Query 010063
Match_columns 519
No_of_seqs 1210 out of 2994
Neff 11.5
Searched_HMMs 46136
Date Thu Mar 28 20:36:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840 Kinesin light chain [C 100.0 1.6E-33 3.4E-38 262.1 43.6 311 188-501 184-494 (508)
2 KOG4626 O-linked N-acetylgluco 100.0 7.6E-36 1.6E-40 270.2 23.2 327 121-517 119-472 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 3.9E-36 8.6E-41 272.1 20.5 292 158-516 214-505 (966)
4 KOG1840 Kinesin light chain [C 100.0 1.6E-31 3.5E-36 248.8 41.0 308 155-465 192-500 (508)
5 TIGR00990 3a0801s09 mitochondr 100.0 1.3E-27 2.7E-32 239.9 38.0 338 118-518 127-559 (615)
6 TIGR00990 3a0801s09 mitochondr 100.0 3.6E-26 7.8E-31 229.4 35.2 316 120-488 162-573 (615)
7 PRK15174 Vi polysaccharide exp 99.9 3E-24 6.4E-29 214.6 34.6 323 121-515 79-405 (656)
8 PRK15174 Vi polysaccharide exp 99.9 6.8E-24 1.5E-28 212.0 37.2 321 120-517 44-368 (656)
9 PRK11447 cellulose synthase su 99.9 2.3E-23 4.9E-28 222.6 39.5 341 124-517 275-727 (1157)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 1.5E-22 3.2E-27 215.9 37.7 260 205-518 603-888 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-22 2.8E-27 216.3 36.6 302 122-484 571-898 (899)
12 PRK11788 tetratricopeptide rep 99.9 6.6E-22 1.4E-26 189.0 36.8 314 116-487 33-348 (389)
13 KOG1130 Predicted G-alpha GTPa 99.9 3.5E-23 7.7E-28 179.7 24.9 328 168-516 23-370 (639)
14 KOG1130 Predicted G-alpha GTPa 99.9 2.6E-22 5.7E-27 174.4 25.7 331 121-473 20-371 (639)
15 PRK11447 cellulose synthase su 99.9 1.3E-21 2.8E-26 209.3 34.9 313 122-485 355-739 (1157)
16 KOG2002 TPR-containing nuclear 99.9 1.3E-20 2.8E-25 180.8 33.8 252 242-518 411-697 (1018)
17 PRK11788 tetratricopeptide rep 99.9 1.6E-20 3.5E-25 179.4 33.6 277 162-486 35-311 (389)
18 KOG1126 DNA-binding cell divis 99.9 8.8E-22 1.9E-26 181.9 23.0 295 125-487 326-621 (638)
19 KOG2002 TPR-containing nuclear 99.9 5.6E-20 1.2E-24 176.5 34.6 326 132-518 250-581 (1018)
20 PRK10049 pgaA outer membrane p 99.9 5.8E-20 1.3E-24 188.0 36.9 339 121-518 52-444 (765)
21 KOG0547 Translocase of outer m 99.9 1.7E-20 3.6E-25 166.7 28.0 329 116-489 113-569 (606)
22 PRK10049 pgaA outer membrane p 99.9 9.2E-19 2E-23 179.2 38.1 340 121-518 18-410 (765)
23 KOG1126 DNA-binding cell divis 99.9 1.7E-20 3.8E-25 173.4 22.0 292 160-518 315-608 (638)
24 PRK09782 bacteriophage N4 rece 99.9 7.8E-19 1.7E-23 179.8 36.3 304 119-487 377-707 (987)
25 PRK09782 bacteriophage N4 rece 99.9 8E-19 1.7E-23 179.7 30.9 269 158-487 471-741 (987)
26 KOG1155 Anaphase-promoting com 99.9 2.3E-18 5E-23 152.3 28.8 278 158-485 258-535 (559)
27 KOG1173 Anaphase-promoting com 99.8 1.1E-18 2.5E-23 158.2 25.3 279 113-444 239-518 (611)
28 KOG1155 Anaphase-promoting com 99.8 2.5E-18 5.5E-23 152.1 25.5 268 124-443 268-535 (559)
29 KOG2076 RNA polymerase III tra 99.8 2.6E-17 5.6E-22 157.4 31.6 322 113-483 134-509 (895)
30 PLN03218 maturation of RBCL 1; 99.8 2.4E-16 5.1E-21 162.9 39.5 305 123-484 442-746 (1060)
31 PRK04841 transcriptional regul 99.8 3E-16 6.5E-21 166.5 41.2 435 41-488 260-762 (903)
32 KOG2003 TPR repeat-containing 99.8 2.1E-18 4.5E-23 152.2 19.9 342 125-515 244-708 (840)
33 PLN03218 maturation of RBCL 1; 99.8 2.7E-16 5.9E-21 162.5 38.2 308 121-485 475-782 (1060)
34 KOG0548 Molecular co-chaperone 99.8 6.7E-17 1.4E-21 146.2 29.2 324 121-487 5-456 (539)
35 KOG1173 Anaphase-promoting com 99.8 4.8E-17 1E-21 147.7 23.9 278 160-487 242-519 (611)
36 KOG1129 TPR repeat-containing 99.8 1.1E-17 2.4E-22 141.6 17.7 282 128-464 189-470 (478)
37 PLN03081 pentatricopeptide (PP 99.8 1.2E-16 2.6E-21 163.3 28.1 328 121-518 192-545 (697)
38 KOG0624 dsRNA-activated protei 99.8 8.6E-16 1.9E-20 131.1 27.7 319 117-487 37-371 (504)
39 KOG0547 Translocase of outer m 99.8 1.3E-16 2.9E-21 142.2 23.6 272 133-447 294-569 (606)
40 KOG1941 Acetylcholine receptor 99.8 5.7E-15 1.2E-19 127.0 31.9 346 121-488 9-362 (518)
41 COG2956 Predicted N-acetylgluc 99.8 1.5E-14 3.2E-19 122.8 33.9 306 121-485 38-346 (389)
42 PRK14574 hmsH outer membrane p 99.8 1.9E-15 4.1E-20 152.0 32.5 165 332-518 330-501 (822)
43 KOG2003 TPR repeat-containing 99.8 1.9E-15 4.2E-20 133.7 28.2 195 245-482 524-718 (840)
44 PRK12370 invasion protein regu 99.8 3.3E-16 7.2E-21 154.6 26.5 251 132-443 275-534 (553)
45 PF13429 TPR_15: Tetratricopep 99.8 7.9E-18 1.7E-22 152.3 13.7 266 122-444 12-277 (280)
46 TIGR00540 hemY_coli hemY prote 99.8 5.5E-15 1.2E-19 140.7 33.3 316 118-489 84-402 (409)
47 PRK12370 invasion protein regu 99.8 2E-15 4.3E-20 149.1 31.1 263 164-485 260-534 (553)
48 KOG1129 TPR repeat-containing 99.8 2.2E-16 4.7E-21 133.8 20.6 280 158-487 177-459 (478)
49 PF13429 TPR_15: Tetratricopep 99.8 7.2E-18 1.6E-22 152.5 12.0 266 167-487 13-278 (280)
50 TIGR02521 type_IV_pilW type IV 99.7 1.1E-15 2.3E-20 135.3 25.1 204 242-485 28-231 (234)
51 PLN03081 pentatricopeptide (PP 99.7 1.7E-15 3.6E-20 154.9 29.3 293 124-486 265-557 (697)
52 COG3063 PilF Tfp pilus assembl 99.7 1.2E-15 2.5E-20 123.6 21.6 206 242-487 32-237 (250)
53 COG3063 PilF Tfp pilus assembl 99.7 1.2E-15 2.7E-20 123.4 21.6 204 200-443 32-235 (250)
54 KOG1941 Acetylcholine receptor 99.7 9.7E-15 2.1E-19 125.6 28.0 332 166-517 10-347 (518)
55 cd05804 StaR_like StaR_like; a 99.7 4.1E-14 8.8E-19 133.5 35.0 336 121-498 9-347 (355)
56 TIGR02521 type_IV_pilW type IV 99.7 3.5E-15 7.6E-20 132.0 24.8 204 200-443 28-231 (234)
57 PRK11189 lipoprotein NlpI; Pro 99.7 1.1E-14 2.3E-19 131.8 27.7 227 175-444 39-265 (296)
58 PRK10747 putative protoheme IX 99.7 6.1E-14 1.3E-18 132.7 33.6 302 119-488 85-392 (398)
59 COG2956 Predicted N-acetylgluc 99.7 4.5E-14 9.8E-19 119.9 28.7 272 166-485 39-310 (389)
60 PRK14574 hmsH outer membrane p 99.7 8.4E-14 1.8E-18 140.3 35.6 331 121-499 105-521 (822)
61 PRK11189 lipoprotein NlpI; Pro 99.7 8.7E-15 1.9E-19 132.5 25.2 228 216-487 39-266 (296)
62 KOG2076 RNA polymerase III tra 99.7 6.6E-14 1.4E-18 134.5 31.0 280 120-442 175-510 (895)
63 PLN03077 Protein ECB2; Provisi 99.7 2.7E-14 5.8E-19 149.7 31.2 153 331-518 556-708 (857)
64 PRK04841 transcriptional regul 99.7 3.3E-13 7.1E-18 143.4 39.5 306 123-447 457-763 (903)
65 PLN03077 Protein ECB2; Provisi 99.7 5.8E-14 1.2E-18 147.3 33.2 353 88-517 232-641 (857)
66 KOG1125 TPR repeat-containing 99.7 7.1E-15 1.5E-19 134.5 22.1 208 121-361 288-530 (579)
67 KOG1174 Anaphase-promoting com 99.7 9.6E-14 2.1E-18 121.7 27.6 299 123-487 201-501 (564)
68 KOG0550 Molecular chaperone (D 99.7 1.2E-14 2.5E-19 127.4 21.7 291 116-445 47-351 (486)
69 KOG1125 TPR repeat-containing 99.7 1.7E-14 3.7E-19 132.0 20.1 267 166-475 289-560 (579)
70 KOG0548 Molecular co-chaperone 99.7 1.8E-13 3.8E-18 124.4 26.4 308 166-518 6-443 (539)
71 TIGR00540 hemY_coli hemY prote 99.6 4.9E-13 1.1E-17 127.4 30.6 302 162-517 84-386 (409)
72 cd05804 StaR_like StaR_like; a 99.6 7.5E-13 1.6E-17 124.9 31.5 321 158-518 2-324 (355)
73 KOG1174 Anaphase-promoting com 99.6 2.8E-13 6.1E-18 118.8 25.7 268 117-444 231-500 (564)
74 KOG0624 dsRNA-activated protei 99.6 1E-12 2.3E-17 112.5 27.7 283 116-444 70-370 (504)
75 KOG4162 Predicted calmodulin-b 99.6 2.3E-12 5E-17 122.0 32.6 310 126-488 402-785 (799)
76 KOG4162 Predicted calmodulin-b 99.6 5.4E-12 1.2E-16 119.5 34.6 336 125-518 330-771 (799)
77 PRK10747 putative protoheme IX 99.6 4.6E-12 1E-16 120.0 33.4 289 162-517 84-377 (398)
78 KOG0550 Molecular chaperone (D 99.6 1E-13 2.3E-18 121.6 18.3 285 161-487 48-351 (486)
79 TIGR03302 OM_YfiO outer membra 99.6 8.2E-13 1.8E-17 116.5 23.1 182 282-485 28-231 (235)
80 TIGR03302 OM_YfiO outer membra 99.6 1.1E-12 2.5E-17 115.5 22.9 180 242-443 30-231 (235)
81 KOG1156 N-terminal acetyltrans 99.6 1.4E-11 2.9E-16 114.6 30.0 318 121-486 10-434 (700)
82 KOG0495 HAT repeat protein [RN 99.5 6.9E-11 1.5E-15 110.0 31.0 309 119-487 517-847 (913)
83 KOG2376 Signal recognition par 99.5 3.1E-10 6.8E-15 104.7 32.6 329 119-491 13-410 (652)
84 PF14938 SNAP: Soluble NSF att 99.5 1.1E-11 2.3E-16 111.5 22.1 226 243-481 33-261 (282)
85 PF14938 SNAP: Soluble NSF att 99.5 1.1E-11 2.3E-16 111.6 21.5 213 285-512 33-246 (282)
86 KOG2376 Signal recognition par 99.5 1.3E-09 2.9E-14 100.6 34.8 335 122-487 83-488 (652)
87 KOG0495 HAT repeat protein [RN 99.5 6E-10 1.3E-14 104.0 31.7 275 155-487 509-783 (913)
88 KOG1127 TPR repeat-containing 99.4 4.7E-11 1E-15 116.2 24.7 363 121-518 565-1024(1238)
89 PF12569 NARP1: NMDA receptor- 99.4 1.3E-09 2.8E-14 104.4 32.9 314 121-492 7-340 (517)
90 COG3071 HemY Uncharacterized e 99.4 7.5E-09 1.6E-13 91.5 33.7 305 120-488 86-392 (400)
91 KOG1156 N-terminal acetyltrans 99.4 7.6E-09 1.6E-13 96.8 35.5 313 123-485 80-467 (700)
92 PLN02789 farnesyltranstransfer 99.4 4E-10 8.6E-15 101.8 26.5 219 202-470 36-268 (320)
93 PLN02789 farnesyltranstransfer 99.4 3.9E-10 8.4E-15 101.9 25.6 208 172-428 47-268 (320)
94 KOG1127 TPR repeat-containing 99.4 2.9E-09 6.3E-14 104.1 30.6 234 131-406 471-704 (1238)
95 COG2909 MalT ATP-dependent tra 99.4 5.6E-09 1.2E-13 101.6 32.2 413 39-483 264-685 (894)
96 PF12569 NARP1: NMDA receptor- 99.4 1.2E-09 2.6E-14 104.6 27.6 303 162-518 4-322 (517)
97 KOG3785 Uncharacterized conser 99.4 2.3E-09 5E-14 92.8 26.2 234 248-517 154-444 (557)
98 PF13424 TPR_12: Tetratricopep 99.3 6.7E-12 1.4E-16 88.8 8.9 78 411-489 1-78 (78)
99 PRK15179 Vi polysaccharide bio 99.3 2.8E-10 6E-15 113.1 21.6 169 119-317 49-218 (694)
100 PRK15179 Vi polysaccharide bio 99.3 4.5E-10 9.7E-15 111.6 22.0 156 176-359 63-218 (694)
101 KOG2300 Uncharacterized conser 99.3 7.2E-08 1.6E-12 87.2 33.4 371 118-516 7-540 (629)
102 KOG1915 Cell cycle control pro 99.3 1.1E-07 2.5E-12 85.8 33.5 337 121-487 110-537 (677)
103 PF13424 TPR_12: Tetratricopep 99.3 4.3E-11 9.3E-16 84.7 9.8 78 369-447 1-78 (78)
104 PRK15359 type III secretion sy 99.3 3.2E-10 6.9E-15 90.4 15.3 128 349-515 13-140 (144)
105 KOG1839 Uncharacterized protei 99.3 3.9E-09 8.5E-14 106.9 26.1 214 291-507 936-1149(1236)
106 PRK15359 type III secretion sy 99.3 1.9E-10 4.2E-15 91.7 13.5 126 138-299 13-138 (144)
107 PRK10370 formate-dependent nit 99.2 4.9E-09 1.1E-13 88.4 21.8 150 168-359 22-174 (198)
108 COG5010 TadD Flp pilus assembl 99.2 2.3E-09 5.1E-14 89.5 17.6 165 158-354 63-227 (257)
109 COG3071 HemY Uncharacterized e 99.2 4E-07 8.6E-12 80.8 31.3 288 163-517 85-377 (400)
110 PRK10370 formate-dependent nit 99.2 1.2E-08 2.6E-13 86.0 20.7 149 251-444 22-173 (198)
111 PRK14720 transcript cleavage f 99.2 9.5E-09 2.1E-13 103.2 23.2 234 155-426 24-268 (906)
112 KOG1128 Uncharacterized conser 99.2 2E-09 4.4E-14 101.9 16.9 227 204-495 399-625 (777)
113 PRK14720 transcript cleavage f 99.2 2.5E-08 5.5E-13 100.2 25.6 250 196-487 24-284 (906)
114 KOG2047 mRNA splicing factor [ 99.1 3.5E-07 7.6E-12 85.8 30.6 243 175-442 360-613 (835)
115 KOG3785 Uncharacterized conser 99.1 9.5E-08 2E-12 83.1 25.2 289 127-488 31-347 (557)
116 KOG3617 WD40 and TPR repeat-co 99.1 1.6E-07 3.4E-12 90.5 28.8 288 167-485 831-1173(1416)
117 KOG1585 Protein required for f 99.1 2.2E-07 4.8E-12 76.6 25.8 226 239-480 25-250 (308)
118 PF13525 YfiO: Outer membrane 99.1 4.1E-08 8.9E-13 83.6 22.9 169 118-307 5-198 (203)
119 KOG4340 Uncharacterized conser 99.1 7.2E-08 1.6E-12 81.8 22.9 229 126-397 18-265 (459)
120 CHL00033 ycf3 photosystem I as 99.1 5.5E-09 1.2E-13 86.4 16.0 117 200-329 32-155 (168)
121 PRK10866 outer membrane biogen 99.1 1.7E-07 3.6E-12 81.7 25.7 186 119-353 33-236 (243)
122 KOG1128 Uncharacterized conser 99.1 6.8E-09 1.5E-13 98.5 17.1 218 124-407 404-621 (777)
123 PF13525 YfiO: Outer membrane 99.1 6.7E-08 1.5E-12 82.2 21.9 170 286-477 4-198 (203)
124 COG5010 TadD Flp pilus assembl 99.1 2.1E-08 4.5E-13 84.0 17.8 165 283-482 63-227 (257)
125 KOG3617 WD40 and TPR repeat-co 99.1 1.1E-06 2.5E-11 84.8 31.3 265 158-442 854-1172(1416)
126 CHL00033 ycf3 photosystem I as 99.1 1.2E-08 2.5E-13 84.5 16.0 124 326-457 32-155 (168)
127 PRK10866 outer membrane biogen 99.1 2.6E-07 5.5E-12 80.6 24.9 188 245-482 32-237 (243)
128 PF10345 Cohesin_load: Cohesin 99.0 3.6E-05 7.7E-10 77.5 46.2 351 155-512 52-460 (608)
129 KOG2300 Uncharacterized conser 99.0 1.5E-05 3.2E-10 72.7 36.6 341 126-483 175-553 (629)
130 KOG1915 Cell cycle control pro 99.0 5.1E-06 1.1E-10 75.5 31.9 269 162-444 207-536 (677)
131 PF09976 TPR_21: Tetratricopep 99.0 6.3E-08 1.4E-12 77.7 18.6 123 299-442 23-145 (145)
132 PRK15363 pathogenicity island 99.0 8.2E-09 1.8E-13 80.5 12.7 102 200-317 32-133 (157)
133 KOG2047 mRNA splicing factor [ 99.0 6.6E-07 1.4E-11 84.1 27.2 243 129-400 358-613 (835)
134 KOG4340 Uncharacterized conser 99.0 1.3E-07 2.7E-12 80.4 20.5 224 173-439 21-265 (459)
135 KOG0553 TPR repeat-containing 99.0 5.9E-09 1.3E-13 88.9 12.8 101 115-232 78-178 (304)
136 PRK15363 pathogenicity island 99.0 1.6E-08 3.5E-13 78.9 14.1 103 242-360 32-134 (157)
137 PF09976 TPR_21: Tetratricopep 99.0 6.6E-08 1.4E-12 77.6 18.2 135 118-272 11-145 (145)
138 KOG3060 Uncharacterized conser 99.0 7.4E-07 1.6E-11 74.2 24.1 193 217-445 26-221 (289)
139 TIGR02552 LcrH_SycD type III s 99.0 2.3E-08 5.1E-13 79.5 15.4 102 241-358 13-114 (135)
140 TIGR02552 LcrH_SycD type III s 99.0 1.6E-08 3.6E-13 80.4 14.2 102 158-274 13-114 (135)
141 PF04733 Coatomer_E: Coatomer 99.0 1.5E-08 3.2E-13 90.5 14.0 263 124-457 7-273 (290)
142 PF04733 Coatomer_E: Coatomer 99.0 4.3E-08 9.4E-13 87.6 16.9 260 171-498 10-272 (290)
143 KOG3060 Uncharacterized conser 99.0 2.4E-06 5.2E-11 71.2 25.4 197 129-360 23-222 (289)
144 PRK02603 photosystem I assembl 98.9 6.3E-08 1.4E-12 80.3 15.8 114 324-452 30-150 (172)
145 KOG1585 Protein required for f 98.9 3.9E-06 8.4E-11 69.5 25.2 225 158-397 27-251 (308)
146 KOG1839 Uncharacterized protei 98.9 4.4E-08 9.6E-13 99.5 16.9 209 206-417 935-1143(1236)
147 PRK02603 photosystem I assembl 98.9 1E-07 2.3E-12 79.0 16.5 112 198-322 30-148 (172)
148 KOG0553 TPR repeat-containing 98.9 6.9E-08 1.5E-12 82.5 15.3 123 159-304 78-200 (304)
149 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.2E-07 2.6E-12 73.5 14.5 103 246-358 3-105 (119)
150 TIGR02795 tol_pal_ybgF tol-pal 98.9 6.5E-08 1.4E-12 75.0 12.8 103 330-444 3-105 (119)
151 COG4783 Putative Zn-dependent 98.8 5.9E-07 1.3E-11 82.0 19.2 153 284-487 303-455 (484)
152 PF12688 TPR_5: Tetratrico pep 98.8 2.1E-07 4.7E-12 70.3 12.7 101 331-443 3-103 (120)
153 PLN03088 SGT1, suppressor of 98.8 1.2E-07 2.6E-12 88.1 13.1 95 121-232 5-99 (356)
154 COG2909 MalT ATP-dependent tra 98.8 7.8E-05 1.7E-09 73.6 31.9 264 163-441 416-685 (894)
155 PF12688 TPR_5: Tetratrico pep 98.7 4.9E-07 1.1E-11 68.4 13.4 102 288-401 2-103 (120)
156 COG4783 Putative Zn-dependent 98.7 2.2E-06 4.8E-11 78.4 19.3 132 245-402 306-437 (484)
157 PF12895 Apc3: Anaphase-promot 98.7 1.2E-07 2.5E-12 67.9 9.1 84 130-229 1-84 (84)
158 PLN03088 SGT1, suppressor of 98.7 6.6E-07 1.4E-11 83.2 15.3 95 248-358 5-99 (356)
159 KOG3616 Selective LIM binding 98.7 5.7E-05 1.2E-09 72.6 27.4 207 121-357 663-910 (1636)
160 PF12895 Apc3: Anaphase-promot 98.7 2.1E-07 4.5E-12 66.6 8.9 83 216-313 2-84 (84)
161 KOG1586 Protein required for f 98.7 3.2E-05 6.9E-10 63.8 21.9 197 254-486 23-224 (288)
162 PF13414 TPR_11: TPR repeat; P 98.6 3.1E-07 6.8E-12 63.0 8.7 64 245-316 3-67 (69)
163 COG4105 ComL DNA uptake lipopr 98.6 2.3E-05 5E-10 66.3 21.1 175 118-310 34-227 (254)
164 PF10345 Cohesin_load: Cohesin 98.6 0.00097 2.1E-08 67.4 42.0 358 121-485 182-605 (608)
165 KOG0543 FKBP-type peptidyl-pro 98.6 2E-06 4.3E-11 77.1 15.1 139 205-359 210-356 (397)
166 KOG1070 rRNA processing protei 98.6 1.1E-05 2.4E-10 82.7 21.9 210 241-486 1454-1663(1710)
167 PRK10803 tol-pal system protei 98.6 2.3E-06 5E-11 75.1 15.4 103 120-233 144-247 (263)
168 KOG1070 rRNA processing protei 98.6 3.1E-05 6.6E-10 79.6 24.9 248 200-489 1455-1703(1710)
169 PF13414 TPR_11: TPR repeat; P 98.6 4.7E-07 1E-11 62.0 8.9 64 287-358 3-67 (69)
170 PRK10803 tol-pal system protei 98.6 2.3E-06 5E-11 75.1 15.0 102 331-444 144-246 (263)
171 KOG3081 Vesicle coat complex C 98.6 6.2E-05 1.3E-09 63.6 22.3 250 125-442 15-268 (299)
172 cd00189 TPR Tetratricopeptide 98.6 1.1E-06 2.3E-11 65.0 10.8 96 375-486 2-97 (100)
173 KOG3616 Selective LIM binding 98.5 0.00012 2.6E-09 70.4 26.0 210 246-485 662-910 (1636)
174 PF08631 SPO22: Meiosis protei 98.5 0.00048 1E-08 61.9 29.0 253 173-443 4-274 (278)
175 PF13432 TPR_16: Tetratricopep 98.5 3.9E-07 8.4E-12 61.6 6.9 60 420-487 2-61 (65)
176 KOG1464 COP9 signalosome, subu 98.5 3.2E-05 7E-10 65.2 19.3 243 175-429 40-286 (440)
177 cd00189 TPR Tetratricopeptide 98.5 1.1E-06 2.4E-11 64.9 10.2 96 247-358 2-97 (100)
178 KOG1586 Protein required for f 98.5 7.5E-05 1.6E-09 61.6 19.9 196 214-443 25-223 (288)
179 KOG2471 TPR repeat-containing 98.5 0.00026 5.5E-09 65.1 25.2 304 160-483 238-681 (696)
180 KOG4555 TPR repeat-containing 98.5 2.1E-05 4.5E-10 58.4 15.0 100 120-232 45-144 (175)
181 PF13432 TPR_16: Tetratricopep 98.5 1.3E-06 2.9E-11 58.9 8.4 59 292-358 2-60 (65)
182 COG1729 Uncharacterized protei 98.5 2.1E-06 4.6E-11 73.2 11.2 102 121-233 144-245 (262)
183 COG4105 ComL DNA uptake lipopr 98.5 0.00016 3.4E-09 61.4 21.6 172 286-479 33-226 (254)
184 KOG0543 FKBP-type peptidyl-pro 98.4 8.7E-06 1.9E-10 73.1 14.6 138 162-315 208-354 (397)
185 COG4785 NlpI Lipoprotein NlpI, 98.4 2.6E-05 5.6E-10 63.5 15.7 204 242-486 62-266 (297)
186 COG4785 NlpI Lipoprotein NlpI, 98.4 8.6E-05 1.9E-09 60.6 18.6 205 158-402 61-266 (297)
187 PF08631 SPO22: Meiosis protei 98.4 0.0013 2.9E-08 59.1 28.7 253 214-484 4-273 (278)
188 KOG4555 TPR repeat-containing 98.4 4.2E-05 9.1E-10 56.8 15.0 101 289-403 45-145 (175)
189 COG3898 Uncharacterized membra 98.4 0.0013 2.8E-08 58.9 26.5 262 124-443 126-391 (531)
190 KOG3081 Vesicle coat complex C 98.4 0.00041 8.9E-09 58.8 22.1 258 171-498 17-278 (299)
191 COG1729 Uncharacterized protei 98.4 5.6E-06 1.2E-10 70.7 11.0 102 376-487 144-245 (262)
192 KOG2796 Uncharacterized conser 98.3 0.00049 1.1E-08 58.1 21.3 186 125-358 129-315 (366)
193 PF13374 TPR_10: Tetratricopep 98.3 1.3E-06 2.8E-11 52.9 4.8 41 457-497 2-42 (42)
194 PRK10153 DNA-binding transcrip 98.3 4.4E-05 9.4E-10 74.3 17.5 135 160-316 337-482 (517)
195 COG3898 Uncharacterized membra 98.3 0.0024 5.3E-08 57.3 31.9 301 122-486 88-392 (531)
196 PF13512 TPR_18: Tetratricopep 98.3 2.7E-05 5.9E-10 59.9 12.4 104 119-233 11-129 (142)
197 PRK10153 DNA-binding transcrip 98.3 4.8E-05 1E-09 74.0 17.1 135 120-274 341-482 (517)
198 KOG2471 TPR repeat-containing 98.3 7.8E-05 1.7E-09 68.3 16.9 318 164-512 19-380 (696)
199 PRK11906 transcriptional regul 98.3 6.1E-05 1.3E-09 69.6 16.4 163 120-313 257-433 (458)
200 KOG1464 COP9 signalosome, subu 98.3 0.00021 4.5E-09 60.5 17.9 242 130-387 39-286 (440)
201 PF10300 DUF3808: Protein of u 98.2 0.0061 1.3E-07 59.1 30.9 173 299-496 200-386 (468)
202 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.6E-05 1E-09 70.7 14.9 119 335-482 175-293 (395)
203 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.7E-05 1.2E-09 70.1 15.5 119 251-398 175-293 (395)
204 PRK15331 chaperone protein Sic 98.2 1.2E-05 2.5E-10 63.4 9.3 101 114-231 33-133 (165)
205 PF13512 TPR_18: Tetratricopep 98.2 4.8E-05 1E-09 58.6 12.4 105 329-445 10-129 (142)
206 COG4700 Uncharacterized protei 98.2 0.00033 7.1E-09 55.9 17.0 136 245-404 89-224 (251)
207 COG4235 Cytochrome c biogenesi 98.2 5.9E-05 1.3E-09 65.4 14.0 113 241-375 152-267 (287)
208 COG4235 Cytochrome c biogenesi 98.2 0.00011 2.3E-09 63.9 15.5 103 158-275 152-257 (287)
209 PRK15331 chaperone protein Sic 98.2 4.1E-05 8.8E-10 60.4 11.6 100 370-485 34-133 (165)
210 KOG2796 Uncharacterized conser 98.2 0.00071 1.5E-08 57.2 19.1 139 163-317 178-316 (366)
211 PRK11906 transcriptional regul 98.1 0.00013 2.8E-09 67.6 15.8 162 206-398 258-432 (458)
212 COG4700 Uncharacterized protei 98.1 0.0023 4.9E-08 51.2 20.0 139 200-361 87-225 (251)
213 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 2.2E-05 4.8E-10 72.3 9.9 72 324-402 70-141 (453)
214 PF13374 TPR_10: Tetratricopep 98.1 7.4E-06 1.6E-10 49.5 4.8 41 415-455 2-42 (42)
215 COG0457 NrfG FOG: TPR repeat [ 98.1 0.0034 7.3E-08 55.3 24.4 207 245-487 59-266 (291)
216 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.9E-05 4.1E-10 72.8 9.2 72 410-486 70-141 (453)
217 PF14559 TPR_19: Tetratricopep 98.1 1.6E-05 3.5E-10 54.2 6.7 55 128-192 1-55 (68)
218 PF10300 DUF3808: Protein of u 98.0 0.016 3.4E-07 56.4 29.0 178 254-456 197-388 (468)
219 KOG4234 TPR repeat-containing 98.0 8.3E-05 1.8E-09 59.8 10.5 105 116-232 93-197 (271)
220 PF14559 TPR_19: Tetratricopep 98.0 3.4E-05 7.3E-10 52.6 6.9 53 256-316 2-54 (68)
221 COG5159 RPN6 26S proteasome re 98.0 0.0088 1.9E-07 51.4 25.8 230 122-361 7-238 (421)
222 KOG4234 TPR repeat-containing 98.0 0.00018 3.9E-09 57.9 11.5 100 206-316 98-197 (271)
223 PF12968 DUF3856: Domain of Un 97.9 0.0033 7.1E-08 46.1 15.6 122 287-408 7-135 (144)
224 KOG1463 26S proteasome regulat 97.9 0.016 3.5E-07 51.1 29.2 300 122-443 8-315 (411)
225 PF13371 TPR_9: Tetratricopept 97.9 0.00014 3.1E-09 50.2 8.6 58 293-358 1-58 (73)
226 PF02259 FAT: FAT domain; Int 97.9 0.026 5.6E-07 53.2 27.6 265 169-470 5-305 (352)
227 KOG1463 26S proteasome regulat 97.9 0.017 3.7E-07 51.0 23.5 260 119-398 49-312 (411)
228 PF13371 TPR_9: Tetratricopept 97.8 0.00016 3.4E-09 50.1 8.4 57 252-316 2-58 (73)
229 COG0457 NrfG FOG: TPR repeat [ 97.8 0.02 4.4E-07 50.2 30.6 229 175-444 36-265 (291)
230 KOG2610 Uncharacterized conser 97.8 0.025 5.5E-07 49.9 26.3 165 169-356 110-274 (491)
231 PF12968 DUF3856: Domain of Un 97.8 0.0081 1.8E-07 44.1 16.8 117 245-362 7-133 (144)
232 KOG2610 Uncharacterized conser 97.7 0.026 5.7E-07 49.8 23.8 170 120-314 105-274 (491)
233 PF13281 DUF4071: Domain of un 97.7 0.027 5.9E-07 51.8 23.1 204 134-358 115-334 (374)
234 PF04184 ST7: ST7 protein; In 97.7 0.014 3E-07 54.6 21.2 126 256-399 179-321 (539)
235 KOG4648 Uncharacterized conser 97.7 0.00046 9.9E-09 60.5 10.3 97 119-232 98-194 (536)
236 PF04184 ST7: ST7 protein; In 97.7 0.023 5E-07 53.2 21.4 128 212-355 177-321 (539)
237 KOG2041 WD40 repeat protein [G 97.7 0.046 9.9E-07 53.2 23.7 129 158-313 688-822 (1189)
238 PF09986 DUF2225: Uncharacteri 97.6 0.0011 2.4E-08 56.3 11.9 100 175-274 90-194 (214)
239 COG5159 RPN6 26S proteasome re 97.6 0.01 2.2E-07 51.0 17.2 227 250-488 8-237 (421)
240 PF09986 DUF2225: Uncharacteri 97.6 0.003 6.5E-08 53.8 14.2 100 341-443 89-193 (214)
241 PF03704 BTAD: Bacterial trans 97.6 0.0033 7.2E-08 50.5 14.0 116 118-240 6-133 (146)
242 COG2976 Uncharacterized protei 97.6 0.0097 2.1E-07 48.3 15.8 98 331-444 91-188 (207)
243 KOG1550 Extracellular protein 97.6 0.061 1.3E-06 53.6 25.0 281 134-485 228-537 (552)
244 KOG4642 Chaperone-dependent E3 97.6 0.00067 1.5E-08 56.4 9.3 102 118-236 10-111 (284)
245 KOG2053 Mitochondrial inherita 97.6 0.11 2.4E-06 52.2 31.1 235 126-402 17-255 (932)
246 KOG4648 Uncharacterized conser 97.6 0.00058 1.2E-08 59.9 9.4 94 249-358 101-194 (536)
247 PF03704 BTAD: Bacterial trans 97.5 0.0075 1.6E-07 48.4 14.9 110 207-324 10-133 (146)
248 PF13281 DUF4071: Domain of un 97.4 0.094 2E-06 48.4 25.8 205 218-444 114-334 (374)
249 PF10602 RPN7: 26S proteasome 97.4 0.013 2.9E-07 48.3 14.7 111 325-444 32-142 (177)
250 COG2976 Uncharacterized protei 97.4 0.034 7.4E-07 45.3 16.2 104 158-274 85-188 (207)
251 KOG4642 Chaperone-dependent E3 97.4 0.0011 2.5E-08 55.2 8.1 99 206-320 13-111 (284)
252 KOG0985 Vesicle coat protein c 97.4 0.11 2.4E-06 53.0 23.0 58 246-316 1105-1162(1666)
253 PF10602 RPN7: 26S proteasome 97.3 0.015 3.2E-07 48.1 14.6 111 283-402 32-142 (177)
254 KOG0545 Aryl-hydrocarbon recep 97.3 0.0066 1.4E-07 51.0 12.1 106 203-316 178-293 (329)
255 PF13176 TPR_7: Tetratricopept 97.3 0.00066 1.4E-08 39.0 4.7 31 459-489 1-31 (36)
256 KOG0545 Aryl-hydrocarbon recep 97.3 0.0065 1.4E-07 51.0 11.7 106 374-487 179-294 (329)
257 PF13176 TPR_7: Tetratricopept 97.3 0.00089 1.9E-08 38.4 4.8 31 417-447 1-31 (36)
258 KOG2053 Mitochondrial inherita 97.2 0.29 6.2E-06 49.5 23.8 191 214-440 20-215 (932)
259 KOG0985 Vesicle coat protein c 97.1 0.39 8.5E-06 49.3 25.1 187 205-445 1106-1309(1666)
260 PF12862 Apc5: Anaphase-promot 97.1 0.013 2.7E-07 42.7 10.8 81 297-381 8-89 (94)
261 PF12862 Apc5: Anaphase-promot 97.1 0.0098 2.1E-07 43.2 9.9 66 383-448 8-74 (94)
262 PF13431 TPR_17: Tetratricopep 97.0 0.00053 1.2E-08 38.7 2.3 32 141-182 2-33 (34)
263 KOG0551 Hsp90 co-chaperone CNS 97.0 0.012 2.6E-07 51.9 11.4 105 201-317 79-183 (390)
264 PF13428 TPR_14: Tetratricopep 97.0 0.0019 4.1E-08 39.1 4.9 42 416-465 2-43 (44)
265 PF13428 TPR_14: Tetratricopep 97.0 0.0024 5.2E-08 38.7 5.3 42 246-295 2-43 (44)
266 PF06552 TOM20_plant: Plant sp 97.0 0.0067 1.4E-07 48.7 8.9 92 134-235 7-105 (186)
267 KOG1550 Extracellular protein 97.0 0.24 5.2E-06 49.5 21.6 250 178-485 228-503 (552)
268 PF13431 TPR_17: Tetratricopep 96.9 0.0011 2.4E-08 37.3 3.0 32 268-307 2-33 (34)
269 PF00515 TPR_1: Tetratricopept 96.9 0.0026 5.7E-08 35.9 4.6 29 416-444 2-30 (34)
270 KOG2041 WD40 repeat protein [G 96.9 0.48 1E-05 46.6 29.1 32 198-229 791-822 (1189)
271 KOG1538 Uncharacterized conser 96.9 0.47 1E-05 46.2 21.9 181 208-441 637-830 (1081)
272 PF00515 TPR_1: Tetratricopept 96.9 0.0029 6.4E-08 35.7 4.6 30 458-487 2-31 (34)
273 KOG0551 Hsp90 co-chaperone CNS 96.8 0.021 4.5E-07 50.4 10.8 104 328-445 80-183 (390)
274 COG3118 Thioredoxin domain-con 96.7 0.27 5.8E-06 43.2 17.1 131 119-274 135-265 (304)
275 PF07719 TPR_2: Tetratricopept 96.7 0.0046 1E-07 34.8 4.6 30 458-487 2-31 (34)
276 PF06552 TOM20_plant: Plant sp 96.7 0.027 5.8E-07 45.3 10.1 81 411-492 21-108 (186)
277 PF10579 Rapsyn_N: Rapsyn N-te 96.7 0.039 8.4E-07 37.4 9.1 72 118-196 6-77 (80)
278 PF07719 TPR_2: Tetratricopept 96.7 0.0054 1.2E-07 34.6 4.6 29 416-444 2-30 (34)
279 PF05843 Suf: Suppressor of fo 96.7 0.039 8.5E-07 49.7 12.3 134 289-445 3-137 (280)
280 PF02259 FAT: FAT domain; Int 96.6 0.61 1.3E-05 43.9 27.0 130 242-385 143-304 (352)
281 PF05843 Suf: Suppressor of fo 96.6 0.083 1.8E-06 47.6 14.0 133 248-403 4-137 (280)
282 PF13181 TPR_8: Tetratricopept 96.5 0.0079 1.7E-07 33.9 4.6 30 458-487 2-31 (34)
283 PF13181 TPR_8: Tetratricopept 96.5 0.0086 1.9E-07 33.7 4.6 30 416-445 2-31 (34)
284 KOG1538 Uncharacterized conser 96.2 1.1 2.4E-05 43.8 18.9 188 167-399 637-830 (1081)
285 PF10516 SHNi-TPR: SHNi-TPR; 95.9 0.033 7.2E-07 32.0 4.9 36 458-493 2-37 (38)
286 KOG3783 Uncharacterized conser 95.8 1.9 4.1E-05 41.4 27.1 256 207-487 235-521 (546)
287 PF10579 Rapsyn_N: Rapsyn N-te 95.8 0.27 5.8E-06 33.5 9.6 66 334-406 11-76 (80)
288 PF04910 Tcf25: Transcriptiona 95.8 1.7 3.7E-05 40.7 18.7 152 241-403 36-223 (360)
289 KOG4814 Uncharacterized conser 95.7 2.4 5.2E-05 41.6 32.7 102 121-233 357-458 (872)
290 COG0790 FOG: TPR repeat, SEL1 95.6 1.7 3.7E-05 39.6 22.0 182 254-485 50-265 (292)
291 PF04910 Tcf25: Transcriptiona 95.5 2.2 4.7E-05 40.0 18.6 155 324-487 35-223 (360)
292 COG3118 Thioredoxin domain-con 95.5 1.6 3.5E-05 38.5 16.6 126 292-443 139-264 (304)
293 PF13174 TPR_6: Tetratricopept 95.4 0.028 6.1E-07 31.2 3.6 29 459-487 2-30 (33)
294 PF10516 SHNi-TPR: SHNi-TPR; 95.4 0.052 1.1E-06 31.2 4.5 36 416-451 2-37 (38)
295 KOG0376 Serine-threonine phosp 95.3 0.047 1E-06 50.9 6.4 93 250-358 9-101 (476)
296 KOG1308 Hsp70-interacting prot 95.2 0.01 2.3E-07 52.5 1.9 99 117-232 113-211 (377)
297 COG4649 Uncharacterized protei 95.1 1.4 3E-05 35.5 13.7 148 294-485 46-195 (221)
298 PF10952 DUF2753: Protein of u 95.1 0.98 2.1E-05 33.8 11.3 96 418-514 4-106 (140)
299 PF09613 HrpB1_HrpK: Bacterial 95.1 0.33 7.1E-06 38.7 9.6 91 112-219 4-94 (160)
300 KOG0376 Serine-threonine phosp 95.1 0.021 4.5E-07 53.2 3.4 95 121-232 7-101 (476)
301 PF13174 TPR_6: Tetratricopept 94.9 0.052 1.1E-06 30.1 3.7 28 417-444 2-29 (33)
302 COG0790 FOG: TPR repeat, SEL1 94.8 3.1 6.7E-05 37.9 22.1 167 128-343 51-236 (292)
303 KOG3783 Uncharacterized conser 94.8 4.1 8.9E-05 39.2 27.2 220 205-444 269-520 (546)
304 PF04781 DUF627: Protein of un 94.4 1.5 3.2E-05 32.5 10.8 100 124-230 2-105 (111)
305 KOG1914 mRNA cleavage and poly 94.4 5.2 0.00011 38.6 28.5 96 121-234 23-118 (656)
306 PF09613 HrpB1_HrpK: Bacterial 94.3 1.6 3.6E-05 34.8 11.7 90 241-346 6-95 (160)
307 PF11207 DUF2989: Protein of u 94.2 2.8 6.1E-05 34.9 13.4 83 213-307 116-198 (203)
308 PF00244 14-3-3: 14-3-3 protei 94.2 3.6 7.7E-05 35.9 20.6 186 248-448 4-202 (236)
309 PF14561 TPR_20: Tetratricopep 93.8 0.84 1.8E-05 32.7 8.5 36 158-193 18-53 (90)
310 PF00244 14-3-3: 14-3-3 protei 93.7 4.3 9.4E-05 35.4 22.1 186 290-492 4-204 (236)
311 PF11817 Foie-gras_1: Foie gra 93.7 4.6 9.9E-05 35.7 23.5 187 206-398 13-243 (247)
312 PF08424 NRDE-2: NRDE-2, neces 93.7 5.8 0.00012 36.7 20.2 148 283-445 15-184 (321)
313 KOG1308 Hsp70-interacting prot 93.5 0.065 1.4E-06 47.7 3.0 89 254-358 123-211 (377)
314 KOG4322 Anaphase-promoting com 93.5 6.6 0.00014 36.7 22.1 193 283-485 269-470 (482)
315 KOG0687 26S proteasome regulat 93.4 5.1 0.00011 35.9 14.0 128 265-403 84-211 (393)
316 KOG4322 Anaphase-promoting com 93.4 6.9 0.00015 36.6 23.8 197 240-443 268-470 (482)
317 COG4649 Uncharacterized protei 93.3 3.6 7.8E-05 33.2 15.8 132 122-273 62-195 (221)
318 KOG2114 Vacuolar assembly/sort 93.3 6.6 0.00014 40.0 16.3 50 184-233 349-398 (933)
319 TIGR02561 HrpB1_HrpK type III 93.3 0.93 2E-05 35.5 8.6 91 112-219 4-94 (153)
320 COG5187 RPN7 26S proteasome re 93.3 4.6 9.9E-05 35.5 13.4 132 262-404 92-223 (412)
321 PF11817 Foie-gras_1: Foie gra 93.1 5.9 0.00013 35.0 22.5 188 248-441 13-244 (247)
322 PF11207 DUF2989: Protein of u 92.8 1.2 2.6E-05 37.0 9.0 83 385-479 118-200 (203)
323 PF12739 TRAPPC-Trs85: ER-Golg 92.7 9.9 0.00021 36.6 18.8 178 164-361 210-402 (414)
324 smart00028 TPR Tetratricopepti 92.7 0.19 4E-06 27.2 3.3 29 458-486 2-30 (34)
325 KOG0890 Protein kinase of the 92.4 26 0.00056 40.7 29.3 68 411-488 1666-1733(2382)
326 PF07721 TPR_4: Tetratricopept 92.2 0.24 5.1E-06 25.7 2.9 24 459-482 3-26 (26)
327 PF04190 DUF410: Protein of un 92.2 8 0.00017 34.4 24.6 203 294-515 17-242 (260)
328 KOG2908 26S proteasome regulat 92.2 5.3 0.00012 36.0 12.7 90 129-222 86-176 (380)
329 PF12739 TRAPPC-Trs85: ER-Golg 92.2 12 0.00025 36.2 19.4 180 246-447 209-402 (414)
330 PF14853 Fis1_TPR_C: Fis1 C-te 92.1 2 4.2E-05 27.1 7.4 29 246-274 2-30 (53)
331 KOG1258 mRNA processing protei 92.1 13 0.00028 36.5 29.2 128 326-478 294-421 (577)
332 KOG4507 Uncharacterized conser 92.0 0.39 8.5E-06 46.1 6.0 96 206-316 610-705 (886)
333 smart00028 TPR Tetratricopepti 92.0 0.24 5.2E-06 26.7 3.2 29 288-316 2-30 (34)
334 PF14853 Fis1_TPR_C: Fis1 C-te 91.9 2.1 4.5E-05 26.9 7.9 28 331-358 3-30 (53)
335 PF04190 DUF410: Protein of un 91.7 9.3 0.0002 34.0 22.6 215 114-343 6-242 (260)
336 PF07721 TPR_4: Tetratricopept 91.6 0.3 6.6E-06 25.3 3.0 24 288-311 2-25 (26)
337 KOG4507 Uncharacterized conser 91.5 0.66 1.4E-05 44.7 6.9 91 253-358 615-705 (886)
338 COG5187 RPN7 26S proteasome re 91.5 9.4 0.0002 33.7 13.6 133 344-487 90-222 (412)
339 PF04781 DUF627: Protein of un 91.5 4.5 9.8E-05 30.0 10.7 105 379-496 2-110 (111)
340 KOG1914 mRNA cleavage and poly 91.2 15 0.00034 35.6 23.2 209 167-404 291-503 (656)
341 KOG0686 COP9 signalosome, subu 91.2 5.1 0.00011 37.1 11.7 107 286-399 149-255 (466)
342 KOG0687 26S proteasome regulat 91.2 11 0.00024 33.9 13.9 130 223-361 84-213 (393)
343 PF08424 NRDE-2: NRDE-2, neces 91.0 13 0.00028 34.4 18.1 128 134-275 47-184 (321)
344 TIGR02561 HrpB1_HrpK type III 90.9 5.8 0.00013 31.2 10.3 89 242-346 7-95 (153)
345 KOG3824 Huntingtin interacting 90.8 0.66 1.4E-05 40.9 5.7 67 116-192 114-180 (472)
346 KOG0686 COP9 signalosome, subu 90.6 4.6 9.9E-05 37.4 11.0 108 158-271 146-255 (466)
347 KOG0890 Protein kinase of the 90.4 41 0.00089 39.2 28.4 110 325-446 1666-1786(2382)
348 PF07079 DUF1347: Protein of u 90.4 16 0.00036 34.6 36.3 138 120-275 8-158 (549)
349 PF15015 NYD-SP12_N: Spermatog 90.3 16 0.00035 34.2 14.9 118 110-234 168-293 (569)
350 PRK14707 hypothetical protein; 90.0 43 0.00093 38.7 23.7 324 167-498 878-1208(2710)
351 KOG2114 Vacuolar assembly/sort 89.9 12 0.00025 38.4 14.0 48 310-358 350-397 (933)
352 PF04053 Coatomer_WDAD: Coatom 89.8 20 0.00044 34.7 16.6 157 173-399 272-428 (443)
353 PF10952 DUF2753: Protein of u 89.8 7 0.00015 29.4 10.9 73 206-278 4-83 (140)
354 PF10255 Paf67: RNA polymerase 89.7 6.2 0.00014 37.2 11.5 74 247-320 124-197 (404)
355 KOG4014 Uncharacterized conser 89.4 10 0.00023 30.9 12.0 164 161-362 33-237 (248)
356 PF15015 NYD-SP12_N: Spermatog 89.3 7 0.00015 36.4 11.1 104 207-318 180-293 (569)
357 PRK10941 hypothetical protein; 89.3 8.1 0.00018 34.4 11.5 70 121-204 184-253 (269)
358 COG3629 DnrI DNA-binding trans 89.0 16 0.00035 32.6 13.0 75 243-325 151-225 (280)
359 COG3629 DnrI DNA-binding trans 88.7 9.4 0.0002 34.0 11.3 77 159-242 150-226 (280)
360 PRK10941 hypothetical protein; 88.7 5.4 0.00012 35.5 10.0 80 369-461 177-256 (269)
361 PF09670 Cas_Cas02710: CRISPR- 88.4 23 0.0005 33.6 17.8 140 119-277 132-273 (379)
362 PF12854 PPR_1: PPR repeat 88.3 1.2 2.6E-05 24.9 3.8 26 330-355 8-33 (34)
363 PF08626 TRAPPC9-Trs120: Trans 88.2 20 0.00043 40.1 16.0 155 328-488 241-476 (1185)
364 KOG0508 Ankyrin repeat protein 87.8 1.3 2.8E-05 41.5 5.7 72 439-512 319-390 (615)
365 cd02682 MIT_AAA_Arch MIT: doma 87.5 6.4 0.00014 26.9 7.5 43 329-371 6-48 (75)
366 COG3947 Response regulator con 87.5 17 0.00036 32.3 11.7 75 245-327 279-353 (361)
367 PF08626 TRAPPC9-Trs120: Trans 87.4 25 0.00055 39.2 16.3 156 286-445 241-475 (1185)
368 cd02682 MIT_AAA_Arch MIT: doma 87.1 7.6 0.00016 26.5 8.0 42 118-159 6-47 (75)
369 PRK14707 hypothetical protein; 86.9 68 0.0015 37.3 22.8 313 167-490 836-1158(2710)
370 PRK13184 pknD serine/threonine 86.8 5.2 0.00011 42.4 10.0 111 337-461 483-593 (932)
371 KOG0508 Ankyrin repeat protein 86.7 0.56 1.2E-05 43.8 2.8 72 398-469 320-391 (615)
372 PF04053 Coatomer_WDAD: Coatom 86.5 21 0.00047 34.6 13.4 126 215-398 273-398 (443)
373 TIGR03504 FimV_Cterm FimV C-te 86.5 1.6 3.4E-05 26.2 3.7 25 461-485 3-27 (44)
374 PF09670 Cas_Cas02710: CRISPR- 86.1 32 0.00068 32.7 16.6 63 165-232 134-198 (379)
375 PF13041 PPR_2: PPR repeat fam 86.1 4.5 9.8E-05 24.9 6.0 28 416-443 4-31 (50)
376 TIGR03504 FimV_Cterm FimV C-te 86.0 1.6 3.5E-05 26.1 3.6 25 377-401 3-27 (44)
377 KOG4563 Cell cycle-regulated h 85.7 4.2 9E-05 37.0 7.5 70 113-184 36-105 (400)
378 PF10255 Paf67: RNA polymerase 85.3 1.9 4.2E-05 40.5 5.6 74 376-449 125-198 (404)
379 PF12854 PPR_1: PPR repeat 85.3 2.4 5.1E-05 23.7 3.9 28 286-313 6-33 (34)
380 COG4976 Predicted methyltransf 85.0 2 4.3E-05 36.3 4.9 56 127-192 4-59 (287)
381 KOG4014 Uncharacterized conser 83.5 23 0.00051 29.0 12.9 150 310-493 51-240 (248)
382 COG3947 Response regulator con 82.9 22 0.00047 31.7 10.3 74 331-414 281-354 (361)
383 KOG2561 Adaptor protein NUB1, 82.5 15 0.00032 34.6 9.7 116 375-490 165-300 (568)
384 PF13041 PPR_2: PPR repeat fam 82.5 7.2 0.00016 24.0 5.8 30 245-274 3-32 (50)
385 KOG3024 Uncharacterized conser 82.3 31 0.00066 30.6 11.0 109 113-229 41-153 (312)
386 cd02681 MIT_calpain7_1 MIT: do 82.2 14 0.0003 25.4 8.8 35 117-151 5-39 (76)
387 KOG2561 Adaptor protein NUB1, 81.9 15 0.00033 34.5 9.5 117 331-448 165-300 (568)
388 cd02683 MIT_1 MIT: domain cont 81.9 14 0.00031 25.4 7.9 36 118-153 6-41 (77)
389 COG2178 Predicted RNA-binding 81.8 29 0.00062 28.8 10.3 132 142-285 20-161 (204)
390 PF01535 PPR: PPR repeat; Int 81.7 2.8 6E-05 22.3 3.3 27 331-357 2-28 (31)
391 smart00101 14_3_3 14-3-3 homol 81.6 36 0.00078 29.8 24.9 183 121-317 4-201 (244)
392 COG4976 Predicted methyltransf 80.2 2.9 6.2E-05 35.4 4.1 55 171-232 4-58 (287)
393 KOG2581 26S proteasome regulat 80.2 53 0.0011 30.9 21.2 144 126-275 134-277 (493)
394 KOG4814 Uncharacterized conser 80.2 68 0.0015 32.2 31.8 107 203-319 354-460 (872)
395 PF01535 PPR: PPR repeat; Int 79.9 3.6 7.7E-05 21.9 3.3 27 289-315 2-28 (31)
396 KOG2908 26S proteasome regulat 79.7 49 0.0011 30.2 15.7 93 338-435 84-177 (380)
397 KOG3824 Huntingtin interacting 79.5 8 0.00017 34.4 6.7 59 250-316 121-179 (472)
398 KOG4563 Cell cycle-regulated h 79.2 6.5 0.00014 35.9 6.2 60 375-434 43-102 (400)
399 smart00101 14_3_3 14-3-3 homol 79.0 44 0.00096 29.3 23.8 185 291-490 5-204 (244)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 78.8 28 0.0006 26.9 12.0 86 387-484 40-126 (126)
401 PF14561 TPR_20: Tetratricopep 78.3 22 0.00048 25.4 9.2 33 411-443 18-50 (90)
402 KOG2422 Uncharacterized conser 77.8 77 0.0017 31.4 16.4 175 216-403 251-449 (665)
403 TIGR00756 PPR pentatricopeptid 77.3 6.2 0.00013 21.5 4.0 27 331-357 2-28 (35)
404 PHA02537 M terminase endonucle 76.8 32 0.0007 29.7 9.5 110 125-235 90-210 (230)
405 cd02683 MIT_1 MIT: domain cont 76.7 22 0.00047 24.6 7.4 31 332-362 9-39 (77)
406 cd02679 MIT_spastin MIT: domai 76.5 22 0.00048 24.6 6.9 34 417-450 10-43 (79)
407 PF04212 MIT: MIT (microtubule 76.0 21 0.00045 23.9 8.5 35 119-153 6-40 (69)
408 PRK15180 Vi polysaccharide bio 76.0 13 0.00029 35.3 7.5 126 124-274 295-420 (831)
409 TIGR00756 PPR pentatricopeptid 74.8 7.8 0.00017 21.1 3.9 27 289-315 2-28 (35)
410 PF13812 PPR_3: Pentatricopept 73.3 11 0.00023 20.5 4.2 27 331-357 3-29 (34)
411 KOG2581 26S proteasome regulat 73.1 84 0.0018 29.6 21.9 141 171-317 135-277 (493)
412 PF07720 TPR_3: Tetratricopept 72.7 15 0.00033 20.8 4.6 23 459-481 3-25 (36)
413 PF10373 EST1_DNA_bind: Est1 D 72.3 73 0.0016 28.6 13.1 62 264-341 1-62 (278)
414 KOG1310 WD40 repeat protein [G 72.3 33 0.00073 33.3 9.1 97 117-230 373-472 (758)
415 KOG3364 Membrane protein invol 71.9 45 0.00097 26.0 10.4 68 160-232 30-100 (149)
416 PF07163 Pex26: Pex26 protein; 70.7 78 0.0017 28.2 14.3 136 204-353 36-182 (309)
417 KOG3807 Predicted membrane pro 70.5 86 0.0019 28.6 17.2 114 124-273 190-303 (556)
418 cd02678 MIT_VPS4 MIT: domain c 70.5 31 0.00068 23.6 8.6 35 118-152 6-40 (75)
419 KOG4521 Nuclear pore complex, 70.0 1.7E+02 0.0038 31.9 19.9 185 288-487 921-1133(1480)
420 PRK15180 Vi polysaccharide bio 69.9 20 0.00044 34.2 7.1 121 298-444 300-420 (831)
421 PF13812 PPR_3: Pentatricopept 69.2 15 0.00033 19.8 4.3 28 288-315 2-29 (34)
422 KOG2422 Uncharacterized conser 69.2 1.3E+02 0.0027 30.0 16.6 179 300-488 251-450 (665)
423 KOG1497 COP9 signalosome, subu 68.6 93 0.002 28.3 19.8 110 328-442 102-211 (399)
424 smart00745 MIT Microtubule Int 68.3 36 0.00077 23.3 8.9 36 117-152 7-42 (77)
425 KOG0276 Vesicle coat complex C 67.8 32 0.0007 34.0 8.2 50 254-316 646-695 (794)
426 PF05053 Menin: Menin; InterP 67.6 1.4E+02 0.0029 29.7 14.2 73 287-362 277-351 (618)
427 KOG1497 COP9 signalosome, subu 66.9 1E+02 0.0022 28.1 19.4 110 285-399 101-210 (399)
428 PF09311 Rab5-bind: Rabaptin-l 66.8 12 0.00027 31.0 4.8 49 450-498 133-181 (181)
429 PF04212 MIT: MIT (microtubule 66.7 36 0.00077 22.7 7.2 32 331-362 7-38 (69)
430 PF07720 TPR_3: Tetratricopept 66.5 22 0.00047 20.2 4.6 24 416-439 2-25 (36)
431 KOG4521 Nuclear pore complex, 66.1 2.1E+02 0.0045 31.4 19.0 184 247-445 922-1133(1480)
432 COG2912 Uncharacterized conser 65.8 61 0.0013 28.8 8.9 66 117-192 179-245 (269)
433 cd02679 MIT_spastin MIT: domai 65.5 43 0.00093 23.3 7.2 55 250-315 13-67 (79)
434 PF07079 DUF1347: Protein of u 65.4 1.3E+02 0.0029 28.9 36.5 72 160-233 77-158 (549)
435 KOG2063 Vacuolar assembly/sort 65.1 1.7E+02 0.0036 31.3 13.2 185 289-485 506-712 (877)
436 PRK13184 pknD serine/threonine 64.6 2.1E+02 0.0046 31.0 29.7 100 126-233 483-582 (932)
437 KOG3807 Predicted membrane pro 64.2 1.2E+02 0.0025 27.8 17.8 52 257-318 196-247 (556)
438 PF05053 Menin: Menin; InterP 63.4 1.6E+02 0.0035 29.2 13.7 57 388-447 294-350 (618)
439 KOG1920 IkappaB kinase complex 63.4 2.4E+02 0.0051 31.0 23.2 64 335-401 958-1027(1265)
440 KOG3024 Uncharacterized conser 63.3 1.1E+02 0.0024 27.3 13.6 62 420-482 90-152 (312)
441 smart00745 MIT Microtubule Int 63.0 46 0.001 22.8 8.1 29 334-362 13-41 (77)
442 cd02680 MIT_calpain7_2 MIT: do 62.4 22 0.00047 24.4 4.5 32 119-150 7-38 (75)
443 KOG1258 mRNA processing protei 62.4 1.7E+02 0.0038 29.2 32.2 175 285-487 295-471 (577)
444 PF10373 EST1_DNA_bind: Est1 D 61.8 1.2E+02 0.0025 27.2 10.8 62 306-385 1-62 (278)
445 KOG0276 Vesicle coat complex C 61.8 52 0.0011 32.7 8.3 121 331-485 616-749 (794)
446 PF10938 YfdX: YfdX protein; 61.5 37 0.0008 27.4 6.5 112 332-443 5-145 (155)
447 cd02656 MIT MIT: domain contai 61.5 49 0.0011 22.5 8.5 33 120-152 8-40 (75)
448 PF10938 YfdX: YfdX protein; 61.4 20 0.00043 28.9 4.9 108 166-273 6-145 (155)
449 KOG3364 Membrane protein invol 61.4 77 0.0017 24.8 10.3 66 286-358 31-100 (149)
450 PF08311 Mad3_BUB1_I: Mad3/BUB 60.8 75 0.0016 24.5 12.3 86 217-314 40-126 (126)
451 COG4455 ImpE Protein of avirul 59.8 70 0.0015 27.4 7.7 59 124-192 7-65 (273)
452 KOG0128 RNA-binding protein SA 59.7 2.3E+02 0.005 29.7 22.5 247 130-401 91-340 (881)
453 PF09205 DUF1955: Domain of un 59.4 83 0.0018 24.5 7.6 60 121-190 88-148 (161)
454 cd02681 MIT_calpain7_1 MIT: do 59.4 56 0.0012 22.5 8.2 31 289-319 8-38 (76)
455 cd02684 MIT_2 MIT: domain cont 57.8 59 0.0013 22.3 8.4 48 118-166 6-53 (75)
456 PF10858 DUF2659: Protein of u 57.3 1E+02 0.0022 24.9 14.4 103 377-485 97-199 (220)
457 PF14863 Alkyl_sulf_dimr: Alky 56.3 47 0.001 26.2 6.1 48 119-176 71-118 (141)
458 PHA02537 M terminase endonucle 56.0 1.4E+02 0.003 26.0 10.1 103 172-276 93-209 (230)
459 cd02677 MIT_SNX15 MIT: domain 55.8 64 0.0014 22.1 7.8 35 118-152 6-40 (75)
460 PF09311 Rab5-bind: Rabaptin-l 53.2 43 0.00094 27.8 5.8 47 409-455 134-180 (181)
461 PF10858 DUF2659: Protein of u 52.8 1.2E+02 0.0027 24.5 14.3 129 301-443 71-199 (220)
462 cd02678 MIT_VPS4 MIT: domain c 50.6 79 0.0017 21.6 7.8 29 334-362 11-39 (75)
463 TIGR02710 CRISPR-associated pr 50.2 2.3E+02 0.005 26.9 13.9 58 335-397 136-195 (380)
464 PF08969 USP8_dimer: USP8 dime 50.0 35 0.00075 25.8 4.4 39 458-498 39-77 (115)
465 KOG2758 Translation initiation 49.2 2.1E+02 0.0046 26.2 15.9 74 283-361 125-199 (432)
466 COG3014 Uncharacterized protei 49.2 2.2E+02 0.0048 26.3 17.4 29 291-319 62-90 (449)
467 PF07163 Pex26: Pex26 protein; 49.2 2E+02 0.0043 25.8 13.3 141 246-397 36-182 (309)
468 KOG1310 WD40 repeat protein [G 48.8 1.3E+02 0.0028 29.6 8.5 84 258-357 387-473 (758)
469 PF09205 DUF1955: Domain of un 47.1 1.4E+02 0.003 23.4 7.1 30 414-443 119-148 (161)
470 KOG1920 IkappaB kinase complex 45.2 4.7E+02 0.01 29.0 23.5 64 293-357 958-1027(1265)
471 cd02656 MIT MIT: domain contai 44.8 98 0.0021 21.0 8.0 29 334-362 11-39 (75)
472 COG3014 Uncharacterized protei 44.1 2.7E+02 0.0058 25.8 17.0 29 249-277 62-90 (449)
473 KOG2063 Vacuolar assembly/sort 43.7 4.5E+02 0.0097 28.3 12.3 182 165-357 507-712 (877)
474 COG4455 ImpE Protein of avirul 43.2 2.2E+02 0.0047 24.6 8.3 72 296-382 10-81 (273)
475 smart00671 SEL1 Sel1-like repe 42.7 57 0.0012 17.8 3.9 27 459-485 3-33 (36)
476 COG3914 Spy Predicted O-linked 42.1 3.8E+02 0.0082 27.0 12.4 106 238-360 61-173 (620)
477 PF06957 COPI_C: Coatomer (COP 41.7 3E+02 0.0065 26.6 9.9 33 116-148 202-234 (422)
478 COG2912 Uncharacterized conser 41.3 1.7E+02 0.0036 26.1 7.6 68 369-444 177-244 (269)
479 TIGR02710 CRISPR-associated pr 40.1 3.4E+02 0.0073 25.9 14.6 58 168-227 136-195 (380)
480 PF04097 Nic96: Nup93/Nic96; 39.7 4.5E+02 0.0097 27.2 20.8 18 211-228 266-283 (613)
481 PF14689 SPOB_a: Sensor_kinase 39.4 1.1E+02 0.0024 20.0 5.0 35 115-149 20-54 (62)
482 PF04097 Nic96: Nup93/Nic96; 38.8 4.6E+02 0.01 27.1 21.7 33 368-400 409-441 (613)
483 smart00386 HAT HAT (Half-A-TPR 38.7 61 0.0013 16.9 3.6 16 132-147 1-16 (33)
484 KOG2396 HAT (Half-A-TPR) repea 38.2 4.1E+02 0.0088 26.2 10.8 78 161-250 104-182 (568)
485 PF08969 USP8_dimer: USP8 dime 37.7 76 0.0017 23.9 4.6 39 415-455 38-76 (115)
486 KOG2062 26S proteasome regulat 37.6 5E+02 0.011 27.1 21.2 183 292-511 506-689 (929)
487 KOG4279 Serine/threonine prote 37.5 4.6E+02 0.01 27.4 10.7 105 158-274 197-316 (1226)
488 KOG2709 Uncharacterized conser 36.0 1.5E+02 0.0032 28.1 6.6 32 416-447 23-54 (560)
489 COG5107 RNA14 Pre-mRNA 3'-end 35.2 4.3E+02 0.0094 25.7 20.1 63 202-275 301-363 (660)
490 cd09034 BRO1_Alix_like Protein 34.9 3.8E+02 0.0083 25.0 13.1 59 433-491 211-285 (345)
491 cd02684 MIT_2 MIT: domain cont 34.6 1.5E+02 0.0033 20.3 7.9 27 336-362 13-39 (75)
492 COG3914 Spy Predicted O-linked 34.5 5E+02 0.011 26.2 13.9 106 366-488 61-173 (620)
493 KOG2396 HAT (Half-A-TPR) repea 34.5 4.7E+02 0.01 25.9 11.5 77 287-378 105-182 (568)
494 KOG2758 Translation initiation 34.0 3.8E+02 0.0082 24.7 20.6 182 155-360 122-319 (432)
495 smart00777 Mad3_BUB1_I Mad3/BU 32.2 2.4E+02 0.0051 21.8 9.3 78 349-439 46-123 (125)
496 cd02677 MIT_SNX15 MIT: domain 31.3 1.8E+02 0.0038 20.0 7.7 23 340-362 17-39 (75)
497 KOG4279 Serine/threonine prote 31.1 6.4E+02 0.014 26.4 11.9 127 196-344 194-335 (1226)
498 KOG0546 HSP90 co-chaperone CPR 29.2 1.1E+02 0.0024 28.4 4.7 102 334-443 227-337 (372)
499 PF12753 Nro1: Nuclear pore co 27.8 84 0.0018 29.6 3.9 38 474-516 328-365 (404)
500 KOG2582 COP9 signalosome, subu 27.3 2.8E+02 0.0061 26.0 6.9 107 331-443 104-211 (422)
No 1
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=1.6e-33 Score=262.13 Aligned_cols=311 Identities=28% Similarity=0.382 Sum_probs=294.2
Q ss_pred HHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 010063 188 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267 (519)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 267 (519)
.....+..+...|....+...++..|..+|+|++|+..+++++++..+..|.+++.+......+|.+|..++++.+|+.+
T Consensus 184 ~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~l 263 (508)
T KOG1840|consen 184 LDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNL 263 (508)
T ss_pred HHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33334456778888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 010063 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE 347 (519)
Q Consensus 268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 347 (519)
|++|+.+.+...|+++|.++.++.+||.+|...|++++|..++++|++|.++..+..++.+...+.+++.++..++++++
T Consensus 264 y~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee 343 (508)
T KOG1840|consen 264 YEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE 343 (508)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 010063 348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 427 (519)
Q Consensus 348 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 427 (519)
|..++++++++... .++++++.++.++.+||.+|..+|++++|.+++++++.+.++..+..++.+...+.++|..|.+
T Consensus 344 a~~l~q~al~i~~~--~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~ 421 (508)
T KOG1840|consen 344 AKKLLQKALKIYLD--APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE 421 (508)
T ss_pred HHHHHHHHHHHHHh--hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH
Confidence 99999999999985 3688888999999999999999999999999999999999999888899999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhh
Q 010063 428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKL 501 (519)
Q Consensus 428 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 501 (519)
.+++.+|..+|.++..+. +..|+++|++...+.+|+.+|..+|++++|+++..+++...+..+|..++.....
T Consensus 422 ~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (508)
T KOG1840|consen 422 LKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDE 494 (508)
T ss_pred hcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHH
Confidence 999999999999999999 8899999999999999999999999999999999999999999999988877544
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-36 Score=270.24 Aligned_cols=327 Identities=18% Similarity=0.213 Sum_probs=244.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc-----
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL----- 195 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----- 195 (519)
+-+.+..+...|++++|+.+|+.++++ .|...+++.++|.++...|+.+.|.+.|..++++...+
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel----------~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s 188 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIEL----------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARS 188 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhc----------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhc
Confidence 455888899999999999999999998 88888899999999999999888888888888764100
Q ss_pred ----------------------CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010063 196 ----------------------KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253 (519)
Q Consensus 196 ----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 253 (519)
-...|..+.+|.+||.++..+|+...|+..|++|+.+ +|....+|.++|.
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGn 260 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGN 260 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHH
Confidence 0011223334555666666666666666666666554 3555677777777
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010063 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC 333 (519)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 333 (519)
+|...+.+++|+..|.+|+.+ .|..+.++.++|.+|+++|..+-|+..|+++++. .|....+++
T Consensus 261 V~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~ 324 (966)
T KOG4626|consen 261 VYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYN 324 (966)
T ss_pred HHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHh
Confidence 777777777777777777765 5666777777777777777777777777777763 567777888
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010063 334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 413 (519)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (519)
+||..+...|+..+|+.+|.+++.+. +.+ +.+.++||.+|.++|.+++|..+|.+++++ .|.
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~-------p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~ 386 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLC-------PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPE 386 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhC-------Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------Chh
Confidence 88888888888888888888888773 223 445688888888888888888888888875 466
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010063 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (519)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 493 (519)
.+.+..+||.+|.++|++++|+.+|++++.+ .|..++++.++|.+|..+|+.+.|+..|.+|+.+.
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n------ 452 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN------ 452 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC------
Confidence 6778888888888888888888888888874 47778888888888888888888888888887754
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhc
Q 010063 494 DSLPVGKLFCFVLFGLVWFCLLLY 517 (519)
Q Consensus 494 ~~~~~~~~~~~~~l~~~~~~lg~~ 517 (519)
|.. +.+..|||.+|...|+.
T Consensus 453 --Pt~--AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 453 --PTF--AEAHSNLASIYKDSGNI 472 (966)
T ss_pred --cHH--HHHHhhHHHHhhccCCc
Confidence 333 45677888888887764
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-36 Score=272.06 Aligned_cols=292 Identities=16% Similarity=0.197 Sum_probs=260.7
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
.|..+.+|.++|.++..+|+...|+..|+++..+. |....+|.+||.+|...+.+++|+..|.+|+.+
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----- 281 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----- 281 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-----
Confidence 55566677788888888888888888888887664 777888999999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
.|..+.++.++|.+|+.+|..+-|+..|++++++ .|....++++||..+...|+..+|+.+|.+++.+
T Consensus 282 ---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l- 349 (966)
T KOG4626|consen 282 ---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL- 349 (966)
T ss_pred ---CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-
Confidence 3566889999999999999999999999999997 6888999999999999999999999999999996
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (519)
.|..+.++++||.+|..+|.+++|..+|.++++.. +..+.+.++||.+|.++|++++|+..|+
T Consensus 350 -------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~----------p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 350 -------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF----------PEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred -------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC----------hhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 36677899999999999999999999999999983 4457788999999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063 398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477 (519)
Q Consensus 398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 477 (519)
+++.+ .|..+.++.++|..|..+|+.+.|+.+|.+|+.+ +|..+++..+||.+|...|+..+|+
T Consensus 413 ealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 413 EALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHH
Confidence 99985 6888999999999999999999999999999984 6899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 010063 478 KLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLL 516 (519)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~ 516 (519)
..|++++.+. ||.|+. +.|+..++.-.-+
T Consensus 477 ~sY~~aLklk-----PDfpdA-----~cNllh~lq~vcd 505 (966)
T KOG4626|consen 477 QSYRTALKLK-----PDFPDA-----YCNLLHCLQIVCD 505 (966)
T ss_pred HHHHHHHccC-----CCCchh-----hhHHHHHHHHHhc
Confidence 9999999865 666655 6688777654433
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=1.6e-31 Score=248.75 Aligned_cols=308 Identities=23% Similarity=0.330 Sum_probs=285.6
Q ss_pred CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh-hhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063 155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV-DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (519)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (519)
+...|....+...++..|...|+|++|+..++.++++. +..+..++.+...+..+|.+|..++++.+|+..|++|+.+.
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 55678888888889999999999999999999998885 44567889999988889999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010063 234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (519)
Q Consensus 234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (519)
+..+|+++|.++.++.+||.+|...|++++|..++++|+++.++..+..++.+...+.+++.++..++++++|..+++++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHH
Q 010063 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR 393 (519)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (519)
++++....+++++.++..+.+||.+|..+|++++|.+++++++.+.++. .+..+..+...++++|..|.+.+++.+|.
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~--~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL--LGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc--ccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 9999999999999999999999999999999999999999999998874 45557777888899999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 010063 394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 465 (519)
Q Consensus 394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 465 (519)
.+|.++..+. +..|+++|++...+.+||.+|..+|++++|+++.+.++...+...+..++.....-..++.
T Consensus 430 ~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (508)
T KOG1840|consen 430 QLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLAD 500 (508)
T ss_pred HHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhH
Confidence 9999999999 8889999999999999999999999999999999999999999888887776554444433
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=1.3e-27 Score=239.86 Aligned_cols=338 Identities=15% Similarity=0.072 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
...+...|..++..|+|++|+..|++++.. .|. +..+.++|.+|..+|++++|+..+++++++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~----------~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----- 190 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIEC----------KPD-PVYYSNRAACHNALGDWEKVVEDTTAALELD----- 190 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----
Confidence 445778899999999999999999999886 333 4578899999999999999999999988764
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHH----------------------------------------------
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN---------------------------------------------- 231 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------------------------------- 231 (519)
|....++..+|.+|...|++++|+..+..+..
T Consensus 191 --p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 191 --PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 45556788899999999999988765533211
Q ss_pred -----------------------------------------------HHHHhcC--CCCHHHHHHHHHHHHHHhhcCCHH
Q 010063 232 -----------------------------------------------VLESRYG--KTSILLVTSLLGMAKVLGSIGRAK 262 (519)
Q Consensus 232 -----------------------------------------------~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~ 262 (519)
.++.... ...+....++..+|.++..+|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~ 348 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL 348 (615)
T ss_pred HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence 1111110 113455667888899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 010063 263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN 342 (519)
Q Consensus 263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 342 (519)
+|+..+++++++ .|....++..+|.++...|++++|+..+++++++ +|....++..+|.++...
T Consensus 349 eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 349 EALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc
Confidence 999999999876 5666788899999999999999999999999875 345566889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 010063 343 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 422 (519)
Q Consensus 343 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 422 (519)
|++++|+..|++++++ .|+. ...+.++|.++...|++++|+..+++++.. .|....++..+|
T Consensus 413 g~~~~A~~~~~kal~l-------~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg 474 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDL-------DPDF---IFSHIQLGVTQYKEGSIASSMATFRRCKKN--------FPEAPDVYNYYG 474 (615)
T ss_pred CCHHHHHHHHHHHHHc-------CccC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHHH
Confidence 9999999999999887 2333 345688999999999999999999999874 345567888999
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhH
Q 010063 423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLF 502 (519)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 502 (519)
.++...|++++|+..|++++.+.... .+.+......+...+..+...|++++|..++++++.+. +++ ..
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-----p~~-----~~ 543 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-----PEC-----DI 543 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCc-----HH
Confidence 99999999999999999999864221 01111222222222333444799999999999988752 222 23
Q ss_pred HHHHHHHHHHHhhhcc
Q 010063 503 CFVLFGLVWFCLLLYK 518 (519)
Q Consensus 503 ~~~~l~~~~~~lg~~k 518 (519)
++..+|.++..+|+++
T Consensus 544 a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 544 AVATMAQLLLQQGDVD 559 (615)
T ss_pred HHHHHHHHHHHccCHH
Confidence 4778899999988864
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=3.6e-26 Score=229.37 Aligned_cols=316 Identities=15% Similarity=0.133 Sum_probs=254.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhh--------
Q 010063 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI-------- 191 (519)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------- 191 (519)
...+.+.++...|++++|+..+++++++ .|....++..+|.+|..+|++++|+..+..+...
T Consensus 162 ~~~n~a~~~~~l~~~~~Ai~~~~~al~l----------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~ 231 (615)
T TIGR00990 162 YYSNRAACHNALGDWEKVVEDTTAALEL----------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS 231 (615)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH
Confidence 4778889999999999999999999998 7888899999999999999999997654332110
Q ss_pred --------------------------------------------------------------------------------
Q 010063 192 -------------------------------------------------------------------------------- 191 (519)
Q Consensus 192 -------------------------------------------------------------------------------- 191 (519)
T Consensus 232 ~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~ 311 (615)
T TIGR00990 232 AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE 311 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence
Q ss_pred -----hhh-c--CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHH
Q 010063 192 -----VDS-L--KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263 (519)
Q Consensus 192 -----~~~-~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 263 (519)
.+. + +...|..+.++..+|.++..+|++++|+..+++++.+ +|....++..+|.++...|++++
T Consensus 312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHH
Confidence 000 0 0113455566888899999999999999999999875 24456788899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 010063 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 343 (519)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 343 (519)
|+..++++++. .|....++..+|.++...|++++|+..|++++++ .|.....+.++|.++...|
T Consensus 384 A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 384 AEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCC
Confidence 99999999886 4556788999999999999999999999999985 4666678899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010063 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 423 (519)
Q Consensus 344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 423 (519)
++++|+..+++++... |+. ..++..+|.++...|++++|+..|++++.+..... .........+...+.
T Consensus 448 ~~~eA~~~~~~al~~~-------P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 448 SIASSMATFRRCKKNF-------PEA---PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALA 516 (615)
T ss_pred CHHHHHHHHHHHHHhC-------CCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHH
Confidence 9999999999999862 333 34568899999999999999999999998753321 111222222333334
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063 424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (519)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (519)
++...|++++|..++++++.+ +|....++..+|.++..+|++++|+.+|++++++.+
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 445579999999999999984 355556788999999999999999999999998865
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=3e-24 Score=214.64 Aligned_cols=323 Identities=12% Similarity=0.012 Sum_probs=209.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
+...+......|++++|+..++++++. .|..+.++..+|.++...|++++|+..+++++.+. |
T Consensus 79 l~~l~~~~l~~g~~~~A~~~l~~~l~~----------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-------P 141 (656)
T PRK15174 79 LRRWVISPLASSQPDAVLQVVNKLLAV----------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-------S 141 (656)
T ss_pred HHHHhhhHhhcCCHHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C
Confidence 445555556677777777777777776 66666677777777777777777777777776653 3
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
....++..+|.++...|++++|+..+++++... ++++. .+..++ .+...|++++|+..++++++..
T Consensus 142 ~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-----P~~~~---a~~~~~-~l~~~g~~~eA~~~~~~~l~~~----- 207 (656)
T PRK15174 142 GNSQIFALHLRTLVLMDKELQAISLARTQAQEV-----PPRGD---MIATCL-SFLNKSRLPEDHDLARALLPFF----- 207 (656)
T ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----CCCHH---HHHHHH-HHHHcCCHHHHHHHHHHHHhcC-----
Confidence 333446667777777777777777777655431 22222 222332 3666777777777777665541
Q ss_pred CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH----HHHHHHHHH
Q 010063 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE----AVELYKKAL 356 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al 356 (519)
.+........++.++...|++++|+..+++++.. +|....++.++|.++...|++++ |+..+++++
T Consensus 208 --~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 208 --ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred --CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 1111223345567777778888888888777763 34455667778888888888775 677777777
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010063 357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (519)
+. .|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.
T Consensus 278 ~l----------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 278 QF----------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred hh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 65 2344567777888888888888888888877764 34444566677888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhh
Q 010063 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLL 515 (519)
Q Consensus 437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg 515 (519)
.|++++.. +|........+|.++...|++++|+..|+++++...+. .......+...+...+...+
T Consensus 340 ~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~-----~~~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 340 EFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH-----LPQSFEEGLLALDGQISAVN 405 (656)
T ss_pred HHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh-----chhhHHHHHHHHHHHHHhcC
Confidence 88777762 23333445556777778888888888888887765332 22222345555555555444
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=6.8e-24 Score=212.05 Aligned_cols=321 Identities=11% Similarity=0.042 Sum_probs=259.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (519)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (519)
.+...+..+...|++++|..+++..+.. .|..+.++..+|.+....|++++|+..+++++...
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~----------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~------- 106 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLT----------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN------- 106 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHh----------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------
Confidence 3666778889999999999999999988 88888999999999999999999999999998775
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
|....++..+|.++...|++++|+..+++++.+. |....++..++.++...|++++|+..+++++..
T Consensus 107 P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----- 173 (656)
T PRK15174 107 VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--------SGNSQIFALHLRTLVLMDKELQAISLARTQAQE----- 173 (656)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----
Confidence 4445568899999999999999999999998862 333567788999999999999999999987765
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
.|.....+..++ .+...|++++|+..+++++... .+........++.++...|++++|+..+++++..
T Consensus 174 ---~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~- 241 (656)
T PRK15174 174 ---VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR- 241 (656)
T ss_pred ---CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 233334444443 4788999999999999887641 1122223456788899999999999999999986
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010063 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQE----GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (519)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (519)
.+++ ..++.++|.++...|++++ |+..+++++.+ .|....++..+|.++...|++++|+
T Consensus 242 ------~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 242 ------GLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred ------CCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3333 4566889999999999986 89999999874 3556688899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhh
Q 010063 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLL 515 (519)
Q Consensus 436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg 515 (519)
..+++++.+ +|+...++..+|.++...|++++|+..|+++++.. ++++ .....+|.++..+|
T Consensus 305 ~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-----P~~~-----~~~~~~a~al~~~G 366 (656)
T PRK15174 305 PLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-----GVTS-----KWNRYAAAALLQAG 366 (656)
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----ccch-----HHHHHHHHHHHHCC
Confidence 999999984 35556677889999999999999999999998742 2222 23556688888877
Q ss_pred hc
Q 010063 516 LY 517 (519)
Q Consensus 516 ~~ 517 (519)
++
T Consensus 367 ~~ 368 (656)
T PRK15174 367 KT 368 (656)
T ss_pred CH
Confidence 63
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=2.3e-23 Score=222.60 Aligned_cols=341 Identities=14% Similarity=0.069 Sum_probs=240.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH--
Q 010063 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL-- 201 (519)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-- 201 (519)
.+..+...|++++|+..++++++. .|..+.++..+|.++...|++++|+..|+++++...........
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRA----------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 366778899999999999999998 77778899999999999999999999999998765221110000
Q ss_pred -----HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063 202 -----LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (519)
Q Consensus 202 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (519)
.......+|..+...|++++|+..|++++... |....++..+|.++...|++++|+..|++++++..
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 11223456888999999999999999999862 23356788999999999999999999999997621
Q ss_pred HhcC----------CCCh------------------------hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063 277 LNRG----------TESA------------------------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 277 ~~~~----------~~~~------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (519)
.... ...+ .....+..+|.++...|++++|+..|++++++
T Consensus 417 ~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~------ 490 (1157)
T PRK11447 417 GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL------ 490 (1157)
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 1000 0000 00112345677788899999999999999985
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHH------------------------------
Q 010063 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM------------------------------ 372 (519)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~------------------------------ 372 (519)
.|....++..+|.+|...|++++|+..++++++... +++..
T Consensus 491 --~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-------~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~ 561 (1157)
T PRK11447 491 --DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-------NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWN 561 (1157)
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcC
Confidence 455566788999999999999999999999876421 11110
Q ss_pred -----------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 010063 373 -----------------------------------------ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 411 (519)
Q Consensus 373 -----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 411 (519)
...+..+|.++...|++++|+..|+++++. .
T Consensus 562 ~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~ 633 (1157)
T PRK11447 562 SNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--------E 633 (1157)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 113345666667777777777777776653 3
Q ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 010063 412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 491 (519)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 491 (519)
|....++..++.+|...|++++|+..+++++.. .|+...++..+|.++...|++++|..++++++....
T Consensus 634 P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~--- 702 (1157)
T PRK11447 634 PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK--- 702 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc---
Confidence 444556777777777777777777777766542 334445566777788888888888888887776431
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063 492 GKDSLPVGKLFCFVLFGLVWFCLLLY 517 (519)
Q Consensus 492 ~~~~~~~~~~~~~~~l~~~~~~lg~~ 517 (519)
++.+....+..+..+|.++...|++
T Consensus 703 -~~~~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 703 -SQPPSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred -cCCcchhhHHHHHHHHHHHHHcCCH
Confidence 1112112234455667777777765
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=1.5e-22 Score=215.87 Aligned_cols=260 Identities=19% Similarity=0.164 Sum_probs=136.9
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc-----
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR----- 279 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----- 279 (519)
.+..+|.++...|++++|+..|+++++.. |....++..+|.++...|++++|...++++++......
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQ--------PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 35555666666666666666666555431 11133445556666666666666666665554310000
Q ss_pred ---------------------CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 010063 280 ---------------------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338 (519)
Q Consensus 280 ---------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 338 (519)
....|.....+..+|.++...|++++|+..|++++... |.. ..+..++.+
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~-~~~~~l~~~ 745 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--------PSS-QNAIKLHRA 745 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------CCc-hHHHHHHHH
Confidence 00011122233333444444444444444444443320 111 233344444
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 010063 339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 418 (519)
Q Consensus 339 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 418 (519)
+...|++++|...++++++. .+++ ..++..+|.++...|++++|+..|+++++. .|....++
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~-------~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~ 807 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKT-------HPND---AVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVL 807 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 44444444444444444432 1222 234455666666666666666666666543 23334556
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcc
Q 010063 419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 498 (519)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 498 (519)
..+|.++...|+ .+|+.++++++.+ .|.....+..+|.++...|++++|..+++++++.. +..+
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-----~~~~-- 871 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKL--------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-----PEAA-- 871 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCh--
Confidence 666666666666 6666666666653 12333455677888888888888888888888743 2233
Q ss_pred hhhHHHHHHHHHHHHhhhcc
Q 010063 499 GKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 499 ~~~~~~~~l~~~~~~lg~~k 518 (519)
.++.+++.++...|++.
T Consensus 872 ---~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 872 ---AIRYHLALALLATGRKA 888 (899)
T ss_pred ---HHHHHHHHHHHHcCCHH
Confidence 34778888888888763
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=1.3e-22 Score=216.34 Aligned_cols=302 Identities=17% Similarity=0.190 Sum_probs=233.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (519)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (519)
...+..+...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++... |.
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~ 633 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADA----------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-------PD 633 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CC
Confidence 33445556666666666666666544 44556678888888988999999998888877653 22
Q ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHHH
Q 010063 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR--------------------------YGKTSILLVTSLLGMAKVL 255 (519)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~~~~~~~~~~~~~la~~~ 255 (519)
...++..+|.++...|++++|+..+++++...... .....|.....+..+|.++
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHH
Confidence 23457788888888888888888888877642110 0001122344566788888
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 010063 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 335 (519)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 335 (519)
...|++++|+..|++++... |.. ..+..++.++...|++++|...++++++. .|....++..+
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~--------~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~l 776 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRA--------PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT--------HPNDAVLRTAL 776 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhC--------CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 89999999999999888751 222 56778999999999999999999999874 35556788999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010063 336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415 (519)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 415 (519)
|.++...|++++|+..|+++++. .|++ ..++.+++.++...|+ .+|+.++++++... |...
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~-------~p~~---~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--------~~~~ 837 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKK-------APDN---AVVLNNLAWLYLELKD-PRALEYAEKALKLA--------PNIP 837 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--------CCCc
Confidence 99999999999999999999986 3333 3456889999999999 88999999998752 2334
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (519)
..+..+|.++...|++++|..+++++++. .|....++..++.++...|++++|...+++++
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56778999999999999999999999983 24456778899999999999999999999886
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=6.6e-22 Score=189.01 Aligned_cols=314 Identities=16% Similarity=0.128 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (519)
..+...+..+..+...|++++|+..++++++. .|....++..+|.++...|++++|...++.++...
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--- 99 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV----------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP--- 99 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhc----------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC---
Confidence 34444666777888999999999999999987 67778899999999999999999999999877632
Q ss_pred CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (519)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (519)
.........++..+|.+|...|++++|+..|+++++. .+....++..++.++...|++++|++.++++++..
T Consensus 100 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 100 DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 1122334456889999999999999999999998764 23345678899999999999999999999987652
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010063 276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (519)
Q Consensus 276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (519)
.. +........+..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..++++
T Consensus 172 ~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 172 GD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred CC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 111223456778999999999999999999999885 2445567888999999999999999999999
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010063 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (519)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (519)
+... + .....++..++.+|...|++++|...+++++... |+. ..+..++.++...|++++|.
T Consensus 241 ~~~~-------p--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------p~~-~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 241 EEQD-------P--EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--------PGA-DLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHHC-------h--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCc-hHHHHHHHHHHHhCCHHHHH
Confidence 8751 2 2223456789999999999999999999988752 222 23478999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH--hcCChHHHHHHHHHHHHHH
Q 010063 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLY--HLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~ 487 (519)
..+++++.. .|+.......++..+. ..|+..+|+..+++.++..
T Consensus 303 ~~l~~~l~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 303 ALLREQLRR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 999999884 3444433222333222 2568999999999988643
No 13
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.93 E-value=3.5e-23 Score=179.71 Aligned_cols=328 Identities=16% Similarity=0.108 Sum_probs=266.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010063 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 247 (519)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 247 (519)
-|.-+++.|++...+.+|+.+++.- .++-..+..+|..||+.|+..++|.+|+++...-+.+.+... +....+.+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvG---TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg--dklGEAKs 97 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVG---TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG--DKLGEAKS 97 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhc---chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc--chhccccc
Confidence 4667889999999999999999875 344456677899999999999999999999887777665542 23344677
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC--------------------HHHHH
Q 010063 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK--------------------AVDAE 307 (519)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~ 307 (519)
..++|..+...|.|++|+.+..+-+.+.++.. +......+++++|.+|...|+ ++.|.
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 78999999999999999999999999988875 445567899999999998876 35566
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC
Q 010063 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387 (519)
Q Consensus 308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (519)
++|..-+++.+... +......++.+||..|+-.|+|+.|+..-+.-+.+.++- .+....-.++.++|.++.-.|
T Consensus 176 ~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef----GDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 176 KFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF----GDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----hhHHHHHHhhcccchhhhhhc
Confidence 67777777666552 233456789999999999999999999999999988873 344455678899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 010063 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467 (519)
Q Consensus 388 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 467 (519)
+++.|+++|+..+.+..++. +....+...+.||..|.-..++++|+.|+.+-+.|.++. .+......+++.||..+
T Consensus 250 ~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGNAF 325 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHH
Confidence 99999999999999988874 445567788999999999999999999999999999887 34456678899999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 010063 468 YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLL 516 (519)
Q Consensus 468 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~ 516 (519)
...|..++|+.+.++.+++..++-++... .....||...-..+|.
T Consensus 326 ~alg~h~kAl~fae~hl~~s~ev~D~sge----lTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 326 NALGEHRKALYFAELHLRSSLEVNDTSGE----LTARDNLSDLILELGQ 370 (639)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCCcchh----hhhhhhhHHHHHHhCC
Confidence 99999999999999999999877443322 2334466655555553
No 14
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.92 E-value=2.6e-22 Score=174.35 Aligned_cols=331 Identities=15% Similarity=0.145 Sum_probs=261.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG-IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (519)
+-..+..+++.|++...+.+|+.|++. +..+ .....+|..+|.+|+.+++|++|.++...=+.+.+.+++.
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qv-------GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk- 91 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQV-------GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK- 91 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHh-------cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch-
Confidence 555778899999999999999999998 3333 3345578899999999999999999886655554444332
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC-------------------
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR------------------- 260 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------- 260 (519)
..-+.+--+||+.+...|.|++|+.+..+-+.+.++. .+......+++++|.+|...|+
T Consensus 92 lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~ 169 (639)
T KOG1130|consen 92 LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS 169 (639)
T ss_pred hccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence 2334456789999999999999999999999998876 2345668899999999998875
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010063 261 -AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK 339 (519)
Q Consensus 261 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 339 (519)
++.|.++|..-+++.++.. +......++.+||..|+-.|+|+.|+...+.-+.+.++.. +....-.++.++|.++
T Consensus 170 al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCH 245 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhh
Confidence 3456666666666665543 3344567899999999999999999999999999988763 3344566899999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHH
Q 010063 340 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 419 (519)
Q Consensus 340 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 419 (519)
...|+++.|+++|+..+.+..+. .+...-+...+.||..|.-..++++|+.++.+-+.|.++.. +......+++
T Consensus 246 iflg~fe~A~ehYK~tl~LAiel----g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~Racw 319 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLTLNLAIEL----GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACW 319 (639)
T ss_pred hhhcccHhHHHHHHHHHHHHHHh----cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHH
Confidence 99999999999999999988874 33444456678999999999999999999999999998873 4556678899
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCCh
Q 010063 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD 473 (519)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 473 (519)
.||..+...|..++|+.+.++.+++..++.++. ....+..+|...-...|..
T Consensus 320 SLgna~~alg~h~kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 320 SLGNAFNALGEHRKALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCC
Confidence 999999999999999999999999988874332 2333445665555555543
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.3e-21 Score=209.26 Aligned_cols=313 Identities=10% Similarity=0.048 Sum_probs=239.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (519)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (519)
+..+..+...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..|+++++... +.+.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p----~~~~ 420 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQV----------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP----GNTN 420 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHH
Confidence 45567788999999999999999998 667778899999999999999999999999987642 1111
Q ss_pred H---------------------------------------HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH
Q 010063 202 L---------------------------------------DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI 242 (519)
Q Consensus 202 ~---------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 242 (519)
. ...+..+|..+...|++++|+..|+++++.. |
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--------P 492 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--------P 492 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C
Confidence 0 1123346777888899999999999998762 3
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------
Q 010063 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI------ 316 (519)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 316 (519)
....++..+|.+|...|++++|+..++++++. .|.....+..++..+...|++++|+..++++...
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 33557789999999999999999999999875 3444555666677777777777777766543110
Q ss_pred ---------------H------------HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063 317 ---------------Y------------TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369 (519)
Q Consensus 317 ---------------~------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (519)
. ...+. .+|.....+..+|.++...|++++|+..|+++++. .|++
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-------~P~~ 636 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLR-QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-------EPGN 636 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Confidence 0 00000 12334456788999999999999999999999987 3444
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc
Q 010063 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449 (519)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (519)
..++..++.++...|++++|++.+++++.. .|....++..+|.++...|++++|..++++++......
T Consensus 637 ---~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~- 704 (1157)
T PRK11447 637 ---ADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ- 704 (1157)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC-
Confidence 346689999999999999999999987653 34445677889999999999999999999998743111
Q ss_pred CCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
+........+..+|.++...|++++|+.+|++++.
T Consensus 705 -~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 705 -PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred -CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11112345667789999999999999999999985
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.3e-20 Score=180.82 Aligned_cols=252 Identities=18% Similarity=0.162 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
|....++..+|.++.. ++...++..|..|+.+....... .-...++++|..++..|++++|...|.+|+..+....
T Consensus 411 ~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 3445677777777765 44555599999999888776533 4467899999999999999999999999999865443
Q ss_pred CCCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063 322 GEND--GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (519)
Q Consensus 322 ~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (519)
..+. .......+|+|.++...++++.|.+.|...+.. +|.+..++..+|......++..+|...+..+
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke----------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE----------HPGYIDAYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----------CchhHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence 2222 122446789999999999999999999998775 5556677777887777778888888888877
Q ss_pred HHHHHHh------hC----------------------CCChhHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHH
Q 010063 400 LLITEKY------KG----------------------KEHPSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMT 446 (519)
Q Consensus 400 l~~~~~~------~~----------------------~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~ 446 (519)
+.+.... +| ......+.++..||.++.+. .+.+++...+.+|++++.
T Consensus 557 l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~ 636 (1018)
T KOG2002|consen 557 LNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYG 636 (1018)
T ss_pred HhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 6542111 11 00011234566677766542 334566667777777766
Q ss_pred HhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
+++. .+|..+.+-+.+|.++...|++.+|...|.++.+... +.+++ |.|||.||..+|+|.
T Consensus 637 kvL~-~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~~dv-----~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 637 KVLR-NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DFEDV-----WLNLAHCYVEQGQYR 697 (1018)
T ss_pred HHHh-cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hCCce-----eeeHHHHHHHHHHHH
Confidence 6553 4577777888999999999999999999998887653 33445 789999999998885
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.6e-20 Score=179.43 Aligned_cols=277 Identities=18% Similarity=0.141 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (519)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (519)
....+..|..+...|++++|+..+++++... |....++..+|.++...|++++|+..+++++... ....
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~ 103 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTR 103 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCH
Confidence 3445667888999999999999999998763 4445668899999999999999999999887621 1112
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
.....++..+|.+|...|++++|+..|+++++. .+....++..++.++...|++++|+..++++++....
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-- 173 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-- 173 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC--
Confidence 234567889999999999999999999999864 3445678899999999999999999999998874211
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (519)
+........+..+|.++...|++++|+.+++++++.. ++. ...+..+|.++...|++++|++.+++++.
T Consensus 174 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 174 -SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-------PQC---VRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred -cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-------cCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111244467789999999999999999999998862 222 34567899999999999999999999886
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHH
Q 010063 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (519)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (519)
.. ......++..++.+|...|++++|...+++++.. +|+.. .+..++.++...|++++|...++
T Consensus 243 ~~-------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 243 QD-------PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HC-------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHH
Confidence 41 1223456788999999999999999999998874 22222 34789999999999999999999
Q ss_pred HHHHH
Q 010063 482 EALYI 486 (519)
Q Consensus 482 ~a~~~ 486 (519)
++++.
T Consensus 307 ~~l~~ 311 (389)
T PRK11788 307 EQLRR 311 (389)
T ss_pred HHHHh
Confidence 99875
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8.8e-22 Score=181.86 Aligned_cols=295 Identities=15% Similarity=0.114 Sum_probs=233.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA 204 (519)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 204 (519)
+......-+..+|+..|++.-.. ......++..+|.+|+.+++|++|+.+|+.+.+.. |....
T Consensus 326 ~~~~~s~y~~~~A~~~~~klp~h----------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~-------p~rv~ 388 (638)
T KOG1126|consen 326 GYRSLSQYNCREALNLFEKLPSH----------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE-------PYRVK 388 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHh----------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------ccccc
Confidence 33445556677888888872222 55666889999999999999999999999987664 32222
Q ss_pred HHHHHHHHHHccccHHHHHHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQR-VINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (519)
-.-....+++...+-- ++.++-+ .++ .++....+|..+|.||..+++++.|++.|++|+++ +
T Consensus 389 ~meiyST~LWHLq~~v-~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------d 451 (638)
T KOG1126|consen 389 GMEIYSTTLWHLQDEV-ALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------D 451 (638)
T ss_pred chhHHHHHHHHHHhhH-HHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------C
Confidence 2223334444443322 2222222 222 23445678889999999999999999999999997 6
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
|..+.+|..+|.-+.....+|.|..+|++|+.+ +|..-.+|+.+|.+|.++++++.|+-+|++|+++
T Consensus 452 p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I----- 518 (638)
T KOG1126|consen 452 PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI----- 518 (638)
T ss_pred CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC-----
Confidence 778899999999999999999999999999985 5777789999999999999999999999999998
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
.|.. ..+...+|.++.+.|+.++|+.++++|+.+ +|...-..+..|.++...+++++|+..+++..+
T Consensus 519 --NP~n---svi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 519 --NPSN---SVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred --Cccc---hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 2323 334577999999999999999999999875 344445677889999999999999999998877
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
+ .|+...++..+|.+|.+.|+.+.|+..|--|.++-
T Consensus 586 ~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 586 L--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred h--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 4 47778889999999999999999999999998754
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.6e-20 Score=176.49 Aligned_cols=326 Identities=18% Similarity=0.207 Sum_probs=260.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHH
Q 010063 132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGS 211 (519)
Q Consensus 132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (519)
..+..++..+.++... .+..+.++..++.-|+..|+|+.+..+...++... ...+..+..++.+|.
T Consensus 250 ~s~~~~~~ll~~ay~~----------n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t----~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKE----------NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT----ENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHHHHHHhh----------cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHH
Confidence 3466667777666665 67778899999999999999999999998887764 445677888999999
Q ss_pred HHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 010063 212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF 291 (519)
Q Consensus 212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 291 (519)
+|..+|+|++|..+|.+++... ++ ...-.+..+|..|...|+++.|...|++++.. .|....++.
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~-----~d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~ 380 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKAD-----ND--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMK 380 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccC-----CC--CccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHH
Confidence 9999999999999999998752 22 23566889999999999999999999999886 566678888
Q ss_pred HHHHHHHhCC----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010063 292 SLGSLFIKEG----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367 (519)
Q Consensus 292 ~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (519)
.||.+|...+ ..+.|..+..++++. .|....+|..++.++....-+ .++.+|..|+.+..... .+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~--~~ 449 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKG--KQ 449 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcC--CC
Confidence 8999998876 456677777777663 367778999999998765555 45999999998887641 22
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
-+ ...++++|..++..|++.+|...+.+|+.........+. .......+++|.++...++++.|.+.|...+.
T Consensus 450 ip---~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk-- 524 (1018)
T KOG2002|consen 450 IP---PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK-- 524 (1018)
T ss_pred CC---HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--
Confidence 22 346699999999999999999999999998553322222 12245689999999999999999999999987
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
.||..+.++..+|.+....++..+|..+++.++.+. ..+|.+ +..+|..|....+++
T Consensus 525 ------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-----~~np~a-----rsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 525 ------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-----SSNPNA-----RSLLGNLHLKKSEWK 581 (1018)
T ss_pred ------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-----cCCcHH-----HHHHHHHHHhhhhhc
Confidence 589999999999988888999999999999999854 445544 556787777766654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=5.8e-20 Score=187.96 Aligned_cols=339 Identities=11% Similarity=0.004 Sum_probs=249.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
+...+..+...|++++|+..++++++. .|..+.++..++.++...|++++|+..+++++... |
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-------P 114 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSL----------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-------P 114 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------C
Confidence 666788899999999999999999988 67777788899999999999999999999988764 3
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHH----------
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR---------- 270 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------- 270 (519)
.... +..+|.++...|++++|+..++++++.. |....++..++.++...|..++|+..+++
T Consensus 115 ~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~ 185 (765)
T PRK10049 115 DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--------PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD 185 (765)
T ss_pred CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence 3344 7789999999999999999999999862 22344555678888777887777755552
Q ss_pred -----------------------------HHHHHHHhcC--CCC----hhhHHHHHH-HHHHHHhCCCHHHHHHHHHHHH
Q 010063 271 -----------------------------VITILELNRG--TES----ADLVLPLFS-LGSLFIKEGKAVDAESVFSRIL 314 (519)
Q Consensus 271 -----------------------------al~~~~~~~~--~~~----~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al 314 (519)
+++.++.... +.. +....+... ++. +...|++++|+..|++++
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~-Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA-LLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH-HHHhhhHHHHHHHHHHhh
Confidence 2221111110 111 222223332 443 457799999999999987
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHHHHHHHcCChHHHH
Q 010063 315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGRGQEGR 393 (519)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 393 (519)
+. ++..|..+.. .+|.+|...|++++|+..|+++++. .+.. .........++.++...|++++|+
T Consensus 265 ~~-----~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~-------~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 265 AE-----GQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYH-------PETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred cc-----CCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhc-------CCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 64 1223444433 3688999999999999999998764 1222 111234466788889999999999
Q ss_pred HHHHHHHHHHHHh---h--CCCCh--hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 010063 394 ELLEECLLITEKY---K--GKEHP--SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT 466 (519)
Q Consensus 394 ~~~~~al~~~~~~---~--~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 466 (519)
..++++....... . ....| ....++..+|.++...|++++|++.+++++.. .|.....+..+|.+
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l 402 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASV 402 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 9999887642110 0 00112 23467788999999999999999999999873 45566788999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 467 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 467 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
+...|++++|+..+++++++. |+++. .+..+|.++..+|+++
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~-----Pd~~~-----l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLE-----PRNIN-----LEVEQAWTALDLQEWR 444 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhC-----CCChH-----HHHHHHHHHHHhCCHH
Confidence 999999999999999999864 44443 3677888888888764
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.7e-20 Score=166.72 Aligned_cols=329 Identities=14% Similarity=0.096 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (519)
.....+-+.|..+++.|+|++||++|.+|+++ .|..+..+.+++-+|...|+|++.++...+++++.
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l----------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--- 179 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL----------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--- 179 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc----------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence 44555778899999999999999999999998 66668889999999999999999999999998876
Q ss_pred CCCchHHHHHHHHHHHHHHccccHHHHHHHH------------------HHHHHH-----HHHhcC--------------
Q 010063 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVY------------------QRVINV-----LESRYG-------------- 238 (519)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------------------~~al~~-----~~~~~~-------------- 238 (519)
|....+++..+..+...|++++|+.-. ++.+.. ..+.++
T Consensus 180 ----P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~ 255 (606)
T KOG0547|consen 180 ----PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA 255 (606)
T ss_pred ----cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence 888888999999999999998886532 122211 000000
Q ss_pred --------------------------------------------------------------CCC--HHHHHHHHHHHHH
Q 010063 239 --------------------------------------------------------------KTS--ILLVTSLLGMAKV 254 (519)
Q Consensus 239 --------------------------------------------------------------~~~--~~~~~~~~~la~~ 254 (519)
.+. ...+.++...|..
T Consensus 256 syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 256 SYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred HHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 000 1235566667777
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhcC--------------------------CCChhhHHHHHHHHHHHHhCCCHHHHHH
Q 010063 255 LGSIGRAKKAVEIYHRVITILELNRG--------------------------TESADLVLPLFSLGSLFIKEGKAVDAES 308 (519)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~--------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 308 (519)
++-.|++..|...+..++.+...... .-+|....+|+..|.++.-.+++++|+.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 78888888888888888775221100 0123333444445555555555555555
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCC
Q 010063 309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 388 (519)
Q Consensus 309 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (519)
-|++++.+ +|..+.++..++...+++++++++...|+++...+.. . ..++...|.++..+++
T Consensus 416 DF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-------~---~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 416 DFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-------C---PEVYNLFAEILTDQQQ 477 (606)
T ss_pred HHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------C---chHHHHHHHHHhhHHh
Confidence 55555443 3444445555555555555555555555555444221 1 2233445555555555
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 010063 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467 (519)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 467 (519)
+++|++.|+.++.+.....+- +. .+..+...|.+.. -.+++..|+.++++|+++ +|.--.++..||.+.
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFE 547 (606)
T ss_pred HHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHH
Confidence 555555555555543221110 00 0111111122111 124555555555555552 455566788999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHH
Q 010063 468 YHLNRDKEAEKLVLEALYIREI 489 (519)
Q Consensus 468 ~~~g~~~~A~~~~~~a~~~~~~ 489 (519)
.++|+.++|+++|+++..+.+.
T Consensus 548 lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 548 LQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=9.2e-19 Score=179.18 Aligned_cols=340 Identities=11% Similarity=0.004 Sum_probs=248.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
+-+-.....-.|+.++|+..+.++... .+..+.++..+|.++...|++++|...+++++... |
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~----------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------P 80 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVH----------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------P 80 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C
Confidence 445556678899999999999888765 56667789999999999999999999999998774 3
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
....++..++.++...|++++|+..++++++.. |.... +..+|.++...|++++|+..++++++.
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~------ 145 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR------ 145 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 333456789999999999999999999998762 22244 778999999999999999999999997
Q ss_pred CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHH---------------------------------------HHHHHHHhc
Q 010063 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSR---------------------------------------ILKIYTKVY 321 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------------------------------------al~~~~~~~ 321 (519)
.|....++..++.++...|..++|+..+++ +++.++...
T Consensus 146 --~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 146 --APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred --CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 455667777888888888888877765552 222222211
Q ss_pred C--CCC----hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHH
Q 010063 322 G--END----GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL 395 (519)
Q Consensus 322 ~--~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 395 (519)
. +.+ +....+.......+...|++++|+..|+++++. ++..|.... ..+|.+|...|++++|+..
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-------~~~~P~~a~--~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-------GQIIPPWAQ--RWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-------CCCCCHHHH--HHHHHHHHhcCCcHHHHHH
Confidence 0 111 222233333223346779999999999997765 222232222 3368899999999999999
Q ss_pred HHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh---c--CCCCc--chhHHHHHHHHHH
Q 010063 396 LEECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT---V--GPDDQ--SISFPMLHLGITL 467 (519)
Q Consensus 396 ~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~--~~~~~--~~~~~~~~la~~~ 467 (519)
|++++... +.. +........++.++...|++++|+.+++++....... . ...+| ....++..++.++
T Consensus 295 l~~~l~~~-----p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 295 LTELFYHP-----ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHhhcC-----CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 99987531 111 1113456677888899999999999999988742100 0 00112 2345677899999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 468 YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 468 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
...|++++|+..+++++... |+++ ..+..+|.++...|+++
T Consensus 370 ~~~g~~~eA~~~l~~al~~~-----P~n~-----~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNA-----PGNQ-----GLRIDYASVLQARGWPR 410 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhC-----CCCH-----HHHHHHHHHHHhcCCHH
Confidence 99999999999999998754 4443 44889999999988764
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.7e-20 Score=173.39 Aligned_cols=292 Identities=18% Similarity=0.171 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHHHhc--CChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 160 EEVAILDIIALGYVYI--GDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 160 ~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
.....+..+|..|... -+..+|+..|++. ...++....++..+|..|+.+++|++|..+|+.+-+..
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~kl-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~---- 383 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEKL-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE---- 383 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 4455667777777554 3456777777662 23335556788999999999999999999999876542
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
|..+...-....+++...+--+--.+.+..++ .+|....+|..+|.+|..+++++.|++.|++|+.+
T Consensus 384 ----p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl- 450 (638)
T KOG1126|consen 384 ----PYRVKGMEIYSTTLWHLQDEVALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL- 450 (638)
T ss_pred ----cccccchhHHHHHHHHHHhhHHHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-
Confidence 22222222334444444332222222222222 35667789999999999999999999999999985
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (519)
+|..+.+|..+|.=+.....+|.|..+|++|+... +.-..+|+.+|.+|.++++++.|.-.|+
T Consensus 451 -------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~----------~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 451 -------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD----------PRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred -------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC----------chhhHHHHhhhhheeccchhhHHHHHHH
Confidence 67788899999999999999999999999999872 2235788999999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063 398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477 (519)
Q Consensus 398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 477 (519)
+|+++ .|........+|.++.+.|+.++|+.++++|+.+ +|...-..+..|.+++..+++++|+
T Consensus 514 kA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 514 KAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred hhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHH
Confidence 99985 5667778889999999999999999999999984 3444556789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 478 KLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
..+++..++. ++. +..+..||.+|..+|+.+
T Consensus 578 ~~LEeLk~~v-----P~e-----s~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 578 QELEELKELV-----PQE-----SSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHHHHHhC-----cch-----HHHHHHHHHHHHHHccch
Confidence 9999988765 222 345889999999999865
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=7.8e-19 Score=179.81 Aligned_cols=304 Identities=10% Similarity=0.008 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCC---hHHHHH------------
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD---LKFVQS------------ 183 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~------------ 183 (519)
..+...+......|++++|..+++++... ..+..-.......++.+|...+. ..++..
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPF-------QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCC-------CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 33556667779999999999999998864 11011122234467777766655 333322
Q ss_pred ----------HHHHHHhhhhhcCCCchH--HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010063 184 ----------LLDMMSGIVDSLKDDEPL--LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM 251 (519)
Q Consensus 184 ----------~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 251 (519)
.++.+.... +..|. ...+++++|.++.. |++.+|+..+.+++... ++. .....+
T Consensus 450 ~~~~~~~~~~~~~~~~~al----~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-----Pd~----~~~L~l 515 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLL----GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-----PDA----WQHRAV 515 (987)
T ss_pred HHhhhhhhhhhHHHHHHhc----ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-----Cch----HHHHHH
Confidence 222222222 23234 56679999999987 89999999999988653 221 235567
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 010063 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 331 (519)
Q Consensus 252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 331 (519)
|.++...|++++|+..+++++.. .+. ...+..+|.++...|++++|+.+++++++. .|.....
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l 578 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNAL 578 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHH
Confidence 78888999999999999987543 111 234678899999999999999999999874 2444445
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC
Q 010063 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 411 (519)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 411 (519)
...++......|++++|+..++++++. .|+ ...+.++|.++.+.|++++|+..+++++.+ .
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l-------~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~ 639 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLNI-------APS----ANAYVARATIYRQRHNVPAAVSDLRAALEL--------E 639 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------C
Confidence 556666677789999999999999987 332 356789999999999999999999999985 4
Q ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
|....++.++|.++...|++++|+..|++++++ +|....++.++|.++...|++++|+.++++++++.
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 666688999999999999999999999999984 46667889999999999999999999999999865
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=8e-19 Score=179.72 Aligned_cols=269 Identities=15% Similarity=0.027 Sum_probs=220.3
Q ss_pred ChH--HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH
Q 010063 158 GIE--EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES 235 (519)
Q Consensus 158 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 235 (519)
.|. .+.++..+|.++.. |++++|+..+.++.... ++ .. ....+|..+...|++++|+..++++...
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~----Pd---~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~--- 538 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ----PD---AW-QHRAVAYQAYQVEDYATALAAWQKISLH--- 538 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC----Cc---hH-HHHHHHHHHHHCCCHHHHHHHHHHHhcc---
Confidence 455 78899999999987 89999999998887654 22 11 2556777778999999999999986442
Q ss_pred hcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010063 236 RYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315 (519)
Q Consensus 236 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (519)
.+. ...+..+|.++...|++++|+.+++++++. .|.....+..++......|++++|+..++++++
T Consensus 539 --~p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~ 604 (987)
T PRK09782 539 --DMS----NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN 604 (987)
T ss_pred --CCC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 112 123568899999999999999999999875 244445555667777778999999999999998
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHH
Q 010063 316 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL 395 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 395 (519)
+ .|. ...+.++|.++.+.|++++|+..+++++.. .|+++ .++.++|.++...|++++|+..
T Consensus 605 l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-------~Pd~~---~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 605 I--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-------EPNNS---NYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred h--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHHHCCCHHHHHHH
Confidence 5 344 668899999999999999999999999987 34443 4678999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHH
Q 010063 396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 475 (519)
Q Consensus 396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 475 (519)
+++++++ .|....++.++|.++...|++++|+..|++++++ .|+...+....|.+.....+++.
T Consensus 666 l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--------~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 666 LERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--------IDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCchhhhhhhHHHHHHHHHHH
Confidence 9999985 4566788999999999999999999999999984 46667777788888888888888
Q ss_pred HHHHHHHHHHHH
Q 010063 476 AEKLVLEALYIR 487 (519)
Q Consensus 476 A~~~~~~a~~~~ 487 (519)
|.+.+.++..+.
T Consensus 730 a~~~~~r~~~~~ 741 (987)
T PRK09782 730 LHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHhhcC
Confidence 888888876643
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.3e-18 Score=152.33 Aligned_cols=278 Identities=17% Similarity=0.136 Sum_probs=219.1
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
-+.....-...|.+.....|+++|+..|+...+.. |....-+....++++-..+-.+---+.+.+..+
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-------PYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i----- 325 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-------PYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI----- 325 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------CCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh-----
Confidence 34445556677888899999999999998876532 322222334444544444332222222333332
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
+.....+...+|+.|...++.++|+.+|++|+++ +|....++..+|.-|.++.+...|+..|++|+++
T Consensus 326 ---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi- 393 (559)
T KOG1155|consen 326 ---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI- 393 (559)
T ss_pred ---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-
Confidence 1222445667899999999999999999999998 6778899999999999999999999999999997
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (519)
.|..-.+|+.||+.|.-++-+.=|+-+|++|+.. .|.++. ++..||.||.+.++.++|+.+|.
T Consensus 394 -------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-------kPnDsR---lw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 394 -------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-------KPNDSR---LWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred -------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-------CCCchH---HHHHHHHHHHHhccHHHHHHHHH
Confidence 4667789999999999999999999999999987 455544 45779999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063 398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477 (519)
Q Consensus 398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 477 (519)
+++.... ....++..||.+|.+.++..+|..+|++.++.. ...|...+.+..+...|+..+.+.+++++|.
T Consensus 457 rai~~~d--------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 457 RAILLGD--------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHhccc--------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 9987531 134688999999999999999999999999976 3345667778888888999999999999999
Q ss_pred HHHHHHHH
Q 010063 478 KLVLEALY 485 (519)
Q Consensus 478 ~~~~~a~~ 485 (519)
.+..+++.
T Consensus 528 ~Ya~~~~~ 535 (559)
T KOG1155|consen 528 YYATLVLK 535 (559)
T ss_pred HHHHHHhc
Confidence 98887765
No 27
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-18 Score=158.16 Aligned_cols=279 Identities=16% Similarity=0.194 Sum_probs=229.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH-HHHHHHHhcCChHHHHHHHHHHHhh
Q 010063 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILD-IIALGYVYIGDLKFVQSLLDMMSGI 191 (519)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 191 (519)
......+.+...+..++..+++.+..+..+..++. .|-+..++- .+| ++...|+..+-..+-.+..
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----------dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV-- 305 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----------DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLV-- 305 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----------CCCCcchHHHHHH-HHHHhcccchHHHHHHHHH--
Confidence 33455666888999999999999999999999887 444444443 444 8888887665444333333
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010063 192 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 271 (519)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 271 (519)
+..|..+..|+.+|..|...|++.+|.++|.++..+ ++..+.+|...|..+...|+.++|+..|..|
T Consensus 306 -----~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tA 372 (611)
T KOG1173|consen 306 -----DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA 372 (611)
T ss_pred -----HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence 344777777999999999999999999999999776 3555778889999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 010063 272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL 351 (519)
Q Consensus 272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 351 (519)
-++.... ......+|.-|..+++++-|..+|.+|+.++ |.....++.+|.+.+..+.|.+|..+
T Consensus 373 arl~~G~--------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 373 ARLMPGC--------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKY 436 (611)
T ss_pred HHhccCC--------cchHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHH
Confidence 9885432 2344568999999999999999999999974 55556788999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCH
Q 010063 352 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 431 (519)
Q Consensus 352 ~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 431 (519)
|+.++...+.. .+..+.+..++.+||.++.+.+.+++|+.++++++.. .|..+.++..+|.+|..+|++
T Consensus 437 f~~~l~~ik~~---~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 437 FQKALEVIKSV---LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred HHHHHHHhhhc---cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcCh
Confidence 99999777664 3444456677899999999999999999999999985 455567889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 010063 432 VEAERLLRICLDI 444 (519)
Q Consensus 432 ~~A~~~~~~al~~ 444 (519)
+.|+++|.+++.+
T Consensus 506 d~Aid~fhKaL~l 518 (611)
T KOG1173|consen 506 DKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999985
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.5e-18 Score=152.08 Aligned_cols=268 Identities=16% Similarity=0.168 Sum_probs=214.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (519)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
.|...+...|+++|+..|+..... +|-...-+....++++...+-.+-.-+.+.+..+. ....
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~kn----------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id-------KyR~ 330 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRKN----------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID-------KYRP 330 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhc----------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc-------cCCc
Confidence 345667888999999999987765 44444444444555555444333222223333332 1122
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (519)
.....+|+.|.-.++.++|+.+|++|+++ +|....++..+|.=|..+.+...|++.|++|+++ .
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~ 394 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------N 394 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------C
Confidence 23667899999999999999999999997 3566888999999999999999999999999998 5
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
|....+|+.||+.|.-++-+.=|+-+|++|... .|.....|..||.+|.+.++.++|+.+|.+++....
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--- 463 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD--- 463 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc---
Confidence 667899999999999999999999999999985 466667889999999999999999999999998622
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
. -..++..||.+|.+.++.++|..+|++.++.. ...|...+.+..+..-|+..+.+.+++++|..+..+++.
T Consensus 464 -----t--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 -----T--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred -----c--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 1 14567899999999999999999999999976 334556777788888899999999999999998887766
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=2.6e-17 Score=157.41 Aligned_cols=322 Identities=14% Similarity=0.121 Sum_probs=230.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh
Q 010063 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (519)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (519)
...++++.++..|..++..|++++|..++.+++.. .|..+.++..+|.+|..+|+.+++....-.|..+.
T Consensus 134 ~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~ 203 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQ----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN 203 (895)
T ss_pred ccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 34467888999999999999999999999999988 88899999999999999999999998887766554
Q ss_pred hhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (519)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (519)
+.++ ..|..++....++|++.+|.-+|.+|++.. |.........+.+|.+.|+...|...|.+++
T Consensus 204 ----p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~ 268 (895)
T KOG2076|consen 204 ----PKDY---ELWKRLADLSEQLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQKTGDLKRAMETFLQLL 268 (895)
T ss_pred ----CCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 3333 448899999999999999999999999862 3346677888999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 010063 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (519)
..... .+...........+..+...++-+.|.+.++.++..... ......++.++.++.....++.|....
T Consensus 269 ~~~p~---~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~------~~~~ed~ni~ael~l~~~q~d~~~~~i 339 (895)
T KOG2076|consen 269 QLDPP---VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD------EASLEDLNILAELFLKNKQSDKALMKI 339 (895)
T ss_pred hhCCc---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc------cccccHHHHHHHHHHHhHHHHHhhHHH
Confidence 87320 011222334455677888888889999999998883322 222334566788888888888888776
Q ss_pred HHHHH----------------------HHHhhccC--------------------------------CCCchHHHHHHHH
Q 010063 353 KKALR----------------------VIKDSNYM--------------------------------SLDDSIMENMRID 378 (519)
Q Consensus 353 ~~al~----------------------~~~~~~~~--------------------------------~~~~~~~~~~~~~ 378 (519)
..... ........ ..........+..
T Consensus 340 ~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d 419 (895)
T KOG2076|consen 340 VDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD 419 (895)
T ss_pred HHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH
Confidence 65443 00000000 0001222344566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhH
Q 010063 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458 (519)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 458 (519)
++.+|...|++.+|+.++...... ........|..+|.||..+|.+++|++.|++++.. .|+..+
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D 484 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLD 484 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchh
Confidence 777777777777777777665431 12223556777777777777777777777777762 355566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 010063 459 PMLHLGITLYHLNRDKEAEKLVLEA 483 (519)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a 483 (519)
+...|+.++..+|++++|.+.+.+.
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 6677777777777777665555443
No 30
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.82 E-value=2.4e-16 Score=162.93 Aligned_cols=305 Identities=13% Similarity=0.056 Sum_probs=178.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (519)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (519)
.....+...|++++|..+++++.+. + ......++..+...|...|+.++|.++++++.... -.|+.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~-------G--l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v~Pdv 507 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEA-------G--LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----VEANV 507 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CCCCH
Confidence 3445667778888888888776653 1 22335567777788888888888888887765431 11332
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
..|..+...|.+.|++++|+..|.++.... ..++ ..++..+...|...|++++|.+++.++...... -
T Consensus 508 -vTynaLI~gy~k~G~~eeAl~lf~~M~~~G---v~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g----i 575 (1060)
T PLN03218 508 -HTFGALIDGCARAGQVAKAFGAYGIMRSKN---VKPD----RVVFNALISACGQSGAVDRAFDVLAEMKAETHP----I 575 (1060)
T ss_pred -HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC----C
Confidence 237777778888888888888877664421 1122 446677777777777777777777776542100 0
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
.| ...+++.+...|.+.|++++|.++|+++.+. +.+....+|+.+...|.+.|++++|..+|+++.+.
T Consensus 576 ~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~---- 643 (1060)
T PLN03218 576 DP-DHITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK---- 643 (1060)
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Confidence 12 2456666777777777777777777766542 11223345666666777777777777776665543
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (519)
...++ ..++..+...+.+.|++++|.++++++.+. .......++..+...|.+.|++++|.++|+++.
T Consensus 644 -Gv~PD----~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 644 -GVKPD----EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred -CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 11121 124455666666666666666666655431 111122355556666666666666666665544
Q ss_pred HHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010063 443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484 (519)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (519)
.. .-.|+ ..+|..+...|.+.|++++|.++|++..
T Consensus 712 ~~------g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 712 SI------KLRPT-VSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred Hc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 31 11122 2345555666666666666666665543
No 31
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.82 E-value=3e-16 Score=166.47 Aligned_cols=435 Identities=13% Similarity=0.064 Sum_probs=294.8
Q ss_pred ccccccccccccccchhhHHHHhhhcccccCCCCCcchhhhhhhccCCC----CchhhhhhhhhhhhhhccccCcchHHH
Q 010063 41 LQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFS----APNDFARSKTLHDHSSNLWDGMNDFER 116 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~ 116 (519)
+...+...+.|+..++.+-++....+.+..+..+...+.........|. ....|.+++.++..+....-......
T Consensus 260 ~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~- 338 (903)
T PRK04841 260 LDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQ- 338 (903)
T ss_pred HhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCch-
Confidence 4566677777777777777777777777677666655555554332222 11236667777655542211111111
Q ss_pred HHHHHH-HHHHHHHHcCChhHHHHHHHHHH------HH----------------HHHHHhcCC--CChHHHHHHHHHHHH
Q 010063 117 QLLELF-NEVKSMIMMGNKNDAIDLLQANY------EA----------------VKEQINAGN--KGIEEVAILDIIALG 171 (519)
Q Consensus 117 ~~~~l~-~~~~~~~~~g~~~~A~~~~~~al------~~----------------~~~~~~~~~--~~~~~~~~~~~l~~~ 171 (519)
....+. ..+..+...|++.+|+..+..+- .. ........+ .....+......+.+
T Consensus 339 ~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 339 ELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 122233 33455666777776666554320 00 000000000 000112234556777
Q ss_pred HHhcCChHHHHHHHHHHHhhhhhcC-C-CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010063 172 YVYIGDLKFVQSLLDMMSGIVDSLK-D-DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249 (519)
Q Consensus 172 ~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 249 (519)
+...|++++|...+..+.......+ . +......+...++.++...|++++|..++++++.... ..+......+..
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~~ 495 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYYSRIVATS 495 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHHHHHHHHH
Confidence 8889999999999988776543321 1 1122344455678899999999999999999987521 112223455677
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (519)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (519)
.+|.++...|++++|...+++++....... .......++.++|.++...|++++|..++++++.+.....+...+...
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHD--VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 899999999999999999999999877643 223345677899999999999999999999999998876443334444
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC-
Q 010063 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG- 408 (519)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 408 (519)
..+..+|.++...|++++|...+++++...... + +......+..++.++...|++++|...++++..+......
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~---~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY---Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc---C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 556788999999999999999999999987642 2 2233456678999999999999999999988775432100
Q ss_pred -------------------C----------------C-ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 409 -------------------K----------------E-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452 (519)
Q Consensus 409 -------------------~----------------~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 452 (519)
. . ..........++.++...|++++|...+++++...+.. ..
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~--g~ 726 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL--RL 726 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--Cc
Confidence 0 0 00011124578889999999999999999999986654 23
Q ss_pred CcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (519)
Q Consensus 453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (519)
....+.++..+|.++...|+.++|...+.+++++..
T Consensus 727 ~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 727 MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 346677888999999999999999999999999874
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2.1e-18 Score=152.22 Aligned_cols=342 Identities=16% Similarity=0.127 Sum_probs=196.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA 204 (519)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 204 (519)
+..+++..+|.+|+.+|+.+++.+..+ .......++.++|..+.+.|.|+.|+..|+.+.+.. |....
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsi-----nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~~-------pn~~a 311 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSI-----NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA-------PNFIA 311 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhcccc-----chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC-------ccHHh
Confidence 344555667888888888888764332 245567788888888888999999988888766543 33332
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHH---------------------------------------------------H
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQRVINV---------------------------------------------------L 233 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------------------------------------------~ 233 (519)
-++|..+++..|+-++-.+.|++.+.+ .
T Consensus 312 -~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kii 390 (840)
T KOG2003|consen 312 -ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKII 390 (840)
T ss_pred -hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 234445555555555555555554433 0
Q ss_pred HHhcCCC----------------C-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--------------HHh-cCC
Q 010063 234 ESRYGKT----------------S-ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL--------------ELN-RGT 281 (519)
Q Consensus 234 ~~~~~~~----------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------~~~-~~~ 281 (519)
.....++ + +.....-.+.+.-+.+.|+++.|+++++-.-..- .-. .|.
T Consensus 391 apvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk 470 (840)
T KOG2003|consen 391 APVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGK 470 (840)
T ss_pred ccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhccc
Confidence 0000000 0 0001112234555677788888877654221100 000 000
Q ss_pred --------------CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 010063 282 --------------ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE 347 (519)
Q Consensus 282 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 347 (519)
.+...+.++.+-|.+-+..|++++|.+.|++++. ++.....+++++|..+..+|+.++
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~lde 542 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDE 542 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHH
Confidence 1122334555566666677888888888888876 455666788888888888888888
Q ss_pred HHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----------hhC---------
Q 010063 348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK----------YKG--------- 408 (519)
Q Consensus 348 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~--------- 408 (519)
|+++|-+...+.... +.++..++.+|..+.+..+|++++-++..+... ++.
T Consensus 543 ald~f~klh~il~nn----------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 543 ALDCFLKLHAILLNN----------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHHHHHHHHHHHhh----------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 888888877765432 455677778888788888888777766543100 000
Q ss_pred -------CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHH
Q 010063 409 -------KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (519)
Q Consensus 409 -------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (519)
...|...++...||..|....-+++|+.+|+++--+ .|........++.++.+.|+|++|.+.|+
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 011222233333444444444455555555554332 34455555667777777777777777776
Q ss_pred HHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhh
Q 010063 482 EALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLL 515 (519)
Q Consensus 482 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg 515 (519)
..-.-+ |.- ..|+.-|-.+...+|
T Consensus 685 ~~hrkf--------ped--ldclkflvri~~dlg 708 (840)
T KOG2003|consen 685 DIHRKF--------PED--LDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHhC--------ccc--hHHHHHHHHHhcccc
Confidence 654422 211 355666666555554
No 33
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.81 E-value=2.7e-16 Score=162.46 Aligned_cols=308 Identities=12% Similarity=0.076 Sum_probs=241.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
....+..+.+.|+.++|.++++++.+. + ......++..+...|.+.|++++|..+|+.+.... -.|
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~-------G--v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-----v~P 540 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNA-------G--VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-----VKP 540 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-----CCC
Confidence 444567789999999999999998754 1 22346789999999999999999999999876532 224
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
+. .+|..+...|.+.|++++|.+++.++...... -.|+ ..++..+...|.+.|++++|.++|+++.+.
T Consensus 541 D~-vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g----i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~------ 608 (1060)
T PLN03218 541 DR-VVFNALISACGQSGAVDRAFDVLAEMKAETHP----IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY------ 608 (1060)
T ss_pred CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC----CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------
Confidence 43 34889999999999999999999987653111 1122 457788889999999999999999988664
Q ss_pred CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
+.+....+|+.+...|.+.|++++|..+|+++.+. .-.|+ ..++..+...|.+.|++++|.++++++.+.
T Consensus 609 -gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-- 678 (1060)
T PLN03218 609 -NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-- 678 (1060)
T ss_pred -CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--
Confidence 23345678999999999999999999999998763 12344 347889999999999999999999998764
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (519)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (519)
+..+. ..++..+...|.+.|++++|.++|++.... ...|+ ..+|+.+...|.+.|++++|.++|++
T Consensus 679 -----G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~------g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 679 -----GIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSI------KLRPT-VSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred -----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22222 236788999999999999999999986542 12333 36789999999999999999999998
Q ss_pred HHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
+... .-.|+ ..++..+...+.+.|++++|..++.++.+
T Consensus 745 M~~~------Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 745 MKRL------GLCPN-TITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8652 12344 34677788899999999999999999876
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.7e-17 Score=146.25 Aligned_cols=324 Identities=15% Similarity=0.161 Sum_probs=252.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
+-..+...+..|+++.|+.+|..++.+ +|.....+.+...+|..+|+|++|.+--.+..++. |
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l----------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------p 67 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIML----------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------P 67 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHcc----------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------C
Confidence 455677888999999999999999988 66677788888889999999999988777776665 7
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH---------------H------------------------------
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE---------------S------------------------------ 235 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------~------------------------------ 235 (519)
.++..|..+|..+.-.|+|++|+..|.+.++.-. .
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 8888899999999999999999998887765400 0
Q ss_pred --------------------------h----c-------------------CC------------CCH------HHHHHH
Q 010063 236 --------------------------R----Y-------------------GK------------TSI------LLVTSL 248 (519)
Q Consensus 236 --------------------------~----~-------------------~~------------~~~------~~~~~~ 248 (519)
. . .+ +.. ..+...
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 0 0 00 000 123445
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010063 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (519)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (519)
..+|...+...++..|++.|..++++. .....+++.+-+|...|.+.+.+.....+++....... +...+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~klI 297 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKLI 297 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHHH
Confidence 678888999999999999999999884 33567788999999999999999998888876443310 11225
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc----------------cCCCCchHHHHHHHHHHHHHHHcCChHHH
Q 010063 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN----------------YMSLDDSIMENMRIDLAELLHIVGRGQEG 392 (519)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A 392 (519)
+.++..+|..|...++++.|+.+|++++.-.+... ...--.+..+.--..-|..++..|+|..|
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 55666688899999999999999999876543200 00000111222334568899999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCC
Q 010063 393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472 (519)
Q Consensus 393 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 472 (519)
+..|.+++. ..|+....|.|.|.||..+|++..|+...+.++++ +|.....|..-|.++..+.+
T Consensus 378 v~~YteAIk--------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 378 VKHYTEAIK--------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHHHHh--------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHH
Confidence 999999887 35888899999999999999999999999999884 68889999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 010063 473 DKEAEKLVLEALYIR 487 (519)
Q Consensus 473 ~~~A~~~~~~a~~~~ 487 (519)
|++|.+.|+++++..
T Consensus 442 ydkAleay~eale~d 456 (539)
T KOG0548|consen 442 YDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998853
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.8e-17 Score=147.74 Aligned_cols=278 Identities=15% Similarity=0.146 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC
Q 010063 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239 (519)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 239 (519)
+..+++...+..++..+++.+..++.+..++.. +-++.. .-..+| ++...|+..+ +|.-+.++..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d----pfh~~~--~~~~ia-~l~el~~~n~---Lf~lsh~LV~----- 306 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD----PFHLPC--LPLHIA-CLYELGKSNK---LFLLSHKLVD----- 306 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC----CCCcch--HHHHHH-HHHHhcccch---HHHHHHHHHH-----
Confidence 345667777888889999999988888877654 222222 234555 6677776544 4444444443
Q ss_pred CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (519)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (519)
..|..+.+|+.+|..|...|++.+|..++.++..+ ++..+.+|...|..+...|..++|+..|..|-++...
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 34666788999999999999999999999999877 6777889999999999999999999999999887643
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (519)
. . .....+|.-|...++++-|..+|.+|+.+. |.+|. ++..+|.+....+.|.+|..+|+.+
T Consensus 379 ~---h-----lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-------P~Dpl---v~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 379 C---H-----LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-------PSDPL---VLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred C---c-----chHHHHHHHHHHhccHHHHHHHHHHHHhcC-------CCcch---hhhhhhheeehHhhhHHHHHHHHHH
Confidence 2 1 234558999999999999999999999984 44544 3488999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063 400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479 (519)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 479 (519)
+...+... +..+.....+.+||.++.+++.+++|+.++++++.+ .|..+.++..+|-+|..+|+++.|+++
T Consensus 441 l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 441 LEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 97666654 334456678899999999999999999999999984 466677889999999999999999999
Q ss_pred HHHHHHHH
Q 010063 480 VLEALYIR 487 (519)
Q Consensus 480 ~~~a~~~~ 487 (519)
|.+++.+.
T Consensus 512 fhKaL~l~ 519 (611)
T KOG1173|consen 512 FHKALALK 519 (611)
T ss_pred HHHHHhcC
Confidence 99999764
No 36
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=141.57 Aligned_cols=282 Identities=16% Similarity=0.199 Sum_probs=224.8
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHH
Q 010063 128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILL 207 (519)
Q Consensus 128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (519)
++...|...|-...+..+++-.............-.--..+|.||..+|-+.+|.+.++..+...+ +++ .+.
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-----~~d---Tfl 260 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-----HPD---TFL 260 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-----chh---HHH
Confidence 355667777877777666654332211111222223345799999999999999999998876542 222 377
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 010063 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 287 (519)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (519)
.|+.+|....+...|+..+.+.++.+ |..+..+..++.++..++++++|.++|+.+++. ++...
T Consensus 261 lLskvY~ridQP~~AL~~~~~gld~f--------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nv 324 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVIGEGLDSF--------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINV 324 (478)
T ss_pred HHHHHHHHhccHHHHHHHHhhhhhcC--------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccc
Confidence 89999999999999999999988753 444677889999999999999999999999986 56667
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010063 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367 (519)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (519)
.+...+|..|...++++-|+.+|++.+.+ |..+ ...+.|+|.+++..+++|-++..|++++....
T Consensus 325 EaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat------- 389 (478)
T KOG1129|consen 325 EAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQS---PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT------- 389 (478)
T ss_pred eeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCC---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-------
Confidence 77788899999999999999999999987 2233 45689999999999999999999999998853
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
.+...+.+|+|+|.+....|++.-|...|+-++. .+++...++++||.+-.+.|+.++|..++..|-..
T Consensus 390 ~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~--- 458 (478)
T KOG1129|consen 390 QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV--- 458 (478)
T ss_pred CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh---
Confidence 3555678899999999999999999999998876 56777899999999999999999999999988763
Q ss_pred hcCCCCcchhHHHHHHH
Q 010063 448 TVGPDDQSISFPMLHLG 464 (519)
Q Consensus 448 ~~~~~~~~~~~~~~~la 464 (519)
.|+..+...+++
T Consensus 459 -----~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 459 -----MPDMAEVTTNLQ 470 (478)
T ss_pred -----Ccccccccccee
Confidence 355555445544
No 37
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.78 E-value=1.2e-16 Score=163.32 Aligned_cols=328 Identities=14% Similarity=0.120 Sum_probs=237.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHH------------HHh--------------cCCCChHHHHHHHHHHHHHHh
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKE------------QIN--------------AGNKGIEEVAILDIIALGYVY 174 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~------------~~~--------------~~~~~~~~~~~~~~l~~~~~~ 174 (519)
+...+..+.+.|++++|+.+|+++++.-.. ... ....-.....+++.+...|.+
T Consensus 192 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k 271 (697)
T PLN03081 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271 (697)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH
Confidence 455667888999999999999998653000 000 000011123355677888999
Q ss_pred cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (519)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (519)
.|++++|...|+.+.. +. ..+|+.+...|...|++++|+.+|++.... ...++ ..++..+...
T Consensus 272 ~g~~~~A~~vf~~m~~---------~~-~vt~n~li~~y~~~g~~~eA~~lf~~M~~~---g~~pd----~~t~~~ll~a 334 (697)
T PLN03081 272 CGDIEDARCVFDGMPE---------KT-TVAWNSMLAGYALHGYSEEALCLYYEMRDS---GVSID----QFTFSIMIRI 334 (697)
T ss_pred CCCHHHHHHHHHhCCC---------CC-hhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHH
Confidence 9999999999876521 11 235889999999999999999999987542 11122 4478888899
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010063 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS 334 (519)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 334 (519)
+...|++++|.+.+..+++. ..+....+++.+...|.+.|++++|...|++..+ ++ ..+|+.
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~d-~~t~n~ 396 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------KN-LISWNA 396 (697)
T ss_pred HHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------CC-eeeHHH
Confidence 99999999999999888765 2333456788899999999999999999987642 22 347889
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhH
Q 010063 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 414 (519)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 414 (519)
+...|.+.|+.++|+++|+++.+. ...|+ ..++..+...+...|..++|.++|+...+.. ...|+
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd----~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-----g~~p~- 461 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAE-----GVAPN----HVTFLAVLSACRYSGLSEQGWEIFQSMSENH-----RIKPR- 461 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCCC-
Confidence 999999999999999999998764 12233 2345778888999999999999998876531 11222
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010063 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494 (519)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 494 (519)
...|..+...|.+.|++++|.+.++++ +..|+ ..++..+...+...|+.+.|...+++.+++ +++
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~-----~p~ 526 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRA---------PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGM-----GPE 526 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCC-----CCC
Confidence 356778899999999999999887643 22233 346788888899999999999988877543 233
Q ss_pred CCcchhhHHHHHHHHHHHHhhhcc
Q 010063 495 SLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 495 ~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
+. ..+..|..+|...|++.
T Consensus 527 ~~-----~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 527 KL-----NNYVVLLNLYNSSGRQA 545 (697)
T ss_pred CC-----cchHHHHHHHHhCCCHH
Confidence 33 34778888998888764
No 38
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.78 E-value=8.6e-16 Score=131.09 Aligned_cols=319 Identities=16% Similarity=0.085 Sum_probs=249.7
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (519)
.+..-+..+..++..|++..|+..|..|++. +|..-.+++..|.+|..+|+-..|+.-+.+++++.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---- 102 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---- 102 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC----
Confidence 4455778899999999999999999999988 89999999999999999999999999999998775
Q ss_pred CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010063 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYH 269 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 269 (519)
|+...+....|.++..+|++++|..-|.++++......... .......+......+...|++..|+.+..
T Consensus 103 ---pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 103 ---PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred ---ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 77777788999999999999999999999887421100000 00112233444556777899999999999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 010063 270 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349 (519)
Q Consensus 270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 349 (519)
..+++ .|..+..+...+.+|...|+...|+.-++.+-++ ..+....++.++.+++..|+.+.++
T Consensus 180 ~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 180 HLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHHH
Confidence 99987 5666788888999999999999999999888765 2344457889999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCchHHHHHHHHHH---------HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 010063 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLA---------ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420 (519)
Q Consensus 350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la---------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 420 (519)
...++++++ .|++..-...|-.+- .-....++|.++++..++.++.-.+ ..+........
T Consensus 244 ~~iRECLKl-------dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~----~~~ir~~~~r~ 312 (504)
T KOG0624|consen 244 KEIRECLKL-------DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE----ETMIRYNGFRV 312 (504)
T ss_pred HHHHHHHcc-------CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc----ccceeeeeehe
Confidence 999999987 566654443333332 2334556677777666666552111 12223445567
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
+..|+..-|++.+|+....++++ ..|+.+.++...|.+|.....|+.|+.-|++|.+..
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~--------~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLD--------IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHh--------cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 78899999999999999999998 357778899999999999999999999999998754
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.3e-16 Score=142.22 Aligned_cols=272 Identities=12% Similarity=0.074 Sum_probs=217.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHH
Q 010063 133 NKNDAIDLLQANYEAVKEQINAGN---KGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM 209 (519)
Q Consensus 133 ~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (519)
.|.+|.+.+.+............. .....+.++...|..++-.|++-.|...++.++.+.. .....|..+
T Consensus 294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~-------~~~~lyI~~ 366 (606)
T KOG0547|consen 294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP-------AFNSLYIKR 366 (606)
T ss_pred hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc-------ccchHHHHH
Confidence 688888888877655444321111 1234477888999999999999999999999998762 222338889
Q ss_pred HHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 010063 210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 289 (519)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 289 (519)
|..|....+..+....|.+|..+ +|....+|+..|.+++-.+++++|+.-|++++.+ .|..+..
T Consensus 367 a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~ 430 (606)
T KOG0547|consen 367 AAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYA 430 (606)
T ss_pred HHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHH
Confidence 99999999999999999999886 2444668899999999999999999999999997 6778899
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369 (519)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (519)
+..++...++++++++++..|+++.+. .|....+++..|.++..+++|++|++.|+.++++-...... .
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~---~ 499 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI---I 499 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc---c
Confidence 999999999999999999999999884 47777889999999999999999999999999985442100 0
Q ss_pred hHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 370 SIMENMRIDLAEL-LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 370 ~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
.. +..+...|.+ +.-.+++..|+.++++|+++ +|..-.++..||.+..++|+.++|+++|+++..+.+.
T Consensus 500 v~-~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 500 VN-AAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred cc-chhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 00 1112222222 22458999999999999985 5666678999999999999999999999999987654
No 40
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.77 E-value=5.7e-15 Score=127.03 Aligned_cols=346 Identities=14% Similarity=0.091 Sum_probs=269.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
-+..+..++...++++|+..+.+.+..... .......+-.+..+...+|.|++++.+--..+...... ++..
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~-------~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~-~ds~ 80 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSD-------LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL-EDSD 80 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHH-------HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 455778889999999999999998887554 44556677788888999999999887765555544332 2334
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
....++.+++..+....++.+++.+-...+.+- +.+. ..-......+|..+..++.++++++.|++|+++.....
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~ 156 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND 156 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC
Confidence 455678899999999999999998877666542 1111 12235566789999999999999999999999987654
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND--GRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
+......++..||..+....++++|.-+..+|.++.....-.+. .....+++.++..+..+|+.-.|.++.+++.+
T Consensus 157 --D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 157 --DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred --CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 33344678889999999999999999999999999876632221 22456788899999999999999999999999
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHH----
Q 010063 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE---- 433 (519)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---- 433 (519)
+.-. ..+.+..+.....+|.+|...|+.+.|..-|++|..+..... +......++...|.++....-..+
T Consensus 235 lal~----~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g--drmgqv~al~g~Akc~~~~r~~~k~~~C 308 (518)
T KOG1941|consen 235 LALQ----HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG--DRMGQVEALDGAAKCLETLRLQNKICNC 308 (518)
T ss_pred HHHH----hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 8776 467777888889999999999999999999999999887763 444556677777877766555555
Q ss_pred -HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063 434 -AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (519)
Q Consensus 434 -A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (519)
|++.-++++++..++. ...........++.+|..+|.-++=...+..+-+..+
T Consensus 309 rale~n~r~levA~~IG--~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~ 362 (518)
T KOG1941|consen 309 RALEFNTRLLEVASSIG--AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVE 362 (518)
T ss_pred chhHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 9999999999988762 2345667788999999999998888888777665543
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.5e-14 Score=122.81 Aligned_cols=306 Identities=14% Similarity=0.118 Sum_probs=235.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
-+-.+..+.-..+.++|++.|..+++. +++..++...+|..|...|..+.|+.+.+...... +-...
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~----------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~ 104 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQE----------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFE 104 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhc----------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchH
Confidence 344566677788999999999999886 88899999999999999999999999998876543 22223
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
....++..||.-|...|-++.|+..|....+.- .....++..+..+|....+|++|++..++...+-.+
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~--------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q--- 173 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG--------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ--- 173 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch--------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---
Confidence 455678999999999999999999998876531 233557788899999999999999999888776322
Q ss_pred CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
+.....+..+..++..+....+.+.|...+.+|++. +|....+-..+|.+....|+|+.|++.++.+++.
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-- 243 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-- 243 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh--
Confidence 234567888899999999999999999999999984 5777778888999999999999999999998775
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (519)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (519)
++..+..+...|..+|...|+.++....+.++.+... .+ .....++..-....-.+.|..++.+
T Consensus 244 -------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~------g~---~~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 244 -------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT------GA---DAELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred -------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC------Cc---cHHHHHHHHHHHhhChHHHHHHHHH
Confidence 5666777888999999999999999999999887532 11 2334455555566666777777766
Q ss_pred HHHHHHHhcCCCCcchhHHHHHHHHHHH---hcCChHHHHHHHHHHHH
Q 010063 441 CLDIMTKTVGPDDQSISFPMLHLGITLY---HLNRDKEAEKLVLEALY 485 (519)
Q Consensus 441 al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~ 485 (519)
-+. .+|.....+. +-.... .-|...+....++..+.
T Consensus 308 Ql~--------r~Pt~~gf~r-l~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 308 QLR--------RKPTMRGFHR-LMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHh--------hCCcHHHHHH-HHHhhhccccccchhhhHHHHHHHHH
Confidence 555 3566554433 332222 23445666666666654
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=1.9e-15 Score=152.02 Aligned_cols=165 Identities=11% Similarity=-0.069 Sum_probs=118.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-h--h-
Q 010063 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK-Y--K- 407 (519)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~- 407 (519)
....|..|...+++++|+.+|++++.-.... .+.+.. ......|...|...+++++|..++++..+...- . .
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~---~~~~~~-~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKT---FRNSDD-LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccc---cCCCcc-hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 3445667777788888888887775532110 011111 122356788889999999999999988763210 0 1
Q ss_pred ---CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010063 408 ---GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484 (519)
Q Consensus 408 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (519)
...+|+.......++.++...|++.+|++.+++.+.. .|........+|.++...|++.+|+..++.+.
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------APANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 1246777788889999999999999999999998773 46667778899999999999999999997776
Q ss_pred HHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 485 YIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
.+. |+.. ......|.++..+|+++
T Consensus 478 ~l~-----P~~~-----~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 478 SLA-----PRSL-----ILERAQAETAMALQEWH 501 (822)
T ss_pred hhC-----CccH-----HHHHHHHHHHHhhhhHH
Confidence 642 3333 33668888988888875
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.9e-15 Score=133.73 Aligned_cols=195 Identities=14% Similarity=0.099 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
..+++++|..+..+|+.++|+++|-+...+.. ..+.++..++.+|..+.+..+|++++-++..+
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il~--------nn~evl~qianiye~led~aqaie~~~q~~sl-------- 587 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAILL--------NNAEVLVQIANIYELLEDPAQAIELLMQANSL-------- 587 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------
Confidence 44444444444444444444444444443321 12344444444444444444444444444332
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (519)
.|....++..||.+|-+.|+-.+|.+++-.....+. .. ..+...||..|....=+++|+.+|+++--
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp-------~n---ie~iewl~ayyidtqf~ekai~y~ekaal--- 654 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP-------CN---IETIEWLAAYYIDTQFSEKAINYFEKAAL--- 654 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC-------cc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHh---
Confidence 122222344445555555555555444444333311 11 11223455555555556666666666543
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 010063 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (519)
..|........++.|+.+.|+|.+|.+.|+.... ..|....++.-|..+.-.+|- .+|.++-.+
T Consensus 655 -----iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--------kfpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 655 -----IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--------KFPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred -----cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--------hCccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 2456666677889999999999999999998765 246667777777777777664 344444433
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=3.3e-16 Score=154.58 Aligned_cols=251 Identities=10% Similarity=-0.027 Sum_probs=193.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063 132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---------GDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (519)
Q Consensus 132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (519)
+++++|+.+++++++. +|..+.++..+|.++... +++++|...+++++++. |..
T Consensus 275 ~~~~~A~~~~~~Al~l----------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~ 337 (553)
T PRK12370 275 YSLQQALKLLTQCVNM----------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNN 337 (553)
T ss_pred HHHHHHHHHHHHHHhc----------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCC
Confidence 4578999999999988 777888888999887643 34789999999988764 444
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
..++..+|.++...|++++|+..|++++++. |....++..+|.++...|++++|+..+++++++
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-------- 401 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLS--------PISADIKYYYGWNLFMAGQLEEALQTINECLKL-------- 401 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 5568889999999999999999999999862 444667889999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
+|........++.++...|++++|+..+++++.. ..|.....+.++|.++...|++++|...+.+....
T Consensus 402 ~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---- 470 (553)
T PRK12370 402 DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---- 470 (553)
T ss_pred CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----
Confidence 3444444455666777899999999999998764 23555567888999999999999999999876443
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (519)
.+........++..|...| ++|...+++.++...... .++ ..++.+|.-.|+.+.+..+ +++.
T Consensus 471 ------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~--~~~------~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 471 ------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID--NNP------GLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred ------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh--cCc------hHHHHHHHHHhhhHHHHHH-HHhh
Confidence 2222345577888888888 488888888666544321 111 2267778888888888776 6554
Q ss_pred H
Q 010063 443 D 443 (519)
Q Consensus 443 ~ 443 (519)
+
T Consensus 534 ~ 534 (553)
T PRK12370 534 N 534 (553)
T ss_pred c
Confidence 4
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=7.9e-18 Score=152.28 Aligned_cols=266 Identities=18% Similarity=0.169 Sum_probs=109.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (519)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (519)
+..+..++..|++++|++.+.+.+... .++.....+..+|.+....|+++.|+..+++++... +.
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~--------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-------~~ 76 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI--------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-------KA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--------cccccccccccccccccccccccccccccccccccc-------cc
Confidence 456888899999999999997665431 135566788889999999999999999999987654 22
Q ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010063 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (519)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (519)
....+..++.+ ...+++++|..+++++.+.. .+ ...+.....++...++++++...++++....
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~---~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------ 140 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERD------GD---PRYLLSALQLYYRLGDYDEAEELLEKLEELP------ 140 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T------
T ss_pred ccccccccccc-cccccccccccccccccccc------cc---cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc------
Confidence 22335566666 68999999999998876542 11 2334456778889999999999999977421
Q ss_pred CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
..+.....+..+|.++...|++++|+..++++++. .|....+...++.++...|+++++.+.+....+....
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence 23455778899999999999999999999999996 4666667788999999999999988888887766422
Q ss_pred hccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (519)
++. .+..+|.++...|++++|+.++++++.. +|.....+..+|.++...|+.++|..+++++
T Consensus 213 -------~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 213 -------DPD---LWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -------SCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT---------------
T ss_pred -------HHH---HHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccc
Confidence 222 3467899999999999999999998874 4555677889999999999999999999998
Q ss_pred HHH
Q 010063 442 LDI 444 (519)
Q Consensus 442 l~~ 444 (519)
+..
T Consensus 275 ~~~ 277 (280)
T PF13429_consen 275 LRL 277 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 764
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=5.5e-15 Score=140.66 Aligned_cols=316 Identities=12% Similarity=0.001 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
.......|......|+++.|.+.+.++.+. .|.....+...|.++...|+++.|..++.++.+.. +.
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~----------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~ 150 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH----------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---GN 150 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---Cc
Confidence 334567778889999999999999887665 44445566678999999999999999999987543 12
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (519)
.... +....+.++...|++++|...+++..+. .|++ ..++..++.++...|++++|.+.+.+..+..
T Consensus 151 ~~l~---~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~---~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-- 217 (409)
T TIGR00540 151 DNIL---VEIARTRILLAQNELHAARHGVDKLLEM-----APRH---KEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-- 217 (409)
T ss_pred CchH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--
Confidence 1111 2344588999999999999999988775 2333 4567789999999999999999998887651
Q ss_pred hcCCCChhhH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063 278 NRGTESADLV-LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (519)
Q Consensus 278 ~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (519)
..++... ........-....+..+++...+.++...... ..+.....+..++..+...|++++|.+.+++++
T Consensus 218 ---~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 218 ---LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 1122222 22222222223334444455566655543211 112355677889999999999999999999999
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHHHhccCHHHH
Q 010063 357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV--THLLNLAASYSRSKNFVEA 434 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A 434 (519)
+.. +++...... ..........++.+.+.+.++++++. +|+.. ..+..+|.++...|++++|
T Consensus 291 ~~~-------pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A 354 (409)
T TIGR00540 291 KKL-------GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEA 354 (409)
T ss_pred hhC-------CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHH
Confidence 872 333321100 11222333457788888888887763 34444 6788899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010063 435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (519)
Q Consensus 435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 489 (519)
.++|+++.... .+|+... +..+|.++.+.|+.++|.+++++++...-.
T Consensus 355 ~~~le~a~a~~------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 355 ADAFKNVAACK------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLMLA 402 (409)
T ss_pred HHHHHHhHHhh------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 99999543321 2344433 458999999999999999999999887643
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=2e-15 Score=149.11 Aligned_cols=263 Identities=12% Similarity=0.024 Sum_probs=198.1
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHcc---------ccHHHHHHHHHHHHH
Q 010063 164 ILDIIALGYVY---IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL---------ENYEKSMLVYQRVIN 231 (519)
Q Consensus 164 ~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~ 231 (519)
.++..|..... .+++++|+..+++++++. |....++..+|.++... +++++|+..++++++
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34445554433 345678999999988764 44555677788776533 458899999999988
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010063 232 VLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 311 (519)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 311 (519)
+ +|....++..+|.++...|++++|+..|++++++ .|....+++.+|.++...|++++|+..++
T Consensus 333 l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 333 L--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred c--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6 2344667888999999999999999999999997 56677889999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHH
Q 010063 312 RILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE 391 (519)
Q Consensus 312 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 391 (519)
+++++ +|........++.++...|++++|+..+++++... .++. ...+..+|.++...|++++
T Consensus 397 ~Al~l--------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~------~p~~---~~~~~~la~~l~~~G~~~e 459 (553)
T PRK12370 397 ECLKL--------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH------LQDN---PILLSMQVMFLSLKGKHEL 459 (553)
T ss_pred HHHhc--------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc------cccC---HHHHHHHHHHHHhCCCHHH
Confidence 99986 33333344456667778999999999999987652 1223 3355789999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC
Q 010063 392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 471 (519)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 471 (519)
|...+++... ..|........++..|...| ++|...+++.++..... +.++ ..++.+|.-.|
T Consensus 460 A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g 521 (553)
T PRK12370 460 ARKLTKEIST--------QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNP------GLLPLVLVAHG 521 (553)
T ss_pred HHHHHHHhhh--------ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHh
Confidence 9999987644 34555567788888888888 48888888876654332 1221 23677888899
Q ss_pred ChHHHHHHHHHHHH
Q 010063 472 RDKEAEKLVLEALY 485 (519)
Q Consensus 472 ~~~~A~~~~~~a~~ 485 (519)
+.+.|..+ +++.+
T Consensus 522 ~~~~~~~~-~~~~~ 534 (553)
T PRK12370 522 EAIAEKMW-NKFKN 534 (553)
T ss_pred hhHHHHHH-HHhhc
Confidence 98888877 66655
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=2.2e-16 Score=133.81 Aligned_cols=280 Identities=15% Similarity=0.072 Sum_probs=224.7
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhh--cCCCchH-HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS--LKDDEPL-LDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (519)
.|....+++. .+++...|...|........++... .+...-. -.+.-..+|.||...|-+.+|.+.++.++.-.
T Consensus 177 ~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~- 253 (478)
T KOG1129|consen 177 RPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF- 253 (478)
T ss_pred ChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-
Confidence 4444444443 3566677888887666554443222 1111111 11224579999999999999999999988742
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010063 235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314 (519)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 314 (519)
.+ .+++..++.+|....++..|+..+.+.++. .|.....+..+++++..++++++|.++|+.++
T Consensus 254 -----~~---~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 254 -----PH---PDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred -----Cc---hhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 22 556778999999999999999999999875 56677888899999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 010063 315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394 (519)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (519)
+. ++....+...+|.-|+..++++-|+.+|++.+.+ +...+ ..+.|+|.|..-.++++-++.
T Consensus 318 k~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-------G~~sp---eLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 318 KL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-------GAQSP---ELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred hc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-------cCCCh---HHHhhHHHHHHhhcchhhhHH
Confidence 84 5666667777899999999999999999999987 44444 345899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChH
Q 010063 395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK 474 (519)
Q Consensus 395 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 474 (519)
.|++++.... .....+++|+++|.+....|++.-|..+|+-++. .+++...++++||.+-.+.|+.+
T Consensus 380 sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 380 SFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchH
Confidence 9999998763 2345678999999999999999999999998887 46778889999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 010063 475 EAEKLVLEALYIR 487 (519)
Q Consensus 475 ~A~~~~~~a~~~~ 487 (519)
+|..++..|-...
T Consensus 447 ~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 447 GARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHHhhhhC
Confidence 9999999987765
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=7.2e-18 Score=152.52 Aligned_cols=266 Identities=20% Similarity=0.203 Sum_probs=107.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010063 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246 (519)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 246 (519)
.+|.++...|++++|.+.+.+...... +|.....+..+|.+....+++++|+..|++.+.... ....
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-----~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~--------~~~~ 79 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA-----PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK--------ANPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccc--------cccc
Confidence 669999999999999999965433220 133335577899999999999999999999887532 2233
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (519)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (519)
.+..++.+ ...+++++|..+++++.+.. .....+..+..++...++++++...++++... ...+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~ 143 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERD---------GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAAP 143 (280)
T ss_dssp ------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T---
T ss_pred cccccccc-cccccccccccccccccccc---------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCC
Confidence 45566666 68999999999998876542 11234455677889999999999999997742 1234
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (519)
.....+..+|.++...|+.++|+..++++++. .|+++. +...++.++...|+++++.+.+.......
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-------~P~~~~---~~~~l~~~li~~~~~~~~~~~l~~~~~~~--- 210 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL-------DPDDPD---ARNALAWLLIDMGDYDEAREALKRLLKAA--- 210 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--------TT-HH---HHHHHHHHHCTTCHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHH---HHHHHHHHHHHCCChHHHHHHHHHHHHHC---
Confidence 55668889999999999999999999999998 344443 44678999999999999888877765543
Q ss_pred hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
+.+| ..+..+|.++...|++++|+.++++++.. +|.....+..+|.++...|+.++|..++++++..
T Consensus 211 --~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 211 --PDDP---DLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp --HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT------------------
T ss_pred --cCHH---HHHHHHHHHhccccccccccccccccccc--------cccccccccccccccccccccccccccccccccc
Confidence 1233 34567899999999999999999998873 4555667789999999999999999999998865
Q ss_pred H
Q 010063 487 R 487 (519)
Q Consensus 487 ~ 487 (519)
.
T Consensus 278 l 278 (280)
T PF13429_consen 278 L 278 (280)
T ss_dssp -
T ss_pred c
Confidence 4
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=1.1e-15 Score=135.27 Aligned_cols=204 Identities=16% Similarity=0.113 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
......+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 94 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL----- 94 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 345778889999999999999999999999875 4556788899999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (519)
.|.....+.++|.++...|++++|+..+++++... ..+.....+..+|.++...|++++|...+++++.
T Consensus 95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23444578899999999999999999999998742 1222234567899999999999999999999987
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHH
Q 010063 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (519)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (519)
.. |.....+..+|.++...|++++|..++++++.. .+.....+..++.++...|+.++|..+.+
T Consensus 164 ~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 164 ID--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred hC--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 52 333457788999999999999999999999885 12334555678899999999999999887
Q ss_pred HHHH
Q 010063 482 EALY 485 (519)
Q Consensus 482 ~a~~ 485 (519)
.+..
T Consensus 228 ~~~~ 231 (234)
T TIGR02521 228 QLQK 231 (234)
T ss_pred HHHh
Confidence 7654
No 51
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.74 E-value=1.7e-15 Score=154.92 Aligned_cols=293 Identities=14% Similarity=0.086 Sum_probs=229.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (519)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
.+..|.+.|++++|.+.|++. .+....+|+.+...|...|++++|..+|+++.... -.|+..
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m-------------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-----~~pd~~ 326 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGM-------------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-----VSIDQF 326 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhC-------------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCHH
Confidence 456778889999999888764 22346789999999999999999999999876532 123333
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (519)
.+..+...+...|++++|...+..+++.. ..+ ...++..+...|.+.|++++|...|++..+
T Consensus 327 -t~~~ll~a~~~~g~~~~a~~i~~~m~~~g---~~~----d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------- 388 (697)
T PLN03081 327 -TFSIMIRIFSRLALLEHAKQAHAGLIRTG---FPL----DIVANTALVDLYSKWGRMEDARNVFDRMPR---------- 388 (697)
T ss_pred -HHHHHHHHHHhccchHHHHHHHHHHHHhC---CCC----CeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------
Confidence 48889999999999999999999887641 112 245678899999999999999999987632
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
+ ...+|+.+...|...|+.++|+++|+++.+. .-.|+. .++..+...+...|..++|.++|+.+.+...
T Consensus 389 ~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~------g~~Pd~-~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g--- 457 (697)
T PLN03081 389 K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE------GVAPNH-VTFLAVLSACRYSGLSEQGWEIFQSMSENHR--- 457 (697)
T ss_pred C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC---
Confidence 1 2468999999999999999999999998763 123443 4688888999999999999999999876421
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
..|+ ...|..+...|.+.|++++|.+++++. +..|+ ..+|..+...+...|+.+.|...+++.+.
T Consensus 458 -~~p~----~~~y~~li~~l~r~G~~~eA~~~~~~~---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 458 -IKPR----AMHYACMIELLGREGLLDEAYAMIRRA---------PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred -CCCC----ccchHhHHHHHHhcCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 1222 235678999999999999999988653 12333 35688899999999999999999888765
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
+ .|.....|..++.+|...|++++|.+.+++..+.
T Consensus 523 ~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 523 M--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred C--------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 2 3444557888999999999999999999988764
No 52
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=1.2e-15 Score=123.55 Aligned_cols=206 Identities=17% Similarity=0.143 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
.....+...+|.-|...|++..|..-++++++. +|....++..++.+|...|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 355777889999999999999999999999997 6778899999999999999999999999999995
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (519)
+|....+++|.|..++.+|++++|...|++|+.. |.-+....++.|+|.|..+.|+++.|.++|+++++
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~--------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD--------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC--------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 6778889999999999999999999999999874 55555567789999999999999999999999998
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHH
Q 010063 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (519)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (519)
+ +|........++..+...|++..|..+++..... .+..+.++.....+-...|+-+.|-++=.
T Consensus 168 ~--------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 168 L--------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred h--------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5 3444566778999999999999999998876551 22455666666677778899998888877
Q ss_pred HHHHHH
Q 010063 482 EALYIR 487 (519)
Q Consensus 482 ~a~~~~ 487 (519)
+....+
T Consensus 232 qL~r~f 237 (250)
T COG3063 232 QLQRLF 237 (250)
T ss_pred HHHHhC
Confidence 666544
No 53
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=1.2e-15 Score=123.39 Aligned_cols=204 Identities=18% Similarity=0.140 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
...+.+...||.-|...|++..|...+++|++. +|....++..+|.+|...|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 345667889999999999999999999999986 4666888999999999999999999999999997
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
+|....+++|.|..++.+|++++|...|++|+. .+.-+....++.|+|.+..+.|+++.|.++|+++++..
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 677889999999999999999999999999998 35566778899999999999999999999999999983
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010063 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (519)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (519)
++.+ .....++..+...|++..|..++++.... .+..+.++.....+-...|+-+.|.++-.
T Consensus 170 -------p~~~---~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 170 -------PQFP---PALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred -------cCCC---hHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2222 23467899999999999999998875442 22445666666777788899988888766
Q ss_pred HHHH
Q 010063 440 ICLD 443 (519)
Q Consensus 440 ~al~ 443 (519)
+...
T Consensus 232 qL~r 235 (250)
T COG3063 232 QLQR 235 (250)
T ss_pred HHHH
Confidence 6554
No 54
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.74 E-value=9.7e-15 Score=125.62 Aligned_cols=332 Identities=14% Similarity=0.045 Sum_probs=252.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010063 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV 245 (519)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 245 (519)
..-|.-++...++++|+..+.+.+..... .......+-.+..+...+|.|++++.+---.+..+... .+.....
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~----~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ 83 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSD----LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLL 83 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHH----HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 44466667788888998888776655422 23334456677888899999999988777666666553 3445667
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES-ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
.++.+++..+...-++.+++.+-+..+.+- +... ..-......+|..+..++.++++++.|+.|+++..... +
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D 157 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND--D 157 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--C
Confidence 889999999999999999988887776542 1111 22235666799999999999999999999999986652 2
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (519)
..-...++..||.++....++++|.-+..+|.++.......+-.......+++.++..+..+|+...|.++.+++.++.-
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 22345678899999999999999999999999998774222222334456678899999999999999999999999987
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHH-----HHHH
Q 010063 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-----AEKL 479 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~ 479 (519)
... +.+..+..+..+|++|...|+.+.|..-|++|..+.... .+......++...|.++....-..+ |+++
T Consensus 238 ~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~ 313 (518)
T KOG1941|consen 238 QHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCRALEF 313 (518)
T ss_pred HhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence 763 677788899999999999999999999999999988765 3344556677777887776554444 9999
Q ss_pred HHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063 480 VLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY 517 (519)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~ 517 (519)
-++++++..++ |..+. + ..+...++.+|..+|+-
T Consensus 314 n~r~levA~~I-G~K~~-v--lK~hcrla~iYrs~gl~ 347 (518)
T KOG1941|consen 314 NTRLLEVASSI-GAKLS-V--LKLHCRLASIYRSKGLQ 347 (518)
T ss_pred HHHHHHHHHHh-hhhHH-H--HHHHHHHHHHHHhccch
Confidence 99999999876 43333 2 24556889999888753
No 55
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.73 E-value=4.1e-14 Score=133.48 Aligned_cols=336 Identities=14% Similarity=0.048 Sum_probs=227.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
....+..+...|+.+.+...+.++..... ............+..+...|++++|...+++++... ++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~ 77 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALA-------ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY----PRDL 77 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcH
Confidence 44456677778899999888877776622 233455667778999999999999999999988764 2222
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
.++.. +..+...|++..+.....+++.. ..+.++.....+..+|.++...|++++|+..+++++++
T Consensus 78 ---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------ 143 (355)
T cd05804 78 ---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------ 143 (355)
T ss_pred ---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence 22333 55555566555555555555443 23456666778888999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
.|.....+..+|.++...|++++|+.++++++..... ........+..+|.++...|++++|+..+++++..
T Consensus 144 --~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~-- 215 (355)
T cd05804 144 --NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP-- 215 (355)
T ss_pred --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 3445678899999999999999999999999886321 11223446778999999999999999999998543
Q ss_pred hhccCCCCchHHHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010063 361 DSNYMSLDDSIMENM--RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (519)
Q Consensus 361 ~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (519)
.+........ ...+...+...|....+... +.......... +. +.....-...+.++...|+.++|...+
T Consensus 216 -----~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 216 -----SAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred -----ccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 1111111111 11233344445544433333 22222221111 11 112222235788889999999999999
Q ss_pred HHHHHHHHHhc-CCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcc
Q 010063 439 RICLDIMTKTV-GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 498 (519)
Q Consensus 439 ~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 498 (519)
+......+... .......+......+.++...|++++|...+..++.+...+ |..|.+.
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~-ggs~aq~ 347 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARI-GGSHAQR 347 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCcHHHH
Confidence 98877665410 01122345566778999999999999999999999999665 4444443
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=3.5e-15 Score=131.95 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=168.1
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
......+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+..++++++.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 94 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL----- 94 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 445667899999999999999999999999875 2334677888999999999999999999999986
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
.|.....+.++|.++...|++++|+..+++++... ..+.....+.++|.++...|++++|...+++++...
T Consensus 95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34445788899999999999999999999998731 234445578889999999999999999999998862
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010063 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (519)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (519)
++. ...+..+|.++...|++++|..++++++... +.....+..++.++...|+.++|..+.+
T Consensus 166 -------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 166 -------PQR---PESLLELAELYYLRGQYKDARAYLERYQQTY--------NQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred -------cCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 233 2356789999999999999999999998751 2223455678899999999999999877
Q ss_pred HHHH
Q 010063 440 ICLD 443 (519)
Q Consensus 440 ~al~ 443 (519)
.+..
T Consensus 228 ~~~~ 231 (234)
T TIGR02521 228 QLQK 231 (234)
T ss_pred HHHh
Confidence 6654
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.72 E-value=1.1e-14 Score=131.85 Aligned_cols=227 Identities=12% Similarity=0.092 Sum_probs=165.6
Q ss_pred cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (519)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (519)
.+..+.++..+.+++... ..+++..+..++.+|.+|...|++++|+..|++++++ .|....++..+|.+
T Consensus 39 ~~~~e~~i~~~~~~l~~~---~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~ 107 (296)
T PRK11189 39 TLQQEVILARLNQILASR---DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY 107 (296)
T ss_pred chHHHHHHHHHHHHHccc---cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 345566777777766543 2334556777999999999999999999999999986 24446789999999
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010063 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS 334 (519)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 334 (519)
+...|++++|+..|++++++ .|....++.++|.++...|++++|+..++++++. .++++.. ..+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~-- 171 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW-- 171 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH--
Confidence 99999999999999999987 5667789999999999999999999999999985 2333321 112
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhH
Q 010063 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 414 (519)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 414 (519)
..+....+++++|+..+.++.... .++. . ..+.++...|+..++ ..++.+.+...... ...+..
T Consensus 172 -~~l~~~~~~~~~A~~~l~~~~~~~------~~~~--~-----~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~ 235 (296)
T PRK11189 172 -LYLAESKLDPKQAKENLKQRYEKL------DKEQ--W-----GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERL 235 (296)
T ss_pred -HHHHHccCCHHHHHHHHHHHHhhC------Cccc--c-----HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHH
Confidence 223455789999999998766431 1111 1 134555567777554 24444332211100 012445
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 415 VTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
..++..+|.++...|++++|+.+|+++++.
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 679999999999999999999999999984
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=6.1e-14 Score=132.74 Aligned_cols=302 Identities=11% Similarity=0.059 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH-HHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDI-IALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
...+..|......||+++|.+...++-+. .+.+..++. .+.+....|+++.|..++.++.+.. +
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-----------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----~ 149 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADH-----------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA----D 149 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----C
Confidence 33566777778899999999766654332 112333344 4666699999999999999987643 2
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (519)
+ ..... ....+.++...|++++|...+++..+. . |....++..++.+|...|++++|...+.+..+..
T Consensus 150 ~-~~~~~-~l~~a~l~l~~g~~~~Al~~l~~~~~~-----~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-- 217 (398)
T PRK10747 150 N-DQLPV-EITRVRIQLARNENHAARHGVDKLLEV-----A---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-- 217 (398)
T ss_pred c-chHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhc-----C---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--
Confidence 2 22222 334588999999999999999998775 2 3335667788999999999999999998887642
Q ss_pred hcCCCChhhHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 010063 278 NRGTESADLVL-----PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352 (519)
Q Consensus 278 ~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (519)
..++.... ++..+........+ ...+.+..+...+ ..+........++..+...|+.++|...+
T Consensus 218 ---~~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~----~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 218 ---VGDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSR----KTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCH----HHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 11122111 22222221222222 2223332222111 12344556778999999999999999999
Q ss_pred HHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHH
Q 010063 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432 (519)
Q Consensus 353 ~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 432 (519)
+++++. .+ ++.... .......++.+++++..++.++ .+|+....+..+|.++...|+++
T Consensus 287 ~~~l~~-------~~-~~~l~~-----l~~~l~~~~~~~al~~~e~~lk--------~~P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 287 LDGLKR-------QY-DERLVL-----LIPRLKTNNPEQLEKVLRQQIK--------QHGDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHhc-------CC-CHHHHH-----HHhhccCCChHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHCCCHH
Confidence 998873 22 332221 1222345899999998888775 46777778889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (519)
Q Consensus 433 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (519)
+|.++|+++++. .|+. ..+..++.++..+|+.++|..+|++++.+..
T Consensus 346 ~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 346 EASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 999999999983 3443 3456899999999999999999999988653
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=4.5e-14 Score=119.87 Aligned_cols=272 Identities=18% Similarity=0.153 Sum_probs=211.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010063 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV 245 (519)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 245 (519)
+.-|.-+.-..+.++|+..|..+++. +|....+...||+.|...|..+.|+...+..++.- +-......
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~-------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr~ 107 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE-------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQRL 107 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc-------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHHH
Confidence 34466677788999999999887753 36677779999999999999999999888665421 11122456
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (519)
.++..+|.-|+..|-++.|+..|....+. ......++..|..+|....+|++|++..++..++-.+. ..
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~~ 176 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---YR 176 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---ch
Confidence 78889999999999999999999988763 23345688889999999999999999998887763322 34
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010063 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 405 (519)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 405 (519)
..++..+..++..+....+.+.|...+.+|++..++ ...+-..+|.++...|+|+.|++.++.+++-
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~----------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--- 243 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKK----------CVRASIILGRVELAKGDYQKAVEALERVLEQ--- 243 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc----------ceehhhhhhHHHHhccchHHHHHHHHHHHHh---
Confidence 568888999999999999999999999999987332 2344467999999999999999999998763
Q ss_pred hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
++.....+...|..+|..+|+.++....+.++.+... .+ .....++..-....-.+.|..++.+-+.
T Consensus 244 ----n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~------g~---~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 244 ----NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT------GA---DAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred ----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC------Cc---cHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 4556678888999999999999999999999887431 12 2234455555556566677766655544
No 60
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=8.4e-14 Score=140.32 Aligned_cols=331 Identities=10% Similarity=0.013 Sum_probs=232.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
+...+..+...|++++|+++|+++++. .|..+.++..++..+...++.++|+..++++.... |
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~----------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-------p 167 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKK----------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-------P 167 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-------c
Confidence 555677888999999999999999988 66677888888999999999999999998876553 3
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH---------------------------------------------
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES--------------------------------------------- 235 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------------------- 235 (519)
.... +..++.++...++..+|+..++++++....
T Consensus 168 ~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~ 246 (822)
T PRK14574 168 TVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAA 246 (822)
T ss_pred chHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHH
Confidence 2222 234455555567776788888888775100
Q ss_pred ------------------------------hc------CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 236 ------------------------------RY------GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 236 ------------------------------~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
.. .+.++....+....-.++...|++.++++.|+....
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~------ 320 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA------ 320 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh------
Confidence 00 000001111222222233344444444444443322
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
+..+.-..+....|..|...+++++|+.+|++++.-..... ..+........|-..|...+++++|..++++..+..
T Consensus 321 -~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 321 -EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred -cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 12222345677889999999999999999999876321100 112233334678888999999999999999987632
Q ss_pred H-hhc----cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHH
Q 010063 360 K-DSN----YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434 (519)
Q Consensus 360 ~-~~~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 434 (519)
. ... .....++........++.++...|++.+|++.+++.+.. .|........+|.++...|.+.+|
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------APANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 2 000 011234455577788999999999999999999998764 466677888999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcch
Q 010063 435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 499 (519)
Q Consensus 435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 499 (519)
...++.++.+ +|....+...+|.++..+|++.+|.....++++.. |+++.+.
T Consensus 470 ~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~-----Pe~~~~~ 521 (822)
T PRK14574 470 EQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRS-----PEDIPSQ 521 (822)
T ss_pred HHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC-----CCchhHH
Confidence 9999877763 56677788899999999999999999999998866 5566553
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.71 E-value=8.7e-15 Score=132.46 Aligned_cols=228 Identities=14% Similarity=0.035 Sum_probs=168.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010063 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (519)
Q Consensus 216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (519)
.+..+.++..+.+++.... .+.+..+..++.+|.+|...|++++|+..|++++++ .|....+++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~ 106 (296)
T PRK11189 39 TLQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGI 106 (296)
T ss_pred chHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHH
Confidence 4566778888887775321 233455788999999999999999999999999986 5667899999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 010063 296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 375 (519)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 375 (519)
++...|++++|+..|++++++ +|....++.++|.++...|++++|++.++++++. .|+++.. ..
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-------~P~~~~~-~~ 170 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-------DPNDPYR-AL 170 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHH-HH
Confidence 999999999999999999985 4666778999999999999999999999999987 3444421 11
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010063 376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (519)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (519)
+ ..+....+++++|+..+.++.... ++.. + ..+.++...|+..++ ..++.+........ ...|.
T Consensus 171 ~---~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~ 234 (296)
T PRK11189 171 W---LYLAESKLDPKQAKENLKQRYEKL-------DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAER 234 (296)
T ss_pred H---HHHHHccCCHHHHHHHHHHHHhhC-------Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHH
Confidence 1 223455788999999998765321 1111 1 124455556666544 23444432111000 01244
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
...+++++|.++...|++++|+.+|++++++.
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999754
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=6.6e-14 Score=134.48 Aligned_cols=280 Identities=13% Similarity=0.079 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (519)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (519)
.....+..+-.+|+.+++....-.|-.+ .|.....|..++.....+|++++|.-+|.++++..
T Consensus 175 ay~tL~~IyEqrGd~eK~l~~~llAAHL----------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~------- 237 (895)
T KOG2076|consen 175 AYYTLGEIYEQRGDIEKALNFWLLAAHL----------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN------- 237 (895)
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHHhc----------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-------
Confidence 3667788899999999999888777655 56666899999999999999999999999999875
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
|......+..+.+|.+.|+...|...|.+.+..... .+-..........+..+...++-+.|.+.++.++....
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~---~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~--- 311 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP---VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK--- 311 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc---
Confidence 333455778899999999999999999999887421 11123344455668888888888999999999987321
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------------HHH-------------H-----
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK----------------------IYT-------------K----- 319 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------~~~-------------~----- 319 (519)
.......++.++.++.....++.|......... ++. .
T Consensus 312 ---~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 312 ---DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred ---ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 222334556677788888888887766554433 000 0
Q ss_pred ----------------hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 010063 320 ----------------VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383 (519)
Q Consensus 320 ----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~ 383 (519)
.......+....+..++..+...|++.+|+.++....... +. .....|..+|.||
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-------~~--~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-------GY--QNAFVWYKLARCY 459 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-------cc--cchhhhHHHHHHH
Confidence 0000112345568889999999999999999998876541 11 1155789999999
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063 384 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (519)
Q Consensus 384 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (519)
..+|.+++|++.|++++.. .|+...+...|+.++..+|++++|.+.+++..
T Consensus 460 ~~l~e~e~A~e~y~kvl~~--------~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLIL--------APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhhHHHHHHHHHHHHhc--------CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999984 56677889999999999999998888777654
No 63
>PLN03077 Protein ECB2; Provisional
Probab=99.70 E-value=2.7e-14 Score=149.74 Aligned_cols=153 Identities=14% Similarity=0.071 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (519)
+|+.+...|...|+.++|+++|+++.+. ...|+.. ++..+...+.+.|+.++|..+|++..+.. ..
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd~~----T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi 621 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVES-----GVNPDEV----TFISLLCACSRSGMVTQGLEYFHSMEEKY-----SI 621 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCcc----cHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CC
Confidence 3445555555555555555555554432 1122221 22334445555555555555555544221 01
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010063 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 490 (519)
.|+ ...|..+..++.+.|++++|.+.+++.- ..|+ ..+|..|-..+...|+.+.|....++.+++
T Consensus 622 ~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~---------~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l---- 686 (857)
T PLN03077 622 TPN-LKHYACVVDLLGRAGKLTEAYNFINKMP---------ITPD-PAVWGALLNACRIHRHVELGELAAQHIFEL---- 686 (857)
T ss_pred CCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC---------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Confidence 222 2445555666666666666665555431 1122 223444444555556666555555555443
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 491 FGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 491 ~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
.++++ ..+..|+++|...|+|.
T Consensus 687 -~p~~~-----~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 687 -DPNSV-----GYYILLCNLYADAGKWD 708 (857)
T ss_pred -CCCCc-----chHHHHHHHHHHCCChH
Confidence 23333 34778899999888874
No 64
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.69 E-value=3.3e-13 Score=143.45 Aligned_cols=306 Identities=13% Similarity=0.072 Sum_probs=228.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (519)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (519)
..+..+...|++++|..+++++++... .........+...+|.++...|++++|...++++.......+.... .
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~-~ 530 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELP-----LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY-A 530 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCC-----CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH-H
Confidence 355667889999999999999987411 1112234556788999999999999999999999988776544333 3
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
..++..+|.++...|++++|...+++++...........+.....+..+|.++...|++++|...+.+++.+.....
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~--- 607 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ--- 607 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---
Confidence 44678899999999999999999999999987754333343445567789999999999999999999999876432
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV-GMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
.......+..+|.++...|++++|...+.++..+..... ..... ..........+...|+.+.|...+.......
T Consensus 608 ~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~-- 683 (903)
T PRK04841 608 PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR--YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE-- 683 (903)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc--ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC--
Confidence 223456777899999999999999999999988765431 11111 1111112344556899999988876644310
Q ss_pred hccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (519)
.............++.++...|++++|...+++++...+... .....+.++..+|.++...|+.++|...+.++
T Consensus 684 ----~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g--~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 684 ----FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR--LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred ----CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111112223346789999999999999999999999865542 34466778889999999999999999999999
Q ss_pred HHHHHH
Q 010063 442 LDIMTK 447 (519)
Q Consensus 442 l~~~~~ 447 (519)
+++...
T Consensus 758 l~la~~ 763 (903)
T PRK04841 758 LKLANR 763 (903)
T ss_pred HHHhCc
Confidence 998754
No 65
>PLN03077 Protein ECB2; Provisional
Probab=99.69 E-value=5.8e-14 Score=147.25 Aligned_cols=353 Identities=11% Similarity=0.028 Sum_probs=210.0
Q ss_pred CCCchhhhhhhhhhhhhhccccCcchHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH-------------------
Q 010063 88 FSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAV------------------- 148 (519)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~------------------- 148 (519)
+...++...+..+++....+ ...........+.+.|++++|+++|.++...-
T Consensus 232 y~k~g~~~~A~~lf~~m~~~---------d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPRR---------DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred HhcCCCHHHHHHHHhcCCCC---------CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 33444455556665554421 11224445566778888888888888765420
Q ss_pred -----HHHH--hcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHH
Q 010063 149 -----KEQI--NAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEK 221 (519)
Q Consensus 149 -----~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (519)
++.. ...........+++.+...|...|++++|.++|+++.. ++ ...|+.+...|.+.|++++
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---------~d-~~s~n~li~~~~~~g~~~~ 372 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---------KD-AVSWTAMISGYEKNGLPDK 372 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CC-eeeHHHHHHHHHhCCCHHH
Confidence 0000 00001122345666677777777777777777766421 11 1236677777777777777
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCC
Q 010063 222 SMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG 301 (519)
Q Consensus 222 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 301 (519)
|+.+|++..+. ...++ ..++..+-..+...|++++|.+++..+.+. .......+++.+...|.+.|
T Consensus 373 A~~lf~~M~~~---g~~Pd----~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-------g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 373 ALETYALMEQD---NVSPD----EITIASVLSACACLGDLDVGVKLHELAERK-------GLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHHHHh---CCCCC----ceeHHHHHHHHhccchHHHHHHHHHHHHHh-------CCCcchHHHHHHHHHHHHcC
Confidence 77777765432 11222 223444445666677777777777666543 12233567778888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHH-------
Q 010063 302 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN------- 374 (519)
Q Consensus 302 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------- 374 (519)
++++|.+.|++..+ ++ ..+|+.+...|...|++++|+.+|+++... ..|+...+..
T Consensus 439 ~~~~A~~vf~~m~~----------~d-~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~------~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 439 CIDKALEVFHNIPE----------KD-VISWTSIIAGLRLNNRCFEALIFFRQMLLT------LKPNSVTLIAALSACAR 501 (857)
T ss_pred CHHHHHHHHHhCCC----------CC-eeeHHHHHHHHHHCCCHHHHHHHHHHHHhC------CCCCHhHHHHHHHHHhh
Confidence 88888888876422 22 236777888888888888888888887532 1233222211
Q ss_pred ------------------------HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccC
Q 010063 375 ------------------------MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430 (519)
Q Consensus 375 ------------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 430 (519)
..+.+...|.+.|+.++|...|++. .+ ...+|+.+...|...|+
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----------~~-d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----------EK-DVVSWNILLTGYVAHGK 569 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----------CC-ChhhHHHHHHHHHHcCC
Confidence 1234557777788888887777653 11 23567778888888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH
Q 010063 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLV 510 (519)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 510 (519)
.++|+++|++..+. ...|+. .++..+-..+...|+.++|..+|++..+.. .-.|+. ..+..+..+
T Consensus 570 ~~~A~~lf~~M~~~------g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~~---~~y~~lv~~ 634 (857)
T PLN03077 570 GSMAVELFNRMVES------GVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITPNL---KHYACVVDL 634 (857)
T ss_pred HHHHHHHHHHHHHc------CCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCCch---HHHHHHHHH
Confidence 88888888876652 112332 345556667777888888888887776432 112322 335556666
Q ss_pred HHHhhhc
Q 010063 511 WFCLLLY 517 (519)
Q Consensus 511 ~~~lg~~ 517 (519)
+.+.|+.
T Consensus 635 l~r~G~~ 641 (857)
T PLN03077 635 LGRAGKL 641 (857)
T ss_pred HHhCCCH
Confidence 6666653
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=7.1e-15 Score=134.46 Aligned_cols=208 Identities=14% Similarity=0.144 Sum_probs=181.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
-+..|..+++.|+..+|.-.|+.++.. +|.++++|..||.+....++-..|+..+++++++. |
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkq----------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-------P 350 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQ----------DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-------P 350 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhh----------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------C
Confidence 355788899999999999999999988 99999999999999999999999999999999875 6
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-----------hcCC----CC------------------H--HHH
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES-----------RYGK----TS------------------I--LLV 245 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~----~~------------------~--~~~ 245 (519)
....++..||..|...|.-.+|+.++.+-+..... ..+. .+ + .-.
T Consensus 351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP 430 (579)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence 66778999999999999999999999887654200 0000 00 0 124
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (519)
.+...||.+|...|+|++|+++|+.|+.. .|.....|+.||-.+..-.+.++|+..|++|+++ .
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------q 494 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------Q 494 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------C
Confidence 56778999999999999999999999986 6788899999999999999999999999999996 5
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
|...++.+|||..++.+|.|++|.++|-.|+.+.++
T Consensus 495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 888899999999999999999999999999999876
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=9.6e-14 Score=121.68 Aligned_cols=299 Identities=14% Similarity=0.076 Sum_probs=231.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (519)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (519)
..+....-.++...|...+--+-. ...-+.....+..+|.+++..|++++|+..|+++..+. |..
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~--------~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-------py~ 265 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHD--------NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-------PDN 265 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHh--------hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-------hhh
Confidence 344444555555555554332211 22256778889999999999999999999999987654 777
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
....-..|..+...|+++.-..+....+...+. ...-++--+...+...++..|+.+-+++++.
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~--------ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~-------- 329 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY--------TASHWFVHAQLLYDEKKFERALNFVEKCIDS-------- 329 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc--------chhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------
Confidence 777778888899999998877777666655321 1333445577788899999999999999986
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
.+.....+...|.++...|+.++|+-.|+.|..+ .|....+|..|-..|...|++.||......+++.+...
T Consensus 330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s 401 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS 401 (564)
T ss_pred CcccchHHHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence 5556788888999999999999999999999886 36677899999999999999999999999999886542
Q ss_pred ccCCCCchHHHHHHHHHH-HHHHH-cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063 363 NYMSLDDSIMENMRIDLA-ELLHI-VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (519)
+.++..+| .++.. ----++|..++++++.+ .|....+-..+|.++...|.+..++.++++
T Consensus 402 ----------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 402 ----------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred ----------hhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 33434443 33332 22347899999998874 677788888999999999999999999999
Q ss_pred HHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.+..+ ++ ......||.++...+.+++|.++|..|+.+.
T Consensus 464 ~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 464 HLIIF--------PD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhc--------cc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99853 22 2457889999999999999999999998753
No 68
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-14 Score=127.40 Aligned_cols=291 Identities=15% Similarity=0.077 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (519)
.+.......+..++...+|..|+..+..|+++ .|..+..|.+.+.+++..|+|++|.-..+...++...
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~----------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~- 115 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM----------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG- 115 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh----------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-
Confidence 44555777888899999999999999999998 7777888999999999999999999988887766422
Q ss_pred CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHH--------HHHHHhcCC--CCHHHHHHHHHHHHHHhhcCCHHHHH
Q 010063 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVI--------NVLESRYGK--TSILLVTSLLGMAKVLGSIGRAKKAV 265 (519)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~ 265 (519)
........+.++...++..+|...++..- ...+..... ..|........-+.|+...|++++|.
T Consensus 116 ------~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 116 ------FSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred ------ccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 22245566777777777777766554211 111111111 12444556667789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHH
Q 010063 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG----ENDGRVGMAMCSLAHAKCA 341 (519)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~ 341 (519)
..--..+++ ++....++..-|.+++..++.+.|+..|++++.+-..... ...+.....+..-|.-.++
T Consensus 190 ~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 190 SEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred HHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 887777765 4556788888999999999999999999999986322110 0123455667777899999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 010063 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL 421 (519)
Q Consensus 342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 421 (519)
.|++.+|.+.|.+++.+.+ .+....+..|.+.+.+..+.|+..+|+.-.+.++.+ ++....++..-
T Consensus 262 ~G~y~~A~E~Yteal~idP------~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~r 327 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDP------SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRR 327 (486)
T ss_pred ccchhHHHHHHHHhhcCCc------cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHH
Confidence 9999999999999999833 234455778899999999999999999999999985 56778899999
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHH
Q 010063 422 AASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
|.++..+++|++|.+.|+++++..
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998853
No 69
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.7e-14 Score=132.01 Aligned_cols=267 Identities=16% Similarity=0.141 Sum_probs=187.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010063 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV 245 (519)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 245 (519)
+..|..+++.|+..+|.-.|+.++.-. |..+.+|..||.+....++-..|+..+++++++ +|...
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nl 353 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNL 353 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccH
Confidence 456888889999999999998887543 888888999999999999999999999999886 35557
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc--CCC-ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR--GTE-SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (519)
.++..||..|...|.-.+|..++.+-+....... ... .+.... ...-......+..-.++|-.+.. ..
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~---~~-- 424 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAAR---QL-- 424 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHH---hC--
Confidence 7888999999999999999999888876421000 000 000000 00000000001111222222221 11
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
.......+...||.+|...|+|++|+.+|+.|+.. .|.+ ..+|+.||-.+....+.++|+..|++|+++
T Consensus 425 -~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-------~Pnd---~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 425 -PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-------KPND---YLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred -CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-------CCch---HHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 11134557788999999999999999999999987 3333 456799999999999999999999999986
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHhcCChHH
Q 010063 403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS--ISFPMLHLGITLYHLNRDKE 475 (519)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~ 475 (519)
.|...++.++||..+..+|.|++|.++|-.|+.+.++..+..... .-.++..|=.++...++.+-
T Consensus 494 --------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 494 --------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred --------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 577889999999999999999999999999999987743322211 11233334455555566553
No 70
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.8e-13 Score=124.39 Aligned_cols=308 Identities=13% Similarity=0.101 Sum_probs=235.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010063 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV 245 (519)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 245 (519)
..-|...+..|+|+.|+.+|..++.+. |.....+.+...+|...|+|++|+.--.+..++ .|...
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~-------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--------~p~w~ 70 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLS-------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--------NPDWA 70 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccC-------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--------CCchh
Confidence 445778889999999999999999876 333445778899999999999999988888775 46778
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc----------------------------------------------
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR---------------------------------------------- 279 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------------------------- 279 (519)
..|..+|..+.-.|+|++|+..|.+.++......
T Consensus 71 kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~ 150 (539)
T KOG0548|consen 71 KGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVK 150 (539)
T ss_pred hHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHH
Confidence 9999999999999999999999988765311000
Q ss_pred -----------------------------C-------------------C------------CChh------hHHHHHHH
Q 010063 280 -----------------------------G-------------------T------------ESAD------LVLPLFSL 293 (519)
Q Consensus 280 -----------------------------~-------------------~------------~~~~------~~~~~~~l 293 (519)
+ + +... .+.....+
T Consensus 151 ~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 151 ILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred HHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 0 0 0000 12345668
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 010063 294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 373 (519)
Q Consensus 294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 373 (519)
|...+...+++.|+..|..++++. ....-+++.+-+|...|.+.+.+....++++...+. ..+...+.
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~---rad~klIa 298 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL---RADYKLIA 298 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH---HHHHHHHH
Confidence 888888888999999999999873 333467788999999999999999888888765542 22233455
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH--hh----------------CCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010063 374 NMRIDLAELLHIVGRGQEGRELLEECLLITEK--YK----------------GKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (519)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (519)
.+...+|..|...++++.|+.+|++++...+. .. .-..|..+.--..-|..++..|+|..|+
T Consensus 299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 299 KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHH
Confidence 66667888999999999999999998865432 10 0123444555556699999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhh
Q 010063 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLL 515 (519)
Q Consensus 436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg 515 (519)
..|.+++. ..|+....|.+.|.+|..+|++..|+.-.+.++++ +|.. ...|..=|.++..+.
T Consensus 379 ~~YteAIk--------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~--~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 379 KHYTEAIK--------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNF--IKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHHHh--------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchH--HHHHHHHHHHHHHHH
Confidence 99999887 34888899999999999999999999999999886 2333 345666688888777
Q ss_pred hcc
Q 010063 516 LYK 518 (519)
Q Consensus 516 ~~k 518 (519)
+|.
T Consensus 441 ~yd 443 (539)
T KOG0548|consen 441 EYD 443 (539)
T ss_pred HHH
Confidence 763
No 71
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=4.9e-13 Score=127.35 Aligned_cols=302 Identities=11% Similarity=-0.004 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (519)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (519)
+.....-|......|+++.|.+.+.++.+.. |.....+...|.+...+|+++.|..++.++.+.. +++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~-------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~ 151 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA-------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GND 151 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcC
Confidence 3344566777889999999999998876543 2222235677899999999999999999987542 221
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
. ..+....+.++...|++++|...+++.++. .|....++..++.++...|++++|.+.+.+..+..
T Consensus 152 ~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~---- 217 (409)
T TIGR00540 152 N--ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG---- 217 (409)
T ss_pred c--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC----
Confidence 1 122334589999999999999999998876 46666888999999999999999999999888641
Q ss_pred CCCChhHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010063 322 GENDGRVG-MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (519)
Q Consensus 322 ~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (519)
..++... ........-....+..+++.+.+.++.....+ ..+.....+..++..+...|++++|.+.+++++
T Consensus 218 -~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 218 -LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 1222222 11212222223334444455566655544211 111124456789999999999999999999998
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHH
Q 010063 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (519)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (519)
+.. ++++..... ..........++.+++.+.++++++. .|++|. ...+..+|.++.+.|++++|.++|
T Consensus 291 ~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 291 KKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN-----VDDKPK-CCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred hhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh-----CCCChh-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 853 122211101 11223334567888898888888872 234442 267789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063 481 LEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY 517 (519)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~ 517 (519)
+++..... +|+.. .+..+|.++..+|+.
T Consensus 359 e~a~a~~~------~p~~~---~~~~La~ll~~~g~~ 386 (409)
T TIGR00540 359 KNVAACKE------QLDAN---DLAMAADAFDQAGDK 386 (409)
T ss_pred HHhHHhhc------CCCHH---HHHHHHHHHHHcCCH
Confidence 96444321 23331 144889999998875
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.65 E-value=7.5e-13 Score=124.87 Aligned_cols=321 Identities=13% Similarity=0.048 Sum_probs=213.8
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
+|+.+.++..+|..+...|+.+.+...+.++...... ...........+..+...|++++|...++++++..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---- 73 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA----RATERERAHVEALSAWIAGDLPKALALLEQLLDDY---- 73 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence 5677888999999999999999998888777665532 12233345667889999999999999999998752
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
++++ .++.. +..+...|++..+.....+++.. ..+.+|.....+..+|.++...|++++|+..+++++++
T Consensus 74 -P~~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~- 143 (355)
T cd05804 74 -PRDL---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL- 143 (355)
T ss_pred -CCcH---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 2222 33333 55555666655555555555543 23456777888889999999999999999999999986
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (519)
.|.....+..+|.++...|++++|+.++++++.... .++......+..+|.++...|++++|+..++
T Consensus 144 -------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 144 -------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD------CSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred -------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC------CCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344456788899999999999999999999988632 1223334456789999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHH--HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHH
Q 010063 398 ECLLITEKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 475 (519)
Q Consensus 398 ~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 475 (519)
+++... +..+..... ...+...+...|....+..+ +.+........ +. +.....-...+.++...|+.++
T Consensus 211 ~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 211 THIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHH
Confidence 985421 111112211 11223334444543333332 22222211110 11 2222222467888889999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 476 AEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 476 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
|...++......+.. +...............+.++...|+++
T Consensus 283 a~~~L~~l~~~~~~~-~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 283 LDKLLAALKGRASSA-DDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHHhcc-CchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 999999988877652 111111112344556788888888764
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.8e-13 Score=118.80 Aligned_cols=268 Identities=15% Similarity=0.143 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (519)
....+...++.++..|++++|+..|+++.-+ +|.....+...|..+...|+++.-..+......+.+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~----------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--- 297 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA----------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--- 297 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC----------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh---
Confidence 4455777889999999999999999999877 888889999999999999999998887777666542
Q ss_pred CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (519)
..+.-|+.-+...+...++..|+.+-+++++.- +....++...|..+...|+.++|+-.|+.|..+
T Consensus 298 ----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--------~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-- 363 (564)
T KOG1174|consen 298 ----YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--------PRNHEALILKGRLLIALERHTQAVIAFRTAQML-- 363 (564)
T ss_pred ----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--------cccchHHHhccHHHHhccchHHHHHHHHHHHhc--
Confidence 223336667788889999999999999998852 333567778899999999999999999999887
Q ss_pred HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHH-CCCHHHHHHHHHH
Q 010063 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAKCA-NGNAEEAVELYKK 354 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~ 354 (519)
.|....+|..|-.+|...|++.+|....+.+++.+ +..+.++..+| .++.. -.--++|..++++
T Consensus 364 ------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 364 ------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred ------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 46667899999999999999999999999998865 34455666665 44333 2234789999999
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHH
Q 010063 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434 (519)
Q Consensus 355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 434 (519)
++.+ .|....+-..+|.++...|.++.++.++++.+..+. + ...+..||.++...+.+.+|
T Consensus 430 ~L~~----------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--------D-~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 430 SLKI----------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--------D-VNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred hhcc----------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--------c-cHHHHHHHHHHHHhhhHHHH
Confidence 9886 233344557899999999999999999999998542 2 24677899999999999999
Q ss_pred HHHHHHHHHH
Q 010063 435 ERLLRICLDI 444 (519)
Q Consensus 435 ~~~~~~al~~ 444 (519)
.++|..|+.+
T Consensus 491 m~~y~~ALr~ 500 (564)
T KOG1174|consen 491 MEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhc
Confidence 9999999984
No 74
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.64 E-value=1e-12 Score=112.55 Aligned_cols=283 Identities=16% Similarity=0.077 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (519)
.....++.++..|+..|+-..|+.-+.+++++ .|+-..+....|.+++.+|++++|+.-|..++......
T Consensus 70 ~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel----------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 70 NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL----------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 45566899999999999999999999999998 88888899999999999999999999999988754211
Q ss_pred CCCch--------HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 010063 196 KDDEP--------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267 (519)
Q Consensus 196 ~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 267 (519)
+.... .-...+......+...|++..|+.+....+++ .|.-+..+...+.||...|++..|+.-
T Consensus 140 ~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~D 211 (504)
T KOG0624|consen 140 GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHD 211 (504)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 11100 01122344455667789999999999988876 355677788889999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH---------HHH
Q 010063 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL---------AHA 338 (519)
Q Consensus 268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---------a~~ 338 (519)
++.+-++ ..+....++.++.+++..|+.+.++...++++++ .++|......|-.+ +.-
T Consensus 212 lk~askL--------s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 212 LKQASKL--------SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred HHHHHhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9988776 3445678899999999999999999999999986 33333322222222 233
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhccCCCC-chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063 339 KCANGNAEEAVELYKKALRVIKDSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417 (519)
Q Consensus 339 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 417 (519)
....++|.++++..++.++. .|. .+........+..|+...|++.+|+....++++ ..|+.+.+
T Consensus 279 ~ie~~~~t~cle~ge~vlk~-------ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--------~d~~dv~~ 343 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKN-------EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--------IDPDDVQV 343 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhc-------CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--------cCchHHHH
Confidence 44567777777777776654 222 334444556678899999999999999999887 46777889
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 418 LLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
+...|..|.....|+.|+.-|++|.+.
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999884
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.63 E-value=2.3e-12 Score=121.98 Aligned_cols=310 Identities=16% Similarity=0.105 Sum_probs=224.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhc----CC-------hHHHHHHHHHHHhhhhh
Q 010063 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI----GD-------LKFVQSLLDMMSGIVDS 194 (519)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~-------~~~A~~~~~~~~~~~~~ 194 (519)
.+.-..|.+++++++.++++....... ..-.+..+..+|.+|..+ .. ..++++.++++.+.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~-----~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--- 473 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQR-----SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--- 473 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhh-----hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---
Confidence 455678899999999999999654332 445566777788777442 22 23455555555544
Q ss_pred cCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (519)
++.+| .+.+.++.-|..+++.+.|..+.++++++.. ...+.++..++.++...+++.+|+.+...+++-
T Consensus 474 -d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-------~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 474 -DPTDP---LVIFYLALQYAEQRQLTSALDYAREALALNR-------GDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred -CCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34445 4588999999999999999999999998732 223677889999999999999999999999887
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHhCCC-------------------------------------------HHHHHHHHH
Q 010063 275 LELNRGTESADLVLPLFSLGSLFIKEGK-------------------------------------------AVDAESVFS 311 (519)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------------------------------~~~A~~~~~ 311 (519)
.....+ ....-..+-...++ ..+|.+...
T Consensus 543 ~~~N~~--------l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr 614 (799)
T KOG4162|consen 543 FGDNHV--------LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSR 614 (799)
T ss_pred hhhhhh--------hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhH
Confidence 544211 01111111112233 334444444
Q ss_pred HHHHHHHHh----------------cCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 010063 312 RILKIYTKV----------------YGENDGR--VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 373 (519)
Q Consensus 312 ~al~~~~~~----------------~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 373 (519)
++....... .+++++. ....|...+..+...++.++|..++.++-.+. +...
T Consensus 615 ~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~----------~l~~ 684 (799)
T KOG4162|consen 615 YLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID----------PLSA 684 (799)
T ss_pred HHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc----------hhhH
Confidence 444333211 0111111 22345567888889999999999999988773 4456
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH--HHHHHHHHHHHhcCC
Q 010063 374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER--LLRICLDIMTKTVGP 451 (519)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~ 451 (519)
..++..|.++..+|++.+|.+.|..++.+ +|+...+...+|.++.+.|+..-|.. ++..++++
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~------- 749 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL------- 749 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-------
Confidence 77889999999999999999999999885 34445677889999999998887877 89999884
Q ss_pred CCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063 452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (519)
Q Consensus 452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (519)
+|....+|+.+|.++.++|+.++|.++|..++++-+
T Consensus 750 -dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 750 -DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred -CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 466778899999999999999999999999999764
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.63 E-value=5.4e-12 Score=119.55 Aligned_cols=336 Identities=19% Similarity=0.167 Sum_probs=241.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA 204 (519)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 204 (519)
...+...|++..+.+.|++++.. .....+.|+.++.+|...|.-..|+.+++......+. .++...
T Consensus 330 t~al~~~g~f~~lae~fE~~~~~----------~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~----ps~~s~ 395 (799)
T KOG4162|consen 330 TFALSRCGQFEVLAEQFEQALPF----------SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ----PSDISV 395 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHh----------hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC----CCcchH
Confidence 34567789999999999998776 4556678999999999999999999999887765532 222223
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc----CC-------HHHHHHHHHHHHH
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----GR-------AKKAVEIYHRVIT 273 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~-------~~~A~~~~~~al~ 273 (519)
.+..-..++...+..++++.+..+++..... ........++..+|.+|..+ .. ..++++.++++++
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~---~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGG---QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhh---hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 3344445666789999999999999997633 23334456677777777543 22 3455555666555
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010063 274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK 353 (519)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (519)
. .+....+.+.++.-|..+++.+.|..+.++++++ +..+.+.+|..++.++...+++.+|+.+.+
T Consensus 473 ~--------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-------~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 473 F--------DPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-------NRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred c--------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-------cCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4 3334478888999999999999999999999986 233455677888888888888888887777
Q ss_pred HHHHHHHhhc----------------------------------------------------------------------
Q 010063 354 KALRVIKDSN---------------------------------------------------------------------- 363 (519)
Q Consensus 354 ~al~~~~~~~---------------------------------------------------------------------- 363 (519)
.+++-+..+.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 6665443300
Q ss_pred ---------------------cCCCCch--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 010063 364 ---------------------YMSLDDS--IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420 (519)
Q Consensus 364 ---------------------~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 420 (519)
..++++. .....+...+..+...++.++|..++.++-.+ .+.....++.
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~ 689 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYL 689 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHH
Confidence 0000000 01112234566666777777777777777654 4666788999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHH--HHHHHHHHHHHhcCCCCCcc
Q 010063 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK--LVLEALYIREIAFGKDSLPV 498 (519)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~ 498 (519)
.|.++...|+..+|.+.|..++.+ +|+...+...+|.++...|+..-|.. .+..++++ ++.++
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-----dp~n~-- 754 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-----DPLNH-- 754 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-----CCCCH--
Confidence 999999999999999999999984 34445666889999999999888888 89998875 35555
Q ss_pred hhhHHHHHHHHHHHHhhhcc
Q 010063 499 GKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 499 ~~~~~~~~l~~~~~~lg~~k 518 (519)
.+|++||.++..+||.+
T Consensus 755 ---eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 755 ---EAWYYLGEVFKKLGDSK 771 (799)
T ss_pred ---HHHHHHHHHHHHccchH
Confidence 44999999999999864
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=4.6e-12 Score=120.00 Aligned_cols=289 Identities=13% Similarity=0.100 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (519)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (519)
+...+.-|......||+++|++...+..... +.|.. .+...+......|+++.|..++.++.+.. ++.
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-----~~p~l--~~llaA~aA~~~g~~~~A~~~l~~A~~~~-----~~~ 151 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHA-----EQPVV--NYLLAAEAAQQRGDEARANQHLERAAELA-----DND 151 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc-----cchHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----Ccc
Confidence 3344566777778999999997777644321 22332 13444666689999999999999997642 221
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
. .......+.++...|++++|...+++..+. .|....++..++.+|...|++++|...+.+..+..
T Consensus 152 -~-~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~---- 217 (398)
T PRK10747 152 -Q-LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH---- 217 (398)
T ss_pred -h-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC----
Confidence 1 122223489999999999999999999876 56667888999999999999999999998887642
Q ss_pred CCCChhHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 010063 322 GENDGRVGM-----AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 396 (519)
Q Consensus 322 ~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 396 (519)
..++.... ++..+........+-+...++++..-+. .+++ ..+...++..+...|+.++|...+
T Consensus 218 -~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-------~~~~---~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 218 -VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-------TRHQ---VALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-------HhCC---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 11222211 2222222222222223333333322111 1222 345577999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHH
Q 010063 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476 (519)
Q Consensus 397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 476 (519)
+++++. +.++..... .+. ...++.+++++..++.++ .+|+....+..+|.++...|++++|
T Consensus 287 ~~~l~~------~~~~~l~~l---~~~--l~~~~~~~al~~~e~~lk--------~~P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 287 LDGLKR------QYDERLVLL---IPR--LKTNNPEQLEKVLRQQIK--------QHGDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHHhc------CCCHHHHHH---Hhh--ccCCChHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 998862 233432222 222 345899999999988876 4677777889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063 477 EKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY 517 (519)
Q Consensus 477 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~ 517 (519)
.++|+++++.. |+. ..+..++.++..+|+.
T Consensus 348 ~~~le~al~~~--------P~~---~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 348 SLAFRAALKQR--------PDA---YDYAWLADALDRLHKP 377 (398)
T ss_pred HHHHHHHHhcC--------CCH---HHHHHHHHHHHHcCCH
Confidence 99999999853 332 2244788888888874
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1e-13 Score=121.56 Aligned_cols=285 Identities=15% Similarity=0.051 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (519)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (519)
.+.-....|..++...+|.+|+..+..++... |..+..|.+.+..+...|++++|.-..++.+++-
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k------- 113 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK------- 113 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheecC-------
Confidence 34445566788889999999999999999886 4446678899999999999999999998887752
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH--------HHHHHhcCC--CChhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI--------TILELNRGT--ESADLVLPLFSLGSLFIKEGKAVDAESVF 310 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 310 (519)
+.....+...+.++...++..+|...++..- ...+..... ..|........-+.++...|++++|...-
T Consensus 114 -d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 114 -DGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred -CCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 2223456667777777777777776665221 111111111 12444555566788999999999999877
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHH---------HHHHHHHHH
Q 010063 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM---------ENMRIDLAE 381 (519)
Q Consensus 311 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---------~~~~~~la~ 381 (519)
-..+++ ++....++...|.++...++.+.|+..+++++.+ +|++... ...+..-|+
T Consensus 193 ~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-------dpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 193 IDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-------DPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred HHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-------ChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 776664 4566778888899999999999999999999987 4444333 333455677
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 010063 382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461 (519)
Q Consensus 382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 461 (519)
-..+.|++.+|.+.|.+++.+... +....+..|.+.|.+...+|+..+|+.-.+.++.+ ++..+.++.
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall 325 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALL 325 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHH
Confidence 788999999999999999987533 34456778999999999999999999999999985 577889999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 462 HLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.-|.++...+++++|.+.|+++++..
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999865
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.58 E-value=8.2e-13 Score=116.46 Aligned_cols=182 Identities=14% Similarity=0.049 Sum_probs=147.8
Q ss_pred CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
..+.....+..+|..+...|++++|+..+++++... ++++....++..+|.++...|++++|+..++++++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--- 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--- 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Confidence 345667889999999999999999999999998853 344556678899999999999999999999999987
Q ss_pred hccCCCCchHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhhCCCChhHHH--------------HHH
Q 010063 362 SNYMSLDDSIMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVT--------------HLL 419 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~ 419 (519)
.|+++....+++.+|.++... |++++|++.+++++.... +++.... ...
T Consensus 100 ----~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~~~~~~~~~~~~~~ 170 (235)
T TIGR03302 100 ----HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-----NSEYAPDAKKRMDYLRNRLAGKEL 170 (235)
T ss_pred ----CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHHHHHHHH
Confidence 344555455678889999876 789999999999887532 2222111 124
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
.+|.+|...|++.+|+..+++++... +++|....++..+|.++...|++++|..+++....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67899999999999999999999853 55677888999999999999999999998877654
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=1.1e-12 Score=115.52 Aligned_cols=180 Identities=14% Similarity=0.089 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
+.....++.+|..+...|++++|+..+++++.. .++++....++..+|.++...|++++|+..++++++..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~---- 100 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH---- 100 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----
Confidence 445778899999999999999999999999876 23445556788999999999999999999999999863
Q ss_pred CCCChhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH--------------HHHH
Q 010063 322 GENDGRVGMAMCSLAHAKCAN--------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENM--------------RIDL 379 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--------------~~~l 379 (519)
++++....++..+|.++... |++++|++.+++++... |++.....+ ...+
T Consensus 101 -p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 101 -PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred -cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666788899999876 88999999999998773 333222111 2367
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
|.++...|++.+|+..+++++... ++.|....++..+|.++...|++++|..+++....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 889999999999999999998764 34577788999999999999999999998877654
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.57 E-value=1.4e-11 Score=114.64 Aligned_cols=318 Identities=14% Similarity=0.093 Sum_probs=221.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
++..+...+..++|...+...++.+.. .|++++++...|..+..+|+-++|......++... +
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k----------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-------~ 72 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKK----------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-------L 72 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh----------CCccchhHHhccchhhcccchHHHHHHHHHHhccC-------c
Confidence 777888889999999999999998885 88889999999999999999999999888876532 3
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
....+|..+|.++....+|++|+.+|+.|+.+ .++....+..++.....+++++-....-.+.++.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql------ 138 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL------ 138 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------
Confidence 33457899999999999999999999999986 2344677888888888999998888877777775
Q ss_pred CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC-------------------------------CC---h
Q 010063 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE-------------------------------ND---G 326 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~---~ 326 (519)
.|.....|...+..+...|++..|....+............ .. .
T Consensus 139 --~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~ 216 (700)
T KOG1156|consen 139 --RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV 216 (700)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH
Confidence 34555677788888888888888887776665543211000 00 0
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH-HHHHHHH----------HHHHHc-CC------
Q 010063 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME-NMRIDLA----------ELLHIV-GR------ 388 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~la----------~~~~~~-g~------ 388 (519)
+........+.++.+.+++++|...|...+... |+..... .....+| .+|... .+
T Consensus 217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 111123344667788888888888888777652 2221111 1111111 011100 00
Q ss_pred -------------hHHHH--------------------H---------HHHHHHHHHHHhhCC-------------CChh
Q 010063 389 -------------GQEGR--------------------E---------LLEECLLITEKYKGK-------------EHPS 413 (519)
Q Consensus 389 -------------~~~A~--------------------~---------~~~~al~~~~~~~~~-------------~~~~ 413 (519)
+.+.. . +.++.+..+....+. ....
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 00000 0 111111111111111 1223
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
..++++.++.-+-..|+++.|..+...|+. ..|...+.+..-|.++...|+.++|..++.++.++
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 456778889999999999999999999987 46888899999999999999999999999988764
No 82
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=6.9e-11 Score=110.03 Aligned_cols=309 Identities=13% Similarity=0.030 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (519)
..+++.+..+.+.+.++-|+..|..+++. .|....++...+..-..-|..++-..+++++....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv----------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~------ 580 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV----------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC------ 580 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh----------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------
Confidence 34667777888888888888888888887 56666677777777777888888888899888766
Q ss_pred chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (519)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (519)
|.....|...+..++..|+...|...+.++++.. |.....+..--.+.....+++.|..++.++...
T Consensus 581 -pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--------pnseeiwlaavKle~en~e~eraR~llakar~~---- 647 (913)
T KOG0495|consen 581 -PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--------PNSEEIWLAAVKLEFENDELERARDLLAKARSI---- 647 (913)
T ss_pred -CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc----
Confidence 3333446777888888899999999999988752 223445555567778889999999999998763
Q ss_pred cCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
..+..+++.-+.+...+++.++|+.+++++++. .|.....|..+|+++..+++.+.|.+.|...++.
T Consensus 648 -----sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 648 -----SGTERVWMKSANLERYLDNVEEALRLLEEALKS--------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred -----CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 234567777888888999999999999999985 4677778999999999999999999999988776
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010063 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (519)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (519)
+.. . ...+..|+.+-...|+.-.|...++++.- .+|.....|......-.+.|+.+.|..+.
T Consensus 715 cP~-------~---ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 715 CPN-------S---IPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred CCC-------C---chHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 422 1 23457789999999999999999998764 45666677777778888999999999999
Q ss_pred HHHHHHHHHhc--------CCCC--------------cchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 439 RICLDIMTKTV--------GPDD--------------QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 439 ~~al~~~~~~~--------~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.+|++-+.... -..+ .....++..+|..+....++++|.++|.+++.+.
T Consensus 777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 98887442110 0000 1122345778999999999999999999999854
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=3.1e-10 Score=104.65 Aligned_cols=329 Identities=13% Similarity=0.110 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (519)
..++.........|+|++|.....+.+.. .|+...++..--.+.++.++|++|+...+.-....
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~----------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~------ 76 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSI----------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL------ 76 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhc----------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh------
Confidence 34677777888999999999999988876 56777788888888999999999986655422111
Q ss_pred chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---
Q 010063 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL--- 275 (519)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 275 (519)
......+.-+.|.++.+..++|+..++-+ .+.+ ..++...|.+++.+|+|++|.+.|+...+-.
T Consensus 77 --~~~~~~fEKAYc~Yrlnk~Dealk~~~~~--------~~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 77 --VINSFFFEKAYCEYRLNKLDEALKTLKGL--------DRLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred --hcchhhHHHHHHHHHcccHHHHHHHHhcc--------cccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 11111267888999999999999988721 1122 3345567899999999999999998774311
Q ss_pred --------------------HHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh-------hH
Q 010063 276 --------------------ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-------RV 328 (519)
Q Consensus 276 --------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~ 328 (519)
.+............++|.+.++...|+|.+|++.+++++.++++.+..++. +.
T Consensus 144 ~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 144 QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence 011111223356778999999999999999999999999999877644332 24
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHH-HHHHH-----------
Q 010063 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE-GRELL----------- 396 (519)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~----------- 396 (519)
..+...++.++..+|+.++|...|...+... ..|.+..+.+-+||..+-....=++. ++..+
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~------~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~ 297 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKRN------PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhc------CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence 5567788999999999999999999887752 34555555554555433222111110 00000
Q ss_pred --------------------------HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063 397 --------------------------EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (519)
Q Consensus 397 --------------------------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (519)
.++.++... .....|..............+...+.+|.+++.+.-+
T Consensus 298 l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~------- 369 (652)
T KOG2376|consen 298 LSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD------- 369 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-------
Confidence 001111111 1112222221111122222222245555555544333
Q ss_pred CCCcch-hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 010063 451 PDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 491 (519)
Q Consensus 451 ~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 491 (519)
.+|.. ..+...++.+...+|+++.|++.+...++.....+
T Consensus 370 -~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~ 410 (652)
T KOG2376|consen 370 -GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI 410 (652)
T ss_pred -cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Confidence 34443 55677889999999999999999996665444433
No 84
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.48 E-value=1.1e-11 Score=111.53 Aligned_cols=226 Identities=15% Similarity=0.071 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (519)
..+..+...|..|...|++++|...|.++.++..+.. +....+..+...+.+|... ++++|+.+++++++++....
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G- 108 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG- 108 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-
Confidence 4455666778889999999999999999999988743 3455677788888888766 99999999999999998762
Q ss_pred CCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063 323 ENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (519)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (519)
.....+.++..+|.+|... |++++|+++|++|.+++... ..+.....++..+|.++...|+|++|++.|++...
T Consensus 109 -~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 109 -RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE----GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp --HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3345688899999999999 99999999999999999873 35566677889999999999999999999999876
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh--cCChHHHHHH
Q 010063 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKL 479 (519)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~ 479 (519)
...... ......-..+...+.++...|++..|...+++...... +-.+..-......|-.++.. ...+++|+.-
T Consensus 184 ~~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~---~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 184 KCLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP---SFASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp TCCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST---TSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred Hhhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 432210 01223445567788899999999999998888765321 11123334445555555543 2334444444
Q ss_pred HH
Q 010063 480 VL 481 (519)
Q Consensus 480 ~~ 481 (519)
|.
T Consensus 260 ~d 261 (282)
T PF14938_consen 260 YD 261 (282)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 85
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.48 E-value=1.1e-11 Score=111.58 Aligned_cols=213 Identities=15% Similarity=0.053 Sum_probs=155.6
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (519)
..+..+...|..|...|++++|...|.++.+...+. .+....+..+...+.++... ++++|+.++++++.++.+
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~--- 106 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE--- 106 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh---
Confidence 335566677888999999999999999999998874 23345667778878887666 999999999999999987
Q ss_pred CCCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 365 MSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
...+...+.++..+|.+|... |++++|+++|++|+++++... .......++..+|.++...|+|++|++.|++...
T Consensus 107 -~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 107 -AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp -CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677788999999999999 999999999999999998752 3344567888999999999999999999999876
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 010063 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWF 512 (519)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (519)
...... ......-..+...+.++...|+...|...+++..... +..........+..|-.++.
T Consensus 184 ~~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~-----~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 184 KCLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD-----PSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp TCCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS-----TTSTTSHHHHHHHHHHHHHH
T ss_pred Hhhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCcHHHHHHHHHHHHHH
Confidence 432110 0112233455677889999999999988888876543 22233333445555555543
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.3e-09 Score=100.57 Aligned_cols=335 Identities=13% Similarity=0.089 Sum_probs=210.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh---------
Q 010063 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV--------- 192 (519)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------- 192 (519)
++.+.+.++.+..++|+..++- + ++....++...|.+++++|+|++|..+|+...+..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~-~------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r 149 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKG-L------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR 149 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhc-c------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 6888999999999999998872 1 23334567778899999999999999998764311
Q ss_pred ---------------hhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHH
Q 010063 193 ---------------DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLG 250 (519)
Q Consensus 193 ---------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~ 250 (519)
+..+.........+++.+.++...|+|.+|++.+++++.++++.+..++. .+..+...
T Consensus 150 ~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ 229 (652)
T KOG2376|consen 150 ANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ 229 (652)
T ss_pred HHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 11111222244568999999999999999999999999988776543322 45567778
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHH-HHHHH--------HHHHH------
Q 010063 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVF--------SRILK------ 315 (519)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~--------~~al~------ 315 (519)
++.++..+|+.++|...|...+..- ..|.+..+.+-+||-.+-....-++. ++..+ +..+.
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q 305 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ 305 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999887752 23455556666665443322222220 00000 00000
Q ss_pred -----------------------HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHH
Q 010063 316 -----------------------IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 372 (519)
Q Consensus 316 -----------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 372 (519)
+..+ .....|..................+.+|.+++...-+. .+.. .
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~-------~p~~--s 375 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSAS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG-------HPEK--S 375 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc-------CCch--h
Confidence 0000 11112221111111111122222344444444443222 2222 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG--KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (519)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (519)
..+...++.+...+|+++.|++.+...+........ ...|.+. ..+-..+...++.+-|...+.+|+..+.....
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V---~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV---GAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH---HHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 335567889999999999999999855533322221 1233332 23445677778888899999999998876543
Q ss_pred CCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
. .+.....+..++.+-.+.|+-++|...+++.++..
T Consensus 453 ~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 453 G-SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred c-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 3 35555667778888888999999999999988743
No 87
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.46 E-value=6e-10 Score=103.95 Aligned_cols=275 Identities=14% Similarity=0.062 Sum_probs=221.5
Q ss_pred CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063 155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (519)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (519)
+....+.-.++..-+..+...+.++-|...|..+++.+ |..-.+|...+..-...|..++-..++++++....
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p 581 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP 581 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 44566667778888888888999999999998888876 44444577777777778888888999999987643
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010063 235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314 (519)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 314 (519)
..-..+...+.-+...|+...|..++.++.+. +|..-.++..-..+.....+++.|..+|.++.
T Consensus 582 --------kae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 582 --------KAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred --------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 22344556678888889999999999999886 45556677777778888999999999999987
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 010063 315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394 (519)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (519)
.. ..+..++..-+.+...+++.++|+.+++++++.+ +.....+..+|.++.++++.+.|.+
T Consensus 646 ~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----------p~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 646 SI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF----------PDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred cc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC----------CchHHHHHHHhHHHHHHHHHHHHHH
Confidence 63 2344567777888889999999999999999984 2335567889999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChH
Q 010063 395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK 474 (519)
Q Consensus 395 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 474 (519)
.|...+.. -|...-.+..|+.+-...|+.-.|...++++.- .+|.....+.....+-.+.|+.+
T Consensus 707 aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 707 AYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHH
Confidence 99887764 355566788899999999999999999998875 45777777777888888999999
Q ss_pred HHHHHHHHHHHHH
Q 010063 475 EAEKLVLEALYIR 487 (519)
Q Consensus 475 ~A~~~~~~a~~~~ 487 (519)
.|...+.+|++-+
T Consensus 771 ~a~~lmakALQec 783 (913)
T KOG0495|consen 771 QAELLMAKALQEC 783 (913)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998754
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.45 E-value=4.7e-11 Score=116.17 Aligned_cols=363 Identities=15% Similarity=0.101 Sum_probs=233.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
...++-.+...++...|+..++.++.. +|....++..+|.+|...|.+..|++.|.++..+. |
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~----------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-------P 627 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRT----------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-------P 627 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcC----------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-------c
Confidence 334677788899999999999999988 89999999999999999999999999999987765 5
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
....+.+..+......|+|.+|+..+...+...... .+.....+.++..++..+...|=+.+|.++++++++.+.-...
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e-~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE-RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 555557788889999999999999999887765432 1122356777888888888888888888888887765431110
Q ss_pred ----------------------------------------------CCC----------------hhhHHHHHHHHHHHH
Q 010063 281 ----------------------------------------------TES----------------ADLVLPLFSLGSLFI 298 (519)
Q Consensus 281 ----------------------------------------------~~~----------------~~~~~~~~~la~~~~ 298 (519)
++. ...+..++++|..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 000 011234667776665
Q ss_pred h--------CCCHHHHHHHHHHHHHHHHHhc----------CC---------------CChhHHHHHHHHHHHHHHCCCH
Q 010063 299 K--------EGKAVDAESVFSRILKIYTKVY----------GE---------------NDGRVGMAMCSLAHAKCANGNA 345 (519)
Q Consensus 299 ~--------~g~~~~A~~~~~~al~~~~~~~----------~~---------------~~~~~~~~~~~la~~~~~~g~~ 345 (519)
. +.+...|+..+.+++.+..... |. ..|.....|.|+|.++....++
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccH
Confidence 5 2233467888888877643210 00 0112222344444455555555
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 010063 346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425 (519)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 425 (519)
+-|...+.++..+ .|.....+...+.+....|+.-++...+...-+...... ..+. ...+..--...
T Consensus 867 E~A~~af~~~qSL----------dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g--ka~~-f~Yw~c~te~h 933 (1238)
T KOG1127|consen 867 EHAEPAFSSVQSL----------DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG--KAKK-FQYWLCATEIH 933 (1238)
T ss_pred HHhhHHHHhhhhc----------CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc--ccch-hhHHHHHHHHH
Confidence 5555555444433 111123344455555555655555555554333321110 1111 12233334445
Q ss_pred HhccCHHHHHHHHHHHHH--HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHH
Q 010063 426 SRSKNFVEAERLLRICLD--IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFC 503 (519)
Q Consensus 426 ~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 503 (519)
...|++++-+...+++-. +.-+.+-..+|+...++...|.....++.+++|.+.+.+.+.+.+..+..+...+.
T Consensus 934 ~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva---- 1009 (1238)
T KOG1127|consen 934 LQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA---- 1009 (1238)
T ss_pred HhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----
Confidence 566666666555544322 11112224578888999999999999999999999999999999988876665552
Q ss_pred HHHHHHHHHHhhhcc
Q 010063 504 FVLFGLVWFCLLLYK 518 (519)
Q Consensus 504 ~~~l~~~~~~lg~~k 518 (519)
--+.|.++..+|+|.
T Consensus 1010 k~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFE 1024 (1238)
T ss_pred hhhhhhhhhhhcchh
Confidence 336788888888763
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=1.3e-09 Score=104.38 Aligned_cols=314 Identities=14% Similarity=0.077 Sum_probs=198.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
++=.+..+...|++++|++.++..... ..+....+-..|.++..+|++++|...+...+... |
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~----------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-------P 69 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ----------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-------P 69 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh----------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------C
Confidence 445667778999999999999876544 56677788899999999999999999999988764 3
Q ss_pred HHHHHHHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHHH
Q 010063 201 LLDAILLHMGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV-EIYHRVITI 274 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~ 274 (519)
+....+..+..+..... +.+.-..+|++....+.+ ..+-..+...+..-.++.... .++...+.
T Consensus 70 dn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~---------s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~- 139 (517)
T PF12569_consen 70 DNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR---------SDAPRRLPLDFLEGDEFKERLDEYLRPQLR- 139 (517)
T ss_pred CcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc---------ccchhHhhcccCCHHHHHHHHHHHHHHHHh-
Confidence 33333555555542222 344445555544332211 111111121222212232222 22222221
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cC------CCChh-HHHHHHHHHHHHHHCCCH
Q 010063 275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV--YG------ENDGR-VGMAMCSLAHAKCANGNA 345 (519)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~------~~~~~-~~~~~~~la~~~~~~g~~ 345 (519)
..++....++-.+|....+..-...++.......+.. +. ...|. ..++++.+|..|...|++
T Consensus 140 ---------KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~ 210 (517)
T PF12569_consen 140 ---------KGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY 210 (517)
T ss_pred ---------cCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH
Confidence 1233455556666664433333333333333222111 00 12233 467889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 010063 346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425 (519)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 425 (519)
++|+++++++++. .|.....+...|.++...|++.+|.+.++.|..+- ...-.+-...+..+
T Consensus 211 ~~Al~~Id~aI~h----------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--------~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 211 EKALEYIDKAIEH----------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--------LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--------hhhHHHHHHHHHHH
Confidence 9999999999986 34446778999999999999999999999987642 22223444567788
Q ss_pred HhccCHHHHHHHHHHHHHHHHHhcC-C-CCc---chhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcC
Q 010063 426 SRSKNFVEAERLLRICLDIMTKTVG-P-DDQ---SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492 (519)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~~~~~~-~-~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 492 (519)
.+.|+.++|...+..- .+... + .+. ...+.....|.+|.+.|++..|++.|..+.+.+.....
T Consensus 273 LRa~~~e~A~~~~~~F----tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLF----TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHCCCHHHHHHHHHhh----cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 8999999998876543 22211 1 011 11233346799999999999999999999999987754
No 90
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=7.5e-09 Score=91.45 Aligned_cols=305 Identities=18% Similarity=0.140 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (519)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (519)
.-...|..-+..|+|.+|.....++-+. .+.....+..-+.+--.+||++.+-.++.++.+.. .+
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~----------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~ 150 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEH----------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----GD 150 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhc----------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----CC
Confidence 3455666667899999999998886554 44445556666778889999999999999987763 12
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
+... +....+.....+|+++.|..-..++++.. +.+ ..++.....+|...|++.+...+..+..+.- ..
T Consensus 151 ~~l~-v~ltrarlll~~~d~~aA~~~v~~ll~~~-----pr~---~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l 219 (400)
T COG3071 151 DTLA-VELTRARLLLNRRDYPAARENVDQLLEMT-----PRH---PEVLRLALRAYIRLGAWQALLAILPKLRKAG--LL 219 (400)
T ss_pred chHH-HHHHHHHHHHhCCCchhHHHHHHHHHHhC-----cCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CC
Confidence 3333 37788999999999999999999888762 333 4556677899999999999988887664421 11
Q ss_pred CCCChhhHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGS--LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
++++ ..-+-+.+. ++...++-..+..+.+---+.-++. ..+|.. ...++.-+...|+.++|.+..+++++
T Consensus 220 --~~~e-~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~l---~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 220 --SDEE-AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPEL---VVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred --ChHH-HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChhH---HHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1222 222222221 1222223222322111111111111 123443 34567788899999999999999988
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010063 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437 (519)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 437 (519)
.. .|+. . ..+.. ...-++...=++..++.++ .+|+....+..||.++.+.+.|.+|..+
T Consensus 292 ~~-------~D~~-L----~~~~~-~l~~~d~~~l~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 292 RQ-------WDPR-L----CRLIP-RLRPGDPEPLIKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred hc-------cChh-H----HHHHh-hcCCCCchHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHHHH
Confidence 62 2222 1 11111 2245666666666666555 3455557888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063 438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (519)
Q Consensus 438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (519)
++.+++.. .....+..+|.++.++|+.++|...+++++....
T Consensus 351 leaAl~~~---------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 351 LEAALKLR---------PSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHhcC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 99988732 2235678899999999999999999999996553
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=7.6e-09 Score=96.80 Aligned_cols=313 Identities=15% Similarity=0.082 Sum_probs=205.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (519)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (519)
..|..+....+|++|+.+|+.|+.+ .+++..++..++....++|+++.....-.+.++.. |..
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~----------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ 142 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKI----------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQ 142 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhh
Confidence 3455567778899999999999998 88888999999999999999998887777766554 555
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
...|...+..+.-.|++..|....+...................+......+....|.+++|.+.+..--.-
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-------- 214 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-------- 214 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--------
Confidence 556888999999999999999988877665542222222233444555566666777776666665443221
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH----------------------
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC---------------------- 340 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------------------- 340 (519)
..+.....-..+.++...+++++|...+...+... |+....+..+-.++.
T Consensus 215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 11223334455667777777777777776665531 111111111111100
Q ss_pred -----------------------------HC-------------CCHHHHHHHHHHHHHHHHhhc----cCC-------C
Q 010063 341 -----------------------------AN-------------GNAEEAVELYKKALRVIKDSN----YMS-------L 367 (519)
Q Consensus 341 -----------------------------~~-------------g~~~~A~~~~~~al~~~~~~~----~~~-------~ 367 (519)
.. .+..+. .++++.+..+.... ... .
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccC
Confidence 00 011111 12222222222110 000 1
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
.+....+++..++.-+...|+++.|..+.+.|+. ..|...+.+..-|.++...|+.++|...+.++.++
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--- 434 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--- 434 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---
Confidence 3445567778899999999999999999999986 57888899999999999999999999999998874
Q ss_pred hcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
+.++.. +-..-|....+.++.++|.+...+--.
T Consensus 435 ----D~aDR~-INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 435 ----DTADRA-INSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred ----cchhHH-HHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 333332 122567777888999999887765543
No 92
>PLN02789 farnesyltranstransferase
Probab=99.41 E-value=4e-10 Score=101.81 Aligned_cols=219 Identities=13% Similarity=0.032 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHhcC
Q 010063 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~ 280 (519)
...++..+-.++...+++++|+..+.+++.+ +|....++...+.++...| ++++++..+.+++..
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~------ 101 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED------ 101 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH------
Confidence 3334444555566778999999999999986 3555778889999999998 689999999999986
Q ss_pred CCChhhHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 281 TESADLVLPLFSLGSLFIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
+|....+++..+.++...|+. ++++.++++++++ +|....++...+.++...|++++|++++.++++.
T Consensus 102 --npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 102 --NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred --CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 566677899999999888874 6788888888874 5777889999999999999999999999999987
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh----
Q 010063 359 IKDSNYMSLDDSIMENMRIDLAELLHIV---GRG----QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR---- 427 (519)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---- 427 (519)
. +.+ ..+++..+.++... |.+ ++++.+..+++.+ .|....++..++.++..
T Consensus 172 d-------~~N---~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~ 233 (320)
T PLN02789 172 D-------VRN---NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEA 233 (320)
T ss_pred C-------CCc---hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcc
Confidence 2 222 44667777777665 333 4677777777764 45556788888888877
Q ss_pred ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc
Q 010063 428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 470 (519)
Q Consensus 428 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 470 (519)
.++..+|.+.+.+++. ..+....++..|+.+|...
T Consensus 234 l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 234 LVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 4556778887777655 2355566778889988763
No 93
>PLN02789 farnesyltranstransferase
Probab=99.40 E-value=3.9e-10 Score=101.89 Aligned_cols=208 Identities=13% Similarity=0.037 Sum_probs=161.4
Q ss_pred HHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010063 172 YVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (519)
Q Consensus 172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (519)
+...+.+++|+..+.+++.+. |....++...+.++...| ++++++..+.+++.. +|....++..
T Consensus 47 l~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHH
Confidence 445678899999999998775 666778999999999988 689999999999875 3444667888
Q ss_pred HHHHHhhcCCH--HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010063 251 MAKVLGSIGRA--KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (519)
Q Consensus 251 la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (519)
.+.++...|+. ++++.++.++++. +|....++...+.++...|++++|+.++.++++. ++..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N 175 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRN 175 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCc
Confidence 88888888874 6788899899876 6777899999999999999999999999999985 4666
Q ss_pred HHHHHHHHHHHHHC---CCH----HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHH
Q 010063 329 GMAMCSLAHAKCAN---GNA----EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLE 397 (519)
Q Consensus 329 ~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 397 (519)
..+++..+.+.... |.+ ++++.+..+++.. .|++ ..+++.++.++.. .++..+|.+.+.
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-------~P~N---~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-------NPRN---ESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-------CCCC---cCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 67888898888765 333 4677888888876 2333 3455777888877 345667888777
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 010063 398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428 (519)
Q Consensus 398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 428 (519)
+++. ..+....++..|+.+|...
T Consensus 246 ~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 246 EVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred Hhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 7655 2345556778888888763
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.36 E-value=2.9e-09 Score=104.06 Aligned_cols=234 Identities=12% Similarity=0.083 Sum_probs=184.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHH
Q 010063 131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG 210 (519)
Q Consensus 131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 210 (519)
+.+...|...+-+++.+ ++..+.++..+|.+|...-|...|...|.++.++. +..+.+.-..+
T Consensus 471 rK~~~~al~ali~alrl----------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-------atdaeaaaa~a 533 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRL----------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-------ATDAEAAAASA 533 (1238)
T ss_pred hhhHHHHHHHHHHHHhc----------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------chhhhhHHHHH
Confidence 44567777878777777 88889999999999999889999999999998775 44455567788
Q ss_pred HHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 010063 211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL 290 (519)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 290 (519)
..|....+++.|......+-+.... ......+..+|..|...+++..|+..++.+++. +|....++
T Consensus 534 dtyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W 599 (1238)
T KOG1127|consen 534 DTYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLW 599 (1238)
T ss_pred HHhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHH
Confidence 9999999999998874443332111 122234455899999999999999999999986 67778999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCch
Q 010063 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370 (519)
Q Consensus 291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 370 (519)
..+|.+|...|++..|++.|.++..+ .|......+..+.+....|+|.+|+..+...+...... .+...
T Consensus 600 ~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e---~~~q~ 668 (1238)
T KOG1127|consen 600 LGLGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE---RTGQN 668 (1238)
T ss_pred HHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 99999999999999999999999875 46666677888999999999999999999988776542 22233
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (519)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (519)
..+.++..++..+...|=..+|..+++++++.+.-.
T Consensus 669 gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 669 GLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 445666777777777888889999999888876443
No 95
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.36 E-value=5.6e-09 Score=101.56 Aligned_cols=413 Identities=12% Similarity=0.029 Sum_probs=255.3
Q ss_pred hcccccccccccccccchhhHHHHhhhcccccCCCCCcchhhhhhhccC----CCCchhhhhhhhhhhhhhccccCcchH
Q 010063 39 ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSG----FSAPNDFARSKTLHDHSSNLWDGMNDF 114 (519)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (519)
..+.+.+...+.|+..|+++.+|+.+.|.+.++..+...+......-.- ...-+.|-|++.+|.......-.. ..
T Consensus 264 eVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~-~~ 342 (894)
T COG2909 264 EVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR-EL 342 (894)
T ss_pred HHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc-cc
Confidence 4577889999999999999999999999999999998877777765332 334456778888776554211111 11
Q ss_pred HHHHHH-HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhh
Q 010063 115 ERQLLE-LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (519)
Q Consensus 115 ~~~~~~-l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (519)
...... ....+..+...|..++|++..-.|-+ ....+..+...+.-....++..--....+.. -.
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d-----------~~~aa~lle~~~~~L~~~~~lsll~~~~~~l---P~ 408 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGLPSEAIDHALAAGD-----------PEMAADLLEQLEWQLFNGSELSLLLAWLKAL---PA 408 (894)
T ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHHhCCC-----------HHHHHHHHHhhhhhhhcccchHHHHHHHHhC---CH
Confidence 122333 44455778899999999986554321 2223334444555555555554333332221 00
Q ss_pred hcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (519)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (519)
.+-..+|.. ....++......++.+|.....++........ .......+......|.+....|++++|+++.+.++
T Consensus 409 ~~l~~~P~L---vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al 485 (894)
T COG2909 409 ELLASTPRL---VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL 485 (894)
T ss_pred HHHhhCchH---HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 000112322 34456677788999999999988876554310 01112334445556788889999999999999998
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH--HH
Q 010063 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA--VE 350 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~ 350 (519)
...... .......++..+|.+..-.|++++|..+..++.++.++.. ...-...+....+.++..+|+...| +.
T Consensus 486 ~~L~~~---~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~~~~ 560 (894)
T COG2909 486 VQLPEA---AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAEQEK 560 (894)
T ss_pred Hhcccc---cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 875332 2344567888999999999999999999999999987762 2233445666778899999943333 22
Q ss_pred HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccC
Q 010063 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430 (519)
Q Consensus 351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 430 (519)
.+...-..... ..+.+.....++..+..++.+ ++.+..-....+++..... +........+..|+.++...|+
T Consensus 561 ~~~~~~~q~l~---q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gd 633 (894)
T COG2909 561 AFNLIREQHLE---QKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGD 633 (894)
T ss_pred HHHHHHHHHhh---hcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCC
Confidence 22222222111 122233333344444444443 6666666666665543321 1111222333589999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchh-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063 431 FVEAERLLRICLDIMTKTVGPDDQSIS-FPMLHLGITLYHLNRDKEAEKLVLEA 483 (519)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 483 (519)
+++|...+.+......... .+++.. .+..........+|+.++|.....+.
T Consensus 634 l~~A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 634 LDKALAQLDELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 9999999999888765421 233332 22223334445689999998888774
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=1.2e-09 Score=104.64 Aligned_cols=303 Identities=13% Similarity=0.047 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (519)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (519)
.+++.....++...|++++|+.+++...... .+...++...|.++...|++++|...|...++..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I-------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-------- 68 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQI-------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-------- 68 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------
Confidence 4566677888899999999999998754433 4445567889999999999999999999988762
Q ss_pred HHHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHH-HHHHHHHHHH
Q 010063 242 ILLVTSLLGMAKVLGSIG-----RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILK 315 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~ 315 (519)
|+....+..+..+..... +.+.-..+|++....+.+. .+...+...+..-..|.. +..++...+.
T Consensus 69 Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s---------~~~~rl~L~~~~g~~F~~~~~~yl~~~l~ 139 (517)
T PF12569_consen 69 PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS---------DAPRRLPLDFLEGDEFKERLDEYLRPQLR 139 (517)
T ss_pred CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc---------cchhHhhcccCCHHHHHHHHHHHHHHHHh
Confidence 333555555555553222 3455555565544332111 111111111111112222 2233333322
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC-------CCCchHHHHHHHHHHHHHHHcCC
Q 010063 316 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-------SLDDSIMENMRIDLAELLHIVGR 388 (519)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~ 388 (519)
...|. ...++-.+|....+.+-...++............. ...+....++++.+|..|...|+
T Consensus 140 -------KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~ 209 (517)
T PF12569_consen 140 -------KGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD 209 (517)
T ss_pred -------cCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCC
Confidence 12333 44555555654433333333333333322221111 12234456788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 010063 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY 468 (519)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 468 (519)
+++|+++.+++++ ..|...+.+...|.++...|++.+|.+.++.|..+- .....+-...+..+.
T Consensus 210 ~~~Al~~Id~aI~--------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--------~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 210 YEKALEYIDKAIE--------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--------LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--------hhhHHHHHHHHHHHH
Confidence 9999999999998 467788999999999999999999999999987741 222233456678888
Q ss_pred hcCChHHHHHHHHHHHHHHHHhcCCCCCcch---hhHHHHHHHHHHHHhhhcc
Q 010063 469 HLNRDKEAEKLVLEALYIREIAFGKDSLPVG---KLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 469 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~lg~~k 518 (519)
+.|+.++|.+.+..-..--. + ...+.. ..+.....|.+|...|+|.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~---~-~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDV---D-PLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCC---C-cccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999988765532110 0 011111 1233456699999998873
No 97
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=2.3e-09 Score=92.84 Aligned_cols=234 Identities=14% Similarity=0.072 Sum_probs=134.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327 (519)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 327 (519)
...+|.+++..-.|.+|++.|.+++. ++|.....-..++.+|+++.-++-+.+.+.--+. ..|+
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--------q~pd 217 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--------QFPD 217 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--------hCCC
Confidence 44667777778888888888888876 4666677777889999999988888776655544 2444
Q ss_pred HHHHHHHHHHHHHH--CCCHHHHHH--H-------HHHHHHHHHhhc-----------cCCCCchHHHHHHHHHHHHHHH
Q 010063 328 VGMAMCSLAHAKCA--NGNAEEAVE--L-------YKKALRVIKDSN-----------YMSLDDSIMENMRIDLAELLHI 385 (519)
Q Consensus 328 ~~~~~~~la~~~~~--~g~~~~A~~--~-------~~~al~~~~~~~-----------~~~~~~~~~~~~~~~la~~~~~ 385 (519)
...+.+..+...++ .|+..+++. + |..+-.+.+... .+++--..+..+..+|+..|.+
T Consensus 218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~ 297 (557)
T KOG3785|consen 218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN 297 (557)
T ss_pred cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc
Confidence 44455555544443 233322211 0 001111111000 0111112234566889999999
Q ss_pred cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCC-----c------
Q 010063 386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD-----Q------ 454 (519)
Q Consensus 386 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~------ 454 (519)
+|+..+|..+.+. -.|....-+...|.+....|+--...+.++-|-..++-+.+... |
T Consensus 298 q~dVqeA~~L~Kd-----------l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 298 QNDVQEAISLCKD-----------LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred cccHHHHHHHHhh-----------cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 9999999887764 23444455666777777777766666666655554433221110 0
Q ss_pred ------------------------chhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH
Q 010063 455 ------------------------SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLV 510 (519)
Q Consensus 455 ------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 510 (519)
..-....++|+++...|++.+|.+.|-+.- |++-... ..-...|+.|
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is-------~~~ikn~--~~Y~s~LArC 437 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-------GPEIKNK--ILYKSMLARC 437 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-------Chhhhhh--HHHHHHHHHH
Confidence 000123467778888888888877765442 2221111 1223467888
Q ss_pred HHHhhhc
Q 010063 511 WFCLLLY 517 (519)
Q Consensus 511 ~~~lg~~ 517 (519)
|...|..
T Consensus 438 yi~nkkP 444 (557)
T KOG3785|consen 438 YIRNKKP 444 (557)
T ss_pred HHhcCCc
Confidence 8776654
No 98
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.35 E-value=6.7e-12 Score=88.84 Aligned_cols=78 Identities=29% Similarity=0.338 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010063 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 489 (519)
||..+.++.++|.+|..+|++++|+.+|++++++ .+..|++++.++.++.++|.++..+|++++|+++++++++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 5788999999999999999999999999999999 66667788889999999999999999999999999999999864
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.32 E-value=2.8e-10 Score=113.07 Aligned_cols=169 Identities=11% Similarity=0.031 Sum_probs=145.8
Q ss_pred HHHHHHHH-HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 119 LELFNEVK-SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 119 ~~l~~~~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
+.+..++. ..-..|....+...+-++++..+. -+..+.++..+|.+....|.+++|+..++.++++.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~----- 116 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRR-------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF----- 116 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-----
Confidence 44555553 345667777777777777777665 66778999999999999999999999999999887
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (519)
|+...+...++.++.+.+++++|+..+++++.. .|+....++.+|.++...|++++|+..|++++.-
T Consensus 117 --Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--- 183 (694)
T PRK15179 117 --PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--- 183 (694)
T ss_pred --CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---
Confidence 777778999999999999999999999999885 3555788999999999999999999999999873
Q ss_pred hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
+|....++.++|.++...|+.++|...|+++++..
T Consensus 184 -----~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 -----HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 56778899999999999999999999999999864
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.30 E-value=4.5e-10 Score=111.61 Aligned_cols=156 Identities=9% Similarity=0.084 Sum_probs=132.7
Q ss_pred CChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010063 176 GDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 255 (519)
Q Consensus 176 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 255 (519)
|....+...+-++..... +.+....++..||.+....|.+++|..+++.++++. |+...+..+++.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------Pd~~~a~~~~a~~L 130 (694)
T PRK15179 63 AAVHKPAAALPELLDYVR----RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------PDSSEAFILMLRGV 130 (694)
T ss_pred hhhcchHhhHHHHHHHHH----hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------CCcHHHHHHHHHHH
Confidence 333344444444444442 235556789999999999999999999999999873 55578889999999
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 010063 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 335 (519)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 335 (519)
.+.+++++|+..+++++.. .|+.+..++.+|.++...|++++|+..|++++. .+|+...++.++
T Consensus 131 ~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~ 194 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGW 194 (694)
T ss_pred HHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHH
Confidence 9999999999999999986 678899999999999999999999999999997 357777899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 336 AHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
|..+...|+.++|...|+++++..
T Consensus 195 a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 195 AQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999884
No 101
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=7.2e-08 Score=87.23 Aligned_cols=371 Identities=15% Similarity=0.093 Sum_probs=241.8
Q ss_pred HHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHhhhhh
Q 010063 118 LLELFNEVKSMIMMG--NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY-VYIGDLKFVQSLLDMMSGIVDS 194 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~ 194 (519)
...++..|..+...| +...++++++..... .....-.+.+...+|.++ ....+++.|...++++..+.+.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~-------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ 79 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQF-------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS 79 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhcc-------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence 344778888888888 888899888877654 222334566677777765 5578999999999999888777
Q ss_pred cCCCchHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHH----------------------------------------
Q 010063 195 LKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVL---------------------------------------- 233 (519)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~---------------------------------------- 233 (519)
++.-......+...++.+|.... .+..+...+++++++.
T Consensus 80 ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~ 159 (629)
T KOG2300|consen 80 IPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADH 159 (629)
T ss_pred cccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccch
Confidence 65543344445566666666655 5666666666666550
Q ss_pred --------------------------------------------------------------------------------
Q 010063 234 -------------------------------------------------------------------------------- 233 (519)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (519)
T Consensus 160 ~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ 239 (629)
T KOG2300|consen 160 ICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQ 239 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHH
Confidence
Q ss_pred --------------HHhcCCCCHHHH--------HHHHHHHHH--HhhcCCHHHHHHHHHHHHHHHHHhcCCC--Ch---
Q 010063 234 --------------ESRYGKTSILLV--------TSLLGMAKV--LGSIGRAKKAVEIYHRVITILELNRGTE--SA--- 284 (519)
Q Consensus 234 --------------~~~~~~~~~~~~--------~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~--- 284 (519)
++.++.+.+... .++..+-.+ -...|-+++|.++-++++...++....+ .+
T Consensus 240 ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srils 319 (629)
T KOG2300|consen 240 DSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILS 319 (629)
T ss_pred HHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 000111111100 011111111 1234667788888888877766654322 11
Q ss_pred -hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 285 -DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN--DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 285 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
.....+-.+..+-.-.|++.+|++-...+.+.+.+..++. ....+.....+|......|.++.|+..|..|.+...+
T Consensus 320 m~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~ 399 (629)
T KOG2300|consen 320 MFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES 399 (629)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH
Confidence 1123344566677778999999999999999887653211 1224556677888888899999999999999987543
Q ss_pred hccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-------ChhHHHHHHHHHHHHHhccCHHHH
Q 010063 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-------HPSFVTHLLNLAASYSRSKNFVEA 434 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A 434 (519)
....+.+-.++|..|.+.|+-+.-.+.++. . ++. ....+.+++..|...+.++++.||
T Consensus 400 -------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~----i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEa 464 (629)
T KOG2300|consen 400 -------IDLQAFCNLNLAISYLRIGDAEDLYKALDL----I----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEA 464 (629)
T ss_pred -------HHHHHHHHHhHHHHHHHhccHHHHHHHHHh----c----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 344566778999999998876544433332 1 222 112345667778888899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh
Q 010063 435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCL 514 (519)
Q Consensus 435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 514 (519)
...+.+.+++.... ....-....+..|+.+....|+..++.+..+-++++..++ +|++-. ......+-.+|...
T Consensus 465 K~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vq--Lws~si~~~L~~a~ 538 (629)
T KOG2300|consen 465 KRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQ--LWSSSILTDLYQAL 538 (629)
T ss_pred HHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHH--HHHHHHHHHHHHHh
Confidence 99999999976221 1123345566788999999999999999999999999876 444433 22233445555555
Q ss_pred hh
Q 010063 515 LL 516 (519)
Q Consensus 515 g~ 516 (519)
|+
T Consensus 539 g~ 540 (629)
T KOG2300|consen 539 GE 540 (629)
T ss_pred Cc
Confidence 54
No 102
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=1.1e-07 Score=85.79 Aligned_cols=337 Identities=11% Similarity=0.019 Sum_probs=201.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh--------
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV-------- 192 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------- 192 (519)
.+.-+..-++......|..++.+|+.+ -|..-..++.....--.+|+...|.++|++.....
T Consensus 110 WlkYae~Emknk~vNhARNv~dRAvt~----------lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~s 179 (677)
T KOG1915|consen 110 WLKYAEFEMKNKQVNHARNVWDRAVTI----------LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLS 179 (677)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHH
Confidence 334444445556666666666666655 34444445544444445566666665555444321
Q ss_pred ------------------hhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063 193 ------------------DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (519)
Q Consensus 193 ------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (519)
+..--.+|.... +...+..-...|+..-|...|++|++.... +..........|..
T Consensus 180 fI~fElRykeieraR~IYerfV~~HP~v~~-wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~f 253 (677)
T KOG1915|consen 180 FIKFELRYKEIERARSIYERFVLVHPKVSN-WIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEF 253 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHheecccHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHH
Confidence 111122344433 677777888889999999999999887532 23333444445555
Q ss_pred HhhcCCHHHHHHHHHHHHHHHH---------------HhcC---------------------CCChhhHHHHHHHHHHHH
Q 010063 255 LGSIGRAKKAVEIYHRVITILE---------------LNRG---------------------TESADLVLPLFSLGSLFI 298 (519)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~---------------~~~~---------------------~~~~~~~~~~~~la~~~~ 298 (519)
-..+..++.|.-+|+-|++... +..| .++|....++...-.+-.
T Consensus 254 Ee~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e 333 (677)
T KOG1915|consen 254 EERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEE 333 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5666777777777776665422 1111 234555667777777778
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 010063 299 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK---CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 375 (519)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 375 (519)
..|+.+.-.+.|++|+.-..... ......-.+|..+-.++ ....+.+.+.++|+.++++. +......+.+
T Consensus 334 ~~g~~~~Ire~yErAIanvpp~~-ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI------PHkkFtFaKi 406 (677)
T KOG1915|consen 334 SVGDKDRIRETYERAIANVPPAS-EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI------PHKKFTFAKI 406 (677)
T ss_pred hcCCHHHHHHHHHHHHccCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc------CcccchHHHH
Confidence 88999999999999987321100 00000111222222222 34788999999999999974 3345566677
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH--------------------------HHHhhCCCChhHHHHHHHHHHHHHhcc
Q 010063 376 RIDLAELLHIVGRGQEGRELLEECLLI--------------------------TEKYKGKEHPSFVTHLLNLAASYSRSK 429 (519)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~al~~--------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g 429 (519)
+...|....++.+...|...+-.|+.. +++.+ .-.|....++...|.+-..+|
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl-e~~Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL-EFSPENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH-hcChHhhHHHHHHHHHHHHhh
Confidence 777777777777777666665544432 22221 245677777888888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 430 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 430 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
+.+.|...|+-|++- ..-+.|... +......-...|.+++|..+|++.++..
T Consensus 486 dtdRaRaifelAi~q----p~ldmpell--wkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 486 DTDRARAIFELAISQ----PALDMPELL--WKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hHHHHHHHHHHHhcC----cccccHHHH--HHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 888888888877651 011222222 2333444456788888888888887754
No 103
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.28 E-value=4.3e-11 Score=84.68 Aligned_cols=78 Identities=31% Similarity=0.401 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
|+.++.++.++|.+|..+|++++|+.+|++++++ .+..|++++.++.++.++|.++...|++++|++++++++++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 4567889999999999999999999999999999 66667778889999999999999999999999999999998763
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.26 E-value=3.2e-10 Score=90.43 Aligned_cols=128 Identities=13% Similarity=0.043 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 010063 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428 (519)
Q Consensus 349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 428 (519)
..++++++++. |+ .+..+|.++...|++++|...|++++.+ .|....++..+|.++...
T Consensus 13 ~~~~~~al~~~-------p~------~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~ 71 (144)
T PRK15359 13 EDILKQLLSVD-------PE------TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMML 71 (144)
T ss_pred HHHHHHHHHcC-------HH------HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHH
Confidence 35677777762 11 1356899999999999999999999873 566778999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHH
Q 010063 429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFG 508 (519)
Q Consensus 429 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 508 (519)
|++++|+..|++++.+ +|....++.++|.++...|++++|+..|++++++. ++++.. +.+.|
T Consensus 72 g~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-----p~~~~~-----~~~~~ 133 (144)
T PRK15359 72 KEYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-----YADASW-----SEIRQ 133 (144)
T ss_pred hhHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHH-----HHHHH
Confidence 9999999999999983 46677888999999999999999999999999865 445433 56666
Q ss_pred HHHHHhh
Q 010063 509 LVWFCLL 515 (519)
Q Consensus 509 ~~~~~lg 515 (519)
.+...++
T Consensus 134 ~~~~~l~ 140 (144)
T PRK15359 134 NAQIMVD 140 (144)
T ss_pred HHHHHHH
Confidence 6665443
No 105
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.26 E-value=3.9e-09 Score=106.92 Aligned_cols=214 Identities=18% Similarity=0.130 Sum_probs=192.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCch
Q 010063 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370 (519)
Q Consensus 291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 370 (519)
...|......|.+.+|.+ .-+++......++.-+|..+..+..++.++...|++++|+..-.++.-+.++. .+.+++
T Consensus 936 ~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~--~g~ds~ 1012 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV--LGKDSP 1012 (1236)
T ss_pred hhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh--ccCCCH
Confidence 345566666788888888 88888888888888999999999999999999999999999999988777764 678888
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (519)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (519)
.....+.+++......++...|...+.++..+..-..++++|..+.+..+++.++...++++.|+.+.+.|+...++..+
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence 88889999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHH
Q 010063 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLF 507 (519)
Q Consensus 451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 507 (519)
+.+.....++..+++.....+++..|....+....++...+|++|..+.....+.++
T Consensus 1093 ~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~~ 1149 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLNL 1149 (1236)
T ss_pred ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHHH
Confidence 998899999999999999999999999999999999999999999988665433333
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.25 E-value=1.9e-10 Score=91.69 Aligned_cols=126 Identities=13% Similarity=0.050 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccc
Q 010063 138 IDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE 217 (519)
Q Consensus 138 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (519)
..++++++++ .|.. +..+|.++...|++++|...|+.++... |....++..+|.++...|
T Consensus 13 ~~~~~~al~~----------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 13 EDILKQLLSV----------DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHHc----------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHh
Confidence 4567777776 5554 5578999999999999999999988664 555677999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 010063 218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297 (519)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 297 (519)
++++|+..|++++.+ .|....+++++|.++...|++++|+..|++++++ .|.....+.+.|.+.
T Consensus 73 ~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 73 EYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQ 136 (144)
T ss_pred hHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH
Confidence 999999999999985 2444778999999999999999999999999987 455556666666654
Q ss_pred Hh
Q 010063 298 IK 299 (519)
Q Consensus 298 ~~ 299 (519)
..
T Consensus 137 ~~ 138 (144)
T PRK15359 137 IM 138 (144)
T ss_pred HH
Confidence 43
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.23 E-value=4.9e-09 Score=88.37 Aligned_cols=150 Identities=14% Similarity=0.192 Sum_probs=118.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010063 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 247 (519)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 247 (519)
-+..|+..|+++......+.... +. .-+...++.++++..+++++.. +|.....
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~---------~~---------~~~~~~~~~~~~i~~l~~~L~~--------~P~~~~~ 75 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD---------PL---------HQFASQQTPEAQLQALQDKIRA--------NPQNSEQ 75 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC---------cc---------ccccCchhHHHHHHHHHHHHHH--------CCCCHHH
Confidence 34568889998886444321110 00 0111366778888888888875 3444778
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH-HhCCC--HHHHHHHHHHHHHHHHHhcCCC
Q 010063 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF-IKEGK--AVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~ 324 (519)
+..+|.+|...|++++|+..|++++++ .|.....+..+|.++ ...|+ +++|...++++++.
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-------- 139 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-------- 139 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--------
Confidence 999999999999999999999999997 566788999999974 67787 59999999999985
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
+|....++.++|..+...|++++|+.+++++++..
T Consensus 140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56677799999999999999999999999999883
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.20 E-value=2.3e-09 Score=89.52 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=135.8
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
.|+...+ ..++..+...|+-+.+..+..+..... +....++..+|......|++.+|+..++++...
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence 6666666 888999999999999888887754332 333334556899999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
.|....++..+|.+|.+.|++++|..-|.+++++. +....+.+|+|..+.-.|+++.|..++..+...
T Consensus 130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~- 197 (257)
T COG5010 130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS- 197 (257)
T ss_pred ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 24447889999999999999999999999999983 445678999999999999999999999998762
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010063 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (519)
.+....+..|++.+....|++++|.....+
T Consensus 198 -------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 198 -------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred -------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 333455778999999999999999887654
No 109
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.18 E-value=4e-07 Score=80.82 Aligned_cols=288 Identities=14% Similarity=0.059 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH
Q 010063 163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI 242 (519)
Q Consensus 163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 242 (519)
.....-|..-+..|+|.+|++...+..+.. +.|.+ .+..-+..-.++|+++.+-.++.++-+.. ++
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~-----e~p~l--~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~-- 150 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHG-----EQPVL--AYLLAAEAAQQRGDEDRANRYLAEAAELA-----GD-- 150 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcC-----cchHH--HHHHHHHHHHhcccHHHHHHHHHHHhccC-----CC--
Confidence 334455666678999999999998865543 22333 45666778889999999999999887642 12
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (519)
.........+.+....|+++.|..-..++++. .|....++.....+|...|++.+...+..+.-+.. .
T Consensus 151 ~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~-- 218 (400)
T COG3071 151 DTLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--L-- 218 (400)
T ss_pred chHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--C--
Confidence 22445667899999999999999999999886 56667788888999999999999998887765521 1
Q ss_pred CCChhHHHHHHHHHHH--HHHCCCHHHHHH---HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063 323 ENDGRVGMAMCSLAHA--KCANGNAEEAVE---LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (519)
Q Consensus 323 ~~~~~~~~~~~~la~~--~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (519)
-+.....-+.+.+.. +...++-+.+.. +++..-... ..++. +...++.-+...|+.++|.+..+
T Consensus 219 -l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l-------r~~p~---l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 219 -LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL-------RNDPE---LVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred -CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh-------hcChh---HHHHHHHHHHHcCChHHHHHHHH
Confidence 122222222222221 222222222322 222211111 12222 22567888999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063 398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477 (519)
Q Consensus 398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 477 (519)
++++.. .++. +..+.. ...-+++..=++..++.+. .||+....+..||..+.+.+.+.+|.
T Consensus 288 ~~Lk~~------~D~~----L~~~~~-~l~~~d~~~l~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 288 DALKRQ------WDPR----LCRLIP-RLRPGDPEPLIKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HHHHhc------cChh----HHHHHh-hcCCCCchHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHH
Confidence 988742 2232 111111 2355677776666676665 34555577889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063 478 KLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY 517 (519)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~ 517 (519)
.+++.+++.. ++ +..+..+|.++..+|+.
T Consensus 349 ~~leaAl~~~--------~s---~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 349 EALEAALKLR--------PS---ASDYAELADALDQLGEP 377 (400)
T ss_pred HHHHHHHhcC--------CC---hhhHHHHHHHHHHcCCh
Confidence 9999888754 11 13467889999988874
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.16 E-value=1.2e-08 Score=86.02 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=116.2
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (519)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (519)
-+..|...|+++......++.. ++.. -+...++.++++..++++++. +|....
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~-------~~~~------------~~~~~~~~~~~i~~l~~~L~~--------~P~~~~ 74 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA-------DPLH------------QFASQQTPEAQLQALQDKIRA--------NPQNSE 74 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh-------Cccc------------cccCchhHHHHHHHHHHHHHH--------CCCCHH
Confidence 3556888899887644432111 1110 111367778999999998884 577778
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHHHHHhh
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL-HIVGR--GQEGRELLEECLLITEKYK 407 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~ 407 (519)
.|..+|.+|...|++++|+..|++++.+ .+++ ..++..+|.++ ...|+ +++|...++++++.
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-------~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~----- 139 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQL-------RGEN---AELYAALATVLYYQAGQHMTPQTREMIDKALAL----- 139 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----
Confidence 9999999999999999999999999997 3444 34568889875 67787 59999999999984
Q ss_pred CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
+|....++..+|..+...|++++|+.+++++++.
T Consensus 140 ---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 140 ---DANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred ---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666789999999999999999999999999985
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.16 E-value=9.5e-09 Score=103.16 Aligned_cols=234 Identities=12% Similarity=0.035 Sum_probs=161.3
Q ss_pred CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063 155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (519)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (519)
+.-.|....++..+...|...|++++|...++.++... |.....++.+|.++.+.+++.++... .++....
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~ 94 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL--NLIDSFS 94 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence 45578889999999999999999999999999877654 56666788999999999998888776 5555432
Q ss_pred HhcC-----------CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCH
Q 010063 235 SRYG-----------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA 303 (519)
Q Consensus 235 ~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 303 (519)
.... .+.+..-.+++.+|.||-.+|+.++|...|++++++ +|..+.+++++|..|... +.
T Consensus 95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hH
Confidence 2100 011223358889999999999999999999999987 477789999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 010063 304 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383 (519)
Q Consensus 304 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~ 383 (519)
++|+.++.+|+..+-..- ........|. ..+.....+++.=....++.+.. .........+.-+-..|
T Consensus 166 ~KA~~m~~KAV~~~i~~k--q~~~~~e~W~--k~~~~~~~d~d~f~~i~~ki~~~--------~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 166 EKAITYLKKAIYRFIKKK--QYVGIEEIWS--KLVHYNSDDFDFFLRIERKVLGH--------REFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHHHHHHHhhh--cchHHHHHHH--HHHhcCcccchHHHHHHHHHHhh--------hccchhHHHHHHHHHHH
Confidence 999999999988643210 0111111121 11222222333322222222221 11223344556667888
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 010063 384 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426 (519)
Q Consensus 384 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 426 (519)
...++|++++.+++.+++.. +....+...++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~--------~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHD--------NKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcC--------CcchhhHHHHHHHHH
Confidence 88999999999999988753 334456777777776
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=2e-09 Score=101.94 Aligned_cols=227 Identities=16% Similarity=0.105 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (519)
..-..++..+...|-..+|+..+++.- .+.....||...|+..+|..+..+-++ .
T Consensus 399 q~q~~laell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~le---------k 453 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELE---------K 453 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhc---------C
Confidence 346678899999999999998887642 344567888999999999888777654 2
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
+..+..|..+|.+.....-|++|.++.+.. .+.+...+|......++|.++...++.++++
T Consensus 454 ~~d~~lyc~LGDv~~d~s~yEkawElsn~~--------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~----- 514 (777)
T KOG1128|consen 454 DPDPRLYCLLGDVLHDPSLYEKAWELSNYI--------------SARAQRSLALLILSNKDFSEADKHLERSLEI----- 514 (777)
T ss_pred CCcchhHHHhhhhccChHHHHHHHHHhhhh--------------hHHHHHhhccccccchhHHHHHHHHHHHhhc-----
Confidence 333556666666655554444444444332 2235555666667789999999999999987
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
.+....+|+.+|.+..+.++++.|...|..++.. .|+...++++++..|...|+-.+|...+++|++
T Consensus 515 -----nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 515 -----NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred -----CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 3444667899999999999999999999998874 577789999999999999999999999999998
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010063 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (519)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 495 (519)
.- .....++.|...+....|.+++|++.+.+.+.+.+...++++
T Consensus 582 cn--------~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~v 625 (777)
T KOG1128|consen 582 CN--------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEV 625 (777)
T ss_pred cC--------CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchh
Confidence 32 233344566667778999999999999999998876554333
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.15 E-value=2.5e-08 Score=100.16 Aligned_cols=250 Identities=15% Similarity=0.063 Sum_probs=176.2
Q ss_pred CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (519)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (519)
+.-.|....++..|...+...+++++|+...+.+++. +|.....++.+|.++...+++.++... .++.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 4555777788999999999999999999999987764 455677888999999999998888776 555543
Q ss_pred HHhcC-----------CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 010063 276 ELNRG-----------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 344 (519)
Q Consensus 276 ~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 344 (519)
..... .+.+..-.++..+|.+|..+|+.++|...+++++++ +|..+.+++++|..|... +
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-h
Confidence 22110 012333468899999999999999999999999985 477888999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 010063 345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424 (519)
Q Consensus 345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 424 (519)
+++|+.++.+|+..+-.. .........|..+ +...-.+.+.=..+.++.+. .. ........+.-+=..
T Consensus 165 L~KA~~m~~KAV~~~i~~----kq~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~----~~--~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKK----KQYVGIEEIWSKL--VHYNSDDFDFFLRIERKVLG----HR--EFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHHHHHHHhh----hcchHHHHHHHHH--HhcCcccchHHHHHHHHHHh----hh--ccchhHHHHHHHHHH
Confidence 999999999999875432 1111111122111 11222222222222222221 11 122344566667788
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
|...++|++++..++.++++ .|....+...++.+|. +.|.. ...+++.+++.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s 284 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS 284 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence 99999999999999999984 3445567888999888 55554 67777777765
No 114
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.14 E-value=3.5e-07 Score=85.83 Aligned_cols=243 Identities=13% Similarity=0.045 Sum_probs=162.0
Q ss_pred cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (519)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (519)
.|+..+-+..|.++.....-. .........+..+|..|...|+.+.|...++++...- -+.-.+++.++...|..
T Consensus 360 e~~~~~~i~tyteAv~~vdP~-ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~----y~~v~dLa~vw~~waem 434 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPK-KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP----YKTVEDLAEVWCAWAEM 434 (835)
T ss_pred cCChHHHHHHHHHHHHccCcc-cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC----ccchHHHHHHHHHHHHH
Confidence 456666666666665543211 1112234568899999999999999999999998752 11224668889999999
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHH----hcCCCChhh------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 255 LGSIGRAKKAVEIYHRVITILEL----NRGTESADL------VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
-....+++.|..+.++|...-.. ..+...|.. ..++..++......|-++.....|++.+++.- .
T Consensus 435 Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-----a 509 (835)
T KOG2047|consen 435 ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-----A 509 (835)
T ss_pred HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----C
Confidence 99999999999999988754211 111122222 23455566666777888888888888887631 2
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (519)
.| ....|.|..+....-+++|.+.|++.+.+++ .|....+...|......-...-..+.|..+|++|++.+
T Consensus 510 TP---qii~NyAmfLEeh~yfeesFk~YErgI~LFk-----~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C- 580 (835)
T KOG2047|consen 510 TP---QIIINYAMFLEEHKYFEESFKAYERGISLFK-----WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC- 580 (835)
T ss_pred CH---HHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-----CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Confidence 23 3456778888888889999999999998853 34444444454444444344457899999999999854
Q ss_pred HhhCCCChhHH-HHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063 405 KYKGKEHPSFV-THLLNLAASYSRSKNFVEAERLLRICL 442 (519)
Q Consensus 405 ~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 442 (519)
.|..+ ..+...|.+-..-|--..|+..|++|-
T Consensus 581 ------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 581 ------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred ------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23333 334445556666677777777777653
No 115
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=9.5e-08 Score=83.09 Aligned_cols=289 Identities=18% Similarity=0.170 Sum_probs=185.6
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHH
Q 010063 127 SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL 206 (519)
Q Consensus 127 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (519)
.+....||..|+.+++-.+.. +..+...+-..+|.|++..|+|++|...|.-+..- ++.| +...
T Consensus 31 dfls~rDytGAislLefk~~~---------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-----~~~~--~el~ 94 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNL---------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-----DDAP--AELG 94 (557)
T ss_pred HHHhcccchhHHHHHHHhhcc---------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-----CCCC--cccc
Confidence 456788999999998877654 12333456678999999999999999999876552 1212 3347
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 010063 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286 (519)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 286 (519)
.+++.+++..|.|.+|.....++ ++.|...+.+..++. +.|+-++=...- ..+. +.
T Consensus 95 vnLAcc~FyLg~Y~eA~~~~~ka---------~k~pL~~RLlfhlah---klndEk~~~~fh-~~Lq-----------D~ 150 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEAKSIAEKA---------PKTPLCIRLLFHLAH---KLNDEKRILTFH-SSLQ-----------DT 150 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhC---------CCChHHHHHHHHHHH---HhCcHHHHHHHH-HHHh-----------hh
Confidence 78999999999999998877654 345666666666554 344443333222 2221 11
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010063 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366 (519)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 366 (519)
..-...|+.+.+..-.|.+|++.|.+.+. ++|........+|.+|.++.-++-+.+.+.--+.. .
T Consensus 151 ~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-------~ 215 (557)
T KOG3785|consen 151 LEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-------F 215 (557)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-------C
Confidence 23345677777778889999999999887 56777777788999999999999888777665554 2
Q ss_pred CCchHHHHHHHHHHHHHHH--cCChH----------------HHHHHHH----------HHHHHHHHhhCCCChhHHHHH
Q 010063 367 LDDSIMENMRIDLAELLHI--VGRGQ----------------EGRELLE----------ECLLITEKYKGKEHPSFVTHL 418 (519)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~--~g~~~----------------~A~~~~~----------~al~~~~~~~~~~~~~~~~~~ 418 (519)
|+.+... +..+-.+.+ .|+.. .+..+.+ -|+...... .....++.
T Consensus 216 pdStiA~---NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L----~~~IPEAR 288 (557)
T KOG3785|consen 216 PDSTIAK---NLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL----MKHIPEAR 288 (557)
T ss_pred CCcHHHH---HHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH----HhhChHhh
Confidence 3443321 223333322 22222 2222211 111111111 11234677
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063 419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (519)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (519)
.+|...|..+++..+|..+.+.. .|....-+..-|.+....|+--...++++-|.+.+.
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl-----------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDL-----------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred hhheeeecccccHHHHHHHHhhc-----------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 88999999999999998876531 244444456667788888887777777766655543
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.6e-07 Score=90.46 Aligned_cols=288 Identities=16% Similarity=0.134 Sum_probs=150.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh---cCCCCHH
Q 010063 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR---YGKTSIL 243 (519)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~ 243 (519)
.+-..|...|.+++|.++.+. .+...+...|++.+..+...++.+.|+++|+++-....+. +..+.+.
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~---------~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAET---------KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhh---------ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 344556677777777665543 2334455568999999999999999999999863221111 0111110
Q ss_pred ---------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc-----CC--------CChhhHHHHHHHHHHHHhCC
Q 010063 244 ---------LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR-----GT--------ESADLVLPLFSLGSLFIKEG 301 (519)
Q Consensus 244 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~--------~~~~~~~~~~~la~~~~~~g 301 (519)
-...+...|..+...|+.+.|+.+|..|-+.+.... |. +......+.+.||+.|...|
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH
Confidence 123455678888889999999999988765542211 00 00111223445555555566
Q ss_pred CHHHHHHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 010063 302 KAVDAESVFSRILKIYTKV--YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379 (519)
Q Consensus 302 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l 379 (519)
++.+|+.+|.+|......+ ..+++ .-.-+.+++.. ....+.-.|..||++.=-.+ ..-
T Consensus 982 ~v~~Av~FfTrAqafsnAIRlcKEnd--~~d~L~nlal~-s~~~d~v~aArYyEe~g~~~-----------------~~A 1041 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQAFSNAIRLCKEND--MKDRLANLALM-SGGSDLVSAARYYEELGGYA-----------------HKA 1041 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHhh-cCchhHHHHHHHHHHcchhh-----------------hHH
Confidence 6666655555443321100 00000 00111111111 01112222333333211000 111
Q ss_pred HHHHHHcCChHHHHHHHH-----HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH------HHHHHHHHh
Q 010063 380 AELLHIVGRGQEGRELLE-----ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR------ICLDIMTKT 448 (519)
Q Consensus 380 a~~~~~~g~~~~A~~~~~-----~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~ 448 (519)
..+|.+.|.+.+|+++.= .++++..+-+.+. ..+..+..-+..+....+|++|..++- .|+.+....
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~--sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG--SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNR 1119 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC--CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 234555566666555432 2333333322221 123455666788888889999887654 444443221
Q ss_pred -----------cCC------CCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 449 -----------VGP------DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 449 -----------~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
..+ +.......+..+|.++.++|.|..|-+-|.+|=+
T Consensus 1120 nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1120 NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 111 1123355678899999999999999999987743
No 117
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.2e-07 Score=76.59 Aligned_cols=226 Identities=15% Similarity=0.101 Sum_probs=168.5
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063 239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (519)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (519)
++....+..|..-+.+|....+|++|...+.++.+..+... ...+.+..+-..+.+..++..+.++..+++++..++.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444556666778888999999999999999998877643 3445677888889999999999999999999999998
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (519)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (519)
+. ..|+.+..-...+--....-++++|+.+|++++.+.+.. .........+...++++.+..++++|-..+.+
T Consensus 103 E~---GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~----dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 103 EC---GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED----DRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred Hh---CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 87 456655444555555667889999999999999998762 33344455667889999999999999988888
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHH
Q 010063 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 478 (519)
Q Consensus 399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 478 (519)
-..+..+.. ..+.....+.....+|.-..+|..|..+++...++ .+-..++...++.+|-..| ..|+.++..+
T Consensus 176 e~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 176 EGVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred hhhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 776665553 23334445555566777778999999999886653 2333456666777776654 5688887766
Q ss_pred HH
Q 010063 479 LV 480 (519)
Q Consensus 479 ~~ 480 (519)
.+
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 54
No 118
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.13 E-value=4.1e-08 Score=83.55 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
...++..|...+..|+|.+|+..|++.+.. .+.++....+...+|.++...|++++|+..+++.+... +
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y----P 73 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY----P 73 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----C
Confidence 455899999999999999999999999887 56688888999999999999999999999999988776 6
Q ss_pred CchHHHHHHHHHHHHHHccc-----------cHHHHHHHHHHHHHHHHHhcCCCCH--------------HHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLE-----------NYEKSMLVYQRVINVLESRYGKTSI--------------LLVTSLLGMA 252 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~la 252 (519)
.++....+++.+|.++.... ...+|+..++..+.... +++ .++.--..+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP-----~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP-----NSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T-----TSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc-----CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888999998876543 34477777777776542 222 2233345679
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHH
Q 010063 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307 (519)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 307 (519)
..|...|.+..|+..++.+++.+ ++.+....++..++..|..+|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999999998874 345666788999999999999988554
No 119
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=7.2e-08 Score=81.84 Aligned_cols=229 Identities=17% Similarity=0.133 Sum_probs=165.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (519)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (519)
..+.+..+|..|++++..-.+. .|.....+..+|.||+...+|..|...|++.-... |.....
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er----------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-------P~~~qY 80 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELER----------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-------PELEQY 80 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------hHHHHH
Confidence 3456777889999888766555 66677788999999999999999999999876554 777766
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (519)
...-+..+++.+.+..|+........ +......++..-+.+.+..+++..+....++. ....
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----------p~en 142 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----------PSEN 142 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc----------cCCC
Confidence 66778888899999999887654422 22333445555677777888888777666543 1234
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc--
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN-- 363 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-- 363 (519)
.+....+.|.+.++.|++++|++-|+.+++. +.-.|. .-++++.++++.|+++.|+++..+.++.--+..
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpl---lAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPL---LAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhh-----cCCCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 5778889999999999999999999999885 222333 346789999999999999999988876543320
Q ss_pred ------cCCCCc-----------hHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063 364 ------YMSLDD-----------SIMENMRIDLAELLHIVGRGQEGRELLE 397 (519)
Q Consensus 364 ------~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (519)
..++|. ..+..+++..+.++.+.|+++.|.+.+.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 001111 1223444556778888899888877654
No 120
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.11 E-value=5.5e-09 Score=86.39 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
...+..++.+|.++...|++++|+..+++++.+. ++++....++.++|.++...|++++|+..+++++.+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~----- 101 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER----- 101 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 4456678999999999999999999999999873 234455678999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063 280 GTESADLVLPLFSLGSLFI-------KEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (519)
.|.....+.++|.++. ..|++++|...+.+++..+++..+.+++...
T Consensus 102 ---~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 102 ---NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred ---CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 2333445555555555 9999999999999999998888776664443
No 121
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.10 E-value=1.7e-07 Score=81.72 Aligned_cols=186 Identities=17% Similarity=0.147 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (519)
...+..+...+..|++++|+..|++.+.. .+..+....+...+|.+|+..+++++|+..+++.++.. ++
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-------yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----P~ 101 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNR-------YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----PT 101 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----cC
Confidence 33778899999999999999999999887 55677777888999999999999999999999998875 77
Q ss_pred chHHHHHHHHHHHHHHccc---------------c---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC
Q 010063 199 EPLLDAILLHMGSMYSTLE---------------N---YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR 260 (519)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 260 (519)
+|....+++.+|.++...+ + ..+|+..+++.++.+ |+++..
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya---------------- 160 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYT---------------- 160 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhH----------------
Confidence 7888888999998764443 1 234555555555442 222221
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 010063 261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC 340 (519)
Q Consensus 261 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 340 (519)
.+|...+..+... .+.--..+|..|.+.|.|..|+.-++.+++.+ ++.+....++..++..|.
T Consensus 161 -~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~ 223 (243)
T PRK10866 161 -TDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYR 223 (243)
T ss_pred -HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH
Confidence 2222222222111 12333467888888999999999888888764 345667788888999999
Q ss_pred HCCCHHHHHHHHH
Q 010063 341 ANGNAEEAVELYK 353 (519)
Q Consensus 341 ~~g~~~~A~~~~~ 353 (519)
..|..++|.....
T Consensus 224 ~lg~~~~a~~~~~ 236 (243)
T PRK10866 224 QLQLNAQADKVAK 236 (243)
T ss_pred HcCChHHHHHHHH
Confidence 9999988877654
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=6.8e-09 Score=98.49 Aligned_cols=218 Identities=15% Similarity=0.156 Sum_probs=163.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (519)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
.+..+...|-...|+..+++ ...+.....||...|+..+|..+..+-++ . +..+
T Consensus 404 laell~slGitksAl~I~Er------------------lemw~~vi~CY~~lg~~~kaeei~~q~le-k-------~~d~ 457 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFER------------------LEMWDPVILCYLLLGQHGKAEEINRQELE-K-------DPDP 457 (777)
T ss_pred HHHHHHHcchHHHHHHHHHh------------------HHHHHHHHHHHHHhcccchHHHHHHHHhc-C-------CCcc
Confidence 34445556666666655554 33556667788888888888877766544 1 2222
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (519)
..|..+|.+.... .+|+++.++.+. ..+.+...+|......++|.++.++++..+++ .
T Consensus 458 ~lyc~LGDv~~d~-------s~yEkawElsn~-------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------n 515 (777)
T KOG1128|consen 458 RLYCLLGDVLHDP-------SLYEKAWELSNY-------ISARAQRSLALLILSNKDFSEADKHLERSLEI--------N 515 (777)
T ss_pred hhHHHhhhhccCh-------HHHHHHHHHhhh-------hhHHHHHhhccccccchhHHHHHHHHHHHhhc--------C
Confidence 3355566655544 455555554322 12445666777777899999999999999997 6
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
|....+|+.+|.+....++++.|...|..++.. .|+...+|+|++..|...|+-.+|...+.++++-.
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn---- 583 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN---- 583 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC----
Confidence 777899999999999999999999999999884 68888999999999999999999999999999863
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010063 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (519)
.++ ..++.|.-.+....|.+++|++.+.+.+.+.+...
T Consensus 584 ---~~~---w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 584 ---YQH---WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred ---CCC---CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 223 33456777788899999999999999988776543
No 123
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=6.7e-08 Score=82.25 Aligned_cols=170 Identities=18% Similarity=0.204 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (519)
....++..|..+...|++.+|+..|++.+..+ +.++....+...+|.++...|++++|+..+++.++..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y------ 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY------ 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------
Confidence 35678889999999999999999999998864 4567788899999999999999999999999999874
Q ss_pred CCCchHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHHhhCCCChh--------------HHHHHHH
Q 010063 366 SLDDSIMENMRIDLAELLHIVG-----------RGQEGRELLEECLLITEKYKGKEHPS--------------FVTHLLN 420 (519)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~--------------~~~~~~~ 420 (519)
|.++....+++.+|.++..+. ...+|+..|+..+..+. +++. .+.--..
T Consensus 73 -P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP-----~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 73 -PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP-----NSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T-----TSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc-----CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667778888888876543 23467777777666542 2222 1223345
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477 (519)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 477 (519)
+|..|.+.|.+..|+..++.+++.+ |+.+....++..++..|..+|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 6899999999999999999999854 666777888999999999999988554
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.07 E-value=2.1e-08 Score=83.97 Aligned_cols=165 Identities=21% Similarity=0.166 Sum_probs=131.1
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
.|....+ .+++..+...|+-+.+..+..++.. .++........+|......|++.+|+..++++...
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAI--------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhc--------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence 4444555 8888999999999999888887654 34444445556899999999999999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (519)
.|++ +..++.+|.+|.+.|++++|...|.+++++. +....+..|+|..|.-.|+++.|..++..+.
T Consensus 130 ---~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 130 ---APTD---WEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred ---CCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333 4567889999999999999999999999875 2334578899999999999999999999887
Q ss_pred HHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 010063 443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482 (519)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (519)
. ..+....+..+++.+...+|++++|.+.-.+
T Consensus 196 l--------~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 196 L--------SPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred h--------CCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6 2233445678999999999999999876544
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.1e-06 Score=84.77 Aligned_cols=265 Identities=14% Similarity=0.087 Sum_probs=157.4
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHH----hhhhhcCCCchHH---------HHHHHHHHHHHHccccHHHHHH
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMS----GIVDSLKDDEPLL---------DAILLHMGSMYSTLENYEKSML 224 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~ 224 (519)
......++++.+.-+...+|.+.|+++|+++- ++.+-+.++.+.+ ...|...|......|+.+.|+.
T Consensus 854 RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 854 RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHH
Confidence 44455678899999999999999999998743 2222222332221 1346678888999999999999
Q ss_pred HHHHHHHHHHHh-----cCCCC--------HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 010063 225 VYQRVINVLESR-----YGKTS--------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF 291 (519)
Q Consensus 225 ~~~~al~~~~~~-----~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 291 (519)
+|..|-+.+... .|..+ .....+.+.+|..|...|++.+|+..|.+|......+.--...+.-.-+.
T Consensus 934 ~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 934 FYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred HHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999887654221 11110 11234567899999999999999999988765432221101111122223
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH-----HHHHHHHhhccCC
Q 010063 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK-----KALRVIKDSNYMS 366 (519)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-----~al~~~~~~~~~~ 366 (519)
+++.. ....+.-.|..||++.--. ...-..+|.+.|.+.+|+++.- .++++..+....+
T Consensus 1014 nlal~-s~~~d~v~aArYyEe~g~~---------------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1014 NLALM-SGGSDLVSAARYYEELGGY---------------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred HHHhh-cCchhHHHHHHHHHHcchh---------------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 33321 1222344455555543110 0111245666677777766543 2445544432223
Q ss_pred CCchHHHHHHHHHHHHHHHcCChHHHHHHHH------HHHHHHHHh-----------hCC------CChhHHHHHHHHHH
Q 010063 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLE------ECLLITEKY-----------KGK------EHPSFVTHLLNLAA 423 (519)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~-----------~~~------~~~~~~~~~~~la~ 423 (519)
.|+. .+..-+..+....+|++|..++- .|+.++... ..+ +.......+..+|.
T Consensus 1078 sDp~----ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1078 SDPK----LLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred CCHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 3332 33566888888889999887754 444443221 011 11233467888999
Q ss_pred HHHhccCHHHHHHHHHHHH
Q 010063 424 SYSRSKNFVEAERLLRICL 442 (519)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al 442 (519)
++.++|.|..|-+-|.+|=
T Consensus 1154 ~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHhccchHHHHHHHhhhh
Confidence 9999999999988887763
No 126
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.06 E-value=1.2e-08 Score=84.45 Aligned_cols=124 Identities=10% Similarity=0.034 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010063 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 405 (519)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 405 (519)
...+..+..+|.++...|++++|+..+++++.+. +++.....++.++|.++...|++++|+..+++++.+...
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-------~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-------IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3456788999999999999999999999999872 334444568899999999999999999999999986321
Q ss_pred hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchh
Q 010063 406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS 457 (519)
Q Consensus 406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 457 (519)
.. ........++..+|..+...|++++|...+.+++..+++..+.+++...
T Consensus 105 ~~-~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 105 LP-QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred cH-HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 10 1112223334444444449999999999999999999988777764443
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.06 E-value=2.6e-07 Score=80.59 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
....+..|..+...|++++|+..|++++... +..+....+...+|.++...+++++|+..+++.++.. |+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cC
Confidence 4456678899999999999999999998863 3456666778999999999999999999999999874 57
Q ss_pred ChhHHHHHHHHHHHHHHCC---------------C---HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHc
Q 010063 325 DGRVGMAMCSLAHAKCANG---------------N---AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV 386 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 386 (519)
+|....++..+|.++...+ + ..+|+..+++.++.+ |+.....
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-------P~S~ya~------------- 161 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-------PNSQYTT------------- 161 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-------cCChhHH-------------
Confidence 7888889999998764443 2 234556666665553 3333322
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 010063 387 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT 466 (519)
Q Consensus 387 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 466 (519)
+|...+...... .+.--..+|..|.+.|.|..|+.-++.+++-+ |+.+...+++..+...
T Consensus 162 ----~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~a 221 (243)
T PRK10866 162 ----DATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENA 221 (243)
T ss_pred ----HHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHH
Confidence 222222222111 12233467888999999999999999988854 5667788889999999
Q ss_pred HHhcCChHHHHHHHHH
Q 010063 467 LYHLNRDKEAEKLVLE 482 (519)
Q Consensus 467 ~~~~g~~~~A~~~~~~ 482 (519)
|...|..++|......
T Consensus 222 y~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 222 YRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHcCChHHHHHHHHH
Confidence 9999999998876643
No 128
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.04 E-value=3.6e-05 Score=77.54 Aligned_cols=351 Identities=11% Similarity=0.033 Sum_probs=226.9
Q ss_pred CCCChHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063 155 GNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (519)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (519)
...+...+.+...+|.++. ...+++.|+.+++++..+.++ ..-......+...++.++.+.+... |....++.++..
T Consensus 52 ~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 52 KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 3445566788899999987 689999999999999888865 3323334455667788998888777 999999999987
Q ss_pred HHhcCCCCHHHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010063 234 ESRYGKTSILLVTSLLGM-AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312 (519)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 312 (519)
+.. .+.........+ ...+...+++..|.+.++.......... +......+....+.+....+..+++++..++
T Consensus 130 ~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~ 204 (608)
T PF10345_consen 130 ETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQR 204 (608)
T ss_pred hcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 652 222222333333 3333334899999999999998876432 2233344445556777788889999999999
Q ss_pred HHHHHHHh--cCCCChhHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHhhccCC------CC--------------
Q 010063 313 ILKIYTKV--YGENDGRVGMAMCSLAH--AKCANGNAEEAVELYKKALRVIKDSNYMS------LD-------------- 368 (519)
Q Consensus 313 al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~-------------- 368 (519)
+....... .+..++....++..+-. ++...|+++.+...+++.-....+..... ++
T Consensus 205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~ 284 (608)
T PF10345_consen 205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNS 284 (608)
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccC
Confidence 98776654 11123334445554444 44567888888877776655554431111 00
Q ss_pred ------------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCCh---------------hHHHHH
Q 010063 369 ------------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHP---------------SFVTHL 418 (519)
Q Consensus 369 ------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~---------------~~~~~~ 418 (519)
.....-++.--|......|..++|.+++++++...++... ...+ -...+.
T Consensus 285 ~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~ 364 (608)
T PF10345_consen 285 GGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLL 364 (608)
T ss_pred CCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHH
Confidence 0111222333355566677778999999999999887751 1100 012234
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCC-CCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCc
Q 010063 419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGP-DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497 (519)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 497 (519)
..++.+..-.|++.+|....+.+.....+...+ ........++..|..+...|+.+.|..+|.+..-......++..+.
T Consensus 365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~ 444 (608)
T PF10345_consen 365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF 444 (608)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc
Confidence 456777788999999999999888866543221 1123355667788888999999999999997765554455555554
Q ss_pred chhh-HHHHHHHHHHH
Q 010063 498 VGKL-FCFVLFGLVWF 512 (519)
Q Consensus 498 ~~~~-~~~~~l~~~~~ 512 (519)
.+.. -+..|+..++.
T Consensus 445 ~El~ila~LNl~~I~~ 460 (608)
T PF10345_consen 445 RELYILAALNLAIILQ 460 (608)
T ss_pred hHHHHHHHHHHHHHhH
Confidence 4332 33335555544
No 129
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.5e-05 Score=72.71 Aligned_cols=341 Identities=16% Similarity=0.094 Sum_probs=219.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHH----HHHHHHHH-HHhcCChHHHHHHHHHHHhhhhhc-----
Q 010063 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVA----ILDIIALG-YVYIGDLKFVQSLLDMMSGIVDSL----- 195 (519)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~----- 195 (519)
..+....+..+.....+.+-+++.. ...++..-+ .+..+-.+ |...|+...+...+++........
T Consensus 175 ~ll~me~d~~dV~~ll~~~~qi~~n----~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~ 250 (629)
T KOG2300|consen 175 MLLIMERDDYDVEKLLQRCGQIWQN----ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSR 250 (629)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHhc----cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCC
Confidence 3334444555555555555544433 222332222 23334444 456788888777777655433322
Q ss_pred -------CCCchHHHH--------HHHHH--HHHHHccccHHHHHHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHH
Q 010063 196 -------KDDEPLLDA--------ILLHM--GSMYSTLENYEKSMLVYQRVINVLESRYGKT--SI----LLVTSLLGMA 252 (519)
Q Consensus 196 -------~~~~~~~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~la 252 (519)
+.+.+.... ++..+ -.--...|-+++|.++-++++...++....+ .+ .....+..+.
T Consensus 251 ~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv 330 (629)
T KOG2300|consen 251 GHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIV 330 (629)
T ss_pred CccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 222222211 11111 1112346888999999999988876654333 11 2234566777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063 253 KVLGSIGRAKKAVEIYHRVITILELNRGT--ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (519)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (519)
.+-.-.|++.+|++-...+.+...+..++ -....+.....+|......|.++.|+..|..+.+...+. .-.+.
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~ 405 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAF 405 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHH
Confidence 88888999999999999999888775432 122345566778888888999999999999999875432 23556
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSN-YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (519)
+..++|.+|...|+-+.--+ +++...... .........+.+++..|-....++++.||...+.+.+++.... +
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~----~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d 479 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYK----ALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--D 479 (629)
T ss_pred HHHhHHHHHHHhccHHHHHH----HHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--h
Confidence 77889999999887654333 333321100 0000112334556667778889999999999999999987322 1
Q ss_pred CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCC--hHHHHHHHHHH
Q 010063 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR--DKEAEKLVLEA 483 (519)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a 483 (519)
...-.+-.+..|+.+....|+..++.+..+-++.+.+++ ++++.......-+-.+|...|+ .+...+.+..-
T Consensus 480 ~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~~ 553 (629)
T KOG2300|consen 480 LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRKH 553 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 233445567788999999999999999999999999887 6777777777777888888888 66666666553
No 130
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=5.1e-06 Score=75.49 Aligned_cols=269 Identities=13% Similarity=0.126 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH--------
Q 010063 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL-------- 233 (519)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------- 233 (519)
...+...+..-...|+..-|...|+.+.+.. ++ +......+...+..-..+..++.|.-.|.-|++..
T Consensus 207 v~~wikyarFE~k~g~~~~aR~VyerAie~~---~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL 282 (677)
T KOG1915|consen 207 VSNWIKYARFEEKHGNVALARSVYERAIEFL---GD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEEL 282 (677)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 4556667777788899999999999988776 22 33334445556666666777777777777666542
Q ss_pred -------HHhcCC---------------------CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC-Ch
Q 010063 234 -------ESRYGK---------------------TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE-SA 284 (519)
Q Consensus 234 -------~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~ 284 (519)
++.+|. ++|...+++...-.+-...|+.+.-.+.|++|+.-..-..... ..
T Consensus 283 ~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 283 YKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred HHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 111111 2233345666666677777999999999999986421100000 00
Q ss_pred hhHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 285 DLVLPLFSLG-SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 285 ~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
.....+.+.+ ..-....+.+.+.+.|+.++++.. ..+-..+..+...|....++.+...|...+-.|+..+.+.+
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP----HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K 438 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDLIP----HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK 438 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC----cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh
Confidence 1111222222 112356889999999999998642 12233455555555555555555555555444443221100
Q ss_pred c-----------------------CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Q 010063 364 Y-----------------------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420 (519)
Q Consensus 364 ~-----------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 420 (519)
. .-.-.|....++...|.+-..+|+.+.|...|+-|+.-- . -+.|.. .+..
T Consensus 439 lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp--~--ldmpel--lwka 512 (677)
T KOG1915|consen 439 LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP--A--LDMPEL--LWKA 512 (677)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc--c--cccHHH--HHHH
Confidence 0 001123335567788888888999999999888776521 0 122332 2334
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHH
Q 010063 421 LAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
....-...|.+++|..+|++.++.
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHHh
Confidence 455567889999999999999883
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.03 E-value=6.3e-08 Score=77.68 Aligned_cols=123 Identities=22% Similarity=0.215 Sum_probs=99.7
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 010063 299 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378 (519)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 378 (519)
..++...+...+++.+.- .++.+....+...+|.++...|++++|...|++++.. .+++.....+...
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-------~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-------APDPELKPLARLR 90 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCHHHHHHHHHH
Confidence 578888887777777663 2344455678888999999999999999999999885 3556666677889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (519)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (519)
+|.++...|++++|+..++.. ...+........+|.+|...|++++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999998652 2344455677889999999999999999999874
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.03 E-value=8.2e-09 Score=80.47 Aligned_cols=102 Identities=9% Similarity=0.092 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
++.....+.+|..+...|++++|...|+-...+ +|.....+++||.++..+|++.+|+..|.+++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 555666899999999999999999999987765 4666889999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
.|+.+..+.++|.++...|+.+.|.+.|+.++..+
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 46678899999999999999999999999999987
No 133
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.02 E-value=6.6e-07 Score=84.07 Aligned_cols=243 Identities=14% Similarity=0.143 Sum_probs=167.9
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (519)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (519)
+..|+..+-+..|.+|+..+... .........+..+|..|...|+.+.|..+|+++...- -..-.+++.+|..
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~----ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~---y~~v~dLa~vw~~ 430 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPK----KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP---YKTVEDLAEVWCA 430 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcc----cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC---ccchHHHHHHHHH
Confidence 34577888888888887764221 1122335578899999999999999999999988764 2233567888999
Q ss_pred HHHHHHccccHHHHHHHHHHHHHHHHH----hcCCCCHH------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063 209 MGSMYSTLENYEKSMLVYQRVINVLES----RYGKTSIL------LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (519)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (519)
.|..-....+++.|+.+.++|...-.. .+....|. ....+...+......|-++.....|++.+++.
T Consensus 431 waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr--- 507 (835)
T KOG2047|consen 431 WAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR--- 507 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh---
Confidence 999999999999999999998754221 12222332 23445556677777788888888888888773
Q ss_pred cCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH---HHHHHHHHCCCHHHHHHHHHHH
Q 010063 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC---SLAHAKCANGNAEEAVELYKKA 355 (519)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~~a 355 (519)
..+.....|.|..+....-+++|.+.|++.+.++ ..|.....|+ .....-+...+.+.|..+|++|
T Consensus 508 -----iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF------k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 508 -----IATPQIIINYAMFLEEHKYFEESFKAYERGISLF------KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred -----cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC------CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2234566778888888888999999999988876 2344433333 3333333445789999999999
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010063 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (519)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (519)
++.+ + +...-.++...|..-..-|-...|+..|++|-
T Consensus 577 L~~C------p--p~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 577 LDGC------P--PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HhcC------C--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9853 1 22223344555666666677777777777653
No 134
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.3e-07 Score=80.37 Aligned_cols=224 Identities=17% Similarity=0.097 Sum_probs=161.5
Q ss_pred HhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010063 173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252 (519)
Q Consensus 173 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 252 (519)
....+|.+|++++..-.+ ..|.....+..+|.||+...+|..|-.+|++.-.. .|.........+
T Consensus 21 I~d~ry~DaI~~l~s~~E-------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~A 85 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELE-------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQA 85 (459)
T ss_pred HHHhhHHHHHHHHHHHHh-------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHH
Confidence 456677788777765433 33544556889999999999999999999987554 466666667778
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 010063 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332 (519)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 332 (519)
..++..+.+..|+.......+ +......++..-+.+.+..+++..+..+.++.- ....+...
T Consensus 86 QSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp----------~en~Ad~~ 147 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP----------SENEADGQ 147 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhcc----------CCCccchh
Confidence 999999999999887765532 122233444555666777788887777665431 12456678
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC---
Q 010063 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK--- 409 (519)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--- 409 (519)
++.|.+.++.|++++|.+-|+.+++. +.-.+.++ ++++.++.+.|+++.|+++..+.++...+..++
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqv-------sGyqpllA---YniALaHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQV-------SGYQPLLA---YNLALAHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhh-------cCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 89999999999999999999999987 34444443 789999999999999999998887764332110
Q ss_pred -------C-----C------hhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010063 410 -------E-----H------PSFVTHLLNLAASYSRSKNFVEAERLLR 439 (519)
Q Consensus 410 -------~-----~------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (519)
+ + .....+++..+.++.+.|+++.|.+.+.
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 0 0 1223455666778899999998877654
No 135
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=5.9e-09 Score=88.88 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhh
Q 010063 115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (519)
Q Consensus 115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (519)
....+.+-..+..+.+.++|.+|+..|.+||++ .|..+..|.+.+.+|.++|.++.|++-.+.++.+.
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l----------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-- 145 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL----------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-- 145 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--
Confidence 345566888999999999999999999999999 88999999999999999999999999999999876
Q ss_pred cCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
|....+|..||.+|..+|++.+|++.|++++++
T Consensus 146 -----p~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 146 -----PHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred -----hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 888899999999999999999999999999987
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.02 E-value=1.6e-08 Score=78.88 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
+......+.+|..+...|++++|...|+-...+ +|.....+++||.++..+|++++|+..|.+++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 566778889999999999999999999998877 6778899999999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
+|+.+..+.++|.++...|+.+.|.+.|+.++....
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 456667889999999999999999999999999863
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.01 E-value=6.6e-08 Score=77.57 Aligned_cols=135 Identities=11% Similarity=0.092 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
....+..+......++...+...++..+.. .++.+....+...+|.+++..|++++|...|+.++... +
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----~ 79 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKD-------YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----P 79 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----C
Confidence 344666666667899999988877777665 55566677888999999999999999999999988743 3
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (519)
+......+...++.++...|++++|+..++.. ++.+........+|.++...|++++|+..|++++
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 44445566889999999999999999998652 1234456677889999999999999999999874
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=7.4e-07 Score=74.16 Aligned_cols=193 Identities=19% Similarity=0.099 Sum_probs=144.7
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 010063 217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL 296 (519)
Q Consensus 217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 296 (519)
.+.++-+++....+...... .-.++....+-.+..+....|+.+-|..++++....+ |....+...-|..
T Consensus 26 rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHH
Confidence 45556666666655544432 1223445667777888888999999999988876542 3344556667888
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHH
Q 010063 297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376 (519)
Q Consensus 297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 376 (519)
+...|++++|+++|+..++ ++|....++-..--+...+|+.-+|++.+.+-++.+.. | ..+|
T Consensus 96 lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D----~EAW 157 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------D----QEAW 157 (289)
T ss_pred HHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------c----HHHH
Confidence 9999999999999999887 55665556666666777889999999999998888532 2 3567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHH
Q 010063 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDIM 445 (519)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 445 (519)
..++.+|...|+|++|.-++++.+-+ .|........+|.++.-+| +..-|.++|.+++++.
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 88999999999999999999998763 4555566677788777665 5678999999999963
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.01 E-value=2.3e-08 Score=79.52 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
+|........+|..+...|++++|...+++++.. .|.....+..+|.++...|++++|..++++++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3445677889999999999999999999999876 4556788999999999999999999999999884
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
+|.....+..+|.++...|++++|+..++++++.
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566678899999999999999999999999987
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.00 E-value=1.6e-08 Score=80.39 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=88.9
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
+|........+|..+...|++++|...++++.... |....++..+|.++...|++++|..++++++...
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 81 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD---- 81 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 77778889999999999999999999999987754 3345568899999999999999999999988752
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (519)
|.....+..+|.++...|++++|+..++++++.
T Consensus 82 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 ----PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334677889999999999999999999999987
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=1.5e-08 Score=90.54 Aligned_cols=263 Identities=18% Similarity=0.156 Sum_probs=162.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (519)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
.++..+-.|+|..++.-++ +. .............+.++++.+|+++..+.-... ..+|...
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~--~~--------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---------~~~~~l~ 67 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS--LK--------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---------SSSPELQ 67 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH--CH--------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---------TSSCCCH
T ss_pred HHHHHHHhhhHHHHHHHhh--cc--------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---------CCChhHH
Confidence 3456677899999997665 11 233556677778889999999998766533321 1223322
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
+...++..+...++-+.++.-+++. ...... .........|.++...|++++|++.+.+.
T Consensus 68 -av~~la~y~~~~~~~e~~l~~l~~~-------~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----------- 128 (290)
T PF04733_consen 68 -AVRLLAEYLSSPSDKESALEELKEL-------LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----------- 128 (290)
T ss_dssp -HHHHHHHHHCTSTTHHCHHHHHHHC-------CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----------
T ss_pred -HHHHHHHHHhCccchHHHHHHHHHH-------HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----------
Confidence 2455566555444444444333222 111111 12234556688899999999998887653
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG--NAEEAVELYKKALRVIK 360 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~ 360 (519)
....+......++..+++++.|.+.++.+.++ +.+...+....+++....| ++.+|...|++..+.+
T Consensus 129 --~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~- 197 (290)
T PF04733_consen 129 --GSLELLALAVQILLKMNRPDLAEKELKNMQQI--------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF- 197 (290)
T ss_dssp --TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-
T ss_pred --CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc-
Confidence 12345556778899999999999988776542 2222223333344444444 6899999999854321
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCH-HHHHHHHH
Q 010063 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF-VEAERLLR 439 (519)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~ 439 (519)
++ ...+++.++.++..+|++++|.+.+++++. ..|....++.+++.+....|+. +.+.+++.
T Consensus 198 -----~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 198 -----GS----TPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp -----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred -----CC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 11 234568899999999999999999999865 3455667889999999999998 55666666
Q ss_pred HHHHHHHHhcCCCCcchh
Q 010063 440 ICLDIMTKTVGPDDQSIS 457 (519)
Q Consensus 440 ~al~~~~~~~~~~~~~~~ 457 (519)
+.... .|+||...
T Consensus 261 qL~~~-----~p~h~~~~ 273 (290)
T PF04733_consen 261 QLKQS-----NPNHPLVK 273 (290)
T ss_dssp HCHHH-----TTTSHHHH
T ss_pred HHHHh-----CCCChHHH
Confidence 65442 35665443
No 142
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=4.3e-08 Score=87.58 Aligned_cols=260 Identities=16% Similarity=0.120 Sum_probs=159.0
Q ss_pred HHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010063 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (519)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (519)
-++..|+|..++.-.+ .. ..+.+........+.+++..+|+++..+.-... ..+|. ..+...
T Consensus 10 n~fy~G~Y~~~i~e~~-~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~ 71 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRL 71 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHH
T ss_pred HHHHhhhHHHHHHHhh-cc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHH
Confidence 3567899999886555 11 122234445567788899999988765543321 12222 334455
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (519)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (519)
++..+...++-+.++.-++..+. +.............|.++...|++++|++.+.+. ....
T Consensus 72 la~y~~~~~~~e~~l~~l~~~~~------~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE 132 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKELLA------DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------------GSLE 132 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHCCC------TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHH
T ss_pred HHHHHhCccchHHHHHHHHHHHH------hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------------Cccc
Confidence 66666554554444443332211 1112122345556678888899999999887653 1123
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhhC
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKG 408 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~ 408 (519)
.......++...++++.|.+.++.+.+. .. +..+.. ...+.+....| ++.+|...|++..+
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~-------~e-D~~l~q--La~awv~l~~g~e~~~~A~y~f~El~~------- 195 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI-------DE-DSILTQ--LAEAWVNLATGGEKYQDAFYIFEELSD------- 195 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC-------SC-CHHHHH--HHHHHHHHHHTTTCCCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CC-cHHHHH--HHHHHHHHHhCchhHHHHHHHHHHHHh-------
Confidence 4455678899999999999888775443 22 322211 22333444444 68999999998533
Q ss_pred CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHH
Q 010063 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALYIR 487 (519)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~ 487 (519)
..+.....++.+|.++..+|++++|.+.+++++. .+|....++.+++.+....|+. +.+.+++.+....
T Consensus 196 -~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~- 265 (290)
T PF04733_consen 196 -KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS- 265 (290)
T ss_dssp -CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-
T ss_pred -ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-
Confidence 2234456788999999999999999999999875 3456667889999999999998 5566666665443
Q ss_pred HHhcCCCCCcc
Q 010063 488 EIAFGKDSLPV 498 (519)
Q Consensus 488 ~~~~~~~~~~~ 498 (519)
.|+||.+
T Consensus 266 ----~p~h~~~ 272 (290)
T PF04733_consen 266 ----NPNHPLV 272 (290)
T ss_dssp ----TTTSHHH
T ss_pred ----CCCChHH
Confidence 3667655
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.4e-06 Score=71.20 Aligned_cols=197 Identities=15% Similarity=0.174 Sum_probs=149.7
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (519)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (519)
....+.++.+++..+.+.-.... ...++.-.++-.+..+....|+.+-|..++++....+ |...++...
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~----~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-------p~S~RV~~l 91 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSG----ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-------PGSKRVGKL 91 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhc----ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-------CCChhHHHH
Confidence 34456778888888777665442 2366667777788888889999999999998876655 222233455
Q ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 010063 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (519)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (519)
-|..+...|++++|+++|+..++ ++|....++..--.+...+|+.-+|++.+..-++.+ +....
T Consensus 92 kam~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~E 155 (289)
T KOG3060|consen 92 KAMLLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQE 155 (289)
T ss_pred HHHHHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHH
Confidence 67788889999999999998765 335444455555666778899999999998888874 44578
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHH
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVIK 360 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 360 (519)
+|..++.+|...|+|++|.-++++.+-+ .|.....+..+|.+++-+| ++.-|.++|.+++++..
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999999874 4555566777888777765 56779999999999843
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.94 E-value=6.3e-08 Score=80.32 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=88.3
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (519)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (519)
..+..+..+.++|..+...|++++|+.++++++.... +++.....+.++|.++...|++++|+..+++++.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-------DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 3456777899999999999999999999999998732 23333567899999999999999999999999985
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhcc-------CHHHHHHHHHHHHHHHHHhcCCC
Q 010063 404 EKYKGKEHPSFVTHLLNLAASYSRSK-------NFVEAERLLRICLDIMTKTVGPD 452 (519)
Q Consensus 404 ~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~ 452 (519)
.|.....+..+|.++...| ++++|...++++++..++....+
T Consensus 102 -------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 102 -------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred -------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444566677787777655 46777777777777766655444
No 145
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=3.9e-06 Score=69.48 Aligned_cols=225 Identities=10% Similarity=0.008 Sum_probs=158.4
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
....+..+..-+.+|....+|++|...+.++.+-.+. .....+.+..+-..+........+.++..++++|..++.+..
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn-nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 3344555666778888999999999999998876654 233345566677788888889999999999999999988763
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
. |+.+..-...+--....-++++|+.+|++++.+.+... ........+...++++....++++|-..+.+-..+.
T Consensus 106 s---pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 106 S---PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred C---cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence 3 33333333444455677899999999999999986632 223345667788999999999999999998877776
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (519)
.+.- ..+.....+.....+|....+|..|..+++..-++-. -..+.-..+..+|-..| ..|+.++....+.
T Consensus 181 ~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~------f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 181 DKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA------FLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc------ccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 6542 2344445566666677778899999999998766521 12233344445555544 4577776655543
No 146
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.92 E-value=4.4e-08 Score=99.53 Aligned_cols=209 Identities=16% Similarity=0.120 Sum_probs=189.7
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (519)
....|......|.+.+|.+ .-+++.+.....+.-++..+..+..++.++...|++++|+.+-.++.-+.++..+.+++.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 4566777778889999999 888888888888888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (519)
....+.+++......++...|...+.++..+..-.+++++|..+.+..+++.++...++++.|+.+.+.|.....+. .
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v--~ 1091 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV--L 1091 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh--c
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999976664 5
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417 (519)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 417 (519)
++.+......+..+++.+...+++..|....+....++...+|.++.....+
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S 1143 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKES 1143 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhh
Confidence 6677777888899999999999999999999999999999999888765543
No 147
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.92 E-value=1e-07 Score=79.01 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=88.1
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (519)
..+..+..++.+|..+...|++++|+.+|++++.... +.+....++..+|.++...|++++|+.+++++++.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 3456667799999999999999999999999988642 23344678999999999999999999999999987
Q ss_pred hcCCCChhhHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHHhcC
Q 010063 278 NRGTESADLVLPLFSLGSLFIKEGK-------AVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~ 322 (519)
.|.....+..+|.++...|+ +++|+..++++++.+++...
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 34456777788888877655 66666666777666655543
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=6.9e-08 Score=82.53 Aligned_cols=123 Identities=12% Similarity=0.066 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 238 (519)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 238 (519)
...++.+..-|.-.+..++|.+|+..|.+|+.+. |..+..|.+.+.+|.+.|.++.|++-.+.++.+
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------ 144 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD-------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------ 144 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 3456677888999999999999999999999886 555666889999999999999999999999986
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHH
Q 010063 239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV 304 (519)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 304 (519)
+|....+|..||.+|..+|++++|++.|++++++ .|+......+|..+-...++..
T Consensus 145 --Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 --DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred --ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 5777999999999999999999999999999998 4555555566665555554444
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.87 E-value=1.2e-07 Score=73.54 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (519)
.+++.+|..+...|++++|+..+.+++.. .++++....++..+|.++...|++++|+.++++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 46788999999999999999999999875 23344556788999999999999999999999998753 344
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
+....++..+|.++...|++++|..+++++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 445677899999999999999999999999987
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.87 E-value=6.5e-08 Score=75.03 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (519)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (519)
.+++.+|..+...|++++|+..+.+++.. .++++....++..+|.++...|++++|+.++++++... +
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-------YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----P 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----C
Confidence 36788999999999999999999999876 34444445667889999999999999999999998753 3
Q ss_pred CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
+++....++..+|.++...|++++|..++++++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 44455678899999999999999999999999885
No 151
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=5.9e-07 Score=82.00 Aligned_cols=153 Identities=18% Similarity=0.123 Sum_probs=123.9
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
+......+..+..++..|++++|+..++..+. +.|+....+...+.++...|+.++|.+.+++++..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----- 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIA--------AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL----- 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 34567788889999999999999999999766 45677777788899999999999999999999987
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
.|+.+ ....++|..|.+.|++.+|+..++..+. +.|+....|..||..|..+|+..+|...
T Consensus 370 --~P~~~---~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A------ 430 (484)
T COG4783 370 --DPNSP---LLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLA------ 430 (484)
T ss_pred --CCCcc---HHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHH------
Confidence 33333 3457899999999999999999888765 5677778899999999999988776543
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.+..|+..|++++|+..+..+.+..
T Consensus 431 -------------------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 -------------------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -------------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 3455667889999999988887654
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.79 E-value=2.1e-07 Score=70.30 Aligned_cols=101 Identities=31% Similarity=0.264 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (519)
+.+.+|.++-..|+.++|+.+|++++.. +.+.+....++..+|..+...|++++|+..+++++... ++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-------gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-------GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 5667888888888888888888888774 44455556677888888888888888888888876532 22
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
.+........++.++...|++++|+..+-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222444555677788888888888888776665
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.77 E-value=1.2e-07 Score=88.12 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=87.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
+...|..++..|++++|+..|+++++. .|..+.++..+|.++...|++++|+..+++++.+. |
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~----------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-------P 67 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL----------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-------P 67 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c
Confidence 667889999999999999999999998 77778899999999999999999999999998875 4
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
....+++.+|.++...|++++|+..|++++.+
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45567999999999999999999999999986
No 154
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.75 E-value=7.8e-05 Score=73.63 Aligned_cols=264 Identities=11% Similarity=0.017 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC--CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063 163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK--DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (519)
Q Consensus 163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (519)
..-...++......++.+|..++.++.......+ ......+...-..|.+....|++++|+++.+.++...... .
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~ 492 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---A 492 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---c
Confidence 3444557777889999999999988776654311 1112334434455777888999999999999998865332 2
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
....+.++..+|.+..-.|++++|..+..++.++.+... .......+....+.++..+|+...|. -.++.......
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q 568 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQ 568 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHH
Confidence 234466788899999999999999999999999987753 23334556667788999999333332 22222222222
Q ss_pred cCCCChh---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063 321 YGENDGR---VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (519)
Q Consensus 321 ~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (519)
.....+. ...+...+...+. +++.+..-....++..... .+.+......+..|+.++...|+.++|...+.
T Consensus 569 ~l~q~~~~~f~~~~r~~ll~~~~---r~~~~~~ear~~~~~~~~~---~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~ 642 (894)
T COG2909 569 HLEQKPRHEFLVRIRAQLLRAWL---RLDLAEAEARLGIEVGSVY---TPQPLLSRLALSMLAELEFLRGDLDKALAQLD 642 (894)
T ss_pred HhhhcccchhHHHHHHHHHHHHH---HHhhhhHHhhhcchhhhhc---ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1122232 2223333333333 3777777677766664432 23333333334689999999999999999999
Q ss_pred HHHHHHHHhhCCCChhH-HHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063 398 ECLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRIC 441 (519)
Q Consensus 398 ~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (519)
+......... .++.. +.++.........+|+..+|.....+.
T Consensus 643 ~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 643 ELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 9887765431 23332 333334444566789999888877663
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.75 E-value=4.9e-07 Score=68.38 Aligned_cols=102 Identities=28% Similarity=0.305 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 010063 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367 (519)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (519)
.+.+.+|.++...|+.++|+.+|++++.. |...+....++..+|..+...|++++|+..+++++.. .|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-------~p 69 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-------FP 69 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CC
Confidence 35788999999999999999999999884 3445666779999999999999999999999998865 24
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (519)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (519)
+++........++.++...|+.++|+..+-.++.
T Consensus 70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4333344556788999999999999999877664
No 156
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=2.2e-06 Score=78.36 Aligned_cols=132 Identities=20% Similarity=0.204 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
..+.+..+..++..|++++|+..++..+.. .|.....+...+.++...|+..+|.+.+++++..
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-------- 369 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL-------- 369 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence 556778888888999999999998886653 5666777778889999999999999999999885
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
.|.......++|..+.+.|++.+|+..++..+.. .++++ ..|..||..|..+|+..+|...+.+....
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-------~p~dp---~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-------DPEDP---NGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-------CCCCc---hHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 4555567788899999999999888888876654 23333 34567888888888888777776665544
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.72 E-value=1.2e-07 Score=67.95 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=65.4
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHH
Q 010063 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM 209 (519)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (519)
..|+++.|+.+++++++. .+..+ ....+..+|.+++..|++++|+.++++ .... +......+.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~-------~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~~~~~~~~l~ 64 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLEL-------DPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------PSNPDIHYLL 64 (84)
T ss_dssp HTT-HHHHHHHHHHHHHH-------HCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------HCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH-------CCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------CCCHHHHHHH
Confidence 368999999999999987 22123 566777899999999999999999988 3332 3334456677
Q ss_pred HHHHHccccHHHHHHHHHHH
Q 010063 210 GSMYSTLENYEKSMLVYQRV 229 (519)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~a 229 (519)
|.++...|++++|+..++++
T Consensus 65 a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999875
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.69 E-value=6.6e-07 Score=83.22 Aligned_cols=95 Identities=17% Similarity=0.080 Sum_probs=85.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327 (519)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 327 (519)
+...|...+..|++++|+..|++++++ .|....++.++|.++...|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 345688888999999999999999987 5566789999999999999999999999999986 456
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
...++..+|.++...|++++|+..|++++.+
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6678999999999999999999999999987
No 159
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.67 E-value=5.7e-05 Score=72.60 Aligned_cols=207 Identities=13% Similarity=0.169 Sum_probs=120.3
Q ss_pred HHHHH-HHHHHcCChhHHHHHHHH------HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhh
Q 010063 121 LFNEV-KSMIMMGNKNDAIDLLQA------NYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (519)
Q Consensus 121 l~~~~-~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (519)
+++.+ ..+-+..++++|+++|++ ++++.+-.+ +......-...|.-+...|+++.|+..|-++....+
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf-----p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF-----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC-----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 44444 445567788888888875 344443333 444444445677778888899988887755432221
Q ss_pred h----cCC--------------CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 010063 194 S----LKD--------------DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 255 (519)
Q Consensus 194 ~----~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 255 (519)
. ++. +.......|-.++.-|...|+|+.|.++|.++-.. ..-...|
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my 801 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMY 801 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHH
Confidence 1 000 00001111334566667777777777776654211 1123456
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHH------HHHHHHHHHhcCC------
Q 010063 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF------SRILKIYTKVYGE------ 323 (519)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~------ 323 (519)
.+.|++..|.++-++.. ........|...+.-+-..|+|.+|+.+| .+++.++.+..-.
T Consensus 802 ~k~~kw~da~kla~e~~---------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECH---------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred hccccHHHHHHHHHHhc---------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHH
Confidence 66777777666554442 13345566667777777888888877766 4556665544211
Q ss_pred ---CChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 324 ---NDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 324 ---~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
.|++ ...+...+|.-+...|+...|...|-++-+
T Consensus 873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 1222 334566778888888888888887776544
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.66 E-value=2.1e-07 Score=66.64 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=65.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010063 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (519)
Q Consensus 216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (519)
+|+++.|+.+++++++... .++ ....+..+|.+|+..|++++|+.++++ .+. .+........+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence 6899999999999998742 123 455677799999999999999999998 443 2334566777899
Q ss_pred HHHhCCCHHHHHHHHHHH
Q 010063 296 LFIKEGKAVDAESVFSRI 313 (519)
Q Consensus 296 ~~~~~g~~~~A~~~~~~a 313 (519)
++..+|++++|+..++++
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
No 161
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=3.2e-05 Score=63.77 Aligned_cols=197 Identities=15% Similarity=0.141 Sum_probs=126.9
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010063 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC 333 (519)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 333 (519)
.+.-.+++++|.++|.++-.+ |....+|..|-..|.++-+...+.. +..+.+.+|.
T Consensus 23 lfgg~~k~eeAadl~~~Aan~----------------------yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~Yv 78 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANM----------------------YKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYV 78 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHH
Confidence 334456888888888877554 3334455666666666666555542 2234455555
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhhCCCCh
Q 010063 334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHP 412 (519)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~ 412 (519)
..+.+| +.+++++|..+++++++++..+ ......+..+..+|.+|... .++++|+.+|+++-+.+...- ...
T Consensus 79 eA~~cy-kk~~~~eAv~cL~~aieIyt~~----Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--s~s 151 (288)
T KOG1586|consen 79 EAANCY-KKVDPEEAVNCLEKAIEIYTDM----GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--SVS 151 (288)
T ss_pred HHHHHh-hccChHHHHHHHHHHHHHHHhh----hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--hhh
Confidence 555555 4459999999999999998774 22333445567889998865 899999999999998875431 122
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc----hhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS----ISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
..-.++...|..-...++|.+|+..|++.....- +++. .-.-+..-|.++....+.-.+...+++..++
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~-----~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL-----DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 2335666778888888999999999998766321 2221 1222344566666667766665555555443
No 162
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.63 E-value=3.1e-07 Score=62.96 Aligned_cols=64 Identities=19% Similarity=0.378 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKI 316 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 316 (519)
+.++..+|.++...|++++|+.+|++++++ +|....++.++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567889999999999999999999999998 5777899999999999999 799999999999985
No 163
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.62 E-value=2.3e-05 Score=66.31 Aligned_cols=175 Identities=15% Similarity=0.142 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
...+++.+...++.|++++|++.|+..... .+..|....+...++.+++..+++++|+...++-+... +
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----P 102 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----P 102 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----C
Confidence 345899999999999999999999988755 55577778899999999999999999999999988876 7
Q ss_pred CchHHHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHHHHHhcCCCCH--------------HHHHHHHHHHHHHhhc
Q 010063 198 DEPLLDAILLHMGSMYSTL-----ENYEKSMLVYQRVINVLESRYGKTSI--------------LLVTSLLGMAKVLGSI 258 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~ 258 (519)
.+|....+++..|.+++.. .+...+...+...-++..+. |+++ .++.--..+|..|.+.
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr 180 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKR 180 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888888888886643 23333333333333333322 2222 1222334678899999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 010063 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310 (519)
Q Consensus 259 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 310 (519)
|.+..|+..++.+++-.. +.+....++..+...|..+|-.++|...-
T Consensus 181 ~~~~AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 181 GAYVAAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred cChHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999999999988643 34556778889999999999999987653
No 164
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.61 E-value=0.00097 Score=67.35 Aligned_cols=358 Identities=13% Similarity=0.071 Sum_probs=218.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHH-HhcCCCChHHHHHHHHHHH--HHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQ-INAGNKGIEEVAILDIIAL--GYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
.+-.+......+..+++++..+++....+.. ..... .++...++..+-. ++...|+++.+...+++.....+....
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~ 260 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKK 260 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 4444555567788899999999998776654 22222 4444555554443 456788888888877765554433211
Q ss_pred Cc-------------------------h----------HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC---C
Q 010063 198 DE-------------------------P----------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---K 239 (519)
Q Consensus 198 ~~-------------------------~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~ 239 (519)
.. + ...-++..-|......|..++|.++++++++..++... .
T Consensus 261 ~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~ 340 (608)
T PF10345_consen 261 SPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPS 340 (608)
T ss_pred CccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCC
Confidence 10 1 11223444466677778888999999999999888651 1
Q ss_pred CCH---------------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHhCCCH
Q 010063 240 TSI---------------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT-ESADLVLPLFSLGSLFIKEGKA 303 (519)
Q Consensus 240 ~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~ 303 (519)
..+ .....+...+.+....|++.+|....+.+.+...+...+ ........++..|..+...|+.
T Consensus 341 ~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l 420 (608)
T PF10345_consen 341 APSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDL 420 (608)
T ss_pred CCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCH
Confidence 100 123345567778888999999999999888776554321 1233466778889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 010063 304 VDAESVFSRILKIYTKVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380 (519)
Q Consensus 304 ~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la 380 (519)
+.|..+|.+..-.......+. ..-...+..|+..++...+.-.....-+.+.++..+.... .........++..+-
T Consensus 421 ~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~-~~~~~~~~~a~~~~~ 499 (608)
T PF10345_consen 421 EAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCS-NSPNSYNRTAYCLVL 499 (608)
T ss_pred HHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcccc-CCccHHHHHHHHHHH
Confidence 999999985553332222222 2224456667788887766544422222333332211100 111122222222222
Q ss_pred HHHH--HcCChHHHHHHHHHHHHHH-HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchh
Q 010063 381 ELLH--IVGRGQEGRELLEECLLIT-EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS 457 (519)
Q Consensus 381 ~~~~--~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 457 (519)
..+. ..-...++...+.++++.. ... .+......++..++..++ .|+..+.......+.....+. ++.....
T Consensus 500 ~~~~~~~~~~~ne~k~~l~~~L~~~~~~~--~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~d~~~~L 574 (608)
T PF10345_consen 500 ATYNTFEPFSSNEAKRHLQEALKMANNKL--GNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--SDYSDQL 574 (608)
T ss_pred HHHhhCCccccHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--hhhhhHH
Confidence 2222 2234458999999999988 444 234445556777777777 889888888888888877665 2222323
Q ss_pred H---HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 458 F---PMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 458 ~---~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
. +-..++..+...|+.++|.....+.-.
T Consensus 575 W~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 575 WHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 2 333567778899999999998877654
No 165
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2e-06 Score=77.11 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=108.5
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (519)
....-|+.|++.|+|..|...|++++.........+.. ....++.|++.++.++++|.+|+....+++.+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--- 286 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--- 286 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 35677999999999999999999999887643222211 34567899999999999999999999999987
Q ss_pred hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH-HHHHHHHH
Q 010063 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA-VELYKKAL 356 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al 356 (519)
.+....+++.-|.++..+|+++.|+..|++++++ .|..-.+...+..+-.+..++.+. .+.|..+.
T Consensus 287 -----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 287 -----DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred -----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667899999999999999999999999999996 344445556666665554444433 56666666
Q ss_pred HHH
Q 010063 357 RVI 359 (519)
Q Consensus 357 ~~~ 359 (519)
...
T Consensus 354 ~k~ 356 (397)
T KOG0543|consen 354 AKL 356 (397)
T ss_pred hcc
Confidence 543
No 166
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=1.1e-05 Score=82.66 Aligned_cols=210 Identities=16% Similarity=0.104 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
+|.....|...-..+...++.++|.+..++|+....-..+........++.||-. .-|.-+.-.+.|++|.+.+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn---~yG~eesl~kVFeRAcqyc--- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN---AYGTEESLKKVFERACQYC--- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH---hhCcHHHHHHHHHHHHHhc---
Confidence 3444555666667788899999999999999976411111112233444444444 4456677778888888764
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010063 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (519)
+....+..|..+|...+++++|.++++.+++.+.+. ...|..++..+.++++-+.|..++.+|+
T Consensus 1528 ------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~----------~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1528 ------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT----------RKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred ------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 223467889999999999999999999999986532 4567889999999999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHH
Q 010063 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (519)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (519)
....+. .| .......|.+-++.|+.+.+..+|+..+. .+|...+.|..+...-.+.|+.+.+..+|
T Consensus 1592 ~~lPk~---eH---v~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1592 KSLPKQ---EH---VEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred hhcchh---hh---HHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 876442 23 35566778899999999999999998887 45777777888888888899999999999
Q ss_pred HHHHHH
Q 010063 481 LEALYI 486 (519)
Q Consensus 481 ~~a~~~ 486 (519)
++++.+
T Consensus 1658 eRvi~l 1663 (1710)
T KOG1070|consen 1658 ERVIEL 1663 (1710)
T ss_pred HHHHhc
Confidence 888774
No 167
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.60 E-value=2.3e-06 Score=75.12 Aligned_cols=103 Identities=14% Similarity=0.073 Sum_probs=89.3
Q ss_pred HHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063 120 ELFNEVKSM-IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (519)
Q Consensus 120 ~l~~~~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (519)
..+..+..+ ...|+|++|+..|+..++. .++.+..+.+++.+|.+|+..|++++|+..|+.++... ++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y----P~ 212 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK-------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY----PK 212 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CC
Confidence 356666665 6679999999999999987 55566668899999999999999999999999988775 66
Q ss_pred chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (519)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (519)
++....+++.+|.++...|++++|...|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67888889999999999999999999999988764
No 168
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=3.1e-05 Score=79.58 Aligned_cols=248 Identities=15% Similarity=0.159 Sum_probs=177.8
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
|.-+..|......+.+.++.++|.+..++|+....-.-+.....+..++.|+-.. -|.-+.-.+.|++|.+.+.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYCD--- 1528 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhcc---
Confidence 5555557777777889999999999999999865211111122344445554444 4566777788888887642
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
...++..|..+|...+++++|.++++..++-+. ....+|...+..++.+.+-+.|...+.+|+...
T Consensus 1529 ------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1529 ------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred ------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 246788899999999999999999999998653 345678889999999999999999999999985
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010063 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (519)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (519)
.+ ..|. ......|.+-++.|+.+.+..+|+..+. .+|...+.|..+...-...|+.+.+..+|+
T Consensus 1595 Pk-----~eHv---~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1595 PK-----QEHV---EFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred ch-----hhhH---HHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 43 1232 3346678999999999999999998876 356666778888888899999999999999
Q ss_pred HHHHHHHHhcCCCCcchhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHH
Q 010063 440 ICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIREI 489 (519)
Q Consensus 440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 489 (519)
+++.+. -.+..+..++..=.-|. ..|+-+.....=.+|.+..+.
T Consensus 1659 Rvi~l~------l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s 1703 (1710)
T KOG1070|consen 1659 RVIELK------LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVES 1703 (1710)
T ss_pred HHHhcC------CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHH
Confidence 999842 12333333333333333 346655555555566655543
No 169
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.59 E-value=4.7e-07 Score=62.05 Aligned_cols=64 Identities=27% Similarity=0.451 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 010063 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRV 358 (519)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 358 (519)
+..+..+|.++...|++++|+.+|++++++ +|....++.++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 578899999999999999999999999996 5777889999999999999 799999999999986
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.59 E-value=2.3e-06 Score=75.12 Aligned_cols=102 Identities=10% Similarity=0.110 Sum_probs=86.9
Q ss_pred HHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063 331 AMCSLAHAK-CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (519)
Q Consensus 331 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (519)
..+..|..+ ...|++++|+..|++.++. .|+......+++.+|.+|...|++++|+..|++++..+ +
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P 211 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK-------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----P 211 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 445555544 5679999999999999987 35566666788999999999999999999999998764 4
Q ss_pred CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
+++....++..+|.++...|++++|...|+++++.
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999884
No 171
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=6.2e-05 Score=63.56 Aligned_cols=250 Identities=16% Similarity=0.092 Sum_probs=158.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA 204 (519)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 204 (519)
++.++-.|+|..++...++.-. .+........+...|..+|.+...+.-... +. .+...
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~-----------~~~~~e~d~y~~raylAlg~~~~~~~eI~~--------~~-~~~lq- 73 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSS-----------SKTDVELDVYMYRAYLALGQYQIVISEIKE--------GK-ATPLQ- 73 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcc-----------ccchhHHHHHHHHHHHHccccccccccccc--------cc-CChHH-
Confidence 4556678888888776554321 224555667788889999988765443322 11 12222
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (519)
+...++.+...-++.++-+.-..+-+.. .........+..-|.+|..-|++++|.+.......+
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l---------- 137 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL---------- 137 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH----------
Confidence 2455666666666655554444433221 111222334445688999999999999988774332
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Q 010063 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 360 (519)
.+...-..++.++.+.+-|...++++.++-+. .++..||..+.. .+++.+|.-+|++.-+..
T Consensus 138 ---E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided----------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~- 203 (299)
T KOG3081|consen 138 ---EAAALNVQILLKMHRFDLAEKELKKMQQIDED----------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT- 203 (299)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-
Confidence 22233346677888899999998888876322 134445554443 345777777777654321
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (519)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (519)
++. ..+++.++.+...+|++++|...++.++. ..+....++.|+..+-...|...++.+-+-.
T Consensus 204 -----~~T----~~llnG~Av~~l~~~~~eeAe~lL~eaL~--------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 204 -----PPT----PLLLNGQAVCHLQLGRYEEAESLLEEALD--------KDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred -----CCC----hHHHccHHHHHHHhcCHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 111 34568899999999999999999999987 3444567888888888888988777665544
Q ss_pred HH
Q 010063 441 CL 442 (519)
Q Consensus 441 al 442 (519)
-+
T Consensus 267 QL 268 (299)
T KOG3081|consen 267 QL 268 (299)
T ss_pred HH
Confidence 33
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.56 E-value=1.1e-06 Score=64.98 Aligned_cols=96 Identities=25% Similarity=0.317 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010063 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 454 (519)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 454 (519)
++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++... |
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 35788999999999999999999988752 2233678899999999999999999999998742 3
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
....++..+|.++...|++++|..++.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33367789999999999999999999988764
No 173
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.55 E-value=0.00012 Score=70.42 Aligned_cols=210 Identities=19% Similarity=0.188 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHH------HHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHR------VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (519)
..|-.-|.+|.+..++++|+++|++ ++++.+-.+ +......-...|.-+...|+++.|+..|-++-...+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 3455567777888888888888764 455544332 2233444455677778888899888887665332221
Q ss_pred h---cC-CCChh-------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 010063 320 V---YG-ENDGR-------------VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL 382 (519)
Q Consensus 320 ~---~~-~~~~~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~ 382 (519)
+ .+ ...+. ....|..++.-|...|+|+-|.++|.++-.. ..-...
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~------------------~dai~m 800 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF------------------KDAIDM 800 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh------------------HHHHHH
Confidence 1 00 00010 1112344566677777777777777654221 223455
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH------HHHHHHHHHhc-------
Q 010063 383 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL------RICLDIMTKTV------- 449 (519)
Q Consensus 383 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~------- 449 (519)
|-+.|++..|..+-++.. + ...+...|...+.-+-..|+|.+|..+| .+++.++.+..
T Consensus 801 y~k~~kw~da~kla~e~~-------~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECH-------G--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred HhccccHHHHHHHHHHhc-------C--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHH
Confidence 667777777766655432 1 2334455666666666777776666555 34444443321
Q ss_pred --CCCCcc-hhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 450 --GPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 450 --~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
+..|++ ...+...+|.-|...|+...|...|-++-+
T Consensus 872 lv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 872 LVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 112332 345667889999999999999888766644
No 174
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.54 E-value=0.00048 Score=61.92 Aligned_cols=253 Identities=19% Similarity=0.166 Sum_probs=147.2
Q ss_pred HhcCChHHHHHHHHHHHhhhhh-cCCCchHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHh--cCCCC----HHH
Q 010063 173 VYIGDLKFVQSLLDMMSGIVDS-LKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESR--YGKTS----ILL 244 (519)
Q Consensus 173 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~--~~~~~----~~~ 244 (519)
...|+++.|..++.++...... .+.....++..+++.|......+ +++.|..+++++.++.... ....+ ...
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4689999999999998877632 22333457788999999999999 9999999999999997541 01122 245
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
..++..++.+|...+.++...+ ..++++..+...+ ++| ..+..--.+....++.+++.+.+.+++... +
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~---~~~~L~l~il~~~~~~~~~~~~L~~mi~~~------~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKP---EVFLLKLEILLKSFDEEEYEEILMRMIRSV------D 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCc---HHHHHHHHHHhccCChhHHHHHHHHHHHhc------c
Confidence 6788899999999998865444 3444444444332 222 222222223333788999999988888742 1
Q ss_pred Chh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC--ChHHH--HHHHHHH
Q 010063 325 DGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEG--RELLEEC 399 (519)
Q Consensus 325 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A--~~~~~~a 399 (519)
.++ ...........+.. .....|...+...+...-. .+++. ..... -+..++...+ +.... ++..+..
T Consensus 153 ~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~---~~~~~-~~e~~--vl~~~~~~~~~~~~~~~~~i~~l~~~ 225 (278)
T PF08631_consen 153 HSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFK---SSEDQ-WLEKL--VLTRVLLTTQSKDLSSSEKIESLEEL 225 (278)
T ss_pred cccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhC---CChhH-HHHHH--HHHHHHHHcCCccccchhHHHHHHHH
Confidence 111 11111111111222 3345677777666654221 12222 22222 2222333222 22222 4444444
Q ss_pred HHHHHHhhC-CCChhHH----HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 400 LLITEKYKG-KEHPSFV----THLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 400 l~~~~~~~~-~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
+....+..+ +-.+... ..+.+.|.-.++.++|++|..+|+-++.
T Consensus 226 ~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 226 LSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 443333222 2222222 3445678889999999999999997764
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.53 E-value=3.9e-07 Score=61.58 Aligned_cols=60 Identities=25% Similarity=0.230 Sum_probs=54.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.+|..+...|++++|+..|++++. .+|....++..+|.++..+|++++|+.+|++++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 578999999999999999999987 468889999999999999999999999999999764
No 176
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.53 E-value=3.2e-05 Score=65.23 Aligned_cols=243 Identities=14% Similarity=0.118 Sum_probs=166.0
Q ss_pred cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (519)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (519)
..+.++|+..|++++++- +.....-..++-.+..+++..|++++-+..|.+.+...+.....+... .+.+.+-..
T Consensus 40 e~~p~~Al~sF~kVlelE---gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDy 114 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE---GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDY 114 (440)
T ss_pred ccCHHHHHHHHHHHHhcc---cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHH
Confidence 447889999999988876 444455556788899999999999999999999998876654444331 122223233
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHH
Q 010063 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGM 330 (519)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~ 330 (519)
-....+.+--...|+..++..+... +......+-..||.+|...|+|.+-.+.+++.-..++.--|.++. ....
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE 192 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE 192 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence 3344455555667777776665543 233344556679999999999999988888888777665554432 2455
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (519)
+|..-..+|..+++-.+-..+|++++.+-.. -|.+.....+...=|..+.+.|++++|-.-|-+|.+-+.+...+
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSA----IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp- 267 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSA----IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP- 267 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhcc----CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-
Confidence 6666677888888888888999999987544 24455555555556778889999999988888887766655322
Q ss_pred ChhHHHHHHHHHHHHHhcc
Q 010063 411 HPSFVTHLLNLAASYSRSK 429 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g 429 (519)
.....--|..||..+.+.|
T Consensus 268 RRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 268 RRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred chhHHHHHHHHHHHHHHcC
Confidence 2222333455666666554
No 177
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.53 E-value=1.1e-06 Score=64.87 Aligned_cols=96 Identities=26% Similarity=0.390 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (519)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (519)
++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|..++++++... +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 4678899999999999999999999876 23334778899999999999999999999998752 3
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
....++..+|.++...|++++|..++.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33367889999999999999999999988764
No 178
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=7.5e-05 Score=61.65 Aligned_cols=196 Identities=14% Similarity=0.122 Sum_probs=126.0
Q ss_pred HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010063 214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL 293 (519)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 293 (519)
.-.+.+++|.++|.++-.++ ....++..|-..|.++-+...+.. +..+.+.+|...
T Consensus 25 gg~~k~eeAadl~~~Aan~y----------------------klaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA 80 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANMY----------------------KLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEA 80 (288)
T ss_pred CCCcchHHHHHHHHHHHHHH----------------------HHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHH
Confidence 34457888888887765543 333445555555556655554443 223445666666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCchHH
Q 010063 294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIM 372 (519)
Q Consensus 294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 372 (519)
+.+|.+ +++++|+..++++++++.... .-...+.-+..+|.+|... .++++|+.+|+++-+.++.. ......
T Consensus 81 ~~cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e----es~ssA 153 (288)
T KOG1586|consen 81 ANCYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE----ESVSSA 153 (288)
T ss_pred HHHhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch----hhhhhH
Confidence 666654 589999999999999887652 2223445566788888765 89999999999999987642 223334
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
..++...+..-...++|.+|+..|++....... .. ....-..+..-|.|++...+.-.+...+++-.+
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~---n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD---NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 456667777778889999999999986553211 11 011223445567777777777666655555444
No 179
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.00026 Score=65.05 Aligned_cols=304 Identities=14% Similarity=0.084 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH--HHHHHHHHHHccccHHHHHHHHHHHHH-HHHHh
Q 010063 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA--ILLHMGSMYSTLENYEKSMLVYQRVIN-VLESR 236 (519)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~ 236 (519)
+.+..+...+..++..|++.+|.+.+...--....-+...|.... .++++|.++++.|.|.-+..+|.+|++ .....
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 345567778889999999999999886532222222223344333 357999999999999999999999996 33332
Q ss_pred cCC---C------CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC-----
Q 010063 237 YGK---T------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----- 302 (519)
Q Consensus 237 ~~~---~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----- 302 (519)
-.. . .......+++.|..|...|++-.|.++|.++...+... ...|..++.++....+
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--------PrlWLRlAEcCima~~~~l~e 389 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--------PRLWLRLAECCIMALQKGLLE 389 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHhhhhhhh
Confidence 111 0 11345678999999999999999999999999886542 2344445544432100
Q ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHh------------------
Q 010063 303 --------------------------------------------AVDAESVFSRILKIYTKV------------------ 320 (519)
Q Consensus 303 --------------------------------------------~~~A~~~~~~al~~~~~~------------------ 320 (519)
.+=|.-+++.++-+..+.
T Consensus 390 e~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~ 469 (696)
T KOG2471|consen 390 EGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGS 469 (696)
T ss_pred hccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCC
Confidence 122333444444332100
Q ss_pred ----------------c-------CCCChh--------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063 321 ----------------Y-------GENDGR--------VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369 (519)
Q Consensus 321 ----------------~-------~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (519)
. .+..|. ....+.+.+.+-...|+.-.|+...++.++..+-. ...
T Consensus 470 ~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS----~~~ 545 (696)
T KOG2471|consen 470 SSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLS----KIY 545 (696)
T ss_pred CCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhh----hHH
Confidence 0 001111 12345566777788999999999998888764321 111
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHH------HH--HHHhhCC-------------C-------Chh--HHHHHH
Q 010063 370 SIMENMRIDLAELLHIVGRGQEGRELLEECL------LI--TEKYKGK-------------E-------HPS--FVTHLL 419 (519)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------~~--~~~~~~~-------------~-------~~~--~~~~~~ 419 (519)
... -+..-|.++....+..+|...+.--+ .+ .+.-++. . .++ ......
T Consensus 546 kfL--GHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~ 623 (696)
T KOG2471|consen 546 KFL--GHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFA 623 (696)
T ss_pred HHH--HHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHH
Confidence 111 12234555566778888877664311 00 0000000 0 111 224578
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (519)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (519)
+||.++.-+|++++|..++..+..+..+. ..+. + ...--.+-..+|+...|...+++.
T Consensus 624 nLa~a~alq~~~dqAk~ll~~aatl~hs~---v~~~-A--~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 624 NLAAALALQGHHDQAKSLLTHAATLLHSL---VNVQ-A--TVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhhcc---ccHH-H--HHHHHHHHHhcCCCcchHHHHHhc
Confidence 99999999999999999999998875432 1111 1 111112234679999988877765
No 180
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.48 E-value=2.1e-05 Score=58.36 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (519)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (519)
.+-..+..+...|+.+.|++.|.+++.+ -|..+.+|++.+..+.-+|+.++|+.-+++++++. ++..
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l----------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~~t 111 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL----------APERASAYNNRAQALRLQGDDEEALDDLNKALELA---GDQT 111 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh----------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc---Cccc
Confidence 3555777889999999999999999998 88889999999999999999999999999999987 5555
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
.....++...|.+|..+|+.+.|..-|+.+-++
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 666677889999999999999999999998776
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.48 E-value=1.3e-06 Score=58.91 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=54.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
.+|..+...|++++|+..|+++++ .+|....++..+|.++..+|++++|+.+|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 578999999999999999999997 56889999999999999999999999999999987
No 182
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=2.1e-06 Score=73.22 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
+++.+..++..|+|..|...|..-++. .++.+..+.++++||.+++.+|++++|...|..+.+-. +++|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-------YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~----P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-------YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY----PKSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC----CCCC
Confidence 889999999999999999999998876 77788899999999999999999999999999888765 6667
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (519)
....+++.+|.+....|+.++|...++++++.+
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 777889999999999999999999999988764
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.45 E-value=0.00016 Score=61.41 Aligned_cols=172 Identities=16% Similarity=0.127 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (519)
-+..+++-|......|++++|...|+..... .+..|..-.+...++..+.+.+++++|+...++-+..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l------- 100 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL------- 100 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-------
Confidence 3567888899999999999999999988753 2344556778899999999999999999999999887
Q ss_pred CCCchHHHHHHHHHHHHHHHc-----CChH---HHHHHHHHHHHHHHHhhCCCChh--------------HHHHHHHHHH
Q 010063 366 SLDDSIMENMRIDLAELLHIV-----GRGQ---EGRELLEECLLITEKYKGKEHPS--------------FVTHLLNLAA 423 (519)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~-----g~~~---~A~~~~~~al~~~~~~~~~~~~~--------------~~~~~~~la~ 423 (519)
.|.++....+++..|.++... .+.. +|..-+++.+..+ |+.+. .+.--..+|.
T Consensus 101 yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 101 YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred CCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777776643 2233 3444444444332 12211 1122245688
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063 424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479 (519)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 479 (519)
.|.+.|.+..|+..++++++-. ++.+....++..+..+|..+|-.++|.+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999999999999999999854 44566778889999999999999988765
No 184
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=8.7e-06 Score=73.08 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch--------HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP--------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (519)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (519)
+.....-|..|++.|+|..|...|++++.....-...++ ....++.+++.++..+++|.+|+....+++.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 334456789999999999999999998887753222222 13346889999999999999999999999986
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHH-HHHHHH
Q 010063 234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA-ESVFSR 312 (519)
Q Consensus 234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~ 312 (519)
.+....+++..|.++...|+|+.|+..|++++++ .|..-.+...+..+-....++.+. .+.|.+
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445889999999999999999999999999998 444556666666665544444333 455555
Q ss_pred HHH
Q 010063 313 ILK 315 (519)
Q Consensus 313 al~ 315 (519)
++.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 554
No 185
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=2.6e-05 Score=63.54 Aligned_cols=204 Identities=16% Similarity=0.096 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
...+..++..|..|-..|-..-|.--+.+++.+ .|..+.+++.+|..+...|+++.|.+.|...+++
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----- 128 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 128 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence 455677888899999999999999999999987 6778899999999999999999999999999885
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH-HHH
Q 010063 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE-ECL 400 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al 400 (519)
+|..-.+..|.|..+..-|++.-|.+-+.+-.+. ++.+|... .|..+. ...-+..+|..-+. ++.
T Consensus 129 ---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-------D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 129 ---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-------DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQRAE 194 (297)
T ss_pred ---CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-------CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHHHH
Confidence 5666667888999999999999998776654443 34455432 111111 12335556654433 332
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHH
Q 010063 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (519)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (519)
...++. ..+ ++...| .|+..+ ...++++....+.. ..-......+++.||..+...|+..+|..+|
T Consensus 195 ~~d~e~---------WG~-~iV~~y--LgkiS~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf 260 (297)
T COG4785 195 KSDKEQ---------WGW-NIVEFY--LGKISE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALF 260 (297)
T ss_pred hccHhh---------hhH-HHHHHH--HhhccH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 221111 111 111112 122211 12233333221100 0001234567889999999999999999999
Q ss_pred HHHHHH
Q 010063 481 LEALYI 486 (519)
Q Consensus 481 ~~a~~~ 486 (519)
+-++.-
T Consensus 261 KLaian 266 (297)
T COG4785 261 KLAVAN 266 (297)
T ss_pred HHHHHH
Confidence 988763
No 186
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=8.6e-05 Score=60.60 Aligned_cols=205 Identities=14% Similarity=0.080 Sum_probs=132.7
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
+.+.+..++..|..|-..|-+.-|..-|.+++.+. |..+.+++.+|..+...|+++.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence 55667788888999999999999999999988876 777778999999999999999999999988876
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS-RILKI 316 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~ 316 (519)
+|..--+..+.|..++.-|++.-|.+-+.+-.+- ++++|.... |..+ -...-++.+|..-+. ++...
T Consensus 129 ---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~L-WLYl---~E~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 129 ---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSL-WLYL---NEQKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred ---CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHH-HHHH---HHhhCCHHHHHHHHHHHHHhc
Confidence 3444556778899999999999998877665543 233343221 1111 122345666665443 33221
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 010063 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 396 (519)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 396 (519)
+... .-++ +...| .|+..+ ...++++.....+. ..-......+++.+|..+...|+.++|..+|
T Consensus 197 -------d~e~--WG~~-iV~~y--LgkiS~-e~l~~~~~a~a~~n---~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf 260 (297)
T COG4785 197 -------DKEQ--WGWN-IVEFY--LGKISE-ETLMERLKADATDN---TSLAEHLTETYFYLGKYYLSLGDLDEATALF 260 (297)
T ss_pred -------cHhh--hhHH-HHHHH--HhhccH-HHHHHHHHhhccch---HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 1111 1121 11222 232211 12233333322110 0112334567889999999999999999999
Q ss_pred HHHHHH
Q 010063 397 EECLLI 402 (519)
Q Consensus 397 ~~al~~ 402 (519)
+-++..
T Consensus 261 KLaian 266 (297)
T COG4785 261 KLAVAN 266 (297)
T ss_pred HHHHHH
Confidence 988763
No 187
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.41 E-value=0.0013 Score=59.10 Aligned_cols=253 Identities=17% Similarity=0.130 Sum_probs=145.4
Q ss_pred HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHH-hc-CCCC----hhh
Q 010063 214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILEL-NR-GTES----ADL 286 (519)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-~~-~~~~----~~~ 286 (519)
+.+|+++.|..++.++-..............+..+++.|......+ ++++|..+++++.++.+. .. ...+ ...
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 5789999999999999877642211222367888999999999999 999999999999999755 11 1112 234
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010063 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366 (519)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 366 (519)
..++..++.+|...+.++...+ ..++++..+..++ ++|... ..--.+..+.++.+++.+.+.+++....-
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~---~L~l~il~~~~~~~~~~~~L~~mi~~~~~----- 153 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF---LLKLEILLKSFDEEEYEEILMRMIRSVDH----- 153 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH---HHHHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence 6688899999999888764444 4445555544432 233322 11222333378899999999888876321
Q ss_pred CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHhcc--CHHHH--HHHHHHH
Q 010063 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSK--NFVEA--ERLLRIC 441 (519)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g--~~~~A--~~~~~~a 441 (519)
++.+ +..+ .....-+.. .....|...+...+...-. ..++ ..... .+-.++...+ +.... ++-.+..
T Consensus 154 ~e~~-~~~~-l~~i~~l~~-~~~~~a~~~ld~~l~~r~~----~~~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~ 225 (278)
T PF08631_consen 154 SESN-FDSI-LHHIKQLAE-KSPELAAFCLDYLLLNRFK----SSEDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEEL 225 (278)
T ss_pred ccch-HHHH-HHHHHHHHh-hCcHHHHHHHHHHHHHHhC----CChhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHH
Confidence 1111 1111 111111222 2335566666665543211 1122 22221 1222222222 22222 3334444
Q ss_pred HHHHHHhc-CCCCcch----hHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010063 442 LDIMTKTV-GPDDQSI----SFPMLHLGITLYHLNRDKEAEKLVLEAL 484 (519)
Q Consensus 442 l~~~~~~~-~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (519)
++...+.. ++-.+.. ...+.+.|...++.++|++|..+|+-++
T Consensus 226 ~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 226 LSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 44333322 2222222 2335667889999999999999999776
No 188
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.40 E-value=4.2e-05 Score=56.78 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (519)
.+-.-|....+.|+.+.|++.|.+++.++ |..+.+|+|.+..+.-+|+.++|++-+++++++. ++.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa------g~~ 110 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA------GDQ 110 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc------Ccc
Confidence 34445778889999999999999999974 6667899999999999999999999999999984 445
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (519)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (519)
......++...|.+|..+|+.+.|..-|+.+-.+.
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 66667788899999999999999999999987753
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.39 E-value=0.0013 Score=58.92 Aligned_cols=262 Identities=13% Similarity=0.090 Sum_probs=174.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE-VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (519)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (519)
.+......|+++.|.+-|+.++. +|+. .--+..+-..-...|+.+.|..+-+.+.... |..
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl~-----------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-------p~l 187 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAMLD-----------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-------PQL 187 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-----------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-------cCC
Confidence 34566789999999999998876 3332 2223333333467899999999999887766 444
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT--SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
..+....-...+..|+++.|+++.+....... .+++...... .+..-+.... ..+...|...-.++.++
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL------ 258 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKL------ 258 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc------
Confidence 44555555667789999999999987665422 2223222222 2222222222 34577888888888776
Q ss_pred CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
.|+.+..-..-+..+...|+..++-.+++.+.+. .-||++... |....--+.++.-++++-.+..
T Consensus 259 --~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~l-------Y~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 259 --APDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALL-------YVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred --CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHH-------HHHhcCCCcHHHHHHHHHHHHh
Confidence 4555666667788999999999999999998874 346665533 3333333455666666655432
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc-cCHHHHHHHHH
Q 010063 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLR 439 (519)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 439 (519)
+.+++ .......+..-...|++..|..-.+.+.... | ...++..|+.+-... |+-.++..++-
T Consensus 324 ----lk~nn---aes~~~va~aAlda~e~~~ARa~Aeaa~r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 324 ----LKPNN---AESSLAVAEAALDAGEFSAARAKAEAAAREA--------P-RESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred ----cCccc---hHHHHHHHHHHHhccchHHHHHHHHHHhhhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 23333 3344668888899999999988877776542 2 224667788887655 99999999999
Q ss_pred HHHH
Q 010063 440 ICLD 443 (519)
Q Consensus 440 ~al~ 443 (519)
+++.
T Consensus 388 qav~ 391 (531)
T COG3898 388 QAVK 391 (531)
T ss_pred HHhc
Confidence 9887
No 190
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00041 Score=58.76 Aligned_cols=258 Identities=17% Similarity=0.127 Sum_probs=153.1
Q ss_pred HHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010063 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (519)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (519)
-++..|+|..++..-++.... . ........+.+.|..+|.+..-+.-...+ . .+. ..+...
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~-----~---~~~e~d~y~~raylAlg~~~~~~~eI~~~---------~-~~~-lqAvr~ 77 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS-----K---TDVELDVYMYRAYLALGQYQIVISEIKEG---------K-ATP-LQAVRL 77 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc-----c---chhHHHHHHHHHHHHcccccccccccccc---------c-CCh-HHHHHH
Confidence 345578887777665543221 1 12223455677777777765544322211 1 111 223334
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (519)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (519)
++.....-++.++-+.-..+-+.. ............-|.+|...|++++|++.......+ .
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E 138 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-------------E 138 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-------------H
Confidence 455544445444433333332221 112222334445578899999999999988763222 1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHh
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKY 406 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 406 (519)
+...-..++.++.+++-|+..++++.++..+ .++..||..+.. .+++.+|.-+|++.-+
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------------~tLtQLA~awv~la~ggek~qdAfyifeE~s~----- 201 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDED------------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE----- 201 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchH------------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----
Confidence 2222346777888999999988888876332 133556666554 3456677777766432
Q ss_pred hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
..+.+...++.++.++..+|++++|...++.++. ..+....++.++-.+-...|...++..-+-.-+..
T Consensus 202 ---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 202 ---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--------KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred ---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 2344556788999999999999999999999998 33445667778877778888887766544333322
Q ss_pred HHHhcCCCCCcc
Q 010063 487 REIAFGKDSLPV 498 (519)
Q Consensus 487 ~~~~~~~~~~~~ 498 (519)
..+.|+.+
T Consensus 271 ----~~p~h~~v 278 (299)
T KOG3081|consen 271 ----SHPEHPFV 278 (299)
T ss_pred ----cCCcchHH
Confidence 23566654
No 191
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.36 E-value=5.6e-06 Score=70.71 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=91.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010063 376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (519)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (519)
.++.|.-+...|+|.+|...|..-++-+ ++.+....+++.||.+++.+|++++|...|..+..- -|++|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 5778888899999999999999988754 566778889999999999999999999999998883 377888
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
..++++.||.+...+|+.++|...|+++++-+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 89999999999999999999999999999866
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00049 Score=58.08 Aligned_cols=186 Identities=17% Similarity=0.203 Sum_probs=133.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhhhhhcCCCchHHH
Q 010063 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL-KFVQSLLDMMSGIVDSLKDDEPLLD 203 (519)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
+......|+..+.+.-+.......++.. .. ..+|.. +..++.+++-+ .
T Consensus 129 Ae~~~~lgnpqesLdRl~~L~~~V~~ii-----------------~~-~e~~~~~ESsv~lW~KRl-------------~ 177 (366)
T KOG2796|consen 129 AELQQYLGNPQESLDRLHKLKTVVSKIL-----------------AN-LEQGLAEESSIRLWRKRL-------------G 177 (366)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHH-----------------HH-HHhccchhhHHHHHHHHH-------------H
Confidence 3444567888888777766655544332 11 123333 44455554422 2
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (519)
.+.+.+..++.-.|.|.-++..+.+.++. +++........+|.+-+..|+.+.|..+++++-+...+.. +-
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~--~~ 248 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD--GL 248 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--cc
Confidence 34777888889999999999999988773 2233344556789999999999999999998776554443 22
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
.....+..+.+.+|...+++.+|...+.+.+.. ++..+.+.++.|.+....|+...|++.++.+++.
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334567788899999999999999999888763 5666778899999999999999999999998877
No 193
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.32 E-value=1.3e-06 Score=52.94 Aligned_cols=41 Identities=32% Similarity=0.279 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCc
Q 010063 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497 (519)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 497 (519)
+.++.+||.+|..+|++++|..++++++++.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999999985
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.31 E-value=4.4e-05 Score=74.29 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHcccc--------HHHHHHHHHH
Q 010063 160 EEVAILDIIALGYVYIGD---LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN--------YEKSMLVYQR 228 (519)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~ 228 (519)
..+.-++..|..+...++ ...|+.+|++++++. |..+.++-.++.++..... ...+....++
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-------PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345556667777766655 778999999998875 5556566666666544322 2233333333
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHH
Q 010063 229 VINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAES 308 (519)
Q Consensus 229 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 308 (519)
++.+ +..+....++..+|..+...|++++|...+++|+++ .| ...++..+|.++...|++++|++
T Consensus 410 a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~p-s~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 410 IVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EM-SWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred hhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222 112222466777888888899999999999999987 34 36799999999999999999999
Q ss_pred HHHHHHHH
Q 010063 309 VFSRILKI 316 (519)
Q Consensus 309 ~~~~al~~ 316 (519)
.|++|+.+
T Consensus 475 ~~~~A~~L 482 (517)
T PRK10153 475 AYSTAFNL 482 (517)
T ss_pred HHHHHHhc
Confidence 99999986
No 195
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.30 E-value=0.0024 Score=57.25 Aligned_cols=301 Identities=12% Similarity=0.017 Sum_probs=199.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (519)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (519)
+..+......||-..|.++..++-.++. ....+-++..-+..-...|+++.|.+-|+.++.. |.
T Consensus 88 LStGliAagAGda~lARkmt~~~~~lls--------sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--------PE 151 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLS--------SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD--------PE 151 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhh--------ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC--------hH
Confidence 3445555678888999988888765432 2223444555567777899999999999987643 33
Q ss_pred HHH-HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 202 LDA-ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 202 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
... .+..|-.--...|..+.|..+-+++.... |....+....-......|+++.|+++.+.......- +
T Consensus 152 tRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi--e 221 (531)
T COG3898 152 TRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI--E 221 (531)
T ss_pred HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh--c
Confidence 221 12233233356799999999999987764 222334444445667789999999999877654211 1
Q ss_pred CCC--hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 281 TES--ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 281 ~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
++. ...+..+..-+.... ..+...|.....++.++ .|+..-.-..-+..++..|+..++-.+++.+-+.
T Consensus 222 ~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 111 112222332333332 34577888888888775 3555555566788999999999999999988765
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010063 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (519)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (519)
..||.+ +..|....--+.++.-++++-.+.. -.++...+....+..-...|++..|..--
T Consensus 293 --------ePHP~i-------a~lY~~ar~gdta~dRlkRa~~L~s-----lk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 293 --------EPHPDI-------ALLYVRARSGDTALDRLKRAKKLES-----LKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred --------CCChHH-------HHHHHHhcCCCcHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 234443 3445444444566666777655432 34566777888899999999999998887
Q ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 010063 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEALYI 486 (519)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 486 (519)
+.+..+. | ...++..|+.+-... |+-.+...++-+++..
T Consensus 353 eaa~r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 353 EAAAREA--------P-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhhhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 7776632 2 224567888888776 9999999999998863
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.29 E-value=2.7e-05 Score=59.92 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (519)
..++..|...+..|+|++|++.++..... -+.++....+...++.+|+..|++++|+..+++.+++. +.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh----P~ 79 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTR-------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH----PT 79 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC
Confidence 44889999999999999999999887765 55577777899999999999999999999999988874 78
Q ss_pred chHHHHHHHHHHHHHHcccc---------------HHHHHHHHHHHHHHH
Q 010063 199 EPLLDAILLHMGSMYSTLEN---------------YEKSMLVYQRVINVL 233 (519)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~---------------~~~A~~~~~~al~~~ 233 (519)
+|.+..+++..|.+++.+.. ..+|...|++.+..+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 88888889999999888766 667777777666653
No 197
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.28 E-value=4.8e-05 Score=74.00 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHH----HHHHHHHHHhhh
Q 010063 120 ELFNEVKSMIMMGN---KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKF----VQSLLDMMSGIV 192 (519)
Q Consensus 120 ~l~~~~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~ 192 (519)
.++-++..+...++ ...|+.+|++++++ +|+.+.++..++.+|.....+.. .......+....
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l----------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS----------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 35566666665554 78999999999998 88888888888887765433331 111222211111
Q ss_pred hhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (519)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (519)
..+.. .+....++..+|......|++++|...+++|+.+. +. ..+|..+|.++...|++++|++.|++|+
T Consensus 411 ~al~~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 411 VALPE-LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hhccc-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 12223557778888888999999999999999873 22 5789999999999999999999999999
Q ss_pred HH
Q 010063 273 TI 274 (519)
Q Consensus 273 ~~ 274 (519)
.+
T Consensus 481 ~L 482 (517)
T PRK10153 481 NL 482 (517)
T ss_pred hc
Confidence 87
No 198
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=7.8e-05 Score=68.29 Aligned_cols=318 Identities=12% Similarity=0.029 Sum_probs=177.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh-------
Q 010063 164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR------- 236 (519)
Q Consensus 164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------- 236 (519)
.+...+......|.++...++++....+.+..+ |.. ++.--..|+..|..... ...++...+....
T Consensus 19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~---~v~---~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~ 91 (696)
T KOG2471|consen 19 SLLCQAHEQFNNSEFDRCLELLQELETRGESSG---PVL---HNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVS 91 (696)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHhcccccc---cee---eehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchh
Confidence 344445555678889988888877665543221 211 22222334455544322 2222222222111
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
.+-+.......+++.|.+|+....+..|++.....+...+... ....+.+-...-.++....+.++|+.++.-.-++
T Consensus 92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~ 168 (696)
T KOG2471|consen 92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEI 168 (696)
T ss_pred cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223345678889999999999999988887776654432 1222333334445566677778888766543333
Q ss_pred HHHh----cCCC----------ChhHHH-----------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchH
Q 010063 317 YTKV----YGEN----------DGRVGM-----------AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (519)
Q Consensus 317 ~~~~----~~~~----------~~~~~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (519)
.... .|.. .|..+. ........+....+..-+..-.+-+..+ ..+.
T Consensus 169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~-------a~~s-- 239 (696)
T KOG2471|consen 169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI-------AQDS-- 239 (696)
T ss_pred HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh-------cCCC--
Confidence 2211 1100 111110 0111111222223333332222222222 1122
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHHHhccCHHHHHHHHHHHHH-HHHHh
Q 010063 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV--THLLNLAASYSRSKNFVEAERLLRICLD-IMTKT 448 (519)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~ 448 (519)
...+...+..+...|++.+|.+.+... .+.+...+...|... ..++++|.++++.|.|.-+..+|.+|+. ...+.
T Consensus 240 -~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 240 -SMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred -cHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 223456788889999999999887653 222222222233333 3457999999999999999999999996 33332
Q ss_pred cCCCC---------cchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 010063 449 VGPDD---------QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWF 512 (519)
Q Consensus 449 ~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (519)
...-. -....++++.|..|...|++-.|.++|.++...+. .+|.. |..|+.|+.
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh-----~nPrl-----WLRlAEcCi 380 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH-----RNPRL-----WLRLAECCI 380 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh-----cCcHH-----HHHHHHHHH
Confidence 21101 12346788999999999999999999999999884 23433 667777764
No 199
>PRK11906 transcriptional regulator; Provisional
Probab=98.27 E-value=6.1e-05 Score=69.59 Aligned_cols=163 Identities=11% Similarity=0.048 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhc---C------ChHHHHHHHHH
Q 010063 120 ELFNEVKSMIMMG---NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---G------DLKFVQSLLDM 187 (519)
Q Consensus 120 ~l~~~~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g------~~~~A~~~~~~ 187 (519)
.++..|...+..+ ..+.|+.+|.+++.. .+.+|..+.++..++.+++.. | +..+|....++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNK-------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 3455555554444 356778888888832 233888899999999988654 2 22344445555
Q ss_pred HHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 010063 188 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267 (519)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 267 (519)
+.++. +.-+.++..+|.+....|+++.|...|++|+.+ +|..+.+++..|.+....|+.++|.+.
T Consensus 330 Aveld-------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 330 VSDIT-------TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHhcC-------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55443 333456889999999999999999999999986 466688999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChh-hHHHHHHHHH-HHHhCCCHHHHHHHHHHH
Q 010063 268 YHRVITILELNRGTESAD-LVLPLFSLGS-LFIKEGKAVDAESVFSRI 313 (519)
Q Consensus 268 ~~~al~~~~~~~~~~~~~-~~~~~~~la~-~~~~~g~~~~A~~~~~~a 313 (519)
.++++++ +|. .......+-. .|+ ....++|+.+|-+-
T Consensus 395 i~~alrL--------sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 395 IDKSLQL--------EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHhcc--------CchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 9999987 333 2333334433 444 45678888877553
No 200
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.26 E-value=0.00021 Score=60.52 Aligned_cols=242 Identities=14% Similarity=0.116 Sum_probs=161.8
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc-CCCchHHHHHHHH
Q 010063 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL-KDDEPLLDAILLH 208 (519)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 208 (519)
...+.++|+.-|++++++ .+.....-..++..+..+++.+|+|++-...|.+.+...+.. ..+... .+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlel------EgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~ 110 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLEL------EGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINS 110 (440)
T ss_pred cccCHHHHHHHHHHHHhc------ccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHH
Confidence 345789999999999987 133445556688889999999999999999998877655431 111111 11233
Q ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC----h
Q 010063 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES----A 284 (519)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~ 284 (519)
+-..-....+.+--..+|+..++..+.. .+......+-..+|.+|+..|+|.+-.+.+++.-.-++.-.|.++ .
T Consensus 111 IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt 188 (440)
T KOG1464|consen 111 ILDYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT 188 (440)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc
Confidence 3333334455555666777766665543 223333445567899999999999998888887777665544433 2
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA-MCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
....+|..-..+|..+.+-.+-..+|++++.+-... .||....+ ...=|..+.+.|+|++|-.-|-+|.+-+.+.
T Consensus 189 QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs- 264 (440)
T KOG1464|consen 189 QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES- 264 (440)
T ss_pred hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc-
Confidence 344556666778888888888888999999875444 35543322 3334667888999999998888888877663
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcC
Q 010063 364 YMSLDDSIMENMRIDLAELLHIVG 387 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g 387 (519)
+.......--|.-||..+.+.|
T Consensus 265 --GspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 265 --GSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred --CCcchhHHHHHHHHHHHHHHcC
Confidence 3333333444566778777765
No 201
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.23 E-value=0.0061 Score=59.13 Aligned_cols=173 Identities=18% Similarity=0.103 Sum_probs=118.7
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhhccCCCCchH
Q 010063 299 KEGKAVDAESVFSRILKIYTKVYGENDGR---VGMAMCSLAHAKC----ANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (519)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (519)
-.|+-+.++..+.++.+. ... ..|- ....|+.....+. .....+.|.+.++...+.+ |+.
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-------P~s-- 266 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-------PNS-- 266 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-------CCc--
Confidence 468999999999887651 111 1111 1112222222222 2345667777777776653 333
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCC
Q 010063 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 451 (519)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (519)
.-.+...|+++...|+.++|++.+++++....+. ..-...++..+|.++..+++|++|..++.+..+.
T Consensus 267 -~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------- 334 (468)
T PF10300_consen 267 -ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------- 334 (468)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------
Confidence 3345788999999999999999999988533222 1223457889999999999999999999988872
Q ss_pred CCcchhHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHHHHhcCCCCC
Q 010063 452 DDQSISFPMLHLGITLYHLNRD-------KEAEKLVLEALYIREIAFGKDSL 496 (519)
Q Consensus 452 ~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~ 496 (519)
+....+...+..|.++...|+. ++|.++++++-.+..++.|...|
T Consensus 335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 3334444556778899999999 89999999999888887774444
No 202
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=4.6e-05 Score=70.71 Aligned_cols=119 Identities=19% Similarity=0.128 Sum_probs=97.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhH
Q 010063 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 414 (519)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 414 (519)
|-.++...++++.|+.++++..+. . +. +...++.++...++-.+|+..+.+++. ..|..
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~-------~---pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d 233 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER-------D---PE---VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQD 233 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc-------C---Cc---HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCC
Confidence 344555678999999999886553 1 22 224589999999999999999999985 34444
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 010063 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482 (519)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (519)
...+...+..+...++++.|+...+++..+ .|....+|..|+.+|...|+++.|+..+..
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 778888999999999999999999999984 577788999999999999999999977653
No 203
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=5.7e-05 Score=70.09 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=96.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (519)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (519)
+-.++...++++.|+.++++..+. .|. +...++.++...++..+|++.+.+++. ..|....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCHH
Confidence 345556678999999999887653 343 445589999999999999999999996 3455577
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (519)
.+...+..+...++++.|+.+.+++.... |+ -...|..|+.+|...|++++|+..++.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-------P~---~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELS-------PS---EFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------ch---hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 88889999999999999999999999882 22 255778999999999999999987764
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=98.22 E-value=1.2e-05 Score=63.38 Aligned_cols=101 Identities=8% Similarity=0.009 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhh
Q 010063 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (519)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (519)
....+..++..+..++..|++++|..+|+-..-. ++...+-+..||.++..+++|++|+..|..+..+..
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~ 102 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK 102 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3456777999999999999999999999987665 666677889999999999999999999998877652
Q ss_pred hcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Q 010063 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN 231 (519)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 231 (519)
++|. ..+..|.+|...|+...|+..|+.++.
T Consensus 103 ----~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 103 ----NDYR---PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ----CCCC---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2222 267899999999999999999998877
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.22 E-value=4.8e-05 Score=58.60 Aligned_cols=105 Identities=17% Similarity=0.095 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 010063 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408 (519)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 408 (519)
...+..-|.-.+..|+|++|++.++..... -|..+....+...++.+|...|++++|+..+++-+++ .
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----h 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----H 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C
Confidence 446778899999999999999999987765 3445555677889999999999999999999998886 4
Q ss_pred CCChhHHHHHHHHHHHHHhccC---------------HHHHHHHHHHHHHHH
Q 010063 409 KEHPSFVTHLLNLAASYSRSKN---------------FVEAERLLRICLDIM 445 (519)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~ 445 (519)
+.||.+..+++..|.++..+.. ..+|...|++.+..+
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 6788888999999999988776 677777777777643
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.21 E-value=0.00033 Score=55.85 Aligned_cols=136 Identities=19% Similarity=0.195 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
..-.+.+|....+.|++.+|..+|++++.-. .......+..+++.....+++..|...+++..+...
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p------ 155 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP------ 155 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC------
Confidence 4456788999999999999999999998631 233456778899999999999999999998877421
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (519)
..........+|..+...|++.+|+..|+.++..+ +++. .....+..+.++|+.++|..-+....+...
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-------pg~~----ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-------PGPQ----ARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-------CCHH----HHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 11233345668999999999999999999999873 2222 235578899999999998887776655443
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.9e-05 Score=65.41 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHH
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIY 317 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 317 (519)
+|..+..+..||.+|...|++..|...|.+++++ .++....+..+|.+++.+. .-.++...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 4556788999999999999999999999999998 4555677778888776543 457889999999984
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 010063 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 375 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 375 (519)
+|....+...||..++..|+|.+|...++..++.. .++.+....+
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l------p~~~~rr~~i 267 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL------PADDPRRSLI 267 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------CCCCchHHHH
Confidence 56777799999999999999999999999999873 4555554433
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00011 Score=63.88 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=86.0
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccc---cHHHHHHHHHHHHHHHH
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE---NYEKSMLVYQRVINVLE 234 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~ 234 (519)
+|.+++-|..||.+|+..|+++.|...|.++.++. +++|.. +..+|.++..+. ...++...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~---~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEI---LLGLAEALYYQAGQQMTAKARALLRQALAL-- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHH---HHHHHHHHHHhcCCcccHHHHHHHHHHHhc--
Confidence 78888999999999999999999999999999886 444544 566777665543 456888999998875
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063 235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (519)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (519)
+|....+.+.+|..++..|+|.+|...++..++..
T Consensus 223 ------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 223 ------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred ------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 35557889999999999999999999999998863
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=98.19 E-value=4.1e-05 Score=60.39 Aligned_cols=100 Identities=16% Similarity=0.088 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc
Q 010063 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449 (519)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (519)
+......+..|.-+..+|++++|..+|+-.... ++.....+..||.++..+++|++|+..|..+..+.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~---- 101 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL---- 101 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----
Confidence 333455578899999999999999999865442 23334567899999999999999999999888753
Q ss_pred CCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
.++| ...+..|.+|..+|+.++|+..|+.+++
T Consensus 102 -~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 -KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2333 3357889999999999999999999987
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00071 Score=57.16 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH
Q 010063 163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI 242 (519)
Q Consensus 163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 242 (519)
.+.+.+..++.-.|+|.-....+.+.++.. ++.+|. ....+|.+-++-|+.+.|..++++..+......+. .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~---~e~~p~---L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~--q 249 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYY---PEQEPQ---LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL--Q 249 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhC---CcccHH---HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc--c
Confidence 467788889999999999999999887733 233343 46689999999999999999999887665554222 2
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
....+..+.+.+|.-.+++.+|...+.+.+.. ++..+.+.++.|.+....|+..+|++..+.++.+.
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33556778899999999999999999888765 55667888999999999999999999999988763
No 211
>PRK11906 transcriptional regulator; Provisional
Probab=98.15 E-value=0.00013 Score=67.57 Aligned_cols=162 Identities=17% Similarity=0.063 Sum_probs=116.4
Q ss_pred HHHHHHHHHccc---cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHH
Q 010063 206 LLHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVIT 273 (519)
Q Consensus 206 ~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~ 273 (519)
++..|......+ ....|+.+|.+++... +-+|..+.++..++.++... .+..+|....++|++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 355555554443 4567788888887431 23577788888888887654 234566777777777
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010063 274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK 353 (519)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (519)
+ ++..+.++..+|.+....++++.|...|++|+.+ +|+.+.+++..|.+....|+.++|.+.++
T Consensus 333 l--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 333 I--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred c--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6 5666889999999999999999999999999985 68888999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHH-HHHHcCChHHHHHHHHH
Q 010063 354 KALRVIKDSNYMSLDDSIMENMRIDLAE-LLHIVGRGQEGRELLEE 398 (519)
Q Consensus 354 ~al~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 398 (519)
+++++ +|.. .......+-. .|. ....++|+.+|-+
T Consensus 397 ~alrL-------sP~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQL-------EPRR--RKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HHhcc-------Cchh--hHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 99987 2222 1212222222 333 3456777776644
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=0.0023 Score=51.25 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
|.... .+.||......|++.+|...|++++.-. +..+ ...+..++......+++..|...+++..+.-.
T Consensus 87 pTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~---fA~d----~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p--- 155 (251)
T COG4700 87 PTVQN-RYRLANALAELGRYHEAVPHYQQALSGI---FAHD----AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP--- 155 (251)
T ss_pred hhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccc---cCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC---
Confidence 44444 6789999999999999999999987631 1222 45677899999999999999999998877521
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
..........+|..+...|++.+|+..|+.++..+ |.. ......+..+.++|+.++|..-+....+..
T Consensus 156 ---a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 156 ---AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PGP-QARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred ---ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 11233455678999999999999999999999864 221 233446788889999999998887777665
Q ss_pred Hh
Q 010063 360 KD 361 (519)
Q Consensus 360 ~~ 361 (519)
.+
T Consensus 224 ~r 225 (251)
T COG4700 224 KR 225 (251)
T ss_pred Hh
Confidence 54
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.10 E-value=2.2e-05 Score=72.30 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=64.3
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
..|.....++++|..|...|++++|+..|++++++ .|++.....+++++|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35778889999999999999999999999999998 4555544457899999999999999999999999986
No 214
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.10 E-value=7.4e-06 Score=49.51 Aligned_cols=41 Identities=34% Similarity=0.520 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010063 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (519)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (519)
+.++.++|.+|..+|++++|..++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46889999999999999999999999999999999999985
No 215
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.10 E-value=0.0034 Score=55.34 Aligned_cols=207 Identities=29% Similarity=0.352 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
.......+..+...+++..+...+...... ...+.....+...+..+...+++..+...+.+++....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 126 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP------ 126 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------
Confidence 456667888999999999999999988764 12455677888899999999999999999998887421
Q ss_pred ChhHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (519)
Q Consensus 325 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (519)
.+ .......+. ++...|++++|...+.+++.. .+............+..+...+++++|+..+.+++...
T Consensus 127 ~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 127 DP--DLAEALLALGALYELGDYEEALELYEKALEL-------DPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 11 122333344 899999999999999999552 11111223444566666888999999999999998864
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (519)
Q Consensus 404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (519)
... ....+..++..+...+++++|...+..++... +........++..+...|.++++...+.++
T Consensus 198 ~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 198 PDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred ccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 221 45678889999999999999999999998843 223445667777777778899999999999
Q ss_pred HHHH
Q 010063 484 LYIR 487 (519)
Q Consensus 484 ~~~~ 487 (519)
+...
T Consensus 263 ~~~~ 266 (291)
T COG0457 263 LELD 266 (291)
T ss_pred HHhC
Confidence 8765
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.09 E-value=1.9e-05 Score=72.77 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=63.3
Q ss_pred CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
..|.....++++|.+|...|++++|+..|++++++ .|+++....+++++|.+|..+|++++|+.++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46778899999999999999999999999999995 3444433356999999999999999999999999997
No 217
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.07 E-value=1.6e-05 Score=54.18 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=49.2
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh
Q 010063 128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (519)
Q Consensus 128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (519)
++..|++++|+..++++++. .|....++..+|.+|...|++++|...++++....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR----------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH----------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 36789999999999999998 88889999999999999999999999999887664
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.03 E-value=0.016 Score=56.35 Aligned_cols=178 Identities=18% Similarity=0.090 Sum_probs=123.0
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH---HHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLV---LPLFSLGSLFI----KEGKAVDAESVFSRILKIYTKVYGENDG 326 (519)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (519)
+..-.|+-+.++..+.++.+. ..+ ..|... ..|+.....+. .....+.|.+.+....+. .|
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP 264 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YP 264 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CC
Confidence 333468999999999887652 111 112111 11222222222 234556677776666653 46
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (519)
.....+...|.++...|+.++|++.+++++....+. .....-++..++.++..+++|++|..++.+..+.
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~------~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~---- 334 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW------KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE---- 334 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH------HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc----
Confidence 666778889999999999999999999988543321 2233456789999999999999999999987763
Q ss_pred hCCCChhHHHHHHHHHHHHHhccCH-------HHHHHHHHHHHHHHHHhcCCCCcch
Q 010063 407 KGKEHPSFVTHLLNLAASYSRSKNF-------VEAERLLRICLDIMTKTVGPDDQSI 456 (519)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~ 456 (519)
+....+...+..|.++...|+. ++|.+++.++-....+..|...|..
T Consensus 335 ---s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E 388 (468)
T PF10300_consen 335 ---SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLE 388 (468)
T ss_pred ---cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChH
Confidence 3344556667789999999999 8999999999888887666555533
No 219
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=8.3e-05 Score=59.84 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (519)
.....+-..+..++..|+|++|..-|..||+++.... ......+|.+.|.+.+.++.++.|+.-..+++++.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--- 164 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-----TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--- 164 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-----HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---
Confidence 3445577788899999999999999999999965433 45667788899999999999999999999999876
Q ss_pred CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
|....++...+.+|.....|++|+.-|.+.++.
T Consensus 165 ----pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 165 ----PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred ----chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 666777888899999999999999999998875
No 220
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.98 E-value=3.4e-05 Score=52.55 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=47.2
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
...|++++|+..|++++.. .|....++..+|.+|...|++++|...+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5689999999999999987 5777889999999999999999999999998874
No 221
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.0088 Score=51.41 Aligned_cols=230 Identities=10% Similarity=0.108 Sum_probs=154.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (519)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (519)
++.+....+..++++|+..|.+.+..-... ......+.-.+...++..|...|++..-.+......+....+ ..|.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~--dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f--tk~k 82 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSK--DEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF--TKPK 82 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCCh--hhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh--cchh
Confidence 456777788999999999999887641000 001123345577899999999999988776665554444332 2244
Q ss_pred HHHHHHHHHHHH-HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 202 LDAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 202 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
...+...+-.-+ .....++.-+......++...+.. ..-.....-..+...++..|.|.+|+......+.-.++..
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D- 159 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD- 159 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc-
Confidence 444444444433 334567777777777777654421 1112223345678899999999999999999988887764
Q ss_pred CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV-GMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
+.+....++..-..+|....+..++...+..|.......+- +|.. +..-..-|...+...+|.-|-.+|-++++-+
T Consensus 160 -DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC--Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 160 -DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC--PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred -CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC--CHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 45666777777788899999999988888877776655542 2332 2222223566777889999999999999876
Q ss_pred Hh
Q 010063 360 KD 361 (519)
Q Consensus 360 ~~ 361 (519)
..
T Consensus 237 t~ 238 (421)
T COG5159 237 TL 238 (421)
T ss_pred cc
Confidence 53
No 222
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00018 Score=57.95 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=87.0
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (519)
+-.-|+-++..|+|.+|..-|..|+.++... ........+.+.|.+...++.++.|+.-..+++++ .|.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pt 166 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPT 166 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cch
Confidence 5556888899999999999999999997553 22355677889999999999999999999999998 566
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
...++...+.+|..+.+|++|+.-|.+.++.
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 7788888899999999999999999999885
No 223
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.89 E-value=0.0033 Score=46.07 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=87.6
Q ss_pred HHHHHHHHH--HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 287 VLPLFSLGS--LFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 287 ~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
+.+|..|+. -...-|-|++|...+++++++.+.+.....- -.+.++..|+..+..+|+|++++...++++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 445555543 3455689999999999999998766332211 1556788899999999999999999999999998
Q ss_pred hhccCCCCch-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 010063 361 DSNYMSLDDS-IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408 (519)
Q Consensus 361 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 408 (519)
+...+..+.. .+..+.++.+..+...|+.++|+..|+.+-++..+..|
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 8755555532 33445578899999999999999999999888766544
No 224
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.016 Score=51.11 Aligned_cols=300 Identities=11% Similarity=0.097 Sum_probs=188.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI----EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
+..+.......++++++..+...+..... ...++ ..-.+...+|..|...|+.++-..............+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~----~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~- 82 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQG----ASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS- 82 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhcc----ccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh-
Confidence 45566666777788888888887764211 11122 2234678899999999999988887777666554322
Q ss_pred CchHHHHHHHHHHHHHHc-cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYST-LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (519)
.+..+.....+-..+.. .+..+.-+.+...+++...+.. ..-..-..-..+...|...++|.+|+......+.-.+
T Consensus 83 -KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElK 159 (411)
T KOG1463|consen 83 -KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELK 159 (411)
T ss_pred -hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 23334444444444333 3455666777777777654420 1111223345678899999999999999999998888
Q ss_pred HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010063 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-MAMCSLAHAKCANGNAEEAVELYKKA 355 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 355 (519)
+.. +.+....++..-..+|....+..+|...+..|-......+ -+|... ..-..-|.++....+|.-|..||-+|
T Consensus 160 KlD--DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY--cpPqlQa~lDLqSGIlha~ekDykTafSYFyEA 235 (411)
T KOG1463|consen 160 KLD--DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY--CPPQLQATLDLQSGILHAAEKDYKTAFSYFYEA 235 (411)
T ss_pred hcc--cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc--cCHHHHHHHHHhccceeecccccchHHHHHHHH
Confidence 765 4455566666677888899999999988888776655544 234322 22233366677778999999999999
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--ccCHHH
Q 010063 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVE 433 (519)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~ 433 (519)
.+-+... .++.....++-.+-.+-...+..++--.++.-=..+. . .. ....++..++..+.. +.+|+.
T Consensus 236 fEgf~s~----~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y---~g-~~i~AmkavAeA~~nRSLkdF~~ 305 (411)
T KOG1463|consen 236 FEGFDSL----DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y---AG-RDIDAMKAVAEAFGNRSLKDFEK 305 (411)
T ss_pred Hcccccc----CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c---cC-cchHHHHHHHHHhcCCcHHHHHH
Confidence 9887642 3334444455555555566677666555443222211 1 11 223566667777654 356777
Q ss_pred HHHHHHHHHH
Q 010063 434 AERLLRICLD 443 (519)
Q Consensus 434 A~~~~~~al~ 443 (519)
|+.-|+.-+.
T Consensus 306 AL~~yk~eL~ 315 (411)
T KOG1463|consen 306 ALADYKKELA 315 (411)
T ss_pred HHHHhHHHHh
Confidence 7766665443
No 225
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.87 E-value=0.00014 Score=50.23 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=52.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
|..+|...+++++|+..+++++.+ +|.....+...|.++...|++++|...++++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356889999999999999999986 5667778999999999999999999999999987
No 226
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.86 E-value=0.026 Score=53.19 Aligned_cols=265 Identities=15% Similarity=0.120 Sum_probs=144.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHH-HHHH
Q 010063 169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTS 247 (519)
Q Consensus 169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~ 247 (519)
+.+...+|+|+.-....... ..+.+ .....-+......|+++++..+.+++.............. ....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~-------~~~~~---~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~ 74 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQS-------NEDSP---EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRA 74 (352)
T ss_pred HHHHHhcCChhhHHHHHhhc-------cCCCh---hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45667889998844443332 12222 1223333344488999999999998887654432221111 1111
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhcC--CC
Q 010063 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIYTKVYG--EN 324 (519)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~--~~ 324 (519)
+..+. .+....+.+++..+...... .+ .....+-.... +...........+..+.+....+. ..
T Consensus 75 y~~l~-~lq~L~Elee~~~~~~~~~~---------~~---~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~ 141 (352)
T PF02259_consen 75 YPSLV-KLQQLVELEEIIELKSNLSQ---------NP---QDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILL 141 (352)
T ss_pred HHHHH-HHhHHHHHHHHHHHHHhhcc---------cH---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccc
Confidence 11111 11222333333333211100 00 00011111110 111112223333334433333321 12
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL-IT 403 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~ 403 (519)
....+..+..++.+..+.|+++-|...+.++....... ... ...+....+.++...|+..+|+..++..+. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~---~~~---~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS---ESL---LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc---cCC---CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34567789999999999999999999999877653211 111 223446679999999999999999988887 22
Q ss_pred HHh-------------------------hCCCChhHHHHHHHHHHHHHhc------cCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 404 EKY-------------------------KGKEHPSFVTHLLNLAASYSRS------KNFVEAERLLRICLDIMTKTVGPD 452 (519)
Q Consensus 404 ~~~-------------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~ 452 (519)
... ........+.++..+|...... +..+++...|+++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~-------- 287 (352)
T PF02259_consen 216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL-------- 287 (352)
T ss_pred hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------
Confidence 221 0111234456777777777777 7888899999998875
Q ss_pred CcchhHHHHHHHHHHHhc
Q 010063 453 DQSISFPMLHLGITLYHL 470 (519)
Q Consensus 453 ~~~~~~~~~~la~~~~~~ 470 (519)
+|....++..+|..+...
T Consensus 288 ~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 288 DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 344555677777766543
No 227
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.017 Score=51.02 Aligned_cols=260 Identities=12% Similarity=0.066 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhhhhhcCC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
+.+++.+..+...|++.+-..+.+..-..+.... .+..+.....+-.... ..+..+.-+.++..++++...- .
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~-----KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e-k 122 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVS-----KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE-K 122 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH-h
Confidence 4478888999999999988888777665544432 3444444444444433 3445566777778877776541 1
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (519)
........-..+...|...++|.+|+......+...++. .|.+.+..++..-..+|+...+..+|...+..|......
T Consensus 123 RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana 200 (411)
T KOG1463|consen 123 RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA 200 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc
Confidence 112223334578899999999999999999998888776 344556667777788999999999999998888776655
Q ss_pred hcCCCChhhH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063 278 NRGTESADLV-LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (519)
Q Consensus 278 ~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (519)
.+- +|... ..-..-|.++....+|..|..||-+|.+-+.... +++....++-.+-.+-...+..++--..+..=.
T Consensus 201 iYc--pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~--~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~ 276 (411)
T KOG1463|consen 201 IYC--PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD--DDVKALTSLKYMLLCKIMLNLPDDVAALLSAKL 276 (411)
T ss_pred ccc--CHHHHHHHHHhccceeecccccchHHHHHHHHHccccccC--CcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHH
Confidence 542 33322 2223346667777899999999999999776542 233444444444444445566666544443222
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHHHH--cCChHHHHHHHHH
Q 010063 357 RVIKDSNYMSLDDSIMENMRIDLAELLHI--VGRGQEGRELLEE 398 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~ 398 (519)
.+. +.+++ ..+...++..+.+ ..+|+.|+.-|..
T Consensus 277 ~l~----y~g~~----i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 277 ALK----YAGRD----IDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred HHh----ccCcc----hHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 221 11222 2333556666543 2345555554443
No 228
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.84 E-value=0.00016 Score=50.05 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=52.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
..+|...+++++|++++++++.+ +|.....+...|.++...|++++|...++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56889999999999999999997 5667889999999999999999999999999986
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.81 E-value=0.02 Score=50.25 Aligned_cols=229 Identities=22% Similarity=0.290 Sum_probs=159.7
Q ss_pred cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (519)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (519)
.+.+..+...+......... ..........+..+...+++..+...+...... ...+.....+...+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 104 (291)
T COG0457 36 LGELAEALELLEEALELLPN-----SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLL 104 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc-----ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHH
Confidence 34455555555554433211 012334677888888999999999988887764 1234446677788888
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010063 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS-LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC 333 (519)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 333 (519)
+...+++.++...+.+++... +.........+. ++...|++++|...+.+++... +..........
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~ 171 (291)
T COG0457 105 LEALGKYEEALELLEKALALD--------PDPDLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALL 171 (291)
T ss_pred HHHHhhHHHHHHHHHHHHcCC--------CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHH
Confidence 999999999999988887652 111222333344 8899999999999999995521 10123445566
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010063 334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 413 (519)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (519)
..+..+...+++++|+..+.+++..... . ....+..++..+...+++++|...+..++.... .
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~ 234 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPD-------D--DAEALLNLGLLYLKLGKYEEALEYYEKALELDP--------D 234 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCcc-------c--chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--------c
Confidence 6666688899999999999999887432 0 234567889999999999999999999887532 2
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
.......++..+...+.++++...+.+++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 235 NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3345566677777777899999999988874
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.025 Score=49.91 Aligned_cols=165 Identities=11% Similarity=-0.057 Sum_probs=123.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010063 169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL 248 (519)
Q Consensus 169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 248 (519)
+.+....|++.+|-...++.++-. |.-..++..--..++..|+.......+++.+... .++.|-...+.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~-------PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~ 178 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDY-------PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVH 178 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhC-------chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHH
Confidence 444567788888887787776543 4444445556667888899988888888876543 34566667777
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010063 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (519)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (519)
..++..+...|-|++|++..++++++ ++....+...++.++...|++.++.++..+.-...+.. ....
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mla 246 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLA 246 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHH
Confidence 78899999999999999999999987 45567788889999999999999999988776544321 2223
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063 329 GMAMCSLAHAKCANGNAEEAVELYKKAL 356 (519)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (519)
...|-..|..+...+.|+.|++.|+.-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 3445567888888899999999998744
No 231
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.75 E-value=0.0081 Score=44.10 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=85.0
Q ss_pred HHHHHHHHHH--HhhcCCHHHHHHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063 245 VTSLLGMAKV--LGSIGRAKKAVEIYHRVITILELNRGTESA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (519)
Q Consensus 245 ~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (519)
+.+|..|+.. ...-|-|++|...+++++++.+.+...... ..+.++..|+..+..+|+|++++....+++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 4445444443 455689999999999999998776543221 2356788899999999999999999999999887
Q ss_pred HhcCCCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 319 KVYGENDGR----VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 319 ~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
+.. +-+.+ ...+..+.+..+...|+.++|+..|+.+-++..+.
T Consensus 87 RRG-EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 87 RRG-ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred hcc-ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 653 22322 44456778889999999999999999999887764
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.026 Score=49.81 Aligned_cols=170 Identities=11% Similarity=0.021 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (519)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (519)
.+...+..++..|++.+|....++.++- .|....++...-.+++..|+...-...+++.+.. ..++.
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d----------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dl 171 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDD----------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADL 171 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHh----------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCC
Confidence 3555666778889999988888888776 6666667777777888899988888888776543 25666
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
|-...+.-.++..+...|-|++|.+...+++++. +.-..+...++.++...|++.++.+...+.-...+.
T Consensus 172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~-- 241 (491)
T KOG2610|consen 172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ-- 241 (491)
T ss_pred cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--
Confidence 7777777788889999999999999999999873 223667778899999999999999998876554432
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 314 (519)
..-....-|...+..+.+.+.|+.|+..|.+-+
T Consensus 242 --s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 242 --SWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred --hhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 112223345567888888999999999998644
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.75 E-value=0.027 Score=51.77 Aligned_cols=204 Identities=16% Similarity=0.207 Sum_probs=122.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHH
Q 010063 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMY 213 (519)
Q Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (519)
+..+.+...+.+...+..++ ......+.+...+-..|....+|+.-+++.+....+-.- +.+....+....|.++
T Consensus 115 ~~g~~~~l~~~L~~i~~rLd--~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~---~~~~~~~i~~~yafAL 189 (374)
T PF13281_consen 115 YSGARKELAKELRRIRQRLD--DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTC---DVANQHNIKFQYAFAL 189 (374)
T ss_pred HhhHHHHHHHHHHHHHHhhC--CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCcc---chhcchHHHHHHHHHH
Confidence 34445555666666665542 222334556667777899999999999988887665211 1122333456677777
Q ss_pred Hc---cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHHHHHHhcCC
Q 010063 214 ST---LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVITILELNRGT 281 (519)
Q Consensus 214 ~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~ 281 (519)
.+ .|+.++|+..+..++... ......++..+|.+|-.. ...++|+..|.++.++
T Consensus 190 nRrn~~gdre~Al~il~~~l~~~-------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~------- 255 (374)
T PF13281_consen 190 NRRNKPGDREKALQILLPVLESD-------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI------- 255 (374)
T ss_pred hhcccCCCHHHHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC-------
Confidence 77 899999999998875432 122244566667776432 2456677777776665
Q ss_pred CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG----ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
+ ++ ...-.|++.++...|...+...-.++.........+ ......-+.+..++.+..-.|++++|.+.++++.+
T Consensus 256 ~-~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 256 E-PD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred C-cc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 2 22 233346666677677644444333333311111111 11223344556677888889999999999999987
Q ss_pred H
Q 010063 358 V 358 (519)
Q Consensus 358 ~ 358 (519)
.
T Consensus 334 l 334 (374)
T PF13281_consen 334 L 334 (374)
T ss_pred c
Confidence 6
No 234
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.74 E-value=0.014 Score=54.60 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=93.4
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh---------
Q 010063 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG--------- 326 (519)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------- 326 (519)
.+..+...-++..++|+++ +|+.+.+|..|+.- ......+|+.+++++++..+..++.+..
T Consensus 179 WRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE 248 (539)
T ss_pred HhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence 4456677777888888887 46667777766642 2344789999999999887766544310
Q ss_pred --------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063 327 --------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (519)
Q Consensus 327 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (519)
....+...+|.+..+.|+.+||++.+++.++.. + ......++.+|..++...+.|.++..++.+
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-------p-~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-------P-NLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-------C-ccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 123455678999999999999999999988752 1 222345779999999999999999988877
Q ss_pred H
Q 010063 399 C 399 (519)
Q Consensus 399 a 399 (519)
-
T Consensus 321 Y 321 (539)
T PF04184_consen 321 Y 321 (539)
T ss_pred h
Confidence 3
No 235
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.68 E-value=0.00046 Score=60.54 Aligned_cols=97 Identities=12% Similarity=0.026 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (519)
.++-+.+..|+++|.|++|+++|.+++.. .|..+..+.+.+.+|+....|..|+.-.+.++.+.
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~----------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------ 161 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAV----------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD------ 161 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhcc----------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------
Confidence 33667889999999999999999999988 77778889999999999999999999999988775
Q ss_pred chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
.....+|...|..-...|+..+|.+-++.++++
T Consensus 162 -~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 162 -KLYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred -HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 455667888899999999999999999999886
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.67 E-value=0.023 Score=53.20 Aligned_cols=128 Identities=15% Similarity=0.048 Sum_probs=92.6
Q ss_pred HHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC--------
Q 010063 212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES-------- 283 (519)
Q Consensus 212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------- 283 (519)
-.++..+...-++...+|+++. |+.+.+|..||. .......+|+.+++++++..+...+.+.
T Consensus 177 ~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEIN--------PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHF 246 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence 3355667788888888888874 444555555543 1234578888999998888776554321
Q ss_pred ---------hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010063 284 ---------ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354 (519)
Q Consensus 284 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (519)
.....+...+|.+..+.|+.++|++.++..++.. ...+...+..+|...+...+.|.++..++.+
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1123455779999999999999999999998742 1223566889999999999999999988877
Q ss_pred H
Q 010063 355 A 355 (519)
Q Consensus 355 a 355 (519)
-
T Consensus 321 Y 321 (539)
T PF04184_consen 321 Y 321 (539)
T ss_pred h
Confidence 4
No 237
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.65 E-value=0.046 Score=53.19 Aligned_cols=129 Identities=9% Similarity=0.048 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhh-----hhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI-----VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
+..++..|..++......-+++-|+..|-+.... .++++.-+.. -...+.+-..-|++++|.+.|..+-.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~----~~q~aei~~~~g~feeaek~yld~dr- 762 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSK----EQQRAEISAFYGEFEEAEKLYLDADR- 762 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhH----HHHhHhHhhhhcchhHhhhhhhccch-
Confidence 3345677888888888887888888887665332 1111111110 12234444556888888888765422
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010063 233 LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR-GTESADLVLPLFSLGSLFIKEGKAVDAESVFS 311 (519)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 311 (519)
.+++ ...+...|+|-.-.++++ ... +.++...-.++.++|..+..+..|++|.++|.
T Consensus 763 ---------rDLA------ielr~klgDwfrV~qL~r-------~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 763 ---------RDLA------IELRKKLGDWFRVYQLIR-------NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred ---------hhhh------HHHHHhhhhHHHHHHHHH-------ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 123334454443333222 211 12333445566677777777777777777766
Q ss_pred HH
Q 010063 312 RI 313 (519)
Q Consensus 312 ~a 313 (519)
..
T Consensus 821 ~~ 822 (1189)
T KOG2041|consen 821 YC 822 (1189)
T ss_pred hc
Confidence 54
No 238
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.63 E-value=0.0011 Score=56.34 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=80.0
Q ss_pred cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHHH
Q 010063 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-----SILLVTSLL 249 (519)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~ 249 (519)
...+++|+..|..++-.....+.++...+.++..+|++|...|+.+....++++|++.+.+.+... .......++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 445667777777776666655666677888899999999999999888889999988877664332 224567888
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063 250 GMAKVLGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~ 274 (519)
.+|.++...|++++|..++.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999864
No 239
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.01 Score=50.98 Aligned_cols=227 Identities=14% Similarity=0.125 Sum_probs=148.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (519)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (519)
.+|.-....+++++|+..|.+.+.---..........-.+..+++.+|...|++..-.+......+..... ..|...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f---tk~k~~ 84 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF---TKPKIT 84 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh---cchhHH
Confidence 45666677889999999998887541000000112234567789999999999887766666555554443 234444
Q ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC
Q 010063 330 MAMCSLAHAK-CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408 (519)
Q Consensus 330 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 408 (519)
.....+...+ .....++.-+..+...++...+. .........-..++.++.+.|+|.+|+......+.-.++.
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE----kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~-- 158 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE----KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY-- 158 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--
Confidence 3333333322 33456777888888888776542 1112222334567889999999999999999888877776
Q ss_pred CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHH--HHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML--HLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
++.+.....+..-..+|....+..++...+..|-......+- |....+.. .-|..++.-.+|..|..||-++++-
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC---Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC---PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC---CHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 355666667777788899999999988888877766554432 33222222 2255566778899999999999886
Q ss_pred HH
Q 010063 487 RE 488 (519)
Q Consensus 487 ~~ 488 (519)
+.
T Consensus 236 ft 237 (421)
T COG5159 236 FT 237 (421)
T ss_pred cc
Confidence 53
No 240
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.61 E-value=0.003 Score=53.76 Aligned_cols=100 Identities=24% Similarity=0.222 Sum_probs=81.5
Q ss_pred HCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC-----ChhHH
Q 010063 341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-----HPSFV 415 (519)
Q Consensus 341 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~ 415 (519)
....+++|++.|.-|+-...-. +.++...+.++..+|.+|...|+.+....++++|+..+.+.+... ..+..
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~---~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIK---KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 3457889999998888776543 556667888999999999999998888888888888887665332 22446
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
..++.+|.+..+.|++++|..+|.+++.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 7888999999999999999999999987
No 241
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.60 E-value=0.0033 Score=50.46 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCC------------hHHHHHHHHHHHHHHhcCChHHHHHHH
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG------------IEEVAILDIIALGYVYIGDLKFVQSLL 185 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 185 (519)
+..+...+......|+...++..+++++.+++.-+-.+... .....++..++..+...|++++|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 44456667777788899999999999988766443212111 112345567788888999999999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063 186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (519)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (519)
++++... |..-.++..+..+|...|+..+|+..|++......+.+|..
T Consensus 86 ~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 86 QRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 9998875 55556688999999999999999999999988887655544
No 242
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.0097 Score=48.33 Aligned_cols=98 Identities=17% Similarity=0.093 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (519)
+...++..+...|++++|+..++.++.. ..|......+-..||.+...+|++++|...+.... +
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~-------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~ 154 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ-------TKDENLKALAALRLARVQLQQKKADAALKTLDTIK---------E 154 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc-------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------c
Confidence 4556788899999999999999998865 33444555566889999999999999998887532 2
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
+..........|+++...|+-++|...|++++..
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3334445566799999999999999999999984
No 243
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.58 E-value=0.061 Score=53.65 Aligned_cols=281 Identities=13% Similarity=0.101 Sum_probs=172.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-----IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (519)
Q Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (519)
...|..+++.+-+. ....+...+|.+|.. ..|.+.|+.+++.+......... .....+.+.
T Consensus 228 ~~~a~~~~~~~a~~------------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~--~~~~~a~~~ 293 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL------------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT--KGLPPAQYG 293 (552)
T ss_pred hhHHHHHHHHHHhh------------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh--hcCCccccH
Confidence 45677777766543 345566677777754 46899999999987662110000 001224778
Q ss_pred HHHHHHccc-----cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHhcC
Q 010063 209 MGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 209 l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~ 280 (519)
+|.+|.... +...|..+|.++-.. +. ..+.+.+|.++..-. ++..|..+|..|...
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------ 357 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------ 357 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence 899988743 678899999888664 11 346677888887765 578999999988754
Q ss_pred CCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Q 010063 281 TESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKA 355 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 355 (519)
....+...++.+|.. .-+...|..++.++.+. +++. +...++..+.. .++++.+...+...
T Consensus 358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------GNPS---AAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------cChh---hHHHHHHHHHHccccccHHHHHHHHH
Confidence 235677888888764 34789999999999874 2222 23333333322 27777777666655
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc---
Q 010063 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS--- 428 (519)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--- 428 (519)
.+...+. .......+.......... .+...+...+.++.. .....+...+|.+|..-
T Consensus 424 a~~g~~~------~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~ 487 (552)
T KOG1550|consen 424 AELGYEV------AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGT 487 (552)
T ss_pred HHhhhhH------HhhHHHHHHHhccccccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCC
Confidence 5442221 111111111111111111 133445555544432 22345677888888654
Q ss_pred -cCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc-C--ChHHHHHHHHHHHH
Q 010063 429 -KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-N--RDKEAEKLVLEALY 485 (519)
Q Consensus 429 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~a~~ 485 (519)
.+++.|...|..+... . ....+++|.++..- | ....|..++.++.+
T Consensus 488 ~~d~~~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 488 GRDPEKAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred CCChHHHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 4689999999988762 1 67788999988752 1 26788888888765
No 244
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00067 Score=56.45 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
...+-..+..++....|+.|+..|.+++.+ .|..+..+.+.+.++++..+++.+..-..+++++.
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~----------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~----- 74 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI----------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD----- 74 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhc----------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-----
Confidence 344666778888889999999999999988 78888889999999999999999999999999886
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 236 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 236 (519)
|.....++.+|........|++|+..++++..+.+..
T Consensus 75 --~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 75 --PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred --hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 7788889999999999999999999999999887654
No 245
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.57 E-value=0.11 Score=52.24 Aligned_cols=235 Identities=14% Similarity=0.100 Sum_probs=137.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (519)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (519)
......+++.+|+....+.+.. +|....+...-|....++|+.++|..+++..... +.++ ...
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk----------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~----~~~D---~~t 79 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKK----------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL----KGTD---DLT 79 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC----CCCc---hHH
Confidence 3456788899999988888776 7777778888888999999999999777654332 2222 223
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (519)
+..+-.+|..+|++++|..+|++++... |. -..+..+-.+|.+.+.|.+-.+. ++++++... ..+.
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~p--k~~y 145 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNFP--KRAY 145 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCC--cccc
Confidence 6678889999999999999999998753 22 34445556677777777654333 333433221 2222
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHHHHhcCCC-Ch-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAES--VFSRILKIYTKVYGEN-DG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
..|..+..+.......++... ..--|-.++++..... .. ..+.... .-.++..+|++++|.+.+..-+.- .
T Consensus 146 --yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L-yl~iL~~~~k~~eal~~l~~~la~--~ 220 (932)
T KOG2053|consen 146 --YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL-YLLILELQGKYQEALEFLAITLAE--K 220 (932)
T ss_pred --hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHH--h
Confidence 233444444444444444433 1111111222221111 11 1222221 224566789999999988543322 1
Q ss_pred hccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
....+.. ..+.....+...+++.+-.++..+.+..
T Consensus 221 ---l~~~~~~---l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 221 ---LTSANLY---LENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred ---ccccchH---HHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 1122221 2234556677778887777766666553
No 246
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.57 E-value=0.00058 Score=59.93 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=83.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010063 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (519)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (519)
-..|.-|+.+|.|++|+++|.+++.. .|.....+.+.+..|.+..+|..|+.-+..|+.+- ...
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLY 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHH
Confidence 45688999999999999999999986 56667888899999999999999999999999863 345
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 329 GMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
..+|...+..-..+|...+|.+-++.++++
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 678888999999999999999999999987
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.52 E-value=0.0075 Score=48.40 Aligned_cols=110 Identities=13% Similarity=0.171 Sum_probs=79.5
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC--------------HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (519)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (519)
...|......|+...++..+++++.++...+-++. .....+...++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 33455555667788888888888877653322110 1334566778888999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
.. +|..-..+..+..+|...|+..+|+..|++......+-+|..
T Consensus 90 ~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 90 AL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred hc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 97 677788899999999999999999999999999888765544
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.45 E-value=0.094 Score=48.37 Aligned_cols=205 Identities=13% Similarity=0.141 Sum_probs=122.8
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 010063 218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297 (519)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 297 (519)
.+..+.....+.+...+..++........+..++-..|....+|+.-+++.+..-.+ ...+.+....+....|.++
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafAL 189 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFAL 189 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHH
Confidence 333344445555554444333222233445566777888888888887777665433 1112233455667788888
Q ss_pred Hh---CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHhhccC
Q 010063 298 IK---EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---------NGNAEEAVELYKKALRVIKDSNYM 365 (519)
Q Consensus 298 ~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~ 365 (519)
.+ .|+.++|+..+..++.. .......++..+|.+|-. ....++|+..|.++.++-
T Consensus 190 nRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~------ 256 (374)
T PF13281_consen 190 NRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE------ 256 (374)
T ss_pred hhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC------
Confidence 88 89999999999887553 233444567777887743 224567777777776652
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (519)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (519)
++. ..-.|++.++...|...+...-.++.........+ .........+..++.+..-.|++++|...++++
T Consensus 257 -~~~----Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 257 -PDY----YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred -ccc----cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 12267788888888755444333333311111111 112222344556777888899999999999999
Q ss_pred HHH
Q 010063 442 LDI 444 (519)
Q Consensus 442 l~~ 444 (519)
+..
T Consensus 332 ~~l 334 (374)
T PF13281_consen 332 FKL 334 (374)
T ss_pred hhc
Confidence 874
No 249
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.37 E-value=0.013 Score=48.28 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=85.5
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (519)
...+..++..+|..|.+.|+.++|.+.|.++.+.. ........+..++.++....|++.....+..++-....
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 45677789999999999999999999999987752 33455567778999999999999999999999988776
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
... +..........-|..+...++|.+|...|-.+...
T Consensus 105 ~~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 105 KGG--DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred ccc--hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 531 11122223334566777889999999998877653
No 250
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.034 Score=45.26 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
...-..+...++..+...|++++|+..++.++... .|......+-.+++.+...+|.+++|+..+....
T Consensus 85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~------- 153 (207)
T COG2976 85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT----KDENLKALAALRLARVQLQQKKADAALKTLDTIK------- 153 (207)
T ss_pred cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------
Confidence 33344456678889999999999999999877543 3333444556789999999999999998876532
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (519)
++..........|.++...|+-++|...|+++++.
T Consensus 154 --~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 154 --EESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred --cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 22334555667899999999999999999999986
No 251
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0011 Score=55.16 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=87.7
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (519)
+..-|..++.-.+|+.|+..|.+++.+ +|..+..+.+-+.+|++..+++.+..-.++++++ .|.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N 76 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN 76 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence 555677788888999999999999876 3555677889999999999999999999999998 677
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
.+...+.+|........|++|+..++++..+.+..
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999988765
No 252
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.11 Score=52.95 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
.+|..+|.+....|...+|++.|-++ ++ ...|.....+....|.|++-++++..+.+.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika----------dD---ps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DD---PSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc----------CC---cHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 35666777777777777777776655 22 234555566666777777777776666554
No 253
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.34 E-value=0.015 Score=48.07 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=88.1
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
......++..+|..|...|+.++|++.|.++.+.+. ........+.++..+....|++.....+..++-.....
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~- 105 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK- 105 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-
Confidence 455677889999999999999999999999887532 23456677888999999999999999999999988765
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
+.+..........-|..+...++|.+|-..|-.+...
T Consensus 106 ---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 106 ---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred ---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 3444444445556677788899999999998877543
No 254
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0066 Score=50.95 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC---CH-------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---SI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (519)
..++..-|+-++..|+|.+|...|+.|+...+.+.-.. .| .....+.+++.|+...|+|-+++++....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999998776653222 22 234467889999999999999999999988
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
.. +|....+|+..|......=+.++|..-+.+++++
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 75 6778899999999999999999999999999984
No 255
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.32 E-value=0.00066 Score=38.99 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010063 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (519)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 489 (519)
++.+||.+|..+|++++|+++|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999987754
No 256
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0065 Score=50.99 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC---ChhH-------HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE---HPSF-------VTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
.++..-|+-++..|+|.+|...|.+|+...+...-.. .|.. ...+.|.+.|+...|+|-++++...+.+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4556778889999999999999999998876653322 2222 23577889999999999999999998887
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.+|....+++.-|.++...=+..+|..-+.+++++.
T Consensus 259 --------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 259 --------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred --------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 468889999999999999999999999999999864
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.26 E-value=0.00089 Score=38.44 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
++.+||.+|...|++++|+++|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999977654
No 258
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.21 E-value=0.29 Score=49.48 Aligned_cols=191 Identities=15% Similarity=0.107 Sum_probs=109.4
Q ss_pred HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010063 214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL 293 (519)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 293 (519)
...+++.+|.....+.++. +|....+...-|.++.++|+.++|..+++..-.. .+..-.++..+
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--------~~~D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL--------KGTDDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC--------CCCchHHHHHH
Confidence 3567888888888877664 3444455556688899999999999665533221 22245677788
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 010063 294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 373 (519)
Q Consensus 294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 373 (519)
-.+|.++|++++|..+|++++.. .|. -..+..+=..|.+.+.|.+-.+. ++++++. .+..+-..
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~---~pk~~yyf- 147 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKN---FPKRAYYF- 147 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh---CCcccchH-
Confidence 99999999999999999999874 344 34455555667776666543332 3334333 12222222
Q ss_pred HHHHHHHHHHHHcCChHHHHH-----HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063 374 NMRIDLAELLHIVGRGQEGRE-----LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (519)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (519)
|.-+..+.......++... +.++..+..-+..| .-...++.. ..-.++..+|++++|.+.+..
T Consensus 148 --WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 148 --WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIESEAEII-LYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred --HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccchHHHHH-HHHHHHHhcccHHHHHHHHHH
Confidence 2334444444444444333 11221111111111 111122221 223456778999999988843
No 259
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.39 Score=49.30 Aligned_cols=187 Identities=15% Similarity=0.083 Sum_probs=108.5
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (519)
+|..+|....+.|...+|++.|-+| ++| ..+.....+....|.|++-+.++.-+.+..++.
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~------ 1166 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREP------ 1166 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc------
Confidence 4788888888888888888888765 223 245556677778888888888887765543221
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (519)
.+-..|...|.+.++..+-+++. .|+++ + -....|.-++..|.|+.|.-+|...-
T Consensus 1167 ---~id~eLi~AyAkt~rl~elE~fi----------~gpN~---A-~i~~vGdrcf~~~~y~aAkl~y~~vS-------- 1221 (1666)
T KOG0985|consen 1167 ---YIDSELIFAYAKTNRLTELEEFI----------AGPNV---A-NIQQVGDRCFEEKMYEAAKLLYSNVS-------- 1221 (1666)
T ss_pred ---cchHHHHHHHHHhchHHHHHHHh----------cCCCc---h-hHHHHhHHHhhhhhhHHHHHHHHHhh--------
Confidence 11223444555666655544332 12222 2 22345666666777766665554321
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--HHH---------------hhCCCChhHHHHHHHHHHHHHh
Q 010063 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI--TEK---------------YKGKEHPSFVTHLLNLAASYSR 427 (519)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~---------------~~~~~~~~~~~~~~~la~~~~~ 427 (519)
-+..|+..+...|+|..|....++|-.. +++ +.|-+-.-.++-+-.+...|..
T Consensus 1222 ----------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1222 ----------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHh
Confidence 2244666666667777776666655322 111 1111111122334556677888
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 010063 428 SKNFVEAERLLRICLDIM 445 (519)
Q Consensus 428 ~g~~~~A~~~~~~al~~~ 445 (519)
.|-+++-+.+++.++.+-
T Consensus 1292 rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred cCcHHHHHHHHHhhhchh
Confidence 888888888877777643
No 260
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.11 E-value=0.013 Score=42.67 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=61.2
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 010063 297 FIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 375 (519)
Q Consensus 297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 375 (519)
....|++.+|.+.+.+..+......... ......+..++|.++...|++++|+..+++++++.++. .|......+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~----~D~~~l~~a 83 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN----GDRRCLAYA 83 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH----CCHHHHHHH
Confidence 3568999999999999999876653222 11355678889999999999999999999999999874 455454444
Q ss_pred HHHHHH
Q 010063 376 RIDLAE 381 (519)
Q Consensus 376 ~~~la~ 381 (519)
+..+..
T Consensus 84 l~~~~~ 89 (94)
T PF12862_consen 84 LSWLAN 89 (94)
T ss_pred HHHHHH
Confidence 444443
No 261
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.08 E-value=0.0098 Score=43.24 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=54.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063 383 LHIVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (519)
Q Consensus 383 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (519)
..+.|++.+|.+.+.+..+......... ......+..++|.++...|++++|...+++++.+.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999998876653222 12345678889999999999999999999999999886
No 262
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.05 E-value=0.00053 Score=38.66 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHH
Q 010063 141 LQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ 182 (519)
Q Consensus 141 ~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 182 (519)
|++++++ .|..+.+++.+|.+|...|++++|+
T Consensus 2 y~kAie~----------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL----------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH----------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6788888 8999999999999999999999986
No 263
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.012 Score=51.86 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
..+.-+-.-|+-|+...+|..|...|.+++..- ..+....+..|.+.|.+....|+|..|+.-..+++.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 466667788999999999999999999998752 2344466778999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
.|....++..=+.++..+.++.+|..+++..+.+.
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 67778899999999999999999999999887764
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.02 E-value=0.0019 Score=39.13 Aligned_cols=42 Identities=36% Similarity=0.327 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 465 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 465 (519)
.++..+|..|...|++++|++.|+++++. +|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 36788999999999999999999999984 4566666666664
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.02 E-value=0.0024 Score=38.66 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (519)
.++..+|.+|...|++++|++.|+++++. .|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35778999999999999999999999997 5666677777764
No 266
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.00 E-value=0.0067 Score=48.68 Aligned_cols=92 Identities=10% Similarity=0.108 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhhhhhcCCCchHHHHHHHHHH
Q 010063 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL---KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG 210 (519)
Q Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 210 (519)
++.|.+.++..... +|..++.+++.|.++..+.++ .++...++.++.-.+..-.-+|....+++.+|
T Consensus 7 FE~ark~aea~y~~----------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lG 76 (186)
T PF06552_consen 7 FEHARKKAEAAYAK----------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLG 76 (186)
T ss_dssp HHHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHh----------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 35566666666555 788889999999988776554 33555555544433322222367777899999
Q ss_pred HHHHcccc----HHHHHHHHHHHHHHHHH
Q 010063 211 SMYSTLEN----YEKSMLVYQRVINVLES 235 (519)
Q Consensus 211 ~~~~~~g~----~~~A~~~~~~al~~~~~ 235 (519)
.+|...+. ..+|..+|++|...+++
T Consensus 77 nA~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 77 NAYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 99887653 44566666666665543
No 267
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.96 E-value=0.24 Score=49.50 Aligned_cols=250 Identities=16% Similarity=0.074 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHc-----cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010063 178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST-----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252 (519)
Q Consensus 178 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 252 (519)
...|..+++.+.... ...+...+|.+|.. ..|.+.|+.+++.+.....+.. +.....+.+.+|
T Consensus 228 ~~~a~~~~~~~a~~g---------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~lg 295 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGLG 295 (552)
T ss_pred hhHHHHHHHHHHhhc---------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccHHH
Confidence 456777776654432 12235566666653 4689999999999987311110 001233567889
Q ss_pred HHHhhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhcCCC
Q 010063 253 KVLGSIG-----RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 253 ~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
.+|.... ++..|..+|.++-+. ....+.+.+|.++..-. +...|..+|..|...
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------- 357 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-------- 357 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--------
Confidence 9988753 678899999988764 23467788898887655 567999999988763
Q ss_pred ChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEEC 399 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 399 (519)
....+...++.+|.. .-+...|..++.++.+. + ++. +...++..+.-. ++++.+.-.+...
T Consensus 358 --G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g--~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 358 --GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------G--NPS---AAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred --CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------c--Chh---hHHHHHHHHHHccccccHHHHHHHHH
Confidence 223466777877754 35788999999998876 1 111 112333333222 7777776666554
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc----C
Q 010063 400 LLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL----N 471 (519)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g 471 (519)
.+..-+. ....+..+......... ..+...+...+.++.. .....+...||.+|+.- .
T Consensus 424 a~~g~~~----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 424 AELGYEV----AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred HHhhhhH----HhhHHHHHHHhccccccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCCC
Confidence 4432221 01111111111111111 1245556666655544 22345667888888764 4
Q ss_pred ChHHHHHHHHHHHH
Q 010063 472 RDKEAEKLVLEALY 485 (519)
Q Consensus 472 ~~~~A~~~~~~a~~ 485 (519)
+++.|...|.++..
T Consensus 490 d~~~a~~~y~~a~~ 503 (552)
T KOG1550|consen 490 DPEKAAAQYARASE 503 (552)
T ss_pred ChHHHHHHHHHHHH
Confidence 58899999988865
No 268
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.93 E-value=0.0011 Score=37.33 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHH
Q 010063 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307 (519)
Q Consensus 268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 307 (519)
|++++++ +|....+++++|.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6788886 6888999999999999999999986
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.93 E-value=0.0026 Score=35.92 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
.++.++|.+|..+|++++|+..|++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57899999999999999999999999986
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.48 Score=46.56 Aligned_cols=32 Identities=13% Similarity=0.333 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRV 229 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 229 (519)
++.....++.++|..+..+..+++|.++|.+.
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445556777777777777777777777653
No 271
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.90 E-value=0.47 Score=46.16 Aligned_cols=181 Identities=15% Similarity=0.183 Sum_probs=107.2
Q ss_pred HHHHHHHccccHHHHHHHHHHH------HHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010063 208 HMGSMYSTLENYEKSMLVYQRV------INVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (519)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (519)
.++..+...|++.+|.+.|.+. ++++. -.-++..+.-+...|..++-..+.++--+......
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT----------DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k-- 704 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYT----------DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK-- 704 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC--
Confidence 4677888889999999888653 22221 11234556667777777766666665555444332
Q ss_pred CChhhHHHHHHHHHHHHhCCCHHHHHHHH------HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010063 282 ESADLVLPLFSLGSLFIKEGKAVDAESVF------SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (519)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (519)
.|. .-+.++...|+.++|+... +-++++.++. +......+..++..+.....+.-|-+.|.+.
T Consensus 705 -ePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 705 -EPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred -CcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 222 2356677888888888643 4455555443 2223334555566666666666666666553
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHhccCHHHH
Q 010063 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEA 434 (519)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 434 (519)
-+. ..+..++...+++++|..+.++ +|. ...+++-.|..+.+..++++|
T Consensus 774 gD~------------------ksiVqlHve~~~W~eAFalAe~------------hPe~~~dVy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 774 GDL------------------KSLVQLHVETQRWDEAFALAEK------------HPEFKDDVYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred ccH------------------HHHhhheeecccchHhHhhhhh------------CccccccccchHHHHhhhhhhHHHH
Confidence 222 2345667778888888776654 222 223555566666677777777
Q ss_pred HHHHHHH
Q 010063 435 ERLLRIC 441 (519)
Q Consensus 435 ~~~~~~a 441 (519)
.+.|.+|
T Consensus 824 qkAfhkA 830 (1081)
T KOG1538|consen 824 QKAFHKA 830 (1081)
T ss_pred HHHHHHh
Confidence 7666554
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.88 E-value=0.0029 Score=35.71 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.++.++|.+|..+|++++|+..|++++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578999999999999999999999999875
No 273
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.021 Score=50.40 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010063 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (519)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (519)
.+..+-.-|+-|++.++|..|+..|.++++. ..+++...+..|.|.|.+....|+|..|+.-..+++.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~------kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----- 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKK------KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----- 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh------cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 6667777899999999999999999999986 24667777889999999999999999999999998874
Q ss_pred CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
.|....+++.=|.|+..+.++++|..+.++.+.+.
T Consensus 149 ---~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ---KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ---CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 56677888888999999999999999988877654
No 274
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.27 Score=43.20 Aligned_cols=131 Identities=19% Similarity=0.164 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (519)
...+..+......|++.+|...+..+++. .++...+...++.+|...|+.+.|...+...-.-.. .+
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~----------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~---~~ 201 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQA----------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ---DK 201 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHh----------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch---hh
Confidence 33667778889999999999999999998 666688889999999999999999988876322110 00
Q ss_pred chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (519)
.... +......+.+.....+....-++. . .+|.....-+.+|..+...|+.++|.+.+-..+..
T Consensus 202 ~~~~---l~a~i~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 202 AAHG---LQAQIELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHH---HHHHHHHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0111 111112222222322222222221 1 12444566778999999999999999887666554
No 275
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.72 E-value=0.0046 Score=34.84 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.++..+|.++..+|++++|+++|++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999875
No 276
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.71 E-value=0.027 Score=45.35 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=53.6
Q ss_pred ChhHHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC----ChHHHHHHHHHH
Q 010063 411 HPSFVTHLLNLAASYSRSKNF---VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN----RDKEAEKLVLEA 483 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a 483 (519)
+|..++.+++-|.++..+.++ .++.+++++++.-+++.+. -+|....+++++|.+|..++ +..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 466677888888887776544 4566677777666655432 24777888999999998764 455777777777
Q ss_pred HHHHHHhcC
Q 010063 484 LYIREIAFG 492 (519)
Q Consensus 484 ~~~~~~~~~ 492 (519)
.+.+++...
T Consensus 100 ~~~FqkAv~ 108 (186)
T PF06552_consen 100 TEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766543
No 277
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.67 E-value=0.039 Score=37.42 Aligned_cols=72 Identities=8% Similarity=0.065 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (519)
...-++.+..++...+.++|+..++++++. ..+.++...++-.+..+|...|+|.+++.+...-+.+.+.+.
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k-------~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEK-------ITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhh-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344667787788999999999999999987 455778888899999999999999999998877777766543
No 278
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.67 E-value=0.0054 Score=34.55 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
.++..+|.++...|++++|+.+|++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999986
No 279
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.65 E-value=0.039 Score=49.70 Aligned_cols=134 Identities=11% Similarity=0.137 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCC
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSL 367 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (519)
+|..+.....+.+..+.|...|.+|.+ .......+|...|.+-.. .++.+.|..+|+.+++.+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS------ 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------
Confidence 344555666666668999999999974 223344567778888666 56666699999999998543
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
... .+......+...|+.+.|..+|++++.... ........|......-...|+.+....+.+++.+..
T Consensus 69 -~~~---~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~-----~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 69 -DPD---FWLEYLDFLIKLNDINNARALFERAISSLP-----KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp --HH---HHHHHHHHHHHTT-HHHHHHHHHHHCCTSS-----CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred -CHH---HHHHHHHHHHHhCcHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 222 335556788899999999999999986421 111123566677777788899999999888888764
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.65 E-value=0.61 Score=43.88 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHHh
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK-IYTKV 320 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~ 320 (519)
......+...+.+....|.++.|...+.++...... .......+....+.+....|+..+|+..++..++ .....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 456778889999999999999999999988764211 1122456667778999999999999999998887 22221
Q ss_pred c-------------------------CCCChhHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063 321 Y-------------------------GENDGRVGMAMCSLAHAKCAN------GNAEEAVELYKKALRVIKDSNYMSLDD 369 (519)
Q Consensus 321 ~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (519)
. .......+.++..+|...... +..+++...|.++....+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-------- 290 (352)
T PF02259_consen 219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-------- 290 (352)
T ss_pred cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh--------
Confidence 0 011123556677777777777 8888899999998887332
Q ss_pred hHHHHHHHHHHHHHHH
Q 010063 370 SIMENMRIDLAELLHI 385 (519)
Q Consensus 370 ~~~~~~~~~la~~~~~ 385 (519)
....+..+|..+..
T Consensus 291 --~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 291 --WEKAWHSWALFNDK 304 (352)
T ss_pred --HHHHHHHHHHHHHH
Confidence 23455666665544
No 281
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.59 E-value=0.083 Score=47.61 Aligned_cols=133 Identities=10% Similarity=0.073 Sum_probs=92.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG 326 (519)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (519)
|..+.......+..+.|..+|.+|++ .......+|...|.+-+. .++.+.|...|+.+++.+ +
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--------~ 67 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--------P 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------T
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------C
Confidence 44455666666778999999999963 233345677788888666 566666999999999865 2
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (519)
.....+......+...|+.+.|..+|++++... +.......+|......-...|+.+....+.+++.+..
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 333445555677889999999999999998752 1122134466777778888899999999988887764
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.50 E-value=0.0079 Score=33.87 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.++..+|.+|..+|++++|..+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 468899999999999999999999999986
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.47 E-value=0.0086 Score=33.72 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
.++..+|.+|...|++++|..+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 578899999999999999999999999864
No 284
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.18 E-value=1.1 Score=43.80 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=107.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010063 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246 (519)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 246 (519)
.++..+...|++.+|.++|.+.-.-.+.+. -....-++..+.-+...|..++-..+.++-.+-.... +.|..
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlE---myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---kePka-- 708 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALE---MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---KEPKA-- 708 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHH---HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---CCcHH--
Confidence 456777778999999888865322111100 0001114556667777777777666666554544433 22322
Q ss_pred HHHHHHHHHhhcCCHHHHHHHH------HHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 247 SLLGMAKVLGSIGRAKKAVEIY------HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
-|..+...|+.++|+.+. +-++++.++.. ......+..++..+.....+.-|.+.|.+.-+
T Consensus 709 ----AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----- 775 (1081)
T KOG1538|consen 709 ----AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----- 775 (1081)
T ss_pred ----HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----
Confidence 266777889998887653 34455544431 22234455556666666666666666655422
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (519)
...+..++...+++++|..+.++--+ ....++.-.|+.+....++++|.+.|.+|
T Consensus 776 -----------~ksiVqlHve~~~W~eAFalAe~hPe-------------~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 776 -----------LKSLVQLHVETQRWDEAFALAEKHPE-------------FKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred -----------HHHHhhheeecccchHhHhhhhhCcc-------------ccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 12244566678888888776654222 22234455667777777777777776554
No 285
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.89 E-value=0.033 Score=32.03 Aligned_cols=36 Identities=19% Similarity=-0.065 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010063 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (519)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 493 (519)
.++..||.+-...++|++|..-|++++++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999999999988764
No 286
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=1.9 Score=41.42 Aligned_cols=256 Identities=18% Similarity=0.129 Sum_probs=146.7
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 010063 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286 (519)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 286 (519)
+.....+...++.+. ....+++........++ +.-...-+..+...|+.+.|+..++.+++..-+ ...
T Consensus 235 ~~~~~~~~~~p~~d~--~~~~~~Ll~~~~~~p~g----a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~ 302 (546)
T KOG3783|consen 235 YQFISFVLGTPNPDG--EECEKALKKYRKRYPKG----ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVK 302 (546)
T ss_pred HHHHHHHcCCCCccH--HHHHHHhHHHHHhCCCC----ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHH
Confidence 334444555565555 44444444444433332 334456678888888888889998888772211 223
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHH--------HHCCCHHHHHHHHHHHHH
Q 010063 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAK--------CANGNAEEAVELYKKALR 357 (519)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al~ 357 (519)
...++.+|.++..+.+|..|...+....+.. +-..+ .|..++ -++ ...|+-++|..+++....
T Consensus 303 ~l~~fE~aw~~v~~~~~~~aad~~~~L~des-------dWS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~ 374 (546)
T KOG3783|consen 303 SLMVFERAWLSVGQHQYSRAADSFDLLRDES-------DWSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEE 374 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------hhhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHH
Confidence 4567788999999999999999988877642 11111 222233 222 224567777777666665
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHHcCC---------------------hHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010063 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGR---------------------GQEGRELLEECLLITEKYKGKEHPSFVT 416 (519)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~ 416 (519)
.....+ .+.|.-. .....+.-+...+. -.-+..-..++....+...-.+..+..-
T Consensus 375 l~~~a~---K~~P~E~-f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~l 450 (546)
T KOG3783|consen 375 LLANAG---KNLPLEK-FIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGL 450 (546)
T ss_pred HHHhcc---ccCchhH-HHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHH
Confidence 554421 1111100 00111222222220 0000001111111111111112233344
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHH
Q 010063 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-DKEAEKLVLEALYIR 487 (519)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~ 487 (519)
-+..+|.++..+|+...|..+|...++- +.....++.-...+++.+|..|..+|. ..++..++.+|.+..
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 5667899999999999999999988865 223344555667789999999999998 999999999998754
No 287
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.81 E-value=0.27 Score=33.50 Aligned_cols=66 Identities=18% Similarity=0.083 Sum_probs=54.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063 334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (519)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (519)
.-|.-++...+.++|+..+.++++.. .+.+....++..+..+|...|+|.+.+++...=+++.++.
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~-------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKI-------TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhc-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444567888999999999999873 4456677888999999999999999999988888887765
No 288
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.79 E-value=1.7 Score=40.69 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC---------------------CCChhhHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG---------------------TESADLVLPLFSLGSLFIK 299 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------~~~~~~~~~~~~la~~~~~ 299 (519)
+|..+.++..++.++..+|+...|.++.++|+-.++.... ..+.....++......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 5667889999999999999999999999999977764321 1123334566777788889
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 010063 300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379 (519)
Q Consensus 300 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l 379 (519)
.|-+..|.++.+-.+.+ .+.. +-..+...+-....+.++++--+++++.......+ .........-+..
T Consensus 116 RG~~rTAlE~~KlLlsL-----dp~~-DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~-----~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSL-----DPDE-DPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYR-----NWLSLLPNFAFSI 184 (360)
T ss_pred cCcHHHHHHHHHHHHhc-----CCCC-CcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh-----hhhhhCccHHHHH
Confidence 99999999999888876 2220 22334555666667888888777777765542111 0000111233667
Q ss_pred HHHHHHcCCh---------------HHHHHHHHHHHHHH
Q 010063 380 AELLHIVGRG---------------QEGRELLEECLLIT 403 (519)
Q Consensus 380 a~~~~~~g~~---------------~~A~~~~~~al~~~ 403 (519)
+.++...++- ++|...+.+|+...
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 7778878877 89999999998754
No 289
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=2.4 Score=41.57 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=76.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
+++.|...++..+|..++++|...+..... ...+..-+.....++.||....+.+.|.++++++.+.. |
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~----D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-------~ 425 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIIS----DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-------R 425 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccc----hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------c
Confidence 777888899999999999999988765322 22234446778899999999999999999999987764 2
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (519)
...-....+-.+....|+-.+|+..........
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 222223445556667788899998888776654
No 290
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.63 E-value=1.7 Score=39.58 Aligned_cols=182 Identities=15% Similarity=0.119 Sum_probs=120.6
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDGRVG 329 (519)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (519)
.....+++..|...+.++-.. .. ......++.+|..- .+..+|..+|+.+.+ ....
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~-------~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~ 109 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL-------GD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLA 109 (292)
T ss_pred cccccccHHHHHHHHHHhhhc-------CC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccH
Confidence 334567788888888777652 11 25666777777653 457888888885543 2334
Q ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC-------ChHHHHHHHHH
Q 010063 330 MAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-------RGQEGRELLEE 398 (519)
Q Consensus 330 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~ 398 (519)
.+..++|.+|.. ..+..+|..+|.++.+. +..+. ..+...++.+|..-+ +...|...|.+
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a--~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~ 180 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEA--ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRK 180 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhH--HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHH
Confidence 467779998887 45899999999998876 22221 223466777776642 22367777776
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC---
Q 010063 399 CLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN--- 471 (519)
Q Consensus 399 al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--- 471 (519)
+-... ...+...+|.+|.. ..++.+|..+|.++-+. .+ ......++ ++...|
T Consensus 181 aa~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g~g~ 239 (292)
T COG0790 181 AAELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNGEGV 239 (292)
T ss_pred HHHhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcCCCc
Confidence 65532 34577788888854 34889999999999872 22 45667778 666655
Q ss_pred ------------ChHHHHHHHHHHHH
Q 010063 472 ------------RDKEAEKLVLEALY 485 (519)
Q Consensus 472 ------------~~~~A~~~~~~a~~ 485 (519)
+...|..++..+..
T Consensus 240 ~~~~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 240 KKAAFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHH
Confidence 66677777776654
No 291
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.51 E-value=2.2 Score=39.98 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=104.3
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------------ccCCCCchHHHHHHHHHHHHHH
Q 010063 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------------NYMSLDDSIMENMRIDLAELLH 384 (519)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~ 384 (519)
.+|....++..++.++..+|+...|.+++++|+-.++.. .+..+++.....++......+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 357777899999999999999999999999998776632 0112223444556677788889
Q ss_pred HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 010063 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464 (519)
Q Consensus 385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 464 (519)
+.|-+..|.++.+-.+.+.. .++|. .++..+=....+.++++--++.++.......+..-..-|. ..+..+
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp----~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~a~S~a 185 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDP----DEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---FAFSIA 185 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCC----CCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---HHHHHH
Confidence 99999999999888776521 11332 3444444555677888777777665444211000001222 346677
Q ss_pred HHHHhcCCh---------------HHHHHHHHHHHHHH
Q 010063 465 ITLYHLNRD---------------KEAEKLVLEALYIR 487 (519)
Q Consensus 465 ~~~~~~g~~---------------~~A~~~~~~a~~~~ 487 (519)
.++...++. ++|...+++|+..+
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 888888888 89999999998755
No 292
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=1.6 Score=38.50 Aligned_cols=126 Identities=19% Similarity=0.098 Sum_probs=81.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchH
Q 010063 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (519)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (519)
.-+.-....|++.+|...+..++.. .+....+...++.+|...|+.+.|...+...=.-.. +..
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~- 202 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKA- 202 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhH-
Confidence 3455566789999999999999885 344456778899999999999999888775221111 111
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
...+......+.+.....+....-.+.- .+|+.......+|..+...|+.++|.+.+-..+.
T Consensus 203 -~~~l~a~i~ll~qaa~~~~~~~l~~~~a---------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 203 -AHGLQAQIELLEQAAATPEIQDLQRRLA---------ADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred -HHHHHHHHHHHHHHhcCCCHHHHHHHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111112233333333333333222221 3566667888999999999999999988766555
No 293
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.43 E-value=0.028 Score=31.22 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 459 PMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
+++.+|.++...|++++|...|++.++.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 57899999999999999999999998754
No 294
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.42 E-value=0.052 Score=31.24 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCC
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 451 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (519)
.++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999999998887543
No 295
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.31 E-value=0.047 Score=50.92 Aligned_cols=93 Identities=15% Similarity=0.055 Sum_probs=82.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (519)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (519)
+-+.....-+.++.|+..|.+|+++ +|..+..+.+-+..+...+++..|+.-+.++++. +|...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 4566777889999999999999997 6777778888889999999999999999999984 68888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 330 MAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
.+|...|......+++.+|...|+....+
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 89999999999999999999999988776
No 296
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.23 E-value=0.01 Score=52.48 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (519)
.....-..+...+..|.+++|++.+..++.+ +|..+..+...+.++..+++...|+.-+..++.+.
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~l----------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein---- 178 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIEL----------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN---- 178 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhccccccccc----------CCchhhhcccccceeeeccCCchhhhhhhhhhccC----
Confidence 3444555677789999999999999999988 88999999999999999999999999999988775
Q ss_pred CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
++.+.-|-..|.....+|++.+|...+..+.++
T Consensus 179 ---~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 179 ---PDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred ---cccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 444555666777888899999999999988775
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.12 E-value=1.4 Score=35.45 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=88.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 010063 294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 373 (519)
Q Consensus 294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 373 (519)
|.-|+..++-+++-..|..++++. ..+..++|+.-|....+. .....|.+
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA-----------------------~~~k~d~Alaaf~~lekt------g~g~YpvL- 95 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLA-----------------------QENKTDDALAAFTDLEKT------GYGSYPVL- 95 (221)
T ss_pred eeehhcccccccchHHHHHHHHHH-----------------------HcCCchHHHHHHHHHHhc------CCCcchHH-
Confidence 344555666666666666665543 235556666666554332 12223333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCC
Q 010063 374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV--THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 451 (519)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (519)
+....+.+....|+...|+..|.++-... ..|... .+...-+.++...|-|++-....+ ..-++
T Consensus 96 -A~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~srve-------pLa~d 161 (221)
T COG4649 96 -ARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVE-------PLAGD 161 (221)
T ss_pred -HHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHHHhh-------hccCC
Confidence 34567888888888888888887754321 223222 223334556677777766544333 22345
Q ss_pred CCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
.+|....+...||..-++.|++.+|..+|.+..+
T Consensus 162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666667777888888888888888888887765
No 298
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=95.12 E-value=0.98 Score=33.75 Aligned_cols=96 Identities=8% Similarity=-0.120 Sum_probs=70.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc-------hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010063 418 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-------ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (519)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 490 (519)
+..+|....+.+++-.++-.|++|+.+.++.......+ .+.+..+||..+..+|+.+=.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 45678888999999999999999999988874222211 23456799999999999999999999888766554
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHh
Q 010063 491 FGKDSLPVGKLFCFVLFGLVWFCL 514 (519)
Q Consensus 491 ~~~~~~~~~~~~~~~~l~~~~~~l 514 (519)
. |+-|.+.-......||-+-..+
T Consensus 84 i-PQCp~~~C~afi~sLGCCk~AL 106 (140)
T PF10952_consen 84 I-PQCPNTECEAFIDSLGCCKKAL 106 (140)
T ss_pred c-cCCCCcchHHHHHhhhccHHHH
Confidence 3 4566654445566777665444
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.09 E-value=0.33 Score=38.66 Aligned_cols=91 Identities=15% Similarity=0.023 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 010063 112 NDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI 191 (519)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 191 (519)
.+....+..+++.+..-...++.+++..++...-.+ .|..+..-..-|..++..|+|.+|+.+++.+..-
T Consensus 4 ~C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL----------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 4 QCSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL----------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred cCcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh----------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344556666888888888999999999988876665 7888888888999999999999999999986443
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHccccH
Q 010063 192 VDSLKDDEPLLDAILLHMGSMYSTLENY 219 (519)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (519)
. +....+--.++.|+...|+.
T Consensus 74 ~-------~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 74 A-------PGFPYAKALLALCLYALGDP 94 (160)
T ss_pred C-------CCChHHHHHHHHHHHHcCCh
Confidence 2 33333344567777777765
No 300
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.08 E-value=0.021 Score=53.20 Aligned_cols=95 Identities=16% Similarity=0.097 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
+-..+..++..++++.|+.+|.+++++ +|..+..+.+.+.++...+++..|+.-+.++++.. |
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l----------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-------P 69 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL----------DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-------P 69 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc----------CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-------c
Confidence 445777888999999999999999999 88888888888999999999999999998888664 8
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
....+|+.-|.+....+++.+|...|+....+
T Consensus 70 ~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 70 TYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred hhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 88888999999999999999999999887765
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.92 E-value=0.052 Score=30.08 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 417 HLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
+++.+|.++...|++++|...|++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6788999999999999999999999874
No 302
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.82 E-value=3.1 Score=37.91 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=108.6
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063 128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (519)
Q Consensus 128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
....+++..+...+..+-.. ..+.....++.+|.. ..+..+|..++..+... ...
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~------------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---------g~~ 109 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL------------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---------GLA 109 (292)
T ss_pred ccccccHHHHHHHHHHhhhc------------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc---------ccH
Confidence 34566777777777766542 111455666776654 44677888888854322 223
Q ss_pred HHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC-------CHHHHHHHHHHHH
Q 010063 204 AILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-------RAKKAVEIYHRVI 272 (519)
Q Consensus 204 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al 272 (519)
...+.+|..|.. ..+..+|..+|+++.... ++.-..+...++..|..-. +...|...|.++-
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-------~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa 182 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-------NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA 182 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence 346778888876 458999999999998752 2211344667777776642 2236777777765
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 010063 273 TILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 343 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 343 (519)
... ...+...+|.+|.. ..++.+|..+|.++-+. .+ ......++ ++...|
T Consensus 183 ~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 183 ELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG 236 (292)
T ss_pred Hhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence 541 45677888888765 34889999999999874 22 45677777 666555
No 303
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=4.1 Score=39.24 Aligned_cols=220 Identities=13% Similarity=0.024 Sum_probs=132.8
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (519)
....-+..+...|+.+.|+..++.+++..-+ ......++.+|.++..+.+|..|-..+....+.. +.
T Consensus 269 wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-------dW 335 (546)
T KOG3783|consen 269 WLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-------DW 335 (546)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------hh
Confidence 3566677778888888889988888772211 2335567788999999999999999988877652 11
Q ss_pred hhHHHHHHHH-HHH--------HhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH--------------------H--HHH
Q 010063 285 DLVLPLFSLG-SLF--------IKEGKAVDAESVFSRILKIYTKVYGENDGRVG--------------------M--AMC 333 (519)
Q Consensus 285 ~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--------------------~--~~~ 333 (519)
..+ .|..++ -++ ...|+-++|..+++...+..... |.+.|... . .+.
T Consensus 336 S~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~ 413 (546)
T KOG3783|consen 336 SHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYY 413 (546)
T ss_pred hHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc-cccCchhHHHHHHHHHHhccccccccccccchHH
Confidence 111 222222 222 22456666766666665554431 11111110 0 112
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010063 334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 413 (519)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (519)
.++.++ .|-..-+..-..++....... ... +.....--+.-+|.++...|+...|..+|...++-. .....+...
T Consensus 414 El~Y~W--ngf~~~s~~~l~k~~~~~~~~-~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~ 488 (546)
T KOG3783|consen 414 ELAYFW--NGFSRMSKNELEKMRAELENP-KID-DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWA 488 (546)
T ss_pred HHHHHH--hhcccCChhhHHHHHHHHhcc-CCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hhhcccccc
Confidence 222222 221111111112222222221 111 334444455778999999999999999999888652 222345566
Q ss_pred HHHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Q 010063 414 FVTHLLNLAASYSRSKN-FVEAERLLRICLDI 444 (519)
Q Consensus 414 ~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 444 (519)
.+.+++.+|.+|..+|. ..++..++.+|-+.
T Consensus 489 ~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 489 VPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred ccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 77899999999999999 99999999999874
No 304
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.43 E-value=1.5 Score=32.47 Aligned_cols=100 Identities=11% Similarity=0.100 Sum_probs=56.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHhhhhhcCCCc
Q 010063 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI----GDLKFVQSLLDMMSGIVDSLKDDE 199 (519)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~ 199 (519)
.+..++..|++-+|+++.+..+.. ..++......+..-|.++..+ .+.+-=..++.-+++-......-.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~-------h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR-------HGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH-------ccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 466789999999999999998876 222333335666677777543 333333333333333333222333
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVI 230 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 230 (519)
|..+..++.+|.-+-....|+++....++++
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 5556666666665544444445544444444
No 305
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.36 E-value=5.2 Score=38.57 Aligned_cols=96 Identities=7% Similarity=-0.138 Sum_probs=60.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
.......+..+ -+++..+.|++.+.. -|..+.+|......-+...+|+..+.+|.+++.-.-. -
T Consensus 23 w~~lire~qt~-~~~~~R~~YEq~~~~----------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-----l 86 (656)
T KOG1914|consen 23 WSQLIREAQTQ-PIDKVRETYEQLVNV----------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-----L 86 (656)
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHhcc----------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-----H
Confidence 33344444434 889999999998876 6667778888888888899999999999887654311 1
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (519)
++. ...+..+-...|+...+....-+|.+...
T Consensus 87 DLW--~lYl~YVR~~~~~~~~~r~~m~qAy~f~l 118 (656)
T KOG1914|consen 87 DLW--KLYLSYVRETKGKLFGYREKMVQAYDFAL 118 (656)
T ss_pred hHH--HHHHHHHHHHccCcchHHHHHHHHHHHHH
Confidence 111 12233344445555555555555555443
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.27 E-value=1.6 Score=34.80 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
+..+...+..+..+-...++.+++...+.-..-+ .|.....-..-|.++...|+|.+|+.+++.+.+
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~----- 72 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE----- 72 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-----
Confidence 3455667777888888889999998887755443 566777788889999999999999999999754
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHH
Q 010063 321 YGENDGRVGMAMCSLAHAKCANGNAE 346 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~ 346 (519)
..+....+--.++.++..+|+.+
T Consensus 73 ---~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 ---RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ---cCCCChHHHHHHHHHHHHcCChH
Confidence 34555555566788888888764
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.23 E-value=2.8 Score=34.94 Aligned_cols=83 Identities=11% Similarity=0.036 Sum_probs=57.8
Q ss_pred HHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010063 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292 (519)
Q Consensus 213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 292 (519)
++.+-.-++|...|.++-. ......+.....+|..|. ..+.++|+.++.+++++... ++.....++..
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~-------~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~s 183 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEG-------TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKS 183 (203)
T ss_pred HhhccCcHHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHH
Confidence 3444344567766655422 222344666777887776 67899999999999998533 33445788889
Q ss_pred HHHHHHhCCCHHHHH
Q 010063 293 LGSLFIKEGKAVDAE 307 (519)
Q Consensus 293 la~~~~~~g~~~~A~ 307 (519)
|+.++...|+++.|-
T Consensus 184 Las~~~~~~~~e~AY 198 (203)
T PF11207_consen 184 LASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHhcchhhhh
Confidence 999999999998875
No 308
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.18 E-value=3.6 Score=35.94 Aligned_cols=186 Identities=17% Similarity=0.128 Sum_probs=102.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG 326 (519)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (519)
+..+|.+....|+|++.+.+.++++.. +......-.+.++.+|-. .|..-.+...+.......+ +...+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~-------~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEM-------NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNE 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHT-------SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchh
Confidence 456788999999999999999999876 122223334444444432 2333333333332222111 11111
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC-CCchHHHHHHHHHHHHHHHc-----C-----ChHHHHHH
Q 010063 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS-LDDSIMENMRIDLAELLHIV-----G-----RGQEGREL 395 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 395 (519)
.... +..-|. ..=-++=.......+.+........ .+.......+-..|..|.-. | -.++|...
T Consensus 74 ~~~~----~i~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 74 KQVK----LIKDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp HHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 1111 111111 0011233344555555554421111 12222222333344444321 1 24689999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHh
Q 010063 396 LEECLLITEKYKGKEHPSFVTHLLNLAASY-SRSKNFVEAERLLRICLDIMTKT 448 (519)
Q Consensus 396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~ 448 (519)
|++|+.+....+++.+|.......+.+..| ...|+.++|....+++++-....
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999988899999888888888776 45899999999999998866543
No 309
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.76 E-value=0.84 Score=32.68 Aligned_cols=36 Identities=11% Similarity=-0.018 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhh
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (519)
+|....+.+.+|..+...|++++|++.+-.++....
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 888889999999999999999999999888776543
No 310
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=93.74 E-value=4.3 Score=35.41 Aligned_cols=186 Identities=14% Similarity=0.064 Sum_probs=104.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010063 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLD 368 (519)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (519)
+..++.+....|+|++.+.++++++... ..-...-.+.++.+|-. .|....+...+......... ...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~----~~~ 72 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN----KGN 72 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc----cch
Confidence 4568889999999999999999998861 11122223333433321 23334444444433332221 111
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--Chh-HHHHHHHHHHHHHh-----cc-----CHHHHH
Q 010063 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPS-FVTHLLNLAASYSR-----SK-----NFVEAE 435 (519)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~-~~~~~~~la~~~~~-----~g-----~~~~A~ 435 (519)
.... .+..-|.. .=-++=.......+.+....+-+. .+. ....+...|..|.- .| -.++|.
T Consensus 73 ~~~~-----~~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 73 EKQV-----KLIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp HHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence 1111 11111110 001222334444555444332111 122 22222334554432 22 247899
Q ss_pred HHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhcC
Q 010063 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIAFG 492 (519)
Q Consensus 436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~ 492 (519)
..|++|+.+....+.|.+|.......+.+..|+. .|+.++|....+++++-....++
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 9999999999998899999998888888887754 89999999999999987766554
No 311
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.73 E-value=4.6 Score=35.65 Aligned_cols=187 Identities=12% Similarity=0.024 Sum_probs=111.9
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC---C-------HHHHHHHHHHHHHHhhcC--------------CH
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---S-------ILLVTSLLGMAKVLGSIG--------------RA 261 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~~ 261 (519)
-+.+-.++...|+..+|+..+++=+.......++. . ...+.-+..+|.+..... -|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 45667888899999999999998888777665441 1 112223344454443332 12
Q ss_pred HHHHHHHHHHHHHHHHhcC-CC-Ch------------------hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 262 KKAVEIYHRVITILELNRG-TE-SA------------------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 262 ~~A~~~~~~al~~~~~~~~-~~-~~------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
..|-.+...-.+..+.... |+ .+ .....+................++++.+|++.++...
T Consensus 93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~ 172 (247)
T PF11817_consen 93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG 172 (247)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc
Confidence 3333333332333333310 01 00 0000000111111122334566888888888887653
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (519)
...........+|..|...|++++|..+++.+...+.+. .-......++..+..|+...|+.+..+.+.-+
T Consensus 173 --~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e----gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 173 --QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE----GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred --cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 233355566789999999999999999999998887763 33455567778889999999998877765443
No 312
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.70 E-value=5.8 Score=36.67 Aligned_cols=148 Identities=12% Similarity=0.056 Sum_probs=93.7
Q ss_pred ChhhHHHHHHHHHHHHhCCC------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 010063 283 SADLVLPLFSLGSLFIKEGK------------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 350 (519)
+|....++..+.......-. .+.-+.++++|++. +|.....+..+-....+..+.++..+
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 56666666666554433322 34445566666663 33333333334444556667777777
Q ss_pred HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC----------ChhHHHHHHH
Q 010063 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----------HPSFVTHLLN 420 (519)
Q Consensus 351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~ 420 (519)
-+++++.. .+....+...|...-..-...-.++.....|.+++.......... ......++..
T Consensus 87 ~we~~l~~-------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r 159 (321)
T PF08424_consen 87 KWEELLFK-------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR 159 (321)
T ss_pred HHHHHHHH-------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 78877775 344555555544444444445568899999999998876654322 2244566777
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHH
Q 010063 421 LAASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
+.....+.|..+.|+..++-.+++.
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8888899999999999999988864
No 313
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.53 E-value=0.065 Score=47.69 Aligned_cols=89 Identities=20% Similarity=0.137 Sum_probs=77.7
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 010063 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC 333 (519)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 333 (519)
-.+..|.+++|++.+..++.+ +|..+..+...+.++...++...|+.-+..++.+ +++.+.-|-
T Consensus 123 eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk 186 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK 186 (377)
T ss_pred HHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence 344578899999999999886 6778889999999999999999999999999985 567777777
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 334 SLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
..+.....+|++++|...+..+.++
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhc
Confidence 8888899999999999999998876
No 314
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=6.6 Score=36.73 Aligned_cols=193 Identities=16% Similarity=0.098 Sum_probs=131.2
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
-.........-+.++....++..|..++.+..-.+.+. .+......++..++.++.+.+..-.+..+.-.++....+-
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~--~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey 346 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG--CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY 346 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh
Confidence 33445666678889999999999999998887654332 2233456677778888888888888888877777666552
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH------HhccCHHHHHH
Q 010063 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY------SRSKNFVEAER 436 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~ 436 (519)
.- +......-.+++..+...|-.++|...+..++....-..|-+. .+.++...+.|+ ....+.+.+..
T Consensus 347 ---~l-dyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~d--rara~fvfanC~lA~a~s~~~e~ld~~~~ 420 (482)
T KOG4322|consen 347 ---SL-DYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDD--RARAIFVFANCTLAFALSCANESLDGFPR 420 (482)
T ss_pred ---cc-chhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhh--cceeEEEEEeeeecchhhhhhhhHHhhHH
Confidence 22 2222344467888999999999999999999876543322111 111111111111 14557888899
Q ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChH---HHHHHHHHHHH
Q 010063 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK---EAEKLVLEALY 485 (519)
Q Consensus 437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~a~~ 485 (519)
+++++-.++.+. ..|..+.++.+-++..|-..|+.+ ++...|+++..
T Consensus 421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 999999888876 456678888899999999999865 45555666554
No 315
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=5.1 Score=35.95 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 010063 265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 344 (519)
Q Consensus 265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 344 (519)
++-+.+.++-.++..| ......++.+.|..|.+.|+-+.|.+.+.+..+-.-... ...++......+|..|...
T Consensus 84 i~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~-- 157 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDH-- 157 (393)
T ss_pred HHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccH--
Confidence 3444445554444432 345678889999999999999999999998877543331 2344555666777777544
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063 345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (519)
Q Consensus 345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (519)
+--.+..+++-.+.++ |.|..........-|.......++.+|-.+|-.++..+
T Consensus 158 -~lV~~~iekak~liE~----GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 158 -DLVTESIEKAKSLIEE----GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred -HHHHHHHHHHHHHHHh----CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 3344444555555554 56665555555556777777888999999988877654
No 316
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=6.9 Score=36.57 Aligned_cols=197 Identities=14% Similarity=0.019 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (519)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (519)
+-...++....-+.++....++..|...+.+..-...+ +........++..++.++..-+....+..+.-.++....+
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 33444666777899999999999999999888654432 2234456677888888888888888888888887776655
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc---hHHHHHHHHHHHHHHHcCChHHHHHHH
Q 010063 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD---SIMENMRIDLAELLHIVGRGQEGRELL 396 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~ 396 (519)
.. .+...+..-.+++......|..+.|...+..++....-.+.+.... ...+.++..-+..+ ...+.+.+..++
T Consensus 346 y~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L 422 (482)
T KOG4322|consen 346 YS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYL 422 (482)
T ss_pred hc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHH
Confidence 42 2223444566788888999999999999999988765431111100 00011111111111 455678888888
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHH---HHHHHHHHHHH
Q 010063 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV---EAERLLRICLD 443 (519)
Q Consensus 397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~ 443 (519)
+++-.+..+.. -+....++.+.++..|-..|+.+ ++...|+++..
T Consensus 423 ~~A~~~f~kL~--~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 423 DLAQSIFYKLG--CHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHHcc--chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 88888887762 46667788889999999999865 45566666655
No 317
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.34 E-value=3.6 Score=33.22 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (519)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (519)
+..+..+...+..++|+.-|...-+. .....-.-+....+.+....|+...|+..|.++-... ..|.
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lekt--------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-----~~P~ 128 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKT--------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-----SIPQ 128 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-----CCcc
Confidence 34556667788888888877764332 2223334466788999999999999999998865543 1132
Q ss_pred H--HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010063 202 L--DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (519)
Q Consensus 202 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (519)
. ..+...-+..+...|-|++-.... +.+-++.+|....+...||..-++.|++.+|..+|.+...
T Consensus 129 ~~rd~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 129 IGRDLARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2 223445567778888887655433 3334566787788888999999999999999999998765
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=6.6 Score=40.04 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=39.3
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063 184 LLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (519)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (519)
.|.-|+.+++....+......++...|..++.+|++++|...|-+++...
T Consensus 349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 34445555555566667788889999999999999999999999987653
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.33 E-value=0.93 Score=35.48 Aligned_cols=91 Identities=10% Similarity=-0.083 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 010063 112 NDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI 191 (519)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 191 (519)
.+....+..+++.+..-...++.+++..++...--+ .|..+..-..-|..++..|+|.+|+.+++....-
T Consensus 4 qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL----------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 4 QCSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVL----------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 344445566777777777799999998888766555 7777778888899999999999999999886543
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHccccH
Q 010063 192 VDSLKDDEPLLDAILLHMGSMYSTLENY 219 (519)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (519)
. +.....--.++.|+...|+.
T Consensus 74 ~-------~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 A-------GAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred C-------CCchHHHHHHHHHHHhcCCh
Confidence 2 22222233466677666664
No 320
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=4.6 Score=35.54 Aligned_cols=132 Identities=11% Similarity=0.001 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 010063 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341 (519)
Q Consensus 262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 341 (519)
++-++-+.+.++-.+... .......++.++|..|...++.+.+.+++.+.+.-..... -..++..+-..+|.+|..
T Consensus 92 eeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 92 EEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhcc
Confidence 344455555555444433 2345678999999999999999999999998887554432 233455556667777765
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (519)
Q Consensus 342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (519)
+.-.++.++..+..++ + |.+...........|.......++.+|-.++-..+..+.
T Consensus 168 ~~vV~e~lE~~~~~iE---k----GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 168 RKVVEESLEVADDIIE---K----GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHHH---h----CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 5444554444444333 3 556555545555567777778888999888887776543
No 321
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.07 E-value=5.9 Score=34.96 Aligned_cols=188 Identities=12% Similarity=0.028 Sum_probs=111.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC---C---hh----hHHHHHHHHHHHHhCC--------------CH
Q 010063 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE---S---AD----LVLPLFSLGSLFIKEG--------------KA 303 (519)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~---~~----~~~~~~~la~~~~~~g--------------~~ 303 (519)
.+.+..++...|+..+|+.-+++=+..+....+.. . .. .+.-+..+|.+..... -|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 34567889999999999999998888877665431 1 00 1112233455444332 12
Q ss_pred HHHHHHHHHHHHHHHHhcC-CC-------------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 304 VDAESVFSRILKIYTKVYG-EN-------------------DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 304 ~~A~~~~~~al~~~~~~~~-~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
..|-.+...--+.+..... +. .+.....+................++++.+|...++..
T Consensus 93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~- 171 (247)
T PF11817_consen 93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY- 171 (247)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh-
Confidence 3333333222222222210 00 00000011111111112234456788899999988864
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (519)
........+...+|..|...|++++|..+++.+...+++. .-..-...++..+..|+...|+.+..+.+.-+.
T Consensus 172 ---~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 172 ---GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred ---ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3355556667889999999999999999999997776553 123344567788899999999988877665443
No 322
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.76 E-value=1.2 Score=37.02 Aligned_cols=83 Identities=18% Similarity=0.100 Sum_probs=59.1
Q ss_pred HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 010063 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464 (519)
Q Consensus 385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 464 (519)
.+-.-++|...|-++- |....+.+.....||..|. ..+.++|+.++.+++++.. +++.-...++..|+
T Consensus 118 sr~~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLa 185 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLA 185 (203)
T ss_pred hccCcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHH
Confidence 3333456665554432 3344456778888998887 5789999999999999753 33344566788999
Q ss_pred HHHHhcCChHHHHHH
Q 010063 465 ITLYHLNRDKEAEKL 479 (519)
Q Consensus 465 ~~~~~~g~~~~A~~~ 479 (519)
.++..+|+++.|.-+
T Consensus 186 s~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 186 SIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHHHhcchhhhhhh
Confidence 999999999998643
No 323
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=92.71 E-value=9.9 Score=36.63 Aligned_cols=178 Identities=12% Similarity=0.049 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccH-------HHHHHHHHHHHHHHHHh
Q 010063 164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENY-------EKSMLVYQRVINVLESR 236 (519)
Q Consensus 164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~~ 236 (519)
....+|+.++..|||+-|...|+.+.+-+.. .......+.++-..|.+....+.. ++...+++.|...+...
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~-Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN-DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh-chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 4678999999999999999999998876632 111123444555556666655533 37778888888777662
Q ss_pred cC---CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh---hHHHHHHHHHHH--HhCCCHHHHHH
Q 010063 237 YG---KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD---LVLPLFSLGSLF--IKEGKAVDAES 308 (519)
Q Consensus 237 ~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A~~ 308 (519)
.. ........+....+.++...|.+.+|...+-+.....-. .... .+..+-.+|.+| ...........
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~ 364 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSPGLT 364 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCccch
Confidence 11 111244566777788888999998888877666654210 1111 334444555555 11100000000
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 309 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
- ....+.-+..-|.-|...|+...|..+|.+++.++..
T Consensus 365 r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 365 R---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred h---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 0 1122323334467888999999999999999998764
No 324
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.70 E-value=0.19 Score=27.16 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 458 FPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
.++..+|.++...|++++|...+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35688999999999999999999999874
No 325
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.44 E-value=26 Score=40.72 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=58.1
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (519)
......+|...|++....|+++.|..+.-+|.+.. ...+....|..+..+|+...|+..+++.++...
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 55678999999999999999999999988887721 335678889999999999999999999997663
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.25 E-value=0.24 Score=25.73 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 010063 459 PMLHLGITLYHLNRDKEAEKLVLE 482 (519)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~ 482 (519)
+...+|.++...|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 567899999999999999998763
No 327
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.23 E-value=8 Score=34.41 Aligned_cols=203 Identities=14% Similarity=0.043 Sum_probs=101.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHhhccCCCCchHH
Q 010063 294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKALRVIKDSNYMSLDDSIM 372 (519)
Q Consensus 294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~ 372 (519)
+..+.+.|++..|.++..-.++.+.+.. .+.......+++.+....+.-+ +-..+.+++++.. +. +..+..-
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~---~~~~~Gd 89 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KF---GSYKFGD 89 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HT---SS-TT--
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-cc---CCCCCCC
Confidence 3445556666666666666666665532 1222223345666665554332 4556677777776 32 2333344
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH-----------HHHHHHhhCCCChhHHHHHH-HHHHHHHhccCHHHHHHHHHH
Q 010063 373 ENMRIDLAELLHIVGRGQEGRELLEEC-----------LLITEKYKGKEHPSFVTHLL-NLAASYSRSKNFVEAERLLRI 440 (519)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~ 440 (519)
...+..+|..+.+.|++.+|..++-.+ +...... ..+.....+. ....-|...++...|...+..
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~---~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK---GYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH---TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh---cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 566788999999999999999887321 1111111 1122222232 233457778999999988877
Q ss_pred HHHHHHHh----------cCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH
Q 010063 441 CLDIMTKT----------VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLV 510 (519)
Q Consensus 441 al~~~~~~----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 510 (519)
-.+...+. ..+..|. ......|-.+. ..+ +...|....+.+...+.. +......+..||..
T Consensus 167 f~~~~~~~~p~~~~~~~~~~~~~Pl-lnF~~lLl~t~-e~~----~~~~F~~L~~~Y~~~L~r---d~~~~~~L~~IG~~ 237 (260)
T PF04190_consen 167 FTSKLIESHPKLENSDIEYPPSYPL-LNFLQLLLLTC-ERD----NLPLFKKLCEKYKPSLKR---DPSFKEYLDKIGQL 237 (260)
T ss_dssp HHHHHHHH---EEEEEEEEESS-HH-HHHHHHHHHHH-HHT-----HHHHHHHHHHTHH---H---HHHTHHHHHHHHHH
T ss_pred HHHHHhccCcchhccccCCCCCCch-HHHHHHHHHHH-hcC----cHHHHHHHHHHhCccccc---cHHHHHHHHHHHHH
Confidence 77653322 0011121 11122222222 233 346677776666654432 22334668889999
Q ss_pred HHHhh
Q 010063 511 WFCLL 515 (519)
Q Consensus 511 ~~~lg 515 (519)
|....
T Consensus 238 yFgi~ 242 (260)
T PF04190_consen 238 YFGIQ 242 (260)
T ss_dssp HH---
T ss_pred HCCCC
Confidence 98754
No 328
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=5.3 Score=36.03 Aligned_cols=90 Identities=24% Similarity=0.337 Sum_probs=68.9
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (519)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (519)
-+.+|.++|+++.++..+..+.. ..+.........+|.++...||..++.+.+.......+.+..-.+.+...++.
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 44568999999999998876653 22345566778899999999999999999999998888877777766666777
Q ss_pred HHHHHH-ccccHHHH
Q 010063 209 MGSMYS-TLENYEKS 222 (519)
Q Consensus 209 l~~~~~-~~g~~~~A 222 (519)
++.-|+ ..|++...
T Consensus 162 lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHhHHHH
Confidence 776655 45776553
No 329
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=92.18 E-value=12 Score=36.16 Aligned_cols=180 Identities=13% Similarity=0.010 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHHH
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA-------VDAESVFSRILKIYT 318 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~ 318 (519)
.....+|...+..|+|+-|...|+.+.+-+..- ......+.+.-..|.+....+.. ++...+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 345678999999999999999999988766431 12233445555566666665533 477888899888887
Q ss_pred HhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HhhccCCCCchHHHHHHHHHHHHH--HHcCChHH
Q 010063 319 KVYGE---NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI--KDSNYMSLDDSIMENMRIDLAELL--HIVGRGQE 391 (519)
Q Consensus 319 ~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~ 391 (519)
+...+ .......+....+.++...|.+.+|...+-+..... ... .....+-.+..+|.++ ........
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l-----~~~~~alllE~~a~~~~~~~~~~~~~ 361 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL-----RPFGSALLLEQAAYCYASLRSNRPSP 361 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh-----hhHhhHHHHHHHHHhhcccccCCCCc
Confidence 73211 122445566677888888999888877766665542 111 0000233444555555 11100000
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
-..- ....+.-+..-|.-|...|+...|..+|.+++.++..
T Consensus 362 ~~~r---------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 362 GLTR---------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred cchh---------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 0000 1112222333467889999999999999999998753
No 330
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.08 E-value=2 Score=27.07 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (519)
..++.+|..+...|+|++|..+.+.++++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 35778999999999999999999999998
No 331
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.07 E-value=13 Score=36.50 Aligned_cols=128 Identities=13% Similarity=-0.010 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 010063 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 405 (519)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 405 (519)
+.....|..-...-...|+++...-.+++++--+.. ....|...+......|+.+-|...+..+.++..
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~----------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~- 362 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL----------YDEFWIKYARWMESSGDVSLANNVLARACKIHV- 362 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh----------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-
Confidence 344556666677778899999999999998865432 234567778888888999988888888877652
Q ss_pred hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHH
Q 010063 406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 478 (519)
Q Consensus 406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 478 (519)
+....+...-+.+-...|+++.|...++...+ +-|....+-..-..+...+|+.+.+..
T Consensus 363 ------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~--------e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 363 ------KKTPIIHLLEARFEESNGNFDDAKVILQRIES--------EYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred ------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh--------hCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 33334445556677788999999999998776 225665555566677788888888875
No 332
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.02 E-value=0.39 Score=46.13 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=75.4
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (519)
++..|..+...|+...|..++..|+..... .....+.++|.+....|-...|-..+.+++.+. ..
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~s 674 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SS 674 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------cc
Confidence 344455555689999999999999875321 223346688999999999999999999999884 12
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
.....+.+|++|....+.+.|++.+++|++.
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 2356678999999999999999999999985
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.96 E-value=0.24 Score=26.68 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 288 LPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
.++..+|.++...|++++|...+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45778999999999999999999999874
No 334
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.87 E-value=2.1 Score=26.94 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
.++.+|..+.+.|+|++|..+.+.++++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 5678899999999999999999999998
No 335
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.67 E-value=9.3 Score=33.99 Aligned_cols=215 Identities=8% Similarity=-0.015 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHhhh
Q 010063 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLK-FVQSLLDMMSGIV 192 (519)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~ 192 (519)
....++.++.-+..+.+.|++..|.++..-.++.+.+.. .+........+..+....+.-+ +-..+.++++++.
T Consensus 6 y~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~-----~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS 80 (260)
T PF04190_consen 6 YDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSE-----DPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS 80 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 344556688888999999999999999988888876632 2222333456666666655433 4556677888887
Q ss_pred hhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHH-----------HHHHhcCCCCHHHHHHHHHHHHHHhhcCCH
Q 010063 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN-----------VLESRYGKTSILLVTSLLGMAKVLGSIGRA 261 (519)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 261 (519)
..+....-....+..+|..+++.|++.+|..++-..-. ..... +.. .+...........|...++.
T Consensus 81 -~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~~-~e~dlfi~RaVL~yL~l~n~ 157 (260)
T PF04190_consen 81 -KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GYP-SEADLFIARAVLQYLCLGNL 157 (260)
T ss_dssp -HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TSS---HHHHHHHHHHHHHHTTBH
T ss_pred -ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cCC-cchhHHHHHHHHHHHHhcCH
Confidence 43444334455688999999999999999988743211 11111 111 11122222333446678999
Q ss_pred HHHHHHHHHHHHHHHHhc----------CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 010063 262 KKAVEIYHRVITILELNR----------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 331 (519)
Q Consensus 262 ~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 331 (519)
..|...+..-.+...... ....|.. .....|-.+. ..+ +...|....+.++.... .+|.....
T Consensus 158 ~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~Pll-nF~~lLl~t~-e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~~ 230 (260)
T PF04190_consen 158 RDANELFDTFTSKLIESHPKLENSDIEYPPSYPLL-NFLQLLLLTC-ERD----NLPLFKKLCEKYKPSLK-RDPSFKEY 230 (260)
T ss_dssp HHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHH-HHHHHHHHHH-HHT-----HHHHHHHHHHTHH----HHHHTHHH
T ss_pred HHHHHHHHHHHHHHhccCcchhccccCCCCCCchH-HHHHHHHHHH-hcC----cHHHHHHHHHHhCcccc-ccHHHHHH
Confidence 999988877776532221 0112221 1111122222 223 34566666665554331 23455666
Q ss_pred HHHHHHHHHHCC
Q 010063 332 MCSLAHAKCANG 343 (519)
Q Consensus 332 ~~~la~~~~~~g 343 (519)
+..+|..|+...
T Consensus 231 L~~IG~~yFgi~ 242 (260)
T PF04190_consen 231 LDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHH---
T ss_pred HHHHHHHHCCCC
Confidence 777787777643
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.65 E-value=0.3 Score=25.30 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Q 010063 288 LPLFSLGSLFIKEGKAVDAESVFS 311 (519)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~ 311 (519)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356789999999999999998875
No 337
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.51 E-value=0.66 Score=44.68 Aligned_cols=91 Identities=24% Similarity=0.361 Sum_probs=72.4
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 010063 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332 (519)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 332 (519)
..+...|+...|..++..|+... .......+.+|+.++...|-...|-.++.+++.+. .......
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~sepl~~ 679 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SSEPLTF 679 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------ccCchHH
Confidence 33455799999999999998652 22334567789999999999999999999999874 1122356
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 333 CSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
..+|..+....+.+.|++.+++|++.
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 77899999999999999999999987
No 338
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=9.4 Score=33.69 Aligned_cols=133 Identities=17% Similarity=0.082 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010063 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 423 (519)
Q Consensus 344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 423 (519)
.-++-++-+++.++-.++. ........++.++|..|.+.++.+.+.+.+.+.+.-..... -..++.-+...+|.
T Consensus 90 kneeki~Elde~i~~~eed----ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~ 163 (412)
T COG5187 90 KNEEKIEELDERIREKEED----NGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGL 163 (412)
T ss_pred hhHHHHHHHHHHHHHHhhc----ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHH
Confidence 3345555666666555442 22344567889999999999999999999998877554432 33455556667787
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
+|..+.-.++.++... .+.++-.+.+......+|. |.......++.+|..++-..+..+
T Consensus 164 ~y~d~~vV~e~lE~~~---~~iEkGgDWeRrNRyK~Y~--Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 164 IYGDRKVVEESLEVAD---DIIEKGGDWERRNRYKVYK--GIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred hhccHHHHHHHHHHHH---HHHHhCCCHHhhhhHHHHH--HHHHHHHHhhHHHHHHHHHHhccc
Confidence 7766554444444443 3333322222223333333 344445567788877777666544
No 339
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.48 E-value=4.5 Score=29.98 Aligned_cols=105 Identities=11% Similarity=0.024 Sum_probs=59.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHhcCCCCc
Q 010063 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS----KNFVEAERLLRICLDIMTKTVGPDDQ 454 (519)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 454 (519)
+|.-+...|++-+|+++.++.+....+ +......+...|.++..+ .+.+-=..++.-+++-+.+... -.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 466788999999999999998875422 222224455566666543 3444444555555554444322 134
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCC
Q 010063 455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 496 (519)
Q Consensus 455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 496 (519)
..+..++.+| +.-....+|++++...++.+.-..|
T Consensus 76 ~~A~~L~~la-------~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 76 DSAHSLFELA-------SQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred hHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHhcccCC
Confidence 4444444444 4445556666666666655444433
No 340
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.16 E-value=15 Score=35.58 Aligned_cols=209 Identities=13% Similarity=0.076 Sum_probs=110.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC-chHHHHHHHHHHHHHHccc---cHHHHHHHHHHHHHHHHHhcCCCCH
Q 010063 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD-EPLLDAILLHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSI 242 (519)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~ 242 (519)
..+..+...|+...|...-.++..+.+..-.. .......++.++..-...- .++.....+++.+.+.. .
T Consensus 291 ~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~-------~ 363 (656)
T KOG1914|consen 291 EISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED-------I 363 (656)
T ss_pred HhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc-------c
Confidence 44555566666655555444444444321100 0111112223332221111 24444555555554422 1
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (519)
...-++..+-..-.+..-...|..+|.++-+.-. .+....+...+- -|...++..-|...|+-.++.+
T Consensus 364 ~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r------~~hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf----- 431 (656)
T KOG1914|consen 364 DLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR------TRHHVFVAAALM-EYYCSKDKETAFRIFELGLKKF----- 431 (656)
T ss_pred CCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC------CcchhhHHHHHH-HHHhcCChhHHHHHHHHHHHhc-----
Confidence 1122333444444555667777777777755311 111222222222 2556788999999998887753
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
++.|..... ....+...++-..|..+|++++.. ..+......+|..+-..-..-|+....+++-++-...
T Consensus 432 ~d~p~yv~~---YldfL~~lNdd~N~R~LFEr~l~s-------~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 432 GDSPEYVLK---YLDFLSHLNDDNNARALFERVLTS-------VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred CCChHHHHH---HHHHHHHhCcchhHHHHHHHHHhc-------cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 234444433 345667788888999999998875 1223333456666666677778888777776665554
Q ss_pred HH
Q 010063 403 TE 404 (519)
Q Consensus 403 ~~ 404 (519)
+.
T Consensus 502 f~ 503 (656)
T KOG1914|consen 502 FP 503 (656)
T ss_pred cc
Confidence 44
No 341
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.16 E-value=5.1 Score=37.13 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (519)
.-.++..+|.-|...|+++.|++.|-++.+.+... ..+...+.++..+-...|+|..-..+..++..........
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence 45678889999999999999999999988877543 4677788888888889999988888888877652110000
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (519)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (519)
...-+....+.. |.+....++|..|..++-.+
T Consensus 224 ~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 224 AQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhC
Confidence 111111223333 44445556888888777543
No 342
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=11 Score=33.91 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC
Q 010063 223 MLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 302 (519)
Q Consensus 223 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 302 (519)
++-+.+.++-.++..| ......++.+.|..|...|+-+.|.+.+.+..+-.-... ..-+.......+|..|....-
T Consensus 84 i~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~~l 159 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDHDL 159 (393)
T ss_pred HHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccHHH
Confidence 3444444444444333 246678899999999999999999999988876543332 223445566677777765443
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 303 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 303 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
..+. .+++-.+.++ |.+....-..-..-|.......+|.+|-.+|-.++..+..
T Consensus 160 V~~~---iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 160 VTES---IEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHH---HHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 3333 3333333333 2232222222333456666778899999998888876543
No 343
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.04 E-value=13 Score=34.41 Aligned_cols=128 Identities=12% Similarity=0.098 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHH
Q 010063 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMY 213 (519)
Q Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (519)
.+.-+.++++|++. +|.....+..+-.......+.++..+-+++++... +..+.+-..|...-...
T Consensus 47 ~E~klsilerAL~~----------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~----~~~~~LW~~yL~~~q~~ 112 (321)
T PF08424_consen 47 AERKLSILERALKH----------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN----PGSPELWREYLDFRQSN 112 (321)
T ss_pred HHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHH
Confidence 34556667777665 44555555555555556666666666677666543 33344433344433333
Q ss_pred HccccHHHHHHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063 214 STLENYEKSMLVYQRVINVLESRYGKT----------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (519)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (519)
...-.++.....|.+++.......... ......++..+.......|..+.|+..++-.+++.
T Consensus 113 ~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 113 FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 445578899999999988776653332 22456677788888899999999999999998873
No 344
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.88 E-value=5.8 Score=31.23 Aligned_cols=89 Identities=19% Similarity=0.164 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
......+..+...-...++.+++...+...--+ .|.....-..-|.++...|+|.+|+..++...+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~------ 72 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLS------ 72 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc------
Confidence 344455555666666689999988877654433 566666777789999999999999999998765
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHH
Q 010063 322 GENDGRVGMAMCSLAHAKCANGNAE 346 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~ 346 (519)
+.+........++.++..+|+.+
T Consensus 73 --~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 73 --SAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred --cCCCchHHHHHHHHHHHhcCChH
Confidence 22333334445677777777653
No 345
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.77 E-value=0.66 Score=40.86 Aligned_cols=67 Identities=9% Similarity=-0.020 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (519)
.+....+..+....+.|+.++|..+|+.|+.+ .|..++++..+|...-...+.-+|..+|-+++.+.
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal----------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALAL----------APTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc----------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 34445677788899999999999999999999 88889999999999988899999999999988765
No 346
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.65 E-value=4.6 Score=37.42 Aligned_cols=108 Identities=7% Similarity=-0.003 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh-
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR- 236 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 236 (519)
......++..+|.-|...|+++.|++.|.++..... ........+.++..+-...|+|..-..+..+|.......
T Consensus 146 KEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT----s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 146 KESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCT----SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhc----chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 344567889999999999999999999999777763 335666678888888888999998888888887652100
Q ss_pred -cCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010063 237 -YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 271 (519)
Q Consensus 237 -~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 271 (519)
....-+....+. -|.+....++|..|..++-.+
T Consensus 222 ~~~q~v~~kl~C~--agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 222 NLAQEVPAKLKCA--AGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHhcCcchHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 001111123333 355555566888888887655
No 347
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.44 E-value=41 Score=39.24 Aligned_cols=110 Identities=18% Similarity=0.184 Sum_probs=76.6
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (519)
....+.+|...|.+....|+++.|..++-+|.+.. ...+....|..+..+|+-..|+..+++.++...
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r------------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR------------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc------------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 45688999999999999999999999888877652 134557889999999999999999999997654
Q ss_pred HhhCCC---Chh------HHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHH
Q 010063 405 KYKGKE---HPS------FVTHLLNLAASYSRSKNF--VEAERLLRICLDIMT 446 (519)
Q Consensus 405 ~~~~~~---~~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~ 446 (519)
...... .|. ...+...++......|++ ..-+.+|.++.++..
T Consensus 1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 321111 111 112344455555566663 334566777776543
No 348
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.39 E-value=16 Score=34.58 Aligned_cols=138 Identities=13% Similarity=0.073 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHH--HHHHH-HHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE--VAILD-IIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (519)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (519)
.+...+-.+.+++++.+|...|.+..+.... .|.. .+++. .+-++| -+.+.+.-...+-...+. .
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~-------~~f~lkeEvl~grilnAf-fl~nld~Me~~l~~l~~~----~ 75 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKES-------SPFLLKEEVLGGRILNAF-FLNNLDLMEKQLMELRQQ----F 75 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhc-------chHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHh----c
Confidence 3667788899999999999999998776332 2211 12332 233333 344444444433333222 2
Q ss_pred CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH----------HHHHHHHHHHHHHhhcCCHHHHHH
Q 010063 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI----------LLVTSLLGMAKVLGSIGRAKKAVE 266 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~ 266 (519)
+..+. ...-.|...++++.+.+|++.+..-.+..... ..+ .....-...+.++...|++.++..
T Consensus 76 ~~s~~---l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~ 149 (549)
T PF07079_consen 76 GKSAY---LPLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRA 149 (549)
T ss_pred CCchH---HHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHH
Confidence 33333 24456777889999999998776554432211 111 011122346888999999999999
Q ss_pred HHHHHHHHH
Q 010063 267 IYHRVITIL 275 (519)
Q Consensus 267 ~~~~al~~~ 275 (519)
.+++.+...
T Consensus 150 iLn~i~~~l 158 (549)
T PF07079_consen 150 ILNRIIERL 158 (549)
T ss_pred HHHHHHHHH
Confidence 999987654
No 349
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.25 E-value=16 Score=34.23 Aligned_cols=118 Identities=10% Similarity=0.031 Sum_probs=84.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCC-CCh--HH-----HHHHHHHHHHHHhcCChHHH
Q 010063 110 GMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGN-KGI--EE-----VAILDIIALGYVYIGDLKFV 181 (519)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~--~~-----~~~~~~l~~~~~~~g~~~~A 181 (519)
.....+..++..+..+...+++++|..|..-|..+|+++.+....+. ..+ +. ..+-..+..||..+++.+-|
T Consensus 168 ~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlA 247 (569)
T PF15015_consen 168 FLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLA 247 (569)
T ss_pred cChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 33445556666777888899999999999999999999877532222 111 11 12335688999999999999
Q ss_pred HHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063 182 QSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (519)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (519)
+....+.+.+. |....-+...+.++....+|.+|-..+--+.-++.
T Consensus 248 Lnh~hrsI~ln-------P~~frnHLrqAavfR~LeRy~eAarSamia~ymyw 293 (569)
T PF15015_consen 248 LNHSHRSINLN-------PSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYW 293 (569)
T ss_pred HHHHhhhhhcC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888776554 44444567778899999999999887766655443
No 350
>PRK14707 hypothetical protein; Provisional
Probab=89.96 E-value=43 Score=38.73 Aligned_cols=324 Identities=10% Similarity=0.011 Sum_probs=160.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHH--HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010063 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL--LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL 244 (519)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 244 (519)
.++.++-..++|.+...+-..+..+...+..+ +.....+ ..+++++....++.++-.+-.-+..+...+........
T Consensus 878 evantLNALSKWPd~~~C~~AA~aLA~rL~~d-~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~ 956 (2710)
T PRK14707 878 GVVIVLNALSKWPNVPVCAAAASALAERLADE-PELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLRE 956 (2710)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHHhcC-HHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhh
Confidence 45566666777777666666666665554322 3322222 24566666666666554444444444444322111111
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (519)
...-..+++++...+++.+...+-.-+..+..... +.+.... .-..+++++....+|.++-.+-.-+..+...+-
T Consensus 957 Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~--~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa- 1033 (2710)
T PRK14707 957 ALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV--DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS- 1033 (2710)
T ss_pred hccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh--ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc-
Confidence 22223456666667777766555555555544432 1111111 223456666666677665555555555555442
Q ss_pred CCChhHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchH-HHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063 323 ENDGRVG--MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLEEC 399 (519)
Q Consensus 323 ~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (519)
..+... ..-..++.++....++.+...+-.-+..+.... ..+... ....-..++.++...-++.+.-.+-+-+
T Consensus 1034 -~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL---~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa 1109 (2710)
T PRK14707 1034 -NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERL---SDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAA 1109 (2710)
T ss_pred -cCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHh---hccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHH
Confidence 223322 223345666666667665544444444443321 111110 0111145667777777777777777777
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063 400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479 (519)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 479 (519)
+.+...+.....+........++.+.....++.....+=.-+..+..+......-.....-..++..+-...++.+.-.+
T Consensus 1110 ~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac 1189 (2710)
T PRK14707 1110 SALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVC 1189 (2710)
T ss_pred HHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHH
Confidence 77776664444433333334445555444444433333333333333332111111112224566777777777777777
Q ss_pred HHHHHHHHHHhcCCCCCcc
Q 010063 480 VLEALYIREIAFGKDSLPV 498 (519)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~ 498 (519)
-+-++.+....-+..+|.-
T Consensus 1190 ~~A~~~La~rlG~a~~P~r 1208 (2710)
T PRK14707 1190 RSAFVLLAERAGSAELPWR 1208 (2710)
T ss_pred HHHHHHHHHhhcCCCCCch
Confidence 7777777766555555543
No 351
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.93 E-value=12 Score=38.37 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
|.-|+.+++... .+.......+...|..++..|++++|...|-+++..
T Consensus 350 y~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 350 YKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 334444444431 223346667788899999999999999999988765
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.80 E-value=20 Score=34.74 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=85.2
Q ss_pred HhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010063 173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252 (519)
Q Consensus 173 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 252 (519)
...|+++++.+.... .++.... | ......++..+..+|.++.|+.+.+.- ...+
T Consensus 272 v~~~d~~~v~~~i~~-~~ll~~i----~--~~~~~~i~~fL~~~G~~e~AL~~~~D~----------------~~rF--- 325 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAA-SNLLPNI----P--KDQGQSIARFLEKKGYPELALQFVTDP----------------DHRF--- 325 (443)
T ss_dssp HHTT-HHH-----HH-HHTGGG--------HHHHHHHHHHHHHTT-HHHHHHHSS-H----------------HHHH---
T ss_pred HHcCChhhhhhhhhh-hhhcccC----C--hhHHHHHHHHHHHCCCHHHHHhhcCCh----------------HHHh---
Confidence 346788887666632 1222111 1 112556777888899888888755431 1122
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 010063 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332 (519)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 332 (519)
.+....|+.+.|.+..++. .....|..||.....+|+++-|+..|+++-+ +
T Consensus 326 eLAl~lg~L~~A~~~a~~~-------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~ 376 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKEL-------------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------------F 376 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCC-------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------H
T ss_pred HHHHhcCCHHHHHHHHHhc-------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------c
Confidence 3345678888876654322 2345888999999999999999999988643 3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (519)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (519)
..|..+|...|+.+.=.++...+... .+. +..-.++...|+.++.++++.++
T Consensus 377 ~~L~lLy~~~g~~~~L~kl~~~a~~~--------~~~-------n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 377 SGLLLLYSSTGDREKLSKLAKIAEER--------GDI-------NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHT--------T-H-------HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cccHHHHHHhCCHHHHHHHHHHHHHc--------cCH-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 44566777788865544444333321 111 11223455567777776666553
No 353
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=89.79 E-value=7 Score=29.42 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=57.7
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (519)
+..+|....+.+++-.++-.|++|+.+.++....+.. ..+.+..++|..+..+|+.+-.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678888899999999999999999998876322211 234567899999999999999999998887665444
No 354
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.66 E-value=6.2 Score=37.24 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
++..+..++.-.|+|..|++.++..---.+.....-.+-...+++.+|.+|..+++|.+|++.|...+-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577888999999999998876532111111222234556788999999999999999999999988765443
No 355
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=89.43 E-value=10 Score=30.93 Aligned_cols=164 Identities=8% Similarity=0.032 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHH-hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHH-----ccccHHHHHHHHHHHHHHHH
Q 010063 161 EVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS-----TLENYEKSMLVYQRVINVLE 234 (519)
Q Consensus 161 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~ 234 (519)
.++....||..+- -+.+|++|..+|.. .-+....+...+.+|..+. ..+++..|++.+..+-+.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~--------nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-- 102 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKK--------NCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-- 102 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHh--------cccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--
Confidence 3444555554432 23455555555543 1222233344566666554 345788888888877652
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhc-----CC--HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh--------
Q 010063 235 SRYGKTSILLVTSLLGMAKVLGSI-----GR--AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-------- 299 (519)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~~-----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------- 299 (519)
+. ..+..++|.++..- ++ ..+|++++.++-++ ....+.++|...|..
T Consensus 103 -----n~---~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ 164 (248)
T KOG4014|consen 103 -----NI---PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTN 164 (248)
T ss_pred -----CC---HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhccc
Confidence 22 34555666666543 23 67788888887654 112333344433332
Q ss_pred ----------------CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q 010063 300 ----------------EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVI 359 (519)
Q Consensus 300 ----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 359 (519)
..+.+.|.++.-+|-++ ....+..|+.+.|-. -.+.++|..+-.+|.++.
T Consensus 165 ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 165 APGEGKPLDRAELGSLSKDMDKALQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred CCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 23445566555555543 233456677776643 246788999999998887
Q ss_pred Hhh
Q 010063 360 KDS 362 (519)
Q Consensus 360 ~~~ 362 (519)
++.
T Consensus 235 ~e~ 237 (248)
T KOG4014|consen 235 EEL 237 (248)
T ss_pred HHH
Confidence 764
No 356
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.33 E-value=7 Score=36.43 Aligned_cols=104 Identities=10% Similarity=0.062 Sum_probs=77.2
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC---H-------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS---I-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (519)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (519)
..=|..++++++|..|.--|..+++++.+...... + ....+...+..||..+++.+-|+.+..+.+.+
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l-- 257 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL-- 257 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc--
Confidence 34466778889999999999999998766422111 1 12234557889999999999999999888875
Q ss_pred HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (519)
+|....-+..-|.++..+.+|.+|.+.+--+.-++-
T Consensus 258 ------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymyw 293 (569)
T PF15015_consen 258 ------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYW 293 (569)
T ss_pred ------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677778889999999999887766655553
No 357
>PRK10941 hypothetical protein; Provisional
Probab=89.32 E-value=8.1 Score=34.40 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
+.+.-..+...++++.|+.+.+..+.+ .|+.+.-+...|.+|.++|.+..|..-++..++.. ++.|
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l----------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----P~dp 249 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF----------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----PEDP 249 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----CCch
Confidence 444446779999999999999999998 77777888899999999999999999998887765 4445
Q ss_pred HHHH
Q 010063 201 LLDA 204 (519)
Q Consensus 201 ~~~~ 204 (519)
....
T Consensus 250 ~a~~ 253 (269)
T PRK10941 250 ISEM 253 (269)
T ss_pred hHHH
Confidence 4433
No 358
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.97 E-value=16 Score=32.59 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (519)
....++..++..+...|+++.+...+++.+.. +|..-..+..+-..|...|+...|+..|++.-+...+-.|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 34678889999999999999999999999886 6666778888999999999999999999998886555544
Q ss_pred CCC
Q 010063 323 END 325 (519)
Q Consensus 323 ~~~ 325 (519)
.+.
T Consensus 223 i~P 225 (280)
T COG3629 223 IDP 225 (280)
T ss_pred CCc
Confidence 443
No 359
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.70 E-value=9.4 Score=34.03 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 238 (519)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 238 (519)
.....++..++..+...|+++.+...+++.+... |..-..+..+-..|...|+...|+..|++.-.......|
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELD-------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 3456788899999999999999999999887654 555556888899999999999999999998886555455
Q ss_pred CCCH
Q 010063 239 KTSI 242 (519)
Q Consensus 239 ~~~~ 242 (519)
.+..
T Consensus 223 i~P~ 226 (280)
T COG3629 223 IDPA 226 (280)
T ss_pred CCcc
Confidence 5433
No 360
>PRK10941 hypothetical protein; Provisional
Probab=88.67 E-value=5.4 Score=35.53 Aligned_cols=80 Identities=13% Similarity=0.009 Sum_probs=61.7
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (519)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (519)
...+...+.++-.+|.+.++++.|+.+.+..+.+. +++ ..-+...|.+|.+.|.+..|..-++.-++..
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-----P~d---p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~--- 245 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFD-----PED---PYEIRDRGLIYAQLDCEHVALSDLSYFVEQC--- 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC---
Confidence 34556778899999999999999999999988753 333 3456678999999999999999999888743
Q ss_pred cCCCCcchhHHHH
Q 010063 449 VGPDDQSISFPML 461 (519)
Q Consensus 449 ~~~~~~~~~~~~~ 461 (519)
|+.|.......
T Consensus 246 --P~dp~a~~ik~ 256 (269)
T PRK10941 246 --PEDPISEMIRA 256 (269)
T ss_pred --CCchhHHHHHH
Confidence 55555544333
No 361
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.44 E-value=23 Score=33.61 Aligned_cols=140 Identities=17% Similarity=0.076 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHhhhhhcC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY--VYIGDLKFVQSLLDMMSGIVDSLK 196 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~ 196 (519)
..-...+..+++.++|..|.+.++..... + +.... ...+..+..+| ....++++|.+.++........+
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r----l---~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l- 202 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR----L---PGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL- 202 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----C---Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-
Confidence 34667888999999999999999998764 1 11111 34455555544 66888999999998866542110
Q ss_pred CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (519)
......+..+.. .-++...+.....................+..-|.--...|+|+.|...+-+++++.-
T Consensus 203 ---~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~ 272 (379)
T PF09670_consen 203 ---NQEREGLKELVE-------VLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLA 272 (379)
T ss_pred ---HhHHHHHHHHHH-------HHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 000111111111 1122222222222111100000122333333344444568999999999999998754
Q ss_pred H
Q 010063 277 L 277 (519)
Q Consensus 277 ~ 277 (519)
+
T Consensus 273 Q 273 (379)
T PF09670_consen 273 Q 273 (379)
T ss_pred H
Confidence 3
No 362
>PF12854 PPR_1: PPR repeat
Probab=88.25 E-value=1.2 Score=24.87 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010063 330 MAMCSLAHAKCANGNAEEAVELYKKA 355 (519)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~a 355 (519)
.+|+.+...+.+.|+.++|.+++++.
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 48899999999999999999998863
No 363
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=88.17 E-value=20 Score=40.07 Aligned_cols=155 Identities=15% Similarity=0.077 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCC-------------------
Q 010063 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR------------------- 388 (519)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------- 388 (519)
.++....+|.++...|++.+|+..|.+|+...+. ..|+-+.+.++..++.+..-.+.
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~----~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~ 316 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS----SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS 316 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh----cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence 3456677899999999999999999999999887 46777777777666554432110
Q ss_pred -------------------------------------hHHHHHHHHHHHHHHHHhh---CCCChh--HHHHHHHHHHHHH
Q 010063 389 -------------------------------------GQEGRELLEECLLITEKYK---GKEHPS--FVTHLLNLAASYS 426 (519)
Q Consensus 389 -------------------------------------~~~A~~~~~~al~~~~~~~---~~~~~~--~~~~~~~la~~~~ 426 (519)
...-.+.+++++..+.+.. .+..|. ..++...++.++.
T Consensus 317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence 1111234555555555442 111232 3456666777776
Q ss_pred hcc--------------------CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 427 RSK--------------------NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 427 ~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
... ...++.+...+++.+.... -...+....+..+|.+|...|-..++.-+.+.++..
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 666 6778888888888765432 234566788999999999999999988888888776
Q ss_pred HH
Q 010063 487 RE 488 (519)
Q Consensus 487 ~~ 488 (519)
.-
T Consensus 475 ~~ 476 (1185)
T PF08626_consen 475 LV 476 (1185)
T ss_pred hc
Confidence 63
No 364
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=87.81 E-value=1.3 Score=41.52 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 010063 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWF 512 (519)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (519)
-+++-+.++++|+.||++.......|-+|..+|+++.-+++++-|+++.++.+.|-+|-+ +.++...+..+.
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT--~ssllsFaelFS 390 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMT--ASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCccc--HHHHHHHHHHHH
Confidence 467778899999999998766667788999999999999999999999999999888866 455556666553
No 365
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.54 E-value=6.4 Score=26.87 Aligned_cols=43 Identities=28% Similarity=0.250 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchH
Q 010063 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (519)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (519)
+..+...|.-+-..|++.+|+.+|+++++.+.+.....||.+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 3445566777788999999999999999988776444455444
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.51 E-value=17 Score=32.34 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
...+...+..|...|.+.+|+.+.++++.+ +|..-..+..+-.++...|+--.+.+.|++.-+..+.-+|-+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 344556688899999999999999999987 666677888888999999999999999998887776666555
Q ss_pred Chh
Q 010063 325 DGR 327 (519)
Q Consensus 325 ~~~ 327 (519)
..+
T Consensus 351 vdd 353 (361)
T COG3947 351 VDD 353 (361)
T ss_pred cch
Confidence 443
No 367
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=87.44 E-value=25 Score=39.23 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---CC-------------------
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---NG------------------- 343 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g------------------- 343 (519)
.......+|..+...|++.+|+..|.+|+...+.. .++...+.++-.++.+..- .|
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 34566778999999999999999999999998875 2444455555544432211 00
Q ss_pred ----------------------------------CHHHHHHHHHHHHHHHHhhcc--C-CCCchHHHHHHHHHHHHHHHc
Q 010063 344 ----------------------------------NAEEAVELYKKALRVIKDSNY--M-SLDDSIMENMRIDLAELLHIV 386 (519)
Q Consensus 344 ----------------------------------~~~~A~~~~~~al~~~~~~~~--~-~~~~~~~~~~~~~la~~~~~~ 386 (519)
-.+.-.+.+++++..+.+... . .........+...++..+...
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 011122334444444443210 0 011223345556777777777
Q ss_pred C--------------------ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063 387 G--------------------RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 387 g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
. .-.++.+...+++....... ...+....+..+|.+|...|-..++.-+++.++...
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 7 67778888888877654322 345667889999999999998888777777666544
No 368
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.06 E-value=7.6 Score=26.52 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI 159 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 159 (519)
...+...|..+-..|++.+|+.+|+++++.+.+.....++.+
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 445677888889999999999999999999888765444444
No 369
>PRK14707 hypothetical protein; Provisional
Probab=86.92 E-value=68 Score=37.32 Aligned_cols=313 Identities=9% Similarity=0.001 Sum_probs=163.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHH--HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010063 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL--LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL 244 (519)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 244 (519)
.+++++-..++|.++..+-..+..+...+..+. .....+ ..+++++...+++.+...+-.-+..+...+........
T Consensus 836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~-~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrq 914 (2710)
T PRK14707 836 HVATVLNAMSKWPDNAVCAAAAGAMAERLADEP-ELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRK 914 (2710)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHhcCh-hhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHh
Confidence 456677777788777766666666655543332 222222 24566666677777666666666666655422111111
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP--LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (519)
...-..+++++-...++.++-.+-.-+..+...... .+..... -..+++++...++|.+...+-.-+..+.....
T Consensus 915 al~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~--d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~- 991 (2710)
T PRK14707 915 ALSAHRVATALNALSKWPDIPVCATAASALAERLSD--DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV- 991 (2710)
T ss_pred hccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc--ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh-
Confidence 222335566666666666654444444444444331 2222222 23466677777777776665555555554432
Q ss_pred CCChhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH--HHHHHHHHHHHHcCChHHHHHHHHH
Q 010063 323 ENDGRV--GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME--NMRIDLAELLHIVGRGQEGRELLEE 398 (519)
Q Consensus 323 ~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~ 398 (519)
+++.. ...-..+++++....++.++-.+-.-+..+.... ..+ +... ..-..++.++....+|.+.-.+-.-
T Consensus 992 -~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rL---a~e-p~L~~amdaQ~lan~LNALSKWPde~~Cr~A 1066 (2710)
T PRK14707 992 -DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARL---SND-PGLCKALSSQGLTTVLNALCKWPEMPVCLAA 1066 (2710)
T ss_pred -ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHh---ccC-HhhhhhcchHHHHHHHHhhccCCCchhHHHH
Confidence 12221 1122345666666667765555555555554442 111 1111 1114567777777777765555444
Q ss_pred HHHHHHHhhCCCChhH--HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHH
Q 010063 399 CLLITEKYKGKEHPSF--VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476 (519)
Q Consensus 399 al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 476 (519)
+..+...+. .++.. ...-..++.++...-++.+.-.+-+-++.+...+.+..++........++.+.-...++...
T Consensus 1067 a~aLA~rL~--~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~ 1144 (2710)
T PRK14707 1067 ASALAERLS--DDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGT 1144 (2710)
T ss_pred HHHHHHHhh--ccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCc
Confidence 444444332 12221 11223456666666777777777777777777765544444444445666666666666554
Q ss_pred HHHHHHHHHHHHHh
Q 010063 477 EKLVLEALYIREIA 490 (519)
Q Consensus 477 ~~~~~~a~~~~~~~ 490 (519)
-.+-.-+..+...+
T Consensus 1145 ~~cr~Aa~~LA~RL 1158 (2710)
T PRK14707 1145 QACESAIDVLAATL 1158 (2710)
T ss_pred hHHHHHHHHHHHHh
Confidence 44444444444443
No 370
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.75 E-value=5.2 Score=42.43 Aligned_cols=111 Identities=16% Similarity=0.061 Sum_probs=70.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010063 337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT 416 (519)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 416 (519)
+.+...+.|+.|+..|++.-..+ |....-..+.+..|..+..+-.-..-.+.+.+|+..++...+ .+...-
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 553 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESF-------PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPL 553 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcC-------CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCch
Confidence 34555556666666666654432 222222345567777776554333333677778877777653 333344
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 010063 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461 (519)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 461 (519)
-|...|.+|.++|++++-+++|.-|++-+ +.||.......
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 593 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRD 593 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHH
Confidence 56677889999999999999999998854 56777655433
No 371
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.75 E-value=0.56 Score=43.80 Aligned_cols=72 Identities=24% Similarity=0.351 Sum_probs=63.0
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh
Q 010063 398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 469 (519)
Q Consensus 398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 469 (519)
+++-+.+.++|+.||++.......|-+|...|+++..+++++-|+++.++.+.|-.|.+...+...+.++..
T Consensus 320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 566777888999999988777778999999999999999999999999999999999888888887777654
No 372
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.47 E-value=21 Score=34.57 Aligned_cols=126 Identities=19% Similarity=0.139 Sum_probs=70.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 010063 215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 294 (519)
Q Consensus 215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 294 (519)
..|+++++.+..... ++.. .-| ..-...++..+..+|.++.|+...+.- ...+.|
T Consensus 273 ~~~d~~~v~~~i~~~-~ll~-----~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~----------------~~rFeL- 327 (443)
T PF04053_consen 273 LRGDFEEVLRMIAAS-NLLP-----NIP--KDQGQSIARFLEKKGYPELALQFVTDP----------------DHRFEL- 327 (443)
T ss_dssp HTT-HHH-----HHH-HTGG-----G----HHHHHHHHHHHHHTT-HHHHHHHSS-H----------------HHHHHH-
T ss_pred HcCChhhhhhhhhhh-hhcc-----cCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh----------------HHHhHH-
Confidence 457777766655311 1111 111 222456677778888887776654322 222333
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHH
Q 010063 295 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 374 (519)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 374 (519)
..+.|+.+.|.+..++. .....|..||.....+|+++-|+++|+++-+.
T Consensus 328 --Al~lg~L~~A~~~a~~~-------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~---------------- 376 (443)
T PF04053_consen 328 --ALQLGNLDIALEIAKEL-------------DDPEKWKQLGDEALRQGNIELAEECYQKAKDF---------------- 376 (443)
T ss_dssp --HHHCT-HHHHHHHCCCC-------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------------
T ss_pred --HHhcCCHHHHHHHHHhc-------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------------
Confidence 45788888887654332 23347889999999999999999999886443
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 010063 375 MRIDLAELLHIVGRGQEGRELLEE 398 (519)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~ 398 (519)
..|..+|...|+.+.=.++.+.
T Consensus 377 --~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 377 --SGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp --HHHHHHHHHCT-HHHHHHHHHH
T ss_pred --cccHHHHHHhCCHHHHHHHHHH
Confidence 4466777888886554444433
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.46 E-value=1.6 Score=26.21 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 461 LHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
..||.+|..+|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999985
No 374
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.12 E-value=32 Score=32.72 Aligned_cols=63 Identities=10% Similarity=-0.066 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHH--HHHHHccccHHHHHHHHHHHHHH
Q 010063 165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM--GSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
....+...+..++|..|...++.+... +++... ...+..+ |..++...++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345566678999999999999987764 222222 2334444 55567788999999999987664
No 375
>PF13041 PPR_2: PPR repeat family
Probab=86.11 E-value=4.5 Score=24.91 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
.+|+.+-..|.+.|++++|.++|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678888999999999999999999886
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.01 E-value=1.6 Score=26.12 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 010063 377 IDLAELLHIVGRGQEGRELLEECLL 401 (519)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~ 401 (519)
.++|..|...|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5799999999999999999999875
No 377
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.67 E-value=4.2 Score=37.03 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHH
Q 010063 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSL 184 (519)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 184 (519)
+....+..++..++..+..+++++|...|..|..++.+.+ +..+.+...+++..|..++..++.+...-.
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~--Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY--GEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456777899999999999999999999999999999887 677888899999999999998887766543
No 378
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.33 E-value=1.9 Score=40.50 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc
Q 010063 376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449 (519)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (519)
...|.+++.-.|||..|++.++..---....+..-.+-...+++.+|-+|..+++|.+|+..|...+-...+..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46678889999999999998765321111122223344567888999999999999999999999988766553
No 379
>PF12854 PPR_1: PPR repeat
Probab=85.28 E-value=2.4 Score=23.69 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (519)
...+|+.+...|.+.|+.++|.+++++.
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3678999999999999999999998763
No 380
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=84.98 E-value=2 Score=36.33 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=51.1
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh
Q 010063 127 SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (519)
Q Consensus 127 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (519)
.....|+.+.|.++|.+++++ .|+....|+.+|......|+++.|...|++.+++.
T Consensus 4 ~~~~~~D~~aaaely~qal~l----------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL----------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc----------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 346789999999999999998 88899999999999999999999999999988875
No 381
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=83.46 E-value=23 Score=29.02 Aligned_cols=150 Identities=13% Similarity=0.049 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 010063 310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKC-----ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 384 (519)
Q Consensus 310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~ 384 (519)
|+.|.++++.... ......+.+.+|..+. ..+++..|++.+..+-+. +. ..+-.++|.++.
T Consensus 51 F~~A~kv~K~nCd--en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~---------n~---~~aC~~~gLl~~ 116 (248)
T KOG4014|consen 51 FQAAVKVFKKNCD--ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA---------NI---PQACRYLGLLHW 116 (248)
T ss_pred HHHHHHHHHhccc--ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc---------CC---HHHHhhhhhhhc
Confidence 4444444444322 2223344555555443 245788888888877653 11 123355666655
Q ss_pred Hc-----CC--hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH------------------------hccCHHH
Q 010063 385 IV-----GR--GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS------------------------RSKNFVE 433 (519)
Q Consensus 385 ~~-----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~~ 433 (519)
.. ++ ..+|++++.++-++- ...+.+.|...|. -..+.++
T Consensus 117 ~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdk 186 (248)
T KOG4014|consen 117 NGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDK 186 (248)
T ss_pred cCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHH
Confidence 32 23 567888888775431 1122333333332 2345556
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHhcCC
Q 010063 434 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGK 493 (519)
Q Consensus 434 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~ 493 (519)
|.++--+|-++ ....+..++.+.|.. -.+-++|..+-.+|.++.+++...
T Consensus 187 a~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k~ 240 (248)
T KOG4014|consen 187 ALQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRKN 240 (248)
T ss_pred HHHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 66655555542 234556677777764 246789999999999999887543
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.86 E-value=22 Score=31.65 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (519)
.+...+..|...|.+.+|+++.++++.. ++.....+..+-.++...|+--.+...|++.-...+..+|-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl----------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL----------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc----------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 4455677889999999999999999887 344445567788899999999999999998877776666654
Q ss_pred ChhH
Q 010063 411 HPSF 414 (519)
Q Consensus 411 ~~~~ 414 (519)
..+.
T Consensus 351 vdds 354 (361)
T COG3947 351 VDDS 354 (361)
T ss_pred cchh
Confidence 4433
No 383
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.51 E-value=15 Score=34.56 Aligned_cols=116 Identities=17% Similarity=0.015 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCChhHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHh
Q 010063 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPSFVTHLLNLAASYSRSKN---FVEAERLLRICLDIMTKT 448 (519)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~ 448 (519)
.+...|++......|++|+.++-.|-+.+..... +...+++..-..+.+||+.+.+ .+.|..-+..+-.-+...
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3455666777777788887777666554432210 0111222333445677777665 345555555554444444
Q ss_pred c-----------CCCCcchh---HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010063 449 V-----------GPDDQSIS---FPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (519)
Q Consensus 449 ~-----------~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 490 (519)
+ |+..|+.+ ..+..-|.+.+.+|+-++|.++++.+.....+.
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 3 34445543 333445889999999999999999998877654
No 384
>PF13041 PPR_2: PPR repeat family
Probab=82.46 E-value=7.2 Score=23.96 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (519)
..+++.+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 456788889999999999999999998754
No 385
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.34 E-value=31 Score=30.59 Aligned_cols=109 Identities=12% Similarity=0.044 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHH---HHHHHHHHhcCChHHH-HHHHHHH
Q 010063 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAIL---DIIALGYVYIGDLKFV-QSLLDMM 188 (519)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A-~~~~~~~ 188 (519)
...+....+++.+..+++.++...|.++.-..++...+. +.+... -+++......+.-+.. ..+.+.+
T Consensus 41 ~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka--------~~ad~~~~~anl~~ll~e~~~~eper~~~v~ra 112 (312)
T KOG3024|consen 41 AHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKA--------EVADSLLKVANLAELLGEADPSEPERKTFVRRA 112 (312)
T ss_pred hhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH--------HhhHhHHHHHHHHHHHhhcCCCccHHHHHHHHH
Confidence 334455667777888888888888877777776665442 112222 2334444333333333 3455667
Q ss_pred HhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHH
Q 010063 189 SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRV 229 (519)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 229 (519)
+++....+.........+..+|..++..+++.+|..+|-.+
T Consensus 113 ikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 113 IKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence 77776654433334455788999999999999999888643
No 386
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.24 E-value=14 Score=25.44 Aligned_cols=35 Identities=6% Similarity=-0.034 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQ 151 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~ 151 (519)
....+...|...=..|+|++|+.+|..+++.+...
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 34457778888899999999999999999987764
No 387
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.95 E-value=15 Score=34.49 Aligned_cols=117 Identities=13% Similarity=-0.011 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc--cCCCCchHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHH
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMSLDDSIMENMRIDLAELLHIVGR---GQEGRELLEECLLITEK 405 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 405 (519)
.+...|...+....|++|+.++-.|-+.+.... .+.. -..++..-..+.+||+...+ .+.|..-+..+-+-+..
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~-VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLEL-VDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHh-hcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 345556666777777777777776666554320 0000 01112233556778887765 34566555555544444
Q ss_pred hhC-----------CCChhHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063 406 YKG-----------KEHPSFV---THLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (519)
Q Consensus 406 ~~~-----------~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (519)
.+| +..|..+ ..+...|.+.+.+|+-++|.++++.+.....+.
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 433 3445443 344566889999999999999999998876654
No 388
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.87 E-value=14 Score=25.44 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN 153 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (519)
...++..|..+-..|+|++|+.+|.++++.+.....
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk 41 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLK 41 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 345777888889999999999999999999877653
No 389
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=81.77 E-value=29 Score=28.84 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHH
Q 010063 142 QANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEK 221 (519)
Q Consensus 142 ~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (519)
++++.+.++.. -+...+......|++++|...++++.+....+...-..... ++.-|.+-.....|.+
T Consensus 20 EE~l~lsRei~-----------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe-l~~ag~~~~a~QEyvE 87 (204)
T COG2178 20 EEALKLSREIV-----------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE-LYFAGFVTTALQEYVE 87 (204)
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhhcchHHHHHH
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----------HhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 222 SMLVYQRVINVLESRYGKTSILLVTSLLGMAKV----------LGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (519)
Q Consensus 222 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~----------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (519)
|..++.-...-.......-..........+|.+ ....|++++|...++-.-.++.....-+.|.
T Consensus 88 A~~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~ 161 (204)
T COG2178 88 ATLLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPK 161 (204)
T ss_pred HHHHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCch
No 390
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=81.71 E-value=2.8 Score=22.33 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
+|+.+-..|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788999999999999999998754
No 391
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=81.57 E-value=36 Score=29.84 Aligned_cols=183 Identities=10% Similarity=0.022 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDE 199 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (519)
++..+...-..++|++.+.+..++++... + ..-...-.+.++.+|- ..|....+...+.....-....+ .
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~-----~--~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~--~ 74 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD-----S--EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRG--N 74 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC-----C--ccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccC--c
Confidence 45566777788999999999988766311 0 1122223345555553 35666777776655322211111 1
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhhc-----CC-----HHHHHH
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS---ILLVTSLLGMAKVLGSI-----GR-----AKKAVE 266 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~ 266 (519)
+.. ..+..-|. ..=-++=.......+.+....+-+.. ...+-.+...|..|... |+ .++|..
T Consensus 75 ~~~----~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 75 EDH----VASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred hHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 111 11111111 11122344556666666655433321 12222333344444332 22 458899
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHH
Q 010063 267 IYHRVITILELNRGTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 317 (519)
.|++|.++......+.+|.......|.+..|+ -+++.++|..+.+++++-.
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999887667777776666666665555 4699999998888887754
No 392
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=80.24 E-value=2.9 Score=35.45 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=49.3
Q ss_pred HHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
.....||.+.|.+.+.+++.+. |.+...|+.+|....+.|+++.|...|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~la-------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3456789999999999999887 788888999999999999999999999999887
No 393
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=80.18 E-value=53 Score=30.87 Aligned_cols=144 Identities=13% Similarity=0.102 Sum_probs=100.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (519)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (519)
..++...++.+|...-+..+....- .....-+--.+.+++.+..+|-..|+...-...+...+... .+..+....+..
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~-~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA-tLrhd~e~qavL 211 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISI-QNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA-TLRHDEEGQAVL 211 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh-hhcCcchhHHHH
Confidence 4557778899998888776554211 00011133345677888888888898777666666555443 335555666677
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (519)
.+.+-..|...+.|+.|.....++.-- . ...+...++.++.+|.+..-+++|..|.+++-+|+...
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~p--e--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYP--E--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCc--c--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 788888999999999998877765311 0 11233678889999999999999999999999998764
No 394
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.16 E-value=68 Score=32.17 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
-.++.+-|.-.++..+|..++++|...+...... ..+...+.....++.||....+.+.|.+++++|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 3456667778888999999999999988765331 223355788889999999999999999999999775
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (519)
+|........+-.+....|+-++|+............
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 3444555566667777889999999988887766543
No 395
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=79.86 E-value=3.6 Score=21.87 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILK 315 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (519)
+|+.+-..|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788999999999999999998764
No 396
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=79.67 E-value=49 Score=30.22 Aligned_cols=93 Identities=15% Similarity=0.249 Sum_probs=65.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063 338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417 (519)
Q Consensus 338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 417 (519)
+..+.++.++|++++++..+..... ..+..+..+...+|+++...|+..++.+.+.+.-.......+ -.+.+-..
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~-v~~~Vh~~ 158 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDG-VTSNVHSS 158 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccC-CChhhhhh
Confidence 3445669999999999999887763 333456667788999999999999999999988777665532 23334445
Q ss_pred HHHHHHH-HHhccCHHHHH
Q 010063 418 LLNLAAS-YSRSKNFVEAE 435 (519)
Q Consensus 418 ~~~la~~-~~~~g~~~~A~ 435 (519)
++.++.- |...|++....
T Consensus 159 fY~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASYY 177 (380)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 5555554 44566665543
No 397
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=79.53 E-value=8 Score=34.41 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=49.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
+.|.-....|+.++|..+|+.|+.+ .|....++..+|......++.-+|-.+|-+|+.+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3444556689999999999999987 5666788889999998889999999999999875
No 398
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.21 E-value=6.5 Score=35.88 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHH
Q 010063 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434 (519)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 434 (519)
-+...|+-...++++++|...|..|..+..+.+|..+.....+++..|..++..++.+..
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~ 102 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQ 102 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678889999999999999999999999999999999999999999988887665543
No 399
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=78.97 E-value=44 Score=29.29 Aligned_cols=185 Identities=12% Similarity=0.004 Sum_probs=104.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDD 369 (519)
Q Consensus 291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (519)
..++.+....++|++...+.++++++.. + ..-...-.+.+..+|-. .|....+...+.. ++.-... .+ ..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~--~~-~~ 75 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEES--RG-NE 75 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhc--cC-ch
Confidence 4577888889999999999999877421 0 01111223334444432 4555666666554 2221110 01 11
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHHHh-----ccC-----HHHHHH
Q 010063 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH---PSFVTHLLNLAASYSR-----SKN-----FVEAER 436 (519)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~-----~g~-----~~~A~~ 436 (519)
... .+..-|.. .=-++=.......+.+....+-+.. ......+-..|..|.- .|+ .++|..
T Consensus 76 ~~~-----~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 76 DHV-----ASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred HHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 111 11111111 0012334455666666655433321 1122223334444432 222 458999
Q ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHh
Q 010063 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIA 490 (519)
Q Consensus 437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~ 490 (519)
.|++|.++....+.|.||-......+.+..|+. +++.++|....+++++-.-..
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ 204 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAE 204 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999999998887889999888888888777765 699999998888877655433
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.84 E-value=28 Score=26.88 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 010063 387 GRGQEGRELLEECLLITEKY-KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 465 (519)
Q Consensus 387 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 465 (519)
|.-..-..++++++...... .-.+++.....+...+... + .+.+.|+.+.. +..| ...+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~----~--~~~~if~~l~~---~~IG---~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS----S--DPREIFKFLYS---KGIG---TKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB----S--HHHHHHHHHHH---HTTS---TTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc----c--CHHHHHHHHHH---cCcc---HHHHHHHHHHHH
Confidence 45566677888888877432 1124555556665555422 2 77777776554 2222 345667788899
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 010063 466 TLYHLNRDKEAEKLVLEAL 484 (519)
Q Consensus 466 ~~~~~g~~~~A~~~~~~a~ 484 (519)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998864
No 401
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.34 E-value=22 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=26.9
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
+|....+.+.+|..+...|++++|++.+-+++.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566678899999999999999999998887776
No 402
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.79 E-value=77 Score=31.39 Aligned_cols=175 Identities=15% Similarity=0.112 Sum_probs=105.8
Q ss_pred cccHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC---------
Q 010063 216 LENYEKSMLVYQRVINVLESR----YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE--------- 282 (519)
Q Consensus 216 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------- 282 (519)
...|++|...|.-+....... .-..+|..+.++..++.+...+|+.+.|....++++-.+.....+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 456778877777766653211 1123567788999999999999999999999999998776654221
Q ss_pred -------ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 010063 283 -------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKK 354 (519)
Q Consensus 283 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (519)
+.....+++..-..+...|-+..|.++.+-.+.+- +. +|.- +...+-....+..+|.=-++.++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLd-----p~eDPl~--~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLD-----PSEDPLG--ILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-----CcCCchh--HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11222344444556677899999999988877751 11 2322 222233333455666666665554
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH
Q 010063 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---GQEGRELLEECLLIT 403 (519)
Q Consensus 355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 403 (519)
.-.. .+. . ..|.+... ..+|..|..... -..|...+.+|+...
T Consensus 404 ~e~~-n~l---~-~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 404 PENM-NKL---S-QLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHhh-ccH---h-hcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 4222 110 1 11111211 456777777665 567778888887654
No 403
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=77.28 E-value=6.2 Score=21.50 Aligned_cols=27 Identities=37% Similarity=0.644 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
+|+.+-..|.+.|++++|.++|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788889999999999999998765
No 404
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=76.82 E-value=32 Score=29.70 Aligned_cols=110 Identities=10% Similarity=0.063 Sum_probs=64.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhc-C-CCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINA-G-NKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (519)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (519)
....+..|+++.|+++..-+++.-....+. . ....-.++-....+......|..-+. .++.....+.....-.+...
T Consensus 90 mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vr 168 (230)
T PHA02537 90 MVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVR 168 (230)
T ss_pred eeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHH
Confidence 345688999999999999999862111000 0 00111222333444455556653222 13444445544444455556
Q ss_pred HHHHHHHHHHHH---------ccccHHHHHHHHHHHHHHHHH
Q 010063 203 DAILLHMGSMYS---------TLENYEKSMLVYQRVINVLES 235 (519)
Q Consensus 203 ~~~~~~l~~~~~---------~~g~~~~A~~~~~~al~~~~~ 235 (519)
+..+-..|..+. ..++...|+.++++|+.+..+
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 776777787773 556888999999999988533
No 405
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=76.71 E-value=22 Score=24.55 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
+...|.-.-..|++++|+.+|.++++.+...
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3344555667899999999999999987764
No 406
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=76.54 E-value=22 Score=24.65 Aligned_cols=34 Identities=12% Similarity=-0.014 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (519)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (519)
.+.+.|..+-..|+.++|+.+|++++....+...
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 3444556666779999999999999998877544
No 407
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=76.04 E-value=21 Score=23.92 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN 153 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (519)
..+...|...-..|++++|+.+|.++++.+.....
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 34677788888899999999999999998877653
No 408
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.97 E-value=13 Score=35.33 Aligned_cols=126 Identities=10% Similarity=0.121 Sum_probs=68.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (519)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
.....+..|+.-.|-+-...++.. .+..+......+.++...|+|+.+...+..+..+... .+.
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~----------~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s---~~~--- 358 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRN----------QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT---TDS--- 358 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHh----------CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC---Cch---
Confidence 344455667766666555555443 3333444455677888999999998888766555421 111
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (519)
+...+-......|++++|.....-.+.- + -.+|.+.. .-+..-...|-+++|..++++.+.+
T Consensus 359 -~~~~~~r~~~~l~r~~~a~s~a~~~l~~--e---ie~~ei~~---iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 359 -TLRCRLRSLHGLARWREALSTAEMMLSN--E---IEDEEVLT---VAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred -HHHHHHHhhhchhhHHHHHHHHHHHhcc--c---cCChhhee---eecccHHHHhHHHHHHHHHHHHhcc
Confidence 2333444556677777777655544321 1 11222221 1223333455666666666666554
No 409
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=74.79 E-value=7.8 Score=21.08 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILK 315 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (519)
+++.+-..|.+.|++++|.++|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788889999999999999998764
No 410
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=73.30 E-value=11 Score=20.48 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
+|+.+...+.+.|+++.|..+++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888999999999999999998765
No 411
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=73.14 E-value=84 Score=29.63 Aligned_cols=141 Identities=7% Similarity=-0.018 Sum_probs=95.7
Q ss_pred HHHhcCChHHHHHHHHHHHhhhhhcCCC--chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010063 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDD--EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL 248 (519)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 248 (519)
..+...++.+|...-+..+.-....... +...+..|+.+..+|...|+...-...+..-+... .++.+....+...
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLi 212 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLI 212 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHH
Confidence 3455688999988776644322111111 12245667888888888888777666666555443 2344555566677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
+.+-..|...+.|+.|.....++.-- . ...+...+..++.+|.+..-+++|..|.+++-+|+...
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~p--e--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYP--E--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCc--c--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 77888999999999998877665311 0 01233567788899999999999999999999998753
No 412
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=72.67 E-value=15 Score=20.84 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 010063 459 PMLHLGITLYHLNRDKEAEKLVL 481 (519)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~ 481 (519)
.+..+|-.+..+|++++|+..++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45778999999999999999955
No 413
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=72.35 E-value=73 Score=28.55 Aligned_cols=62 Identities=21% Similarity=0.124 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 010063 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341 (519)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 341 (519)
|+.+|.+|..+ .|.....++.||.++...|+.-.|+-+|-+++-. ..|. ..+..||..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 67899999998 5777899999999999999999999999999853 3344 4577778777766
No 414
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=72.27 E-value=33 Score=33.32 Aligned_cols=97 Identities=9% Similarity=0.031 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhhhh
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG---DLKFVQSLLDMMSGIVD 193 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 193 (519)
.++.....+...+..+....|+..|.+++.. .+.....+.+.+.+++..+ +.-.|+.-...+++
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~----------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alr--- 439 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQY----------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALR--- 439 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhh----------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhcc---
Confidence 3344444444444455567788888887776 6667777888888877654 33334333333333
Q ss_pred hcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 010063 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVI 230 (519)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 230 (519)
.+|....+++.|+.++...+++.+|+.....+.
T Consensus 440 ----ln~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 440 ----LNPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred ----CChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 337777789999999999999999998776443
No 415
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=71.94 E-value=45 Score=25.96 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhcCChH---HHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 160 EEVAILDIIALGYVYIGDLK---FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
....+.+++++++....+.+ +.+.+++...+ . ..+......++.|+..+++.++|+.++.+....++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~----~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-S----AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-h----cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34556778888887766554 45556666554 1 222334456788999999999999999999887775
No 416
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.71 E-value=78 Score=28.22 Aligned_cols=136 Identities=15% Similarity=0.093 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH-----HHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-----LLVTSLLGM-AKVLGSIGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~ 277 (519)
..+-.-+....-..||..|+...+++++........+.+ ..-..+..+ ..++.++|++.+...+.-+-.+.-++
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 345566777777889999999999999876332111111 222222222 35677889999988886665544322
Q ss_pred hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-----HHHHCCCHHHHHHHH
Q 010063 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH-----AKCANGNAEEAVELY 352 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-----~~~~~g~~~~A~~~~ 352 (519)
. + +.++-.-..+|.+.|++....+.-..-+.. +++.... -|..++. ++.=.|.+++|+++.
T Consensus 116 l----P---pkIleLCILLysKv~Ep~amlev~~~WL~~------p~Nq~lp-~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 116 L----P---PKILELCILLYSKVQEPAAMLEVASAWLQD------PSNQSLP-EYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred C----C---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC------cccCCch-hhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 2 1 334444456678889988877766655542 1222221 1444444 445589999999887
Q ss_pred H
Q 010063 353 K 353 (519)
Q Consensus 353 ~ 353 (519)
.
T Consensus 182 ~ 182 (309)
T PF07163_consen 182 V 182 (309)
T ss_pred h
Confidence 4
No 417
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=70.49 E-value=86 Score=28.59 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=64.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (519)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
.....++..+..+-++....++++ +++.+.++..++.-- .--..+|+++++++++..+.
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeI----------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~--------- 248 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEI----------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET--------- 248 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhc----------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH---------
Confidence 334456677777778888888887 777777777666532 22355777777777665422
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (519)
.++-.......|...+|.. ..|......+-..++.|-.++|+..+|.+.++...+
T Consensus 249 --~yr~sqq~qh~~~~~da~~-------------rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 249 --IYRQSQQCQHQSPQHEAQL-------------RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred --HHhhHHHHhhhccchhhhh-------------hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 1111111122222222211 112233344455677888888888888887776544
No 418
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=70.46 E-value=31 Score=23.57 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (519)
...++..|...-..|++++|+.+|.++++.+....
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34477788888899999999999999999887765
No 419
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.97 E-value=1.7e+02 Score=31.91 Aligned_cols=185 Identities=13% Similarity=0.052 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH----------HHh--------cCCC--ChhH-HHHHHHHHHHHHHCCCHH
Q 010063 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIY----------TKV--------YGEN--DGRV-GMAMCSLAHAKCANGNAE 346 (519)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------~~~--------~~~~--~~~~-~~~~~~la~~~~~~g~~~ 346 (519)
.....+|.+|...|+..+|+..|.+|..-. ... -|.. .+.. ..-|...-+++..-+-.+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 344568888999999999999999986521 010 0111 1111 233444455566667777
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 010063 347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426 (519)
Q Consensus 347 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 426 (519)
++.++..+|++. .+++.+..+..+.++-+-+...|.+-+|...+-+- ++......++..+-.+++
T Consensus 1001 ~vcQlA~~AIe~------l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---------pdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 1001 EVCQLAVKAIEN------LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---------PDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHHh------CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---------CcHHHHHHHHHHHHHHHH
Confidence 777777777765 46677777777788888888888888887655431 233334467778888888
Q ss_pred hccCHHHHHH-----HHHHHHH-HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH-HHHHHHHH
Q 010063 427 RSKNFVEAER-----LLRICLD-IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL-VLEALYIR 487 (519)
Q Consensus 427 ~~g~~~~A~~-----~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~a~~~~ 487 (519)
+.|+.+.=.+ +-++... +.++.........-..|..|--.+...+++.+|-.+ |+.+..+.
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 8887654221 1122222 222211111112222344444556678888877654 56666554
No 420
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.87 E-value=20 Score=34.20 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=71.9
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHH
Q 010063 298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377 (519)
Q Consensus 298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 377 (519)
+..|+.-.|-.-...++..+ +..|.. ....+.+....|+|+.|...+..+-.+... .+ .+..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-----~~~p~~---i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s------~~----~~~~ 361 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-----QQDPVL---IQLRSVIFSHLGYYEQAYQDISDVEKIIGT------TD----STLR 361 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-----CCCchh---hHHHHHHHHHhhhHHHHHHHhhchhhhhcC------Cc----hHHH
Confidence 34677777776666666532 233433 344678888999999998888776665322 11 1223
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
.+-+.....|++++|....+-.+.- ++ +.|++ ...-+......|-+++|..++++.+.+
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~--ei---e~~ei---~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSN--EI---EDEEV---LTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhcc--cc---CChhh---eeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 3556667788888888776554431 11 22322 222233344566778888888777664
No 421
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=69.24 E-value=15 Score=19.83 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010063 288 LPLFSLGSLFIKEGKAVDAESVFSRILK 315 (519)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (519)
.+++.+...+.+.|+++.|..+++...+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3577888999999999999999988765
No 422
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.18 E-value=1.3e+02 Score=30.01 Aligned_cols=179 Identities=15% Similarity=0.076 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHh----cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------
Q 010063 300 EGKAVDAESVFSRILKIYTKV----YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS------------- 362 (519)
Q Consensus 300 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------- 362 (519)
...|++|...|.-+.....-. .-..+|....++..++.+...+|+.+-|..+.++++=.+...
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 445778888887777654321 112356777889999999999999999999999998766553
Q ss_pred -ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063 363 -NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (519)
Q Consensus 363 -~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (519)
.+..+.+....-+++..-..+.+.|-+..|.++.+-.+.+.. ..+|.- +.+.+-....+..+|.=-++.++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp----~eDPl~--~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDP----SEDPLG--ILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----cCCchh--HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 112222233333444555666788999999998887776521 113322 2222222233445555555544443
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHH
Q 010063 442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNR---DKEAEKLVLEALYIRE 488 (519)
Q Consensus 442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 488 (519)
-.. .+. ..-|.... -..+|..|..... -+.|...+.+|+....
T Consensus 405 e~~-n~l--~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 405 ENM-NKL--SQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred Hhh-ccH--hhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 221 111 11233332 2356666666555 5678888888887654
No 423
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.60 E-value=93 Score=28.28 Aligned_cols=110 Identities=14% Similarity=0.069 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010063 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (519)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (519)
.+.....||.+|.+.++|..|-..+.-. .. ..+....+.......+..+|++|...++..+|..+..++--.....
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~--~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVGI-PL--DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcc-Cc--ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-
Confidence 5667888999999999999987766432 11 0001112334455677889999999999999999988875443322
Q ss_pred CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (519)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (519)
.+..-....-...|+++-..+++-+|...|-+..
T Consensus 178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222333345677777788877766665443
No 424
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=68.31 E-value=36 Score=23.35 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (519)
....++..|...-..|++++|+.+|.++++.+....
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 334466777778889999999999999999987765
No 425
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.84 E-value=32 Score=34.04 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=37.8
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
+..+.|+++.|.++..++-. ..-+..||......|++..|.+++.++.+.
T Consensus 646 lal~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 44567888888777665522 245678999999999999999999988653
No 426
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=67.55 E-value=1.4e+02 Score=29.74 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 287 VLPLFSLGSLFIK--EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 287 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
..++.+||.+-.- ...-..++.+|.+++...+..++..| ..-|..+|..+++.+++.+|+..+-++-.....-
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIRKY 351 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTS
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455555554332 23346779999999999998875433 2356778999999999999999999988876653
No 427
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.87 E-value=1e+02 Score=28.06 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (519)
..+.+...||.+|...++|..|-..+.-. ..-......+.......+..+|.+|...++..+|..+..++--....
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~--- 176 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE--- 176 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc---
Confidence 45667788999999999999988766432 11000000112234567888999999999999999998887544332
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (519)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (519)
..++..........|+++-..+++-+|-..|.+.
T Consensus 177 -~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 177 -SSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333334455677777788887776666544
No 428
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=66.84 E-value=12 Score=31.00 Aligned_cols=49 Identities=22% Similarity=0.053 Sum_probs=40.3
Q ss_pred CCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcc
Q 010063 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 498 (519)
Q Consensus 450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 498 (519)
+...|....++.++..-|..+|+++.|....+++++-..+..|.+||++
T Consensus 133 ~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 133 GYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp -TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 3456778889999999999999999999999999999999999988753
No 429
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=66.65 E-value=36 Score=22.75 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
.+...|.-.-..|++++|+.+|.++++.+...
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34455666677899999999999999886553
No 430
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=66.53 E-value=22 Score=20.21 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHH
Q 010063 416 THLLNLAASYSRSKNFVEAERLLR 439 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~ 439 (519)
+.+..+|-.+..+|++++|+..++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 346678999999999999999954
No 431
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.07 E-value=2.1e+02 Score=31.37 Aligned_cols=184 Identities=12% Similarity=0.063 Sum_probs=105.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHH----------H--------hcCCC-C-hhh-HHHHHHHHHHHHhCCCHHH
Q 010063 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILE----------L--------NRGTE-S-ADL-VLPLFSLGSLFIKEGKAVD 305 (519)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------~--------~~~~~-~-~~~-~~~~~~la~~~~~~g~~~~ 305 (519)
....+|.+|...|+..+|+..|.+|..-.- . ..|+. . +.. ...|...-+++...+-.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 345678889999999999999998875321 1 00111 1 111 2233334455556666666
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 010063 306 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385 (519)
Q Consensus 306 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (519)
+.++..+|++. .+++.|..+....++=.-+...|.+-+|...+-+ .++....-.++..+..++..
T Consensus 1002 vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-----------npdserrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 1002 VCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-----------NPDSERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-----------CCcHHHHHHHHHHHHHHHHh
Confidence 66666666653 3556777777777777777888888777654432 35555556677888888888
Q ss_pred cCChHHHHH-----HHHHHHH-HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHH
Q 010063 386 VGRGQEGRE-----LLEECLL-ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE-RLLRICLDIM 445 (519)
Q Consensus 386 ~g~~~~A~~-----~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~ 445 (519)
.|+++.-.+ +-++... +.+.............|..|=..+...+++.+|- -+|+.+..+.
T Consensus 1067 cg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1067 CGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred ccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 887653221 1122222 1111111111122233444444567788887765 4566666653
No 432
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=65.75 E-value=61 Score=28.76 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=53.3
Q ss_pred HHHHHHHHH-HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh
Q 010063 117 QLLELFNEV-KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (519)
Q Consensus 117 ~~~~l~~~~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (519)
.+..+.... ..+...++++.|....++.+.+ .|+.+.-....|.+|.+.|.+.-|++-++...+..
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l----------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDL----------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh----------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 334444444 4568889999999999999988 77777778889999999999999999998876665
No 433
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=65.53 E-value=43 Score=23.26 Aligned_cols=55 Identities=13% Similarity=0.032 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010063 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315 (519)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (519)
+.|..+-..|+.++|+.+|++++....+...-..+ .......++.|..+-++...
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~-----------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLRELEEGIAVPVP-----------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC-----------cccccHHHHHHHHHHHHHHH
Confidence 34445556799999999999999988775432221 12223346666666555544
No 434
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=65.43 E-value=1.3e+02 Score=28.92 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH--------HHH--HHHHHHHHHHccccHHHHHHHHHHH
Q 010063 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL--------LDA--ILLHMGSMYSTLENYEKSMLVYQRV 229 (519)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~l~~~~~~~g~~~~A~~~~~~a 229 (519)
..+....-.|...++.+++++|++.+.......+.. ..+. ... .-...+.++...|++.++...+++.
T Consensus 77 ~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~--~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 77 KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGT--ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc--ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 445555667788889999999999887665543221 1111 111 1234678899999999999999988
Q ss_pred HHHH
Q 010063 230 INVL 233 (519)
Q Consensus 230 l~~~ 233 (519)
+...
T Consensus 155 ~~~l 158 (549)
T PF07079_consen 155 IERL 158 (549)
T ss_pred HHHH
Confidence 7654
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.06 E-value=1.7e+02 Score=31.26 Aligned_cols=185 Identities=14% Similarity=0.019 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhhc--c
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA--EEAVELYKKALRVIKDSN--Y 364 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~--~ 364 (519)
-+..|+.+|...|++++|++++.+..+-.. ..+......+-.+-..+...+.. +-..++-.-.++...... -
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~----~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~I 581 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS----DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQI 581 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc----ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheee
Confidence 466789999999999999999998876321 01122222233333333333333 333333332222111100 0
Q ss_pred CCCCch-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--------ccCHHHHH
Q 010063 365 MSLDDS-IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--------SKNFVEAE 435 (519)
Q Consensus 365 ~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~ 435 (519)
+..++. .....-.....-|......+-++.+++.++...+.. .+ .....++..|.+ .++-+++.
T Consensus 582 ft~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~----~~---~lht~ll~ly~e~v~~~~~~~~kg~e~~ 654 (877)
T KOG2063|consen 582 FTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT----ST---LLHTVLLKLYLEKVLEQASTDGKGEEAP 654 (877)
T ss_pred eeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc----ch---HHHHHHHHHHHHHHhhccCchhccccch
Confidence 000011 111110112223456677788888998887754321 11 122222222221 23344565
Q ss_pred HH--HHHHHHHHHHhcCCCCcc-------hhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 436 RL--LRICLDIMTKTVGPDDQS-------ISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 436 ~~--~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
+. .++..... .....-+|. ....+...+.++.++|+.++|+..|-.-+.
T Consensus 655 E~~~rekl~~~l-~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 655 ETTVREKLLDFL-ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhHHHHHHHHh-hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 55 33333322 222222222 134566778888899999999998876655
No 436
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=64.56 E-value=2.1e+02 Score=30.98 Aligned_cols=100 Identities=8% Similarity=-0.052 Sum_probs=59.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (519)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (519)
.++.....|+.|+..|++.... -++..+--++.+..|.....+-.-..-.+.+.+|+...+.+.... ...--
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 554 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRES-------FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGV-GAPLE 554 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhc-------CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-CCchH
Confidence 4455566666666666665443 444555566778888777553221111133444444333332221 11112
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVL 233 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (519)
|...|.+|...|++++-++.+.-|++.+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 6677788999999999999999998875
No 437
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.19 E-value=1.2e+02 Score=27.79 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=31.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (519)
Q Consensus 257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (519)
+..+..+-++....++++ ++..+.+|..|+.-- ..-..+|+++++++++..+
T Consensus 196 RERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e 247 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE 247 (556)
T ss_pred HhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH
Confidence 334444555555666666 456666766666432 2346778888888887643
No 438
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=63.37 E-value=1.6e+02 Score=29.21 Aligned_cols=57 Identities=25% Similarity=0.287 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 388 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
.-..++++|.+|+...+..+++.|. .-|..+|..|.+.+++.+|+..+-++-.....
T Consensus 294 ~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 294 GRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp TS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999988764442 34666899999999999999999988776543
No 439
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=63.35 E-value=2.4e+02 Score=31.04 Aligned_cols=64 Identities=20% Similarity=0.128 Sum_probs=38.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHH------HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063 335 LAHAKCANGNAEEAVELYKKAL------RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (519)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (519)
-|..|...|+.++|+..|+.+. .+..+. ..........-..|+.-+..++++-+|-+...+.+.
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 4556777777777777766543 333321 222333333335677777888888888777766543
No 440
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.35 E-value=1.1e+02 Score=27.29 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=36.0
Q ss_pred HHHHHHHhccCHHHH-HHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 010063 420 NLAASYSRSKNFVEA-ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482 (519)
Q Consensus 420 ~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (519)
+++.+....+.-+.. ..+.+.+++...+. +.........+..+|..+..-+++.+|..+|-.
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~~-~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKEF-GEGKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 344444444433333 34455566654442 222233445567888889888999999888854
No 441
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=63.03 E-value=46 Score=22.78 Aligned_cols=29 Identities=41% Similarity=0.511 Sum_probs=22.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 334 SLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
..|.-+-..|++++|+.+|.++++.+...
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34455556899999999999999987764
No 442
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.45 E-value=22 Score=24.39 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKE 150 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 150 (519)
..++..|...-..|+|++|+.+|.++++.+..
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 34666777778899999999999999998654
No 443
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=62.41 E-value=1.7e+02 Score=29.18 Aligned_cols=175 Identities=15% Similarity=0.049 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (519)
.....|......-...|+++...-.|++++--+. .....|...+......|+.+-|...+..+.++..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~---- 362 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIHV---- 362 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC----
Confidence 3345566666667788999999999999876542 2345677777888888999999998888888743
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
+..+. +...-+..-...|++..|...++....- .|....+-..-+.....+|+.+.+.. +.+....
T Consensus 363 --k~~~~---i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~ 428 (577)
T KOG1258|consen 363 --KKTPI---IHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYSS 428 (577)
T ss_pred --CCCcH---HHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHH
Confidence 23333 2344566777889999999999987653 25555555555666778888888874 2222221
Q ss_pred HHHhcCCCCcchh-HHHHHHHHHH-HhcCChHHHHHHHHHHHHHH
Q 010063 445 MTKTVGPDDQSIS-FPMLHLGITL-YHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 445 ~~~~~~~~~~~~~-~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~ 487 (519)
.. .|..++... ..+...+... .-.++.+.|...+.+++++.
T Consensus 429 ~~--~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 429 IY--EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred hc--ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 11 133333332 2233444433 34678888988888887754
No 444
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=61.82 E-value=1.2e+02 Score=27.24 Aligned_cols=62 Identities=23% Similarity=0.294 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 010063 306 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385 (519)
Q Consensus 306 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (519)
|+.+|.+|..+ .|..+..++.+|.++...|+.=.|+-+|-+++-. ..|. ..+..+|...+.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~---------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV---------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS---------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc---------CCCc-HHHHHHHHHHHHH
Confidence 67899999987 3777889999999999999999999999998853 1222 3455777777766
No 445
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.81 E-value=52 Score=32.72 Aligned_cols=121 Identities=17% Similarity=0.064 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (519)
....++..+..+|-.++|++ + .+++... -.+..+.|+++.|.++..++-.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~-------~-------s~D~d~r-------Felal~lgrl~iA~~la~e~~s--------- 665 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALE-------L-------STDPDQR-------FELALKLGRLDIAFDLAVEANS--------- 665 (794)
T ss_pred hhhhHHhHhhhccchHhhhh-------c-------CCChhhh-------hhhhhhcCcHHHHHHHHHhhcc---------
Confidence 34556666666666665544 3 2222221 2334566777777776655421
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHH------------H-HHHHHhcCChHHHH
Q 010063 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH------------L-GITLYHLNRDKEAE 477 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------l-a~~~~~~g~~~~A~ 477 (519)
..-|..||.+....|++..|.+++.++.+...-.+-.........+.. + =.+|...|++++..
T Consensus 666 ----~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 666 ----EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECL 741 (794)
T ss_pred ----hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHH
Confidence 124667788888888888888888877654321110000011111111 1 13566778888888
Q ss_pred HHHHHHHH
Q 010063 478 KLVLEALY 485 (519)
Q Consensus 478 ~~~~~a~~ 485 (519)
+.+.+.-+
T Consensus 742 ~lLi~t~r 749 (794)
T KOG0276|consen 742 ELLISTQR 749 (794)
T ss_pred HHHHhcCc
Confidence 87776633
No 446
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=61.55 E-value=37 Score=27.36 Aligned_cols=112 Identities=19% Similarity=0.132 Sum_probs=67.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc----cCC-------------------------CCchHHHHHHHHHHHH
Q 010063 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSN----YMS-------------------------LDDSIMENMRIDLAEL 382 (519)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~-------------------------~~~~~~~~~~~~la~~ 382 (519)
....+......|+.++|...+.++...+.... .+. ..+..........++-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 34567778889999999999999887665320 000 0012223344667888
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 383 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 383 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
..+.|+...|.+.++.+-.-..-....-.-.........+..+...|++.+|...+..+++
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8999999999988876421000000000112233445678888999999999999998876
No 447
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=61.47 E-value=49 Score=22.55 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010063 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (519)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (519)
.+...|...-..|++++|+.+|..+++.+....
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 366677777788999999999999999987765
No 448
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=61.41 E-value=20 Score=28.88 Aligned_cols=108 Identities=11% Similarity=0.058 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC--------------------------------chHHHHHHHHHHHHH
Q 010063 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD--------------------------------EPLLDAILLHMGSMY 213 (519)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~ 213 (519)
...+......|+.++|...+.++....+....+ ...........+.-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 345666778899999999998877754421100 011223356677778
Q ss_pred HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010063 214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (519)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (519)
...|+...|.+.++.+-.-..-..-.-.-.........+..+...|++.+|...+..+++
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 889999999887765421100000000112334455678889999999999999998875
No 449
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=61.35 E-value=77 Score=24.76 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 286 LVLPLFSLGSLFIKEGK---AVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
...+.+++++++....+ ..+.+.+++..++ ..+| ......+.|+..+.+.|+|++++.+.+..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 45677888988887654 3455556655554 1233 34556778999999999999999999988876
No 450
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.80 E-value=75 Score=24.49 Aligned_cols=86 Identities=13% Similarity=0.138 Sum_probs=55.2
Q ss_pred ccHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010063 217 ENYEKSMLVYQRVINVLESR-YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (519)
Q Consensus 217 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (519)
|.-..-..++++++..+... .-.+++.....+...+.... .+.++|...... .. ....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~---~I---G~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK---GI---GTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH---TT---STTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc---Cc---cHHHHHHHHHHHH
Confidence 45555567888888776432 11234555555555554322 777777766543 11 2345778888999
Q ss_pred HHHhCCCHHHHHHHHHHHH
Q 010063 296 LFIKEGKAVDAESVFSRIL 314 (519)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al 314 (519)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 451
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=59.76 E-value=70 Score=27.36 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=45.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh
Q 010063 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (519)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (519)
.+..+.+.+...+|+...+.-++. .|..+.....+-..+.-.|+|++|..-++-+..+.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka----------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~ 65 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA----------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS 65 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc----------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcC
Confidence 345667888889999888776665 56666666677778889999999998888766554
No 452
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=59.72 E-value=2.3e+02 Score=29.71 Aligned_cols=247 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHH
Q 010063 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM 209 (519)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (519)
..|.-+.-+.-++.-+.+ ++.....+..|-.+....|++++-...-.++.++. +..|.+..-|..-
T Consensus 91 ~~~~~~~ei~t~~ee~ai----------~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~----pl~~~lWl~Wl~d 156 (881)
T KOG0128|consen 91 NEGGGNQEIRTLEEELAI----------NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA----PLPPHLWLEWLKD 156 (881)
T ss_pred ccccchhHHHHHHHHhcc----------cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc----CCChHHHHHHHHH
Q ss_pred HHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 010063 210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 289 (519)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 289 (519)
-......++-.++...|++++.-.... +.-...+......+..+...++++.-...+.+++...-.... ........
T Consensus 157 ~~~mt~s~~~~~v~~~~ekal~dy~~v--~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~ 233 (881)
T KOG0128|consen 157 ELSMTQSEERKEVEELFEKALGDYNSV--PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEM 233 (881)
T ss_pred HHhhccCcchhHHHHHHHHHhcccccc--hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHH
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010063 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA---HAKCANGNAEEAVELYKKALRVIKDSNYMS 366 (519)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 366 (519)
+...-..|...-..++-+.++...+.. +.+.......+.... .......+++.|..-+.+.+..+.+. .
T Consensus 234 ~~E~e~~~l~n~~~~qv~a~~~~el~~-----~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~---~ 305 (881)
T KOG0128|consen 234 YREFEVTYLCNVEQRQVIALFVRELKQ-----PLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERL---V 305 (881)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhc-----cchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHH---h
Q ss_pred CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (519)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (519)
...+.....+..+.......|+...-...++++..
T Consensus 306 q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 306 QKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
No 453
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=59.36 E-value=83 Score=24.51 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=37.8
Q ss_pred HHHHH-HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010063 121 LFNEV-KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSG 190 (519)
Q Consensus 121 l~~~~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 190 (519)
.++.| ..+..+|.-++-.+.+..... +....+..+..+|.+|...|+..++.+++.+|-+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k----------n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK----------NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH---------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh----------ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34444 345566666655555554432 1445677899999999999999999999988754
No 454
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.35 E-value=56 Score=22.51 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (519)
.+...|.-.-..|++++|+.+|.++++.+..
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3444555666789999999999999998765
No 455
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=57.77 E-value=59 Score=22.30 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILD 166 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 166 (519)
...++..|...-..|++++|+.+|.++++.+..... ...++..-..+.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k-~e~~~~~k~~lr 53 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALH-YETDAQRKEALR 53 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-hCCCHHHHHHHH
Confidence 344777888888999999999999999998877652 233444444433
No 456
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=57.34 E-value=1e+02 Score=24.91 Aligned_cols=103 Identities=11% Similarity=-0.028 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 010063 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456 (519)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 456 (519)
..+...-...|.+.+|..++.+.++.. +..+...+|..++.|.....+-.--+.--++..+..--..++..|..
T Consensus 97 leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFW 170 (220)
T PF10858_consen 97 LEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFW 170 (220)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchH
Confidence 344445567789999999999988753 34566678888888877654322211111222222222223555665
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 457 SFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
+.+-...|..-...|...+|+++++..+.
T Consensus 171 atAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 171 ATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 55555555566678999999999988775
No 457
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=56.33 E-value=47 Score=26.23 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG 176 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 176 (519)
..++..+...+..|++.-|.++...++.. +|+...+....+.++..+|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~a----------dp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFA----------DPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------CCCcHHHHHHHHHHHHHHH
Confidence 34778888899999999999999998887 6666677777777766554
No 458
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.02 E-value=1.4e+02 Score=26.00 Aligned_cols=103 Identities=7% Similarity=0.049 Sum_probs=62.2
Q ss_pred HHhcCChHHHHHHHHHHHhhhhhcCCCc----h-HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010063 172 YVYIGDLKFVQSLLDMMSGIVDSLKDDE----P-LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246 (519)
Q Consensus 172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 246 (519)
.+..|+++.|+.+.+.+++....+++.. | .++.-....+......|+.-+. .+......+.. ...-.+...+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~-~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTT-EWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHh-cCCCChHHHHH
Confidence 4578999999999999988754443221 1 1223333444445555553221 12333333322 22333455677
Q ss_pred HHHHHHHHHh---------hcCCHHHHHHHHHHHHHHHH
Q 010063 247 SLLGMAKVLG---------SIGRAKKAVEIYHRVITILE 276 (519)
Q Consensus 247 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~ 276 (519)
.+...|..+. ..++...|..++++|+++..
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 7778888773 56788999999999999843
No 459
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=55.85 E-value=64 Score=22.13 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (519)
...++..|...-..|+|++|..+|..+++.+....
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~ 40 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGV 40 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 34467777777888999999999999999887754
No 460
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=53.15 E-value=43 Score=27.83 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=38.8
Q ss_pred CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010063 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (519)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (519)
...|....++.++..-|...|+++.|....+++++-..+..|.+||+
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~ 180 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPD 180 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccC
Confidence 35677788999999999999999999999999999888888888775
No 461
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=52.84 E-value=1.2e+02 Score=24.48 Aligned_cols=129 Identities=13% Similarity=0.051 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 010063 301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380 (519)
Q Consensus 301 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la 380 (519)
++-+-|...++..+... +..-.-.+...+-..-...|.+.+|..++.+.++.- .......+|..++
T Consensus 71 ~N~eLa~~tLEnLvt~s------nTKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk--------~YSeistsYaRi~ 136 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNS------NTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENK--------EYSEISTSYARIN 136 (220)
T ss_pred CcHHHHHHHHHHHHHcc------chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhh--------hHHHHHHHHHHHH
Confidence 45555666666644321 111111233334445567899999999999988762 3344556777777
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
.|.....+-.--..--++..+.......+..|..+.+-...+..-.+.|.-.+|+..++..+.
T Consensus 137 wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 137 WCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 777655443222222222222222233455677766666667777888999999999988776
No 462
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=50.55 E-value=79 Score=21.60 Aligned_cols=29 Identities=34% Similarity=0.418 Sum_probs=22.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 334 SLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
..|.-.-..|++++|+.+|.++++.+...
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34444557899999999999999887654
No 463
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=50.24 E-value=2.3e+02 Score=26.89 Aligned_cols=58 Identities=16% Similarity=0.017 Sum_probs=40.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH--HHcCChHHHHHHHH
Q 010063 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL--HIVGRGQEGRELLE 397 (519)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~ 397 (519)
.+..++..++|..|...++++.... ++++.......+..++.+| +..-++++|.+.++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~-----l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRL-----LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc-----cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4557788999999999999988652 1233333344555666655 45678889999988
No 464
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=50.02 E-value=35 Score=25.81 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcc
Q 010063 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 498 (519)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 498 (519)
..+...|..|...|+.+.|.-+|-+...+.+.+ +.||+.
T Consensus 39 ~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki--~~Hpdy 77 (115)
T PF08969_consen 39 NKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI--PKHPDY 77 (115)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH--CCSCCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hcCccc
Confidence 345677899999999999999999999999544 567764
No 465
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=49.23 E-value=2.1e+02 Score=26.17 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=51.2
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM-AMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
.|+...+++..+...++.|+|..|-.++-....+. .+.++.... .|..+|. -.-..+|+.|.+-+.+.-+....
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~----~~~d~n~lsalwGKlAS-EIL~qnWd~A~edL~rLre~IDs 199 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALV----SDPDRNYLSALWGKLAS-EILTQNWDGALEDLTRLREYIDS 199 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc----CCcchhhHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHcc
Confidence 57778899999999999999999998876554443 223343333 3444433 33456899999988887777654
No 466
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.23 E-value=2.2e+02 Score=26.33 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063 291 FSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (519)
Q Consensus 291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (519)
.+-|.++...++|.++...+..+-..++.
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~Kq 90 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQ 90 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhh
Confidence 34578888888888888777766555443
No 467
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.16 E-value=2e+02 Score=25.83 Aligned_cols=141 Identities=14% Similarity=0.069 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh-----hhHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA-----DLVLPLFSLG-SLFIKEGKAVDAESVFSRILKIYTK 319 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~ 319 (519)
..+-.-+....-..||..|++..+++++..........+ +.-..+..+| .++.++|++.++..+.-+-...-++
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 344455677777889999999999999877332111111 2223334444 5678899999998887665543222
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (519)
. .|. ++..-..+|.+.|++....+.-..-+..-.+ ..-+.....+-..+-.++.=.|.+++|+++..
T Consensus 116 l----Ppk---IleLCILLysKv~Ep~amlev~~~WL~~p~N----q~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 116 L----PPK---ILELCILLYSKVQEPAAMLEVASAWLQDPSN----QSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred C----CHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhCccc----CCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 1 222 3333345788899998877766655543111 01111111122334455556899999998874
No 468
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=48.84 E-value=1.3e+02 Score=29.64 Aligned_cols=84 Identities=18% Similarity=0.042 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 010063 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGENDGRVGMAMCS 334 (519)
Q Consensus 258 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 334 (519)
.+....|+..|.+++.. .|.....+.+.+.++.+.+ +.-.|+.-...++. -+|....++..
T Consensus 387 ~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alr--------ln~s~~kah~~ 450 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALR--------LNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhcc--------CChHHHHHHHH
Confidence 34556677777777664 4555667777777776643 33444444444444 35677789999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Q 010063 335 LAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~ 357 (519)
|+.++...+++.+|++....+..
T Consensus 451 la~aL~el~r~~eal~~~~alq~ 473 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQM 473 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhh
Confidence 99999999999999987765543
No 469
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=47.10 E-value=1.4e+02 Score=23.38 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 414 FVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
.+..+..+|.+|.+.|+..+|.+++.+|-+
T Consensus 119 ~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 119 NPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 346788899999999999999999999887
No 470
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=45.24 E-value=4.7e+02 Score=28.99 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=31.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH------HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 293 LGSLFIKEGKAVDAESVFSRILK------IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 293 la~~~~~~g~~~~A~~~~~~al~------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
-|..|...|+.++|+..|+.+.. +..+.. .........-..|+.-+..++++-+|-+...+.+.
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~-~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWREALSLAAQLS-EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 34455555666666655544332 222221 11112222234566666677777777666655443
No 471
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=44.84 E-value=98 Score=21.04 Aligned_cols=29 Identities=41% Similarity=0.527 Sum_probs=22.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 334 SLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
..|.-.-..|++++|+.+|..+++.+...
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34445556799999999999999887764
No 472
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.09 E-value=2.7e+02 Score=25.83 Aligned_cols=29 Identities=3% Similarity=-0.138 Sum_probs=20.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063 249 LGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (519)
.+-|.++...++|.+....+..+-...+.
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~Kq 90 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQ 90 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhh
Confidence 34578888888888887777766554443
No 473
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.73 E-value=4.5e+02 Score=28.33 Aligned_cols=182 Identities=16% Similarity=0.065 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccH--HHHHHHHHHHHHHHHH----hcC
Q 010063 165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENY--EKSMLVYQRVINVLES----RYG 238 (519)
Q Consensus 165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~----~~~ 238 (519)
+..|+..|...|+.++|++.+.....-.. ..+......+-.+-..+...+.. +-..++-.-.++.... .+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~---~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift 583 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDS---DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFT 583 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccc---ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeee
Confidence 56788888889999999988877655321 01111112222233333333332 2223222222211000 000
Q ss_pred CCCHHHHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh--------CCCHHHHHHH
Q 010063 239 KTSILLVTSL-LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK--------EGKAVDAESV 309 (519)
Q Consensus 239 ~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~ 309 (519)
.++...+... ...-.-|......+-++.+++.++...+.. . ......+...|.+ .++-+++.+.
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~----~---~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~ 656 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT----S---TLLHTVLLKLYLEKVLEQASTDGKGEEAPET 656 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc----c---hHHHHHHHHHHHHHHhhccCchhccccchhh
Confidence 0011001100 111223455677778888888887654221 1 1222222322222 2233345555
Q ss_pred --HHHHHHHHHHhcCCCChh-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 310 --FSRILKIYTKVYGENDGR-------VGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 310 --~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
.++.....+.. ..-+|. ....+...+.++.+.|+.++|+..|-.-+.
T Consensus 657 ~~rekl~~~l~~s-~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 657 TVREKLLDFLESS-DLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hHHHHHHHHhhhh-cccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 33333332222 111221 234566778888899999999988876654
No 474
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=43.16 E-value=2.2e+02 Score=24.58 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=47.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 010063 296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 375 (519)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 375 (519)
-+.+.+...+|+...+.-++ ..|........+-.+++-.|+|++|..-++-+-.+ .++....+..
T Consensus 10 eLL~~~sL~dai~~a~~qVk--------akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l-------~p~~t~~a~l 74 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVK--------AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL-------SPQDTVGASL 74 (273)
T ss_pred HHHHhccHHHHHHHHHHHHh--------cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc-------CcccchHHHH
Confidence 45566788888887776665 34555556666778899999999999888776655 3334444444
Q ss_pred HHHHHHH
Q 010063 376 RIDLAEL 382 (519)
Q Consensus 376 ~~~la~~ 382 (519)
|.++..+
T Consensus 75 yr~lir~ 81 (273)
T COG4455 75 YRHLIRC 81 (273)
T ss_pred HHHHHHH
Confidence 4444433
No 475
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=42.73 E-value=57 Score=17.75 Aligned_cols=27 Identities=15% Similarity=-0.053 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhc----CChHHHHHHHHHHHH
Q 010063 459 PMLHLGITLYHL----NRDKEAEKLVLEALY 485 (519)
Q Consensus 459 ~~~~la~~~~~~----g~~~~A~~~~~~a~~ 485 (519)
+...||.+|..- .+.++|..+++++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 456778777642 388999999998865
No 476
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=42.13 E-value=3.8e+02 Score=27.01 Aligned_cols=106 Identities=11% Similarity=0.077 Sum_probs=72.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR-ILKI 316 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~ 316 (519)
++.++.+..... +...+...++...+.-....++.. ++..+.+..+|+......|....+...+.. +...
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~ 131 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL 131 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 455566655555 777777888887777777777664 566778888898888877776666655544 3332
Q ss_pred HHHhcCCCChhHHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 317 YTKVYGENDGRVGM------AMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 317 ~~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
.|.... .+..++......|+..++....+++.+...
T Consensus 132 --------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p 173 (620)
T COG3914 132 --------SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLP 173 (620)
T ss_pred --------CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 122222 223368888889999999999988888754
No 477
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.65 E-value=3e+02 Score=26.58 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAV 148 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 148 (519)
..+...+..+..+...|++.+|+..|+..|...
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i 234 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSI 234 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 345556778888999999999999999988764
No 478
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=41.31 E-value=1.7e+02 Score=26.14 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
...+.....++-..+...++++.|....++.+.+. |....-...-|.+|.+.|.+.-|++-++..++.
T Consensus 177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~--------P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 177 REILSRLLRNLKAALLRELQWELALRVAERLLDLN--------PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhC--------CCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34455666778888999999999999999888752 333334456799999999999999998887663
No 479
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.09 E-value=3.4e+02 Score=25.86 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=39.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHH--HHHHHccccHHHHHHHHH
Q 010063 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM--GSMYSTLENYEKSMLVYQ 227 (519)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~ 227 (519)
.+...+..++|..|...++.+.... +.+........+..+ |..++..-++++|.+.++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~--l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRL--LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc--cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4556789999999999999987652 122222223334444 444567889999999998
No 480
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=39.66 E-value=4.5e+02 Score=27.17 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=12.8
Q ss_pred HHHHccccHHHHHHHHHH
Q 010063 211 SMYSTLENYEKSMLVYQR 228 (519)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~ 228 (519)
.++.-.|+|+.|+.++-+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 355567899999988876
No 481
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.39 E-value=1.1e+02 Score=20.00 Aligned_cols=35 Identities=9% Similarity=0.306 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 010063 115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVK 149 (519)
Q Consensus 115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~ 149 (519)
..++.--+..+..+...|++++|.++..+..+-..
T Consensus 20 RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~~ 54 (62)
T PF14689_consen 20 RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDLQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 33444455566788999999999999998876543
No 482
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=38.80 E-value=4.6e+02 Score=27.07 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010063 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (519)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (519)
+......+....|.-....|++++|+.+|.-+-
T Consensus 409 ~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 409 DEDFLREIIEQAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp SSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 344455556677888888899999988887653
No 483
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=38.75 E-value=61 Score=16.91 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.2
Q ss_pred CChhHHHHHHHHHHHH
Q 010063 132 GNKNDAIDLLQANYEA 147 (519)
Q Consensus 132 g~~~~A~~~~~~al~~ 147 (519)
|+.+.+...|++++..
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 5678888999998876
No 484
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=38.17 E-value=4.1e+02 Score=26.25 Aligned_cols=78 Identities=10% Similarity=0.030 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHhcCC
Q 010063 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN-YEKSMLVYQRVINVLESRYGK 239 (519)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~ 239 (519)
+...|........+.+.+.+-...|.+++... +++| .+|..-+.-.+..+. .+.|...+.+++.. .+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H----p~~~---dLWI~aA~wefe~n~ni~saRalflrgLR~-----np 171 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH----PNNP---DLWIYAAKWEFEINLNIESARALFLRGLRF-----NP 171 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCc---hhHHhhhhhHHhhccchHHHHHHHHHHhhc-----CC
Confidence 44555555555555666777777787777654 3333 335555555444443 78888888888775 34
Q ss_pred CCHHHHHHHHH
Q 010063 240 TSILLVTSLLG 250 (519)
Q Consensus 240 ~~~~~~~~~~~ 250 (519)
+.|.+...+..
T Consensus 172 dsp~Lw~eyfr 182 (568)
T KOG2396|consen 172 DSPKLWKEYFR 182 (568)
T ss_pred CChHHHHHHHH
Confidence 55544444433
No 485
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=37.72 E-value=76 Score=23.93 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010063 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (519)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (519)
+..+...|..|...|+.+.|.-+|-+.+.+...+ +.||+
T Consensus 38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki--~~Hpd 76 (115)
T PF08969_consen 38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI--PKHPD 76 (115)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH--CCSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hcCcc
Confidence 3456677999999999999999999999998544 45555
No 486
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.64 E-value=5e+02 Score=27.12 Aligned_cols=183 Identities=16% Similarity=0.137 Sum_probs=86.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCch
Q 010063 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370 (519)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 370 (519)
.+|..+...|+-++|..+.++++.- .+|. ...-.+.++..|...|+..--..++.-++. ..++.
T Consensus 506 ~vGiaL~~ygrqe~Ad~lI~el~~d-------kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--------D~nDD 570 (929)
T KOG2062|consen 506 AVGIALVVYGRQEDADPLIKELLRD-------KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--------DVNDD 570 (929)
T ss_pred HHhHHHHHhhhhhhhHHHHHHHhcC-------CchhhhhhhHHHHHHHHhccCchhhHHHhhccccc--------ccchH
Confidence 3455566667777777777666541 2222 223345566677777765443333333222 12222
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (519)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (519)
..-.+-..+|-++. .+++.-....+ +..+.+ +..-...+-..||.++...|. .+|+.+++.... +
T Consensus 571 VrRaAVialGFVl~--~dp~~~~s~V~----lLses~--N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~------D 635 (929)
T KOG2062|consen 571 VRRAAVIALGFVLF--RDPEQLPSTVS----LLSESY--NPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS------D 635 (929)
T ss_pred HHHHHHHHheeeEe--cChhhchHHHH----HHhhhc--ChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc------C
Confidence 22222233444333 33333332222 222221 111122345567888877776 567777765544 1
Q ss_pred CCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH
Q 010063 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVW 511 (519)
Q Consensus 451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 511 (519)
+.+--.-.++..+|.+..++.+ +--.-+....+.+.++.++.|.+. +..+|.+.
T Consensus 636 ~~~fVRQgAlIa~amIm~Q~t~--~~~pkv~~frk~l~kvI~dKhEd~-----~aK~GAil 689 (929)
T KOG2062|consen 636 PVDFVRQGALIALAMIMIQQTE--QLCPKVNGFRKQLEKVINDKHEDG-----MAKFGAIL 689 (929)
T ss_pred hHHHHHHHHHHHHHHHHHhccc--ccCchHHHHHHHHHHHhhhhhhHH-----HHHHHHHH
Confidence 1111122345566666665543 223333344444455556667655 55566554
No 487
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.55 E-value=4.6e+02 Score=27.37 Aligned_cols=105 Identities=11% Similarity=0.149 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH---HHHHHHHHHH---ccccHHHHHHHHHHHHH
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA---ILLHMGSMYS---TLENYEKSMLVYQRVIN 231 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~---~~g~~~~A~~~~~~al~ 231 (519)
+.-.+++-.++-..|....+|+.-+++.+....+-.. -..+. +.+..+.++. .-|+-++|+...-.+++
T Consensus 197 ~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t-----~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve 271 (1226)
T KOG4279|consen 197 DVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDT-----LKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVE 271 (1226)
T ss_pred cccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcch-----hhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHH
Confidence 3345666677778888999999988888776655311 11111 1111222222 34777777777666655
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH---------HhhcCCHHHHHHHHHHHHHH
Q 010063 232 VLESRYGKTSILLVTSLLGMAKV---------LGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~---------~~~~g~~~~A~~~~~~al~~ 274 (519)
.- |+-.|+ .+...|.+ |...+..+.|+++|+++.+.
T Consensus 272 ~e----g~vapD---m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 272 KE----GPVAPD---MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred hc----CCCCCc---eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 31 222232 22233444 34456677889999998875
No 488
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.00 E-value=1.5e+02 Score=28.13 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
.+..++|.+|-..+++++|+.+|++++.+..+
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 45567899999999999999999999998766
No 489
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=35.17 E-value=4.3e+02 Score=25.69 Aligned_cols=63 Identities=8% Similarity=0.127 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (519)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (519)
...+|+.-...+...++-+.|+...++++.. .|. ....++.+|...++-+.-..+|+++.+..
T Consensus 301 ~~evw~dys~Y~~~isd~q~al~tv~rg~~~--------sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 301 AEEVWFDYSEYLIGISDKQKALKTVERGIEM--------SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred hHHHHHHHHHHHhhccHHHHHHHHHHhcccC--------CCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 3444555555555666666666666655443 222 33456677777777666667777666543
No 490
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=34.91 E-value=3.8e+02 Score=25.03 Aligned_cols=59 Identities=17% Similarity=0.062 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhcCC---CCc-------------chhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 010063 433 EAERLLRICLDIMTKTVGP---DDQ-------------SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 491 (519)
Q Consensus 433 ~A~~~~~~al~~~~~~~~~---~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 491 (519)
++..+|++|.......... .-+ ..+.+++.+|..+...+++.+|+.+++.|....+...
T Consensus 211 ~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~ 285 (345)
T cd09034 211 EAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKESE 285 (345)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 5667777777766543211 111 1234556677777778899999999999988776553
No 491
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=34.61 E-value=1.5e+02 Score=20.29 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=21.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 336 AHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
|.-.-..|++++|..+|..+++.+...
T Consensus 13 Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 13 AVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 344456799999999999999887653
No 492
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=34.50 E-value=5e+02 Score=26.22 Aligned_cols=106 Identities=18% Similarity=-0.001 Sum_probs=69.0
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHH-HHHH
Q 010063 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI-CLDI 444 (519)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~ 444 (519)
++.++.+..... +...+...+....+.-....++. .++....+..+|+......|....+...+.+ +...
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~ 131 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLS--------VNPENCPAVQNLAAALELDGLQFLALADISEIAEWL 131 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHh--------cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 455555544434 66677777777777666666655 3556667888888888777776666655554 3331
Q ss_pred HHHhcCCCCcchhHHH------HHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063 445 MTKTVGPDDQSISFPM------LHLGITLYHLNRDKEAEKLVLEALYIRE 488 (519)
Q Consensus 445 ~~~~~~~~~~~~~~~~------~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (519)
.|...... +.++......|+..++....+++.++..
T Consensus 132 --------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p 173 (620)
T COG3914 132 --------SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLP 173 (620)
T ss_pred --------CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 12222222 2368888888999999999988888763
No 493
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.46 E-value=4.7e+02 Score=25.86 Aligned_cols=77 Identities=16% Similarity=0.071 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhccC
Q 010063 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN-AEEAVELYKKALRVIKDSNYM 365 (519)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~ 365 (519)
...+........+.+.+.+--..|.+++.. ||..+..|..-|.-.+..+. .+.|..++.+++..
T Consensus 105 ~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--------Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~------- 169 (568)
T KOG2396|consen 105 VKLWLSYIAFCKKKKTYGEVKKIFAAMLAK--------HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF------- 169 (568)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc-------
Confidence 344444444444555577777777777763 45555555555555444444 77777777777776
Q ss_pred CCCchHHHHHHHH
Q 010063 366 SLDDSIMENMRID 378 (519)
Q Consensus 366 ~~~~~~~~~~~~~ 378 (519)
.|+.+.+...+..
T Consensus 170 npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 170 NPDSPKLWKEYFR 182 (568)
T ss_pred CCCChHHHHHHHH
Confidence 4555555444433
No 494
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=33.96 E-value=3.8e+02 Score=24.66 Aligned_cols=182 Identities=13% Similarity=0.099 Sum_probs=97.5
Q ss_pred CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch-HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063 155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP-LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (519)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (519)
..-.++...+++..+...+..|+|..|-.++--...+. .+.++ .....|..+|.- .-.-+++.|++-+.+.-+..
T Consensus 122 ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~---~~~d~n~lsalwGKlASE-IL~qnWd~A~edL~rLre~I 197 (432)
T KOG2758|consen 122 YNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALV---SDPDRNYLSALWGKLASE-ILTQNWDGALEDLTRLREYI 197 (432)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc---CCcchhhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHH
Confidence 34478999999999999999999999998876665555 33334 333334445443 33458899998888776654
Q ss_pred HHhcCCCCHHHHHHHHHHHHH-------Hhh-cCCHHHHHHHH------HHHHHHHHHhcCCCChhhHHHHHHHHHHHHh
Q 010063 234 ESRYGKTSILLVTSLLGMAKV-------LGS-IGRAKKAVEIY------HRVITILELNRGTESADLVLPLFSLGSLFIK 299 (519)
Q Consensus 234 ~~~~~~~~~~~~~~~~~la~~-------~~~-~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 299 (519)
....-. .+ +..+....+. ++. -+--+.-++.| -.+++. ..+..+..|+....-
T Consensus 198 Ds~~f~-~~--~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt----------~cPhllRYLatAvvt 264 (432)
T KOG2758|consen 198 DSKSFS-TS--AQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT----------SCPHLLRYLATAVVT 264 (432)
T ss_pred cccccc-cH--HHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh----------hCHHHHHHHHHHhhc
Confidence 332111 11 1111111111 111 11111112211 122221 112344445544433
Q ss_pred C-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 300 E-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 300 ~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
. .+...+++-+-+.+.. +.+.-.+|-+ ..-.+++-.=++++|...++++-+...
T Consensus 265 nk~~rr~~lkdlvkVIqq--E~ysYkDPit-----eFl~clyvn~DFdgAq~kl~eCeeVl~ 319 (432)
T KOG2758|consen 265 NKRRRRNRLKDLVKVIQQ--ESYSYKDPIT-----EFLECLYVNYDFDGAQKKLRECEEVLV 319 (432)
T ss_pred chHhhHHHHHHHHHHHHH--hccccCCcHH-----HHHHHHhhccchHHHHHHHHHHHHHHh
Confidence 3 4555666666666553 2222233332 223344456699999999999888754
No 495
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=32.23 E-value=2.4e+02 Score=21.79 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 010063 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428 (519)
Q Consensus 349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 428 (519)
..++++++..+... ..-.+++....++...+... ++..++|..... ..--...+..|...|..+...
T Consensus 46 ~~lLerc~~~f~~~-~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~------~~IG~~~AlfYe~~A~~lE~~ 112 (125)
T smart00777 46 LTLLERCIRYFEDD-ERYKNDPRYLKIWLKYADNC------DEPRELFQFLYS------KGIGTKLALFYEEWAQLLEAA 112 (125)
T ss_pred HHHHHHHHHHhhhh-hhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHH------CCcchhhHHHHHHHHHHHHHc
Q ss_pred cCHHHHHHHHH
Q 010063 429 KNFVEAERLLR 439 (519)
Q Consensus 429 g~~~~A~~~~~ 439 (519)
|++.+|.+.|+
T Consensus 113 g~~~~A~~iy~ 123 (125)
T smart00777 113 GRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHH
No 496
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=31.30 E-value=1.8e+02 Score=20.01 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=19.1
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhh
Q 010063 340 CANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 340 ~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
-..|++++|..+|..+++.+...
T Consensus 17 d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 17 EEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999987764
No 497
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.06 E-value=6.4e+02 Score=26.44 Aligned_cols=127 Identities=13% Similarity=0.152 Sum_probs=67.9
Q ss_pred CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH---HHHHHHHHhh---cCCHHHHHHHHH
Q 010063 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS---LLGMAKVLGS---IGRAKKAVEIYH 269 (519)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---~~~la~~~~~---~g~~~~A~~~~~ 269 (519)
.+.+.....+..++-..|....+|+.-+++.+..-.+ ++.-.++.. .+..+.++-+ -|+-++|+...-
T Consensus 194 Dnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i------P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l 267 (1226)
T KOG4279|consen 194 DNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI------PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVL 267 (1226)
T ss_pred CCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC------cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHH
Confidence 3333444555677778888889998888777654433 111111111 1122333332 477777777766
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 010063 270 RVITILELNRGTESADLVLPLFSLGSLFI---------KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC 340 (519)
Q Consensus 270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 340 (519)
.+++. . | +.....+...|++|- ..+..+.|+.+|+++.+.- |. ..+=.|++.++.
T Consensus 268 ~lve~---e-g---~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve--------P~-~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 268 PLVEK---E-G---PVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE--------PL-EYSGINLATLLR 331 (1226)
T ss_pred HHHHh---c-C---CCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC--------ch-hhccccHHHHHH
Confidence 66553 1 2 222233334445443 3456677888888887742 22 123345666666
Q ss_pred HCCC
Q 010063 341 ANGN 344 (519)
Q Consensus 341 ~~g~ 344 (519)
..|+
T Consensus 332 aaG~ 335 (1226)
T KOG4279|consen 332 AAGE 335 (1226)
T ss_pred Hhhh
Confidence 5553
No 498
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=29.19 E-value=1.1e+02 Score=28.35 Aligned_cols=102 Identities=21% Similarity=0.171 Sum_probs=71.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhc----cC-----CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063 334 SLAHAKCANGNAEEAVELYKKALRVIKDSN----YM-----SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (519)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (519)
+.+.-..+.++++.|..-+.+++....... .. .+-.........+++.+-...+.+..|+..-..++.
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~--- 303 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR--- 303 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc---
Confidence 345566778888888888888877655210 00 011122234556778888888888888776665554
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
..+....+++..+..+....++++|.+.++.+..
T Consensus 304 -----~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 304 -----DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ 337 (372)
T ss_pred -----cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc
Confidence 3455567888999999999999999999988876
No 499
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=27.81 E-value=84 Score=29.60 Aligned_cols=38 Identities=24% Similarity=0.087 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 010063 474 KEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLL 516 (519)
Q Consensus 474 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~ 516 (519)
..|..+.++|++..++....+.|.+ |+++|.++..+|+
T Consensus 328 ~~a~~l~~~Al~yL~kA~d~ddPet-----Wv~vAEa~I~LGN 365 (404)
T PF12753_consen 328 KIAQELIKKALEYLKKAQDEDDPET-----WVDVAEAMIDLGN 365 (404)
T ss_dssp TTHHHHHHHHHHHHHHHHHS--TTH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCChhH-----HHHHHHHHhhhhc
Confidence 3466666666666666666777876 7777777777776
No 500
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.27 E-value=2.8e+02 Score=25.97 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (519)
....++....+.+...-.+....+++...... ......++..+-.+..+.++|.-+..++..-+.-..+..+..
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~------~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~ 177 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPS------NGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHL 177 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHhccC------ccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCC
Confidence 45566777777777777778888888765432 223344556667777788888877777654332222222334
Q ss_pred ChhHHHH-HHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 411 HPSFVTH-LLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 411 ~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
+|...-. ++.=|.++...++++.|..+|+.++.
T Consensus 178 ~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 178 DPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred CHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 4444333 34446678889999999999988764
Done!