BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010063
(519 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%)
Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
D P + +L + +Y Y+ + + + + E GK + +L +A + G
Sbjct: 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123
Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
G+ K+A + R + I E G + D+ L +L L +GK + E + R L+IY
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370
G +D V +LA G ++A LYK+ L + + S+DD
Sbjct: 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 46/97 (47%)
Query: 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463
EK G +HP T L LA Y + +A LL L I KT+G D +++ + +L
Sbjct: 58 EKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL 117
Query: 464 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGK 500
+ + KEAE L AL IRE GKD V K
Sbjct: 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
I EK GK+HP+ L NLA Y + + EAE L + L+I K +G D ++ +
Sbjct: 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157
Query: 462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKL-----FCFVLFGLVWFCLLL 516
+L + + + +E E AL I + G D V K C++ G L
Sbjct: 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETL 217
Query: 517 YK 518
YK
Sbjct: 218 YK 219
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 79/166 (47%), Gaps = 2/166 (1%)
Query: 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVD-SLKDDEPLLDAILLHMGSMYSTLENYE 220
+L+I+AL Y K +LL+ I + +L D P + A L ++ +Y Y+
Sbjct: 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128
Query: 221 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280
++ + +R + + E GK + L +A + + G+ ++ Y R + I + G
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188
Query: 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-KIYTKVYGEND 325
+ ++ +L S ++K+GK AE+++ IL + + + +G D
Sbjct: 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 86/237 (36%), Gaps = 45/237 (18%)
Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
S GR + AV + + + LE G + D+ L L ++ + K DA ++ + L I
Sbjct: 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98
Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376
K G++ V + +LA G +EA L K+AL
Sbjct: 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE------------------- 139
Query: 377 IDLAELLHIVXXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436
I EK GK+HP L NLA + E E
Sbjct: 140 -------------------------IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174
Query: 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL-YIREIAFG 492
+ L+I +GPDD +++ +L + K+AE L E L E FG
Sbjct: 175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 2/169 (1%)
Query: 212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 271
Y++ YE ++ + ++ + LE G + T L +A V + K A + +
Sbjct: 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA 95
Query: 272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 331
+ I E G + + L +L L+ K GK +AE + R L+I KV G++ V
Sbjct: 96 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155
Query: 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
+ +LA G EE Y++AL + + + DD + + +LA
Sbjct: 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTK--LGPDDPNVAKTKNNLA 202
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467
G E P+ + L NL Y+ + A L + L+ + KT G D ++ + L +
Sbjct: 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY 79
Query: 468 YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLF--CFVLFG 508
N+ K+A L+ +AL IRE GKD V VL+G
Sbjct: 80 RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 122
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 154 AGNKGIEEVAILDIIALGYVYIGDLKFVQSLL-DMMSGIVDSLKDDEPLLDAILLHMGSM 212
+G+ + +L+I+AL Y K LL D ++ +L D P + A L ++ +
Sbjct: 35 SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94
Query: 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272
Y Y+++ + +R + + E GK + L +A + + G+A++ Y R +
Sbjct: 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRAL 154
Query: 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-KIYTKVYGENDG 326
I G + ++ +L S ++K+GK DAE+++ IL + + K +G +G
Sbjct: 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG 209
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%)
Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
D P + +L + +Y Y+++ + + + E GK + +L +A + G
Sbjct: 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97
Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
G+ K+A + R + I E G D+ L +L L +GKA + E + R L+IY
Sbjct: 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368
G +D V +LA G ++A LYK+ L + + S++
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%)
Query: 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463
EK G +HP T L LA Y + EA LL L I KT+G D +++ + +L
Sbjct: 32 EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91
Query: 464 GITLYHLNRDKEAEKLVLEALYIREIAFGK 493
+ + KEAE L AL IRE GK
Sbjct: 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGK 121
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
I EK GK+HP+ L NLA Y + + EAE L + L+I K +G ++ +
Sbjct: 72 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLS 131
Query: 462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKL-----FCFVLFGLVWFCLLL 516
+L + + + +E E AL I G D V K C++ G L
Sbjct: 132 NLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETL 191
Query: 517 YK 518
YK
Sbjct: 192 YK 193
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 227 QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286
++ + LE G + T L +A V + K+A + + + I E G + +
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE 346
L +L L+ K GK +AE + R L+I KV G+ V + +LA G AE
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE 144
Query: 347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
E Y++AL + + + DD + + +LA
Sbjct: 145 EVEYYYRRALEIY--ATRLGPDDPNVAKTKNNLA 176
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 83/239 (34%), Gaps = 48/239 (20%)
Query: 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323
AV + + + LE G + D+ L L ++ + K +A + + L I K G+
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383
+ V + +LA G +EA L K+AL
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE-------------------------- 113
Query: 384 HIVXXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443
I EK GK HP L NLA E E R L+
Sbjct: 114 ------------------IREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALE 155
Query: 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL-YIREIAFGK---DSLPV 498
I +GPDD +++ +L + ++AE L E L E FG D+ P+
Sbjct: 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 154 AGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD-SLKDDEPLLDAILLHMGSM 212
+G+ + +L+I+AL Y K LL+ I + +L D P + A L ++ +
Sbjct: 35 SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94
Query: 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272
Y Y+++ + +R + + E GK + L +A + + G+A++ Y R +
Sbjct: 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154
Query: 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-KIYTKVYGENDG 326
I G + ++ +L S ++K+GK DAE+++ IL + + K +G +G
Sbjct: 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG 209
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%)
Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
D P + +L + +Y Y+++ + + + E GK + +L +A + G
Sbjct: 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97
Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
G+ K+A + R + I E G D+ L +L L +GKA + E + R L+IY
Sbjct: 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368
G +D V +LA G ++A LYK+ L + + S++
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%)
Query: 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463
EK G +HP T L LA Y + EA LL L I KT+G D +++ + +L
Sbjct: 32 EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91
Query: 464 GITLYHLNRDKEAEKLVLEALYIREIAFGK 493
+ + KEAE L AL IRE GK
Sbjct: 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGK 121
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
I EK GK+HP+ L NLA Y + + EAE L + L+I K +G ++ +
Sbjct: 72 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN 131
Query: 462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKL-----FCFVLFGLVWFCLLL 516
+L + + + +E E AL I G D V K C++ G L
Sbjct: 132 NLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETL 191
Query: 517 YK 518
YK
Sbjct: 192 YK 193
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 227 QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286
++ + LE G + T L +A V + K+A + + + I E G + +
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE 346
L +L L+ K GK +AE + R L+I KV G+ V + +LA G AE
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144
Query: 347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
E Y++AL + + + DD + + +LA
Sbjct: 145 EVEYYYRRALEIY--ATRLGPDDPNVAKTKNNLA 176
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 83/239 (34%), Gaps = 48/239 (20%)
Query: 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323
AV + + + LE G + D+ L L ++ + K +A + + L I K G+
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383
+ V + +LA G +EA L K+AL
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE-------------------------- 113
Query: 384 HIVXXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443
I EK GK HP L NLA E E R L+
Sbjct: 114 ------------------IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155
Query: 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL-YIREIAFGK---DSLPV 498
I +GPDD +++ +L + ++AE L E L E FG D+ P+
Sbjct: 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 24/151 (15%)
Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
++G+ Y +Y++++ YQ+ + L+ R + + + G +A+E
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALE-LDPRSAE-------AWYNLGNAYYKQGDYDEAIEY 57
Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327
Y + LEL+ + A ++LG+ + K+G +A + + L++ D R
Sbjct: 58 YQKA---LELDPRSAEA-----WYNLGNAYYKQGDYDEAIEYYQKALEL--------DPR 101
Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
A +L +A G+ +EA+E Y+KAL +
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350
++LG+ + K+G +A + + L++ D R A +L +A G+ +EA+E
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIE 56
Query: 351 LYKKALRV 358
Y+KAL +
Sbjct: 57 YYQKALEL 64
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 77/358 (21%), Positives = 147/358 (41%), Gaps = 56/358 (15%)
Query: 55 CKAIVRFWALKRFASVGSLEVDTEDQK------HHLSSGFSAPNDFARSKTLHDHSSNLW 108
C+A V F+ +++V TED K L + + +D+A++ H H L
Sbjct: 25 CRAGVSFFE-------AAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 77
Query: 109 DGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII 168
+ D + N ++ ++GN ++AI Q + + +E N + E L
Sbjct: 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARAL--Y 131
Query: 169 ALGYVYIGDLK------------FVQSLLDMMSGIVDSLKDDEPLLDAI---------LL 207
LG VY K F + + D + VD +++ L+ A+
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFG 191
Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
++G+ + L N+ +++ +++ + + + K + S LG A + +G + A E
Sbjct: 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--LGEFETASEY 249
Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFI---KEGKAVDAESVFSRILKIYTKVYGEN 324
Y + T+L + + A +SLG+ + KA+D I + GE
Sbjct: 250 YKK--TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE- 306
Query: 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL 382
G A SL +A A GN ++A+ +K L + ++ D S R++L++L
Sbjct: 307 ----GRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG----DKSGELTARLNLSDL 356
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350
++LG+ + K+G +A + + L++ D R A +L +A G+ +EA+E
Sbjct: 7 YNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIE 58
Query: 351 LYKKALRV 358
Y+KAL +
Sbjct: 59 YYQKALEL 66
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.0 bits (71), Expect = 0.80, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318
G +A+E Y + LEL A ++LG+ + K+G +A + + L++Y
Sbjct: 23 GDYDEAIEYYQKA---LELYPNNAEA-----WYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
N+ A +L +A G+ +EA+E Y+KAL +
Sbjct: 75 -----NNAE---AWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350
++LG+ + K+G +A + + L++Y N+ A +L +A G+ +EA+E
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELYP-----NNAE---AWYNLGNAYYKQGDYDEAIE 64
Query: 351 LYKKALRV 358
Y+KAL +
Sbjct: 65 YYQKALEL 72
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318
G +A+E Y + LEL+ A ++LG+ + K+G +A + + L++
Sbjct: 23 GDYDEAIEYYQKA---LELDPNNAEA-----WYNLGNAYYKQGDYDEAIEYYQKALEL-- 72
Query: 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
D A +L +A G+ +EA+E Y+KAL +
Sbjct: 73 ------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350
++LG+ + K+G +A + + L++ D A +L +A G+ +EA+E
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 351 LYKKALRV 358
Y+KAL +
Sbjct: 65 YYQKALEL 72
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 138/337 (40%), Gaps = 52/337 (15%)
Query: 55 CKAIVRFWALKRFASVGSLEVDTEDQK------HHLSSGFSAPNDFARSKTLHDHSSNLW 108
C+A V F+ +++V TED K L + + +D+A++ H H L
Sbjct: 23 CRAGVSFFE-------AAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 75
Query: 109 DGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII 168
+ D + N ++ ++GN ++AI Q + + +E N + E L
Sbjct: 76 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARAL--Y 129
Query: 169 ALGYVYIGDLK------------FVQSLLDMMSGIVDSLKDDEPLLDAI---------LL 207
LG VY K F + + + + VD +++ L+ A+
Sbjct: 130 NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFG 189
Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
++G+ + L N+ +++ +++ + + + K + S LG A + +G + A E
Sbjct: 190 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--LGEFETASEY 247
Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFI---KEGKAVDAESVFSRILKIYTKVYGEN 324
Y + T+L + + A +SLG+ + KA+D I + GE
Sbjct: 248 YKK--TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE- 304
Query: 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361
G A SL +A A GN ++A+ +K L + ++
Sbjct: 305 ----GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 337
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL 351
+L + ++G +AE ++ L++ + + ++ +LA+ K GN EEAV L
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRL-CPTHAD-------SLNNLANIKREQGNIEEAVRL 327
Query: 352 YKKALRVIKD 361
Y+KAL V +
Sbjct: 328 YRKALEVFPE 337
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKD 361
++ +LA+ K GN EEAV LY+KAL V +
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPE 41
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 138/337 (40%), Gaps = 52/337 (15%)
Query: 55 CKAIVRFWALKRFASVGSLEVDTEDQK------HHLSSGFSAPNDFARSKTLHDHSSNLW 108
C+A V F+ +++V TED K L + + +D+A++ H H L
Sbjct: 21 CRAGVSFFE-------AAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73
Query: 109 DGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII 168
+ D + N ++ ++GN ++AI Q + + +E N + E L
Sbjct: 74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARAL--Y 127
Query: 169 ALGYVYIGDLK------------FVQSLLDMMSGIVDSLKDDEPLLDAI---------LL 207
LG VY K F + + + + VD +++ L+ A+
Sbjct: 128 NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFG 187
Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
++G+ + L N+ +++ +++ + + + K + S LG A + +G + A E
Sbjct: 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--LGEFETASEY 245
Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFI---KEGKAVDAESVFSRILKIYTKVYGEN 324
Y + T+L + + A +SLG+ + KA+D I + GE
Sbjct: 246 YKK--TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE- 302
Query: 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361
G A SL +A A GN ++A+ +K L + ++
Sbjct: 303 ----GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335
>pdb|2F9I|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|C Chain C, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 327
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 111 MNDFERQLLELFNEVKSMIMMGNKNDA-----IDLLQANYEAVKEQINAGNKGIEEVAI 164
M DFE+ L E+ N+++S+ +KND ID+L+A+ E ++I K + V I
Sbjct: 14 MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQI 72
>pdb|3U84|A Chain A, Crystal Structure Of Human Menin
pdb|3U84|B Chain B, Crystal Structure Of Human Menin
pdb|3U85|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1
pdb|3U86|A Chain A, Crystal Structure Of Human Menin In Complex With Jund
pdb|3U88|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1 And
Ledgf
pdb|3U88|B Chain B, Crystal Structure Of Human Menin In Complex With Mll1 And
Ledgf
Length = 550
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371
LA C N N EA++ + VI+D NY D+ I
Sbjct: 324 LAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEI 360
>pdb|4GPQ|A Chain A, Structural Insights Into Inhibition Of The Bivalent
Menin-Mll Interaction By Small Molecules In Leukemia
pdb|4GQ3|A Chain A, Human Menin With Bound Inhibitor Mi-2
pdb|4GQ4|A Chain A, Human Menin With Bound Inhibitor Mi-2-2
pdb|4GQ6|A Chain A, Human Menin In Complex With Mll Peptide
Length = 489
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371
LA C N N EA++ + VI+D NY D+ I
Sbjct: 309 LAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEI 345
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350
++LG+ + K+G +A + + L++ D A +L +A G+ +EA+E
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 351 LYKKALRV 358
Y+KAL +
Sbjct: 65 YYQKALEL 72
>pdb|1HQR|D Chain D, Crystal Structure Of A Superantigen Bound To The High-
Affinity, Zinc-Dependent Site On Mhc Class Ii
pdb|1KTK|A Chain A, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
pdb|1KTK|B Chain B, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
pdb|1KTK|C Chain C, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
pdb|1KTK|D Chain D, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
pdb|1AN8|A Chain A, Crystal Structure Of The Streptococcal Superantigen Spe-C
Length = 208
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 39 ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSK 98
+ Q K++ Y++ I + A + S G +E+ T+D KH F +PN+ RS
Sbjct: 127 VTFQEIDFKIRKYLMDNYKI--YDATSPYVS-GRIEIGTKDGKHEQIDLFDSPNEGTRSD 183
Query: 99 TLHDHSSNLWDGMNDF 114
+ N M +F
Sbjct: 184 IFAKYKDNRIINMKNF 199
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239
L G LE YE+++ Y VINV+E Y K
Sbjct: 44 LMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76
>pdb|3ULQ|A Chain A, Crystal Structure Of The Anti-Activator Rapf Complexed
With The Response Regulator Coma Dna Binding Domain
Length = 383
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 244 LVTSLLGMAKVLGSIGRAKKAVEIY--HRVITILELNRGTESADLVLPLFSLGSLFIKEG 301
+ S M + S+ A++A EIY H I L + LF+ L +K+
Sbjct: 149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS--------LFATNFLDLKQ- 199
Query: 302 KAVDAESVFSRILKIYTKVYGENDGRV-GMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
E S K Y+ E ++ G + ++ K + E+A+ +K+A+ V +
Sbjct: 200 ----YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255
Query: 361 DSN 363
+SN
Sbjct: 256 ESN 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,065,699
Number of Sequences: 62578
Number of extensions: 549715
Number of successful extensions: 1392
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1348
Number of HSP's gapped (non-prelim): 62
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)