 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~-~~~pd~L~~lv~~l~~dp~vg 205 (519)
......|.++++++|. .++++.|+.+++.+.++++.+
T Consensus 85 ~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~ 122 (239)
T cd02517 85 KLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVD 122 (239)
T ss_pred hcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCC
Confidence 5521138899999999 789999999999886543443
No 118
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=85.90 E-value=7.9 Score=37.12 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=58.4
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+.|. +.+...++++..+... ++++|.....+...+.++ +.+...+++++...+.. ..|-.+++..+.+
T Consensus 25 llpv~g~-pli~~~l~~l~~~g~~---~v~iv~~~~~~~~~~~l~----~~~~~~~~~i~~~~~~~-~~G~~~al~~a~~ 95 (233)
T cd06425 25 LVEFCNK-PMIEHQIEALAKAGVK---EIILAVNYRPEDMVPFLK----EYEKKLGIKITFSIETE-PLGTAGPLALARD 95 (233)
T ss_pred cCeECCc-chHHHHHHHHHHCCCc---EEEEEeeeCHHHHHHHHh----cccccCCeEEEeccCCC-CCccHHHHHHHHH
Confidence 4566665 8899999999887543 566666544433222222 22111145555432221 2334566777777
Q ss_pred hccC-CCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 169 NMHK-DSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 169 ~a~~-~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
.... +.+ ++++++|...+.+ +.++++.+++
T Consensus 96 ~~~~~~~~-~lv~~~D~~~~~~-~~~~~~~~~~ 126 (233)
T cd06425 96 LLGDDDEP-FFVLNSDVICDFP-LAELLDFHKK 126 (233)
T ss_pred HhccCCCC-EEEEeCCEeeCCC-HHHHHHHHHH
Confidence 6632 235 5666999988766 5788887764
No 119
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=85.76 E-value=8.2 Score=35.26 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=56.4
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKD 173 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~ 173 (519)
+..+.++.+++.+... . -++++|.+...+. ..+. +++++..... ..|-...+..|+++. +
T Consensus 24 ~g~~ll~~~i~~l~~~-~---~~iivv~~~~~~~--------~~~~----~~~~v~~~~~--~~G~~~si~~~l~~~--~ 83 (181)
T cd02503 24 GGKPLLEHVLERLKPL-V---DEVVISANRDQER--------YALL----GVPVIPDEPP--GKGPLAGILAALRAA--P 83 (181)
T ss_pred CCEEHHHHHHHHHHhh-c---CEEEEECCCChHH--------Hhhc----CCcEeeCCCC--CCCCHHHHHHHHHhc--C
Confidence 4567888888888754 2 2565554433221 1111 4566655431 123456778888887 5
Q ss_pred CcEEEEEcCCCc-cChHHHHHHHHHH
Q 010062 174 SKYVLFLDDDVR-LHPGTIGALTTEM 198 (519)
Q Consensus 174 gd~vv~lDaD~~-~~pd~L~~lv~~l 198 (519)
.|.++++++|.- ++++.++.+++.+
T Consensus 84 ~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 84 ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 789999999995 7999999999988
No 120
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=84.98 E-value=24 Score=38.34 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=72.5
Q ss_pred CCCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHH
Q 010062 82 KLPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIH 161 (519)
Q Consensus 82 ~~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~ 161 (519)
..++|.|++=+|-.+ .+++.++.+... |.+++++|-.++..+ .+.+++..++.+...++++...+ +.|. =+.
T Consensus 263 ~~~kiav~lHv~Y~D-Ll~E~l~~l~~~--p~~~Dl~ITt~~~~~--~~~i~~~l~~~~~~~~~~v~vv~-NrGR--Di~ 334 (498)
T PF05045_consen 263 SKKKIAVHLHVFYPD-LLEEILDYLANI--PFPYDLFITTDSEEK--KEEIEEILAKRPGFKNAEVRVVE-NRGR--DIL 334 (498)
T ss_pred CCCcEEEEEEEEcHh-hHHHHHHHHHhC--CCCeEEEEECCchhh--HHHHHHHHHhccCCCceEEEEeC-CCCc--cHH
Confidence 456899999998875 577788877655 435888665444333 34455555444431145554432 2222 233
Q ss_pred HHHHHHHhcc--CCCcEEEEEcCCCcc--------------------ChHHHHHHHHHHHhCCCeEEEEe
Q 010062 162 NQLVGVENMH--KDSKYVLFLDDDVRL--------------------HPGTIGALTTEMEKNPEIFIQTG 209 (519)
Q Consensus 162 nl~~gl~~a~--~~gd~vv~lDaD~~~--------------------~pd~L~~lv~~l~~dp~vg~V~g 209 (519)
.+..+++..- .++|+|+.+.+--.+ +++..+++++.|++||++|+|..
T Consensus 335 pfLv~~~~~l~~~~YD~v~~~HtKKS~~~~~~~g~~wr~~l~~~LL~s~~~v~~Il~~F~~~p~lGlv~P 404 (498)
T PF05045_consen 335 PFLVGLKDELLDSKYDYVCHLHTKKSPHNDRSDGDSWRRELLDNLLGSKEYVDNILSAFEDDPRLGLVIP 404 (498)
T ss_pred HHHHHHHHHhccCCccEEEEEEcccCcCcCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCceEEeC
Confidence 3432332221 368999998754322 34567788899998999999986
No 121
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=84.66 E-value=17 Score=35.22 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=57.6
Q ss_pred eeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHh
Q 010062 90 MPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVEN 169 (519)
Q Consensus 90 IP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~ 169 (519)
+|+ +..+-+..+++.+.+.. . -+++++.|+ + + +++..+++ +++++..... ..+|. ..+..+++.
T Consensus 19 ~~l-~GkPli~~~le~~~~~~-~--d~VvVvt~~---~--~-i~~~~~~~----g~~~v~~~~~-~~~Gt-~r~~~~~~~ 82 (238)
T TIGR00466 19 EDI-FGKPMIVHVAENANESG-A--DRCIVATDD---E--S-VAQTCQKF----GIEVCMTSKH-HNSGT-ERLAEVVEK 82 (238)
T ss_pred ccc-CCcCHHHHHHHHHHhCC-C--CeEEEEeCH---H--H-HHHHHHHc----CCEEEEeCCC-CCChh-HHHHHHHHH
Confidence 444 45678899999887543 2 256555442 1 1 23334443 3455443211 11221 122223332
Q ss_pred cc-CCCcEEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEE
Q 010062 170 MH-KDSKYVLFLDDDVR-LHPGTIGALTTEMEKNPEIFIQT 208 (519)
Q Consensus 170 a~-~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~dp~vg~V~ 208 (519)
.. .+.|+++++|+|.- ++|+.|.++++.+.+ ++.++++
T Consensus 83 l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~-~~~~~a~ 122 (238)
T TIGR00466 83 LALKDDERIVNLQGDEPFIPKEIIRQVADNLAT-KNVPMAA 122 (238)
T ss_pred hCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhc-CCCCEEE
Confidence 11 14589999999997 899999999999864 4455544
No 122
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=84.46 E-value=0.68 Score=46.51 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=58.0
Q ss_pred cEEEEeeccCCc-hHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEc-------CCCCCc
Q 010062 85 RVTVVMPLKGFG-EHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVA-------GLSTTC 156 (519)
Q Consensus 85 ~VSVIIP~~ne~-~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~-------~~~~~~ 156 (519)
.|.|+||+-... ....+..+++++ +|.+|||-|..-.....+ |...+.++... +.+.-.
T Consensus 9 ~~divi~~~~~~l~~~~~~wr~~~~-----~~hliiv~d~~~~~~~~~--------p~g~~~~~y~~~di~~~lg~~~~i 75 (348)
T PF03214_consen 9 EVDIVIPALRPNLTDFLEEWRPFFS-----PYHLIIVQDPDPNEEIKV--------PEGFDYEVYNRNDIERVLGAKTLI 75 (348)
T ss_pred cccEEeecccccHHHHHHHHHHhhc-----ceeEEEEeCCCccccccC--------CcccceeeecHhhHHhhcCCcccc
Confidence 589999987743 245566666663 588888877654332222 22112333221 111111
Q ss_pred chhHHH-HHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 157 SQKIHN-QLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 157 ~~K~~n-l~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
+-|.+| -+.|+-.+ +-||++++|+|+.+..|.-...+..+++
T Consensus 76 ~~~~~a~R~fGyL~s--~~~yivsiDDD~~P~~D~~g~~~~~v~q 118 (348)
T PF03214_consen 76 PFKGDACRNFGYLVS--KKDYIVSIDDDCLPAKDDFGTHIDAVAQ 118 (348)
T ss_pred cccccchhhhHhhhc--ccceEEEEccccccccCCccceehhhhc
Confidence 112111 23466666 4599999999999988877666666654
No 123
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=84.39 E-value=9.8 Score=35.65 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=57.1
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcC-CCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFK-DDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~-~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
++|+.| .+.+..+++++...... +++++.+...+ + +++...+.. ....+.++..+.. .+-..++..+.
T Consensus 23 ll~v~g-~pli~~~l~~l~~~g~~---~i~vv~~~~~~---~-i~~~~~~~~~~~~~i~~~~~~~~---~g~~~al~~~~ 91 (217)
T cd04181 23 LLPIAG-KPILEYIIERLARAGID---EIILVVGYLGE---Q-IEEYFGDGSKFGVNIEYVVQEEP---LGTAGAVRNAE 91 (217)
T ss_pred ccEECC-eeHHHHHHHHHHHCCCC---EEEEEeccCHH---H-HHHHHcChhhcCceEEEEeCCCC---CccHHHHHHhh
Confidence 344455 48899999999886533 66666665332 2 222222211 1014554444332 23456677777
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
+.. ..+.++++++|.....+. .+++....+
T Consensus 92 ~~~--~~~~~lv~~~D~~~~~~~-~~~~~~~~~ 121 (217)
T cd04181 92 DFL--GDDDFLVVNGDVLTDLDL-SELLRFHRE 121 (217)
T ss_pred hhc--CCCCEEEEECCeecCcCH-HHHHHHHHh
Confidence 766 467899999999988874 445555543
No 124
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=84.35 E-value=16 Score=38.91 Aligned_cols=98 Identities=19% Similarity=0.102 Sum_probs=60.2
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+.+. +.+..+|+++.+.... +++++.....+ + +++...+.. +++++......|. ..++..+++
T Consensus 23 ll~v~gk-pli~~~l~~l~~~g~~---~iivvv~~~~~---~-i~~~~~~~~---~i~~v~~~~~~G~---~~sv~~~~~ 88 (450)
T PRK14360 23 LHPLGGK-SLVERVLDSCEELKPD---RRLVIVGHQAE---E-VEQSLAHLP---GLEFVEQQPQLGT---GHAVQQLLP 88 (450)
T ss_pred cCEECCh-hHHHHHHHHHHhCCCC---eEEEEECCCHH---H-HHHHhcccC---CeEEEEeCCcCCc---HHHHHHHHH
Confidence 5566554 8899999999876442 56666654332 2 233333322 4677654433332 345555665
Q ss_pred hccCCCcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 169 NMHKDSKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
......+.++++|+|. .+.++.++++++.+++
T Consensus 89 ~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~ 121 (450)
T PRK14360 89 VLKGFEGDLLVLNGDVPLLRPETLEALLNTHRS 121 (450)
T ss_pred HhhccCCcEEEEeCCccccCHHHHHHHHHHHHh
Confidence 5421235678899998 5789999999998865
No 125
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=84.33 E-value=8.1 Score=38.18 Aligned_cols=108 Identities=15% Similarity=0.071 Sum_probs=68.2
Q ss_pred EEEEe-eccC-Cch--HHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcC----------
Q 010062 86 VTVVM-PLKG-FGE--HNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAG---------- 151 (519)
Q Consensus 86 VSVII-P~~n-e~~--~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~---------- 151 (519)
++|.+ |++. |++ .+.+-|+....+.- -.+.+-+.+++++..++++.+.+. + .++++.-+
T Consensus 3 ~~vCv~pl~~~~~~~~~l~e~ie~~~~~G~---~~~~~Y~~~~~~~~~~vL~~Y~~~--g--~v~~~~w~~~~~~~~~~~ 75 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWLQLIEWIEYHRLLGV---DHFYFYDNSSSPSVRKVLKEYERS--G--YVEVIPWPLRPKFPDFPS 75 (285)
T ss_pred EEEEccchhcccccHHHHHHHHHHHHHhCC---CEEEEEEccCCHHHHHhHHHHhhc--C--eEEEEEcccccccCCccc
Confidence 55555 7776 544 78888887777632 245566777888888888887765 2 46665543
Q ss_pred --CCCCc----chhHHHHHHHHHhccCCCcEEEEEcCCCccChH----HHHHHHHHHHh
Q 010062 152 --LSTTC----SQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPG----TIGALTTEMEK 200 (519)
Q Consensus 152 --~~~~~----~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd----~L~~lv~~l~~ 200 (519)
..... .+-..+.+..+-+.+.+.+|++|+|-|..+-|. +...+...+++
T Consensus 76 ~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~ 134 (285)
T PF01697_consen 76 PFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLRE 134 (285)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhh
Confidence 00111 112345556666666678999999999986443 36666666654
No 126
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=83.94 E-value=11 Score=36.18 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=59.9
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCC-CceEEEEcCCCCCcchhHHHHHHHHHhccC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDD-VDAKVVVAGLSTTCSQKIHNQLVGVENMHK 172 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~-~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~ 172 (519)
++.+.+..+++.+...... -++++|.++.. ...+++...++... .+++++..+. +....+..|++...
T Consensus 28 ~gkpll~~~i~~~~~~~~~--~~ivVv~~~~~---~~~~~~~~~~~~~~~~~~~~v~~g~-----~r~~sv~~gl~~~~- 96 (230)
T PRK13385 28 VGEPIFIHALRPFLADNRC--SKIIIVTQAQE---RKHVQDLMKQLNVADQRVEVVKGGT-----ERQESVAAGLDRIG- 96 (230)
T ss_pred CCeEHHHHHHHHHHcCCCC--CEEEEEeChhh---HHHHHHHHHhcCcCCCceEEcCCCc-----hHHHHHHHHHHhcc-
Confidence 4678899999998765322 25666654422 22233333333210 0344443221 23467777888764
Q ss_pred CCcEEEEEcCCCc-cChHHHHHHHHHHHhC
Q 010062 173 DSKYVLFLDDDVR-LHPGTIGALTTEMEKN 201 (519)
Q Consensus 173 ~gd~vv~lDaD~~-~~pd~L~~lv~~l~~d 201 (519)
+.+++++.|+|.- ++++.++++++.+.++
T Consensus 97 ~~d~vli~~~d~P~i~~~~i~~li~~~~~~ 126 (230)
T PRK13385 97 NEDVILVHDGARPFLTQDIIDRLLEGVAKY 126 (230)
T ss_pred CCCeEEEccCCCCCCCHHHHHHHHHHHhhC
Confidence 3589999999996 7999999999998753
No 127
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=83.90 E-value=8.8 Score=40.79 Aligned_cols=103 Identities=19% Similarity=0.112 Sum_probs=65.1
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+.|. +.+..+++++.+.... +++++.....+ + +++...++ +++++...... +-..++..+++
T Consensus 22 l~~i~gk-pli~~~l~~l~~~g~~---~iiiv~~~~~~---~-i~~~~~~~----~i~~~~~~~~~---G~~~ai~~a~~ 86 (451)
T TIGR01173 22 LHPLAGK-PMLEHVIDAARALGPQ---KIHVVYGHGAE---Q-VRKALANR----DVNWVLQAEQL---GTGHAVLQALP 86 (451)
T ss_pred hceeCCc-cHHHHHHHHHHhCCCC---eEEEEECCCHH---H-HHHHhcCC----CcEEEEcCCCC---chHHHHHHHHH
Confidence 5565554 8899999999876543 65556553322 2 33333332 45665544333 34566777777
Q ss_pred hccCCCcEEEEEcCCC-ccChHHHHHHHHHHHhCCCeEEEE
Q 010062 169 NMHKDSKYVLFLDDDV-RLHPGTIGALTTEMEKNPEIFIQT 208 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~-~~~pd~L~~lv~~l~~dp~vg~V~ 208 (519)
... +.|.++++++|. .++++.++++++.+++ .+..+++
T Consensus 87 ~l~-~~~~~lv~~~D~p~i~~~~~~~l~~~~~~-~~~~~~~ 125 (451)
T TIGR01173 87 FLP-DDGDVLVLYGDVPLISAETLERLLEAHRQ-NGITLLT 125 (451)
T ss_pred hcC-CCCcEEEEECCcCCcCHHHHHHHHHHHhh-CCEEEEE
Confidence 763 247899999998 6789999999988865 4544444
No 128
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=83.90 E-value=7.9 Score=37.81 Aligned_cols=102 Identities=13% Similarity=-0.001 Sum_probs=55.9
Q ss_pred EeeccCCchHHHHHHHHHHhc-cCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTS-LYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q-~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
++|+.|. +.|...|+++... .-. +++++.....+.-.+.+...... .+ +.+.++......|. ++++..+.
T Consensus 25 llpv~g~-plI~~~l~~l~~~~gi~---~i~iv~~~~~~~i~~~l~~~~~~-~~-~~i~~~~~~~~~Gt---~~al~~a~ 95 (257)
T cd06428 25 LFPVAGK-PMIHHHIEACAKVPDLK---EVLLIGFYPESVFSDFISDAQQE-FN-VPIRYLQEYKPLGT---AGGLYHFR 95 (257)
T ss_pred cCeECCe-eHHHHHHHHHHhcCCCc---EEEEEecCCHHHHHHHHHhcccc-cC-ceEEEecCCccCCc---HHHHHHHH
Confidence 6677776 8999999999874 332 66666655332222222211111 11 13444333333333 34444444
Q ss_pred Hhcc-CCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 168 ENMH-KDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 168 ~~a~-~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
.... ...|.++++.+|....-+ +..+++..++
T Consensus 96 ~~l~~~~~~~~lv~~gD~~~~~d-l~~~~~~h~~ 128 (257)
T cd06428 96 DQILAGNPSAFFVLNADVCCDFP-LQELLEFHKK 128 (257)
T ss_pred HHhhccCCCCEEEEcCCeecCCC-HHHHHHHHHH
Confidence 4331 124677889999987665 7788887654
No 129
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=83.65 E-value=14 Score=35.41 Aligned_cols=104 Identities=17% Similarity=0.108 Sum_probs=56.9
Q ss_pred CcEEEEeeccCCchH---HHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCC----CCc
Q 010062 84 PRVTVVMPLKGFGEH---NLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLS----TTC 156 (519)
Q Consensus 84 P~VSVIIP~~ne~~~---L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~----~~~ 156 (519)
|.+-||-|+|..... |-+.-..|.- -| ++--|||+|+.+ .|.+ +.++.++..- ..+.+....+ ...
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~l--Vp-~l~WIVVEd~~~-~t~~-va~lL~~sgl--~y~HL~~~~~~~~~~~~ 73 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRL--VP-PLHWIVVEDSEE-KTPL-VAELLRRSGL--MYTHLNAKTPSDPTWLK 73 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhc--CC-ceEEEEEeCCCC-CCHH-HHHHHHHcCC--ceEEeccCCCCCcccCC
Confidence 457788899988753 3333333332 25 688888888762 2322 2333333321 2222222211 111
Q ss_pred chhHHHHHHHHHhccC-----CCcEEEEEcCCCccChHHHHHH
Q 010062 157 SQKIHNQLVGVENMHK-----DSKYVLFLDDDVRLHPGTIGAL 194 (519)
Q Consensus 157 ~~K~~nl~~gl~~a~~-----~gd~vv~lDaD~~~~pd~L~~l 194 (519)
.....+-|.|++..+. ..-+|.|.|+|..++-+..++|
T Consensus 74 ~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~em 116 (223)
T cd00218 74 PRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEM 116 (223)
T ss_pred cccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHH
Confidence 1123444556655431 3469999999999998888774
No 130
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=82.68 E-value=24 Score=33.27 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=63.5
Q ss_pred CchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCCC
Q 010062 95 FGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKDS 174 (519)
Q Consensus 95 e~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~g 174 (519)
..+.+..+++..+.-.+. ++|+|.-.. ..+..++..++ .+++++.++... .|-...+..|++++...+
T Consensus 30 g~plv~~~~~~a~~a~~~---~vivV~g~~---~~~~~~a~~~~----~~~~~v~npd~~--~Gls~Sl~ag~~a~~~~~ 97 (199)
T COG2068 30 GKPLVRASAETALSAGLD---RVIVVTGHR---VAEAVEALLAQ----LGVTVVVNPDYA--QGLSTSLKAGLRAADAEG 97 (199)
T ss_pred CCcHHHHHHHHHHhcCCC---eEEEEeCcc---hhhHHHhhhcc----CCeEEEeCcchh--hhHhHHHHHHHHhcccCC
Confidence 345677788877764332 565554443 22333333322 278998886543 345567788999886445
Q ss_pred cEEEEEcCCCc-cChHHHHHHHHHHHh
Q 010062 175 KYVLFLDDDVR-LHPGTIGALTTEMEK 200 (519)
Q Consensus 175 d~vv~lDaD~~-~~pd~L~~lv~~l~~ 200 (519)
|.++++=+|-- +.|+.+.++++.+..
T Consensus 98 ~~v~~~lgDmP~V~~~t~~rl~~~~~~ 124 (199)
T COG2068 98 DGVVLMLGDMPQVTPATVRRLIAAFRA 124 (199)
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhccc
Confidence 69999999986 899999999999975
No 131
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=82.65 E-value=9.7 Score=35.81 Aligned_cols=99 Identities=9% Similarity=0.033 Sum_probs=56.1
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+.| .+.+...++.+.+..-. +++++.+...+ ++.+.+...+.....+.+..... ..|...++..+++
T Consensus 23 ll~i~g-~pli~~~l~~l~~~g~~---~v~vv~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~---~~G~~~~l~~a~~ 92 (223)
T cd06915 23 LAPVAG-RPFLEYLLEYLARQGIS---RIVLSVGYLAE---QIEEYFGDGYRGGIRIYYVIEPE---PLGTGGAIKNALP 92 (223)
T ss_pred ccEECC-cchHHHHHHHHHHCCCC---EEEEEcccCHH---HHHHHHcCccccCceEEEEECCC---CCcchHHHHHHHh
Confidence 345455 47899999998876422 56666554332 22222222221111232323222 2344566777777
Q ss_pred hccCCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 169 NMHKDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
.. +.|.++++++|...+++ +.+++..+++
T Consensus 93 ~~--~~~~~lv~~~D~~~~~~-~~~~l~~~~~ 121 (223)
T cd06915 93 KL--PEDQFLVLNGDTYFDVD-LLALLAALRA 121 (223)
T ss_pred hc--CCCCEEEEECCcccCCC-HHHHHHHHHh
Confidence 76 45778999999988665 6677777754
No 132
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=81.42 E-value=25 Score=33.68 Aligned_cols=103 Identities=9% Similarity=0.037 Sum_probs=62.9
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEE-cCC--CCCcchhHHHHHHHHHhc
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVV-AGL--STTCSQKIHNQLVGVENM 170 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~-~~~--~~~~~~K~~nl~~gl~~a 170 (519)
+..+.+..+++.+++...- +.|+|. ++|+ + +.+.++++. +++.. ++. ..+..+....+..+++..
T Consensus 22 ~GkpLi~~ti~~a~~s~~~---d~IvVs--td~~--~-i~~~a~~~g----~~v~~~r~~~l~~d~~~~~~si~~~l~~l 89 (222)
T TIGR03584 22 CGKPMIAYSIEAALNSGLF---DKVVVS--TDDE--E-IAEVAKSYG----ASVPFLRPKELADDFTGTAPVVKHAIEEL 89 (222)
T ss_pred CCcCHHHHHHHHHHhCCCC---CEEEEe--CCCH--H-HHHHHHHcC----CEeEEeChHHHcCCCCCchHHHHHHHHHH
Confidence 4567899999999886543 333442 2222 2 233344443 33322 221 123445566777777654
Q ss_pred c--CCCcEEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEe
Q 010062 171 H--KDSKYVLFLDDDVR-LHPGTIGALTTEMEKNPEIFIQTG 209 (519)
Q Consensus 171 ~--~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~dp~vg~V~g 209 (519)
. .+.|.++++++|.- ..++.+.++++.+.+ .+.+.+.+
T Consensus 90 ~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~-~~~ds~~s 130 (222)
T TIGR03584 90 KLQKQYDHACCIYATAPFLQAKILKEAFELLKQ-PNAHFVFS 130 (222)
T ss_pred hhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh-CCCCEEEE
Confidence 2 24699999999996 688999999999975 44544443
No 133
>PLN02458 transferase, transferring glycosyl groups
Probab=80.51 E-value=33 Score=34.78 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=56.7
Q ss_pred CcEEEEeeccCC-ch---HHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCC-Cc-c
Q 010062 84 PRVTVVMPLKGF-GE---HNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLST-TC-S 157 (519)
Q Consensus 84 P~VSVIIP~~ne-~~---~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~-~~-~ 157 (519)
+.+-||-|+|.. .. .|-+.-..|..-.+ ++--|||+|+.+ +.+ +.++.++..- ..+.+....+. .. .
T Consensus 112 rlIivVTPTY~rR~~Q~a~LTRLahTL~lVp~--pL~WIVVEd~~~--t~~-va~lLrrsGl--~y~HL~~k~~~~~~~~ 184 (346)
T PLN02458 112 RLVIIVTPISTKDRYQGVLLRRLANTLRLVPP--PLLWIVVEGQSD--SEE-VSEMLRKTGI--MYRHLVFKENFTDPEA 184 (346)
T ss_pred ceEEEECCCCCCcchhHHHHHHHHHHHhcCCC--CceEEEEeCCCC--CHH-HHHHHHHcCC--ceEEeccCCCCCCccc
Confidence 457788899984 32 34444444433322 588888887652 223 3444444331 22222222221 11 1
Q ss_pred hhHHHHHHHHHhcc--CCCcEEEEEcCCCccChHHHHHH
Q 010062 158 QKIHNQLVGVENMH--KDSKYVLFLDDDVRLHPGTIGAL 194 (519)
Q Consensus 158 ~K~~nl~~gl~~a~--~~gd~vv~lDaD~~~~pd~L~~l 194 (519)
.+.+.-|.|++..+ ...-+|.|.|+|..++-+..++|
T Consensus 185 r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEm 223 (346)
T PLN02458 185 ELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEI 223 (346)
T ss_pred hhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHH
Confidence 12344556666552 13469999999999998877774
No 134
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=80.49 E-value=17 Score=38.66 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=59.0
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+-|. +.++..++.+...... +++++.....+. +++...+... .+.++....+. +-..++..+.+
T Consensus 27 ll~v~gk-pli~~~l~~l~~~gi~---~ivvv~~~~~~~----i~~~~~~~~~--~~~~~~~~~~~---G~~~sl~~a~~ 93 (446)
T PRK14353 27 LHPVAGR-PMLAHVLAAAASLGPS---RVAVVVGPGAEA----VAAAAAKIAP--DAEIFVQKERL---GTAHAVLAARE 93 (446)
T ss_pred cCEECCc-hHHHHHHHHHHhCCCC---cEEEEECCCHHH----HHHHhhccCC--CceEEEcCCCC---CcHHHHHHHHH
Confidence 4566564 8899999998876432 666666543322 2333332211 33444333222 23455666666
Q ss_pred hccCCCcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 169 NMHKDSKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
......|.++++++|. .++++.++++++..++
T Consensus 94 ~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~ 126 (446)
T PRK14353 94 ALAGGYGDVLVLYGDTPLITAETLARLRERLAD 126 (446)
T ss_pred HHhccCCCEEEEeCCcccCCHHHHHHHHHhHhc
Confidence 5421236678889998 6899999999987664
No 135
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=80.02 E-value=35 Score=36.50 Aligned_cols=98 Identities=15% Similarity=0.070 Sum_probs=62.1
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+.+. +.+...++++.+... -+++++.....+ ++.+.+ .+.. .+.++...... +-..++..+++
T Consensus 25 l~pi~g~-pli~~~l~~l~~~gi---~~iiiv~~~~~~---~i~~~~-~~~~---~i~~~~~~~~~---Gt~~al~~a~~ 90 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAAREAGA---GRIVLVVGHQAE---KVREHF-AGDG---DVSFALQEEQL---GTGHAVACAAP 90 (459)
T ss_pred eceeCCc-cHHHHHHHHHHhcCC---CeEEEEECCCHH---HHHHHh-ccCC---ceEEEecCCCC---CHHHHHHHHHH
Confidence 6677665 889999999887543 366666664322 222222 2211 45555443333 33456666766
Q ss_pred hccCCCcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 169 NMHKDSKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
......|.++++++|. .++++.++++++.+++
T Consensus 91 ~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~ 123 (459)
T PRK14355 91 ALDGFSGTVLILCGDVPLLRAETLQGMLAAHRA 123 (459)
T ss_pred HhhccCCcEEEEECCccCcCHHHHHHHHHHHHh
Confidence 6532247899999999 6789999999998865
No 136
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=79.95 E-value=20 Score=34.46 Aligned_cols=96 Identities=10% Similarity=0.146 Sum_probs=54.2
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+ +..+.+...++.+.+.. --+++++.+. + + +++...++ +++++...... ..+..+ +..++.
T Consensus 21 Ll~i-~Gkpll~~~l~~l~~~~---i~~ivvv~~~--~---~-i~~~~~~~----~~~v~~~~~~~-~~gt~~-~~~~~~ 84 (245)
T PRK05450 21 LADI-GGKPMIVRVYERASKAG---ADRVVVATDD--E---R-IADAVEAF----GGEVVMTSPDH-PSGTDR-IAEAAA 84 (245)
T ss_pred cccc-CCcCHHHHHHHHHHhcC---CCeEEEECCc--H---H-HHHHHHHc----CCEEEECCCcC-CCchHH-HHHHHH
Confidence 3344 44678899999888752 2355554431 1 2 33333333 34444432221 112222 223333
Q ss_pred hcc-CCCcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 169 NMH-KDSKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 169 ~a~-~~gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
... .+.+.++++++|. .++++.++++++.+.+
T Consensus 85 ~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~ 118 (245)
T PRK05450 85 KLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLAN 118 (245)
T ss_pred hcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhc
Confidence 331 1358899999999 6899999999998865
No 137
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=79.05 E-value=3.6 Score=40.39 Aligned_cols=109 Identities=18% Similarity=0.204 Sum_probs=51.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhccccccccccCCCccccc-ccchhc
Q 010062 173 DSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKTFFLW-GGCMMM 251 (519)
Q Consensus 173 ~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~ 251 (519)
+.|+.+++|+|+.+..+-|.+++..+. |.-.+.-|.+......... .......... .+. .++. |+.+++
T Consensus 86 ~~~Wf~~~DDDtyv~~~~L~~~L~~~~--~~~~~yiG~~~~~~~~~~~--~~~~~~~~~~-----~~~-~f~~GGaG~vl 155 (252)
T PF02434_consen 86 DKDWFCFADDDTYVNVENLRRLLSKYD--PSEPIYIGRPSGDRPIEII--HRFNPNKSKD-----SGF-WFATGGAGYVL 155 (252)
T ss_dssp T-SEEEEEETTEEE-HHHHHHHHTTS---TTS--EEE-EE------------------------------EE-GGG-EEE
T ss_pred CceEEEEEeCCceecHHHHHHHHhhCC--CccCEEeeeeccCccceee--ccccccccCc-----Cce-EeeCCCeeHHH
Confidence 469999999999999999999999986 4444544533221110000 0000000000 011 1444 456889
Q ss_pred cHhhhccccc----c--Cccc-CCCCCcccHHHHHHHHHh-CCCcEEecC
Q 010062 252 HADDFRLDRY----G--VVSG-LRDGGYSDDMTLAALAGA-HNRLITSPP 293 (519)
Q Consensus 252 Rr~~~~~~~~----G--g~~~-~~~g~~~ED~~l~~~~~~-~g~~v~~~~ 293 (519)
.|++++. + + -... ...-...||+.++..+.+ .|......+
T Consensus 156 Sr~~~~k--~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~ 203 (252)
T PF02434_consen 156 SRALLKK--MSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSP 203 (252)
T ss_dssp EHHHHHH--HHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-T
T ss_pred hHHHHHH--HhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeech
Confidence 9998833 3 1 1111 111135799999987776 887666554
No 138
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=76.79 E-value=45 Score=33.28 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=63.0
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcC---CCCC--cchh
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAG---LSTT--CSQK 159 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~---~~~~--~~~K 159 (519)
.++||....|-.+.+..++.|++.-.- .++++.+++|+.+++..+.+.+....+.. .+..+... .... .+..
T Consensus 2 ~~~iv~~~~~y~~~~~~~i~Sil~n~~-~~~~fhii~d~~s~~~~~~l~~~~~~~~~--~i~f~~i~~~~~~~~~~~~~~ 78 (280)
T cd06431 2 HVAIVCAGYNASRDVVTLVKSVLFYRR-NPLHFHLITDEIARRILATLFQTWMVPAV--EVSFYNAEELKSRVSWIPNKH 78 (280)
T ss_pred EEEEEEccCCcHHHHHHHHHHHHHcCC-CCEEEEEEECCcCHHHHHHHHHhccccCc--EEEEEEhHHhhhhhccCcccc
Confidence 377888886666889999999988643 35899888887776655555443333221 44444421 0000 0000
Q ss_pred -HHH---HHHHHHhccC-CCcEEEEEcCCCccChHHHHHHHHH
Q 010062 160 -IHN---QLVGVENMHK-DSKYVLFLDDDVRLHPGTIGALTTE 197 (519)
Q Consensus 160 -~~n---l~~gl~~a~~-~gd~vv~lDaD~~~~pd~L~~lv~~ 197 (519)
... ..-.+...-+ +.|=++.+|+|+++-.| |+++-+.
T Consensus 79 ~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~d-i~eL~~~ 120 (280)
T cd06431 79 YSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATD-IAELWKI 120 (280)
T ss_pred hhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCC-HHHHHHH
Confidence 001 1112222222 46899999999998766 5565554
No 139
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=76.72 E-value=20 Score=38.21 Aligned_cols=96 Identities=15% Similarity=0.050 Sum_probs=59.2
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+-|. +.+..+++++.+... -+++++.....+ .+++.. .. .+.++...... +...++..+++
T Consensus 24 ll~i~Gk-pli~~~l~~l~~~gi---~~iivvv~~~~~----~i~~~~---~~--~~~~~~~~~~~---g~~~al~~a~~ 87 (458)
T PRK14354 24 LHKVCGK-PMVEHVVDSVKKAGI---DKIVTVVGHGAE----EVKEVL---GD--RSEFALQEEQL---GTGHAVMQAEE 87 (458)
T ss_pred hCEeCCc-cHHHHHHHHHHhCCC---CeEEEEeCCCHH----HHHHHh---cC--CcEEEEcCCCC---CHHHHHHHHHH
Confidence 4566665 899999999987543 255555553322 122322 21 34444433222 33556666666
Q ss_pred hccCCCcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 169 NMHKDSKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
......|.++++++|. .++++.++++++.+++
T Consensus 88 ~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~ 120 (458)
T PRK14354 88 FLADKEGTTLVICGDTPLITAETLKNLIDFHEE 120 (458)
T ss_pred HhcccCCeEEEEECCccccCHHHHHHHHHHHHh
Confidence 5521247899999998 5789999999998864
No 140
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=76.54 E-value=48 Score=31.53 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=58.8
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKD 173 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~ 173 (519)
++.+.+..+++.+...... -++++|.++.. ..++.+....... ++.++..+ ......+..|++... +
T Consensus 29 ~g~pli~~~l~~l~~~~~~--~~ivvv~~~~~--~~~~~~~~~~~~~---~~~~~~~~-----~~~~~sv~~~l~~~~-~ 95 (227)
T PRK00155 29 GGKPILEHTLEAFLAHPRI--DEIIVVVPPDD--RPDFAELLLAKDP---KVTVVAGG-----AERQDSVLNGLQALP-D 95 (227)
T ss_pred CCEEHHHHHHHHHHcCCCC--CEEEEEeChHH--HHHHHHHhhccCC---ceEEeCCc-----chHHHHHHHHHHhCC-C
Confidence 4567889999998865322 26666655332 1122222221111 33433322 124677778887652 4
Q ss_pred CcEEEEEcCCCc-cChHHHHHHHHHHHhC
Q 010062 174 SKYVLFLDDDVR-LHPGTIGALTTEMEKN 201 (519)
Q Consensus 174 gd~vv~lDaD~~-~~pd~L~~lv~~l~~d 201 (519)
.|+++++|+|.- ++++.++++++.+.++
T Consensus 96 ~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 124 (227)
T PRK00155 96 DDWVLVHDAARPFLTPDDIDRLIEAAEET 124 (227)
T ss_pred CCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 689999999986 7999999999998753
No 141
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=75.84 E-value=50 Score=31.03 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=57.6
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKD 173 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~ 173 (519)
+..+.+..+++.+...... -++++|.++.. .+.+++...... .+.++..+. .....+..|++... +
T Consensus 25 ~gkpll~~~l~~l~~~~~~--~~ivVv~~~~~---~~~~~~~~~~~~---~~~~~~~~~-----~~~~sl~~~l~~~~-~ 90 (217)
T TIGR00453 25 GGRPLLEHTLDAFLAHPAI--DEVVVVVSPED---QEFFQKYLVARA---VPKIVAGGD-----TRQDSVRNGLKALK-D 90 (217)
T ss_pred CCeEHHHHHHHHHhcCCCC--CEEEEEEChHH---HHHHHHHhhcCC---cEEEeCCCc-----hHHHHHHHHHHhCC-C
Confidence 4568899999998865322 26666654432 122222221111 233332221 13456777887652 3
Q ss_pred CcEEEEEcCCCc-cChHHHHHHHHHHHhC
Q 010062 174 SKYVLFLDDDVR-LHPGTIGALTTEMEKN 201 (519)
Q Consensus 174 gd~vv~lDaD~~-~~pd~L~~lv~~l~~d 201 (519)
.|+++++|+|.- ++++.+.++++.+.++
T Consensus 91 ~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 119 (217)
T TIGR00453 91 AEWVLVHDAARPFVPKELLDRLLEALRKA 119 (217)
T ss_pred CCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 589999999994 8999999999988753
No 142
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=75.51 E-value=58 Score=30.94 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=53.8
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcC-CCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFK-DDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~-~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
++|+-|. +.+...++++...... ++++|.....+. +++...+.. ...++.++..+... |-..++..+.
T Consensus 25 l~~i~g~-~li~~~l~~l~~~~~~---~i~vv~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~---g~~~sl~~a~ 93 (236)
T cd04189 25 LIPVAGK-PIIQYAIEDLREAGIE---DIGIVVGPTGEE----IKEALGDGSRFGVRITYILQEEPL---GLAHAVLAAR 93 (236)
T ss_pred eeEECCc-chHHHHHHHHHHCCCC---EEEEEcCCCHHH----HHHHhcchhhcCCeEEEEECCCCC---ChHHHHHHHH
Confidence 5666555 8899999998876432 666666553222 233232211 11145444443222 3456666777
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
.... +.+++ ++.+|...+++... ++..+.
T Consensus 94 ~~i~-~~~~l-i~~~D~~~~~~~~~-~~~~~~ 122 (236)
T cd04189 94 DFLG-DEPFV-VYLGDNLIQEGISP-LVRDFL 122 (236)
T ss_pred HhcC-CCCEE-EEECCeecCcCHHH-HHHHHH
Confidence 7653 24554 57889988877554 555443
No 143
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=75.12 E-value=33 Score=32.89 Aligned_cols=102 Identities=12% Similarity=0.104 Sum_probs=62.3
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCC-CceEEEEcCCCCCcchhHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDD-VDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~-~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
++|+.|..+.|...|+.+...... ++++|...... +.+++........ ++++++..+... |-+.++..+.
T Consensus 24 ll~i~g~~pli~~~l~~l~~~g~~---~ii~V~~~~~~---~~i~~~~~~~~~~~~~i~~i~~~~~~---Gta~al~~a~ 94 (248)
T PF00483_consen 24 LLPIGGKYPLIDYVLENLANAGIK---EIIVVVNGYKE---EQIEEHLGSGYKFGVKIEYIVQPEPL---GTAGALLQAL 94 (248)
T ss_dssp GSEETTEEEHHHHHHHHHHHTTCS---EEEEEEETTTH---HHHHHHHTTSGGGTEEEEEEEESSSS---CHHHHHHHTH
T ss_pred cceecCCCcchhhhhhhhcccCCc---eEEEEEeeccc---ccccccccccccccccceeeeccccc---chhHHHHHHH
Confidence 567778778999999999986543 64455443331 2244444433211 246666665544 3566777777
Q ss_pred HhccCCC--cEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 168 ENMHKDS--KYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 168 ~~a~~~g--d~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
.....+. +.++++.+|...+.+ +..+++...+
T Consensus 95 ~~i~~~~~~~~~lv~~gD~i~~~~-~~~~l~~~~~ 128 (248)
T PF00483_consen 95 DFIEEEDDDEDFLVLNGDIIFDDD-LQDMLEFHRE 128 (248)
T ss_dssp HHHTTSEE-SEEEEETTEEEESTT-HHHHHHHHHH
T ss_pred HHhhhccccceEEEEeccccccch-hhhHHHhhhc
Confidence 7764221 359999999999885 4555555543
No 144
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=75.07 E-value=2.6 Score=42.60 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=32.7
Q ss_pred cccccchhccHhhhc-cccccCcccC-CCCCcccHHHHH----HHHHhCCCcEEecCceeeecc
Q 010062 243 FLWGGCMMMHADDFR-LDRYGVVSGL-RDGGYSDDMTLA----ALAGAHNRLITSPPVAVFPHP 300 (519)
Q Consensus 243 ~~~G~~~~~Rr~~~~-~~~~Gg~~~~-~~g~~~ED~~l~----~~~~~~g~~v~~~~~~~~~~~ 300 (519)
...|.|.+|+|+++- +-=.|....- ..+. -||..-+ +++...|+.|..--..+.+++
T Consensus 204 pv~~~NlAF~ReligPA~y~g~m~~g~~i~R-~dDiWsG~c~K~i~dhLG~gVktG~Pyv~h~k 266 (346)
T PLN03180 204 PMCGMNLAFDRELIGPAMYFGLMGDGQPIGR-YDDMWAGWCAKVICDHLGLGVKTGLPYIWHSK 266 (346)
T ss_pred ecccchhhhhhhhcchhheecccCCCCcccc-hhhhHHHHHHHHHHHHhCcceecCCceEecCC
Confidence 456999999999871 1000111110 1111 2777655 377788888887665655554
No 145
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=75.00 E-value=16 Score=34.83 Aligned_cols=93 Identities=15% Similarity=0.221 Sum_probs=57.7
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+-+ .+.+...|+++.+.... ++++|..... +.+++.....+ ++.++.++... ..|-..++..+.+
T Consensus 23 l~~~~g-~~li~~~l~~l~~~gi~---~i~vv~~~~~----~~~~~~~~~~~---~~~~~~~~~~~-~~g~~~s~~~~~~ 90 (229)
T cd02523 23 LLEING-KPLLERQIETLKEAGID---DIVIVTGYKK----EQIEELLKKYP---NIKFVYNPDYA-ETNNIYSLYLARD 90 (229)
T ss_pred eeeECC-EEHHHHHHHHHHHCCCc---eEEEEeccCH----HHHHHHHhccC---CeEEEeCcchh-hhCcHHHHHHHHH
Confidence 455544 48899999999876433 6666665422 22333333322 57777654321 2234566777777
Q ss_pred hccCCCcEEEEEcCCCccChHHHHHHHH
Q 010062 169 NMHKDSKYVLFLDDDVRLHPGTIGALTT 196 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~~~~pd~L~~lv~ 196 (519)
.. .+.++++++|....++.++.+.+
T Consensus 91 ~~---~~~~lv~~~D~~~~~~~~~~~~~ 115 (229)
T cd02523 91 FL---DEDFLLLEGDVVFDPSILERLLS 115 (229)
T ss_pred Hc---CCCEEEEeCCEecCHHHHHHHHc
Confidence 66 36788899999998877776653
No 146
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=74.92 E-value=55 Score=31.21 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=57.4
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
+.|. +..+.+..+++.+...... -+++++.+.... . +.+++..... +++++.++... . ......+++
T Consensus 18 ll~l-~Gkpli~~~i~~l~~~~~~--~~ivVv~~~~~~-~-~~i~~~~~~~----~v~~v~~~~~~---~-l~~~~~~~~ 84 (233)
T cd02518 18 LKPL-GGKPLLEHLLDRLKRSKLI--DEIVIATSTNEE-D-DPLEALAKKL----GVKVFRGSEED---V-LGRYYQAAE 84 (233)
T ss_pred cccc-CCccHHHHHHHHHHhCCCC--CeEEEECCCCcc-c-HHHHHHHHHc----CCeEEECCchh---H-HHHHHHHHH
Confidence 4554 4467889999998875422 155555544431 1 1223333322 46666654321 1 112223333
Q ss_pred hccCCCcEEEEEcCCCc-cChHHHHHHHHHHHh
Q 010062 169 NMHKDSKYVLFLDDDVR-LHPGTIGALTTEMEK 200 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~ 200 (519)
.. +.|+++++++|.- ++++.++++++.+.+
T Consensus 85 ~~--~~d~vli~~~D~P~i~~~~i~~li~~~~~ 115 (233)
T cd02518 85 EY--NADVVVRITGDCPLIDPEIIDAVIRLFLK 115 (233)
T ss_pred Hc--CCCEEEEeCCCCCCCCHHHHHHHHHHHHh
Confidence 33 4689999999996 799999999998865
No 147
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=74.91 E-value=21 Score=32.72 Aligned_cols=90 Identities=14% Similarity=0.065 Sum_probs=56.6
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKD 173 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~ 173 (519)
+..+.+..+++.+... --+++++.+... .. ...... +++++..... +..+-..++..|+++. +
T Consensus 25 ~g~pll~~~l~~l~~~----~~~ivv~~~~~~---~~----~~~~~~---~~~~i~~~~~-~~~g~~~si~~al~~~--~ 87 (186)
T TIGR02665 25 GGKPLIEHVLARLRPQ----VSDLAISANRNP---ER----YAQAGF---GLPVVPDALA-DFPGPLAGILAGLRWA--G 87 (186)
T ss_pred CCEEHHHHHHHHHHhh----CCEEEEEcCCCH---HH----HhhccC---CCcEEecCCC-CCCCCHHHHHHHHHhc--C
Confidence 4567888888888632 125655543321 11 111111 3455554322 2234566777888877 5
Q ss_pred CcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 174 SKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 174 gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
.|.++++++|. .++++.++++++.+.+
T Consensus 88 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 88 TDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred CCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 68999999998 6899999999999864
No 148
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=74.78 E-value=34 Score=32.17 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=53.9
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCC-CCCcchhHHHHHHHHHhccC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGL-STTCSQKIHNQLVGVENMHK 172 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~-~~~~~~K~~nl~~gl~~a~~ 172 (519)
+..+.+..+++.+.+.... -+|+ |.- +++ + +.+...++.. .+.+..... ..+..+....+..+++....
T Consensus 24 ~Gkpll~~~l~~l~~~~~~--~~Iv-V~~--~~~--~-i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~ 93 (223)
T cd02513 24 GGKPLIAWTIEAALESKLF--DRVV-VST--DDE--E-IAEVARKYGA--EVPFLRPAELATDTASSIDVILHALDQLEE 93 (223)
T ss_pred CCccHHHHHHHHHHhCCCC--CEEE-EEC--CcH--H-HHHHHHHhCC--CceeeCChHHCCCCCCcHHHHHHHHHHHHH
Confidence 4467888999998875432 1444 432 121 1 2222333221 112221111 12222345556666665421
Q ss_pred ---CCcEEEEEcCCCc-cChHHHHHHHHHHHh
Q 010062 173 ---DSKYVLFLDDDVR-LHPGTIGALTTEMEK 200 (519)
Q Consensus 173 ---~gd~vv~lDaD~~-~~pd~L~~lv~~l~~ 200 (519)
+.|.++++++|.- ++++.++++++.+.+
T Consensus 94 ~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~ 125 (223)
T cd02513 94 LGRDFDIVVLLQPTSPLRSAEDIDEAIELLLS 125 (223)
T ss_pred hCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHh
Confidence 2489999999996 789999999999875
No 149
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=74.06 E-value=34 Score=36.91 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=59.6
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+-|. +.|...++++.+... -+++++.....+ .+++.... . +++++..+.+.| ...++..+++
T Consensus 29 llpi~gk-pli~~~l~~l~~~gi---~~ivvv~~~~~~----~i~~~~~~---~-~i~~v~~~~~~G---t~~al~~~~~ 93 (481)
T PRK14358 29 LHPVAGR-PMVAWAVKAARDLGA---RKIVVVTGHGAE----QVEAALQG---S-GVAFARQEQQLG---TGDAFLSGAS 93 (481)
T ss_pred ecEECCe-eHHHHHHHHHHhCCC---CeEEEEeCCCHH----HHHHHhcc---C-CcEEecCCCcCC---cHHHHHHHHH
Confidence 5566564 889999999887643 366666654322 23333222 1 566665543333 3555666666
Q ss_pred hccC-CCcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 169 NMHK-DSKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 169 ~a~~-~gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
.... +.+ ++++++|. .+.++.++++++...+
T Consensus 94 ~l~~~~~~-~lV~~gD~P~i~~~~l~~ll~~~~~ 126 (481)
T PRK14358 94 ALTEGDAD-ILVLYGDTPLLRPDTLRALVADHRA 126 (481)
T ss_pred HhhCCCCc-EEEEeCCeeccCHHHHHHHHHHHHh
Confidence 5431 235 66789998 6788999999988765
No 150
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=74.05 E-value=30 Score=33.51 Aligned_cols=98 Identities=12% Similarity=0.193 Sum_probs=57.9
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCC---------CCcchhHHHHH
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLS---------TTCSQKIHNQL 164 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~---------~~~~~K~~nl~ 164 (519)
+-.+.+..++.|+++..-..++.+.++.++-++...+.++++...+.. .++++.-..+ ...+.....-
T Consensus 10 ~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~--~i~~~~i~~~~~~~~~~~~~~~~~~~y~r- 86 (248)
T cd04194 10 NYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNS--SIEFIKIDNDDFKFFPATTDHISYATYYR- 86 (248)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCC--eEEEEEcCHHHHhcCCcccccccHHHHHH-
Confidence 334678889999988554236888888888777777888887665332 5666542211 1111111111
Q ss_pred HHHHhccCCCcEEEEEcCCCccChHHHHHHH
Q 010062 165 VGVENMHKDSKYVLFLDDDVRLHPGTIGALT 195 (519)
Q Consensus 165 ~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv 195 (519)
.-+...-++.|-++++|+|+.+-.| |.++.
T Consensus 87 l~l~~ll~~~~rvlylD~D~lv~~d-i~~L~ 116 (248)
T cd04194 87 LLIPDLLPDYDKVLYLDADIIVLGD-LSELF 116 (248)
T ss_pred HHHHHHhcccCEEEEEeCCEEecCC-HHHHh
Confidence 1122222257899999999988664 33443
No 151
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=73.74 E-value=21 Score=33.48 Aligned_cols=89 Identities=12% Similarity=0.059 Sum_probs=56.9
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKD 173 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~ 173 (519)
+..+.++.+++.+... . -++++|... . +..+.+. . . +++++...... .|-..++..|++.. +
T Consensus 31 ~g~~ll~~~i~~l~~~-~---~~ivvv~~~-~----~~~~~~~---~-~-~~~~i~~~~~~--~G~~~si~~~l~~~--~ 92 (200)
T PRK02726 31 QGVPLLQRVARIAAAC-A---DEVYIITPW-P----ERYQSLL---P-P-GCHWLREPPPS--QGPLVAFAQGLPQI--K 92 (200)
T ss_pred CCEeHHHHHHHHHHhh-C---CEEEEECCC-H----HHHHhhc---c-C-CCeEecCCCCC--CChHHHHHHHHHhC--C
Confidence 4567888899888643 1 245444332 1 1122211 1 1 46666554332 23346788899887 4
Q ss_pred CcEEEEEcCCCc-cChHHHHHHHHHHHh
Q 010062 174 SKYVLFLDDDVR-LHPGTIGALTTEMEK 200 (519)
Q Consensus 174 gd~vv~lDaD~~-~~pd~L~~lv~~l~~ 200 (519)
.|+++++++|.- ++++.++++++.+++
T Consensus 93 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 93 TEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 689999999996 699999999998864
No 152
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=73.73 E-value=60 Score=31.50 Aligned_cols=102 Identities=8% Similarity=-0.026 Sum_probs=57.1
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcC-CCCceEEEE--------cCCCC-----
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFK-DDVDAKVVV--------AGLST----- 154 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~-~~~~v~vv~--------~~~~~----- 154 (519)
++|+.|. +.+..+++++...... |+++|.....+. +++...+.. ...++++.. .+...
T Consensus 23 llpv~~~-p~i~~~~~~~~~~gi~---~i~iv~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (253)
T cd02524 23 MVEIGGR-PILWHIMKIYSHYGHN---DFILCLGYKGHV----IKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVT 94 (253)
T ss_pred EEEECCE-EHHHHHHHHHHhCCCc---eEEEECCCCHHH----HHHHHHhhhhhcCceeEeecccceeeeccccccccee
Confidence 6677664 5888888888876443 676666644322 233222211 000233321 11000
Q ss_pred ----C-cchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 155 ----T-CSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 155 ----~-~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
+ ..+..+++..+.+... +.|.++++++|...+.+. .++++...+
T Consensus 95 ~~~~~~~~~t~~al~~a~~~~~-~~~~~lv~~gD~i~~~dl-~~ll~~h~~ 143 (253)
T cd02524 95 LVDTGLNTMTGGRLKRVRRYLG-DDETFMLTYGDGVSDVNI-NALIEFHRS 143 (253)
T ss_pred ecccCcccccHHHHHHHHHhcC-CCCeEEEEcCCEEECCCH-HHHHHHHHH
Confidence 0 1123566767777662 127889999999988887 888876654
No 153
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=71.69 E-value=78 Score=30.42 Aligned_cols=93 Identities=20% Similarity=0.215 Sum_probs=59.8
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKD 173 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~ 173 (519)
+..+.+..+|+.+.+...- -+|++|..... .+.++++..+ . .++++..+.. ......+|++....+
T Consensus 26 ~Gkpvl~~tl~~f~~~~~i--~~Ivvv~~~~~---~~~~~~~~~~-~---~v~iv~GG~t-----R~~SV~ngL~~l~~~ 91 (221)
T PF01128_consen 26 GGKPVLEYTLEAFLASPEI--DEIVVVVPPED---IDYVEELLSK-K---KVKIVEGGAT-----RQESVYNGLKALAED 91 (221)
T ss_dssp TTEEHHHHHHHHHHTTTTE--SEEEEEESGGG---HHHHHHHHHH-T---TEEEEE--SS-----HHHHHHHHHHCHHCT
T ss_pred CCeEeHHHHHHHHhcCCCC--CeEEEEecchh---HHHHHHhhcC-C---CEEEecCChh-----HHHHHHHHHHHHHcC
Confidence 5678899999999875432 36666654443 2344555555 2 6888776543 233445577775444
Q ss_pred CcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 174 SKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 174 gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
.|+|++-|+== .++++.+.++++.+++
T Consensus 92 ~d~VlIHDaaRPfv~~~~i~~~i~~~~~ 119 (221)
T PF01128_consen 92 CDIVLIHDAARPFVSPELIDRVIEAARE 119 (221)
T ss_dssp SSEEEEEETTSTT--HHHHHHHHHHHHH
T ss_pred CCEEEEEccccCCCCHHHHHHHHHHHHh
Confidence 58999988765 4689999999999985
No 154
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=71.48 E-value=49 Score=34.60 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=57.6
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKD 173 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~ 173 (519)
+..+.+..+++.+.+...- -++++|.+.... +..+++...+. .++++..+ ......+..|++.. +
T Consensus 31 ~GkPll~~tl~~l~~~~~i--~~IvVVv~~~~~---~~~~~~~~~~~---~v~~v~gG-----~~r~~SV~~gL~~l--~ 95 (378)
T PRK09382 31 GGKPLWLHVLENLSSAPAF--KEIVVVIHPDDI---AYMKKALPEIK---FVTLVTGG-----ATRQESVRNALEAL--D 95 (378)
T ss_pred CCeeHHHHHHHHHhcCCCC--CeEEEEeChHHH---HHHHHhcccCC---eEEEeCCC-----chHHHHHHHHHHhc--C
Confidence 5577899999998876321 256666544322 23333222211 23433322 12345677788877 4
Q ss_pred CcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 174 SKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 174 gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
.|++++.|+|- .++++.++++++.+++
T Consensus 96 ~d~VLVhdadrPfv~~e~I~~li~~~~~ 123 (378)
T PRK09382 96 SEYVLIHDAARPFVPKELIDRLIEALDK 123 (378)
T ss_pred CCeEEEeeccccCCCHHHHHHHHHHhhc
Confidence 58999999996 5789999999998864
No 155
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=71.21 E-value=31 Score=36.74 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=60.1
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+ +..+.+...++++....- -++++|.....| .+++. ++.. +++++..+...|. .+++..+++
T Consensus 27 l~~i-~gkpli~~~l~~l~~~~~---~~iivv~~~~~~----~i~~~---~~~~-~~~~v~~~~~~Gt---~~al~~a~~ 91 (456)
T PRK14356 27 LQTL-LGEPMLRFVYRALRPLFG---DNVWTVVGHRAD----MVRAA---FPDE-DARFVLQEQQLGT---GHALQCAWP 91 (456)
T ss_pred eccc-CCCcHHHHHHHHHHhcCC---CcEEEEECCCHH----HHHHh---cccc-CceEEEcCCCCCc---HHHHHHHHH
Confidence 3444 346788888988865421 256666554322 22332 2221 5666665544343 334545544
Q ss_pred hccC-CCcEEEEEcCCC-ccChHHHHHHHHHHHhCCCeEEE
Q 010062 169 NMHK-DSKYVLFLDDDV-RLHPGTIGALTTEMEKNPEIFIQ 207 (519)
Q Consensus 169 ~a~~-~gd~vv~lDaD~-~~~pd~L~~lv~~l~~dp~vg~V 207 (519)
.... +.|.++++++|. .++++.++++++..+. .++.++
T Consensus 92 ~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~-~~~~l~ 131 (456)
T PRK14356 92 SLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAAG-ADLAFM 131 (456)
T ss_pred HHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHhc-CCEEEE
Confidence 4321 358899999999 6899999999987653 444333
No 156
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=70.81 E-value=40 Score=32.66 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=62.3
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCC--------cchhHHHHHH
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTT--------CSQKIHNQLV 165 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~--------~~~K~~nl~~ 165 (519)
|-.+.+.-++.|++...-. ++.+.|+.|+-++...+.++++...+.. .++++....... ...+..-...
T Consensus 11 ~y~~~~~v~i~Sl~~~~~~-~~~~~il~~~is~~~~~~L~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL 87 (246)
T cd00505 11 EYLRGAIVLMKSVLRHRTK-PLRFHVLTNPLSDTFKAALDNLRKLYNF--NYELIPVDILDSVDSEHLKRPIKIVTLTKL 87 (246)
T ss_pred chhHHHHHHHHHHHHhCCC-CeEEEEEEccccHHHHHHHHHHHhccCc--eEEEEeccccCcchhhhhcCccccceeHHH
Confidence 4456888899999987654 6888888888776667777776554332 455554321110 0000000011
Q ss_pred HHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEE
Q 010062 166 GVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQ 207 (519)
Q Consensus 166 gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V 207 (519)
.+...-++.|=++.+|+|+.+-.| |+++-..--++..+++|
T Consensus 88 ~i~~llp~~~kvlYLD~D~iv~~d-i~~L~~~~l~~~~~aav 128 (246)
T cd00505 88 HLPNLVPDYDKILYVDADILVLTD-IDELWDTPLGGQELAAA 128 (246)
T ss_pred HHHHHhhccCeEEEEcCCeeeccC-HHHHhhccCCCCeEEEc
Confidence 111111247899999999998754 55555432222344444
No 157
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=68.83 E-value=78 Score=34.09 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=59.9
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+.+ .+.+...++++.+... -+++++.....+ ++.+. ...... .+.++..+...| -..++..+++
T Consensus 26 llpi~g-kpli~~~l~~l~~~g~---~~iivvv~~~~~---~i~~~-~~~~~~--~~~~~~~~~~~G---t~~si~~al~ 92 (482)
T PRK14352 26 LHTLAG-RSMLGHVLHAAAGLAP---QHLVVVVGHDRE---RVAPA-VAELAP--EVDIAVQDEQPG---TGHAVQCALE 92 (482)
T ss_pred eceeCC-ccHHHHHHHHHHhcCC---CcEEEEECCCHH---HHHHH-hhccCC--ccEEEeCCCCCC---cHHHHHHHHH
Confidence 556655 5589999999987643 266666654332 22222 222211 344444433333 2456666777
Q ss_pred hccC-CCcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 169 NMHK-DSKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 169 ~a~~-~gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
.... ..+.++++++|. .++++.++++++.+.+
T Consensus 93 ~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~ 126 (482)
T PRK14352 93 ALPADFDGTVVVTAGDVPLLDGETLADLVATHTA 126 (482)
T ss_pred HhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHh
Confidence 6521 136788999998 5789999999998765
No 158
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=68.38 E-value=71 Score=31.91 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=55.8
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCC-CceEEEEcCCCCCcchhHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDD-VDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~-~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
++|++|. +.+...|+.+....-. +|++|..... .+.++++....... +++.++..+.+. |-+.++..+.
T Consensus 24 Llpv~gk-PmI~~~L~~l~~aGi~---~I~iv~~~~~---~~~~~~~lg~g~~~g~~i~~~~q~~~~---Gta~al~~a~ 93 (286)
T TIGR01207 24 LLPIYDK-PMIYYPLSTLMLAGIR---DILIISTPQD---TPRFQQLLGDGSQWGVNLSYAVQPSPD---GLAQAFIIGE 93 (286)
T ss_pred eeEECCE-EhHHHHHHHHHHCCCC---EEEEEecCCc---HHHHHHHhccccccCceEEEEEccCCC---CHHHHHHHHH
Confidence 7888887 8999999999876432 6655543222 12233333221111 134444443333 3456777777
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
+... +.++++++ .|..+.+.-+.++++...+
T Consensus 94 ~~l~-~~~~~li~-gD~i~~~~~l~~ll~~~~~ 124 (286)
T TIGR01207 94 DFIG-GDPSALVL-GDNIFYGHDLSDLLKRAAA 124 (286)
T ss_pred HHhC-CCCEEEEE-CCEeccccCHHHHHHHHHh
Confidence 7663 34677665 5554445557777776543
No 159
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=68.30 E-value=1.4e+02 Score=30.90 Aligned_cols=192 Identities=17% Similarity=0.110 Sum_probs=102.4
Q ss_pred CcEEEEeeccCCchHHHHHHHHH-HhccC--CCCeEEEEEECCCCCcH--HHHHHHHHhhcCCCCceEEEE-cCCCCCcc
Q 010062 84 PRVTVVMPLKGFGEHNLLNWRSQ-VTSLY--GGPLEFLFVVESKEDPA--YHSVLRLLQEFKDDVDAKVVV-AGLSTTCS 157 (519)
Q Consensus 84 P~VSVIIP~~ne~~~L~~~L~Sl-~~q~y--p~~~eiIvV~d~s~D~t--~~i~~~l~~~~~~~~~v~vv~-~~~~~~~~ 157 (519)
|.+-++|...-+.-.-++.++.- .++.. .++...++...-.+++. .+.+.+=.+.|.+ +-+.. .+.-....
T Consensus 95 ~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygD---Ii~~df~Dty~nlt 171 (349)
T KOG2287|consen 95 PELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGD---IIQVDFEDTYFNLT 171 (349)
T ss_pred ceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCC---EEEEecccchhchH
Confidence 55777777766654444444433 22222 22467777777666543 2223332444553 33322 22222344
Q ss_pred hhHHH-HHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccC--CCCChhhH--H-HHhhcccc
Q 010062 158 QKIHN-QLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDL--PSGSLGSY--C-IYEYHMPC 231 (519)
Q Consensus 158 ~K~~n-l~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~--~~~~~~~~--~-~~~~~~~~ 231 (519)
-|.-+ +..+...+. +.++|.-+|+|+.+.++.|.+.+.... +|.-....|..... |.+.-.++ + ..+|..
T Consensus 172 lKtl~~l~w~~~~cp-~akfi~K~DDDvfv~~~~L~~~L~~~~-~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y~~-- 247 (349)
T KOG2287|consen 172 LKTLAILLWGVSKCP-DAKFILKIDDDVFVNPDNLLEYLDKLN-DPSSDLYYGRVIQNAPPIRDKTSKWYVPESEYPC-- 247 (349)
T ss_pred HHHHHHHHHHHhcCC-cceEEEeccCceEEcHHHHHHHHhccC-CCCcceEEEeecccCCCCCCCCCCCccCHHHCCC--
Confidence 56543 334444454 579999999999999998888887764 47777777743321 11111110 0 111211
Q ss_pred ccccccCCCcccccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhC-CCcEE
Q 010062 232 SMGFATGGKTFFLWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAH-NRLIT 290 (519)
Q Consensus 232 ~~~~~~~~~~~~~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~-g~~v~ 290 (519)
...+.++.|+..++.+++.+. +--...-..---.||..++..+++. |..-.
T Consensus 248 ------~~YP~Y~sG~gYvis~~~a~~--l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~ 299 (349)
T KOG2287|consen 248 ------SVYPPYASGPGYVISGDAARR--LLKASKHLKFFPIEDVFVGGCLAEDLGIKPV 299 (349)
T ss_pred ------CCCCCcCCCceeEecHHHHHH--HHHHhcCCCccchHHHHHHHHHHHhcCCCcc
Confidence 122347889999999998733 2111111111124999999755554 54333
No 160
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=68.12 E-value=67 Score=32.23 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=57.4
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCC-CCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKD-DVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~-~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
++|++|. +.+...|+++....- -||++|..... . +.++++...... .++++++..+.+. |-++++..+.
T Consensus 28 Llpv~gk-PmI~~~l~~l~~aGi---~~I~ii~~~~~-~--~~~~~~l~~g~~~g~~i~y~~q~~~~---Gta~Al~~a~ 97 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLMLAGI---RDILIISTPQD-T--PRFQQLLGDGSQWGLNLQYKVQPSPD---GLAQAFIIGE 97 (292)
T ss_pred EeEECCE-EHHHHHHHHHHHCCC---CEEEEEecCCc-h--HHHHHHHcCccccCceeEEEECCCCC---CHHHHHHHHH
Confidence 7888987 899999999987643 36655554322 1 223443322111 1245655554443 3456666666
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
+... +.++++++ .|......-+.++++...+
T Consensus 98 ~~i~-~~~~~lv~-gD~i~~~~~l~~ll~~~~~ 128 (292)
T PRK15480 98 EFIG-GDDCALVL-GDNIFYGHDLPKLMEAAVN 128 (292)
T ss_pred HHhC-CCCEEEEE-CCeeeeccCHHHHHHHHHh
Confidence 6653 34677766 4544434447788876643
No 161
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=67.78 E-value=88 Score=30.67 Aligned_cols=102 Identities=12% Similarity=0.107 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCCCc
Q 010062 96 GEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKDSK 175 (519)
Q Consensus 96 ~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~gd 175 (519)
.+.+..+++.+...... -++++|..... .+.+++..+.++. .+.++..+ .. ....+..|++....+.+
T Consensus 52 kpll~~tl~~~~~~~~i--~~IvVV~~~~~---~~~~~~~~~~~~~--~i~~v~gg----~~-r~~SV~~gl~~l~~~~~ 119 (252)
T PLN02728 52 QPIALYSLYTFARMPEV--KEIVVVCDPSY---RDVFEEAVENIDV--PLKFALPG----KE-RQDSVFNGLQEVDANSE 119 (252)
T ss_pred eEHHHHHHHHHHhCCCC--CeEEEEeCHHH---HHHHHHHHHhcCC--ceEEcCCC----Cc-hHHHHHHHHHhccCCCC
Confidence 46788899888764222 36666665332 2233333333331 34433222 11 24456678877643468
Q ss_pred EEEEEcCCC-ccChHHHHHHHHHHHhCCCeEEEEecc
Q 010062 176 YVLFLDDDV-RLHPGTIGALTTEMEKNPEIFIQTGYP 211 (519)
Q Consensus 176 ~vv~lDaD~-~~~pd~L~~lv~~l~~dp~vg~V~g~~ 211 (519)
+|++.|+|- .++++.+.++++..++ .+ +++.+.+
T Consensus 120 ~VlihDaarP~vs~~~i~~li~~~~~-~g-a~i~~~~ 154 (252)
T PLN02728 120 LVCIHDSARPLVTSADIEKVLKDAAV-HG-AAVLGVP 154 (252)
T ss_pred EEEEecCcCCCCCHHHHHHHHHHHhh-CC-eEEEeec
Confidence 999999865 5799999999998875 33 3344433
No 162
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=67.44 E-value=65 Score=34.19 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=59.2
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+-|. +.+..+|+++.+.. -+++++.+... +.+++.. +. .+.++..+... +-..++..+.+
T Consensus 22 l~~v~gk-pli~~~l~~l~~~~----~~i~vv~~~~~----~~i~~~~---~~--~~~~~~~~~~~---g~~~ai~~a~~ 84 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKKVA----QKVGVVLGHEA----ELVKKLL---PE--WVKIFLQEEQL---GTAHAVMCARD 84 (448)
T ss_pred eeEECCe-eHHHHHHHHHHhcC----CcEEEEeCCCH----HHHHHhc---cc--ccEEEecCCCC---ChHHHHHHHHH
Confidence 6677665 88999999888752 25655554322 2233322 21 34554443332 34566666776
Q ss_pred hccCCCcEEEEEcCCC-ccChHHHHHHHHHHHh
Q 010062 169 NMHKDSKYVLFLDDDV-RLHPGTIGALTTEMEK 200 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~-~~~pd~L~~lv~~l~~ 200 (519)
... +.|.++++++|. .+.++.++++++.+++
T Consensus 85 ~l~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~ 116 (448)
T PRK14357 85 FIE-PGDDLLILYGDVPLISENTLKRLIEEHNR 116 (448)
T ss_pred hcC-cCCeEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 653 247899999998 5788889999998864
No 163
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=67.03 E-value=79 Score=31.27 Aligned_cols=88 Identities=11% Similarity=0.039 Sum_probs=52.0
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhh-cCCCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQE-FKDDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~-~~~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
++|+.|+.+.+..+++.+...... -++++|.+... .+.+++...+ .+ +++++..+...+. ..++..+.
T Consensus 26 ll~l~g~~~li~~~l~~l~~~~~~--~~i~vvt~~~~---~~~v~~~l~~~~~---~~~ii~ep~~~gT---a~ai~~a~ 94 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKGLVPP--DRILVVTNEEY---RFLVREQLPEGLP---EENIILEPEGRNT---APAIALAA 94 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhcCCCC--CcEEEEechHH---HHHHHHHHhhcCC---CceEEECCCCCCc---HHHHHHHH
Confidence 577778788999999998865322 25656655321 2233333332 22 5677766544443 33444444
Q ss_pred Hhcc--CCCcEEEEEcCCCccC
Q 010062 168 ENMH--KDSKYVLFLDDDVRLH 187 (519)
Q Consensus 168 ~~a~--~~gd~vv~lDaD~~~~ 187 (519)
.... ...++++++.+|..+.
T Consensus 95 ~~~~~~~~~~~vlVl~~D~~i~ 116 (274)
T cd02509 95 LYLAKRDPDAVLLVLPSDHLIE 116 (274)
T ss_pred HHHHhcCCCCeEEEecchhccc
Confidence 4432 1257999999998876
No 164
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=66.94 E-value=98 Score=28.71 Aligned_cols=105 Identities=11% Similarity=0.009 Sum_probs=59.3
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhh--cCC---CCceEEEEcCC---CCCcchhH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQE--FKD---DVDAKVVVAGL---STTCSQKI 160 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~--~~~---~~~v~vv~~~~---~~~~~~K~ 160 (519)
++|+.|..+.+..+++.+..... -|+++|.....+ ++.+.+... +.. ..+++++.... +....|-.
T Consensus 23 llpv~g~~pli~~~l~~l~~~gi---~~iivv~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gta 96 (200)
T cd02508 23 AVPFGGRYRLIDFPLSNMVNSGI---RNVGVLTQYKSR---SLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTA 96 (200)
T ss_pred eeEECCeeeeHHHHHHHHHHCCC---CEEEEEeCCChH---HHHHHHhCCCcccCCCCCCCEEEeCcccCCCCCcccCcH
Confidence 77888875788999999887643 377777665432 233333211 100 00245544211 11122345
Q ss_pred HHHHHHHHhcc-CCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 161 HNQLVGVENMH-KDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 161 ~nl~~gl~~a~-~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
+++..+..... .+.|.++++.+|... +.-+.++++.+++
T Consensus 97 ~al~~a~~~i~~~~~~~~lv~~gD~v~-~~~~~~~l~~~~~ 136 (200)
T cd02508 97 DAIYQNLDYIERSDPEYVLILSGDHIY-NMDYREMLDFHIE 136 (200)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCEEE-ecCHHHHHHHHHH
Confidence 56666666542 124778899999854 4557888887654
No 165
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=66.27 E-value=50 Score=33.83 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=71.3
Q ss_pred CcEEEEeecc-CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCC--------CC
Q 010062 84 PRVTVVMPLK-GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGL--------ST 154 (519)
Q Consensus 84 P~VSVIIP~~-ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~--------~~ 154 (519)
..+.|+..+= |=.+.+.-++.|++...-..++.+.|++|+-+++..+.++++.++++. .++++.-.. ..
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~--~i~~~~id~~~~~~~~~~~ 101 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNT--RINIYLINCERLKSLPSTK 101 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCC--eEEEEEeCHHHHhCCcccC
Confidence 3577776653 334688899999986543325888888888888888888888888764 566554211 11
Q ss_pred CcchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHH-HHhCCCeEEE
Q 010062 155 TCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTE-MEKNPEIFIQ 207 (519)
Q Consensus 155 ~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~-l~~dp~vg~V 207 (519)
..+.........-+....+.|-++.+|+|+++..| |.++... +.+ ..+++|
T Consensus 102 ~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~d-l~~L~~~dl~~-~~~aav 153 (334)
T PRK15171 102 NWTYATYFRFIIADYFIDKTDKVLYLDADIACKGS-IKELIDLDFAE-NEIAAV 153 (334)
T ss_pred cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCC-HHHHHhccCCC-CeEEEE
Confidence 12211111111111121246899999999998775 5555543 432 334444
No 166
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=65.96 E-value=83 Score=29.10 Aligned_cols=97 Identities=7% Similarity=-0.062 Sum_probs=57.5
Q ss_pred eeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHh
Q 010062 90 MPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVEN 169 (519)
Q Consensus 90 IP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~ 169 (519)
+|+ +..+.+...++++....- -+++++.+..++.+. .+.++. ...+ ... .+ .|-...+..+++.
T Consensus 22 l~i-~GkplI~~vi~~l~~~~i---~~I~Vv~~~~~~~~~----~~l~~~----~~~~-~~~--~g-~G~~~~l~~al~~ 85 (183)
T TIGR00454 22 IEV-CGRCLIDHVLSPLLKSKV---NNIIIATSPHTPKTE----EYINSA----YKDY-KNA--SG-KGYIEDLNECIGE 85 (183)
T ss_pred eEE-CCEEHHHHHHHHHHhCCC---CEEEEEeCCCHHHHH----HHHhhc----CcEE-Eec--CC-CCHHHHHHHHhhc
Confidence 344 456889999999876532 255555554333332 222221 1122 221 12 2345567778775
Q ss_pred ccCCCcEEEEEcCCCc-cChHHHHHHHHHHHhCCC
Q 010062 170 MHKDSKYVLFLDDDVR-LHPGTIGALTTEMEKNPE 203 (519)
Q Consensus 170 a~~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~dp~ 203 (519)
.. ..+.++++-+|.. +.++.+.++++.+.+.++
T Consensus 86 ~~-~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~ 119 (183)
T TIGR00454 86 LY-FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKA 119 (183)
T ss_pred cc-CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCC
Confidence 32 2467889999986 799999999998865343
No 167
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=63.71 E-value=34 Score=34.70 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=63.7
Q ss_pred EEEEe--ecc------CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcH-HHHHHHH-HhhcCCCCceEEEE---cCC
Q 010062 86 VTVVM--PLK------GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPA-YHSVLRL-LQEFKDDVDAKVVV---AGL 152 (519)
Q Consensus 86 VSVII--P~~------ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t-~~i~~~l-~~~~~~~~~v~vv~---~~~ 152 (519)
+|||| |+. .++....+|++|+. ..+| .-|||+--=..+|-+ .+ ..++ ..+.|+. .+.... .+.
T Consensus 1 IsvVvQGpv~~~~~r~~~~~~t~~~l~siR-~~~P-~A~IILSTW~~~d~~~l~-~D~vv~s~DPG~-~~~~~~~~~~~~ 76 (311)
T PF07507_consen 1 ISVVVQGPVQAYQDRDQEPDITKNCLASIR-KHFP-GAEIILSTWEGQDISGLD-YDQVVISDDPGS-NVVLYKKDGKPG 76 (311)
T ss_pred CEEEEeCCccccccccccchhHHHHHHHHH-HhCC-CCEEEEECCCCCCcccCC-cceEEecCCCCc-ceeeccCCCCCc
Confidence 35666 776 56678999999985 5688 689877433333321 11 1111 2333442 111111 112
Q ss_pred CCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 153 STTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 153 ~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
+.+.|.....-.+|++++ +.+|++=+=+|..+..+-+-++...+.
T Consensus 77 ~~NiNrQi~St~aGL~~~--~~~Ya~KlRtD~~l~~~~~l~~~~~~~ 121 (311)
T PF07507_consen 77 PNNINRQIVSTLAGLKAA--KTKYAMKLRTDNRLTGNNFLDLYEKYP 121 (311)
T ss_pred ccchhHHHHHHHHHHHHh--CCceEEEEcccccccchHHHHHHHHhc
Confidence 234455555666899999 679999999999987765555555543
No 168
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=62.86 E-value=1.2e+02 Score=30.10 Aligned_cols=182 Identities=16% Similarity=0.170 Sum_probs=94.2
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCC-CCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKD-DVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~-~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
++|+|+. |-+.-+++.+....- -||++|.+..+-+. .+++...-.. .+++++.+.+.+.| =++|...|-
T Consensus 25 LlpV~~K-Pmi~y~l~~L~~aGI---~dI~II~~~~~~~~---~~~llGdgs~~gv~itY~~Q~~p~G---lA~Av~~a~ 94 (286)
T COG1209 25 LLPVYDK-PMIYYPLETLMLAGI---RDILIVVGPEDKPT---FKELLGDGSDFGVDITYAVQPEPDG---LAHAVLIAE 94 (286)
T ss_pred cceecCc-chhHhHHHHHHHcCC---ceEEEEecCCchhh---hhhhhcCccccCcceEEEecCCCCc---HHHHHHHHH
Confidence 6788885 578889999887643 36666655434332 3333322110 13677777766654 456666666
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhc--cc--cccccccCCCccc
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYH--MP--CSMGFATGGKTFF 243 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~ 243 (519)
+..+ +.++++++.+..... -+++.+..+++...-+.+-.+....|.+ + ...++. .. ...-....+.+..
T Consensus 95 ~fv~-~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga~i~~~~V~dP~r-f---GV~e~d~~~~v~~l~EKP~~P~SNl 167 (286)
T COG1209 95 DFVG-DDDFVLYLGDNIFQD--GLSELLEHFAEEGSGATILLYEVDDPSR-Y---GVVEFDEDGKVIGLEEKPKEPKSNL 167 (286)
T ss_pred hhcC-CCceEEEecCceecc--ChHHHHHHHhccCCCcEEEEEEcCCccc-c---eEEEEcCCCcEEEeEECCCCCCCce
Confidence 6664 368998888887777 5777788776422223344434444432 1 111111 00 0011111233335
Q ss_pred ccccchhccHhhhccccccCcccCCCCCcccHHHHHHHHHhCCCcEE
Q 010062 244 LWGGCMMMHADDFRLDRYGVVSGLRDGGYSDDMTLAALAGAHNRLIT 290 (519)
Q Consensus 244 ~~G~~~~~Rr~~~~~~~~Gg~~~~~~g~~~ED~~l~~~~~~~g~~v~ 290 (519)
+.-+-.+++.++| +.+--...-.+|. -|=++.-+..-..|..+.
T Consensus 168 AvtGlY~~d~~Vf--~~~~~ikPS~RGE-lEITd~i~~~i~~G~~~~ 211 (286)
T COG1209 168 AVTGLYFYDPSVF--EAIKQIKPSARGE-LEITDAIDLYIEKGYLVV 211 (286)
T ss_pred eEEEEEEeChHHH--HHHHcCCCCCCCc-eEehHHHHHHHHcCcEEE
Confidence 5556777888888 3332222211222 244444444444444444
No 169
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=61.31 E-value=1.1e+02 Score=28.25 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=60.3
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
.||-+-++.+......+.+..+.- ++|++=.+|+.+.+..+....+.........-+.+ .+...||.---.++..-+
T Consensus 5 ~vInL~~~~~Rr~~~~~~~~~~~~--~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~~~~~l-t~gEiGC~lSH~~~w~~~ 81 (200)
T PF01755_consen 5 YVINLDRSTERRERIQQQLAKLGI--NFEFFDAVDGRDLSEDELFRRYDPELFKKRYGRPL-TPGEIGCALSHIKAWQRI 81 (200)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCC--ceEEEEeecccccchHHHHHHhhhhhhhccccccC-CcceEeehhhHHHHHHHH
Confidence 355566666655555555554432 69998888887755433322221111100000111 122335543322333333
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEE
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQ 207 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V 207 (519)
-.. +.++++++-+|+.+.+++.+.+....+..+....+
T Consensus 82 v~~--~~~~~lIlEDDv~~~~~f~~~l~~~~~~~~~~~~l 119 (200)
T PF01755_consen 82 VDS--GLEYALILEDDVIFDPDFKEFLEEILSHIPDWDFL 119 (200)
T ss_pred HHc--CCCeEEEEeccccccccHHHHHHHHHhhcccccch
Confidence 322 34899999999999999777766655543334443
No 170
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=60.40 E-value=1.7e+02 Score=28.42 Aligned_cols=100 Identities=16% Similarity=0.026 Sum_probs=51.2
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCce-------------------EEEE
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDA-------------------KVVV 149 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v-------------------~vv~ 149 (519)
++|+-| .+.+..+|+++.+..- -+|++|.....+.-.+.+.+.....++ .++ ++..
T Consensus 24 llpv~g-~pii~~~l~~l~~~gi---~~i~iv~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (254)
T TIGR02623 24 MVEIGG-KPILWHIMKIYSHHGI---NDFIICCGYKGYVIKEYFANYFLHMSD-VTFHMADNTMEVHHKRVEPWRVTLVD 98 (254)
T ss_pred eeEECC-EEHHHHHHHHHHHCCC---CEEEEEcCCCHHHHHHHHHhhhhcccC-eeEEecccccccccccCCccceeeee
Confidence 566655 4588889998887633 367666654332222222221100011 011 1111
Q ss_pred cCCCCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 150 AGLSTTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 150 ~~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
...+ .+-.+++..+.+.. +.+.++++++|+..+.| +.++++...
T Consensus 99 ~~~~---~gt~~al~~~~~~i--~~e~flv~~gD~i~~~d-l~~~~~~h~ 142 (254)
T TIGR02623 99 TGES---TQTGGRLKRVREYL--DDEAFCFTYGDGVADID-IKALIAFHR 142 (254)
T ss_pred cCCc---CCcHHHHHHHHHhc--CCCeEEEEeCCeEecCC-HHHHHHHHH
Confidence 1111 22345566666665 23566799999987655 556666554
No 171
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=59.74 E-value=1.2e+02 Score=28.34 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccC-
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHK- 172 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~- 172 (519)
+..+.+..+++.+++..+. + +|+|. .++++-.+ .+.++. +.++..+..... . ......++.+...
T Consensus 22 ~gkpLi~~~i~~a~~s~~~-d-~IvVa--Td~~~i~~----~~~~~g----~~v~~~~~~~~~-~-~~r~~~~~~~~~~~ 87 (217)
T PF02348_consen 22 GGKPLIEYVIERAKQSKLI-D-EIVVA--TDDEEIDD----IAEEYG----AKVIFRRGSLAD-D-TDRFIEAIKHFLAD 87 (217)
T ss_dssp TTEEHHHHHHHHHHHTTTT-S-EEEEE--ESSHHHHH----HHHHTT----SEEEE--TTSSS-H-HHHHHHHHHHHTCS
T ss_pred CCccHHHHHHHHHHhCCCC-C-eEEEe--CCCHHHHH----HHHHcC----CeeEEcChhhcC-C-cccHHHHHHHhhhh
Confidence 3346899999999987765 2 54433 22222223 344443 344444333221 1 2223345555521
Q ss_pred CCcEEEEEcCCCc-cChHHHHHHHHHHHhCCC
Q 010062 173 DSKYVLFLDDDVR-LHPGTIGALTTEMEKNPE 203 (519)
Q Consensus 173 ~gd~vv~lDaD~~-~~pd~L~~lv~~l~~dp~ 203 (519)
..++++.+.+|+. ++|+.+.+++..+.++..
T Consensus 88 ~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~ 119 (217)
T PF02348_consen 88 DEDIVVRLQGDSPLLDPTSIDRAIEDIREANE 119 (217)
T ss_dssp TTSEEEEESTTETT--HHHHHHHHHHHHHSTT
T ss_pred HHhhccccCCeeeECCHHHHHHHHHHHhcCch
Confidence 1239999999986 699999999999987544
No 172
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=59.51 E-value=54 Score=32.50 Aligned_cols=99 Identities=19% Similarity=0.040 Sum_probs=46.6
Q ss_pred EEEeeccCCch-HHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHh-hcCCCCceEEEEcCCCC-------Ccc
Q 010062 87 TVVMPLKGFGE-HNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQ-EFKDDVDAKVVVAGLST-------TCS 157 (519)
Q Consensus 87 SVIIP~~ne~~-~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~-~~~~~~~v~vv~~~~~~-------~~~ 157 (519)
-|||++.+..- ....+|+.|....-.-+.||+..-+ +|-+.+..+++.. +.-..++++-+...... +..
T Consensus 3 GIVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~--~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~~~~~~~~~ 80 (271)
T PF11051_consen 3 GIVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGD--DDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGKSFSKKGFQ 80 (271)
T ss_pred EEEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCc--cccCHHHHHHHhhhhhhheecceEEeeccccccccccCCch
Confidence 37888887543 2335555554433222489876632 2223333444433 00000123322221111 222
Q ss_pred hhHHHHHHHHHhccCCCcEEEEEcCCCcc--ChHHHHH
Q 010062 158 QKIHNQLVGVENMHKDSKYVLFLDDDVRL--HPGTIGA 193 (519)
Q Consensus 158 ~K~~nl~~gl~~a~~~gd~vv~lDaD~~~--~pd~L~~ 193 (519)
-|.- |+-.. +-|=++++|||+.+ +|+.|-+
T Consensus 81 ~K~l----A~l~s--sFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 81 NKWL----ALLFS--SFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred hhhh----hhhhC--CcceEEEEcCCcccccCHHHHhc
Confidence 2332 22233 57889999999986 5554433
No 173
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=58.88 E-value=2e+02 Score=28.92 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=57.4
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHH-------------------HHhhcCCCCceEEEE
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLR-------------------LLQEFKDDVDAKVVV 149 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~-------------------l~~~~~~~~~v~vv~ 149 (519)
++|+.| .+.|...|+.+....- -|++++.....+.-.+.... +....+...+++++.
T Consensus 28 LvpV~g-kPiI~~vl~~l~~~Gi---~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (297)
T TIGR01105 28 MLPIVD-KPMIQYIVDEIVAAGI---KEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVR 103 (297)
T ss_pred eeEECC-EEHHHHHHHHHHHCCC---CEEEEEecCChHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEEee
Confidence 667766 4589999999987653 37777776543321111110 000001111455555
Q ss_pred cCCCCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccCh-------HHHHHHHHHHHh
Q 010062 150 AGLSTTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHP-------GTIGALTTEMEK 200 (519)
Q Consensus 150 ~~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~p-------d~L~~lv~~l~~ 200 (519)
...+.| -.+++..+.+... +.+++++. .|+..++ --+.++++.+++
T Consensus 104 q~~~lG---tg~Av~~a~~~l~-~~~flvv~-gD~l~~~~~~~~~~~~l~~li~~~~~ 156 (297)
T TIGR01105 104 QAQPLG---LGHSILCARPVVG-DNPFVVVL-PDIIIDDATADPLRYNLAAMIARFNE 156 (297)
T ss_pred CCCcCc---hHHHHHHHHHHhC-CCCEEEEE-CCeeccccccccchhHHHHHHHHHHH
Confidence 554444 3456666666653 34566655 8877764 378888887653
No 174
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=58.72 E-value=1e+02 Score=31.25 Aligned_cols=110 Identities=14% Similarity=0.106 Sum_probs=61.4
Q ss_pred EEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECC-CCCcHHHHHHHHHhhcCCCCceEEEE--cCCCC--Ccch--
Q 010062 86 VTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVES-KEDPAYHSVLRLLQEFKDDVDAKVVV--AGLST--TCSQ-- 158 (519)
Q Consensus 86 VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~-s~D~t~~i~~~l~~~~~~~~~v~vv~--~~~~~--~~~~-- 158 (519)
++|+.+-.+ -+.+..+|.|++.-.. .++.+.++.|+ .+|...+.++++...+......++.. -+... .++.
T Consensus 3 ~~vv~~g~~-~~~~~~~lkSil~~n~-~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~ 80 (304)
T cd06430 3 LAVVACGER-LEETLTMLKSAIVFSQ-KPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLF 80 (304)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHHhCC-CCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhcc
Confidence 667777666 4677888999876553 36888777776 66666666888765543321113322 22111 1111
Q ss_pred h-HHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHH
Q 010062 159 K-IHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEM 198 (519)
Q Consensus 159 K-~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l 198 (519)
| .--..-.+...-++-|-++.+|+|+..-.+ |+++-+.+
T Consensus 81 ~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~d-I~eL~~~~ 120 (304)
T cd06430 81 KPCAAQRLFLPSLLPDVDSLLYVDTDILFLRP-VEEIWSFL 120 (304)
T ss_pred cHHHHHHHHHHHHhhhhceEEEeccceeecCC-HHHHHHHH
Confidence 1 100001121111245899999999998665 55555544
No 175
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=58.61 E-value=38 Score=38.69 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=59.1
Q ss_pred EEEEee--ccCCch-HHHHHHHHHHhccCCCCeEEEEEECCCC---C--cHH-H-HHHHHHhhcC-CC--CceEEEEcCC
Q 010062 86 VTVVMP--LKGFGE-HNLLNWRSQVTSLYGGPLEFLFVVESKE---D--PAY-H-SVLRLLQEFK-DD--VDAKVVVAGL 152 (519)
Q Consensus 86 VSVIIP--~~ne~~-~L~~~L~Sl~~q~yp~~~eiIvV~d~s~---D--~t~-~-i~~~l~~~~~-~~--~~v~vv~~~~ 152 (519)
.+.|+. .|+... .-.+.++-|+ +.|| ++.|-.+|...+ + +.. . .++.-.+..+ +. ...|+--.+.
T Consensus 192 F~yVVs~Q~yg~~~~~~a~~i~~Lm-~~~P-~LrVAYide~~~~~~~~~~~yYS~Lv~~~~~~~~~g~~~~~yri~LpG~ 269 (817)
T PF02364_consen 192 FTYVVSCQRYGKFKKEEAEDIEFLM-RAYP-SLRVAYIDEVPDRNGGGEPEYYSVLVKGDCEIDENGKRQEIYRIKLPGN 269 (817)
T ss_pred CCEEEecchhcCCChHHHHHHHHHH-HhCC-ceEEEEEeeecccCCCCCceEEEEEecCCccccccCcccceEEEECCCC
Confidence 444443 454443 3444555554 5799 899998886542 1 110 0 1111000000 00 0122222233
Q ss_pred CCCcchhHHHHHHHHHhccCCCcEEEEEcCCC--ccChH-HHHHHHHHHHh
Q 010062 153 STTCSQKIHNQLVGVENMHKDSKYVLFLDDDV--RLHPG-TIGALTTEMEK 200 (519)
Q Consensus 153 ~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~--~~~pd-~L~~lv~~l~~ 200 (519)
+.-..||..|.|.++--. +||++..+|++- .++.- -++++++.|++
T Consensus 270 pilGeGK~eNQNhaiiF~--rGe~lQ~IDmNQDnYleE~lK~rnlL~Ef~~ 318 (817)
T PF02364_consen 270 PILGEGKPENQNHAIIFT--RGEYLQTIDMNQDNYLEEALKMRNLLEEFEE 318 (817)
T ss_pred CcCCCCCccccceeEEEE--ccccccccccchhhhHHHHHHHHHHHHHHHh
Confidence 333568999999999888 799999999863 23221 34567777874
No 176
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=58.58 E-value=1.3e+02 Score=29.11 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=57.6
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhcc-C
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMH-K 172 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~-~ 172 (519)
+..+.++.+|+.++.. |.=-|||++.+...|+..+..-+ .... . +++++..+... .....+|+++.. +
T Consensus 30 ~g~pll~~tl~~f~~~--~~i~~Ivvv~~~~~~~~~~~~~~--~~~~-~-~v~~v~GG~~R-----~~SV~~gL~~~~~~ 98 (230)
T COG1211 30 GGRPLLEHTLEAFLES--PAIDEIVVVVSPEDDPYFEKLPK--LSAD-K-RVEVVKGGATR-----QESVYNGLQALSKY 98 (230)
T ss_pred CCEEehHHHHHHHHhC--cCCCeEEEEEChhhhHHHHHhhh--hccC-C-eEEEecCCccH-----HHHHHHHHHHhhcc
Confidence 4556789999998764 31136677766666665433222 1111 1 67777765432 223334555542 1
Q ss_pred CCcEEEEEcCCC-ccChHHHHHHHHHHH
Q 010062 173 DSKYVLFLDDDV-RLHPGTIGALTTEME 199 (519)
Q Consensus 173 ~gd~vv~lDaD~-~~~pd~L~~lv~~l~ 199 (519)
+.++|++-|+== .++++.+.+++....
T Consensus 99 ~~~~VlvHDaaRPf~~~~~i~~li~~~~ 126 (230)
T COG1211 99 DSDWVLVHDAARPFLTPKLIKRLIELAD 126 (230)
T ss_pred CCCEEEEeccccCCCCHHHHHHHHHhhc
Confidence 479999999764 468899999995444
No 177
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=58.53 E-value=82 Score=29.48 Aligned_cols=97 Identities=9% Similarity=0.007 Sum_probs=52.2
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCC-CCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKD-DVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~-~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
++|+.|. +.+..+|+.+...... +++++.+... +.+++...+... ..++.++......|. .+++..+.
T Consensus 23 ll~~~g~-pli~~~l~~l~~~~~~---~iivv~~~~~----~~i~~~~~~~~~~~~~i~~~~~~~~~g~---~~~l~~~~ 91 (220)
T cd06426 23 MLKVGGK-PILETIIDRFIAQGFR---NFYISVNYLA----EMIEDYFGDGSKFGVNISYVREDKPLGT---AGALSLLP 91 (220)
T ss_pred cCeECCc-chHHHHHHHHHHCCCc---EEEEECccCH----HHHHHHHCCccccCccEEEEECCCCCcc---hHHHHHHH
Confidence 4566665 7899999999876443 5666655422 223333322111 113444433333332 33443222
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
+ . ..|.++++.+|...+. .+.++++.+.+
T Consensus 92 ~-~--~~~~~lv~~~D~i~~~-~~~~l~~~~~~ 120 (220)
T cd06426 92 E-K--PTDPFLVMNGDILTNL-NYEHLLDFHKE 120 (220)
T ss_pred h-h--CCCCEEEEcCCEeecc-CHHHHHHHHHh
Confidence 2 2 2467788899986655 46778887764
No 178
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=58.00 E-value=1.5e+02 Score=28.31 Aligned_cols=100 Identities=11% Similarity=0.066 Sum_probs=51.8
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+- ..+.+...|+++.+..-. ++++|..... .+.+++........ ++++...... ...|-.+++..+.+
T Consensus 25 llpv~-~~pli~~~l~~l~~~gi~---~i~vv~~~~~---~~~~~~~l~~~~~~-~~~i~~~~~~-~~~G~~~al~~a~~ 95 (240)
T cd02538 25 LLPVY-DKPMIYYPLSTLMLAGIR---EILIISTPED---LPLFKELLGDGSDL-GIRITYAVQP-KPGGLAQAFIIGEE 95 (240)
T ss_pred eeEEC-CEEhHHHHHHHHHHCCCC---EEEEEeCcch---HHHHHHHHhccccc-CceEEEeeCC-CCCCHHHHHHHHHH
Confidence 34554 467899999998875432 6666554322 11223322221111 3333332221 12334566766766
Q ss_pred hccCCCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 169 NMHKDSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
... .|-++++.+|....+.-+.+++....
T Consensus 96 ~~~--~~~~lv~~gD~~~~~~~~~~~~~~~~ 124 (240)
T cd02538 96 FIG--DDPVCLILGDNIFYGQGLSPILQRAA 124 (240)
T ss_pred hcC--CCCEEEEECCEEEccHHHHHHHHHHH
Confidence 663 34345557776665556777777654
No 179
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=57.94 E-value=72 Score=33.13 Aligned_cols=97 Identities=14% Similarity=0.058 Sum_probs=58.6
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCC
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKD 173 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~ 173 (519)
+..+.++..++.+... . -+++++..+.. +..++ ..+ ++.++.... .+..|-...+..|++.. +
T Consensus 30 ~Gkpll~~~i~~l~~~--~--~~iivvv~~~~----~~~~~---~~~---~~~~i~d~~-~g~~G~~~si~~gl~~~--~ 92 (366)
T PRK14489 30 GGKPLIERVVDRLRPQ--F--ARIHLNINRDP----ARYQD---LFP---GLPVYPDIL-PGFQGPLSGILAGLEHA--D 92 (366)
T ss_pred CCeeHHHHHHHHHHhh--C--CEEEEEcCCCH----HHHHh---hcc---CCcEEecCC-CCCCChHHHHHHHHHhc--C
Confidence 5677888888887632 1 25555444322 11222 112 233343322 23234456677888887 5
Q ss_pred CcEEEEEcCCC-ccChHHHHHHHHHHHhCCCeEEEE
Q 010062 174 SKYVLFLDDDV-RLHPGTIGALTTEMEKNPEIFIQT 208 (519)
Q Consensus 174 gd~vv~lDaD~-~~~pd~L~~lv~~l~~dp~vg~V~ 208 (519)
.|+++++++|. .++++.++++++.+.. .+..++.
T Consensus 93 ~~~vlv~~~D~P~i~~~~i~~L~~~~~~-~~~~~v~ 127 (366)
T PRK14489 93 SEYLFVVACDTPFLPENLVKRLSKALAI-EGADIAV 127 (366)
T ss_pred CCcEEEeeCCcCCCCHHHHHHHHHHhhc-cCCeEEE
Confidence 68999999997 5799999999998754 4444443
No 180
>PLN03153 hypothetical protein; Provisional
Probab=57.21 E-value=37 Score=36.67 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=57.1
Q ss_pred HHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccCCCCChhhHHHHhhccccccccccCCCccccc
Q 010062 166 GVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKTFFLW 245 (519)
Q Consensus 166 gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (519)
.++...++.++++|+|||+.+.++-|.++++.++. .+--.++. .......+ ..+. .....-
T Consensus 203 t~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDp-tkp~YIGs-~Se~~~qn--------------~~f~---~~fA~G 263 (537)
T PLN03153 203 SFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDP-SEMVYVGG-PSESHSAN--------------SYFS---HNMAFG 263 (537)
T ss_pred HHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCC-CCCEEecc-cccccccc--------------cccc---cccccC
Confidence 34443456799999999999988878777777753 22222222 11110000 0000 000122
Q ss_pred ccchhccHhhhccccc-cCcccCC---CCCcccHHHHHHHHHhCCCcEEecCc
Q 010062 246 GGCMMMHADDFRLDRY-GVVSGLR---DGGYSDDMTLAALAGAHNRLITSPPV 294 (519)
Q Consensus 246 G~~~~~Rr~~~~~~~~-Gg~~~~~---~g~~~ED~~l~~~~~~~g~~v~~~~~ 294 (519)
|+.+++.+.+.++ + ..++.-. ...+++|..+++-+.+.|..+...+.
T Consensus 264 GAG~~LSrPLae~--L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~g 314 (537)
T PLN03153 264 GGGIAISYPLAEA--LSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPG 314 (537)
T ss_pred CceEEEcHHHHHH--HHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCC
Confidence 5567788844411 1 0111111 11467999999977788866665543
No 181
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=56.42 E-value=1.6e+02 Score=26.88 Aligned_cols=35 Identities=11% Similarity=0.023 Sum_probs=27.3
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHH
Q 010062 162 NQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEM 198 (519)
Q Consensus 162 nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l 198 (519)
-.+...+.. +-++.+++|+.+.+.++.|-.|.++|
T Consensus 129 fFnaf~~~l--~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 129 FFNAFCRQL--QPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred HHHHHHhhc--CCcEEEEEecCCCcCchHHHHHHhhC
Confidence 444445556 45899999999999999999887654
No 182
>PHA01631 hypothetical protein
Probab=54.73 E-value=19 Score=32.57 Aligned_cols=70 Identities=9% Similarity=0.151 Sum_probs=37.3
Q ss_pred CeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhcc-CCCcEEEEEcCCCccChH
Q 010062 114 PLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMH-KDSKYVLFLDDDVRLHPG 189 (519)
Q Consensus 114 ~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~-~~gd~vv~lDaD~~~~pd 189 (519)
+++.|+|||+=+|-|.-.+ .++.. ++-....+.....-+-+..|...+.... -..|+++++|||..+++-
T Consensus 17 ~~D~V~VD~~~~~~~~c~~----~~~~~--~Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~ 87 (176)
T PHA01631 17 DFDYVVVDKTFNDMTECQI----PKYQE--KIIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNL 87 (176)
T ss_pred cccEEEEcccccccccccc----cccCC--ceEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecCc
Confidence 5788888888777542111 11111 3333332222222223345555655321 145888999999998873
No 183
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=54.39 E-value=1.7e+02 Score=31.11 Aligned_cols=101 Identities=14% Similarity=0.039 Sum_probs=60.2
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+.| .+.++..++++....- -+++++..... +.+++.... . +++++..+...| -..++..+.+
T Consensus 27 l~~i~g-kpli~~~i~~l~~~gi---~~i~vv~~~~~----~~i~~~~~~---~-~~~~i~~~~~~G---t~~al~~a~~ 91 (456)
T PRK09451 27 LHTLAG-KPMVQHVIDAANELGA---QHVHLVYGHGG----DLLKQTLAD---E-PLNWVLQAEQLG---TGHAMQQAAP 91 (456)
T ss_pred cceeCC-hhHHHHHHHHHHhcCC---CcEEEEECCCH----HHHHHhhcc---C-CcEEEECCCCCC---cHHHHHHHHH
Confidence 456555 6788888998876533 26666665322 222232221 1 466665544333 3456666666
Q ss_pred hccCCCcEEEEEcCCC-ccChHHHHHHHHHHHhCCCeEE
Q 010062 169 NMHKDSKYVLFLDDDV-RLHPGTIGALTTEMEKNPEIFI 206 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~-~~~pd~L~~lv~~l~~dp~vg~ 206 (519)
... +.+.++++++|. .+.++.+.++++...+ .++.+
T Consensus 92 ~l~-~~~~vlV~~gD~P~i~~~~i~~l~~~~~~-~~~~i 128 (456)
T PRK09451 92 FFA-DDEDILMLYGDVPLISVETLQRLRDAKPQ-GGIGL 128 (456)
T ss_pred hhc-cCCcEEEEeCCcccCCHHHHHHHHHHhhc-CCEEE
Confidence 553 247889999998 5788899998876543 44443
No 184
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=54.38 E-value=32 Score=37.00 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=69.4
Q ss_pred CCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECC--CCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhH
Q 010062 83 LPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVES--KEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKI 160 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~--s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~ 160 (519)
.-..|.++-+||+-+.|...+....+- |.--+|+||=++ ..-| .+..+... . +.+++.+..++ |.
T Consensus 442 ~qgFTlim~TYdR~d~L~k~v~~ys~v--PsL~kIlVVWNnq~k~PP-~es~~~~~----~-VPlr~r~qkeN-----sL 508 (691)
T KOG1022|consen 442 SQGFTLIMLTYDRVDLLKKLVKHYSRV--PSLKKILVVWNNQGKNPP-PESLEPDI----A-VPLRFRQQKEN-----SL 508 (691)
T ss_pred ccceeeeeehHHHHHHHHHHHHHHhhC--CCcceEEEEecCCCCCCC-hhhccccC----C-ccEEEEehhhh-----hh
Confidence 446999999999888888888776543 522455555453 2222 22222211 1 24565554332 33
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 010062 161 HNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTG 209 (519)
Q Consensus 161 ~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g 209 (519)
+|--.-.... ++|-|+-+|+|+.++-|-|.---+-.++.|+ -+|+=
T Consensus 509 nNRF~~~pei--eT~AVL~IDDDIim~~ddldFgf~VWrefPD-~lVGF 554 (691)
T KOG1022|consen 509 NNRFEPYPEI--ETEAVLEIDDDIIMPCDDLDFGFEVWREFPD-RLVGF 554 (691)
T ss_pred hcccccCccc--ccceeEEecCceeeecchhHHHHHHHHhCcc-ceecc
Confidence 4433444455 5799999999999999888887777777787 35543
No 185
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=54.36 E-value=39 Score=28.11 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhccCCCCeEEEEEECC-CCCcHHHHHHHHHhhcCCC
Q 010062 98 HNLLNWRSQVTSLYGGPLEFLFVVES-KEDPAYHSVLRLLQEFKDD 142 (519)
Q Consensus 98 ~L~~~L~Sl~~q~yp~~~eiIvV~d~-s~D~t~~i~~~l~~~~~~~ 142 (519)
.=...|+.++ ++|| +..+|+|=|+ ..| .++-.++++++|++
T Consensus 50 ~K~~~i~~i~-~~fP-~~kfiLIGDsgq~D--peiY~~ia~~~P~~ 91 (100)
T PF09949_consen 50 HKRDNIERIL-RDFP-ERKFILIGDSGQHD--PEIYAEIARRFPGR 91 (100)
T ss_pred HHHHHHHHHH-HHCC-CCcEEEEeeCCCcC--HHHHHHHHHHCCCC
Confidence 4455666666 5689 6666655554 455 56778889999984
No 186
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=52.24 E-value=1.9e+02 Score=29.89 Aligned_cols=52 Identities=12% Similarity=-0.051 Sum_probs=35.9
Q ss_pred CCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHH
Q 010062 83 LPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLR 134 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~ 134 (519)
.+.+-|||=++|..+.++..|+||.+...-.+..+||--|.-+++-.++++.
T Consensus 30 ~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 30 NDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHh
Confidence 3578899999999999999999998886653344444334444444444443
No 187
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=51.57 E-value=1.3e+02 Score=28.93 Aligned_cols=107 Identities=13% Similarity=0.092 Sum_probs=49.7
Q ss_pred EEEEeeccC-CchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCc--chhHHH
Q 010062 86 VTVVMPLKG-FGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTC--SQKIHN 162 (519)
Q Consensus 86 VSVIIP~~n-e~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~--~~K~~n 162 (519)
++-+|-+|+ ..+.+...++.+- .|.+.=+|.||-.+++...+.++++...++ +++++.......+ -..+.|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~---~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~---nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY---HPDNDFYIHIDKKSPDYFYEEIKKLISCFP---NVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH-----TTSEEEEEE-TTS-HHHHHHHHHHHCT-T---TEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc---CCCCEEEEEEcCCCChHHHHHHHHhcccCC---ceeecccccccccCCccHHHH
Confidence 356777866 5455555555544 343444456666666665565666666665 5766653333222 223444
Q ss_pred HHHHHHhcc---CCCcEEEEEcCCCcc--ChHHHHHHHHHHHhC
Q 010062 163 QLVGVENMH---KDSKYVLFLDDDVRL--HPGTIGALTTEMEKN 201 (519)
Q Consensus 163 l~~gl~~a~---~~gd~vv~lDaD~~~--~pd~L~~lv~~l~~d 201 (519)
...+++.|- .+.|+++.+-.++.+ +.+.| .+.|+.+
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i---~~~l~~~ 115 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEI---HEFLESN 115 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHH---HHHHHHT
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHH---HHHHHhc
Confidence 444444432 146777777666654 33444 4555544
No 188
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=49.68 E-value=2.1e+02 Score=27.73 Aligned_cols=103 Identities=13% Similarity=0.030 Sum_probs=57.2
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHH------HHHhhc------------CCCCceEEEEc
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVL------RLLQEF------------KDDVDAKVVVA 150 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~------~l~~~~------------~~~~~v~vv~~ 150 (519)
++|+.|. +.|...|+++.+.... +++++.....+.-.+-+. ....+. |....+.++..
T Consensus 25 llpv~gk-pli~~~l~~l~~~gi~---~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (267)
T cd02541 25 MLPIVDK-PVIQYIVEEAVAAGIE---DIIIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQ 100 (267)
T ss_pred eeEECCE-EHHHHHHHHHHHCCCC---EEEEEeCCchHHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEEEc
Confidence 5677665 8999999999886443 666666653322111110 000010 10113444444
Q ss_pred CCCCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccChH--HHHHHHHHHHh
Q 010062 151 GLSTTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPG--TIGALTTEMEK 200 (519)
Q Consensus 151 ~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd--~L~~lv~~l~~ 200 (519)
+... |-+.++..+.+... .+-++++.+|.....+ .+.++++...+
T Consensus 101 ~~~~---Gt~~al~~~~~~i~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~ 147 (267)
T cd02541 101 KEPL---GLGHAVLCAKPFIG--DEPFAVLLGDDLIDSKEPCLKQLIEAYEK 147 (267)
T ss_pred CCCC---ChHHHHHHHHHHhC--CCceEEEECCeEEeCCchHHHHHHHHHHH
Confidence 3333 34566667777663 3556667788776543 68999987764
No 189
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=49.66 E-value=2.4e+02 Score=30.37 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=53.9
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+-|..+.+..+++.+..... -++++|.+... ...+++...++... ..+++..+...+..+... .+..
T Consensus 26 ~l~l~g~~~ll~~tl~~l~~~~~---~~iviv~~~~~---~~~~~~~l~~~~~~-~~~~i~Ep~~~gTa~ai~---~aa~ 95 (468)
T TIGR01479 26 FLALVGDLTMLQQTLKRLAGLPC---SSPLVICNEEH---RFIVAEQLREIGKL-ASNIILEPVGRNTAPAIA---LAAL 95 (468)
T ss_pred eeEcCCCCcHHHHHHHHHhcCCC---cCcEEecCHHH---HHHHHHHHHHcCCC-cceEEecccccCchHHHH---HHHH
Confidence 45666777889999999887642 25555543321 22333333444211 235665555444433222 1212
Q ss_pred hc-c--CCCcEEEEEcCCCccC-hHHHHHHHHHH
Q 010062 169 NM-H--KDSKYVLFLDDDVRLH-PGTIGALTTEM 198 (519)
Q Consensus 169 ~a-~--~~gd~vv~lDaD~~~~-pd~L~~lv~~l 198 (519)
.. + ...++++++-+|..+. ++.+.++++..
T Consensus 96 ~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~ 129 (468)
T TIGR01479 96 LAARRNGEDPLLLVLAADHVITDEDAFQAAVKLA 129 (468)
T ss_pred HHHHHHCCCcEEEEecCceeecCHHHHHHHHHHH
Confidence 11 1 1346899999997764 46677776643
No 190
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=49.14 E-value=1.7e+02 Score=26.52 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=53.0
Q ss_pred EEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHH
Q 010062 87 TVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVG 166 (519)
Q Consensus 87 SVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~g 166 (519)
...=|++.--+.+.+..+.+.+.++ ++|||+|..|.+ .+-..+...+++. +-..+.-+. .+..-+..-
T Consensus 43 ~wC~pCR~FTP~Lk~fYe~l~~~~~--~fEVvfVS~D~~---~~~~~~y~~~~~~--~W~~iPf~d-----~~~~~l~~k 110 (157)
T KOG2501|consen 43 HWCPPCRDFTPILKDFYEELKDNAA--PFEVVFVSSDRD---EESLDEYMLEHHG--DWLAIPFGD-----DLIQKLSEK 110 (157)
T ss_pred EECCchhhCCchHHHHHHHHHhcCC--ceEEEEEecCCC---HHHHHHHHHhcCC--CeEEecCCC-----HHHHHHHHh
Confidence 3334788888899999999988777 499999965544 3334555555443 233333221 122222222
Q ss_pred HHhccCCCcEEEEEcCCC-ccChHHHHHHH
Q 010062 167 VENMHKDSKYVLFLDDDV-RLHPGTIGALT 195 (519)
Q Consensus 167 l~~a~~~gd~vv~lDaD~-~~~pd~L~~lv 195 (519)
.... .=+-+++++.|- .++.|.-..+.
T Consensus 111 y~v~--~iP~l~i~~~dG~~v~~d~r~~v~ 138 (157)
T KOG2501|consen 111 YEVK--GIPALVILKPDGTVVTEDARLLVQ 138 (157)
T ss_pred cccC--cCceeEEecCCCCEehHhhHHHHH
Confidence 2222 235666777665 45555444433
No 191
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=48.19 E-value=1.6e+02 Score=28.72 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=61.7
Q ss_pred CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcC--C--CCCcchh--HHHHH-HH
Q 010062 94 GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAG--L--STTCSQK--IHNQL-VG 166 (519)
Q Consensus 94 ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~--~--~~~~~~K--~~nl~-~g 166 (519)
+....+.-++.|++... ..++.+.+++|+-++...+.++++.+++.. .++++.-. . ......+ ..+.. ..
T Consensus 11 ~y~~~~~v~l~Sll~nn-~~~~~fyil~~~is~e~~~~l~~~~~~~~~--~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~ 87 (248)
T cd06432 11 LYERFLRIMMLSVMKNT-KSPVKFWFIKNFLSPQFKEFLPEMAKEYGF--EYELVTYKWPRWLHKQTEKQRIIWGYKILF 87 (248)
T ss_pred HHHHHHHHHHHHHHHcC-CCCEEEEEEeCCCCHHHHHHHHHHHHHhCC--ceEEEEecChhhhhcccccchhHHHHHHHH
Confidence 33467888999999875 346999999998888888889998888764 45554432 1 0001111 11111 11
Q ss_pred HH-hccCCCcEEEEEcCCCccChHHHHHHHH
Q 010062 167 VE-NMHKDSKYVLFLDDDVRLHPGTIGALTT 196 (519)
Q Consensus 167 l~-~a~~~gd~vv~lDaD~~~~pd~L~~lv~ 196 (519)
+. ....+-|=++.+|+|+.+-.+ |+++..
T Consensus 88 ~~~lLP~~vdkvLYLD~Dilv~~d-L~eL~~ 117 (248)
T cd06432 88 LDVLFPLNVDKVIFVDADQIVRTD-LKELMD 117 (248)
T ss_pred HHHhhhhccCEEEEEcCCceeccc-HHHHHh
Confidence 12 121246899999999988744 666654
No 192
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=48.00 E-value=55 Score=31.05 Aligned_cols=95 Identities=13% Similarity=0.125 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhccCC-CCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCC------------CCcchh-HHH
Q 010062 97 EHNLLNWRSQVTSLYG-GPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLS------------TTCSQK-IHN 162 (519)
Q Consensus 97 ~~L~~~L~Sl~~q~yp-~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~------------~~~~~K-~~n 162 (519)
+.+..++.|+...... .++.+.+++|+.+++..+.+++...+.. .+..+..... .....+ ...
T Consensus 12 ~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T PF01501_consen 12 EGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVI---EIEPIEFPDISMLEEFQFNSPSKRHFSPATFA 88 (250)
T ss_dssp HHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCC---TTECEEETSGGHHH--TTS-HCCTCGGGGGGG
T ss_pred HHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhccccc---ceeeeccchHHhhhhhhhcccccccccHHHHH
Confidence 4677788888877653 3688888888877666666655544433 2222221110 000001 001
Q ss_pred HHHHHHhccCCCcEEEEEcCCCccChHHHHHHHH
Q 010062 163 QLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTT 196 (519)
Q Consensus 163 l~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~ 196 (519)
-....+.- .+.|-++++|+|+.+-.+ |.++-.
T Consensus 89 rl~i~~ll-~~~drilyLD~D~lv~~d-l~~lf~ 120 (250)
T PF01501_consen 89 RLFIPDLL-PDYDRILYLDADTLVLGD-LDELFD 120 (250)
T ss_dssp GGGHHHHS-TTSSEEEEE-TTEEESS--SHHHHC
T ss_pred HhhhHHHH-hhcCeEEEEcCCeeeecC-hhhhhc
Confidence 11122331 267999999999998654 444444
No 193
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=47.00 E-value=62 Score=30.79 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcc-----CCCcEEEEEcCCCccChHHHHHH
Q 010062 160 IHNQLVGVENMH-----KDSKYVLFLDDDVRLHPGTIGAL 194 (519)
Q Consensus 160 ~~nl~~gl~~a~-----~~gd~vv~lDaD~~~~pd~L~~l 194 (519)
..+-|.|++..+ ...-+|.|.|+|..++-+..++|
T Consensus 59 ~~qRn~AL~~ir~~~~~~~~GVVyFaDDdNtYdl~LF~em 98 (207)
T PF03360_consen 59 VHQRNAALRWIRNNANHRLDGVVYFADDDNTYDLRLFDEM 98 (207)
T ss_dssp HHHHHHHHHHHHSTTTSSS-EEEEE--TTSEE-HHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCcEEEECCCCCeeeHHHHHHH
Confidence 334455555442 23468999999999999888774
No 194
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=45.86 E-value=38 Score=36.57 Aligned_cols=92 Identities=23% Similarity=0.228 Sum_probs=63.4
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCC-CceEEEEcCCCCCcchhHHHH
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDD-VDAKVVVAGLSTTCSQKIHNQ 163 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~-~~v~vv~~~~~~~~~~K~~nl 163 (519)
-.+|++-+|..++.+-..|+.+-..-|- -.||||=|+..||..+. .+|+. +.+.++...++.- ||-
T Consensus 650 QFTvVmLTYERe~VLm~sLeRL~gLPYL--nKvvVVWNspk~P~ddl------~WPdigvPv~viR~~~NsL-----NNR 716 (907)
T KOG2264|consen 650 QFTVVMLTYEREAVLMGSLERLHGLPYL--NKVVVVWNSPKDPPDDL------TWPDIGVPVEVIRVAENSL-----NNR 716 (907)
T ss_pred eEEEEEEEehHHHHHHHHHHHhhCCccc--ceEEEEeCCCCCChhcc------cCcCCCCceEEEEcccccc-----ccc
Confidence 3899999999999999999999888886 26667778878775432 34543 3566666544321 121
Q ss_pred HHHHHhccCCCcEEEEEcCCCccChHHH
Q 010062 164 LVGVENMHKDSKYVLFLDDDVRLHPGTI 191 (519)
Q Consensus 164 ~~gl~~a~~~gd~vv~lDaD~~~~pd~L 191 (519)
-.-+... +.|-|+-+|+|..+.-|-+
T Consensus 717 FlPwd~I--ETEAvLS~DDDahLrhdEI 742 (907)
T KOG2264|consen 717 FLPWDRI--ETEAVLSLDDDAHLRHDEI 742 (907)
T ss_pred ccCchhh--hheeeeecccchhhhhhhe
Confidence 1233445 6799999999988765543
No 195
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=45.52 E-value=2.6e+02 Score=26.17 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=54.3
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcC--CCCceEEEEcCCCCCcchhHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFK--DDVDAKVVVAGLSTTCSQKIHNQLVG 166 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~--~~~~v~vv~~~~~~~~~~K~~nl~~g 166 (519)
++|+-|. +.+..+++.+..... -|+++|..... .+.+++...+++ ......++..... ...|-..++..+
T Consensus 25 Llpv~g~-pli~~~l~~l~~~g~---~~iivv~~~~~---~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~~gt~~al~~~ 96 (214)
T cd04198 25 LLPVANK-PMIWYPLDWLEKAGF---EDVIVVVPEEE---QAEISTYLRSFPLNLKQKLDEVTIVLD-EDMGTADSLRHI 96 (214)
T ss_pred cCEECCe-eHHHHHHHHHHHCCC---CeEEEEECHHH---HHHHHHHHHhcccccCcceeEEEecCC-CCcChHHHHHHH
Confidence 5666665 889999999887533 36766665321 233444444331 1002223222211 223345666666
Q ss_pred HHhccCCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 167 VENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 167 l~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
.+.. +.+ ++++.+|...+. -+.++++.+.+
T Consensus 97 ~~~i--~~d-~lv~~~D~i~~~-~l~~~l~~h~~ 126 (214)
T cd04198 97 RKKI--KKD-FLVLSCDLITDL-PLIELVDLHRS 126 (214)
T ss_pred Hhhc--CCC-EEEEeCcccccc-CHHHHHHHHhc
Confidence 6655 334 677888865544 46677776654
No 196
>PRK10122 GalU regulator GalF; Provisional
Probab=44.36 E-value=3.4e+02 Score=27.16 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=57.4
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHH-------------------HHHHhhcCCCCceEEEE
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSV-------------------LRLLQEFKDDVDAKVVV 149 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~-------------------~~l~~~~~~~~~v~vv~ 149 (519)
++|+-|. +.|...++++.+..-. +|+++.....+.-.+-+ +++....+...+++.+.
T Consensus 28 llpi~gk-piI~~~l~~l~~~Gi~---~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~ 103 (297)
T PRK10122 28 MLPIVDK-PMIQYIVDEIVAAGIK---EIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVR 103 (297)
T ss_pred eeEECCE-EHHHHHHHHHHHCCCC---EEEEEcCCChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEEEee
Confidence 6677776 8999999999986543 66666544221111111 11111111111455555
Q ss_pred cCCCCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccChH-------HHHHHHHHHHh
Q 010062 150 AGLSTTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPG-------TIGALTTEMEK 200 (519)
Q Consensus 150 ~~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd-------~L~~lv~~l~~ 200 (519)
...+.| -.+++..+..... +.+++++. .|+..+++ -+.++++...+
T Consensus 104 q~~~lG---tg~al~~a~~~l~-~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~ 156 (297)
T PRK10122 104 QGQPLG---LGHSILCARPAIG-DNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNE 156 (297)
T ss_pred cCCcCc---hHHHHHHHHHHcC-CCCEEEEE-CCeeccCccccccchhHHHHHHHHHH
Confidence 544433 4566766766653 35677766 77777543 47888887654
No 197
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=43.62 E-value=2.8e+02 Score=26.72 Aligned_cols=102 Identities=10% Similarity=-0.062 Sum_probs=53.2
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHH-------------------HHHhhcCCCCceEEEE
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVL-------------------RLLQEFKDDVDAKVVV 149 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~-------------------~l~~~~~~~~~v~vv~ 149 (519)
++|+-+. +.|...|+++....- -+++++.....+.-.+.+. +...-.+. .++....
T Consensus 25 llpi~g~-pli~~~l~~l~~~gi---~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~ 99 (260)
T TIGR01099 25 MLPIVDK-PLIQYVVEEAVEAGI---EDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPL-ATIFYVR 99 (260)
T ss_pred eEEECCE-EHHHHHHHHHHhCCC---CEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhHHHHHHhhhcccc-ceEEEEe
Confidence 5677676 889999999887533 2666666544321111111 00000011 1233332
Q ss_pred cCCCCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccCh--HHHHHHHHHHHh
Q 010062 150 AGLSTTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHP--GTIGALTTEMEK 200 (519)
Q Consensus 150 ~~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~p--d~L~~lv~~l~~ 200 (519)
..... |-.+++..+.+... .+-++++.+|..+.. +-+.++++...+
T Consensus 100 ~~~~~---G~~~al~~~~~~~~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~ 147 (260)
T TIGR01099 100 QKEQK---GLGHAVLCAEPFVG--DEPFAVILGDDIVVSEEPALKQMIDLYEK 147 (260)
T ss_pred cCCCC---CHHHHHHHHHHhhC--CCCEEEEeccceecCCcHHHHHHHHHHHH
Confidence 32222 34556666766652 244556666666554 378888887764
No 198
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=41.70 E-value=2.8e+02 Score=25.91 Aligned_cols=84 Identities=8% Similarity=-0.021 Sum_probs=50.5
Q ss_pred CCchHHHHHHHHH------HhccCCCCeEEEEEECCC----------CCcHHHHHHHHHh----hcCCCCceEEEEcCCC
Q 010062 94 GFGEHNLLNWRSQ------VTSLYGGPLEFLFVVESK----------EDPAYHSVLRLLQ----EFKDDVDAKVVVAGLS 153 (519)
Q Consensus 94 ne~~~L~~~L~Sl------~~q~yp~~~eiIvV~d~s----------~D~t~~i~~~l~~----~~~~~~~v~vv~~~~~ 153 (519)
+.+.++.+.|+.| -.-+.|..+|+++-.+.+ .||..+..+++.. -.|. ..|+..+
T Consensus 80 ~dEtYlp~LL~kLW~kyGr~~V~QP~Rf~I~i~~~~~~~~~i~dlvV~Dp~~~l~~~v~da~~RI~PE--GFRVr~~--- 154 (188)
T PF09886_consen 80 EDETYLPDLLKKLWEKYGRENVDQPDRFEIIIDSDIDEAKDIEDLVVYDPSEDLKKKVYDAMFRIAPE--GFRVRRH--- 154 (188)
T ss_pred cccchHHHHHHHHHHHhCccccCCCCceEEEecCCcccccchhhcEEECcHHHHHHHHHHHHHHhCCC--ccEEeec---
Confidence 4445788888888 455678678886443332 2454444444322 2232 2222111
Q ss_pred CCcchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 154 TTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 154 ~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
. ..++-++|+=|+..+.++|+......++
T Consensus 155 ----------------~-~~~~~f~~vASE~~i~~ewi~~a~e~~~ 183 (188)
T PF09886_consen 155 ----------------Y-YEGNSFAFVASEETIKDEWIEEAKEMIE 183 (188)
T ss_pred ----------------c-ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 1578999999999999999977666554
No 199
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=40.57 E-value=4.1e+02 Score=28.28 Aligned_cols=103 Identities=13% Similarity=0.050 Sum_probs=58.3
Q ss_pred CCCCcEEEEeecc-CCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHH------hhcCCCCceEEEEcCCC
Q 010062 81 IKLPRVTVVMPLK-GFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLL------QEFKDDVDAKVVVAGLS 153 (519)
Q Consensus 81 ~~~P~VSVIIP~~-ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~------~~~~~~~~v~vv~~~~~ 153 (519)
...|+.+-+|-.+ |+.+.+++.|+++- .|.+.=+|-+|-.+++.....+.... ..++ +|.++.....
T Consensus 75 ~~~~r~AYLI~~h~~d~~~l~RLL~aLY---hprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~---NV~vl~k~~~ 148 (421)
T PLN03183 75 DKLPRFAYLVSGSKGDLEKLWRTLRALY---HPRNQYVVHLDLESPAEERLELASRVENDPMFSKVG---NVYMITKANL 148 (421)
T ss_pred CCCCeEEEEEEecCCcHHHHHHHHHHhc---CCCceEEEEecCCCChHHHHHHHHHhhccchhhccC---cEEEEeccee
Confidence 3578999999988 77688888887664 35344445566666654332222222 2233 6777654322
Q ss_pred CCcc--hhHHHHH----HHHHhccCCCcEEEEEcCCCcc--ChHH
Q 010062 154 TTCS--QKIHNQL----VGVENMHKDSKYVLFLDDDVRL--HPGT 190 (519)
Q Consensus 154 ~~~~--~K~~nl~----~gl~~a~~~gd~vv~lDaD~~~--~pd~ 190 (519)
..++ .-+.|.. ..++.+ .+.||++.+-+.+.+ ..|.
T Consensus 149 V~WGG~S~V~AtL~~m~~LL~~~-~~WDyfinLSGsDyPLkTqde 192 (421)
T PLN03183 149 VTYRGPTMVANTLHACAILLKRS-KDWDWFINLSASDYPLVTQDD 192 (421)
T ss_pred eccCChHHHHHHHHHHHHHHhhC-CCCCEEEEccCCcccccCHHH
Confidence 2221 1222222 333433 367999999988876 4454
No 200
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=39.58 E-value=3.2e+02 Score=25.53 Aligned_cols=99 Identities=9% Similarity=0.038 Sum_probs=51.7
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCC------CceEEEEcCCCCCcchhHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDD------VDAKVVVAGLSTTCSQKIHN 162 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~------~~v~vv~~~~~~~~~~K~~n 162 (519)
++|+-|. +-|...|+++.+..- -+|+++.+...+ .+++...+.... ..+.++......+.+ .+
T Consensus 25 llpi~g~-piI~~~l~~l~~~Gi---~~I~iv~~~~~~----~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~---~a 93 (217)
T cd04197 25 LLPLANV-PLIDYTLEFLALNGV---EEVFVFCCSHSD----QIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLG---DA 93 (217)
T ss_pred eeEECCE-ehHHHHHHHHHHCCC---CeEEEEeCCCHH----HHHHHHhhccccccccCcceEEEEeCCCcCccc---hH
Confidence 6777777 799999999988643 367777664332 233333322110 134444443332222 22
Q ss_pred HHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 163 QLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 163 l~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
+.. +.....-.+.++++.+|...+.+ +.++++...+
T Consensus 94 l~~-~~~~~~~~~~flv~~gD~i~~~d-l~~~l~~h~~ 129 (217)
T cd04197 94 LRD-LDAKGLIRGDFILVSGDVVSNID-LKEILEEHKE 129 (217)
T ss_pred HHH-HhhccccCCCEEEEeCCeeeccC-HHHHHHHHHH
Confidence 211 11110012345688999887665 5666666653
No 201
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=39.43 E-value=2.1e+02 Score=29.51 Aligned_cols=103 Identities=10% Similarity=0.003 Sum_probs=56.0
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCC------CceEEE--Ec--CCCCCcch
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDD------VDAKVV--VA--GLSTTCSQ 158 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~------~~v~vv--~~--~~~~~~~~ 158 (519)
++|+-|..+.|...|+.+.+.... +++++.....+ .+++...+.... ..++++ .. ..+....|
T Consensus 28 llpv~gk~pli~~~l~~l~~~Gi~---~i~iv~~~~~~----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G 100 (380)
T PRK05293 28 AVPFGGKYRIIDFTLSNCANSGID---TVGVLTQYQPL----ELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKG 100 (380)
T ss_pred eeeeCCceeehhHHHHHHHhCCCC---EEEEEecCCHH----HHHHHHhCCCcccccCCCCCEEEeCCcccCCCCcccCC
Confidence 678877767899999999876443 66666654332 233322211100 023443 11 11101123
Q ss_pred hHHHHHHHHHhccC-CCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 159 KIHNQLVGVENMHK-DSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 159 K~~nl~~gl~~a~~-~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
-++++..+.+.... +.|.++++.+|+..+.+.. ++++...
T Consensus 101 ta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~-~ll~~h~ 141 (380)
T PRK05293 101 TAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYD-KMLDYHK 141 (380)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHH-HHHHHHH
Confidence 35666666665421 2378899999998776644 5555443
No 202
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=39.24 E-value=4.1e+02 Score=28.76 Aligned_cols=100 Identities=10% Similarity=0.036 Sum_probs=52.9
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+.++.+.+..+++.+.....+ +.++|.+. .-.+.+++-..+.+.. ..+++..+...+..+ ++..|..
T Consensus 31 ~l~l~~~~sllq~t~~r~~~~~~~---~~iivt~~---~~~~~v~~ql~~~~~~-~~~ii~EP~~rnTAp---aialaa~ 100 (478)
T PRK15460 31 FLCLKGDLTMLQTTICRLNGVECE---SPVVICNE---QHRFIVAEQLRQLNKL-TENIILEPAGRNTAP---AIALAAL 100 (478)
T ss_pred eeECCCCCCHHHHHHHHHHhCCCC---CcEEEeCH---HHHHHHHHHHHhcCCc-cccEEecCCCCChHH---HHHHHHH
Confidence 477888888999999998765433 44444332 2234444433444311 235665544333322 2222222
Q ss_pred hc-cC--C-CcEEEEEcCCCccChH--HHHHHHHHH
Q 010062 169 NM-HK--D-SKYVLFLDDDVRLHPG--TIGALTTEM 198 (519)
Q Consensus 169 ~a-~~--~-gd~vv~lDaD~~~~pd--~L~~lv~~l 198 (519)
.+ +. + .+.++++=||..+.+. +.+.+.+.+
T Consensus 101 ~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~ 136 (478)
T PRK15460 101 AAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAM 136 (478)
T ss_pred HHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHH
Confidence 22 11 1 3699999999987653 444444443
No 203
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.94 E-value=2.3e+02 Score=25.81 Aligned_cols=102 Identities=9% Similarity=0.008 Sum_probs=54.2
Q ss_pred CchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCCC
Q 010062 95 FGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKDS 174 (519)
Q Consensus 95 e~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~g 174 (519)
..+.+.+.++.....+++ |++..++++...+..+.+.++|| +++++-.....-...-...+...+..+ +-
T Consensus 33 g~dl~~~l~~~~~~~~~~-----ifllG~~~~~~~~~~~~l~~~yP---~l~ivg~~~g~f~~~~~~~i~~~I~~~--~p 102 (172)
T PF03808_consen 33 GSDLFPDLLRRAEQRGKR-----IFLLGGSEEVLEKAAANLRRRYP---GLRIVGYHHGYFDEEEEEAIINRINAS--GP 102 (172)
T ss_pred HHHHHHHHHHHHHHcCCe-----EEEEeCCHHHHHHHHHHHHHHCC---CeEEEEecCCCCChhhHHHHHHHHHHc--CC
Confidence 334556666644444343 45566666555677788899999 456653222111112344555666666 34
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 010062 175 KYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTG 209 (519)
Q Consensus 175 d~vv~lDaD~~~~pd~L~~lv~~l~~dp~vg~V~g 209 (519)
|+|++-- .+--..-|+.+..+.+. ..+.+..|
T Consensus 103 div~vgl-G~PkQE~~~~~~~~~l~--~~v~i~vG 134 (172)
T PF03808_consen 103 DIVFVGL-GAPKQERWIARHRQRLP--AGVIIGVG 134 (172)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCC--CCEEEEEC
Confidence 6655432 22223457777766664 33444444
No 204
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=36.73 E-value=5e+02 Score=27.60 Aligned_cols=118 Identities=22% Similarity=0.204 Sum_probs=66.5
Q ss_pred CCCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHH
Q 010062 82 KLPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIH 161 (519)
Q Consensus 82 ~~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~ 161 (519)
.+|+| +=|+.+. +-+...+++.....- -++++|.....|. +++...+.+ ++.++...+..| -.+
T Consensus 19 ~lPKV--LH~vaGk-pMl~hVi~~a~~l~~---~~i~vVvGh~ae~----V~~~~~~~~---~v~~v~Q~eqlG---TgH 82 (460)
T COG1207 19 DLPKV--LHPVAGK-PMLEHVIDAARALGP---DDIVVVVGHGAEQ----VREALAERD---DVEFVLQEEQLG---TGH 82 (460)
T ss_pred CCccc--chhccCc-cHHHHHHHHHhhcCc---ceEEEEEcCCHHH----HHHHhcccc---CceEEEecccCC---hHH
Confidence 45653 4455544 457777777766543 2555666655433 233222222 367777666554 457
Q ss_pred HHHHHHHhccCCCc-EEEEEcCCC-ccChHHHHHHHHHHHhC-CCeEEEEeccccCCC
Q 010062 162 NQLVGVENMHKDSK-YVLFLDDDV-RLHPGTIGALTTEMEKN-PEIFIQTGYPLDLPS 216 (519)
Q Consensus 162 nl~~gl~~a~~~gd-~vv~lDaD~-~~~pd~L~~lv~~l~~d-p~vg~V~g~~~~~~~ 216 (519)
|..++..+....++ .++++-.|+ .+.++.|++|++.-... .++.+.+. ....|.
T Consensus 83 AV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~-~~~dP~ 139 (460)
T COG1207 83 AVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA-ELDDPT 139 (460)
T ss_pred HHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEE-EcCCCC
Confidence 77777776521233 566777777 47899999888877532 33334443 444443
No 205
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=36.52 E-value=4.7e+02 Score=26.56 Aligned_cols=99 Identities=11% Similarity=0.123 Sum_probs=54.6
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCC-CCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKD-DVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~-~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
++|+-|. +.+...|+++.+..- -+++++...... +.+++...+... ..++.++..... .|-..++..+.
T Consensus 24 l~pv~g~-pli~~~l~~l~~~gi---~~i~vv~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~---~G~~~al~~a~ 93 (353)
T TIGR01208 24 LIPVANK-PILQYAIEDLAEAGI---TDIGIVVGPVTG---EEIKEIVGEGERFGAKITYIVQGEP---LGLAHAVYTAR 93 (353)
T ss_pred ccEECCE-eHHHHHHHHHHHCCC---CEEEEEeCCCCH---HHHHHHHhcccccCceEEEEECCCC---CCHHHHHHHHH
Confidence 3455565 889999999987632 266666554221 223333322111 113444433322 33566777777
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
+... +.++ +++.+|...+. -+.++++.+++
T Consensus 94 ~~l~-~~~~-li~~gD~~~~~-~l~~l~~~~~~ 123 (353)
T TIGR01208 94 DFLG-DDDF-VVYLGDNLIQD-GISRFVKSFEE 123 (353)
T ss_pred HhcC-CCCE-EEEECCeecCc-cHHHHHHHHHh
Confidence 7663 2354 46678987764 56777776653
No 206
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=36.00 E-value=4.1e+02 Score=27.40 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=64.5
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhh-cCCCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQE-FKDDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~-~~~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
++|+- ..+.+...|+++.++..- |++++..--. +.+++.... .....+++++....+.|. ++++..+.
T Consensus 26 llpI~-gkPii~~~l~~L~~~Gv~---eivi~~~y~~----~~i~~~~~d~~~~~~~I~y~~e~~~lGT---ag~l~~a~ 94 (358)
T COG1208 26 LLPIA-GKPLIEYVLEALAAAGVE---EIVLVVGYLG----EQIEEYFGDGEGLGVRITYVVEKEPLGT---AGALKNAL 94 (358)
T ss_pred cceeC-CccHHHHHHHHHHHCCCc---EEEEEeccch----HHHHHHHhcccccCCceEEEecCCcCcc---HHHHHHHH
Confidence 34555 446899999999886543 6666643333 233333333 111136777776665554 45666677
Q ss_pred HhccCCCcEEEEEcCCCccChHHHHHHHHHHHhC
Q 010062 168 ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKN 201 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~d 201 (519)
+.. .+|-++++..|...+-| +.++++..+++
T Consensus 95 ~~l--~~~~f~v~~GDv~~~~d-l~~l~~~~~~~ 125 (358)
T COG1208 95 DLL--GGDDFLVLNGDVLTDLD-LSELLEFHKKK 125 (358)
T ss_pred Hhc--CCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence 776 33778899999999999 99999988764
No 207
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=34.97 E-value=4.1e+02 Score=25.69 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=64.6
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGV 167 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl 167 (519)
++.|.-+ ++.|..+|+.+....+- + ++ |+-.|++++-..+++.+.++ .+.++...... . ..-...++
T Consensus 21 vLlpL~~-~pmI~~~lervrks~~~-d-~i--vvATS~~~~d~~l~~~~~~~----G~~vfrGs~~d-V---L~Rf~~a~ 87 (241)
T COG1861 21 VLLPLGG-EPMIEYQLERVRKSKDL-D-KI--VVATSDKEEDDALEEVCRSH----GFYVFRGSEED-V---LQRFIIAI 87 (241)
T ss_pred hhhhcCC-CchHHHHHHHHhccccc-c-ce--EEEecCCcchhHHHHHHHHc----CeeEecCCHHH-H---HHHHHHHH
Confidence 4455544 45789999999887664 2 33 23444555555677777664 35555432211 0 01111234
Q ss_pred HhccCCCcEEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEe
Q 010062 168 ENMHKDSKYVLFLDDDVR-LHPGTIGALTTEMEKNPEIFIQTG 209 (519)
Q Consensus 168 ~~a~~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~dp~vg~V~g 209 (519)
++. +++.|+.+-.|+- ++|+.+..++....+ .+.+-++.
T Consensus 88 ~a~--~~~~VVRvTGD~P~~dp~l~d~~v~~~l~-~gaDY~s~ 127 (241)
T COG1861 88 KAY--SADVVVRVTGDNPFLDPELVDAAVDRHLE-KGADYVSN 127 (241)
T ss_pred Hhc--CCCeEEEeeCCCCCCCHHHHHHHHHHHHh-cCCccccc
Confidence 443 5789999999996 799999998886654 45566664
No 208
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=33.97 E-value=5e+02 Score=27.77 Aligned_cols=108 Identities=13% Similarity=0.048 Sum_probs=65.6
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchh--HH-
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQK--IH- 161 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K--~~- 161 (519)
.+..+.-+|..-+.+++.|+++-. |.+.=.|.||..|+++-...++++...+| +|.+.........+|. ..
T Consensus 104 ~~a~~~~v~kd~~~verll~aiYh---PqN~ycihvD~~s~~~fk~~~~~L~~cf~---NV~v~~k~~~v~~~G~s~l~a 177 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVERLLQAIYH---PQNVYCIHVDAKSPPEFRVAMQQLASCFP---NVIVLPKRESVTYGGHSILAA 177 (439)
T ss_pred ceEEEEeecccHHHHHHHHHHHhC---CcCcceEEECCCCCHHHHHHHHHHHhcCC---ceEEeccccceecCCchhhHH
Confidence 578888899998888888877753 43455577888888887778888988888 6777753332222111 11
Q ss_pred --HHHHHHHhccCCCcEEEEE-cCCCcc-ChHHHHHHHHHH
Q 010062 162 --NQLVGVENMHKDSKYVLFL-DDDVRL-HPGTIGALTTEM 198 (519)
Q Consensus 162 --nl~~gl~~a~~~gd~vv~l-DaD~~~-~pd~L~~lv~~l 198 (519)
++..-+-+...+-||++-+ ..|..+ ..+-|.++.+.+
T Consensus 178 ~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L 218 (439)
T KOG0799|consen 178 HLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL 218 (439)
T ss_pred HHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc
Confidence 2222222222235666655 455543 445566666665
No 209
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=33.74 E-value=2.1e+02 Score=25.85 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=43.9
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcC
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAG 151 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~ 151 (519)
+|.||+=....-+..++..+-+-+-.+| ||+-+|..+.| .+.+.+++++...+ .+++++.+
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~--ye~~VvSAHRT---Pe~m~~ya~~a~~~-g~~viIAg 64 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVP--YEVRVVSAHRT---PEKMFEYAEEAEER-GVKVIIAG 64 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCC--eEEEEEeccCC---HHHHHHHHHHHHHC-CCeEEEec
Confidence 7899998888888888888888777776 89988876655 34455555444333 78888864
No 210
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=33.46 E-value=3e+02 Score=28.90 Aligned_cols=105 Identities=10% Similarity=0.045 Sum_probs=57.6
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCC-CCceEEEEc-C--CC---CCcchhHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKD-DVDAKVVVA-G--LS---TTCSQKIH 161 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~-~~~v~vv~~-~--~~---~~~~~K~~ 161 (519)
++|+-|..+.|...|+++.+.... |++++.....+. +.+.+...+.. ...+.++.. + .. ....|-.+
T Consensus 30 llPv~gk~plI~~~L~~l~~~Gi~---~i~iv~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGta~ 103 (407)
T PRK00844 30 AVPFGGSYRLIDFVLSNLVNSGYL---RIYVLTQYKSHS---LDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYLGSAD 103 (407)
T ss_pred ceeeCCcceEhHHHHHHHHHCCCC---EEEEEeccCHHH---HHHHHHhCcCccccCCCeEEECCcccCCCCCcccCCHH
Confidence 677777768899999999886543 777776654433 22223222210 001222321 1 10 01123455
Q ss_pred HHHHHHHhccC-CCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 162 NQLVGVENMHK-DSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 162 nl~~gl~~a~~-~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
++..+.+.... ..|+++++.+|+..+.+ +.++++..++
T Consensus 104 al~~a~~~i~~~~~~~~lv~~gD~v~~~d-l~~l~~~h~~ 142 (407)
T PRK00844 104 AIYQSLNLIEDEDPDYVVVFGADHVYRMD-PRQMVDFHIE 142 (407)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCEEEcCC-HHHHHHHHHh
Confidence 66666555422 23788999999977654 5666665543
No 211
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=32.01 E-value=4e+02 Score=24.51 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=55.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhcCCCCceEEEE--cCCCCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHH
Q 010062 117 FLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVV--AGLSTTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGAL 194 (519)
Q Consensus 117 iIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~--~~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~l 194 (519)
+|+|-|+.. -+...+|..+.+.. .|.+. .+.+...+| ..+...+..|.+ -.+++++|+--....+.=++.
T Consensus 2 VIlvTDGD~-~A~ravE~aa~~iG----gRCIS~S~GNPT~lsG--~elV~lIk~a~~-DPV~VMfDD~G~~g~G~GE~A 73 (180)
T PF14097_consen 2 VILVTDGDE-YAKRAVEIAAKNIG----GRCISQSAGNPTPLSG--EELVELIKQAPH-DPVLVMFDDKGFIGEGPGEQA 73 (180)
T ss_pred EEEEECChH-HHHHHHHHHHHHhC----cEEEeccCCCCCcCCH--HHHHHHHHhCCC-CCEEEEEeCCCCCCCCccHHH
Confidence 566655533 44555666666543 45554 333333333 356778888853 578899998888877777777
Q ss_pred HHHHHhCCCeEEEEe
Q 010062 195 TTEMEKNPEIFIQTG 209 (519)
Q Consensus 195 v~~l~~dp~vg~V~g 209 (519)
+....++|++.+.+.
T Consensus 74 l~~v~~h~~IeVLG~ 88 (180)
T PF14097_consen 74 LEYVANHPDIEVLGA 88 (180)
T ss_pred HHHHHcCCCceEEEE
Confidence 777777899888765
No 212
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=31.87 E-value=3.7e+02 Score=25.12 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=42.1
Q ss_pred ceEEEEcCCCCCcchhHHHHHHHHHhccCCCcEEEEEcCCCc-cChHHHHHHHHHHHhCC
Q 010062 144 DAKVVVAGLSTTCSQKIHNQLVGVENMHKDSKYVLFLDDDVR-LHPGTIGALTTEMEKNP 202 (519)
Q Consensus 144 ~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~dp 202 (519)
.++++....+.. |=...+..|+++. .+|+++++=.|+- ++++.+..+.+.+.+++
T Consensus 61 g~~vv~D~~~~~--GPL~Gi~~al~~~--~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 GLPVVPDELPGF--GPLAGILAALRHF--GTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CCceeecCCCCC--CCHHHHHHHHHhC--CCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 466776554432 3456778899988 5899999999996 68899999999987544
No 213
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=31.63 E-value=3.9e+02 Score=24.09 Aligned_cols=86 Identities=9% Similarity=0.009 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhc-cCCC
Q 010062 96 GEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENM-HKDS 174 (519)
Q Consensus 96 ~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a-~~~g 174 (519)
.+.++.+++.+..+ . -+++++.... ++ ++.. .++++... ..+. |-..++..|++.+ ..+.
T Consensus 15 ~~ll~~~~~~l~~~-~---~~iivv~~~~-~~-----------~~~~-~~~~i~d~-~~g~-gpl~~~~~gl~~~~~~~~ 75 (178)
T PRK00576 15 TTLVEHVVGIVGQR-C---APVFVMAAPG-QP-----------LPEL-PAPVLRDE-LRGL-GPLPATGRGLRAAAEAGA 75 (178)
T ss_pred cCHHHHHHHHHhhc-C---CEEEEECCCC-cc-----------cccC-CCCEeccC-CCCC-CcHHHHHHHHHHHHhcCC
Confidence 56788888865532 2 2565555432 21 1111 34555432 2232 2233344455543 2246
Q ss_pred cEEEEEcCCCc-cChHHHHHHHHHHHh
Q 010062 175 KYVLFLDDDVR-LHPGTIGALTTEMEK 200 (519)
Q Consensus 175 d~vv~lDaD~~-~~pd~L~~lv~~l~~ 200 (519)
|+++++=+|.- ++++.++++++...+
T Consensus 76 ~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 76 RLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 89999999996 699999999988754
No 214
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=31.61 E-value=3.8e+02 Score=27.19 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=26.5
Q ss_pred HHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 164 LVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 164 ~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
|.|...+ ++++++++|.|..+.++.-+.+.+...
T Consensus 120 NvAr~~a--~T~~v~~~DvD~~ps~~l~~~l~~~~~ 153 (317)
T PF13896_consen 120 NVARSGA--RTDYVFLLDVDFLPSPGLYEKLLRFAR 153 (317)
T ss_pred HHHHHhc--CcceEEEecceeeeCcchHHHHHHHhh
Confidence 4567777 789999999999999987666655543
No 215
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=31.50 E-value=4.9e+02 Score=25.24 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=35.4
Q ss_pred HHHHHHhc-cCCCcEEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEe
Q 010062 163 QLVGVENM-HKDSKYVLFLDDDVR-LHPGTIGALTTEMEKNPEIFIQTG 209 (519)
Q Consensus 163 l~~gl~~a-~~~gd~vv~lDaD~~-~~pd~L~~lv~~l~~dp~vg~V~g 209 (519)
+..+++.. -++.++|+-+-.|-- ++|.-+.++.+.+++ .++++++.
T Consensus 80 ~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~-~~~~~aTl 127 (247)
T COG1212 80 LAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLEN-SNADMATL 127 (247)
T ss_pred HHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHh-CCcceeee
Confidence 34455554 235689999999985 799999999999986 58888885
No 216
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=30.34 E-value=2.6e+02 Score=28.60 Aligned_cols=105 Identities=11% Similarity=0.039 Sum_probs=56.5
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCC----CceEEEEcC----CCCCcchhH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDD----VDAKVVVAG----LSTTCSQKI 160 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~----~~v~vv~~~----~~~~~~~K~ 160 (519)
++|+-|..+.+...|+++.+..- -|++++.....+.- .+.+.+.+... ..++++... .+....|-.
T Consensus 23 llpv~g~~pli~~~l~~l~~~gi---~~i~iv~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~ 96 (361)
T TIGR02091 23 AVPFGGKYRIIDFPLSNCINSGI---RRIGVLTQYKSHSL---NRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGTA 96 (361)
T ss_pred cceecceeeEeeehhhhhhhcCC---ceEEEEeccChHHH---HHHHHhccCccCccCCCEEEeCCcccCCCCccccCcH
Confidence 55666654678888888877643 36766666544432 22232222110 023433211 111112345
Q ss_pred HHHHHHHHhccC-CCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 161 HNQLVGVENMHK-DSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 161 ~nl~~gl~~a~~-~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
+++..++..... +.|.++++.+|...+.+ +.++++.+.+
T Consensus 97 ~al~~a~~~~~~~~~~~~lv~~gD~l~~~~-l~~~l~~~~~ 136 (361)
T TIGR02091 97 DAVYQNLDLIEDYDPEYVLILSGDHIYKMD-YEKMLDYHIE 136 (361)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCEEEcCC-HHHHHHHHHH
Confidence 666666666521 24778899999987666 5666665543
No 217
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=30.23 E-value=3.3e+02 Score=28.27 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCccChHHHHHHHH
Q 010062 173 DSKYVLFLDDDVRLHPGTIGALTT 196 (519)
Q Consensus 173 ~gd~vv~lDaD~~~~pd~L~~lv~ 196 (519)
.+|++++.|.|.++.|+.|..+-.
T Consensus 178 ~dDliivSDvDEIP~p~~l~~Lr~ 201 (356)
T PF04724_consen 178 DDDLIIVSDVDEIPSPETLKFLRW 201 (356)
T ss_pred CCCEEEEcCcccccCHHHHHHHHh
Confidence 589999999999999999988743
No 218
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.91 E-value=4.6e+02 Score=23.80 Aligned_cols=94 Identities=7% Similarity=-0.062 Sum_probs=46.6
Q ss_pred cCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEc-CCCCCcchhHHHHHHHHHhcc
Q 010062 93 KGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVA-GLSTTCSQKIHNQLVGVENMH 171 (519)
Q Consensus 93 ~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~-~~~~~~~~K~~nl~~gl~~a~ 171 (519)
.+..+.+.+.++..-...+ .+ ++.-++.+...+..+.+.++||+ ++++-. ....+. ....++...+..+
T Consensus 29 ~~g~dl~~~ll~~~~~~~~----~v-~llG~~~~~~~~~~~~l~~~yp~---l~i~g~~~g~~~~-~~~~~i~~~I~~~- 98 (171)
T cd06533 29 VTGSDLMPALLELAAQKGL----RV-FLLGAKPEVLEKAAERLRARYPG---LKIVGYHHGYFGP-EEEEEIIERINAS- 98 (171)
T ss_pred cCcHHHHHHHHHHHHHcCC----eE-EEECCCHHHHHHHHHHHHHHCCC---cEEEEecCCCCCh-hhHHHHHHHHHHc-
Confidence 3444556666666555444 33 45555555555566778888984 565542 111111 1112244555555
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHH
Q 010062 172 KDSKYVLFLDDDVRLHPGTIGALTTEM 198 (519)
Q Consensus 172 ~~gd~vv~lDaD~~~~pd~L~~lv~~l 198 (519)
.-|+|++- =-+--...|+.+..+.+
T Consensus 99 -~pdiv~vg-lG~PkQE~~~~~~~~~l 123 (171)
T cd06533 99 -GADILFVG-LGAPKQELWIARHKDRL 123 (171)
T ss_pred -CCCEEEEE-CCCCHHHHHHHHHHHHC
Confidence 33555442 22222334666665555
No 219
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=26.45 E-value=4.5e+02 Score=24.30 Aligned_cols=80 Identities=11% Similarity=0.194 Sum_probs=48.1
Q ss_pred CC-chHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccC
Q 010062 94 GF-GEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHK 172 (519)
Q Consensus 94 ne-~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~ 172 (519)
+. .+.++..++.+..+ .+ ++++|.++ +. . +. .++++..... +..+-..++..++...
T Consensus 32 ~g~~~ll~~~i~~l~~~-~~---~vvvv~~~--~~-~--------~~----~~~~v~d~~~-~~~gpl~gi~~~l~~~-- 89 (196)
T PRK00560 32 GSYSSLLEYQYTRLLKL-FK---KVYISTKD--KK-F--------EF----NAPFLLEKES-DLFSPLFGIINAFLTL-- 89 (196)
T ss_pred CCCCcHHHHHHHHHHHh-CC---EEEEEECc--hh-c--------cc----CCcEEecCCC-CCCCcHHHHHHHHHhc--
Confidence 45 77888888888754 32 55555543 11 1 01 2344443222 2223344555666655
Q ss_pred CCcEEEEEcCCCc-cChHHHHHHH
Q 010062 173 DSKYVLFLDDDVR-LHPGTIGALT 195 (519)
Q Consensus 173 ~gd~vv~lDaD~~-~~pd~L~~lv 195 (519)
+.|.++++=+|.- ++++.++++.
T Consensus 90 ~~~~vlv~~~D~P~i~~~~i~~l~ 113 (196)
T PRK00560 90 QTPEIFFISVDTPFVSFESIKKLC 113 (196)
T ss_pred CCCeEEEEecCcCcCCHHHHHHHH
Confidence 5689999999995 5999999984
No 220
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=25.71 E-value=1.6e+02 Score=33.44 Aligned_cols=88 Identities=16% Similarity=0.254 Sum_probs=50.4
Q ss_pred HHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcC-CCCceEEEEcCCCCCcchhHHHHHHHHHhccCCCcEEEEEc
Q 010062 103 WRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFK-DDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKDSKYVLFLD 181 (519)
Q Consensus 103 L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~-~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lD 181 (519)
++++.++.-| .-=+|++.....||+.+ +++++++.. ...+++.+.-+... .. .....++.|..+|.+|++-
T Consensus 106 l~~~~~~s~~-~~Pil~~~s~g~Dp~~~-i~~lA~~~~~~~~~~~~islG~~~----~~-~a~~~l~~a~~~G~Wv~L~- 177 (707)
T PF03028_consen 106 LESIYEESSP-TTPILFILSPGSDPSSE-IEQLAKKKGFGNKKLQSISLGSGQ----GP-EAEKALKEAAKEGHWVLLQ- 177 (707)
T ss_dssp HHHHHHCTTT-TC-EEEEE-TT--THHH-HHHHHHCTT-----EEEEETTSHH----HH-HHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHhcCC-CCceEEEeCCCCChHHH-HHHHHHHHhhhhhheeecCCCCch----HH-HHHHHHHHHhcCCeEEEcc-
Confidence 5555554444 45567778888899876 566777654 10156666654332 22 2234555554478999998
Q ss_pred CCCccChHHHHHHHHHHH
Q 010062 182 DDVRLHPGTIGALTTEME 199 (519)
Q Consensus 182 aD~~~~pd~L~~lv~~l~ 199 (519)
++.+.+.||..+.+.++
T Consensus 178 -N~HL~~~wl~~Le~~l~ 194 (707)
T PF03028_consen 178 -NCHLAPSWLPQLEKKLE 194 (707)
T ss_dssp -TGGGGCCCHHCHHHHHH
T ss_pred -cchhHHHHHHHHHHHHh
Confidence 55566788888777764
No 221
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=25.11 E-value=8.2e+02 Score=25.75 Aligned_cols=109 Identities=9% Similarity=0.049 Sum_probs=59.4
Q ss_pred CCcEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCC---C--CceEEEEcCC----C
Q 010062 83 LPRVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKD---D--VDAKVVVAGL----S 153 (519)
Q Consensus 83 ~P~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~---~--~~v~vv~~~~----~ 153 (519)
.|+. ++|+-|..+.|...|+++.+.... |++++.....+. +.+.+.+.+.. . ..+.++.... .
T Consensus 36 ~PK~--llpv~gkp~lI~~~l~~l~~~Gi~---~i~vv~~~~~~~---i~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~e 107 (425)
T PRK00725 36 RAKP--AVYFGGKFRIIDFALSNCINSGIR---RIGVLTQYKAHS---LIRHIQRGWSFFREELGEFVDLLPAQQRVDEE 107 (425)
T ss_pred Ccce--eEEECCEEEEhHHHHHHHHHCCCC---eEEEEecCCHHH---HHHHHHhhhcccccCCCCeEEEeCCcccCCCC
Confidence 4544 678877766888999998876443 677776654432 22222221110 0 0122221111 1
Q ss_pred CCcchhHHHHHHHHHhccC-CCcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 154 TTCSQKIHNQLVGVENMHK-DSKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 154 ~~~~~K~~nl~~gl~~a~~-~gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
....|-++++..+...... +.|.++++.+|...+.+ +.++++...+
T Consensus 108 ~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~d-l~~ll~~h~~ 154 (425)
T PRK00725 108 NWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMD-YSRMLADHVE 154 (425)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccC-HHHHHHHHHH
Confidence 1112345666666655421 24789999999976655 7777776654
No 222
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=24.51 E-value=2.5e+02 Score=26.57 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=31.2
Q ss_pred CeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhccCCCcEEEEEcCCCccC
Q 010062 114 PLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENMHKDSKYVLFLDDDVRLH 187 (519)
Q Consensus 114 ~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a~~~gd~vv~lDaD~~~~ 187 (519)
+++++.+|.+-++-..+..+ -| ++..+.... ..+.+-.....++. .+ -.+++++|+|..++
T Consensus 97 ~~kvl~vdIdi~~~~p~a~e-----~p---~i~f~egss---~dpai~eqi~~~~~-~y-~kIfvilDsdHs~~ 157 (237)
T COG3510 97 PFKVLGVDIDIKPLDPAARE-----VP---DILFIEGSS---TDPAIAEQIRRLKN-EY-PKIFVILDSDHSME 157 (237)
T ss_pred CceEEEEecccCcCChhhhc-----CC---CeEEEeCCC---CCHHHHHHHHHHhc-CC-CcEEEEecCCchHH
Confidence 58888887765542222211 23 566665432 12222222222222 22 37999999997654
No 223
>COG1158 Rho Transcription termination factor [Transcription]
Probab=24.46 E-value=5.4e+02 Score=26.64 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=52.1
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEE-EECCCCCcHHHHHHHHHhhcCCCCceEEEEcC--CCCCcchhHH
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLF-VVESKEDPAYHSVLRLLQEFKDDVDAKVVVAG--LSTTCSQKIH 161 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIv-V~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~--~~~~~~~K~~ 161 (519)
+--||-|=+-.-..+.+.+..-...++| +.+++| ..|.-..+ +..+++. ++..|+... .+....-|+.
T Consensus 175 R~LIVAPPkaGKT~lLq~IA~aIt~N~P-e~~LiVLLIDERPEE----VTdmqrs----V~geViaSTFDepp~~HvqVA 245 (422)
T COG1158 175 RGLIVAPPKAGKTTLLQNIANAITTNHP-ECELIVLLIDERPEE----VTDMQRS----VKGEVVASTFDEPPSRHVQVA 245 (422)
T ss_pred eeeEecCCCCCchHHHHHHHHHHhcCCC-ceEEEEEEecCCchH----HHHHHHh----hcceEEeecCCCcchhhHHHH
Confidence 3445556666666888888888889999 666544 34443322 2232222 134555532 2222222332
Q ss_pred H--HHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 162 N--QLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 162 n--l~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
- +..|-+......|+|+.+|+ |.++.++..
T Consensus 246 E~viEkAKRlVE~~kDVVILLDS--------ITRLaRAYN 277 (422)
T COG1158 246 EMVIEKAKRLVEHGKDVVILLDS--------ITRLARAYN 277 (422)
T ss_pred HHHHHHHHHHHHcCCcEEEEehh--------HHHHHHHhc
Confidence 2 22222222335689999987 556666653
No 224
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=24.11 E-value=5.7e+02 Score=23.56 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=50.5
Q ss_pred ccCCch----HHHHHHHHHHhccCCCCeEEEEEE-CCCCC-cHHHHHHHHHhhcCCCCceEEEEc--CCCCCcchhHHHH
Q 010062 92 LKGFGE----HNLLNWRSQVTSLYGGPLEFLFVV-ESKED-PAYHSVLRLLQEFKDDVDAKVVVA--GLSTTCSQKIHNQ 163 (519)
Q Consensus 92 ~~ne~~----~L~~~L~Sl~~q~yp~~~eiIvV~-d~s~D-~t~~i~~~l~~~~~~~~~v~vv~~--~~~~~~~~K~~nl 163 (519)
.+|+.+ .|..+|+..+.+-+...++-+++- .-.-| =+.+++.++.+++|+. ++.++.. +....++......
T Consensus 16 ~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~i-kL~~v~Pf~~q~~~W~~~~q~~ 94 (177)
T PF06908_consen 16 IFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEI-KLALVLPFENQGNNWNEANQER 94 (177)
T ss_dssp --SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT--EEEEEESSB-TTTTS-HHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhhe-EEEEEEcccchhhcCCHHHHHH
Confidence 466663 455555554444443335543332 22233 2457788888899852 4433332 2222344333322
Q ss_pred HHHH-HhccCCCcEEEEEcCCCccChHHHHHHHHHHHhCCC
Q 010062 164 LVGV-ENMHKDSKYVLFLDDDVRLHPGTIGALTTEMEKNPE 203 (519)
Q Consensus 164 ~~gl-~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~~dp~ 203 (519)
-..+ ++| |++..+-.+-...|..+.+=-+.|-++.+
T Consensus 95 y~~il~~a----D~v~~vs~~~Y~~~~~~~~rn~fMvdhsd 131 (177)
T PF06908_consen 95 YQSILEQA----DFVVVVSERPYYSPGQLQKRNRFMVDHSD 131 (177)
T ss_dssp HHHHHHH-----SEEEESSSSB---HHHHHHHHHHHHHHSS
T ss_pred HHHHHHhC----CEEEEccCCCCCCHHHHHHHhHHHHhCCC
Confidence 2333 444 78888877767789999887787765443
No 225
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=23.77 E-value=3.1e+02 Score=28.13 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=53.5
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCC-Cce------EEEEcCC-CCCcchhH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDD-VDA------KVVVAGL-STTCSQKI 160 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~-~~v------~vv~~~~-~~~~~~K~ 160 (519)
++|+-|..+.|+..|+.+.++.-. |++++...-.+ +.+++...+.... .+. ..+..++ ..+.+ ..
T Consensus 27 LlpV~gk~PlIe~~l~~L~~~Gi~---~I~iv~~~~~~---~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~tg-~~ 99 (369)
T TIGR02092 27 SLPFGGRYRLIDFPLSNMVNAGIR---NVFIFFKNKER---QSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEG-GK 99 (369)
T ss_pred ccccCCeeeEEEEEhhhhhccCCC---EEEEEeCCCcH---HHHHHHHhCCCCCCcccccCcEEEEeccCCCCcccC-hH
Confidence 567767657888888888886443 77777765433 1233322211100 011 1122222 21222 23
Q ss_pred HHHHHHHHhcc-CCCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 161 HNQLVGVENMH-KDSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 161 ~nl~~gl~~a~-~~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
.++..+.+... ...|.++++.+|+..+.| |.++++...
T Consensus 100 ~a~~~a~~~l~~~~~~~~lvlnGD~l~~~d-l~~ll~~h~ 138 (369)
T TIGR02092 100 RYFSQNLEFLKRSTSEYTVVLNSHMVCNID-LKAVLKYHE 138 (369)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCEEEecC-HHHHHHHHH
Confidence 44444444431 124788899999977766 555666544
No 226
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=23.11 E-value=9e+02 Score=25.52 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=54.6
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCC-------CCceEEEEcCCC----CCcc
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKD-------DVDAKVVVAGLS----TTCS 157 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~-------~~~v~vv~~~~~----~~~~ 157 (519)
++|+-|..+.+...|+++.+..-. |++++.....+ ++.+.+...+.. ...+++...... ....
T Consensus 28 llpv~g~~plId~~L~~l~~~Gi~---~i~iv~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~l 101 (436)
T PLN02241 28 AVPIGGNYRLIDIPMSNCINSGIN---KIYVLTQFNSA---SLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKGWFQ 101 (436)
T ss_pred ceEeCCcceEehHHHHHHHhCCCC---EEEEEeccCHH---HHHHHHhccCCCCCCcccCCCCEEEcCCcccCCCCcccc
Confidence 677777767888889988876433 66666655332 233333322210 001333221110 0122
Q ss_pred hhHHHHHHHHHhccC-C---CcEEEEEcCCCccChHHHHHHHHHHHh
Q 010062 158 QKIHNQLVGVENMHK-D---SKYVLFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 158 ~K~~nl~~gl~~a~~-~---gd~vv~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
+-.+++..++..... . .+.++++.+|.....| +.++++...+
T Consensus 102 Gt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~d-l~~ll~~h~~ 147 (436)
T PLN02241 102 GTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMD-YMDFVQKHRE 147 (436)
T ss_pred CcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccC-HHHHHHHHHH
Confidence 334555544433321 1 3678899999987766 5555555443
No 227
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=23.09 E-value=3.1e+02 Score=28.07 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=33.2
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhh
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQE 138 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~ 138 (519)
++-+++-++|..+.++-+++|+.+..--. |.++|. |.|.-.+.+.++.+.
T Consensus 118 ~~vlV~qVHnRp~Ylr~lveSlrk~kGI~--~tLlif--SHD~~~~eiN~~I~~ 167 (455)
T KOG2791|consen 118 RVVLVLQVHNRPQYLRVLVESLRKVKGIS--ETLLIF--SHDGYFEEINRIIES 167 (455)
T ss_pred eEEEEEEEcCcHHHHHHHHHHHHhccCcc--ceEEEE--eccchHHHHHHHHhh
Confidence 57777889999999999999998754331 333332 344445556665543
No 228
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=22.96 E-value=5.9e+02 Score=23.29 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=17.2
Q ss_pred HHHHHHHHHhccCCCcEEEEEcCCCccChHHHHHHHHHHH
Q 010062 160 IHNQLVGVENMHKDSKYVLFLDDDVRLHPGTIGALTTEME 199 (519)
Q Consensus 160 ~~nl~~gl~~a~~~gd~vv~lDaD~~~~pd~L~~lv~~l~ 199 (519)
...|..-.+.. .|.|....|+ +-|.++...+.
T Consensus 148 ~~~L~~ia~~t--gG~~~~~~~~------~~l~~~~~~~~ 179 (183)
T cd01453 148 MHICKEICKAT--NGTYKVILDE------THLKELLLEHV 179 (183)
T ss_pred HHHHHHHHHHh--CCeeEeeCCH------HHHHHHHHhcC
Confidence 34454444444 5788877654 44555555544
No 229
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=22.14 E-value=5e+02 Score=22.13 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=47.9
Q ss_pred EEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHh---hcCCCCceEEEEcCCCCCcchhHHHHH
Q 010062 88 VVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQ---EFKDDVDAKVVVAGLSTTCSQKIHNQL 164 (519)
Q Consensus 88 VIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~---~~~~~~~v~vv~~~~~~~~~~K~~nl~ 164 (519)
.+|-+-+..+......+.+....- ++|++-.+|+.+.+..+....... ...+. . ......||.-.-.++.
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~~~--~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~~-~----l~~gEiGC~lSH~~~w 75 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAALGL--DFEFFDAVDGKDLSEEELAALYDALFLPRYGR-P----LTPGEIGCFLSHYKLW 75 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCC--CeEEEeccccccCCHHHHHHHhHHHhhhhcCC-C----CChhhHHHHHHHHHHH
Confidence 345555666655555554444432 689988888877665443322211 11100 0 0111223432222222
Q ss_pred HHHHhccCCCcEEEEEcCCCccChH
Q 010062 165 VGVENMHKDSKYVLFLDDDVRLHPG 189 (519)
Q Consensus 165 ~gl~~a~~~gd~vv~lDaD~~~~pd 189 (519)
+-+... +.++.+++.+|+.+.++
T Consensus 76 ~~~~~~--~~~~alIlEDDv~~~~~ 98 (128)
T cd06532 76 QKIVES--NLEYALILEDDAILDPD 98 (128)
T ss_pred HHHHHc--CCCeEEEEccCcEECCC
Confidence 222222 34999999999999998
No 230
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=22.04 E-value=1.3e+02 Score=28.78 Aligned_cols=55 Identities=13% Similarity=0.022 Sum_probs=38.9
Q ss_pred EEEEeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEc
Q 010062 86 VTVVMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVA 150 (519)
Q Consensus 86 VSVIIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~ 150 (519)
=.|||+-+||+. |.+ .. +..| ++.-.++|-.+.|.-.+.++.+..+||+ +.++.+
T Consensus 30 N~VIi~gR~e~~-L~e----~~-~~~p-~~~t~v~Dv~d~~~~~~lvewLkk~~P~---lNvliN 84 (245)
T COG3967 30 NTVIICGRNEER-LAE----AK-AENP-EIHTEVCDVADRDSRRELVEWLKKEYPN---LNVLIN 84 (245)
T ss_pred CEEEEecCcHHH-HHH----HH-hcCc-chheeeecccchhhHHHHHHHHHhhCCc---hheeee
Confidence 479999999863 333 22 3355 5555677777778878999999999994 566654
No 231
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=21.92 E-value=5.6e+02 Score=25.53 Aligned_cols=95 Identities=11% Similarity=0.048 Sum_probs=49.5
Q ss_pred HHHHHhccCCCCeE-EEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHHhc----cCCCcEE
Q 010062 103 WRSQVTSLYGGPLE-FLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVENM----HKDSKYV 177 (519)
Q Consensus 103 L~Sl~~q~yp~~~e-iIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~~a----~~~gd~v 177 (519)
++.+.+|..+ +.- |+...+...++..+..+++...-... +..++.+..+....-+..+-..|+..| ....|++
T Consensus 87 l~~i~~~~~~-~v~~V~~~iGer~~ev~e~~~~~~~~~~~~-~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vl 164 (274)
T cd01132 87 IDTIINQKGK-KVYCIYVAIGQKASTVAQVVKTLEEHGAME-YTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHAL 164 (274)
T ss_pred HHHHHHhcCC-CeEEEEEecccchHHHHHHHHHHHhcCccc-eeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 4667777665 555 44445566666667777776543221 444555433332222222222233333 1135888
Q ss_pred EEEcCCCccChHHHHHHHHHHHh
Q 010062 178 LFLDDDVRLHPGTIGALTTEMEK 200 (519)
Q Consensus 178 v~lDaD~~~~pd~L~~lv~~l~~ 200 (519)
+++|+=+++ .+.++++-..+.+
T Consensus 165 vl~DslTr~-A~A~rEisl~~ge 186 (274)
T cd01132 165 IIYDDLSKQ-AVAYRQMSLLLRR 186 (274)
T ss_pred EEEcChHHH-HHHHHHHHHhcCC
Confidence 888854443 4566666666554
No 232
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=21.69 E-value=3.9e+02 Score=28.43 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=38.2
Q ss_pred ccCCchHHHHHHHHHHhccCCCCeEEEEEECCCC-----CcHHHHHHHHHhhcCCCCceEEEEc
Q 010062 92 LKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKE-----DPAYHSVLRLLQEFKDDVDAKVVVA 150 (519)
Q Consensus 92 ~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~-----D~t~~i~~~l~~~~~~~~~v~vv~~ 150 (519)
+++.++.|.+.|+.+.+.--| ++|+|..... |+-..+++++.+++|+...+.++.-
T Consensus 72 VfGg~~~L~~~I~~~~~~~~P---~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~~~~~pvi~v 132 (432)
T TIGR01285 72 ILGGDEHIEEAIDTLCQRNKP---KAIGLLSTGLTETRGEDIARVVRQFREKHPQHKGTAVVTV 132 (432)
T ss_pred EECcHHHHHHHHHHHHHhcCC---CEEEEeCCCcccccccCHHHHHHHHHhhcccccCCeEEEe
Confidence 577888999999999875445 6667766543 5556778888777664224555553
No 233
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=21.68 E-value=8.1e+02 Score=24.44 Aligned_cols=119 Identities=12% Similarity=0.033 Sum_probs=55.0
Q ss_pred cEEEEeeccCCchHHHHHHHHHHhcc-------CC-CCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCc
Q 010062 85 RVTVVMPLKGFGEHNLLNWRSQVTSL-------YG-GPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTC 156 (519)
Q Consensus 85 ~VSVIIP~~ne~~~L~~~L~Sl~~q~-------yp-~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~ 156 (519)
.+.+-.|.--....+++.++.+.+.- ++ ....+.+...++.-.-.++++......-+ ..+..+...++
T Consensus 52 ~~~~~~p~~~~~~~L~~~L~~l~~~l~l~i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~-~~i~~visn~~--- 127 (286)
T PRK13011 52 RVEFHSEEGLDEDALRAGFAPIAARFGMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELP-MDIVGVVSNHP--- 127 (286)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHhCcEEEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCC-cEEEEEEECCc---
Confidence 34555565434567888888876541 12 23566666666544444555544333211 14444444322
Q ss_pred chhHHHHHHHHHhccCCCcEEEEE-cCCCccC-hHHHHHHHHHHHhCCCeEEEEeccccCCC
Q 010062 157 SQKIHNQLVGVENMHKDSKYVLFL-DDDVRLH-PGTIGALTTEMEKNPEIFIQTGYPLDLPS 216 (519)
Q Consensus 157 ~~K~~nl~~gl~~a~~~gd~vv~l-DaD~~~~-pd~L~~lv~~l~~dp~vg~V~g~~~~~~~ 216 (519)
...++ .++. .=++..+- +.+..-+ ...+.+.++.+ +++..++.|+....++
T Consensus 128 --~~~~l---A~~~--gIp~~~~~~~~~~~~~~~~~~~~~l~~~--~~Dlivlagy~~il~~ 180 (286)
T PRK13011 128 --DLEPL---AAWH--GIPFHHFPITPDTKPQQEAQVLDVVEES--GAELVVLARYMQVLSP 180 (286)
T ss_pred --cHHHH---HHHh--CCCEEEeCCCcCchhhhHHHHHHHHHHh--CcCEEEEeChhhhCCH
Confidence 12222 1222 22444432 1122221 12233444443 3788777786655553
No 234
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=21.14 E-value=8.9e+02 Score=25.21 Aligned_cols=92 Identities=9% Similarity=0.053 Sum_probs=49.0
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCCCcHHHHHHHHHhhcCCCCceEEEEcCCCCCcchhHHHHHHHHH
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKEDPAYHSVLRLLQEFKDDVDAKVVVAGLSTTCSQKIHNQLVGVE 168 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~D~t~~i~~~l~~~~~~~~~v~vv~~~~~~~~~~K~~nl~~gl~ 168 (519)
++|+- ..+.+...++.+.+. - -+++++..... .+ +++...+... +++++...... ..+..+++..
T Consensus 24 Llpi~-gkPli~~~i~~l~~~-~---~~i~Ivv~~~~---~~-i~~~~~~~~~--~v~~~~~~~~~-~~gt~~al~~--- 88 (430)
T PRK14359 24 LHTIC-GKPMLFYILKEAFAI-S---DDVHVVLHHQK---ER-IKEAVLEYFP--GVIFHTQDLEN-YPGTGGALMG--- 88 (430)
T ss_pred eCEEC-CccHHHHHHHHHHHc-C---CcEEEEECCCH---HH-HHHHHHhcCC--ceEEEEecCcc-CCCcHHHHhh---
Confidence 44554 467888888888765 2 14445553322 22 3333333211 46666543221 1122334432
Q ss_pred hccCCCcEEEEEcCCC-ccChHHHHHHHH
Q 010062 169 NMHKDSKYVLFLDDDV-RLHPGTIGALTT 196 (519)
Q Consensus 169 ~a~~~gd~vv~lDaD~-~~~pd~L~~lv~ 196 (519)
+....|.++++++|. ...++.++++.+
T Consensus 89 -~~~~~d~vlv~~gD~p~~~~~~l~~l~~ 116 (430)
T PRK14359 89 -IEPKHERVLILNGDMPLVEKDELEKLLE 116 (430)
T ss_pred -cccCCCeEEEEECCccCCCHHHHHHHHh
Confidence 221358899999998 457788877653
No 235
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.39 E-value=4.8e+02 Score=27.59 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=38.6
Q ss_pred ccCCchHHHHHHHHHHhccCCCCeEEEEEECCCC-----CcHHHHHHHHHhhcCCCCceEEEEc
Q 010062 92 LKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKE-----DPAYHSVLRLLQEFKDDVDAKVVVA 150 (519)
Q Consensus 92 ~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~-----D~t~~i~~~l~~~~~~~~~v~vv~~ 150 (519)
+++.++.|.+.|+.+.+.--| ++|+|...+. |+-..+++++.+++|+..++.++..
T Consensus 62 VfGg~~~L~~~i~~~~~~~~p---~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v 122 (417)
T cd01966 62 ILGGGENLEEALDTLAERAKP---KVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYV 122 (417)
T ss_pred EECCHHHHHHHHHHHHHhcCC---CEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEe
Confidence 688999999999999876434 5666666542 4556677887777664224666653
No 236
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=20.19 E-value=8.8e+02 Score=24.26 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=23.5
Q ss_pred EeeccCCchHHHHHHHHHHhccCCCCeEEEEEECCCC
Q 010062 89 VMPLKGFGEHNLLNWRSQVTSLYGGPLEFLFVVESKE 125 (519)
Q Consensus 89 IIP~~ne~~~L~~~L~Sl~~q~yp~~~eiIvV~d~s~ 125 (519)
++|+-|. +.+..+|+++..... -+++++.....
T Consensus 33 l~pv~g~-pii~~~l~~l~~~gi---~~i~vv~~~~~ 65 (302)
T PRK13389 33 MLPLVDK-PLIQYVVNECIAAGI---TEIVLVTHSSK 65 (302)
T ss_pred eeEECCE-EHHHHHHHHHHHCCC---CEEEEEeCCCH
Confidence 5677666 899999999988643 36666666443
Done!