Query 010063
Match_columns 519
No_of_seqs 1210 out of 2994
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 19:05:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 7.1E-32 2.4E-36 257.2 34.3 321 119-516 68-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-31 1.2E-35 252.4 35.1 313 129-518 44-356 (388)
3 3sf4_A G-protein-signaling mod 100.0 6.4E-30 2.2E-34 245.2 40.6 338 159-517 6-363 (406)
4 3sf4_A G-protein-signaling mod 100.0 1.1E-29 3.9E-34 243.4 40.9 343 119-483 10-373 (406)
5 3ieg_A DNAJ homolog subfamily 100.0 6.6E-29 2.3E-33 233.8 38.1 332 118-517 3-356 (359)
6 4a1s_A PINS, partner of inscut 100.0 1.1E-28 3.8E-33 237.0 39.3 316 158-490 44-376 (411)
7 3ro2_A PINS homolog, G-protein 100.0 6E-28 2.1E-32 225.0 39.2 312 161-489 4-335 (338)
8 2y4t_A DNAJ homolog subfamily 100.0 4.8E-28 1.6E-32 235.5 37.4 331 117-515 25-377 (450)
9 4a1s_A PINS, partner of inscut 100.0 2.8E-27 9.4E-32 227.3 41.2 312 116-447 46-375 (411)
10 3ro2_A PINS homolog, G-protein 100.0 7.8E-27 2.7E-31 217.5 40.0 309 119-447 6-335 (338)
11 3ulq_A Response regulator aspa 100.0 7.5E-27 2.6E-31 221.8 39.8 354 117-495 11-377 (383)
12 3fp2_A TPR repeat-containing p 100.0 9.1E-28 3.1E-32 239.1 35.1 339 116-518 23-479 (537)
13 2gw1_A Mitochondrial precursor 100.0 6E-27 2E-31 231.9 33.6 344 117-518 5-432 (514)
14 2gw1_A Mitochondrial precursor 100.0 2E-27 6.7E-32 235.3 29.5 343 119-518 40-466 (514)
15 2y4t_A DNAJ homolog subfamily 100.0 1E-26 3.5E-31 226.1 32.1 340 118-518 60-442 (450)
16 2xpi_A Anaphase-promoting comp 100.0 3.1E-26 1.1E-30 231.2 36.6 334 118-512 200-595 (597)
17 4g1t_A Interferon-induced prot 100.0 5.9E-26 2E-30 222.2 35.4 347 121-518 54-447 (472)
18 2xpi_A Anaphase-promoting comp 100.0 2.9E-26 9.8E-31 231.4 33.5 344 121-518 153-567 (597)
19 3q15_A PSP28, response regulat 100.0 1.9E-25 6.4E-30 211.6 36.6 353 117-495 11-374 (378)
20 1fch_A Peroxisomal targeting s 100.0 2.1E-27 7.3E-32 224.5 22.4 313 127-493 34-366 (368)
21 3hym_B Cell division cycle pro 100.0 2.6E-26 9E-31 213.4 27.6 297 120-474 24-322 (330)
22 3fp2_A TPR repeat-containing p 100.0 2.3E-25 7.9E-30 221.7 35.9 314 119-487 60-492 (537)
23 3ulq_A Response regulator aspa 100.0 1.7E-24 5.7E-29 205.6 39.9 273 163-452 104-376 (383)
24 3nf1_A KLC 1, kinesin light ch 100.0 1.5E-25 5.1E-30 206.4 31.5 285 194-488 18-309 (311)
25 3ieg_A DNAJ homolog subfamily 100.0 3.7E-25 1.3E-29 208.2 34.3 297 161-518 2-323 (359)
26 4eqf_A PEX5-related protein; a 100.0 9.1E-27 3.1E-31 219.9 22.5 293 160-493 63-363 (365)
27 3hym_B Cell division cycle pro 100.0 1E-26 3.4E-31 216.2 22.4 300 159-517 19-321 (330)
28 4eqf_A PEX5-related protein; a 99.9 3.8E-26 1.3E-30 215.6 25.7 286 121-449 68-361 (365)
29 3nf1_A KLC 1, kinesin light ch 99.9 7.6E-25 2.6E-29 201.7 32.2 283 155-445 20-308 (311)
30 1fch_A Peroxisomal targeting s 99.9 4.5E-25 1.5E-29 208.5 25.6 281 121-450 67-365 (368)
31 3q15_A PSP28, response regulat 99.9 3.2E-23 1.1E-27 196.3 37.9 271 162-450 101-371 (378)
32 4g1t_A Interferon-induced prot 99.9 1.8E-24 6.3E-29 211.6 29.4 310 131-486 24-363 (472)
33 3edt_B KLC 2, kinesin light ch 99.9 1.7E-24 5.8E-29 196.3 26.7 270 213-486 11-281 (283)
34 3edt_B KLC 2, kinesin light ch 99.9 5.6E-24 1.9E-28 192.9 27.7 270 172-444 11-281 (283)
35 1hz4_A MALT regulatory protein 99.9 1.5E-22 5.1E-27 191.5 38.1 313 161-489 13-325 (373)
36 3cv0_A Peroxisome targeting si 99.9 1.6E-24 5.3E-29 201.1 23.9 286 160-494 19-323 (327)
37 3cv0_A Peroxisome targeting si 99.9 4.3E-24 1.5E-28 198.2 26.3 282 121-450 24-321 (327)
38 1hz4_A MALT regulatory protein 99.9 6.3E-22 2.2E-26 187.2 37.3 310 118-447 14-325 (373)
39 3uq3_A Heat shock protein STI1 99.9 1.3E-21 4.3E-26 174.8 31.8 253 117-424 4-256 (258)
40 3uq3_A Heat shock protein STI1 99.9 1.3E-21 4.5E-26 174.7 31.7 254 159-465 2-255 (258)
41 3u4t_A TPR repeat-containing p 99.9 8.4E-23 2.9E-27 184.1 22.1 261 162-468 3-266 (272)
42 2h6f_A Protein farnesyltransfe 99.9 2.2E-22 7.4E-27 188.1 23.8 255 158-470 93-366 (382)
43 2h6f_A Protein farnesyltransfe 99.9 4.5E-22 1.5E-26 186.0 25.4 256 198-514 92-366 (382)
44 2xm6_A Protein corresponding t 99.9 1.4E-20 4.7E-25 184.6 35.2 299 120-513 77-411 (490)
45 3u4t_A TPR repeat-containing p 99.9 2.4E-22 8.2E-27 181.1 20.8 243 120-402 5-250 (272)
46 2xm6_A Protein corresponding t 99.9 1.5E-20 5E-25 184.4 34.9 299 120-513 41-375 (490)
47 2pl2_A Hypothetical conserved 99.9 4.4E-22 1.5E-26 172.4 18.6 197 245-484 5-212 (217)
48 2pl2_A Hypothetical conserved 99.9 6.7E-22 2.3E-26 171.2 18.6 200 159-400 2-212 (217)
49 3mkr_A Coatomer subunit epsilo 99.9 3.2E-20 1.1E-24 167.9 28.1 281 124-479 5-287 (291)
50 3mkr_A Coatomer subunit epsilo 99.9 4.4E-20 1.5E-24 167.0 25.5 262 171-498 8-271 (291)
51 1ouv_A Conserved hypothetical 99.9 2.5E-19 8.5E-24 161.4 27.1 224 202-487 5-252 (273)
52 1qqe_A Vesicular transport pro 99.9 1.1E-19 3.8E-24 165.0 24.5 225 206-443 40-268 (292)
53 1qqe_A Vesicular transport pro 99.9 1.4E-19 4.7E-24 164.4 24.2 234 218-485 32-268 (292)
54 2ifu_A Gamma-SNAP; membrane fu 99.9 3.2E-19 1.1E-23 163.3 26.7 248 215-478 3-253 (307)
55 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.1E-19 3.9E-24 163.8 23.4 256 171-480 14-269 (275)
56 2ifu_A Gamma-SNAP; membrane fu 99.8 4.7E-19 1.6E-23 162.1 26.7 247 174-436 3-253 (307)
57 1ouv_A Conserved hypothetical 99.8 6E-19 2.1E-23 158.9 26.7 225 159-444 3-251 (273)
58 1xnf_A Lipoprotein NLPI; TPR, 99.8 5.9E-19 2E-23 159.1 23.1 233 210-486 12-244 (275)
59 4abn_A Tetratricopeptide repea 99.8 2.3E-19 7.8E-24 174.3 21.6 205 197-441 96-318 (474)
60 4abn_A Tetratricopeptide repea 99.8 6E-19 2.1E-23 171.3 23.3 222 221-483 79-318 (474)
61 2q7f_A YRRB protein; TPR, prot 99.8 3E-19 1E-23 157.8 19.2 218 202-469 22-239 (243)
62 2q7f_A YRRB protein; TPR, prot 99.8 3E-19 1E-23 157.8 18.6 221 158-427 19-239 (243)
63 2ho1_A Type 4 fimbrial biogene 99.8 5.5E-18 1.9E-22 150.6 26.7 203 117-358 36-238 (252)
64 3vtx_A MAMA; tetratricopeptide 99.8 1.5E-18 5.2E-23 146.1 21.5 168 286-487 4-171 (184)
65 2ho1_A Type 4 fimbrial biogene 99.8 3.2E-18 1.1E-22 152.2 24.4 204 244-487 36-239 (252)
66 3vtx_A MAMA; tetratricopeptide 99.8 2.4E-18 8.2E-23 144.9 21.8 166 245-444 5-170 (184)
67 4gyw_A UDP-N-acetylglucosamine 99.8 7.1E-19 2.4E-23 177.2 21.7 175 198-406 4-178 (723)
68 4gyw_A UDP-N-acetylglucosamine 99.8 5.8E-19 2E-23 177.9 20.3 174 157-361 4-177 (723)
69 2vq2_A PILW, putative fimbrial 99.8 1.9E-17 6.5E-22 144.2 27.2 207 199-444 4-211 (225)
70 2vq2_A PILW, putative fimbrial 99.8 1.6E-17 5.4E-22 144.7 26.0 207 241-486 4-211 (225)
71 3qky_A Outer membrane assembly 99.8 5.5E-18 1.9E-22 151.4 23.0 210 158-393 11-252 (261)
72 3qky_A Outer membrane assembly 99.8 3.2E-18 1.1E-22 153.0 21.4 208 243-477 13-252 (261)
73 3n71_A Histone lysine methyltr 99.8 6E-18 2.1E-22 162.1 21.1 153 333-487 313-465 (490)
74 3e4b_A ALGK; tetratricopeptide 99.8 5.9E-19 2E-23 170.3 13.8 301 123-513 8-366 (452)
75 3n71_A Histone lysine methyltr 99.8 8E-18 2.8E-22 161.2 21.5 153 208-360 314-466 (490)
76 4i17_A Hypothetical protein; T 99.8 1.3E-16 4.3E-21 139.4 25.0 184 246-467 8-224 (228)
77 3e4b_A ALGK; tetratricopeptide 99.8 9.1E-18 3.1E-22 162.0 17.4 220 205-485 143-386 (452)
78 2ooe_A Cleavage stimulation fa 99.7 1E-15 3.4E-20 151.6 29.3 329 122-517 17-441 (530)
79 4i17_A Hypothetical protein; T 99.7 2.3E-16 7.9E-21 137.7 21.7 170 162-358 7-209 (228)
80 3gw4_A Uncharacterized protein 99.7 4.2E-16 1.4E-20 133.3 22.6 193 256-465 3-195 (203)
81 3gw4_A Uncharacterized protein 99.7 6.3E-16 2.2E-20 132.2 22.9 194 214-424 3-196 (203)
82 2qfc_A PLCR protein; TPR, HTH, 99.7 5.3E-16 1.8E-20 140.9 22.9 195 202-406 74-270 (293)
83 3u3w_A Transcriptional activat 99.7 9.6E-16 3.3E-20 139.2 24.0 194 243-448 73-270 (293)
84 3u3w_A Transcriptional activat 99.7 9.8E-16 3.3E-20 139.2 23.7 192 118-320 75-270 (293)
85 2qfc_A PLCR protein; TPR, HTH, 99.7 7.4E-15 2.5E-19 133.4 29.0 192 117-320 74-270 (293)
86 4b4t_Q 26S proteasome regulato 99.7 6.2E-15 2.1E-19 142.2 29.7 239 165-412 7-255 (434)
87 2ooe_A Cleavage stimulation fa 99.7 3.4E-14 1.2E-18 140.6 34.6 306 121-486 49-454 (530)
88 2ond_A Cleavage stimulation fa 99.7 1E-15 3.5E-20 140.1 21.6 223 135-403 33-271 (308)
89 4b4t_Q 26S proteasome regulato 99.7 5.3E-15 1.8E-19 142.7 27.5 239 206-453 7-254 (434)
90 3qww_A SET and MYND domain-con 99.7 2.3E-16 7.8E-21 148.7 16.8 115 385-499 310-424 (433)
91 2ond_A Cleavage stimulation fa 99.7 5E-15 1.7E-19 135.5 25.2 222 179-445 33-271 (308)
92 3qwp_A SET and MYND domain-con 99.7 2.9E-16 9.9E-21 148.5 15.5 134 380-515 294-427 (429)
93 2yhc_A BAMD, UPF0169 lipoprote 99.7 8.3E-15 2.8E-19 127.3 23.6 177 245-443 4-212 (225)
94 2yhc_A BAMD, UPF0169 lipoprote 99.7 5.1E-15 1.7E-19 128.7 21.8 177 287-485 4-212 (225)
95 3as5_A MAMA; tetratricopeptide 99.7 3.1E-15 1.1E-19 125.6 19.3 173 158-361 4-176 (186)
96 3as5_A MAMA; tetratricopeptide 99.7 2.8E-15 9.6E-20 125.9 18.0 170 284-487 5-174 (186)
97 1xi4_A Clathrin heavy chain; a 99.7 2.6E-14 8.8E-19 147.2 28.0 254 125-486 1056-1309(1630)
98 2pzi_A Probable serine/threoni 99.7 7.2E-16 2.5E-20 156.4 15.7 200 129-362 402-602 (681)
99 2pzi_A Probable serine/threoni 99.7 6.5E-16 2.2E-20 156.7 15.3 200 256-490 402-602 (681)
100 3qww_A SET and MYND domain-con 99.7 3.9E-15 1.3E-19 140.3 19.1 124 213-336 308-431 (433)
101 3ro3_A PINS homolog, G-protein 99.7 1.1E-14 3.8E-19 119.3 19.7 156 325-488 5-160 (164)
102 3ro3_A PINS homolog, G-protein 99.7 2.3E-14 7.8E-19 117.4 21.3 158 240-405 4-161 (164)
103 3urz_A Uncharacterized protein 99.7 9.8E-15 3.4E-19 125.1 19.5 166 287-487 4-187 (208)
104 4ga2_A E3 SUMO-protein ligase 99.7 9.8E-16 3.3E-20 123.6 12.2 147 208-388 2-149 (150)
105 4ga2_A E3 SUMO-protein ligase 99.6 7.2E-16 2.5E-20 124.4 10.9 147 167-344 2-149 (150)
106 3urz_A Uncharacterized protein 99.6 1.6E-14 5.6E-19 123.7 20.0 165 162-358 4-186 (208)
107 1xi4_A Clathrin heavy chain; a 99.6 1.2E-13 4.1E-18 142.4 27.3 300 126-517 1070-1371(1630)
108 3qwp_A SET and MYND domain-con 99.6 6.9E-15 2.4E-19 139.1 16.3 133 209-341 293-425 (429)
109 1b89_A Protein (clathrin heavy 99.6 5.4E-16 1.8E-20 143.2 8.4 284 129-518 14-299 (449)
110 4gco_A Protein STI-1; structur 99.6 9.1E-14 3.1E-18 108.1 14.8 118 197-338 7-124 (126)
111 4gco_A Protein STI-1; structur 99.6 1.4E-13 4.8E-18 107.0 15.6 116 241-382 9-124 (126)
112 3dra_A Protein farnesyltransfe 99.6 1.1E-12 3.7E-17 117.6 22.9 251 117-422 31-300 (306)
113 1b89_A Protein (clathrin heavy 99.5 6E-15 2.1E-19 136.2 7.9 273 120-483 34-308 (449)
114 3qou_A Protein YBBN; thioredox 99.5 1.8E-13 6.2E-18 123.5 16.7 169 284-486 114-284 (287)
115 3rjv_A Putative SEL1 repeat pr 99.5 3.6E-13 1.2E-17 115.6 17.7 177 262-486 3-197 (212)
116 3rjv_A Putative SEL1 repeat pr 99.5 3.1E-13 1.1E-17 116.0 17.1 177 135-358 3-197 (212)
117 3qou_A Protein YBBN; thioredox 99.5 3.3E-13 1.1E-17 121.7 17.3 165 119-316 118-284 (287)
118 2r5s_A Uncharacterized protein 99.5 1.1E-13 3.7E-18 115.1 13.1 167 287-486 6-173 (176)
119 2r5s_A Uncharacterized protein 99.5 1.3E-13 4.3E-18 114.7 12.2 162 121-316 9-173 (176)
120 4f3v_A ESX-1 secretion system 99.5 1.1E-12 3.8E-17 114.5 18.4 211 115-358 4-237 (282)
121 4f3v_A ESX-1 secretion system 99.5 1E-13 3.6E-18 121.0 11.8 207 206-444 10-237 (282)
122 3dra_A Protein farnesyltransfe 99.5 9E-12 3.1E-16 111.6 24.5 239 173-464 43-300 (306)
123 4gcn_A Protein STI-1; structur 99.5 1.4E-12 4.9E-17 101.5 16.9 108 284-402 5-112 (127)
124 4gcn_A Protein STI-1; structur 99.5 1.6E-12 5.6E-17 101.2 17.0 108 242-358 5-112 (127)
125 2vsy_A XCC0866; transferase, g 99.5 4.1E-13 1.4E-17 134.0 16.1 153 131-316 2-157 (568)
126 3gyz_A Chaperone protein IPGC; 99.5 1.9E-12 6.4E-17 103.6 16.4 102 241-358 32-133 (151)
127 2vsy_A XCC0866; transferase, g 99.5 8.8E-13 3E-17 131.6 17.8 153 258-444 2-157 (568)
128 3gyz_A Chaperone protein IPGC; 99.4 4E-12 1.4E-16 101.7 16.0 104 197-316 30-133 (151)
129 1p5q_A FKBP52, FK506-binding p 99.4 4.6E-13 1.6E-17 123.6 12.1 164 174-360 125-296 (336)
130 1p5q_A FKBP52, FK506-binding p 99.4 3.2E-13 1.1E-17 124.7 10.9 161 131-317 126-295 (336)
131 2fo7_A Synthetic consensus TPR 99.4 1.9E-11 6.5E-16 96.2 17.3 130 205-358 3-132 (136)
132 2vgx_A Chaperone SYCD; alterna 99.4 4.3E-12 1.5E-16 101.7 13.5 103 241-359 17-119 (148)
133 2fo7_A Synthetic consensus TPR 99.4 2.1E-11 7.1E-16 96.0 17.2 131 246-402 2-132 (136)
134 1a17_A Serine/threonine protei 99.4 3.9E-11 1.3E-15 98.4 19.4 140 243-406 11-150 (166)
135 3dss_A Geranylgeranyl transfer 99.4 2.9E-10 1E-14 102.3 26.4 235 117-402 28-304 (331)
136 2vgx_A Chaperone SYCD; alterna 99.4 4.4E-12 1.5E-16 101.7 11.8 103 158-275 17-119 (148)
137 1a17_A Serine/threonine protei 99.4 3.8E-11 1.3E-15 98.5 17.2 139 201-361 11-149 (166)
138 3upv_A Heat shock protein STI1 99.4 5.4E-11 1.8E-15 92.5 17.1 122 201-340 2-123 (126)
139 2hr2_A Hypothetical protein; a 99.4 4.1E-11 1.4E-15 94.4 16.0 117 245-362 11-135 (159)
140 3upv_A Heat shock protein STI1 99.4 4.3E-11 1.5E-15 93.1 16.2 102 244-361 3-104 (126)
141 2c2l_A CHIP, carboxy terminus 99.3 2.8E-12 9.7E-17 115.2 10.0 194 245-485 4-198 (281)
142 2hr2_A Hypothetical protein; a 99.3 3.3E-11 1.1E-15 94.9 14.8 116 373-489 11-134 (159)
143 1hh8_A P67PHOX, NCF-2, neutrop 99.3 2.4E-11 8.4E-16 104.3 15.5 139 245-402 6-150 (213)
144 1hh8_A P67PHOX, NCF-2, neutrop 99.3 4.3E-11 1.5E-15 102.8 15.8 136 204-358 7-150 (213)
145 2fbn_A 70 kDa peptidylprolyl i 99.3 3.3E-12 1.1E-16 108.4 8.5 166 290-483 7-183 (198)
146 2fbn_A 70 kDa peptidylprolyl i 99.3 4.4E-12 1.5E-16 107.6 9.0 161 166-349 8-176 (198)
147 2lni_A Stress-induced-phosphop 99.3 6.7E-11 2.3E-15 92.8 14.3 125 155-302 9-133 (133)
148 2vyi_A SGTA protein; chaperone 99.3 1.8E-10 6.3E-15 89.9 16.2 124 241-390 8-131 (131)
149 2lni_A Stress-induced-phosphop 99.3 8.5E-11 2.9E-15 92.2 14.1 123 240-388 11-133 (133)
150 3sz7_A HSC70 cochaperone (SGT) 99.3 2.4E-10 8.3E-15 93.4 17.2 104 368-487 6-109 (164)
151 2xcb_A PCRH, regulatory protei 99.3 2.6E-10 8.7E-15 90.7 16.8 104 241-360 14-117 (142)
152 1wao_1 Serine/threonine protei 99.3 2.8E-12 9.4E-17 124.1 6.1 181 242-448 3-201 (477)
153 3rkv_A Putative peptidylprolyl 99.3 1.2E-10 4.1E-15 95.1 14.7 109 200-316 8-126 (162)
154 2vyi_A SGTA protein; chaperone 99.3 1.4E-10 4.7E-15 90.6 14.5 124 198-345 7-130 (131)
155 2c2l_A CHIP, carboxy terminus 99.3 1.1E-11 3.9E-16 111.2 9.0 194 203-443 4-198 (281)
156 3sz7_A HSC70 cochaperone (SGT) 99.3 1.8E-10 6.1E-15 94.3 15.5 103 241-359 7-109 (164)
157 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 7.5E-12 2.6E-16 120.7 8.2 153 131-309 247-407 (457)
158 1wao_1 Serine/threonine protei 99.3 2.5E-12 8.5E-17 124.4 4.8 179 285-489 4-200 (477)
159 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.6E-11 5.5E-16 118.3 10.4 160 174-356 246-413 (457)
160 2xcb_A PCRH, regulatory protei 99.3 2E-10 6.9E-15 91.3 14.9 103 369-487 14-116 (142)
161 2e2e_A Formate-dependent nitri 99.2 5.4E-11 1.8E-15 98.8 11.9 122 213-358 20-144 (177)
162 2e2e_A Formate-dependent nitri 99.2 6.7E-11 2.3E-15 98.2 12.4 122 128-274 20-144 (177)
163 3dss_A Geranylgeranyl transfer 99.2 1.8E-08 6.2E-13 90.7 28.3 223 173-444 40-304 (331)
164 3mv2_B Coatomer subunit epsilo 99.2 1.8E-09 6.3E-14 95.5 21.3 257 171-498 22-289 (310)
165 3rkv_A Putative peptidylprolyl 99.2 2.4E-10 8.2E-15 93.3 14.1 126 158-299 7-144 (162)
166 2xev_A YBGF; tetratricopeptide 99.2 1E-09 3.5E-14 85.5 17.1 102 247-358 4-105 (129)
167 3q7a_A Farnesyltransferase alp 99.2 2.2E-09 7.7E-14 97.0 21.3 244 200-485 51-330 (349)
168 3q7a_A Farnesyltransferase alp 99.2 4.2E-09 1.4E-13 95.2 22.6 241 162-443 54-330 (349)
169 1na0_A Designed protein CTPR3; 99.2 1E-09 3.6E-14 84.7 15.5 117 245-387 9-125 (125)
170 3mv2_B Coatomer subunit epsilo 99.2 4.3E-09 1.5E-13 93.2 20.8 262 124-457 19-290 (310)
171 1na0_A Designed protein CTPR3; 99.2 9E-10 3.1E-14 85.1 14.6 117 203-343 9-125 (125)
172 3q49_B STIP1 homology and U bo 99.2 1.6E-09 5.3E-14 85.5 16.0 101 373-489 9-109 (137)
173 2xev_A YBGF; tetratricopeptide 99.2 3E-09 1E-13 82.8 17.3 103 289-403 4-106 (129)
174 3q49_B STIP1 homology and U bo 99.2 1.6E-09 5.4E-14 85.5 15.6 102 244-361 8-109 (137)
175 1elr_A TPR2A-domain of HOP; HO 99.1 1.9E-09 6.5E-14 84.0 15.8 106 244-358 3-108 (131)
176 1ihg_A Cyclophilin 40; ppiase 99.1 9.4E-10 3.2E-14 102.5 15.9 133 202-350 222-362 (370)
177 1hxi_A PEX5, peroxisome target 99.1 4.1E-10 1.4E-14 86.5 11.2 97 247-359 19-115 (121)
178 1elr_A TPR2A-domain of HOP; HO 99.1 1.3E-09 4.4E-14 85.0 14.3 107 160-274 2-108 (131)
179 1ihg_A Cyclophilin 40; ppiase 99.1 1.3E-09 4.5E-14 101.5 15.7 132 245-394 223-362 (370)
180 1hxi_A PEX5, peroxisome target 99.1 6.4E-10 2.2E-14 85.5 10.5 96 121-233 20-115 (121)
181 1elw_A TPR1-domain of HOP; HOP 99.1 3.1E-09 1.1E-13 81.0 14.2 113 203-339 4-116 (118)
182 1elw_A TPR1-domain of HOP; HOP 99.1 3.5E-09 1.2E-13 80.7 14.2 98 245-358 4-101 (118)
183 2dba_A Smooth muscle cell asso 99.1 2E-09 6.7E-14 86.1 13.1 104 200-316 25-128 (148)
184 2dba_A Smooth muscle cell asso 99.1 2.8E-09 9.5E-14 85.2 13.5 120 158-297 24-143 (148)
185 2if4_A ATFKBP42; FKBP-like, al 99.0 6.5E-10 2.2E-14 102.5 10.4 144 200-359 176-329 (338)
186 1dce_A Protein (RAB geranylger 99.0 6.8E-09 2.3E-13 102.1 16.9 190 117-347 27-244 (567)
187 2if4_A ATFKBP42; FKBP-like, al 99.0 8.1E-10 2.8E-14 101.9 9.3 138 159-316 176-328 (338)
188 4e6h_A MRNA 3'-END-processing 99.0 2.8E-07 9.6E-12 92.0 27.6 230 220-487 326-571 (679)
189 3k9i_A BH0479 protein; putativ 99.0 1.4E-09 4.6E-14 83.2 8.2 90 215-317 2-91 (117)
190 2kck_A TPR repeat; tetratricop 99.0 1.6E-09 5.4E-14 81.9 7.5 98 245-358 6-106 (112)
191 1dce_A Protein (RAB geranylger 98.9 2.6E-08 9E-13 98.0 17.7 174 260-475 44-244 (567)
192 3k9i_A BH0479 protein; putativ 98.9 3.6E-09 1.2E-13 80.8 9.0 89 174-274 2-90 (117)
193 4e6h_A MRNA 3'-END-processing 98.9 3E-07 1E-11 91.8 25.1 230 135-403 326-571 (679)
194 2kck_A TPR repeat; tetratricop 98.9 2.1E-09 7.2E-14 81.1 6.7 97 204-316 7-106 (112)
195 1zu2_A Mitochondrial import re 98.8 1.1E-08 3.7E-13 80.4 8.2 86 257-358 14-120 (158)
196 1zu2_A Mitochondrial import re 98.8 1.8E-08 6E-13 79.2 8.7 87 129-232 13-120 (158)
197 1na3_A Designed protein CTPR2; 98.8 1E-07 3.4E-12 68.7 11.5 86 242-343 6-91 (91)
198 2kat_A Uncharacterized protein 98.8 4.9E-08 1.7E-12 74.1 10.0 84 390-489 2-85 (115)
199 2l6j_A TPR repeat-containing p 98.7 8.5E-09 2.9E-13 77.7 4.8 96 245-353 4-102 (111)
200 1na3_A Designed protein CTPR2; 98.7 1.4E-07 4.8E-12 67.9 10.8 86 200-301 6-91 (91)
201 2l6j_A TPR repeat-containing p 98.7 1.3E-07 4.6E-12 71.0 11.0 91 415-518 4-95 (111)
202 1klx_A Cysteine rich protein B 98.7 3.8E-07 1.3E-11 71.5 13.3 111 216-358 8-126 (138)
203 3ma5_A Tetratricopeptide repea 98.7 1.1E-07 3.6E-12 70.0 9.4 91 411-517 3-93 (100)
204 1klx_A Cysteine rich protein B 98.7 3.1E-07 1E-11 72.1 12.1 110 343-486 9-126 (138)
205 2kat_A Uncharacterized protein 98.6 1.2E-07 4E-12 71.9 8.9 84 135-235 2-85 (115)
206 4g26_A Pentatricopeptide repea 98.6 3.7E-06 1.2E-10 81.4 21.0 168 289-486 28-204 (501)
207 2uy1_A Cleavage stimulation fa 98.6 0.0001 3.5E-09 71.3 30.9 310 118-488 14-415 (493)
208 4g26_A Pentatricopeptide repea 98.6 4.2E-06 1.4E-10 81.0 20.2 166 248-443 29-203 (501)
209 3ma5_A Tetratricopeptide repea 98.6 6.3E-07 2.1E-11 65.8 10.9 71 283-361 3-73 (100)
210 3txn_A 26S proteasome regulato 98.4 0.00022 7.6E-09 65.5 24.6 212 204-430 20-235 (394)
211 3txn_A 26S proteasome regulato 98.3 0.00023 7.8E-09 65.4 23.9 188 246-446 20-212 (394)
212 2uy1_A Cleavage stimulation fa 98.3 8.8E-05 3E-09 71.7 21.7 284 130-483 6-380 (493)
213 2kc7_A BFR218_protein; tetratr 98.3 1.9E-06 6.5E-11 63.0 7.8 88 249-360 4-92 (99)
214 2kc7_A BFR218_protein; tetratr 98.3 2.2E-06 7.4E-11 62.7 7.6 87 122-233 4-91 (99)
215 2v5f_A Prolyl 4-hydroxylase su 98.2 1.8E-05 6.3E-10 58.2 11.4 80 206-294 8-87 (104)
216 3u64_A Protein TP_0956; tetrat 98.2 0.00027 9.1E-09 61.1 18.7 83 260-358 178-269 (301)
217 2v5f_A Prolyl 4-hydroxylase su 98.2 9.2E-05 3.1E-09 54.4 14.0 71 287-358 5-75 (104)
218 3ly7_A Transcriptional activat 98.1 9E-05 3.1E-09 66.9 16.2 134 121-274 199-339 (372)
219 3ly7_A Transcriptional activat 98.1 0.00026 9E-09 63.9 18.7 133 207-358 200-339 (372)
220 3u64_A Protein TP_0956; tetrat 98.0 0.0014 4.9E-08 56.6 20.3 85 218-316 178-269 (301)
221 3ffl_A Anaphase-promoting comp 98.0 0.0003 1E-08 54.9 13.9 128 330-467 21-165 (167)
222 3bee_A Putative YFRE protein; 97.9 0.00011 3.7E-09 52.5 10.1 67 284-358 3-72 (93)
223 4b4t_P 26S proteasome regulato 97.8 0.015 5.1E-07 55.1 26.4 231 116-361 15-250 (445)
224 3ffl_A Anaphase-promoting comp 97.8 0.00057 2E-08 53.3 13.3 107 121-228 23-147 (167)
225 1pc2_A Mitochondria fission pr 97.8 0.001 3.6E-08 51.5 14.7 68 284-358 29-100 (152)
226 3bee_A Putative YFRE protein; 97.8 0.00018 6.1E-09 51.3 9.5 64 245-316 6-72 (93)
227 1pc2_A Mitochondria fission pr 97.7 0.0012 4E-08 51.2 13.5 83 219-316 14-100 (152)
228 4b4t_P 26S proteasome regulato 97.6 0.027 9.3E-07 53.3 23.3 218 175-406 29-251 (445)
229 1nzn_A CGI-135 protein, fissio 96.8 0.081 2.8E-06 39.4 14.1 67 285-358 33-103 (126)
230 4h7y_A Dual specificity protei 96.8 0.063 2.2E-06 41.0 13.2 102 377-487 17-124 (161)
231 4h7y_A Dual specificity protei 96.4 0.039 1.3E-06 42.1 10.1 103 331-444 15-123 (161)
232 3spa_A Mtrpol, DNA-directed RN 96.3 0.04 1.4E-06 56.5 12.9 105 201-316 125-230 (1134)
233 3spa_A Mtrpol, DNA-directed RN 96.3 0.07 2.4E-06 54.8 14.4 105 243-358 125-230 (1134)
234 3mkq_A Coatomer beta'-subunit; 96.3 0.099 3.4E-06 54.1 16.5 75 207-313 633-707 (814)
235 4b4t_R RPN7, 26S proteasome re 96.1 0.067 2.3E-06 50.4 12.8 109 285-402 129-237 (429)
236 4b4t_R RPN7, 26S proteasome re 95.9 0.079 2.7E-06 49.9 12.2 104 121-232 134-237 (429)
237 1nzn_A CGI-135 protein, fissio 95.8 0.38 1.3E-05 35.8 14.2 69 158-232 31-103 (126)
238 3mkq_A Coatomer beta'-subunit; 95.6 0.34 1.2E-05 50.0 16.7 25 205-229 683-707 (814)
239 2ff4_A Probable regulatory pro 95.2 0.26 8.9E-06 45.7 12.7 118 116-240 113-242 (388)
240 4gns_B Protein CSD3, chitin bi 94.7 1.1 3.8E-05 45.0 16.3 123 175-313 261-397 (754)
241 3lpz_A GET4 (YOR164C homolog); 94.6 2.3 7.9E-05 37.8 27.3 237 161-428 34-295 (336)
242 2ff4_A Probable regulatory pro 94.3 0.99 3.4E-05 41.8 14.2 103 214-324 126-242 (388)
243 3o48_A Mitochondria fission 1 94.2 1.3 4.4E-05 33.1 12.0 64 119-192 41-108 (134)
244 3mkq_B Coatomer subunit alpha; 94.2 0.58 2E-05 37.2 10.4 103 126-271 13-115 (177)
245 4gns_B Protein CSD3, chitin bi 93.9 2 6.8E-05 43.2 16.3 127 213-355 258-397 (754)
246 3mkq_B Coatomer subunit alpha; 93.8 1 3.6E-05 35.8 11.3 101 297-441 15-115 (177)
247 3o48_A Mitochondria fission 1 93.7 0.91 3.1E-05 33.9 10.1 69 158-232 36-107 (134)
248 1y8m_A FIS1; mitochondria, unk 93.6 1.8 6.1E-05 32.8 13.1 68 159-232 36-106 (144)
249 2wpv_A GET4, UPF0363 protein Y 93.6 3.7 0.00013 36.3 24.8 150 290-445 56-218 (312)
250 4b4t_S RPN3, 26S proteasome re 93.4 0.8 2.7E-05 43.4 11.7 143 213-358 146-299 (523)
251 1ya0_A SMG-7 transcript varian 93.4 0.77 2.6E-05 43.8 11.8 63 245-315 152-214 (497)
252 4b4t_S RPN3, 26S proteasome re 93.1 4.2 0.00014 38.6 16.0 144 254-402 145-299 (523)
253 3kae_A CDC27, possible protein 93.1 2.4 8.1E-05 33.1 11.6 97 377-486 37-143 (242)
254 4ady_A RPN2, 26S proteasome re 92.3 12 0.0004 38.7 23.2 199 174-400 386-587 (963)
255 1y8m_A FIS1; mitochondria, unk 91.2 3.9 0.00013 31.0 15.3 68 284-358 36-106 (144)
256 4fhn_B Nucleoporin NUP120; pro 90.6 12 0.00041 40.3 18.3 105 288-398 843-963 (1139)
257 2wpv_A GET4, UPF0363 protein Y 90.5 8.7 0.0003 33.9 29.0 145 118-269 13-158 (312)
258 4fhn_B Nucleoporin NUP120; pro 90.4 3.4 0.00012 44.5 14.0 106 331-440 844-963 (1139)
259 3kae_A CDC27, possible protein 90.2 5.6 0.00019 31.1 13.2 96 250-358 38-143 (242)
260 1ya0_A SMG-7 transcript varian 88.8 1.3 4.6E-05 42.1 8.4 79 204-298 153-231 (497)
261 3lpz_A GET4 (YOR164C homolog); 88.2 14 0.00047 32.9 31.8 191 121-318 15-218 (336)
262 4ady_A RPN2, 26S proteasome re 87.8 28 0.00095 36.0 26.3 266 129-442 385-656 (963)
263 2o8p_A 14-3-3 domain containin 87.3 12 0.00039 31.1 22.0 181 292-487 11-198 (227)
264 4a5x_A MITD1, MIT domain-conta 87.0 5.5 0.00019 27.2 8.3 40 114-153 12-51 (86)
265 1o9d_A 14-3-3-like protein C; 86.6 14 0.00048 31.4 19.1 185 248-445 11-208 (260)
266 4b4t_O 26S proteasome regulato 86.2 9.3 0.00032 35.2 12.3 108 380-487 83-199 (393)
267 1zbp_A Hypothetical protein VP 85.3 10 0.00036 32.3 10.9 124 126-275 5-130 (273)
268 1o9d_A 14-3-3-like protein C; 84.5 18 0.00061 30.7 21.1 57 431-487 151-208 (260)
269 4b4t_O 26S proteasome regulato 83.4 27 0.00094 32.1 16.8 107 169-275 83-199 (393)
270 2cpt_A SKD1 protein, vacuolar 82.7 12 0.00041 27.3 9.5 57 116-172 16-72 (117)
271 2o8p_A 14-3-3 domain containin 82.4 20 0.00067 29.7 20.0 181 123-317 11-198 (227)
272 3iqu_A 14-3-3 protein sigma; s 82.1 21 0.00072 29.8 20.1 60 431-490 149-209 (236)
273 2w2u_A Hypothetical P60 katani 80.6 11 0.00037 25.5 8.8 38 116-153 17-54 (83)
274 3ubw_A 14-3-3E, 14-3-3 protein 80.4 26 0.00088 29.7 21.5 59 389-447 172-231 (261)
275 2br9_A 14-3-3E, 14-3-3 protein 78.8 28 0.00094 29.1 21.8 59 389-447 146-205 (234)
276 3uzd_A 14-3-3 protein gamma; s 78.1 30 0.001 29.1 23.3 59 389-447 147-206 (248)
277 3efz_A 14-3-3 protein; 14-3-3, 77.9 32 0.0011 29.3 12.4 56 389-444 168-226 (268)
278 1wfd_A Hypothetical protein 15 77.9 15 0.00051 25.5 8.4 50 117-167 14-63 (93)
279 3efz_A 14-3-3 protein; 14-3-3, 77.8 6.1 0.00021 33.6 6.8 56 431-486 168-226 (268)
280 2v6y_A AAA family ATPase, P60 74.7 17 0.00058 24.6 9.0 37 117-153 10-46 (83)
281 2vkj_A TM1634; membrane protei 74.5 17 0.00058 24.5 7.1 32 116-147 51-82 (106)
282 1qsa_A Protein (soluble lytic 74.2 70 0.0024 31.5 29.5 127 336-485 221-347 (618)
283 2rpa_A Katanin P60 ATPase-cont 73.6 17 0.00059 24.1 7.8 36 118-153 12-47 (78)
284 3iqu_A 14-3-3 protein sigma; s 73.2 40 0.0014 28.2 22.9 184 248-446 11-207 (236)
285 1zbp_A Hypothetical protein VP 71.5 48 0.0016 28.4 12.5 122 297-445 7-130 (273)
286 2br9_A 14-3-3E, 14-3-3 protein 71.0 45 0.0015 27.8 22.8 62 431-492 146-208 (234)
287 2w2u_A Hypothetical P60 katani 70.8 19 0.00066 24.3 6.7 29 333-361 23-51 (83)
288 2npm_A 14-3-3 domain containin 70.6 49 0.0017 28.1 20.7 57 389-446 172-229 (260)
289 2crb_A Nuclear receptor bindin 69.7 15 0.00051 25.1 5.7 34 328-361 14-47 (97)
290 2crb_A Nuclear receptor bindin 67.6 20 0.00069 24.5 6.0 38 370-407 12-49 (97)
291 4a5x_A MITD1, MIT domain-conta 67.1 27 0.00092 23.8 7.8 32 331-362 18-49 (86)
292 3uzd_A 14-3-3 protein gamma; s 66.3 58 0.002 27.4 23.8 60 431-490 147-207 (248)
293 3ubw_A 14-3-3E, 14-3-3 protein 65.1 64 0.0022 27.4 23.9 60 431-490 172-232 (261)
294 2v6x_A Vacuolar protein sortin 65.0 29 0.001 23.4 9.0 36 117-152 12-47 (85)
295 2wvi_A Mitotic checkpoint seri 63.6 43 0.0015 26.1 8.3 82 393-486 43-125 (164)
296 4aez_C MAD3, mitotic spindle c 63.2 63 0.0022 26.7 11.6 83 392-486 96-179 (223)
297 4gq4_A Menin; tumor suppressor 63.0 92 0.0031 28.5 13.4 73 287-362 262-336 (489)
298 2npm_A 14-3-3 domain containin 62.3 73 0.0025 27.1 23.0 59 431-490 172-231 (260)
299 3re2_A Predicted protein; meni 61.8 89 0.003 27.9 14.2 73 286-361 254-328 (472)
300 1wfd_A Hypothetical protein 15 59.9 40 0.0014 23.3 8.1 31 332-362 18-48 (93)
301 2cpt_A SKD1 protein, vacuolar 59.1 46 0.0016 24.2 7.3 27 466-492 27-53 (117)
302 2v6y_A AAA family ATPase, P60 58.6 39 0.0013 22.7 7.7 27 335-361 17-43 (83)
303 2wvi_A Mitotic checkpoint seri 58.4 61 0.0021 25.3 8.3 82 349-443 43-124 (164)
304 3u84_A Menin; MLL, JUND, ledgf 58.0 1.1E+02 0.0038 27.9 14.1 73 287-362 277-351 (550)
305 1wy6_A Hypothetical protein ST 57.6 43 0.0015 25.2 6.8 55 126-190 99-153 (172)
306 3re2_A Predicted protein; meni 57.3 1.1E+02 0.0037 27.4 13.9 70 375-447 257-328 (472)
307 1wy6_A Hypothetical protein ST 55.8 45 0.0015 25.2 6.6 53 425-485 101-153 (172)
308 2rpa_A Katanin P60 ATPase-cont 55.5 19 0.00063 24.0 4.2 36 460-495 15-50 (78)
309 4gq4_A Menin; tumor suppressor 54.8 1.3E+02 0.0044 27.6 13.2 55 390-447 281-335 (489)
310 4a1g_A Mitotic checkpoint seri 53.5 74 0.0025 24.4 8.1 81 393-485 48-129 (152)
311 3u84_A Menin; MLL, JUND, ledgf 53.4 1.3E+02 0.0046 27.4 13.4 54 391-447 297-350 (550)
312 3t5v_B Nuclear mRNA export pro 53.2 40 0.0014 31.6 7.7 69 375-444 178-249 (455)
313 3esl_A Checkpoint serine/threo 52.8 91 0.0031 25.3 16.4 85 394-485 58-143 (202)
314 4gq2_M Nucleoporin NUP120; bet 52.6 1.9E+02 0.0066 30.3 13.6 71 288-358 841-926 (950)
315 4aez_C MAD3, mitotic spindle c 51.5 67 0.0023 26.5 7.8 83 349-444 97-179 (223)
316 2v6x_A Vacuolar protein sortin 49.6 57 0.0019 22.0 7.5 29 333-361 17-45 (85)
317 4gq2_M Nucleoporin NUP120; bet 49.5 59 0.002 34.1 9.2 70 163-232 841-926 (950)
318 3t5v_B Nuclear mRNA export pro 46.8 1.4E+02 0.0049 27.9 10.3 69 166-234 180-252 (455)
319 2ijq_A Hypothetical protein; s 44.9 78 0.0027 24.6 6.9 68 166-236 36-108 (161)
320 2cwy_A Hypothetical protein TT 43.1 50 0.0017 22.9 5.1 65 123-197 6-74 (94)
321 2a9u_A Ubiquitin carboxyl-term 41.9 45 0.0016 25.3 5.1 39 459-499 44-82 (144)
322 2xze_A STAM-binding protein; h 41.5 40 0.0014 25.7 4.8 41 458-499 41-81 (146)
323 3ax2_A Mitochondrial import re 39.8 27 0.00091 22.9 3.0 27 461-487 21-47 (73)
324 1om2_A Protein (mitochondrial 39.5 43 0.0015 23.2 4.2 27 461-487 24-50 (95)
325 1zb1_A BRO1 protein; AIP1, BRO 38.8 2.3E+02 0.0078 25.9 11.4 59 433-491 217-291 (392)
326 2wb7_A PT26-6P; extra chromoso 38.2 2.2E+02 0.0074 26.8 9.6 40 390-429 449-488 (526)
327 3ax2_A Mitochondrial import re 37.5 85 0.0029 20.5 5.4 28 332-359 20-47 (73)
328 2cwy_A Hypothetical protein TT 37.0 74 0.0025 22.0 5.2 64 168-236 7-72 (94)
329 3myv_A SUSD superfamily protei 34.3 67 0.0023 30.2 6.2 35 283-317 186-220 (454)
330 2wb7_A PT26-6P; extra chromoso 33.8 1.1E+02 0.0037 28.7 7.0 34 263-296 450-483 (526)
331 3t5x_A PCI domain-containing p 33.4 95 0.0032 25.2 6.2 59 285-346 12-70 (203)
332 3r9m_A BRO1 domain-containing 32.8 2.8E+02 0.0096 25.1 11.4 120 371-490 112-286 (376)
333 2wm9_A Dedicator of cytokinesi 32.3 2.3E+02 0.008 26.2 9.4 34 369-402 7-40 (428)
334 2ijq_A Hypothetical protein; s 32.1 1.8E+02 0.0061 22.6 9.6 70 120-196 34-109 (161)
335 1zb1_A BRO1 protein; AIP1, BRO 31.8 3E+02 0.01 25.1 10.5 32 247-278 259-290 (392)
336 2xze_A STAM-binding protein; h 31.3 72 0.0025 24.3 4.8 41 415-456 40-80 (146)
337 3t5x_A PCI domain-containing p 31.2 1.1E+02 0.0039 24.7 6.3 59 243-304 12-70 (203)
338 3myv_A SUSD superfamily protei 31.0 77 0.0026 29.7 6.1 35 325-359 186-220 (454)
339 3kez_A Putative sugar binding 30.7 73 0.0025 30.0 5.8 35 283-317 192-226 (461)
340 2vkj_A TM1634; membrane protei 30.4 1.3E+02 0.0044 20.4 6.8 48 160-212 51-99 (106)
341 1om2_A Protein (mitochondrial 29.9 71 0.0024 22.1 4.0 27 291-317 24-50 (95)
342 3kez_A Putative sugar binding 26.6 99 0.0034 29.1 6.0 35 453-487 192-226 (461)
343 3mv2_A Coatomer subunit alpha; 25.1 3.5E+02 0.012 23.8 12.4 32 117-148 113-144 (325)
344 3mcx_A SUSD superfamily protei 24.6 84 0.0029 29.7 5.1 34 283-316 198-231 (477)
345 2a9u_A Ubiquitin carboxyl-term 23.7 2.4E+02 0.0082 21.3 9.1 41 416-458 43-83 (144)
346 3mcx_A SUSD superfamily protei 21.9 97 0.0033 29.3 4.9 34 325-358 198-231 (477)
347 2wm9_A Dedicator of cytokinesi 21.8 4.8E+02 0.016 24.1 11.1 29 329-357 11-39 (428)
348 3snx_A SUSD homolog, putative 21.4 1.6E+02 0.0054 27.7 6.2 33 283-315 187-219 (460)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.1e-32 Score=257.17 Aligned_cols=321 Identities=17% Similarity=0.162 Sum_probs=278.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (519)
..+...+..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++...
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 131 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRL----------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN------ 131 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 34777889999999999999999999987 77778899999999999999999999999988764
Q ss_pred chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (519)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (519)
|....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++++
T Consensus 132 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 198 (388)
T 1w3b_A 132 -PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---- 198 (388)
T ss_dssp -TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred -CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 444456889999999999999999999999875 2444678899999999999999999999999987
Q ss_pred cCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
.|....++..+|.++...|++++|+..+++++.+ +|....++.++|.++...|++++|+..++++++.
T Consensus 199 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4666789999999999999999999999999985 4555678899999999999999999999999886
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010063 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (519)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (519)
.|+.+ .++.++|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++
T Consensus 267 -------~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 267 -------QPHFP---DAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp -------CSSCH---HHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -------CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34443 45789999999999999999999999985 2444578889999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhh
Q 010063 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLL 516 (519)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~ 516 (519)
+++++ ..|....++..+|.++...|++++|+.+|++++++. |++ ..++.++|.++..+|+
T Consensus 329 ~~al~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----p~~-----~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 329 RKALE--------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----PTF-----ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTT--------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-----TTC-----HHHHHHHHHHHHHTCC
T ss_pred HHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC-----HHHHHhHHHHHHHccC
Confidence 99987 246677889999999999999999999999998742 333 3568999999998875
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.5e-31 Score=252.37 Aligned_cols=313 Identities=15% Similarity=0.111 Sum_probs=201.1
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (519)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (519)
...|++++|+.++++++.. .|..+.++..+|.++...|++++|+..|++++.+. |....++..
T Consensus 44 ~~~~~~~~a~~~~~~a~~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~ 106 (388)
T 1w3b_A 44 FQCRRLDRSAHFSTLAIKQ----------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------PDFIDGYIN 106 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------cchHHHHHH
Confidence 3445555555555555544 44555566666666666666666666666655542 222334556
Q ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 010063 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (519)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (519)
+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..|+++++. .|....
T Consensus 107 l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 170 (388)
T 1w3b_A 107 LAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAV 170 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHH
Confidence 666666666666666666666553 1222445556666666666666666666666654 344556
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (519)
++.++|.++...|++++|+..|++++++ +|....++.++|.++...|++++|+..+++++.. .|+
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~ 235 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-------SPN 235 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-------CTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CcC
Confidence 6667777777777777777777776664 3444556667777777777777777777777665 233
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (519)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (519)
+ ..++.++|.++...|++++|+..+++++++ .|....++..+|.++...|++++|+.+|++++++
T Consensus 236 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 300 (388)
T 1w3b_A 236 H---AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---- 300 (388)
T ss_dssp C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH----
T ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence 3 334567777788888888888877777763 3444456777888888888888888888887774
Q ss_pred cCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
.|....++..+|.++...|++++|+.++++++++. |+. ..++.++|.+|..+|++.
T Consensus 301 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~--~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 301 ----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEF--AAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--------TTC--HHHHHHHHHHHHTTTCCH
T ss_pred ----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCc--HHHHHHHHHHHHHcCCHH
Confidence 24445667778888888888888888888776531 222 345778888888888764
No 3
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.4e-30 Score=245.19 Aligned_cols=338 Identities=17% Similarity=0.181 Sum_probs=293.8
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 238 (519)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 238 (519)
......+...|..+...|++++|+..+++++... +.+.+....++..+|.++...|++++|+.++++++.+....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 80 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-- 80 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--
Confidence 3446678899999999999999999999998874 33444567789999999999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC----------------
Q 010063 239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK---------------- 302 (519)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------- 302 (519)
.+.+....++..+|.++...|++++|+.++++++++..... +.+....++..+|.++...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 45577889999999999999999999999999999988764 445667899999999999999
Q ss_pred ----HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHH
Q 010063 303 ----AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378 (519)
Q Consensus 303 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 378 (519)
+++|+.++++++.+.... .+.+....++.++|.++...|++++|+.++++++++.... +++.....++.+
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~ 232 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERRAYSN 232 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc----CCcHHHHHHHHH
Confidence 999999999999998776 2456778899999999999999999999999999998773 556677778999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhH
Q 010063 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458 (519)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 458 (519)
+|.++...|++++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++.+.... .+.+....
T Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~ 308 (406)
T 3sf4_A 233 LGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGR 308 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHH
Confidence 9999999999999999999999988765 2455667899999999999999999999999999988775 34566678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY 517 (519)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~ 517 (519)
++..+|.+|...|++++|..++++++++.++.. .......++..+|.++..+|+.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVG----DKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----CCcchhHHHHHHHHHHHHhhHh
Confidence 899999999999999999999999999987652 2233457788999999999976
No 4
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-29 Score=243.41 Aligned_cols=343 Identities=17% Similarity=0.192 Sum_probs=293.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
..+...|..+...|++++|+.+++++++. .+..+ ..+.++..+|.++...|++++|+..+++++.+.... .
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~ 81 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQV-------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-G 81 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-c
Confidence 34677899999999999999999999987 33333 346789999999999999999999999999988764 4
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC-----------------
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR----------------- 260 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 260 (519)
+.+....++..+|.++...|++++|+.++++++.+.... .+.+....++..+|.++...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 567778889999999999999999999999999998775 3446678899999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010063 261 ---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 337 (519)
Q Consensus 261 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 337 (519)
+++|+.++++++++..... +.+....++.++|.++...|++++|+.++++++++.... ++.+....++.++|.
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 235 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHH
Confidence 9999999999999987763 567778899999999999999999999999999998775 244557778999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063 338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417 (519)
Q Consensus 338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 417 (519)
++...|++++|+.++++++.+.... .++.....++..+|.++...|++++|+.++++++.+..... +.+....+
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~ 309 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLARQL----KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN--DRIGEGRA 309 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhC----cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--CcHHHHHH
Confidence 9999999999999999999998763 45666678889999999999999999999999999987752 45667789
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063 418 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (519)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (519)
+..+|.+|...|++++|..++++++++.... .+.+....++..+|.++...|+...+...+.+.
T Consensus 310 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 373 (406)
T 3sf4_A 310 CWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSE 373 (406)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 9999999999999999999999999998876 345677888999999999999875444333333
No 5
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.98 E-value=6.6e-29 Score=233.81 Aligned_cols=332 Identities=14% Similarity=0.036 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
...++..|..+...|++++|+..++++++. .|..+.++..+|.++...|++++|+..+++++...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----- 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK----- 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Confidence 345788999999999999999999999987 67778899999999999999999999999998774
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH------------HHHHHhhcCCHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG------------MAKVLGSIGRAKKAV 265 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------la~~~~~~g~~~~A~ 265 (519)
|....++..+|.++...|++++|+..+++++... +.......++.. +|.++...|++++|+
T Consensus 68 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 68 --MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 3334568999999999999999999999998752 200022333333 489999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 010063 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 345 (519)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 345 (519)
..++++++. .|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++
T Consensus 141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCH
Confidence 999999987 4556788999999999999999999999999874 455567899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchHHHHH---------HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCh-hHH
Q 010063 346 EEAVELYKKALRVIKDSNYMSLDDSIMENM---------RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP-SFV 415 (519)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~ 415 (519)
++|+..++++++. .++.+..... ...+|.++...|++++|+..+++++... ++.+ ...
T Consensus 205 ~~A~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~ 272 (359)
T 3ieg_A 205 ELSLSEVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTV 272 (359)
T ss_dssp HHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHH
T ss_pred HHHHHHHHHHHhh-------CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHH
Confidence 9999999999987 3444443222 2355899999999999999999998863 2233 234
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 495 (519)
..+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|..+|++++++. |++
T Consensus 273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-----p~~ 339 (359)
T 3ieg_A 273 RSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-----END 339 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC
Confidence 56788999999999999999999999985 35556788999999999999999999999999753 344
Q ss_pred CcchhhHHHHHHHHHHHHhhhc
Q 010063 496 LPVGKLFCFVLFGLVWFCLLLY 517 (519)
Q Consensus 496 ~~~~~~~~~~~l~~~~~~lg~~ 517 (519)
+ .....|+.++..+++.
T Consensus 340 ~-----~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 340 Q-----QIREGLEKAQRLLKQS 356 (359)
T ss_dssp H-----HHHHHHHHHHHHHHHH
T ss_pred h-----HHHHHHHHHHHHHHHh
Confidence 3 3366778887777654
No 6
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.98 E-value=1.1e-28 Score=236.99 Aligned_cols=316 Identities=18% Similarity=0.195 Sum_probs=278.0
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
.+.....+..+|..+...|++++|+..+++++... +.+......++..+|.++...|++++|+.++++++.+.+..
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 119 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM- 119 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence 45667788899999999999999999999999874 33444456789999999999999999999999999998775
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC---------------
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK--------------- 302 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------- 302 (519)
.+.+....++..+|.+|...|++++|+.++++++++..... +.+....++.++|.+|...|+
T Consensus 120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 45678889999999999999999999999999999987764 467778899999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 010063 303 --AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380 (519)
Q Consensus 303 --~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la 380 (519)
+++|+.++++++++..... +.+....++.++|.++...|++++|+.++++++++.... .+......++.++|
T Consensus 197 ~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la 270 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF----GDRAAERRANSNLG 270 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHH
Confidence 9999999999999887762 446678899999999999999999999999999998763 45566677889999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 010063 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM 460 (519)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 460 (519)
.++...|++++|+.++++++.+.... .+......++..+|.++...|++++|+.++++++.+.... .+.+....++
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 346 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARAC 346 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHH
Confidence 99999999999999999999998765 2445667889999999999999999999999999998776 3456677889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010063 461 LHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (519)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 490 (519)
..+|.+|...|++++|..++++++++.++.
T Consensus 347 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 347 WSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999987654
No 7
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.97 E-value=6e-28 Score=225.02 Aligned_cols=312 Identities=17% Similarity=0.202 Sum_probs=270.5
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (519)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (519)
....+...|..+...|++++|+..+++++... +.+.+....++..+|.++...|++++|+.++++++.+.... .+
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 78 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD 78 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cc
Confidence 34567888999999999999999999999874 33444556789999999999999999999999999998775 35
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC------------------
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK------------------ 302 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------ 302 (519)
.+....++..+|.++...|++++|+.++++++++.+... +.+....++..+|.++...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 567788999999999999999999999999999987753 445667899999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 010063 303 --AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380 (519)
Q Consensus 303 --~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la 380 (519)
+++|+.++++++.+.+... +.+....++.++|.++...|++++|+.+++++++..... +++.....++..+|
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~l~ 230 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERRAYSNLG 230 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----CChHHHHHHHHHHH
Confidence 9999999999999887762 456677899999999999999999999999999998763 45666677889999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 010063 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM 460 (519)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 460 (519)
.++...|++++|+.++++++.+.... .+.+....++..+|.++...|++++|..++++++.+.... .+.+....++
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~ 306 (338)
T 3ro2_A 231 NAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRAC 306 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 99999999999999999999988765 2455667889999999999999999999999999988775 3345667788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010063 461 LHLGITLYHLNRDKEAEKLVLEALYIREI 489 (519)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 489 (519)
..+|.+|...|++++|..++++++++.++
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998754
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=4.8e-28 Score=235.53 Aligned_cols=331 Identities=15% Similarity=0.061 Sum_probs=271.4
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (519)
....++..+..+...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..+++++...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----
Confidence 4555888899999999999999999999987 66778899999999999999999999999998874
Q ss_pred CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH---HH---------HHHHHHHHHHHhhcCCHHHH
Q 010063 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI---LL---------VTSLLGMAKVLGSIGRAKKA 264 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~---------~~~~~~la~~~~~~g~~~~A 264 (519)
|....++..+|.+|...|++++|+..|++++.. .++.+ .. ...+..+|.++...|++++|
T Consensus 91 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 91 ---MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 333566899999999999999999999999864 22322 11 11244558889999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 010063 265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 344 (519)
Q Consensus 265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 344 (519)
+..++++++. .|....++..+|.+|...|++++|+..++++++.. |....++..+|.++...|+
T Consensus 163 ~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 163 IAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCC
Confidence 9999999986 45567889999999999999999999999999863 3445688999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCchHHHHHH---------HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-H
Q 010063 345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMR---------IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-F 414 (519)
Q Consensus 345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~ 414 (519)
+++|+..+++++.. .++.......+ ..+|.++...|++++|+.+|++++.+. +.++. .
T Consensus 227 ~~~A~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~ 294 (450)
T 2y4t_A 227 HELSLSEVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSIAEYT 294 (450)
T ss_dssp HHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CSSHHHH
T ss_pred HHHHHHHHHHHHHh-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CcchHHH
Confidence 99999999999976 34444433332 345999999999999999999998853 23333 3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010063 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494 (519)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 494 (519)
...+..+|.++...|++++|+..+++++.+ .|....++..+|.++...|++++|..++++++++. ++
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~ 361 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-----EN 361 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----SS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----cc
Confidence 568899999999999999999999999985 35556788999999999999999999999999843 34
Q ss_pred CCcchhhHHHHHHHHHHHHhh
Q 010063 495 SLPVGKLFCFVLFGLVWFCLL 515 (519)
Q Consensus 495 ~~~~~~~~~~~~l~~~~~~lg 515 (519)
++ ..+..++.+...++
T Consensus 362 ~~-----~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 362 DQ-----QIREGLEKAQRLLK 377 (450)
T ss_dssp CH-----HHHHHHHHHHHHHH
T ss_pred hH-----HHHHHHHHHHHHhh
Confidence 33 33667776554443
No 9
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.97 E-value=2.8e-27 Score=227.29 Aligned_cols=312 Identities=16% Similarity=0.172 Sum_probs=272.8
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhh
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (519)
.....++..+..+...|++++|+.+++++++. .+.++ ..+.++..+|.+|...|++++|+..+++++.+...
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 118 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQA-------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS 118 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34455778999999999999999999999987 33333 34578999999999999999999999999998876
Q ss_pred cCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC--------------
Q 010063 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-------------- 260 (519)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------- 260 (519)
. .+.+....++..+|.+|...|++++|+.++++++.+.... .+.+....++..+|.+|...|+
T Consensus 119 ~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 119 M-NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred c-cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 4 4567888889999999999999999999999999998775 3557788899999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010063 261 ---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 337 (519)
Q Consensus 261 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 337 (519)
+++|+.++++++++..... +.+....++.++|.++...|++++|+.++++++++..... +......++.++|.
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~ 271 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGN 271 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHH
Confidence 9999999999999887764 4567788999999999999999999999999999987752 34456778999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063 338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417 (519)
Q Consensus 338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 417 (519)
++...|++++|+.++++++...... .+......++..+|.++...|++++|+.++++++.+..... +.+....+
T Consensus 272 ~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~ 345 (411)
T 4a1s_A 272 SHIFLGQFEDAAEHYKRTLALAVEL----GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG--DRIGEARA 345 (411)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChHHHHHH
Confidence 9999999999999999999998763 45556678889999999999999999999999999987762 45667789
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 418 LLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
+..+|.+|...|++++|..++++++.+.++
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999997644
No 10
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.97 E-value=7.8e-27 Score=217.46 Aligned_cols=309 Identities=17% Similarity=0.210 Sum_probs=267.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
..++..|..+...|++++|+.+++++++. .+.++ ..+.++..+|.++...|++++|+..+++++.+.... .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~ 77 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQV-------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-G 77 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh-------CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-c
Confidence 34777899999999999999999999987 33333 346789999999999999999999999999887664 4
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC-----------------
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR----------------- 260 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 260 (519)
+.+....++..+|.++...|++++|+.++++++++.... .+.+....++..+|.++...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 557778889999999999999999999999999998774 3445678899999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010063 261 ---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 337 (519)
Q Consensus 261 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 337 (519)
+++|+.++++++.+.+... +.+....++..+|.++...|++++|+.++++++++..... +.+....++..+|.
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGN 231 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHH
Confidence 9999999999999887764 4567788999999999999999999999999999987752 34556778999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063 338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417 (519)
Q Consensus 338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 417 (519)
++...|++++|+.++++++.+.... .++.....++..+|.++...|++++|..++++++.+..... +.+....+
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~ 305 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTLLLARQL----KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRA 305 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHHH
Confidence 9999999999999999999998763 45666678889999999999999999999999999987763 45666788
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 418 LLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
+..+|.+|...|++++|..++++++.+..+
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 306 CWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999997654
No 11
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.97 E-value=7.5e-27 Score=221.80 Aligned_cols=354 Identities=12% Similarity=0.075 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH--HHHHHhcCChHHHH-----------H
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII--ALGYVYIGDLKFVQ-----------S 183 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~-----------~ 183 (519)
.+...++........+++++|..+.+++.+.... -..+++. ..++.+ .......++++.+. .
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~----~~~~~~~-~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~ 85 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQ----MEEDQDL-HLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD 85 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----SCCCHHH-HHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh----hccchHH-HHHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence 5566788888889999999999999998665432 1123332 233322 22223344555554 5
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHH
Q 010063 184 LLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263 (519)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 263 (519)
.+++....... .+.......++..|..+...|++++|+.++++++.+.+.. ++.+..+.++..+|.+|...|++++
T Consensus 86 ~~~~i~~~~~~--~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~ 161 (383)
T 3ulq_A 86 LLLEIDKKQAR--LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYF 161 (383)
T ss_dssp HHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCCC--chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55554332111 0001112345569999999999999999999999886653 4556788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 010063 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 343 (519)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 343 (519)
|+.++++++++.+... ...+..+.++.++|.+|...|++++|+.++++++++.++. .+.+..+.++.++|.+|...|
T Consensus 162 A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 162 SMDYARQAYEIYKEHE-AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHTCS-TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCC
Confidence 9999999999987753 1256778899999999999999999999999999998876 345667889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 010063 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 423 (519)
Q Consensus 344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 423 (519)
++++|+.++++++++.+.. .+.+....++.++|.++...|++++|..++++++.+..+. .++.....+..+|.
T Consensus 239 ~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEES----NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKS 311 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHT----TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Confidence 9999999999999998763 3335557889999999999999999999999999998876 34555555778999
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010063 424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (519)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 495 (519)
++...|++ ..+++++...++. ...+....++..+|.+|...|++++|..++++++++.+++...++
T Consensus 312 ~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~~e~ 377 (383)
T 3ulq_A 312 LYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVS 377 (383)
T ss_dssp HHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSSCCC
T ss_pred HHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhccch
Confidence 99999995 4555555555554 455777888999999999999999999999999999987766443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=9.1e-28 Score=239.13 Aligned_cols=339 Identities=16% Similarity=0.096 Sum_probs=272.7
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (519)
.....+...|..+...|++++|+..|++++.. .|..+.++..+|.+|...|++++|+..+++++...
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 89 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--- 89 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh----------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 34556888899999999999999999999988 67778899999999999999999999999988764
Q ss_pred CCCchHHHHHHHHHHHHHHccccHHHHHHHHH------------------------------------------------
Q 010063 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQ------------------------------------------------ 227 (519)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------------------------------------ 227 (519)
|....++..+|.++...|++++|+..|+
T Consensus 90 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 165 (537)
T 3fp2_A 90 ----PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165 (537)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred ----CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence 3344568889999999999999887663
Q ss_pred ------------------------------------------------------HHHHHHHHhc--CCCCH----HHHHH
Q 010063 228 ------------------------------------------------------RVINVLESRY--GKTSI----LLVTS 247 (519)
Q Consensus 228 ------------------------------------------------------~al~~~~~~~--~~~~~----~~~~~ 247 (519)
+++..+++.. .++++ ..+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 245 (537)
T 3fp2_A 166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA 245 (537)
T ss_dssp HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHH
Confidence 1222222211 12222 23567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327 (519)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 327 (519)
+..+|.++...|++++|+..++++++. .|. ..++..+|.++...|++++|+.+++++++. .|.
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~ 308 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------NPE 308 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CCC
Confidence 889999999999999999999999987 344 678999999999999999999999999985 345
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010063 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (519)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (519)
...++..+|.++...|++++|+..+++++.. .++.. .++..+|.++...|++++|+..+++++..
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 373 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-------NPENV---YPYIQLACLLYKQGKFTESEAFFNETKLK----- 373 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 5668999999999999999999999999987 23332 45688999999999999999999999885
Q ss_pred CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc----------CChHHHH
Q 010063 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL----------NRDKEAE 477 (519)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~ 477 (519)
.|....++..+|.++...|++++|+..|++++...... +........+..+|.++... |++++|+
T Consensus 374 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 374 ---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ--EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC--SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred ---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc--hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 23345678899999999999999999999999977543 22223344567889999999 9999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 478 KLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
.+|++++++. ++++ .++..+|.+|..+|++.
T Consensus 449 ~~~~~a~~~~-----p~~~-----~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 449 KLLTKACELD-----PRSE-----QAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHC-----TTCH-----HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhC-----CCCH-----HHHHHHHHHHHHhccHH
Confidence 9999999863 3333 45889999999999874
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6e-27 Score=231.86 Aligned_cols=344 Identities=14% Similarity=0.084 Sum_probs=278.9
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (519)
....++..|..++..|++++|+..|++++.. .| .+.++..+|.++...|++++|+..+++++...
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 69 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL----------KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK---- 69 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----------CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----------Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----
Confidence 4556889999999999999999999999987 34 37789999999999999999999999998764
Q ss_pred CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh-----------------------c----------------
Q 010063 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR-----------------------Y---------------- 237 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~---------------- 237 (519)
|....++..+|.++...|++++|+..|++++...... .
T Consensus 70 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 70 ---PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp ---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred ---hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 3444668999999999999999999999987642100 0
Q ss_pred --------CC------------------------CCHHHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHhc--C
Q 010063 238 --------GK------------------------TSILLVTSLLGMAKVLGS---IGRAKKAVEIYHRVITILELNR--G 280 (519)
Q Consensus 238 --------~~------------------------~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~--~ 280 (519)
.+ ..+.....+..+|.++.. .|++++|+..++++++..+... .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 00 001225667778887776 8999999999999999654433 2
Q ss_pred CCC----hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063 281 TES----ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (519)
Q Consensus 281 ~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (519)
+++ +....++..+|.++...|++++|+..++++++. .|. ..++..+|.++...|++++|+..+++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 222 667889999999999999999999999999985 244 7789999999999999999999999998
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010063 357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (519)
.. .+.. ..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.
T Consensus 298 ~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 298 KL-------DSNN---SSVYYHRGQMNFILQNYDQAGKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp TT-------CTTC---THHHHHHHHHHHHTTCTTHHHHHHHHHHHT--------CSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred hc-------CcCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 76 2333 235688999999999999999999999874 23334688899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcc-hhhHHHHHHHHHHHH--
Q 010063 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV-GKLFCFVLFGLVWFC-- 513 (519)
Q Consensus 437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-- 513 (519)
++++++.. .|....++..+|.++...|++++|..++++++++... ++.. .....+..+|.++..
T Consensus 360 ~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~ 426 (514)
T 2gw1_A 360 LFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK-----LDGIYVGIAPLVGKATLLTRNP 426 (514)
T ss_dssp HHHHHHHH--------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----SSSCSSCSHHHHHHHHHHHTSC
T ss_pred HHHHHHHH--------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc-----cchHHHHHHHHHHHHHHHhhhh
Confidence 99999874 2444567899999999999999999999999987632 2221 112458889999998
Q ss_pred -hhhcc
Q 010063 514 -LLLYK 518 (519)
Q Consensus 514 -lg~~k 518 (519)
+|++.
T Consensus 427 ~~~~~~ 432 (514)
T 2gw1_A 427 TVENFI 432 (514)
T ss_dssp CTTHHH
T ss_pred hcCCHH
Confidence 88764
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-27 Score=235.34 Aligned_cols=343 Identities=15% Similarity=0.051 Sum_probs=280.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC-
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD- 197 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 197 (519)
..+...+..+...|++++|+..++++++. .|....++..+|.++...|++++|+..|+++.........
T Consensus 40 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 109 (514)
T 2gw1_A 40 VFYSNLSACYVSVGDLKKVVEMSTKALEL----------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS 109 (514)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHhcc----------ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence 44778899999999999999999999988 7777889999999999999999999999988765420000
Q ss_pred -----------------------------------------------------------------------CchHHHHHH
Q 010063 198 -----------------------------------------------------------------------DEPLLDAIL 206 (519)
Q Consensus 198 -----------------------------------------------------------------------~~~~~~~~~ 206 (519)
..|.....+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (514)
T 2gw1_A 110 IEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189 (514)
T ss_dssp THHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHH
Confidence 001225567
Q ss_pred HHHHHHHHc---cccHHHHHHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063 207 LHMGSMYST---LENYEKSMLVYQRVINVLESRY--GKTS----ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 207 ~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (519)
..+|.++.. .|++++|+..+++++...+... .+++ +....++..+|.++...|++++|+..++++++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--- 266 (514)
T 2gw1_A 190 LMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--- 266 (514)
T ss_dssp HHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---
Confidence 778888776 8999999999999998654433 2232 667889999999999999999999999999987
Q ss_pred hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
.|. ..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..++++++
T Consensus 267 -----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 267 -----FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp -----CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred -----Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344 888999999999999999999999999874 344456889999999999999999999999988
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010063 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437 (519)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 437 (519)
. .+... .++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+.+
T Consensus 333 ~-------~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 333 L-------DPENI---FPYIQLACLAYRENKFDDCETLFSEAKRKF--------PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp T-------CSSCS---HHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h-------ChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6 23332 356889999999999999999999998752 33346788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh
Q 010063 438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYH---LNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCL 514 (519)
Q Consensus 438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 514 (519)
+++++...... +.......++..+|.++.. .|++++|..++++++++. +++ ..++..+|.+|..+
T Consensus 395 ~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~-----~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 395 YDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-----PRS-----EQAKIGLAQMKLQQ 462 (514)
T ss_dssp HHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-----TTC-----HHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-----ccc-----HHHHHHHHHHHHHh
Confidence 99999865332 1112224578999999999 999999999999999853 333 24588999999999
Q ss_pred hhcc
Q 010063 515 LLYK 518 (519)
Q Consensus 515 g~~k 518 (519)
|+++
T Consensus 463 g~~~ 466 (514)
T 2gw1_A 463 EDID 466 (514)
T ss_dssp TCHH
T ss_pred cCHH
Confidence 9874
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1e-26 Score=226.11 Aligned_cols=340 Identities=13% Similarity=0.059 Sum_probs=267.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
...+...+..+...|++++|+..++++++. .|....++..+|.+|...|++++|+..+++++... +
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~ 125 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQL----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN----P 125 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC----C
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C
Confidence 344777889999999999999999999998 67778899999999999999999999999988754 3
Q ss_pred CchHHHHH------------HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHH
Q 010063 198 DEPLLDAI------------LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265 (519)
Q Consensus 198 ~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 265 (519)
+.+....+ +..+|.++...|++++|+..+++++... |....++..+|.+|...|++++|+
T Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~ 197 (450)
T 2y4t_A 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--------VWDAELRELRAECFIKEGEPRKAI 197 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHCCCHHHHH
Confidence 33311122 3455888999999999999999998752 233567889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH---------HHHH
Q 010063 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM---------CSLA 336 (519)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~~la 336 (519)
..++++++. .|....++..+|.++...|++++|+..+++++.+ .++++.....+ ..+|
T Consensus 198 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~ 264 (450)
T 2y4t_A 198 SDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESA 264 (450)
T ss_dssp HHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 3445788999999999999999999999999875 22333322222 3449
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHH
Q 010063 337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT 416 (519)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 416 (519)
.++...|++++|+.+|+++++.. +.++......+..+|.++...|++++|+..+++++.+ .|....
T Consensus 265 ~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~ 330 (450)
T 2y4t_A 265 EELIRDGRYTDATSKYESVMKTE------PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVN 330 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC------CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHH
Confidence 99999999999999999999862 2233334567899999999999999999999999875 344557
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH------------HHHhcC-----ChHHHHHH
Q 010063 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI------------TLYHLN-----RDKEAEKL 479 (519)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~------------~~~~~g-----~~~~A~~~ 479 (519)
++..+|.++...|++++|+..+++++++ .|....++..++. .|...| +.+++.+.
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~ 402 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence 8999999999999999999999999983 3445566677774 355555 56677888
Q ss_pred HHH-HHHHHHHhcCCCCCcch----hhHHHHHHHHHHHHhhhcc
Q 010063 480 VLE-ALYIREIAFGKDSLPVG----KLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 480 ~~~-a~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~lg~~k 518 (519)
|++ ++... ++..+... ....+..++.+|..+||..
T Consensus 403 y~~~~l~~~----pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 403 YRKLALQWH----PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp HHHHHHHSC----GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHhC----CCCCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 876 44422 12222211 2357889999999999865
No 16
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.1e-26 Score=231.18 Aligned_cols=334 Identities=12% Similarity=0.045 Sum_probs=262.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH-----------------------------------------------
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKE----------------------------------------------- 150 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~----------------------------------------------- 150 (519)
...+...+..+...|++++|+..|+++++....
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 455778889999999999999999998764110
Q ss_pred --------------HHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHcc
Q 010063 151 --------------QINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL 216 (519)
Q Consensus 151 --------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (519)
.+......+....++..+|.+|...|++++|+..|++++... ++ ...++..++.++...
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID----PY---NLDVYPLHLASLHES 352 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT---CCTTHHHHHHHHHHH
T ss_pred HHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC----cc---cHHHHHHHHHHHHHh
Confidence 000001113455667777888888888888888888777543 11 122366777788888
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 010063 217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL 296 (519)
Q Consensus 217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 296 (519)
|++++|+..+++++.. .|....++..+|.+|...|++++|+.+|++++++ .|....++..+|.+
T Consensus 353 g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHS 416 (597)
T ss_dssp TCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 8888888888877643 1233567888999999999999999999999886 45567789999999
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHH
Q 010063 297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376 (519)
Q Consensus 297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 376 (519)
|...|++++|+..|+++++. .|....++..+|.+|...|++++|+.+|+++++. .++++ .++
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~---~~~ 478 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARL--------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-------FQYDP---LLL 478 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHT--------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCCCH---HHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCh---HHH
Confidence 99999999999999999874 3444567889999999999999999999999886 33333 457
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 010063 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (519)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (519)
..+|.++...|++++|+++|+++++...+. +..|. ...++..+|.+|...|++++|+..++++++. .|.
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~ 548 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STN 548 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCC
Confidence 899999999999999999999999986553 23444 3788999999999999999999999999985 255
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 010063 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWF 512 (519)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 512 (519)
...++..+|.+|...|++++|..+|++++++. ++++ ..+..|+.+|.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~-----~~~~~l~~~~~ 595 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAIS-----PNEI-----MASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-----HHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCh-----HHHHHHHHHHh
Confidence 56788999999999999999999999999864 4443 34777887764
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=5.9e-26 Score=222.22 Aligned_cols=347 Identities=14% Similarity=0.092 Sum_probs=256.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC-Cc
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD-DE 199 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~ 199 (519)
....|..+...|++++|++.|++++++.+.... ....+..+.++.++|.+|..+|++++|+.++++++.+...... ..
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 445788889999999999999999998776532 2335667888999999999999999999999999998776432 33
Q ss_pred hHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHH
Q 010063 200 PLLDAILLHMGSMYST--LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV---LGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~ 274 (519)
+..+.++..+|.++.. .+++++|+.+|++++++ .++++. ++..++.+ +...++.++|++.+++++++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~---~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPE---FTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 4455667888877655 46899999999999987 344444 44455554 45668889999999999987
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 010063 275 LELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350 (519)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 350 (519)
.|....++..+|..+.. .|++++|..++++++.. +|....++.++|.+|...|++++|+.
T Consensus 205 --------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 205 --------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp --------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHcCchHHHHH
Confidence 45556677777766554 56788999999999875 45666788999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC-------------------ChHHHHHHHHHHHHHHHHhhCCCC
Q 010063 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-------------------RGQEGRELLEECLLITEKYKGKEH 411 (519)
Q Consensus 351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------------------~~~~A~~~~~~al~~~~~~~~~~~ 411 (519)
.++++++. .|+. ..++.++|.+|...+ .+++|+..+++++.+ +
T Consensus 269 ~~~~al~~-------~p~~---~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~ 330 (472)
T 4g1t_A 269 LLKKALEY-------IPNN---AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--------N 330 (472)
T ss_dssp HHHHHHHH-------STTC---HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHh-------CCCh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--------C
Confidence 99999987 3333 445678888876432 244555555555543 3
Q ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH-HHhcCChHHHHHHHHHHHHHH---
Q 010063 412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-LYHLNRDKEAEKLVLEALYIR--- 487 (519)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~--- 487 (519)
|....++..+|.+|...|++++|+.+|++++.+ .+++......+..+|.+ +...|++++|+.+|++++++.
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 444567889999999999999999999999973 22323333445666655 457899999999999998752
Q ss_pred --------------HHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 488 --------------EIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 488 --------------~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
++... .+|.. +.++.+||.+|..+|++.
T Consensus 406 ~~~~~~~~~l~~~~~~~l~-~~p~~--~~~~~~LG~~~~~~g~~~ 447 (472)
T 4g1t_A 406 REKEKMKDKLQKIAKMRLS-KNGAD--SEALHVLAFLQELNEKMQ 447 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HCC-C--TTHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCCC--HHHHHHHHHHHHHcCCHH
Confidence 11111 12322 356899999999999985
No 18
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.9e-26 Score=231.40 Aligned_cols=344 Identities=13% Similarity=0.101 Sum_probs=246.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHH------HHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhh
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAV------KEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (519)
....+..+...|++++|+..|++..... ..........+..+.+++.+|.+|...|++++|+..|++++.....
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 232 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK 232 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch
Confidence 4445555566666666666655311100 0000000112456889999999999999999999999998765311
Q ss_pred cC----------------------------------------------------------------CCchHHHHHHHHHH
Q 010063 195 LK----------------------------------------------------------------DDEPLLDAILLHMG 210 (519)
Q Consensus 195 ~~----------------------------------------------------------------~~~~~~~~~~~~l~ 210 (519)
.. ...+....++..+|
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 312 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKA 312 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHH
Confidence 00 00011223355566
Q ss_pred HHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 010063 211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL 290 (519)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 290 (519)
..+...|++++|+.+|++++... ++ ...++..++.++...|++++|...++++++. .|....++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~ 376 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEID-----PY---NLDVYPLHLASLHESGEKNKLYLISNDLVDR--------HPEKAVTW 376 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TT---CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcC-----cc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CcccHHHH
Confidence 66666666666666666665431 11 1334555666666666666666666666543 34557788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCch
Q 010063 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370 (519)
Q Consensus 291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 370 (519)
..+|.+|...|++++|+.+|++++++ .|....++..++.++...|++++|++.|+++++. .+++
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~- 440 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-------FQGT- 440 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TTTC-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc-
Confidence 89999999999999999999999875 3455568899999999999999999999999875 2333
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (519)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (519)
..++..++.+|...|++++|+++|+++++.. |....++..+|.+|...|++++|+.+|+++++...+.
T Consensus 441 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-- 508 (597)
T 2xpi_A 441 --HLPYLFLGMQHMQLGNILLANEYLQSSYALF--------QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT-- 508 (597)
T ss_dssp --SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--
T ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--
Confidence 2456889999999999999999999998752 2334678999999999999999999999999976553
Q ss_pred CCCcch-hHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 451 PDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 451 ~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
+.+|.. ..++..+|.+|...|++++|+..+++++++. ++++ .++..+|.+|...|+++
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~-----~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-----TNDA-----NVHTAIALVYLHKKIPG 567 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SCCH-----HHHHHHHHHHHHTTCHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCh-----HHHHHHHHHHHHhCCHH
Confidence 234553 7889999999999999999999999999863 3333 55889999999999874
No 19
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.96 E-value=1.9e-25 Score=211.65 Aligned_cols=353 Identities=15% Similarity=0.100 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH--HHhcCChHHHH---------HHH
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALG--YVYIGDLKFVQ---------SLL 185 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~---------~~~ 185 (519)
.+..+++........+++++|..+.+++...... -..+.. ...++.+-.. ....+++..+. ..+
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~----~~~~~~-~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQ----MEEDQD-LLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGG----BCCCHH-HHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----hcccHH-HHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 4555666667778999999999999987665322 111222 2233333222 22234444444 555
Q ss_pred HHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHH
Q 010063 186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265 (519)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 265 (519)
+........ .+.......++..|..+...|++++|+.++++++.+.... ++.+..+.++..+|.+|...|++++|+
T Consensus 86 ~~i~~~~~~--~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~ 161 (378)
T 3q15_A 86 ETIETPQKK--LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSM 161 (378)
T ss_dssp HHHHGGGHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhccCCC--CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 554332211 1112233356788999999999999999999999887654 445778999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 010063 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 345 (519)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 345 (519)
.++++++++.+...+ ..+..+.++.++|.+|...|++++|+.++++++++.+.. ++.+..+.++.++|.+|...|++
T Consensus 162 ~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 162 YHILQALDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCH
Confidence 999999999876531 134678899999999999999999999999999998775 23456778999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 010063 346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425 (519)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 425 (519)
++|+.++++++++.+.. .++....++.++|.++...|++++|..++++++++..+. ..+.....+..++.++
T Consensus 239 ~~A~~~~~~al~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly 310 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREK-----VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVY 310 (378)
T ss_dssp HHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Confidence 99999999999988764 233337788999999999999999999999999987654 2344445678889999
Q ss_pred HhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010063 426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (519)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 495 (519)
...|+. ..+.+++...++. ...+.....+..+|.+|...|++++|..+|++++++.+++...++
T Consensus 311 ~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 374 (378)
T 3q15_A 311 KETVDE----RKIHDLLSYFEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC 374 (378)
T ss_dssp SSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hCCCcH----HHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccch
Confidence 999983 3334444444332 345667778889999999999999999999999999988766443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=2.1e-27 Score=224.47 Aligned_cols=313 Identities=17% Similarity=0.148 Sum_probs=244.4
Q ss_pred HHHHcCChhHHHH-HHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063 127 SMIMMGNKNDAID-LLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA 204 (519)
Q Consensus 127 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 204 (519)
.+...|++++|+. .+++++.. .+..| .....++.+|.++...|++++|+..+++++... |....
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~ 99 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQF-------EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHME 99 (368)
T ss_dssp ------------CHHHHCCCCC-------CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhc-------CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHH
Confidence 4456789999998 88888765 22222 235678899999999999999999999998764 33455
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (519)
++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+..+++++.... +.+
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~ 166 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELK--------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-----AYA 166 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-----TTG
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CcH
Confidence 68999999999999999999999999862 33366889999999999999999999999998631 111
Q ss_pred hhH-------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHH
Q 010063 285 DLV-------------LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR--VGMAMCSLAHAKCANGNAEEAV 349 (519)
Q Consensus 285 ~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~ 349 (519)
... ..+..++.++ ..|++++|+.+++++++. .|. ...++..+|.++...|++++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp GGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 111 1122566666 899999999999999986 233 5668899999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc
Q 010063 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 429 (519)
Q Consensus 350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 429 (519)
.++++++.. .++. ..++..+|.++...|++++|+..+++++.+ .|....++..+|.+|...|
T Consensus 238 ~~~~~al~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 238 DCFTAALSV-------RPND---YLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-------CcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCC
Confidence 999999987 2333 346789999999999999999999999885 3445678999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcC---CCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCC
Q 010063 430 NFVEAERLLRICLDIMTKTVG---PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (519)
Q Consensus 430 ~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 493 (519)
++++|+.+|++++.+.....+ ..++....++..+|.+|..+|++++|...++++++...+.++.
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 366 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGL 366 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCC
Confidence 999999999999997654322 1234557889999999999999999999999999999887764
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.6e-26 Score=213.41 Aligned_cols=297 Identities=14% Similarity=0.133 Sum_probs=247.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (519)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (519)
.++..+..++..|++++|+..++++++. .|....++..++.++...|++++|...+++++...
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------- 86 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEK----------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY------- 86 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------
Confidence 3677888999999999999999999987 66667788889999999999999999999998764
Q ss_pred hHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063 200 PLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (519)
|....++..+|.++...| ++++|+.++++++... |....++..+|.++...|++++|+..++++++.
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 154 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---- 154 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 333456889999999999 9999999999998752 333567889999999999999999999999987
Q ss_pred cCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
.|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 155 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 155 ----MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp ----TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444567888999999999999999999999874 4555678999999999999999999999999998
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHH
Q 010063 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (519)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (519)
...... ....+....++..+|.++...|++++|+.++++++.+. |....++..+|.++...|++++|..++
T Consensus 223 ~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 223 IKAIGN-EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HTTTSC-SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhccc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 765311 11112334567899999999999999999999999862 334568899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHHH-hcCChH
Q 010063 439 RICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDK 474 (519)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~ 474 (519)
++++++ .|....++..++.++. ..|+.+
T Consensus 294 ~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 294 HTALGL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 999873 4566678889999884 556543
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=2.3e-25 Score=221.73 Aligned_cols=314 Identities=14% Similarity=0.118 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHH----------
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMM---------- 188 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------- 188 (519)
..+...+..+...|++++|+..++++++. .|..+.++..+|.++...|++++|+..++.+
T Consensus 60 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 129 (537)
T 3fp2_A 60 VFYSNISACYISTGDLEKVIEFTTKALEI----------KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGAS 129 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHH
Confidence 44778899999999999999999999998 7778889999999999999999998877321
Q ss_pred --------------------------------------------------------------------------------
Q 010063 189 -------------------------------------------------------------------------------- 188 (519)
Q Consensus 189 -------------------------------------------------------------------------------- 188 (519)
T Consensus 130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (537)
T 3fp2_A 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209 (537)
T ss_dssp --CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred ------------Hhhhhh---cCCCchH----HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010063 189 ------------SGIVDS---LKDDEPL----LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249 (519)
Q Consensus 189 ------------~~~~~~---~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 249 (519)
....+. ..++++. .+.++..+|.++...|++++|+..+++++.. . |. ..++.
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~---~~-~~~~~ 280 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----H---PT-PNSYI 280 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---CC-HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-----C---CC-chHHH
Confidence 111111 1122221 2456888999999999999999999999886 1 22 56788
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (519)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (519)
.+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..+++++.. .|...
T Consensus 281 ~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~ 344 (537)
T 3fp2_A 281 FLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENV 344 (537)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 9999999999999999999999987 4556788999999999999999999999999985 23444
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (519)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (519)
.++..+|.++...|++++|+.+++++++. .++.+ .++..+|.++...|++++|+..+++++.......
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-- 412 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLK-------FPTLP---EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE-- 412 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch--
Confidence 67889999999999999999999999987 23333 3568899999999999999999999999875532
Q ss_pred CChhHHHHHHHHHHHHHhc----------cCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063 410 EHPSFVTHLLNLAASYSRS----------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479 (519)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 479 (519)
........+..+|.++... |++++|+.+|++++.. +|....++..+|.+|...|++++|..+
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 2222334567788899998 9999999999999985 355567889999999999999999999
Q ss_pred HHHHHHHH
Q 010063 480 VLEALYIR 487 (519)
Q Consensus 480 ~~~a~~~~ 487 (519)
|++++++.
T Consensus 485 ~~~al~~~ 492 (537)
T 3fp2_A 485 FEDSAILA 492 (537)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99999875
No 23
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.95 E-value=1.7e-24 Score=205.63 Aligned_cols=273 Identities=12% Similarity=0.066 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH
Q 010063 163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI 242 (519)
Q Consensus 163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 242 (519)
..++..|..+...|++++|+..+++++.+.... ++.+..+.++..+|.+|...|++++|+.++++++++.+.. +...+
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~ 181 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchH
Confidence 345669999999999999999999999987764 4556788889999999999999999999999999998775 22256
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (519)
..+.++.++|.+|...|++++|+.++++++++.+... +.+..+.++.++|.+|..+|++++|+.++++++++.+...
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~- 258 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN- 258 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-
Confidence 7889999999999999999999999999999988763 5667788999999999999999999999999999987752
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
+.|....++.++|.++...|++++|+.++++++++..+. .++.. ...+..++.++...|++ ..+++++..
T Consensus 259 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~----~~~~~al~~ 328 (383)
T 3ulq_A 259 -ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA----GDVIY-LSEFEFLKSLYLSGPDE----EAIQGFFDF 328 (383)
T ss_dssp -CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHH-HHHHHHHHHHHTSSCCH----HHHHHHHHH
T ss_pred -cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----CCHHH-HHHHHHHHHHHhCCCcH----HHHHHHHHH
Confidence 227778899999999999999999999999999998764 23333 33367899999999995 445555555
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452 (519)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 452 (519)
.++. ...+....++..+|.+|...|++++|..++++++.+.+++...+
T Consensus 329 ~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~~e 376 (383)
T 3ulq_A 329 LESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGV 376 (383)
T ss_dssp HHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSSCC
T ss_pred HHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 5544 35677788899999999999999999999999999987765443
No 24
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-25 Score=206.43 Aligned_cols=285 Identities=21% Similarity=0.246 Sum_probs=235.1
Q ss_pred hcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010063 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (519)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (519)
..+.++|....++..+|.++...|++++|+.++++++++.....+++.+....++..+|.++...|++++|+.+++++++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999998887777888999999999999999999999999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010063 274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK 353 (519)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (519)
+.+...+.+.+....++..+|.++...|++++|+.++++++++.+...+.+++....++.++|.++...|++++|+.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99888777788899999999999999999999999999999999888888889999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh-CCCChh------HHHHHHHHHHHHH
Q 010063 354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-GKEHPS------FVTHLLNLAASYS 426 (519)
Q Consensus 354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~------~~~~~~~la~~~~ 426 (519)
++++...+. .+++++....++..+|.++...|++++|+.++++++.+..... +...+. ....+..++..+.
T Consensus 178 ~a~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (311)
T 3nf1_A 178 RALEIYQTK--LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255 (311)
T ss_dssp HHHHHHHHT--SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-----
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchh
Confidence 999998764 3456777788899999999999999999999999998765421 111111 2233344445555
Q ss_pred hccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (519)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (519)
..+.+.+|...++++.. .+|....++..+|.+|...|++++|..++++++++..
T Consensus 256 ~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 256 DGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 56666667777776654 5688889999999999999999999999999998763
No 25
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=3.7e-25 Score=208.15 Aligned_cols=297 Identities=13% Similarity=0.121 Sum_probs=243.1
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (519)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (519)
.+..+..+|..+...|++++|+..+++++... |....++..+|.++...|++++|+..++++++..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------- 67 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK------- 67 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------
Confidence 35678999999999999999999999998764 3334568999999999999999999999999862
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh---hhHHHHHHH------------HHHHHhCCCHHH
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA---DLVLPLFSL------------GSLFIKEGKAVD 305 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~ 305 (519)
|....++..+|.++...|++++|+..++++++. .| ....++..+ |.++...|++++
T Consensus 68 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 68 -MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 333577899999999999999999999999875 33 444455444 799999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH
Q 010063 306 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385 (519)
Q Consensus 306 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (519)
|+..++++++. .|....++..+|.++...|++++|+..+++++.. .++. ..++..+|.++..
T Consensus 139 A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~ 200 (359)
T 3ieg_A 139 AITFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL-------KSDN---TEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CSCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHH
Confidence 99999999985 3455578899999999999999999999999876 3333 3467899999999
Q ss_pred cCChHHHHHHHHHHHHHHHHhhCCCChhHHHH---------HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc-
Q 010063 386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTH---------LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS- 455 (519)
Q Consensus 386 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 455 (519)
.|++++|+..+++++... ++++..... ...+|.++...|++++|+..+++++... ++++.
T Consensus 201 ~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~ 270 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEY 270 (359)
T ss_dssp HTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHH
T ss_pred cCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHH
Confidence 999999999999998753 333333222 3355899999999999999999999852 33332
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
....+..+|.++...|++++|+.++++++++. ++++ ..+..+|.++..+|++.
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQME-----PDNV-----NALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-----HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----cccH-----HHHHHHHHHHHHcCCHH
Confidence 23457789999999999999999999999862 3333 45889999999999874
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=9.1e-27 Score=219.88 Aligned_cols=293 Identities=16% Similarity=0.089 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC
Q 010063 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239 (519)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 239 (519)
..+..++.+|..+...|++++|+..+++++... |....++..+|.++...|++++|+..|++++++.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------ 129 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ------ 129 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence 445668999999999999999999999998875 3345679999999999999999999999999862
Q ss_pred CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA--DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
|....++..+|.+|...|++++|+.++++++++.......... .....+..+|.++...|++++|+.++++++++.
T Consensus 130 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 130 --PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred --CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 3336789999999999999999999999999974432211000 123445667999999999999999999999862
Q ss_pred HHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHH
Q 010063 318 TKVYGENDGR--VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL 395 (519)
Q Consensus 318 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 395 (519)
|. ...++.++|.++...|++++|+.+++++++. .++. ..++.++|.++...|++++|+..
T Consensus 208 --------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~---~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 208 --------GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-------RPED---YSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp --------CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 33 4568899999999999999999999999987 2333 44678999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcc----hhHHHHHHHHHHHhcC
Q 010063 396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS----ISFPMLHLGITLYHLN 471 (519)
Q Consensus 396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g 471 (519)
|++++.+ +|....++..+|.+|...|++++|+.+|++++.+.....++.++. ...++..++.++..+|
T Consensus 270 ~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 270 YTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 9999986 345577899999999999999999999999999876654433222 3567899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCC
Q 010063 472 RDKEAEKLVLEALYIREIAFGK 493 (519)
Q Consensus 472 ~~~~A~~~~~~a~~~~~~~~~~ 493 (519)
+.+.|....++.++..++.++.
T Consensus 342 ~~~~a~~~~~~~l~~~~~~~~~ 363 (365)
T 4eqf_A 342 QPELFQAANLGDLDVLLRAFNL 363 (365)
T ss_dssp CHHHHHHHHTTCCGGGTTTTTC
T ss_pred cHHHHHHHHHhhHHHHHHhcCC
Confidence 9999999988877776655543
No 27
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=216.25 Aligned_cols=300 Identities=14% Similarity=0.134 Sum_probs=245.8
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 238 (519)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 238 (519)
+..+.++..+|..+...|++++|+..+++++... |....++..++.++...|++++|+..++++++..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----- 86 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY----- 86 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----
Confidence 3345577889999999999999999999988764 2223346778889999999999999999998852
Q ss_pred CCCHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 239 KTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
|....++..+|.++...| ++++|+.+++++++. .|....++..+|.++...|++++|+..++++++..
T Consensus 87 ---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 155 (330)
T 3hym_B 87 ---PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155 (330)
T ss_dssp ---TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred ---cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 333567889999999999 999999999999875 45567789999999999999999999999999863
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (519)
|....++..+|.++...|++++|+.+++++++. .++. ..++..+|.++...|++++|+..++
T Consensus 156 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 156 --------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-------APED---PFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp --------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHcccHHHHHHHHH
Confidence 333446777999999999999999999999876 2333 3567899999999999999999999
Q ss_pred HHHHHHHHhhCCCC-hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHH
Q 010063 398 ECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476 (519)
Q Consensus 398 ~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 476 (519)
+++.+......... +....++..+|.++...|++++|+.++++++.+ .|....++..+|.++...|++++|
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHH
Confidence 99998765433221 444578899999999999999999999999985 244567889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH-HHhhhc
Q 010063 477 EKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVW-FCLLLY 517 (519)
Q Consensus 477 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~lg~~ 517 (519)
..++++++++. ++++ ..+..+|.++ ..+|+.
T Consensus 290 ~~~~~~al~~~-----p~~~-----~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 290 VDYFHTALGLR-----RDDT-----FSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHTTTTTC-----SCCH-----HHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHccC-----CCch-----HHHHHHHHHHHHHhCch
Confidence 99999998743 3333 4477889988 555553
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=3.8e-26 Score=215.63 Aligned_cols=286 Identities=15% Similarity=0.042 Sum_probs=226.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
++..+..+...|++++|+.+|+++++. .|..+.++..+|.++...|++++|+..+++++... |
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p 130 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQ----------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------P 130 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------C
Confidence 677899999999999999999999998 67778899999999999999999999999998874 3
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI--LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (519)
....++..+|.+|...|++++|+..+++++++.......... .....+..+|.++...|++++|+.+++++++.
T Consensus 131 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 206 (365)
T 4eqf_A 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---- 206 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh----
Confidence 345579999999999999999999999999875432111100 12344566799999999999999999999987
Q ss_pred cCCCChh--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063 279 RGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (519)
Q Consensus 279 ~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (519)
.|. ...++..+|.++...|++++|+.++++++++ .|....++.++|.++...|++++|+.++++++
T Consensus 207 ----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 207 ----NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp ----SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333 5678999999999999999999999999986 35556689999999999999999999999999
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh----HHHHHHHHHHHHHhccCHH
Q 010063 357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS----FVTHLLNLAASYSRSKNFV 432 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~ 432 (519)
+. .|+. ..++.++|.++...|++++|+.+|++++.+.....++.++. ...++..++.++...|+.+
T Consensus 275 ~~-------~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 275 EI-------QPGF---IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HH-------CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred hc-------CCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 87 2333 45678999999999999999999999999886654332221 3578899999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010063 433 EAERLLRICLDIMTKTV 449 (519)
Q Consensus 433 ~A~~~~~~al~~~~~~~ 449 (519)
.|....++.+....+.+
T Consensus 345 ~a~~~~~~~l~~~~~~~ 361 (365)
T 4eqf_A 345 LFQAANLGDLDVLLRAF 361 (365)
T ss_dssp HHHHHHTTCCGGGTTTT
T ss_pred HHHHHHHhhHHHHHHhc
Confidence 99988887666554433
No 29
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=7.6e-25 Score=201.67 Aligned_cols=283 Identities=21% Similarity=0.273 Sum_probs=233.6
Q ss_pred CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC-CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063 155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK-DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (519)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (519)
+.++|..+.++..+|.++...|++++|+.++++++.+..... .+.+....++..+|.++...|++++|+.++++++.+.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 556888999999999999999999999999999998876542 3567888889999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010063 234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (519)
Q Consensus 234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (519)
+...+.+++....++..+|.++...|++++|+.++++++++.+...+.+++....++..+|.++...|++++|+.+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88877888999999999999999999999999999999999988877778889999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC-----CCCchHHHHHHHHHHHHHHHcCC
Q 010063 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-----SLDDSIMENMRIDLAELLHIVGR 388 (519)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~ 388 (519)
+++.+...+++++....++..+|.++...|++++|+.+++++++........ ..........+..++..+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 9999888777889999999999999999999999999999999886543110 01111123334445555666677
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
+.+|...++++.. .++....++..+|.+|...|++++|..++++++++.
T Consensus 260 ~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 260 FGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp SCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 7777777777654 568888999999999999999999999999999874
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=4.5e-25 Score=208.48 Aligned_cols=281 Identities=16% Similarity=0.095 Sum_probs=233.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
++..+..+...|++++|+..++++++. .|..+.++..+|.++...|++++|+..+++++... |
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~ 129 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQ----------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------P 129 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-------C
Confidence 667899999999999999999999987 67778899999999999999999999999998875 3
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHH-------------HHHHHHHHHHHhhcCCHHHHHHH
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL-------------VTSLLGMAKVLGSIGRAKKAVEI 267 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------------~~~~~~la~~~~~~g~~~~A~~~ 267 (519)
....++..+|.++...|++++|+..+++++.... +.+.. ......++.++ ..|++++|+.+
T Consensus 130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~ 203 (368)
T 1fch_A 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTP-----AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKEL 203 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-----TTGGGCC---------------CTTHHHH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHH
Confidence 3445689999999999999999999999987532 21111 11122466666 89999999999
Q ss_pred HHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 010063 268 YHRVITILELNRGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 345 (519)
Q Consensus 268 ~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 345 (519)
++++++. .|. ...++..+|.++...|++++|+.++++++.+ .|....++.++|.++...|++
T Consensus 204 ~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 204 FLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHcCCH
Confidence 9999987 333 5788999999999999999999999999986 345566899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC---CCChhHHHHHHHHH
Q 010063 346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPSFVTHLLNLA 422 (519)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la 422 (519)
++|+..++++++. .++. ..++..+|.++...|++++|+.++++++.+.....+ ..++....++..+|
T Consensus 268 ~~A~~~~~~al~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (368)
T 1fch_A 268 EEAVAAYRRALEL-------QPGY---IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337 (368)
T ss_dssp HHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence 9999999999987 2333 356789999999999999999999999998754321 11233467899999
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063 423 ASYSRSKNFVEAERLLRICLDIMTKTVG 450 (519)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (519)
.++...|++++|..+++++++.+.+.++
T Consensus 338 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 338 LALSMLGQSDAYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred HHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence 9999999999999999999998877654
No 31
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.94 E-value=3.2e-23 Score=196.30 Aligned_cols=271 Identities=13% Similarity=0.114 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (519)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (519)
...++..|..+...|++++|+..+++++.+.... ++.+..+.++..+|.+|...|++++|+.++++++++..... ...
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~ 178 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LYS 178 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-TCH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-Cch
Confidence 3467789999999999999999999999988764 45578888999999999999999999999999999987641 123
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
+..+.++.++|.+|...|++++|+.++++++++.+... +.+..+.++.++|.+|...|++++|+.++++++++.+..
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~- 255 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK- 255 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-
Confidence 56788999999999999999999999999999987763 445677899999999999999999999999999998876
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (519)
.+|....++.++|.++...|++++|+.++++++++..+. .++.. ...+..++.++...|+. ..+.+++.
T Consensus 256 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~-~~~~~~l~~ly~~~~~~----~~~~~al~ 324 (378)
T 3q15_A 256 --VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR----SHKFY-KELFLFLQAVYKETVDE----RKIHDLLS 324 (378)
T ss_dssp --CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT----CCSCH-HHHHHHHHHHHSSSCCH----HHHHHHHH
T ss_pred --CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----CCHHH-HHHHHHHHHHHhCCCcH----HHHHHHHH
Confidence 456668899999999999999999999999999986542 22222 33457788888888883 33344444
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (519)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (519)
..++. ...+.....+..+|.+|...|++++|..+|++++++.+++..
T Consensus 325 ~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 325 YFEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 44332 345667788889999999999999999999999998877643
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.8e-24 Score=211.59 Aligned_cols=310 Identities=11% Similarity=-0.002 Sum_probs=232.8
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC--CCchHHHHHHHH
Q 010063 131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK--DDEPLLDAILLH 208 (519)
Q Consensus 131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 208 (519)
.++.+.++..+++.+....+ ..+.+..+.+++.+|.++..+|++++|++.|++++++..... ..++....++.+
T Consensus 24 l~~~~~~l~~~e~~~~~~~~----~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~n 99 (472)
T 4g1t_A 24 LMEGENSLDDFEDKVFYRTE----FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGN 99 (472)
T ss_dssp TTTTCCCHHHHHHHHHHHTT----SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 34555566666555443221 223444567889999999999999999999999998865532 234666777999
Q ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 010063 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI--GRAKKAVEIYHRVITILELNRGTESADL 286 (519)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~ 286 (519)
+|.+|..+|++++|+.++++++++.+...++.++....++.++|.++... +++++|+.+|++++++ .|..
T Consensus 100 la~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~ 171 (472)
T 4g1t_A 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKN 171 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCC
Confidence 99999999999999999999999998876666666677888888777665 5799999999999987 3445
Q ss_pred HHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHH
Q 010063 287 VLPLFSLGSL---FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC----ANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 287 ~~~~~~la~~---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~ 359 (519)
..++..++.+ +...++.++|+..+++++++ +|....++.++|..+. ..|++++|..++++++..
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~- 242 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK- 242 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-
Confidence 5666666665 45578889999999999986 3444455666666554 456788999999999887
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc----------
Q 010063 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---------- 429 (519)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------- 429 (519)
.++. ..++.++|.+|...|++++|+..+++++++ +|....++..+|.+|...+
T Consensus 243 ------~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 243 ------APGV---TDVLRSAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp ------CSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ------CccH---HHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3333 345688999999999999999999999885 4556678888898886532
Q ss_pred ---------CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 430 ---------NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 430 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
.+++|+..+++++.+ +|....++..+|.+|...|++++|+.+|++++++
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEA--------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH--------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhc--------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 345566666666553 3555667889999999999999999999999874
No 33
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.94 E-value=1.7e-24 Score=196.34 Aligned_cols=270 Identities=20% Similarity=0.189 Sum_probs=227.3
Q ss_pred HHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010063 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292 (519)
Q Consensus 213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 292 (519)
....|++++|+.++++++++..+..+.+++....++..+|.++...|++++|+.++++++++.+...+++++....++.+
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 35689999999999999999999888888999999999999999999999999999999999998877788999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHH
Q 010063 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 372 (519)
Q Consensus 293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 372 (519)
+|.++...|++++|+.++++++.+.++..++++|....++.++|.++...|++++|+.+++++++..... .+++++..
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~ 168 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR--LGPDDPNV 168 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--SCTTCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCCHHH
Confidence 9999999999999999999999999999888889999999999999999999999999999999998764 45667778
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCC
Q 010063 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 451 (519)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (519)
..++.++|.++...|++++|+.++++++.+..... +...+.....+..++..+...+....+.. +.++....+. .+.
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~ 246 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKA-CKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------C-CCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHh-cCC
Confidence 88999999999999999999999999999865532 22344445566677777776666555444 4444443333 355
Q ss_pred CCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
.+|....++..+|.+|..+|++++|..++++++++
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67888999999999999999999999999999875
No 34
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.93 E-value=5.6e-24 Score=192.89 Aligned_cols=270 Identities=20% Similarity=0.229 Sum_probs=224.0
Q ss_pred HHhcCChHHHHHHHHHHHhhhhhc-CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010063 172 YVYIGDLKFVQSLLDMMSGIVDSL-KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (519)
Q Consensus 172 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (519)
....|++++|+.++++++...... +.++|....++..+|.++...|++++|+.++++++.+.+...+++++....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 346899999999999999988664 3456888899999999999999999999999999999998888888999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (519)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (519)
+|.++...|++++|+.++++++++.++..++++|....++.++|.++...|++++|+.++++++++.+...+++++....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999999999999888888899999999999999999999999999999999999988888899999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (519)
++.++|.++...|++++|+.+++++++....... +...+.....+..++..+...+....+.. +.++....... +..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~ 247 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF-GSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKAC-KVD 247 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS-SSCCSSCCCHHHHHHHHHHTTCCCCC-------------CC-CCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhc-CCC
Confidence 9999999999999999999999999998765421 22222223344566666666666555444 44444444333 456
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
++....++..+|.+|...|++++|..++++++++
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999874
No 35
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.93 E-value=1.5e-22 Score=191.51 Aligned_cols=313 Identities=11% Similarity=0.056 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (519)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (519)
...++..+|.++...|++++|...+++++.... ..+......++..+|.++...|++++|...+++++.+.... .+
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 88 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DV 88 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--Cc
Confidence 456778889999999999999999999987652 12223455678899999999999999999999999988764 23
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
......++.++|.++...|++++|+.++++++++.+...++.++....++.++|.++...|++++|..++++++.+....
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 34556778899999999999999999999999998887655557778889999999999999999999999999986543
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010063 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (519)
.++....++.++|.++...|++++|..++++++.+.... +............++.++...|++++|..++++++
T Consensus 169 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 169 ---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp ---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 223355688899999999999999999999999886442 11111222222345667889999999999999887
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHH
Q 010063 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (519)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (519)
.... .........+..+|.++...|++++|...+++++...... +..+....++..+|.++...|++++|...+
T Consensus 243 ~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 243 KPEF----ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp CCCC----TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCC----CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5321 1112223356789999999999999999999999987763 222345567889999999999999999999
Q ss_pred HHHHHHHHH
Q 010063 481 LEALYIREI 489 (519)
Q Consensus 481 ~~a~~~~~~ 489 (519)
++++.+...
T Consensus 317 ~~al~~~~~ 325 (373)
T 1hz4_A 317 LDALKLANR 325 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999998864
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=1.6e-24 Score=201.12 Aligned_cols=286 Identities=14% Similarity=0.088 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC
Q 010063 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239 (519)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 239 (519)
.....+..+|..+...|++++|+..+++++... |....++..+|.++...|++++|+..++++++..
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------ 85 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------ 85 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Confidence 455678899999999999999999999998764 3344568899999999999999999999998862
Q ss_pred CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH--------------HH-HHHhCCCHH
Q 010063 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL--------------GS-LFIKEGKAV 304 (519)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~ 304 (519)
|....++..+|.++...|++++|+..++++++.. |.....+..+ +. ++...|+++
T Consensus 86 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 86 --PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--------PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--------TTTTTC--------------------CCTTSHHHHH
T ss_pred --cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH
Confidence 2336678899999999999999999999998762 2222222222 44 588889999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 010063 305 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 384 (519)
Q Consensus 305 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~ 384 (519)
+|+.+++++++. .|....++..+|.++...|++++|+.+++++++. .++. ..++..+|.++.
T Consensus 156 ~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~l~~~~~ 217 (327)
T 3cv0_A 156 ECRTLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-------RPDD---AQLWNKLGATLA 217 (327)
T ss_dssp HHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCc---HHHHHHHHHHHH
Confidence 999999999985 3445578899999999999999999999999987 2333 346789999999
Q ss_pred HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCC----cchhHHH
Q 010063 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD----QSISFPM 460 (519)
Q Consensus 385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~ 460 (519)
..|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++.+.....+... .....++
T Consensus 218 ~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW 289 (327)
T ss_dssp HTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence 999999999999999885 2344568889999999999999999999999986532111111 1156788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010063 461 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494 (519)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 494 (519)
..+|.++...|++++|...++++++...+.++.+
T Consensus 290 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 323 (327)
T 3cv0_A 290 DFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQ 323 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTSS
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhHH
Confidence 9999999999999999999999999988776643
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=4.3e-24 Score=198.15 Aligned_cols=282 Identities=12% Similarity=0.039 Sum_probs=229.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
++..+..+...|++++|+.+++++++. .|..+.++..+|.++...|++++|+..+++++... |
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~ 86 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQA----------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------P 86 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------c
Confidence 677888999999999999999999987 67778899999999999999999999999998874 3
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH----------HHHHH-HH-HHhhcCCHHHHHHHH
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT----------SLLGM-AK-VLGSIGRAKKAVEIY 268 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------~~~~l-a~-~~~~~g~~~~A~~~~ 268 (519)
....++..+|.++...|++++|+..+++++.... ....... ....+ +. ++...|++++|+.++
T Consensus 87 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQP-----QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-----TTTTC--------------------CCTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 3345688999999999999999999999987532 1111110 01122 44 588899999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 010063 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA 348 (519)
Q Consensus 269 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 348 (519)
+++++. .|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|
T Consensus 162 ~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 162 HAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp HHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 999986 4556788999999999999999999999999985 345556889999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC----ChhHHHHHHHHHHH
Q 010063 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----HPSFVTHLLNLAAS 424 (519)
Q Consensus 349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~ 424 (519)
+.+++++++. .++. ..++..+|.++...|++++|+..+++++.+.....+.. ......++..+|.+
T Consensus 226 ~~~~~~a~~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 226 LDAYNRALDI-------NPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-------CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 9999999987 2333 34668899999999999999999999998764321111 11156789999999
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063 425 YSRSKNFVEAERLLRICLDIMTKTVG 450 (519)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (519)
+...|++++|...++++++...+..+
T Consensus 296 ~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 99999999999999999998776544
No 38
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.92 E-value=6.3e-22 Score=187.20 Aligned_cols=310 Identities=12% Similarity=0.041 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
.......+..+...|++++|+.++++++... ...+......++..+|.++...|++++|...+++++.+....+
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~- 87 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEEL-----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD- 87 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC-
Confidence 3446667788889999999999999998862 1111223556788999999999999999999999999887643
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (519)
+......++..+|.++...|++++|+.++++++.+.....+..++....++.++|.++...|++++|..++++++++...
T Consensus 88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 33445666889999999999999999999999999887655545677888999999999999999999999999988654
Q ss_pred hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--HHHHHHHHHHCCCHHHHHHHHHHH
Q 010063 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA--MCSLAHAKCANGNAEEAVELYKKA 355 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a 355 (519)
.. ++....++..+|.++...|++++|..++++++.+.... ..+..... ...++.++...|++++|..+++++
T Consensus 168 ~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 168 YQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp SC---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 32 33356788999999999999999999999999876432 12211112 224556688999999999999988
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHH
Q 010063 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (519)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (519)
+... ..........+..++.++...|++++|...+++++....... ..+....++..+|.++...|++++|.
T Consensus 242 ~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 242 AKPE------FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR--LMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp CCCC------CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCC------CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 7531 111122223457899999999999999999999999877642 23345568889999999999999999
Q ss_pred HHHHHHHHHHHH
Q 010063 436 RLLRICLDIMTK 447 (519)
Q Consensus 436 ~~~~~al~~~~~ 447 (519)
..+++++.+...
T Consensus 314 ~~l~~al~~~~~ 325 (373)
T 1hz4_A 314 RVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999998765
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-21 Score=174.79 Aligned_cols=253 Identities=14% Similarity=0.087 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (519)
....+...|..+...|++++|+.+++++++. . ..+.++..+|.++...|++++|+..+++++.......
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWEL----------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence 3455888999999999999999999999987 3 4467899999999999999999999999999886655
Q ss_pred CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (519)
++.+....++..+|.++...|++++|+.++++++.+. ++ +.++...|++++|+..+++++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~-----------~~~~~~~~~~~~a~~~~~~~~~~-- 134 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-----RT-----------ADILTKLRNAEKELKKAEAEAYV-- 134 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CC-----------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----ch-----------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence 5666667889999999999999999999999999862 11 45677788999999999999874
Q ss_pred HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (519)
.|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++
T Consensus 135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6777899999999999999999999999999986 34455789999999999999999999999999
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 010063 357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 424 (519)
+. .++. ..++..+|.++...|++++|...+++++++..+.. ..|....++..++.+
T Consensus 201 ~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 201 EK-------DPNF---VRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKA 256 (258)
T ss_dssp HH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHT
T ss_pred Hh-------CHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHHh
Confidence 87 2333 45678999999999999999999999999876653 345555555555543
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-21 Score=174.68 Aligned_cols=254 Identities=11% Similarity=0.015 Sum_probs=212.5
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 238 (519)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 238 (519)
+..+..+..+|.++...|++++|+..+++++... .. ..++..+|.++...|++++|+..+++++++.... .
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 72 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-----KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R 72 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-----cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence 3567889999999999999999999999998874 22 2358899999999999999999999999987653 2
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063 239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (519)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (519)
++.+....++..+|.++...|++++|+.++++++++. +. +.++...|++++|+..+++++.
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~--------~~~~~~~~~~~~a~~~~~~~~~--- 133 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--------RT--------ADILTKLRNAEKELKKAEAEAY--- 133 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC--------HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------ch--------hHHHHHHhHHHHHHHHHHHHHH---
Confidence 3445557899999999999999999999999999862 21 4567778889999999999987
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (519)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (519)
..|....++..+|.++...|++++|+.++++++.. .+.. ..++..+|.++...|++++|+..+++
T Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 134 -----VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-------APED---ARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------Cccc---HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 46778889999999999999999999999999987 2333 35678999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 010063 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 465 (519)
Q Consensus 399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 465 (519)
++.. .|....++..+|.++...|++++|..++++++++..+.. ..|....++..++.
T Consensus 199 al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 199 AIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK 255 (258)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred HHHh--------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence 9885 344567889999999999999999999999999876542 33555555555554
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=8.4e-23 Score=184.15 Aligned_cols=261 Identities=12% Similarity=0.032 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (519)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (519)
+..+...|.++...|++++|+..++++++.. +.. ..++..+|.++...|++++|+..+++++.. ..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~ 70 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK----YNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT 70 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT----CCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence 3467889999999999999999999998764 222 235889999999999999999999999872 1222
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
.....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 137 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----- 137 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence 334677899999999999999999999999987 4556789999999999999999999999999874
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCC---hHHHHHHHHH
Q 010063 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---GQEGRELLEE 398 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~ 398 (519)
.|....++.++|......+++++|+..++++++. .++. ...+..+|.++...|+ +++|+..+++
T Consensus 138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~p~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL-------KPNI---YIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------Cccc---hHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 4566678899995555567999999999999987 2333 3566889999999999 9999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 010063 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY 468 (519)
Q Consensus 399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 468 (519)
++++......+.......++..+|.+|...|++++|+.++++++++ +|....+...++.+..
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC----
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhc
Confidence 9998865432212335678999999999999999999999999985 2444445555555443
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=2.2e-22 Score=188.12 Aligned_cols=255 Identities=11% Similarity=-0.023 Sum_probs=215.9
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHh
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN-YEKSMLVYQRVINVLESR 236 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~ 236 (519)
.|....++..+|.++...|++++|+..+++++.+. |....+++.+|.++...|+ +++|+..|++++.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l---- 161 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---- 161 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----
Confidence 78889999999999999999999999999999875 5556679999999999997 99999999999987
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
+|....+++++|.++...|++++|+..|++++++ .|....++.++|.++...|++++|+.++++++++
T Consensus 162 ----~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 162 ----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 2444778999999999999999999999999998 6777899999999999999999999999999996
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC--C
Q 010063 317 YTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEA-----VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--R 388 (519)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~ 388 (519)
+|....+++++|.++.. .|.+++| +.++++++.+ .|++ ..++.+++.++...| +
T Consensus 230 --------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-------~P~~---~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 230 --------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-------VPHN---ESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHTTTCGGG
T ss_pred --------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-------CCCC---HHHHHHHHHHHHccCccc
Confidence 56777899999999999 5665888 5889999987 3444 457789999999988 6
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc--------C-HHHHHHHHHHH-HHHHHHhcCCCCcchhH
Q 010063 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK--------N-FVEAERLLRIC-LDIMTKTVGPDDQSISF 458 (519)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~~~~~~~~~ 458 (519)
+++|++.++++ + ..|....++..+|.+|..+| + +++|+.+|+++ ++ .+|....
T Consensus 292 ~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------~DP~r~~ 354 (382)
T 2h6f_A 292 YPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------KDTIRKE 354 (382)
T ss_dssp CHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------TCGGGHH
T ss_pred hHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------hCchhHH
Confidence 88998877664 2 34555678889999999875 2 58888888887 55 3577777
Q ss_pred HHHHHHHHHHhc
Q 010063 459 PMLHLGITLYHL 470 (519)
Q Consensus 459 ~~~~la~~~~~~ 470 (519)
.|..++..+..+
T Consensus 355 ~w~~~~~~l~~~ 366 (382)
T 2h6f_A 355 YWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 787777766654
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=4.5e-22 Score=185.97 Aligned_cols=256 Identities=9% Similarity=-0.034 Sum_probs=211.4
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-AKKAVEIYHRVITILE 276 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 276 (519)
..|....++..+|.++...|++++|+..+++++.+ +|....++.++|.++...|+ +++|+..+++++++
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-- 161 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-- 161 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence 34778888999999999999999999999999986 34457889999999999997 99999999999997
Q ss_pred HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (519)
.|....+++++|.++...|++++|+..|++++++ +|....++.++|.++...|++++|+.++++++
T Consensus 162 ------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 162 ------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6777899999999999999999999999999996 56777899999999999999999999999999
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc-
Q 010063 357 RVIKDSNYMSLDDSIMENMRIDLAELLHI-VGRGQEG-----RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK- 429 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g- 429 (519)
++ .++. ..+++++|.++.. .|..++| +.++++++.+ .|....++.++|.++...|
T Consensus 228 ~l-------~P~~---~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 228 KE-------DVRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp HH-------CTTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCG
T ss_pred Hh-------CCCC---HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCc
Confidence 98 3333 4577999999999 5665888 5889998885 4555678999999999988
Q ss_pred -CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC--------C-hHHHHHHHHHH-HHHHHHhcCCCCCcc
Q 010063 430 -NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN--------R-DKEAEKLVLEA-LYIREIAFGKDSLPV 498 (519)
Q Consensus 430 -~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-~~~~~~~~~~~~~~~ 498 (519)
++++|++.++++ + ..|....++..+|.+|..+| + +++|+.+|+++ +++ ++
T Consensus 290 ~~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~----------DP 350 (382)
T 2h6f_A 290 SKYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK----------DT 350 (382)
T ss_dssp GGCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT----------CG
T ss_pred cchHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh----------Cc
Confidence 689998877664 2 34666778899999999985 2 47777777776 442 22
Q ss_pred hhhHHHHHHHHHHHHh
Q 010063 499 GKLFCFVLFGLVWFCL 514 (519)
Q Consensus 499 ~~~~~~~~l~~~~~~l 514 (519)
.....|..++..+..+
T Consensus 351 ~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 351 IRKEYWRYIGRSLQSK 366 (382)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 2235577777776543
No 44
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=1.4e-20 Score=184.60 Aligned_cols=299 Identities=14% Similarity=0.068 Sum_probs=243.0
Q ss_pred HHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhh
Q 010063 120 ELFNEVKSMIM----MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSGI 191 (519)
Q Consensus 120 ~l~~~~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 191 (519)
..+..+..+.. .+++++|+.+|+++.+. ..+.++..+|.+|.. .+++++|+.+|+++...
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 46677888888 89999999999998763 245678899999998 89999999999998653
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----cCCHHH
Q 010063 192 VDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKK 263 (519)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 263 (519)
. ...+++.+|.+|.. .+++++|+.+|+++.+. .+ ..++..+|.+|.. .+++++
T Consensus 145 ~---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 145 G---------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp T---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred C---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCHHH
Confidence 1 13458899999987 88999999999998763 12 5678899999998 899999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010063 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK 339 (519)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 339 (519)
|+.+|+++.+. . ...++..+|.+|.. .+++++|+.+|+++.+. ....++.++|.+|
T Consensus 206 A~~~~~~a~~~-------~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y 265 (490)
T 2xm6_A 206 SAQWYRKSATS-------G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHH
Confidence 99999999763 1 25678899999997 89999999999998763 2234778899999
Q ss_pred HH----CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHhhCCC
Q 010063 340 CA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-----GRGQEGRELLEECLLITEKYKGKE 410 (519)
Q Consensus 340 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~ 410 (519)
.. .+++++|+.+|+++.+. .+ ..++..+|.+|... +++++|+.+|+++.+. .
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~---------~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~ 326 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQ---------GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------G 326 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTT---------TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------T
T ss_pred HCCCCCCCCHHHHHHHHHHHHHc---------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------C
Confidence 98 89999999999998753 12 23568899999988 8999999999998763 2
Q ss_pred ChhHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh----cCChHHHHHHHHHH
Q 010063 411 HPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEA 483 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 483 (519)
+ ..++.++|.+|...| ++++|+.+|+++.+. ....++.++|.+|.. .+++++|..+|+++
T Consensus 327 ~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 327 D---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp C---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 2 357888999998866 889999999999872 234678899999999 89999999999999
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHHHHHHHH
Q 010063 484 LYIREIAFGKDSLPVGKLFCFVLFGLVWFC 513 (519)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 513 (519)
.+. .+ ..++++||.+|..
T Consensus 394 ~~~-------~~-----~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 394 AEQ-------GL-----SAAQVQLGEIYYY 411 (490)
T ss_dssp HHT-------TC-----HHHHHHHHHHHHH
T ss_pred HhC-------CC-----HHHHHHHHHHHHc
Confidence 862 22 2458899999987
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=2.4e-22 Score=181.15 Aligned_cols=243 Identities=13% Similarity=0.103 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (519)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (519)
.++..|..++..|++++|+..++++++. .|..+.++..+|.++...|++++|+..+++++.. +++.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~----------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~ 70 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK----------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK----VNAT 70 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT----------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT----SCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----cCch
Confidence 3678899999999999999999999987 5555668999999999999999999999999873 2333
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
.....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.+++++++.
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 137 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----- 137 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence 3346678999999999999999999999999862 223567889999999999999999999999875
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---AEEAVELYKKAL 356 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al 356 (519)
.|....++..+|......+++++|+..+++++++ .|....++..+|.++...|+ +++|+..+++++
T Consensus 138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 5666789999994455566999999999999986 34446788899999999999 999999999999
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
+...... .++......++..+|.+|...|++++|+.++++++++
T Consensus 207 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 207 EVCAPGG--AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHGGGG--GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccc--ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9976531 1113445678899999999999999999999999986
No 46
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=1.5e-20 Score=184.42 Aligned_cols=299 Identities=13% Similarity=0.069 Sum_probs=246.5
Q ss_pred HHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh----cCChHHHHHHHHHHHhh
Q 010063 120 ELFNEVKSMIM----MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSGI 191 (519)
Q Consensus 120 ~l~~~~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 191 (519)
..+..+..+.. .+++++|+.+|+++.+. ..+.+++.+|.+|.. .+++++|+.+|+++...
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK 108 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 35667777777 89999999999999763 235688999999999 99999999999998753
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----cCCHHH
Q 010063 192 VDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKK 263 (519)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 263 (519)
. + ..+++.+|.+|.. .+++++|+.+|+++.+. ++ ..++..+|.+|.. .+++++
T Consensus 109 ~------~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 109 G------L---PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp T------C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred C------C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHH
Confidence 1 1 3457889999998 88999999999998763 12 5678899999998 899999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010063 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK 339 (519)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 339 (519)
|+.+|+++.+. ....++..+|.+|.. .+++++|+.+|+++.+. .+ ..++..+|.+|
T Consensus 170 A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y 229 (490)
T 2xm6_A 170 AREWYSKAAEQ----------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------GD---ELGQLHLADMY 229 (490)
T ss_dssp HHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHH
Confidence 99999999864 136788999999998 89999999999999873 22 35788999999
Q ss_pred HH----CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCC
Q 010063 340 CA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEH 411 (519)
Q Consensus 340 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 411 (519)
.. .+++++|+.+|+++.+. .+ ..++..+|.+|.. .+++++|+.+|+++.+. .+
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~---------~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-------~~ 290 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQ---------GN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-------GN 290 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTT---------TC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-------TC
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC---------CC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-------CC
Confidence 97 89999999999998764 12 2456889999998 89999999999998752 22
Q ss_pred hhHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC---ChHHHHHHHHHH
Q 010063 412 PSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---RDKEAEKLVLEA 483 (519)
Q Consensus 412 ~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a 483 (519)
..++..+|.+|... +++++|+.+|+++.+. . ...++.++|.+|...| ++++|+.+|+++
T Consensus 291 ---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a 357 (490)
T 2xm6_A 291 ---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKA 357 (490)
T ss_dssp ---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 35788999999988 9999999999999872 2 2357899999999877 889999999999
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHHHHHHHH
Q 010063 484 LYIREIAFGKDSLPVGKLFCFVLFGLVWFC 513 (519)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 513 (519)
++. .+ ..++++||.+|..
T Consensus 358 ~~~-------~~-----~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 358 AAK-------GE-----KAAQFNLGNALLQ 375 (490)
T ss_dssp HHT-------TC-----HHHHHHHHHHHHH
T ss_pred HHC-------CC-----HHHHHHHHHHHHc
Confidence 863 22 3558899999987
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.89 E-value=4.4e-22 Score=172.35 Aligned_cols=197 Identities=17% Similarity=0.119 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
..++..+|.++...|++++|+..|+++++. .|....++.++|.++...|++++|+..+++++++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 68 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------- 68 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 457889999999999999999999999975 6777899999999999999999999999999986
Q ss_pred ChhHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHH
Q 010063 325 DGRVGMAMCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR 393 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (519)
.|....++.++|.++... |++++|+..+++++++ .|+. ..++.++|.++...|++++|+
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~P~~---~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-------NPRY---APLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-------Cccc---HHHHHHHHHHHHHcCChHHHH
Confidence 466677899999999999 9999999999999998 3444 346689999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCCh
Q 010063 394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD 473 (519)
Q Consensus 394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 473 (519)
..|++++++. ....++.++|.++...|++++|+..|++++++ +|....++..+|.++...|++
T Consensus 139 ~~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 139 ASLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC----
T ss_pred HHHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCH
Confidence 9999999862 23567889999999999999999999999984 466677889999999999999
Q ss_pred HHHHHHHHHHH
Q 010063 474 KEAEKLVLEAL 484 (519)
Q Consensus 474 ~~A~~~~~~a~ 484 (519)
++|+..++++-
T Consensus 202 ~~A~~~~~~~~ 212 (217)
T 2pl2_A 202 EEAARAAALEH 212 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.89 E-value=6.7e-22 Score=171.20 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 238 (519)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 238 (519)
|..+.++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+..+++++++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----- 69 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART----- 69 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 3445688999999999999999999999998764 4455679999999999999999999999999872
Q ss_pred CCCHHHHHHHHHHHHHHhhc-----------CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHH
Q 010063 239 KTSILLVTSLLGMAKVLGSI-----------GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307 (519)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 307 (519)
|....++..+|.++... |++++|+..+++++++ .|....++.++|.++...|++++|+
T Consensus 70 ---P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 70 ---PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHH
Confidence 44467889999999999 9999999999999997 5667889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC
Q 010063 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387 (519)
Q Consensus 308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (519)
..|++++++ + ....++.++|.++...|++++|+..|+++++. .|+. ..++.++|.++...|
T Consensus 139 ~~~~~al~~-------~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~P~~---~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 139 ASLKQALAL-------E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-------APKD---LDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHHHH-------C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHTC--
T ss_pred HHHHHHHhc-------c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHcc
Confidence 999999997 2 34557889999999999999999999999987 3444 346689999999999
Q ss_pred ChHHHHHHHHHHH
Q 010063 388 RGQEGRELLEECL 400 (519)
Q Consensus 388 ~~~~A~~~~~~al 400 (519)
++++|+..++++-
T Consensus 200 ~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 200 KAEEAARAAALEH 212 (217)
T ss_dssp -------------
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998753
No 49
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=3.2e-20 Score=167.92 Aligned_cols=281 Identities=13% Similarity=0.046 Sum_probs=212.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH
Q 010063 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE-VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (519)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (519)
.++..+..|+|.+|+..+++.... .|+. ......++.+|...|++++|+..++. .+.| .
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~----------~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~~~-~ 64 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPS----------SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---------SSAP-E 64 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCC----------SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---------TSCH-H
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC----------CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---------cCCh-h
Confidence 356678899999999988765332 4554 45778889999999999999875533 1223 4
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
..++..++..+...|+.++|+..+++.+.. ..+|....++..+|.++...|++++|+..+++
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------ 126 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------ 126 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------
Confidence 566888999999999999999999987652 11244456788999999999999999999886
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
|....++..+|.++..+|++++|+..++++++.. +++.. ......+..++...|++++|+..|+++++.
T Consensus 127 -~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~~-~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---- 195 (291)
T 3mkr_A 127 -GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDATL-TQLATAWVSLAAGGEKLQDAYYIFQEMADK---- 195 (291)
T ss_dssp -CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHh----
Confidence 2345788899999999999999999999998862 22211 111111223444569999999999999987
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHH-HHHHHHHH
Q 010063 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE-AERLLRIC 441 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a 441 (519)
.|++ ..+++++|.++...|++++|+..+++++.. .|....++.++|.++...|++++ +..+++++
T Consensus 196 ---~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 196 ---CSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp ---SCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ---CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2333 446789999999999999999999999985 45566789999999999999976 57899999
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063 442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479 (519)
Q Consensus 442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 479 (519)
+++ .|++|.... ...+.+.++++..-
T Consensus 262 ~~~-----~P~~~~~~d-------~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 262 KDA-----HRSHPFIKE-------YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHH-----CTTCHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHh-----CCCChHHHH-------HHHHHHHHHHHHHH
Confidence 884 466655443 33444455554443
No 50
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=4.4e-20 Score=167.03 Aligned_cols=262 Identities=14% Similarity=0.082 Sum_probs=205.7
Q ss_pred HHHhcCChHHHHHHHHHHHhhhhhcCCCchHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010063 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL-DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249 (519)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 249 (519)
..+..|+|..|+..+++... ..|.. ......++.+|...|++++|+..++. .+ +....++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~-------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~~-~~~~~a~~ 69 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP-------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SS-APELQAVR 69 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC-------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------TS-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc-------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------cC-ChhHHHHH
Confidence 35678999999998876432 22443 34567789999999999999976543 12 33567888
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (519)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (519)
.++..+...|++++|++.+++++.. ...|....++..+|.++...|++++|+..+++ |...
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~~ 130 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDSL 130 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCSH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCCH
Confidence 9999999999999999999998753 11466678899999999999999999999886 2334
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (519)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (519)
.++..+|.++..+|++++|+..++++++. .+++... .....+..++...|++++|+..|+++++.
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-------~p~~~~~-~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------- 195 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQ-------DEDATLT-QLATAWVSLAAGGEKLQDAYYIFQEMADK------- 195 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHH-HHHHHHHHHHHCTTHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CcCcHHH-HHHHHHHHHHhCchHHHHHHHHHHHHHHh-------
Confidence 57888999999999999999999999887 3443221 11112223444568999999999999875
Q ss_pred CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHH
Q 010063 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-AEKLVLEALYIRE 488 (519)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~~ 488 (519)
.|....+++++|.++...|++++|+..+++++.. +|....++.++|.++...|+..+ +..++++++++.
T Consensus 196 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~- 265 (291)
T 3mkr_A 196 -CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH- 265 (291)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-
Confidence 3445678999999999999999999999999984 46667788999999999999976 578999998764
Q ss_pred HhcCCCCCcc
Q 010063 489 IAFGKDSLPV 498 (519)
Q Consensus 489 ~~~~~~~~~~ 498 (519)
|+||.+
T Consensus 266 ----P~~~~~ 271 (291)
T 3mkr_A 266 ----RSHPFI 271 (291)
T ss_dssp ----TTCHHH
T ss_pred ----CCChHH
Confidence 667654
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=2.5e-19 Score=161.38 Aligned_cols=224 Identities=15% Similarity=0.180 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHH
Q 010063 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~ 277 (519)
...+++.+|.++...|++++|+.+|+++++. ++ ..++..+|.+|.. .+++++|+.+|+++++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence 3456889999999999999999999999871 22 4678899999999 99999999999999875
Q ss_pred hcCCCChhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHH
Q 010063 278 NRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAV 349 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 349 (519)
+ ...++.++|.+|.. .+++++|+.+++++++. + ...++.++|.+|.. .+++++|+
T Consensus 72 ----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 72 ----N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp ----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ----C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 1 46788999999999 99999999999999874 1 34578999999999 99999999
Q ss_pred HHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 010063 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425 (519)
Q Consensus 350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 425 (519)
.+++++++. + + ..++.++|.++.. .+++++|+.+++++++. .+ ..++..+|.+|
T Consensus 135 ~~~~~a~~~-------~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~ 192 (273)
T 1ouv_A 135 EYFTKACDL-------N--D---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGNMY 192 (273)
T ss_dssp HHHHHHHHT-------T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHH
T ss_pred HHHHHHHhc-------C--c---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHH
Confidence 999999875 1 2 3456889999999 99999999999999864 12 36788999999
Q ss_pred Hh----ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh----cCChHHHHHHHHHHHHHH
Q 010063 426 SR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 426 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~ 487 (519)
.. .+++++|+.+|+++++. . + ..++..+|.+|.. .+++++|..+|+++++..
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~-------~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACEL-------E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHT-------T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCCCccHHHHHHHHHHHHhC-------C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99 99999999999999983 1 2 4678999999999 999999999999998853
No 52
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.86 E-value=1.1e-19 Score=165.02 Aligned_cols=225 Identities=12% Similarity=0.078 Sum_probs=173.7
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (519)
+...|.+|...|++++|+..|++++.+.... .+.+..+.++.++|.+|...|++++|+.+|++++++..... +...
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~ 115 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRR 115 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--CHHH
Confidence 3344667888999999999999999998764 24456688999999999999999999999999999987653 3344
Q ss_pred hHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063 286 LVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (519)
Q Consensus 286 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (519)
.+.++.++|.+|... |++++|+.+|++++++..... .......++.++|.++..+|++++|+.+|++++++...
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--- 190 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG--- 190 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS---
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---
Confidence 577899999999996 999999999999999987541 22234668999999999999999999999999987432
Q ss_pred CCCC-chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH--hccCHHHHHHHHHHH
Q 010063 365 MSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS--RSKNFVEAERLLRIC 441 (519)
Q Consensus 365 ~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a 441 (519)
.+. .......+.++|.++...|++++|+..+++++.+..... .......+..++..+. ..+++++|+..|+++
T Consensus 191 -~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 191 -NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp -CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred -CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 111 123345778999999999999999999999987654321 1112334556666665 567788888888766
Q ss_pred HH
Q 010063 442 LD 443 (519)
Q Consensus 442 l~ 443 (519)
+.
T Consensus 267 ~~ 268 (292)
T 1qqe_A 267 MR 268 (292)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 53
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=1.4e-19 Score=164.42 Aligned_cols=234 Identities=13% Similarity=0.041 Sum_probs=180.1
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 010063 218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297 (519)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 297 (519)
++++|+..|+++ |.+|...|++++|+..|++++++..+.. +.+..+.++.++|.+|
T Consensus 32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~ 87 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCF 87 (292)
T ss_dssp HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Confidence 588888888876 4567789999999999999999987753 3455688999999999
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHH
Q 010063 298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376 (519)
Q Consensus 298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 376 (519)
...|++++|+.++++++++..... +....+.++.++|.+|... |++++|+.+|++++++.+.. .+......++
T Consensus 88 ~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~----~~~~~~~~~~ 161 (292)
T 1qqe_A 88 KSGGNSVNAVDSLENAIQIFTHRG--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCF 161 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC----CChHHHHHHH
Confidence 999999999999999999987652 3334577899999999996 99999999999999998752 3344456778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 010063 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456 (519)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 456 (519)
.++|.++..+|++++|+.+|++++.+..... ........++.++|.++..+|++++|+.+|++++.+..... ....
T Consensus 162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~ 237 (292)
T 1qqe_A 162 IKCADLKALDGQYIEASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRE 237 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC-cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHH
Confidence 9999999999999999999999998643210 00123455789999999999999999999999988543221 1112
Q ss_pred hHHHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 010063 457 SFPMLHLGITLY--HLNRDKEAEKLVLEALY 485 (519)
Q Consensus 457 ~~~~~~la~~~~--~~g~~~~A~~~~~~a~~ 485 (519)
...+..++..+. ..+++++|+..|++++.
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 234556666665 45667777777765543
No 54
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.85 E-value=3.2e-19 Score=163.27 Aligned_cols=248 Identities=10% Similarity=0.054 Sum_probs=197.2
Q ss_pred ccccHHHHHHHHHHHHHHHHH-hc--CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 010063 215 TLENYEKSMLVYQRVINVLES-RY--GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF 291 (519)
Q Consensus 215 ~~g~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 291 (519)
..|++++|..+++++.+.... .+ +++.......+...|.+|...|++++|+..|.+++++..+.. +....+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 468899999999998876553 12 234445566777788999999999999999999999987764 3456678999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchH
Q 010063 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (519)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (519)
++|.+|..+|++++|+.+|++++++..... +....+.++.++|.+|.. |++++|+.+|++++++.+.. .+...
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~----~~~~~ 153 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE----ERLRQ 153 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT----TCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC----CChhH
Confidence 999999999999999999999999987642 233467889999999999 99999999999999998763 34455
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCC
Q 010063 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 451 (519)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (519)
...++.++|.++..+|++++|+.+|++++.+..+.. ..+....++..+|.++..+|++++|+.+|++++ +....
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~--- 227 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF--- 227 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---
Confidence 677889999999999999999999999999987652 234456688899999999999999999999998 53111
Q ss_pred CCcchhHHHHHHHHHHHhcCChHHHHH
Q 010063 452 DDQSISFPMLHLGITLYHLNRDKEAEK 478 (519)
Q Consensus 452 ~~~~~~~~~~~la~~~~~~g~~~~A~~ 478 (519)
........+..++..+ ..|+.+.+..
T Consensus 228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 228 SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 1122334456666665 5677665555
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.85 E-value=1.1e-19 Score=163.79 Aligned_cols=256 Identities=11% Similarity=0.035 Sum_probs=198.8
Q ss_pred HHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010063 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (519)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (519)
.....|++++|+..+++++... ..++|....++..+|.++...|++++|+..+++++... |....++..
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~ 82 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASR---ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNY 82 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCCHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcc---cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--------CCcHHHHHH
Confidence 3445688999999999988763 23457788889999999999999999999999999862 223567889
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (519)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (519)
+|.++...|++++|+.++++++++ .|....++..+|.++...|++++|+.++++++++. ++++ .
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~---~ 146 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDP---F 146 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---H
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCh---H
Confidence 999999999999999999999987 45557889999999999999999999999999862 2222 2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (519)
....++ +....|++++|+..+++++... ++.... ..++.++...++.++|+..+++++......
T Consensus 147 ~~~~~~-~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 210 (275)
T 1xnf_A 147 RSLWLY-LAEQKLDEKQAKEVLKQHFEKS-------DKEQWG----WNIVEFYLGNISEQTLMERLKADATDNTSL---- 210 (275)
T ss_dssp HHHHHH-HHHHHHCHHHHHHHHHHHHHHS-------CCCSTH----HHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----
T ss_pred HHHHHH-HHHHhcCHHHHHHHHHHHHhcC-------CcchHH----HHHHHHHHHhcCHHHHHHHHHHHhcccccc----
Confidence 222233 3466799999999999988762 222221 347788888999999999999887654332
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHH
Q 010063 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (519)
.+....++..+|.++...|++++|+.+|++++.+ .|... ...+.++...|++++|++.+
T Consensus 211 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 211 AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence 2344688999999999999999999999999873 23222 23367788889999998877
No 56
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.85 E-value=4.7e-19 Score=162.12 Aligned_cols=247 Identities=9% Similarity=0.059 Sum_probs=194.3
Q ss_pred hcCChHHHHHHHHHHHhhhhh--c--CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010063 174 YIGDLKFVQSLLDMMSGIVDS--L--KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249 (519)
Q Consensus 174 ~~g~~~~A~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 249 (519)
..|++++|..+++++.+.... + .++.......+...|.+|...|++++|+..|.+++.+.... .+....+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 457788888888887765542 1 23444555567777899999999999999999999998775 34456788999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (519)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (519)
++|.+|...|++++|+.+|++++++..... +....+.++.++|.+|.. |++++|+.+|++++++..... +.....
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~~~~~~ 155 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--RLRQAA 155 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--ChhHHH
Confidence 999999999999999999999999987643 334567899999999999 999999999999999987641 223457
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (519)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (519)
.++.++|.++..+|++++|+.+|++++.+..+. .........+.++|.++...|++++|+.+|++++ +....
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~--- 227 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM----ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF--- 227 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---
Confidence 789999999999999999999999999998763 2344555678899999999999999999999998 53221
Q ss_pred CChhHHHHHHHHHHHHHhccCHHHHHH
Q 010063 410 EHPSFVTHLLNLAASYSRSKNFVEAER 436 (519)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (519)
........+..++..+ ..|+.+.+..
T Consensus 228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 228 SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 1223344566666666 5677655544
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.85 E-value=6e-19 Score=158.87 Aligned_cols=225 Identities=15% Similarity=0.159 Sum_probs=193.1
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHH
Q 010063 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLE 234 (519)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~ 234 (519)
+..+.+++.+|.++...|++++|+.+|+++.+. .+ ..+++.+|.++.. .+++++|+.+|+++++.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-- 71 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-- 71 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--
Confidence 455778999999999999999999999998862 12 2468899999999 99999999999999875
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh----CCCHHHH
Q 010063 235 SRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDA 306 (519)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 306 (519)
+ ...++..+|.+|.. .+++++|+.+|+++++. + ...++.++|.+|.. .+++++|
T Consensus 72 -----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 72 -----N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp -----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred -----C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHH
Confidence 1 25678899999999 99999999999999874 1 36789999999999 9999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 010063 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL 382 (519)
Q Consensus 307 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~ 382 (519)
+.+++++++. + ...++.++|.++.. .+++++|+.+++++++. + + ..++.++|.+
T Consensus 134 ~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~--~---~~a~~~lg~~ 191 (273)
T 1ouv_A 134 VEYFTKACDL-------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------K--D---SPGCFNAGNM 191 (273)
T ss_dssp HHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T--C---HHHHHHHHHH
T ss_pred HHHHHHHHhc-------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C--C---HHHHHHHHHH
Confidence 9999999974 2 23578899999999 99999999999999875 1 2 3466899999
Q ss_pred HHH----cCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHH
Q 010063 383 LHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDI 444 (519)
Q Consensus 383 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 444 (519)
|.. .+++++|+.+++++++. .+ ..++..+|.+|.. .+++++|+.+|+++++.
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 999 99999999999999874 12 4678899999999 99999999999999984
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=5.9e-19 Score=159.06 Aligned_cols=233 Identities=15% Similarity=0.062 Sum_probs=186.8
Q ss_pred HHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 010063 210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 289 (519)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 289 (519)
+......|++++|+..++++++.. ..++|....++..+|.++...|++++|+..++++++. .|....+
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~ 79 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEV 79 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHH
T ss_pred eeccCccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHH
Confidence 334556799999999999988752 1234677889999999999999999999999999987 4556788
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369 (519)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (519)
+..+|.++...|++++|+.++++++++ .|....++..+|.++...|++++|+.+++++++. .++.
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~~~~ 144 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DPND 144 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCC
Confidence 999999999999999999999999986 3444568899999999999999999999999987 3444
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc
Q 010063 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449 (519)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (519)
+... . ...+....|++++|+..+++++... +..+. ...++.++...++.++|+..+++++......
T Consensus 145 ~~~~---~-~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~- 210 (275)
T 1xnf_A 145 PFRS---L-WLYLAEQKLDEKQAKEVLKQHFEKS-----DKEQW----GWNIVEFYLGNISEQTLMERLKADATDNTSL- 210 (275)
T ss_dssp HHHH---H-HHHHHHHHHCHHHHHHHHHHHHHHS-----CCCST----HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH-
T ss_pred hHHH---H-HHHHHHHhcCHHHHHHHHHHHHhcC-----CcchH----HHHHHHHHHHhcCHHHHHHHHHHHhcccccc-
Confidence 3221 2 2234467799999999999988753 12221 2347788889999999999999887643321
Q ss_pred CCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
.+....++..+|.+|...|++++|..+|++++++
T Consensus 211 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 211 ---AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2344678899999999999999999999999874
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.83 E-value=2.3e-19 Score=174.28 Aligned_cols=205 Identities=13% Similarity=0.102 Sum_probs=175.5
Q ss_pred CCchHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063 197 DDEPLLDAILLHMGSMYSTLENY-EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (519)
...+..+.+++.+|.++...|++ ++|+.+|++++++. |....++..+|.+|...|++++|+.+|++++++
T Consensus 96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~- 166 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH- 166 (474)
T ss_dssp TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-
T ss_pred ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 33455567799999999999999 99999999999862 334678999999999999999999999999986
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC----
Q 010063 276 ELNRGTESADLVLPLFSLGSLFIKE---------GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN---- 342 (519)
Q Consensus 276 ~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---- 342 (519)
.|. ..++.++|.++... |++++|+..+++++++ .|....++.++|.++...
T Consensus 167 -------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 167 -------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp -------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHT
T ss_pred -------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhh
Confidence 344 58999999999999 9999999999999986 456667899999999999
Q ss_pred ----CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHH
Q 010063 343 ----GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 418 (519)
Q Consensus 343 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 418 (519)
|++++|+..|++++++. +..+....++.++|.+|...|++++|+..|++++++ .|....++
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a~ 295 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVD-------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEPQ 295 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC-------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred ccccchHHHHHHHHHHHHHhC-------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 99999999999999982 211133567899999999999999999999999986 34556788
Q ss_pred HHHHHHHHhccCHHHHHHHHHHH
Q 010063 419 LNLAASYSRSKNFVEAERLLRIC 441 (519)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~a 441 (519)
..++.++...|++++|+..+.+.
T Consensus 296 ~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 296 QREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999876543
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.83 E-value=6e-19 Score=171.32 Aligned_cols=222 Identities=15% Similarity=0.113 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh
Q 010063 221 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK 299 (519)
Q Consensus 221 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 299 (519)
.....+++++...+.... ..+..+.++..+|.++...|++ ++|+.+|++++++ .|....++..+|.+|..
T Consensus 79 ~~~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~ 149 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWK 149 (474)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Confidence 334444455444443322 2345578899999999999999 9999999999987 56678899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHhhccCCCCch
Q 010063 300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN---------GNAEEAVELYKKALRVIKDSNYMSLDDS 370 (519)
Q Consensus 300 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 370 (519)
.|++++|+.+|++++++ .|. ..++.++|.++... |++++|+..+++++++ .++.
T Consensus 150 ~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~- 212 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-------DVLD- 212 (474)
T ss_dssp HTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-------CTTC-
T ss_pred cCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-------CCCC-
Confidence 99999999999999985 344 47899999999999 9999999999999997 3333
Q ss_pred HHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063 371 IMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (519)
Q Consensus 371 ~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (519)
..++.++|.+|... |++++|+..|++++.+.. ..+....++.++|.+|...|++++|+..|++++
T Consensus 213 --~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 213 --GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR-----KASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG-----GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC-----CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45678999999999 999999999999998621 112667899999999999999999999999999
Q ss_pred HHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063 443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (519)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (519)
.+ .|....++..++.++...|++++|+..+.+.
T Consensus 286 ~l--------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 286 AL--------DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred Hh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 85 3556678899999999999999999877554
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.83 E-value=3e-19 Score=157.79 Aligned_cols=218 Identities=15% Similarity=0.205 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010063 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (519)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (519)
.+..++.+|..+...|++++|+.+++++++. .|....++..+|.++...|++++|+..++++++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 86 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------- 86 (243)
T ss_dssp --------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Confidence 4456889999999999999999999999873 2333678889999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
.|....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.+++++++.
T Consensus 87 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 154 (243)
T 2q7f_A 87 -DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--- 154 (243)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---
T ss_pred -CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 45567889999999999999999999999999862 334557889999999999999999999999987
Q ss_pred hccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (519)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (519)
.++. ..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|..+++++
T Consensus 155 ----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 155 ----NEND---TEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp ----CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred ----CCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2333 346688999999999999999999999875 2344568899999999999999999999999
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHHHHh
Q 010063 442 LDIMTKTVGPDDQSISFPMLHLGITLYH 469 (519)
Q Consensus 442 l~~~~~~~~~~~~~~~~~~~~la~~~~~ 469 (519)
+++ .|+...++..++.+...
T Consensus 220 ~~~--------~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 220 IDI--------QPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHH--------CTTCHHHHHHHTC----
T ss_pred Hcc--------CcchHHHHHHHHHHHhh
Confidence 984 23444455555544433
No 62
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.83 E-value=3e-19 Score=157.76 Aligned_cols=221 Identities=11% Similarity=0.093 Sum_probs=161.1
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
....+..+..+|..+...|++++|+..+++++... |....++..+|.++...|++++|+..+++++...
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 87 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------KEDAIPYINFANLLSSVNELERALAFYDKALELD---- 87 (243)
T ss_dssp -----------------------CCTTHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Confidence 33456778899999999999999999999988753 3335568899999999999999999999998862
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 88 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~- 154 (243)
T 2q7f_A 88 ----SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL- 154 (243)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-
T ss_pred ----CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence 233677889999999999999999999999987 3445678899999999999999999999999985
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (519)
.|....++..+|.++...|++++|+.++++++.. .++. ..++..+|.++...|++++|+.+++
T Consensus 155 -------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 155 -------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-------DPGH---ADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred -------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc---HHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3444567899999999999999999999999887 2333 3467899999999999999999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 010063 398 ECLLITEKYKGKEHPSFVTHLLNLAASYSR 427 (519)
Q Consensus 398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 427 (519)
+++++. |....++..++.+...
T Consensus 218 ~~~~~~--------p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 218 KAIDIQ--------PDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHC--------TTCHHHHHHHTC----
T ss_pred HHHccC--------cchHHHHHHHHHHHhh
Confidence 998852 3333455555544433
No 63
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=5.5e-18 Score=150.56 Aligned_cols=203 Identities=11% Similarity=0.042 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (519)
....++..+..+...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++...
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---- 101 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD---- 101 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence 3556888999999999999999999999987 66668899999999999999999999999998774
Q ss_pred CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (519)
|....++..+|.++...|++++|+.++++++. .+..+....++..+|.++...|++++|+.+++++++.
T Consensus 102 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 170 (252)
T 2ho1_A 102 ---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-- 170 (252)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 22345688999999999999999999999876 1234566788999999999999999999999999986
Q ss_pred HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (519)
.|....++..+|.++...|++++|+.+++++++. .|....++..++.++...|++++|..++++++
T Consensus 171 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 171 ------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp ------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445778899999999999999999999998873 34445678889999999999999999999998
Q ss_pred HH
Q 010063 357 RV 358 (519)
Q Consensus 357 ~~ 358 (519)
+.
T Consensus 237 ~~ 238 (252)
T 2ho1_A 237 RL 238 (252)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.82 E-value=1.5e-18 Score=146.08 Aligned_cols=168 Identities=15% Similarity=0.149 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (519)
...+|.++|.+|...|++++|+..|++++++ +|....++..+|.++...|++++|+..+.+++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL------- 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 4678999999999999999999999999986 4666778999999999999999999999999887
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
.++. ..++..+|.++...++++.|...+.+++.+ .|....++..+|.+|...|++++|+..|++++++
T Consensus 69 ~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~- 136 (184)
T 3vtx_A 69 DTTS---AEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI- 136 (184)
T ss_dssp CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred Cchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-
Confidence 3333 345678999999999999999999999875 3445578889999999999999999999999985
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
+|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 137 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 137 -------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 46667889999999999999999999999999864
No 65
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=3.2e-18 Score=152.15 Aligned_cols=204 Identities=12% Similarity=0.053 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC
Q 010063 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (519)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (519)
...++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------- 100 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS------- 100 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 4788999999999999999999999999987 3555788999999999999999999999999986
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (519)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (519)
.|....++..+|.++...|++++|+.++++++.. +..+....++..+|.++...|++++|+.++++++...
T Consensus 101 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 101 -DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD--------TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC--------TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC--------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444568899999999999999999999998861 1233345677899999999999999999999998752
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (519)
Q Consensus 404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (519)
|....++..+|.++...|++++|..++++++.. .|.....+..++.++...|++++|..+++++
T Consensus 172 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 172 --------RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp --------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 333567889999999999999999999998862 3455667889999999999999999999999
Q ss_pred HHHH
Q 010063 484 LYIR 487 (519)
Q Consensus 484 ~~~~ 487 (519)
++..
T Consensus 236 ~~~~ 239 (252)
T 2ho1_A 236 KRLY 239 (252)
T ss_dssp HHHC
T ss_pred HHHC
Confidence 8754
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.82 E-value=2.4e-18 Score=144.88 Aligned_cols=166 Identities=17% Similarity=0.269 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
..++.++|.+|...|++++|+..|++++++ +|....++..+|.+|...|++++|+..+.+++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------- 68 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------- 68 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 668899999999999999999999999987 5677889999999999999999999999999875
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (519)
.|....++..+|.++...+++++|...+.+++.. .++. ..++..+|.++...|++++|+..|++++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-------~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-- 136 (184)
T 3vtx_A 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-------NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISI-- 136 (184)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHh--
Confidence 3555667889999999999999999999999987 3333 345688999999999999999999999985
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
+|....++.++|.+|..+|++++|+.+|++++++
T Consensus 137 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 137 ------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 4556678999999999999999999999999984
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.82 E-value=7.1e-19 Score=177.22 Aligned_cols=175 Identities=21% Similarity=0.275 Sum_probs=157.5
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (519)
..|..+.+++++|.++..+|++++|+..|++++++ +|....++.++|.+|..+|++++|+..|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 45888889999999999999999999999999987 2444778999999999999999999999999998
Q ss_pred hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
.|....+++++|.++..+|++++|+..|++++++ +|....++.++|.+|..+|++++|+..|+++++
T Consensus 73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5777899999999999999999999999999986 467778999999999999999999999999999
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (519)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (519)
+ .++. ..++.++|.++...|++++|.+.+++++++....
T Consensus 140 l-------~P~~---~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 140 L-------KPDF---PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp H-------CSCC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred h-------CCCC---hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 8 3444 4567999999999999999999999999987654
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.82 E-value=5.8e-19 Score=177.86 Aligned_cols=174 Identities=18% Similarity=0.228 Sum_probs=158.3
Q ss_pred CChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh
Q 010063 157 KGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 236 (519)
Q Consensus 157 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 236 (519)
..|..+.+++++|.+|..+|++++|+..|++++++. |....+++++|.+|..+|++++|+..|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 478899999999999999999999999999999885 455667999999999999999999999999987
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
+|....++.++|.++..+|++++|++.|++++++ .|....+++++|.+|..+|++++|+..|++++++
T Consensus 73 ----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 73 ----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2445788999999999999999999999999998 5777899999999999999999999999999986
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
+|....++.++|.++...|++++|++.+++++++...
T Consensus 141 --------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 141 --------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp --------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred --------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 4666778999999999999999999999999998765
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=1.9e-17 Score=144.19 Aligned_cols=207 Identities=12% Similarity=0.025 Sum_probs=175.1
Q ss_pred chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (519)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (519)
.|....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 71 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD--------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI---- 71 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence 46667789999999999999999999999998862 223567889999999999999999999999987
Q ss_pred cCCCChhhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 279 RGTESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
.|....++..+|.++... |++++|+.+++++++ .+..|....++..+|.++...|++++|+.+++++++
T Consensus 72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345577899999999999 999999999999987 134566778899999999999999999999999988
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHH
Q 010063 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437 (519)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 437 (519)
. .++. ..++..+|.++...|++++|..++++++... + ......+..++.++...|++++|..+
T Consensus 142 ~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 142 A-------QPQF---PPAFKELARTKMLAGQLGDADYYFKKYQSRV-----E--VLQADDLLLGWKIAKALGNAQAAYEY 204 (225)
T ss_dssp H-------STTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----C--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h-------CCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 7 2333 3466889999999999999999999998864 1 02234567788899999999999999
Q ss_pred HHHHHHH
Q 010063 438 LRICLDI 444 (519)
Q Consensus 438 ~~~al~~ 444 (519)
++.+...
T Consensus 205 ~~~~~~~ 211 (225)
T 2vq2_A 205 EAQLQAN 211 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988763
No 70
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=1.6e-17 Score=144.67 Aligned_cols=207 Identities=11% Similarity=0.010 Sum_probs=174.9
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
.|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 71 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI---- 71 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence 4566788999999999999999999999999986 4555788999999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063 321 YGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (519)
.|....++..+|.++... |++++|+.+++++++. +..+....++..+|.++...|++++|+.+++++
T Consensus 72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD--------PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS--------TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC--------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344456889999999999 9999999999999871 223333557789999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063 400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479 (519)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 479 (519)
+... |....++..+|.++...|++++|..++++++... + ......+..++.++...|+.++|..+
T Consensus 140 ~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 140 LAAQ--------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-----E--VLQADDLLLGWKIAKALGNAQAAYEY 204 (225)
T ss_dssp HHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----C--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 8752 3345678899999999999999999999998853 2 03445567888899999999999999
Q ss_pred HHHHHHH
Q 010063 480 VLEALYI 486 (519)
Q Consensus 480 ~~~a~~~ 486 (519)
++.+.+.
T Consensus 205 ~~~~~~~ 211 (225)
T 2vq2_A 205 EAQLQAN 211 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=5.5e-18 Score=151.42 Aligned_cols=210 Identities=12% Similarity=0.090 Sum_probs=177.4
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
.+..+..++.+|..++..|++++|+..|++++... ++++....+++.+|.++...|++++|+..|++++...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---- 82 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY---- 82 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----
Confidence 55667899999999999999999999999988764 4555667789999999999999999999999999873
Q ss_pred CCCCHHHHHHHHHHHHHHhh--------cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH--------------HHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGS--------IGRAKKAVEIYHRVITILELNRGTESADLVLPL--------------FSLGS 295 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la~ 295 (519)
++++....+++.+|.++.. .|++++|+..|+++++.. ++++....+. ..+|.
T Consensus 83 -p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~ 156 (261)
T 3qky_A 83 -QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAAR 156 (261)
T ss_dssp -TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778899999999999 999999999999999873 3344444444 88999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHhhccC
Q 010063 296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN----------GNAEEAVELYKKALRVIKDSNYM 365 (519)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~ 365 (519)
+|...|++++|+..|+++++.. ++++....++..+|.+|... |++++|+..++++++.
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~------- 224 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI------- 224 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-------
Confidence 9999999999999999999863 34555778999999999977 9999999999999987
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHH
Q 010063 366 SLDDSIMENMRIDLAELLHIVGRGQEGR 393 (519)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (519)
.|+++....+...++.++...++++++.
T Consensus 225 ~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 225 FPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5667777777788888888887776554
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=3.2e-18 Score=152.95 Aligned_cols=208 Identities=16% Similarity=0.148 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (519)
.....++.+|..+...|++++|+..|+++++. .++++....++..+|.++...|++++|+..|+++++..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----- 82 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY----- 82 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----
Confidence 34678889999999999999999999999875 33455558899999999999999999999999999873
Q ss_pred CCChhHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHH--------------HHHH
Q 010063 323 ENDGRVGMAMCSLAHAKCA--------NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR--------------IDLA 380 (519)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--------------~~la 380 (519)
++++....++..+|.++.. .|++++|+..|+++++. .|+++....+. ..+|
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-------YPNHELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-------CTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-------CcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999 99999999999999987 34444444444 7899
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc----------cCHHHHHHHHHHHHHHHHHhcC
Q 010063 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS----------KNFVEAERLLRICLDIMTKTVG 450 (519)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~ 450 (519)
.+|...|++++|+..|++++... ++++....++..+|.+|... |++++|+..|++++.. .
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-----~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-----F 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-----C
T ss_pred HHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-----C
Confidence 99999999999999999998853 34555778999999999977 9999999999999985 3
Q ss_pred CCCcchhHHHHHHHHHHHhcCChHHHH
Q 010063 451 PDDQSISFPMLHLGITLYHLNRDKEAE 477 (519)
Q Consensus 451 ~~~~~~~~~~~~la~~~~~~g~~~~A~ 477 (519)
|+++....+...++.++...++++++.
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 677777888888888888887776544
No 73
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.79 E-value=6e-18 Score=162.12 Aligned_cols=153 Identities=10% Similarity=0.001 Sum_probs=144.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCCh
Q 010063 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412 (519)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 412 (519)
...+..+..+|++++|+.++++++++..+. ++++++.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~--lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPV--FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTT--BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 344556778999999999999999998875 799999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.++.++++||.+|..+|++++|+.+|++|+++.+..+|++||.+......++.++..+|.+++|...|+++.+..
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997644
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.79 E-value=5.9e-19 Score=170.28 Aligned_cols=301 Identities=12% Similarity=0.030 Sum_probs=168.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhhhhhcCCCc
Q 010063 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL---KFVQSLLDMMSGIVDSLKDDE 199 (519)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~ 199 (519)
..+..+...|++++|+.+|+++.+. ..+.+++.+|.+|...|++ ++|+.+|+++.+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~------------g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------- 67 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL------------GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------TCCTGGGTCC---------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------
Confidence 4567788899999999999998654 1245677889999888888 8999999887643
Q ss_pred hHHHHHHHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHhcCCCC------------------------------HHH
Q 010063 200 PLLDAILLHMGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTS------------------------------ILL 244 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~------------------------------~~~ 244 (519)
...+++.+|.++...| ++++|+.+|+++++. +... +..
T Consensus 68 --~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-----g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 68 --SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-----GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY 140 (452)
T ss_dssp -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-----TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC
T ss_pred --CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC
Confidence 2235788888666655 888999999998762 1100 001
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhc
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 321 (519)
..+++.+|.+|...+.++++........+. .. ..++ .+++++|.+|...| ++++|+.+|+++.+.
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~---a~-~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----- 208 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKA---AL-NTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSR----- 208 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHH---HT-TTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHH---HH-cCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----
Confidence 123344444444444433333332222111 11 1122 26667777777777 777777777777663
Q ss_pred CCCChhHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH-H--HHcCChHHHH
Q 010063 322 GENDGRVGMAMCSLAHAKCANG-----NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL-L--HIVGRGQEGR 393 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~ 393 (519)
.+..+..+.++|.+| ..| ++++|+.+|+++. .. + ..+++++|.+ + ...+++++|+
T Consensus 209 ---g~~~a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa---~g-------~---~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 209 ---GTVTAQRVDSVARVL-GDATLGTPDEKTAQALLEKIA---PG-------Y---PASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp ---TCSCHHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG---GG-------S---THHHHHHHHHHHHSGGGCCHHHHH
T ss_pred ---CCHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc---CC-------C---HHHHHHHHHHHHhCCCCCCHHHHH
Confidence 233334456677766 344 5677777777664 11 1 2355677777 3 4567777777
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 010063 394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY 468 (519)
Q Consensus 394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 468 (519)
.+|+++.+. . ...+++++|.+|. .| ++++|+.+|+++. +....++++||.+|.
T Consensus 272 ~~~~~Aa~~-------g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----------~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 272 KYLDNGRAA-------D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----------GREVAADYYLGQIYR 329 (452)
T ss_dssp HHHHHHHHT-------T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHC-------C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----------CCCHHHHHHHHHHHH
Confidence 777777642 1 2456777777776 44 7777777777664 223456778887777
Q ss_pred h----cCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH
Q 010063 469 H----LNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFC 513 (519)
Q Consensus 469 ~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 513 (519)
. ..++++|..+|+++.+ ..++ .++++||.+|..
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~-------~g~~-----~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAAR-------NGQN-----SADFAIAQLFSQ 366 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHT-------TTCT-----THHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHHh-------hChH-----HHHHHHHHHHHh
Confidence 6 3478888888887765 2233 336788888753
No 75
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.79 E-value=8e-18 Score=161.24 Aligned_cols=153 Identities=10% Similarity=0.046 Sum_probs=146.8
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 010063 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 287 (519)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (519)
..+..+..+|+|++|+.++++++++.++.+|++||.++.++.++|.+|..+|+|++|+.++++++++.++..|+++|.++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 44556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
.++++||.+|..+|++++|+.++++|+++.+..+|++||.+.....+++.++..++.+++|+..|.++.+...
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=1.3e-16 Score=139.39 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (519)
..+..+|.++...|++++|+..|++++++. ++....++.++|.++...|++++|+.+++++++. .
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~ 72 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------N 72 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence 678899999999999999999999999872 2134567788999999999999999999999973 5
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCch----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010063 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS----IMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (519)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (519)
|....++..+|.++...|++++|+..++++++.. |+++ ....++..+|.++...|++++|+..|+++++
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 7788899999999999999999999999999873 3333 2345789999999999999999999999987
Q ss_pred HHHHhhCCCChh--HHHHHHHHHHHHHhccCH---------------------------HHHHHHHHHHHHHHHHhcCCC
Q 010063 402 ITEKYKGKEHPS--FVTHLLNLAASYSRSKNF---------------------------VEAERLLRICLDIMTKTVGPD 452 (519)
Q Consensus 402 ~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~ 452 (519)
+ .|. ...++.++|.+|...|+. ++|+.++++++++ .|+
T Consensus 146 ~--------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~ 212 (228)
T 4i17_A 146 V--------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-----SPN 212 (228)
T ss_dssp S--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTT
T ss_pred c--------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCC
Confidence 3 567 778999999999999988 8888888888874 233
Q ss_pred CcchhHHHHHHHHHH
Q 010063 453 DQSISFPMLHLGITL 467 (519)
Q Consensus 453 ~~~~~~~~~~la~~~ 467 (519)
...+...++.+.
T Consensus 213 ---~~~~~~~l~~i~ 224 (228)
T 4i17_A 213 ---RTEIKQMQDQVK 224 (228)
T ss_dssp ---CHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHH
Confidence 344445555543
No 77
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.76 E-value=9.1e-18 Score=161.98 Aligned_cols=220 Identities=13% Similarity=0.089 Sum_probs=168.1
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHhcCC
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRGT 281 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~ 281 (519)
+++.+|.+|...+.++++........... . ..++. +++.+|.+|...| ++++|+.+|+++.+.
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a---~-~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~------- 208 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAA---L-NTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR------- 208 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHH---T-TTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHH---H-cCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-------
Confidence 45666777776665555555433322221 1 12232 7889999999999 999999999999875
Q ss_pred CChhhHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-H--HHCCCHHHHHHHHH
Q 010063 282 ESADLVLPLFSLGSLFIKEG-----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA-K--CANGNAEEAVELYK 353 (519)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~ 353 (519)
.+..+..++++|.+| ..| ++++|+.+|+++. +....++.++|.+ + ...+++++|+.+|+
T Consensus 209 -g~~~a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 209 -GTVTAQRVDSVARVL-GDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp -TCSCHHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 445566778999998 456 7899999999885 2344578899998 4 56899999999999
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh-
Q 010063 354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-----RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR- 427 (519)
Q Consensus 354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~- 427 (519)
++.+. + + ..+++++|.+|. .| ++++|+.+|+++. +....++++||.+|..
T Consensus 276 ~Aa~~-------g--~---~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----------~g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 276 NGRAA-------D--Q---PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----------GREVAADYYLGQIYRRG 331 (452)
T ss_dssp HHHHT-------T--C---HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----------TTCHHHHHHHHHHHHTT
T ss_pred HHHHC-------C--C---HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHCC
Confidence 98864 1 2 346689999998 56 9999999999875 2234688999999987
Q ss_pred ---ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 010063 428 ---SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALY 485 (519)
Q Consensus 428 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~ 485 (519)
..++++|..+|+++.+ ..+ ..+.++||.+|.. ..++.+|..+|+++.+
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~-------~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAAR-------NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHT-------TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHh-------hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 4499999999999986 222 4677899999985 5689999999999976
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=1e-15 Score=151.60 Aligned_cols=329 Identities=10% Similarity=-0.007 Sum_probs=210.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (519)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (519)
...+. +...|++++|...|+++++. .|....++..++..+...|++++|...|++++... |.
T Consensus 17 ~~l~~-~~~~~~~~~a~~~~e~al~~----------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-------p~ 78 (530)
T 2ooe_A 17 SILIR-EAQNQPIDKARKTYERLVAQ----------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-------LH 78 (530)
T ss_dssp HHHHH-HHHSSCHHHHHHHHHHHHTT----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-------CC
T ss_pred HHHHH-HHHhCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CC
Confidence 33444 35689999999999999987 78888999999999999999999999999998764 22
Q ss_pred HHHHHHHHHH-HHHccccHHHHHH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh---------cCCHHHHHHH
Q 010063 202 LDAILLHMGS-MYSTLENYEKSML----VYQRVINVLESRYGKTSILLVTSLLGMAKVLGS---------IGRAKKAVEI 267 (519)
Q Consensus 202 ~~~~~~~l~~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~ 267 (519)
. ..|...+. .....|++++|.+ .|++++.. .+. ++.....+...+..... .|++++|..+
T Consensus 79 ~-~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 79 I-DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp H-HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 2 23555554 4445688887776 55555543 222 22223444455555443 6889999999
Q ss_pred HHHHHHHH--------HH---------------------------------------hcCC----CChh-------hHHH
Q 010063 268 YHRVITIL--------EL---------------------------------------NRGT----ESAD-------LVLP 289 (519)
Q Consensus 268 ~~~al~~~--------~~---------------------------------------~~~~----~~~~-------~~~~ 289 (519)
|+++++.- .. .... -.|. ....
T Consensus 153 y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 153 YQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 98887520 00 0000 0000 0011
Q ss_pred HHHHHHHHHh----CCCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-------CCCHH-------H
Q 010063 290 LFSLGSLFIK----EGKA----VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-------NGNAE-------E 347 (519)
Q Consensus 290 ~~~la~~~~~----~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~ 347 (519)
+......... .++. .+++..|++++... |....++..+|..+.. .|+++ +
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 1111110000 0111 24555666666542 4445678888888876 79987 8
Q ss_pred HHHHHHHHHH-HHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 010063 348 AVELYKKALR-VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426 (519)
Q Consensus 348 A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 426 (519)
|...++++++ . .|+. ..++..++.++...|++++|...|++++++ .+..+ ..++..++.++.
T Consensus 305 A~~~~~~Al~~~-------~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~ 367 (530)
T 2ooe_A 305 AANIYERAISTL-------LKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFAR 367 (530)
T ss_dssp HHHHHHHHTTTT-------CSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------Cccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHH
Confidence 8888888875 3 2333 456788999999999999999999999874 12222 247888888888
Q ss_pred hccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHH
Q 010063 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFV 505 (519)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 505 (519)
..|++++|...|++++.. .|.....+...+.+ +...|++++|...|+++++.. ++++ ..+.
T Consensus 368 ~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-----p~~~-----~~~~ 429 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIP-----EYVL 429 (530)
T ss_dssp HHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-----TTCH-----HHHH
T ss_pred HhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-----CCCH-----HHHH
Confidence 889999999999988762 12223333344433 335788888888888887754 3333 2355
Q ss_pred HHHHHHHHhhhc
Q 010063 506 LFGLVWFCLLLY 517 (519)
Q Consensus 506 ~l~~~~~~lg~~ 517 (519)
.++..+..+|++
T Consensus 430 ~~~~~~~~~g~~ 441 (530)
T 2ooe_A 430 AYIDYLSHLNED 441 (530)
T ss_dssp HHHHHHTTTTCH
T ss_pred HHHHHHHhCCCH
Confidence 666666666654
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.75 E-value=2.3e-16 Score=137.70 Aligned_cols=170 Identities=12% Similarity=0.165 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (519)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (519)
+..+..+|.++...|++++|+..|++++.... +.++ .+++.+|.++...|++++|+..+++++.. .
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~ 72 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN---NQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKK--------N 72 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---TCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC---CCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence 47899999999999999999999999998752 1222 35777999999999999999999999874 3
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
|....++..+|.++...|++++|+..+++++++. ++++ ..+.++..+|.++...|++++|+..|++++++
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~- 146 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV- 146 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-
Confidence 4457889999999999999999999999999872 2222 12367999999999999999999999999874
Q ss_pred HHhcCCCChh--HHHHHHHHHHHHHHCCCH---------------------------HHHHHHHHHHHHH
Q 010063 318 TKVYGENDGR--VGMAMCSLAHAKCANGNA---------------------------EEAVELYKKALRV 358 (519)
Q Consensus 318 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~ 358 (519)
+|. ...++.++|.++...|+. ++|+.++++++++
T Consensus 147 -------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 147 -------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp -------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577 788999999999998888 8888888888887
No 80
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.74 E-value=4.2e-16 Score=133.30 Aligned_cols=193 Identities=15% Similarity=0.124 Sum_probs=154.2
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 010063 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 335 (519)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 335 (519)
...|++++|...++.... +.+....++..+|.++...|++++|+.++++++.+.+... +.+....++.++
T Consensus 3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH
Confidence 467999999985544321 2346688999999999999999999999999999987652 456678899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010063 336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415 (519)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 415 (519)
|.++...|++++|+.++++++.+.+.. +.++.....++.++|.++...|++++|+.++++++.+.+... +.....
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~ 147 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASL---PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIA 147 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHc---CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHH
Confidence 999999999999999999999998863 324446778889999999999999999999999999876652 344556
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 465 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 465 (519)
.++..+|.++...|++++|..++++++++.++. .+......++..++.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~ 195 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNG 195 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccc
Confidence 778999999999999999999999999998875 233334444444443
No 81
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.74 E-value=6.3e-16 Score=132.19 Aligned_cols=194 Identities=12% Similarity=0.060 Sum_probs=155.9
Q ss_pred HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010063 214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL 293 (519)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 293 (519)
...|++++|...++... .+......++..+|.++...|++++|+.++++++++.+... +.+....++.++
T Consensus 3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH
Confidence 46789999998554331 13335688899999999999999999999999999987754 456778899999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHH
Q 010063 294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 373 (519)
Q Consensus 294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 373 (519)
|.++...|++++|+.++++++.+.+.. +.+......++.++|.++...|++++|+.++++++.+.+.. .+.....
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~ 147 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA----DDQVAIA 147 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----cchHHHH
Confidence 999999999999999999999998754 22223677889999999999999999999999999987763 4555667
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 010063 374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424 (519)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 424 (519)
.++.++|.++...|++++|..++++++++.++.. +......++..++.+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE--DSEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHhcccch
Confidence 7789999999999999999999999999988762 334445555555543
No 82
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.73 E-value=5.3e-16 Score=140.93 Aligned_cols=195 Identities=9% Similarity=0.018 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC
Q 010063 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (519)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (519)
....+...+..+...|++++|+..+.++++.... .+........+..+|.++...|++++|+.++++++++.... .
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~ 149 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--I 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--S
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--C
Confidence 3344667888999999999999999998875321 01112345567789999999999999999999999764332 1
Q ss_pred CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
+......+++++|.+|...|++++|+.++++++++.+... +.+. ...++.++|.+|..+|++++|+.++++++++..
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334577999999999999999999999999999877652 2333 337899999999999999999999999999976
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHh
Q 010063 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEG-RELLEECLLITEKY 406 (519)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 406 (519)
. ..+......++.++|.+|...|++++| ..++++++.+.+..
T Consensus 228 ~----~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 228 R----INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp H----TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred h----cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 5 244555677899999999999999999 88899999988765
No 83
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.73 E-value=9.6e-16 Score=139.23 Aligned_cols=194 Identities=9% Similarity=0.027 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhh---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL---VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (519)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (519)
.....+...+..+...|++++|...++++++.. +..+.. ...+..+|.++...|++++|+.++++++.+...
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence 334445566788899999999999999998741 122322 345567999999999999999999999985322
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (519)
. .+....+.++.++|.+|...|++++|+.+++++++..+.. +.+.+....++.++|.+|..+|++++|+.+++++
T Consensus 148 ~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 148 G--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp C--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred c--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 2233456689999999999999999999999999988763 3467777889999999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHh
Q 010063 400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKN-FVEAERLLRICLDIMTKT 448 (519)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~ 448 (519)
+++..+. .+.+..+.++.++|.+|..+|+ +++|+.+|++|+.+++..
T Consensus 223 l~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 223 IEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 9998775 3456678999999999999995 699999999999999875
No 84
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.73 E-value=9.8e-16 Score=139.18 Aligned_cols=192 Identities=11% Similarity=0.015 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhh
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE---VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (519)
...+...+..+...|++++|+..++++++. ....+.. ...+..+|.++...|++++|+.++++++.+...
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKK-------EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-------ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence 344666788899999999999999998874 2333332 334556899999999999999999999986543
Q ss_pred cCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (519)
. .+......++.++|.+|...|++++|+.+|+++++..+.. ..+.+..+.++.++|.+|..+|++++|+.++++++++
T Consensus 148 ~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 148 G-IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp C-SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2 2334456679999999999999999999999999988764 2356778889999999999999999999999999999
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHh
Q 010063 275 LELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTKV 320 (519)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~ 320 (519)
..... +....+.++.++|.+|..+|+ +++|+.++++++.+++..
T Consensus 226 ~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 226 SCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHTT--BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcC--cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 87753 455678999999999999995 699999999999998876
No 85
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.72 E-value=7.4e-15 Score=133.36 Aligned_cols=192 Identities=11% Similarity=-0.003 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhh
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI---EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (519)
....+...+..+...|++++|++.++++++. .+..+ .....+..+|.++...|++++|+..+++++....
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-------EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------CCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcc-------ccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3445778888999999999999999998875 22222 2345567799999999999999999999998765
Q ss_pred hcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010063 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (519)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (519)
.. .+......+++.+|.+|...|++++|+.+|++++++.+... +.+. ...++.++|.+|...|++++|+.++++++
T Consensus 147 ~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 147 TG-IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp CS-SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cC-CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 42 33344567899999999999999999999999999877642 3333 34789999999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHh
Q 010063 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDA-ESVFSRILKIYTKV 320 (519)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 320 (519)
++..... +....+.++.++|.+|...|++++| ..++++++.+.+..
T Consensus 224 ~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 224 EISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 9975532 3455688999999999999999999 88899999988765
No 86
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=6.2e-15 Score=142.19 Aligned_cols=239 Identities=8% Similarity=-0.028 Sum_probs=196.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC----------chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063 165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD----------EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (519)
Q Consensus 165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (519)
....|..+...|+|++|++.|.++++.....+.. ......++..+|.+|...|++++|..++.+++....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4456777889999999999999998865432211 123455689999999999999999999999999876
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010063 235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314 (519)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 314 (519)
.. .+......+...++.++...|++++|+.++++++.+..... +.+....++.++|.+|...|++++|..++++++
T Consensus 87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 53 22234456677889999999999999999999999987764 456678899999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 010063 315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394 (519)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (519)
...... .+.+..+.++..++.+|...|++++|..++++++.+.... ..++......+..+|.++...|++++|..
T Consensus 163 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 163 REFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI---YCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC---CCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 877654 3567788899999999999999999999999999987763 33445567788899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCh
Q 010063 395 LLEECLLITEKYKGKEHP 412 (519)
Q Consensus 395 ~~~~al~~~~~~~~~~~~ 412 (519)
+|.+++............
T Consensus 238 ~~~~a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 238 YFFESFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHHHHHTTTSSCH
T ss_pred HHHHHHHHhhhhhhhhhH
Confidence 999999988776444433
No 87
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=3.4e-14 Score=140.56 Aligned_cols=306 Identities=15% Similarity=0.076 Sum_probs=210.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HHHhcCChHHHHH----HHHHHHhhhhhc
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIAL-GYVYIGDLKFVQS----LLDMMSGIVDSL 195 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~~~~~~~~~ 195 (519)
....+......|++++|...|++++.. .|. ..++..++. .....|++++|.+ .|++++...
T Consensus 49 w~~~~~~~~~~~~~~~a~~~~~ral~~----------~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~--- 114 (530)
T 2ooe_A 49 WKLYIEAEIKAKNYDKVEKLFQRCLMK----------VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI--- 114 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTT----------CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC---
Confidence 556677778899999999999999876 443 446666664 4456788888776 666665543
Q ss_pred CCCchHHHHHHHHHHHHHHc---------cccHHHHHHHHHHHHHHHHHhcCCCCH-HH---------------------
Q 010063 196 KDDEPLLDAILLHMGSMYST---------LENYEKSMLVYQRVINVLESRYGKTSI-LL--------------------- 244 (519)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~-~~--------------------- 244 (519)
+ .++....+|...+..... .|++++|...|++++.. ..... ..
T Consensus 115 g-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-----P~~~~~~~~~~~~~~e~~~~~~~~~~~l~ 188 (530)
T 2ooe_A 115 G-MEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-----PMINIEQLWRDYNKYEEGINIHLAKKMIE 188 (530)
T ss_dssp T-TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-----CCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred C-CCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-----hhhhHHHHHHHHHHHHHhhchhHHHHHHH
Confidence 2 122223345555555543 78999999999998752 00000 00
Q ss_pred -----------------------------------------HHHHHHHHHHHhh----cCCH----HHHHHHHHHHHHHH
Q 010063 245 -----------------------------------------VTSLLGMAKVLGS----IGRA----KKAVEIYHRVITIL 275 (519)
Q Consensus 245 -----------------------------------------~~~~~~la~~~~~----~g~~----~~A~~~~~~al~~~ 275 (519)
...+......... .++. .+++..|++++..
T Consensus 189 ~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~- 267 (530)
T 2ooe_A 189 DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV- 267 (530)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-
Confidence 0011111000000 0111 2455666666665
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHh-------CCCHH-------HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 010063 276 ELNRGTESADLVLPLFSLGSLFIK-------EGKAV-------DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341 (519)
Q Consensus 276 ~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 341 (519)
.|....++..+|..+.. .|+++ +|...++++++. ..|.....+..+|.++..
T Consensus 268 -------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-------~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 268 -------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLKKNMLLYFAYADYEES 333 (530)
T ss_dssp -------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-------TCSSCHHHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHh
Confidence 34557888899998886 79987 777777777751 245666789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 010063 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL 421 (519)
Q Consensus 342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 421 (519)
.|++++|...|+++++. .+..+ ..++..++.++.+.|++++|+..|+++++. .|.....+...
T Consensus 334 ~g~~~~A~~~~~~al~~-------~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~ 396 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI-------EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTA 396 (530)
T ss_dssp TTCHHHHHHHHHHHHHS-------SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHH
T ss_pred cCCHHHHHHHHHHHhCc-------cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHH
Confidence 99999999999999985 33332 236788999999999999999999999863 12222333344
Q ss_pred HHH-HHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 422 AAS-YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 422 a~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
+.+ +...|++++|...|+++++.. |....++..++.++...|+.++|..+|++++..
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~--------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 443 446899999999999999853 444567789999999999999999999999874
No 88
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1e-15 Score=140.06 Aligned_cols=223 Identities=9% Similarity=0.013 Sum_probs=178.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHh-hhhhcCCCc
Q 010063 135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-------IGDL-------KFVQSLLDMMSG-IVDSLKDDE 199 (519)
Q Consensus 135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~ 199 (519)
++|+..|++++.. .|..+.++..+|..+.. .|++ ++|...|++++. +.
T Consensus 33 ~~a~~~~~~al~~----------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~------- 95 (308)
T 2ond_A 33 KRVMFAYEQCLLV----------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL------- 95 (308)
T ss_dssp HHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-------
T ss_pred HHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-------
Confidence 6888999999988 77788899999988864 5886 899999999987 43
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
|....++..+|.++...|++++|...|++++++ .++++. .++..+|.++...|++++|+..|+++++.
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----- 163 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARED----- 163 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----
Confidence 444556899999999999999999999999874 233332 27888999999999999999999999875
Q ss_pred CCCChhhHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
.|.....+...+.+.. ..|++++|...|+++++.. |.....+..++.++...|++++|..+|++++..
T Consensus 164 ---~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 164 ---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp ---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred ---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2333455555555543 3799999999999999863 444567899999999999999999999999874
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (519)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (519)
.. ..+ .....++..++..+...|++++|..+++++++..
T Consensus 233 ~~----l~p--~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 233 GS----LPP--EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp SS----SCG--GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred cC----CCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 10 011 1224566788999999999999999999998865
No 89
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5.3e-15 Score=142.67 Aligned_cols=239 Identities=11% Similarity=0.039 Sum_probs=194.4
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---------TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (519)
....|..+...|++++|++.|.++++..+..... .......++..+|.+|...|++++|.+++.+++.+..
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4456777888999999999999998764322110 0123456788999999999999999999999999876
Q ss_pred HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 010063 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (519)
... +......+...++.++...|++++|+.++++++.+..... +.+..+.++.++|.++...|++++|..++++++
T Consensus 87 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 87 QFA--KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp TSC--HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hcc--chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 542 2233456778899999999999999999999999987753 455678889999999999999999999999999
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHH
Q 010063 357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436 (519)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (519)
..... ..+.+....++..++.+|...|++++|..++++++.+..... ..+......+..+|.++...|++++|..
T Consensus 163 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 163 REFKK----LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHTT----SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHh----cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88765 355677788999999999999999999999999999887652 2223456788899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC
Q 010063 437 LLRICLDIMTKTVGPDD 453 (519)
Q Consensus 437 ~~~~al~~~~~~~~~~~ 453 (519)
+|.+++...........
T Consensus 238 ~~~~a~~~~~~~~~~~~ 254 (434)
T 4b4t_Q 238 YFFESFESYHNLTTHNS 254 (434)
T ss_dssp HHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHhhhhhhhhh
Confidence 99999998877644443
No 90
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.71 E-value=2.3e-16 Score=148.72 Aligned_cols=115 Identities=16% Similarity=0.075 Sum_probs=112.4
Q ss_pred HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 010063 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464 (519)
Q Consensus 385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 464 (519)
..|+|++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||+++.++++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcch
Q 010063 465 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 499 (519)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 499 (519)
.+|..+|++++|+.+|++|+++.+..+|++||.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999999999999999874
No 91
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=5e-15 Score=135.50 Aligned_cols=222 Identities=12% Similarity=0.074 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHc-------cccH-------HHHHHHHHHHHHHHHHhcCCCCHHH
Q 010063 179 KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST-------LENY-------EKSMLVYQRVINVLESRYGKTSILL 244 (519)
Q Consensus 179 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~ 244 (519)
++|+..|++++... |....+|+.+|..+.. .|++ ++|+..|++++... .|..
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-------~p~~ 98 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------LKKN 98 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-------TTTC
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-------Cccc
Confidence 68888999998876 4445568888888763 4775 89999999998721 2334
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL-PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (519)
..++..+|.++...|++++|...|++++++ .|.... ++..+|.++...|++++|...|+++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------- 163 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED------- 163 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------
Confidence 667889999999999999999999999985 333333 8899999999999999999999999874
Q ss_pred CChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 324 NDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 324 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
.|.....+...+.+... .|++++|...|+++++... +. ..++..++.++...|++++|+.+|++++..
T Consensus 164 -~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-------~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 164 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-------DI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp -TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------Cc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 22223445555555433 7999999999999999842 23 356688999999999999999999999873
Q ss_pred HHHhhCCCCh-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063 403 TEKYKGKEHP-SFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 403 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
. ...| .....+..++..+...|++++|..+++++++..
T Consensus 233 ~-----~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 233 G-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp S-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred c-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 1 0133 245678888999999999999999999999853
No 92
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.69 E-value=2.9e-16 Score=148.53 Aligned_cols=134 Identities=10% Similarity=-0.074 Sum_probs=125.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHH
Q 010063 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP 459 (519)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 459 (519)
..-+..+|++++|+..+++++++.++.+|++||.++.++.++|.+|..+|+|++|+.++++++.+.++.+|++||.++..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhh
Q 010063 460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLL 515 (519)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg 515 (519)
+++||.+|..+|++++|+.++++|+++.+..+|++||.+ ...+.+|+.+..+++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~--~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI--EDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988 456788998887664
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.69 E-value=8.3e-15 Score=127.33 Aligned_cols=177 Identities=13% Similarity=0.066 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
...++.+|..+...|++++|+..|+++++. .++++....++..+|.+|...|++++|+..|+++++.. ++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cC
Confidence 456788999999999999999999999986 33455567889999999999999999999999999863 45
Q ss_pred ChhHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHhhccCCCCchHHHH------------
Q 010063 325 DGRVGMAMCSLAHAKCA------------------NGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN------------ 374 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------ 374 (519)
++....++..+|.++.. .|++++|+..|+++++.. |+.+....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHHHHHHHH
Confidence 56666788888988876 678999999999998863 33332221
Q ss_pred --HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 375 --MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 375 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
....+|.+|...|++++|+..|+++++.. ++.+....++..+|.+|..+|++++|+..++++..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 22578999999999999999999999864 44566678999999999999999999999997766
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.69 E-value=5.1e-15 Score=128.68 Aligned_cols=177 Identities=10% Similarity=-0.006 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010063 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366 (519)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 366 (519)
...++.+|..+...|++++|+..|+++++. .+.++....++..+|.++...|++++|+..|+++++. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-------~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-------N 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------C
Confidence 467889999999999999999999999985 2345556778999999999999999999999999987 4
Q ss_pred CCchHHHHHHHHHHHHHHH------------------cCChHHHHHHHHHHHHHHHHhhCCCChhHH-------------
Q 010063 367 LDDSIMENMRIDLAELLHI------------------VGRGQEGRELLEECLLITEKYKGKEHPSFV------------- 415 (519)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------- 415 (519)
|+++....++..+|.++.. .|++++|+..|+++++.. ++++...
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHH
Confidence 5555555677888888876 578999999999988753 2333222
Q ss_pred -HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 416 -THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 416 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
.....+|.+|...|++++|+..|+++++.. |+++....++..+|.+|..+|++++|+..++++..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 122578999999999999999999999853 55666678899999999999999999999987765
No 95
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.68 E-value=3.1e-15 Score=125.63 Aligned_cols=173 Identities=16% Similarity=0.101 Sum_probs=148.1
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
.......+..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+.+++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---- 72 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---- 72 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Confidence 44567788999999999999999999998876543 2234568899999999999999999999998862
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
|....++..+|.++...|++++|..+++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 73 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~- 139 (186)
T 3as5_A 73 ----PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL- 139 (186)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-
Confidence 223567889999999999999999999999987 3455688899999999999999999999999985
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
.|....++..+|.++...|++++|..+++++++....
T Consensus 140 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 140 -------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred -------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 2444568899999999999999999999999988643
No 96
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.67 E-value=2.8e-15 Score=125.94 Aligned_cols=170 Identities=16% Similarity=0.097 Sum_probs=146.1
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
......+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD----- 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 445678889999999999999999999998763 3445678899999999999999999999999987
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
.++. ..++..+|.++...|++++|..++++++.. .|....++..+|.++...|++++|+.++++++.
T Consensus 72 --~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 72 --APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp --CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 2333 346688999999999999999999999875 233456788999999999999999999999988
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
. .|....++..+|.++...|++++|..++++++++.
T Consensus 139 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 139 L--------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred c--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4 24446788999999999999999999999999876
No 97
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=2.6e-14 Score=147.24 Aligned_cols=254 Identities=11% Similarity=0.005 Sum_probs=153.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHH
Q 010063 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA 204 (519)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 204 (519)
|..+...|.+++|..+|+++-.. .. .+...+...|++++|.++++++ ....
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~-----------~~------A~~VLie~i~nldrAiE~Aerv------------n~p~ 1106 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN-----------TS------AVQVLIEHIGNLDRAYEFAERC------------NEPA 1106 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH-----------HH------HHHHHHHHHhhHHHHHHHHHhc------------CCHH
Confidence 55666777777777777764211 00 0111223556666666666543 1123
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (519)
+|+.+|.++...|++++|+..|.++ .+ ...+..+|.++...|++++|+++|..+.+..+.
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA---------dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------- 1166 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA---------DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARE------- 1166 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc---------CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-------
Confidence 4777777777777777777777664 11 345566777777777777777777777664211
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (519)
..+-..+|.+|.+.+++++.. .| +. .+.. ..+..+|..+...|+|++|..+|.++-
T Consensus 1167 --~~Idt~LafaYAKl~rleele-~f---I~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~-------- 1222 (1630)
T 1xi4_A 1167 --SYVETELIFALAKTNRLAELE-EF---IN---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS-------- 1222 (1630)
T ss_pred --ccccHHHHHHHHhhcCHHHHH-HH---Hh---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh--------
Confidence 011123777777777766432 22 11 1222 244567888888888888888777741
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
.|..++.++.+.|++++|++.+++|.. ..+|...+.++...|++..|..+... +.
T Consensus 1223 ----------ny~rLA~tLvkLge~q~AIEaarKA~n-------------~~aWkev~~acve~~Ef~LA~~cgl~-Ii- 1277 (1630)
T 1xi4_A 1223 ----------NFGRLASTLVHLGEYQAAVDGARKANS-------------TRTWKEVCFACVDGKEFRLAQMCGLH-IV- 1277 (1630)
T ss_pred ----------HHHHHHHHHHHhCCHHHHHHHHHHhCC-------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hh-
Confidence 336677777788888888877777622 14555666666666666666665543 11
Q ss_pred HHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
.+++ .+..++..|...|.+++|+.++++++.+
T Consensus 1278 -------v~~d---eLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1278 -------VHAD---ELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred -------cCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 1222 2346677777788888888887777654
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.66 E-value=7.2e-16 Score=156.39 Aligned_cols=200 Identities=15% Similarity=0.150 Sum_probs=162.8
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (519)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (519)
...|++++|++.++++++..... .....|..+.++..+|.++...|++++|+..++++++.. |....+++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~--~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~ 472 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDA--DGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-------GWRWRLVWY 472 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCCHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccc--cccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cchHHHHHH
Confidence 77899999999999998211000 012267778899999999999999999999999999875 444567999
Q ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 010063 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (519)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (519)
+|.++...|++++|+..|++++++. |....++.++|.++...|++++ +..|++++++ +|....
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~ 535 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTF--------PGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVIS 535 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHH
Confidence 9999999999999999999999873 3336778899999999999999 9999999997 566788
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHhh
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA-VELYKKALRVIKDS 362 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 362 (519)
+++++|.++...|++++|+..|++++++ +|....++.++|.++...++.+++ ..-++++++.....
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999999999873 678888999999999888876666 67777787777653
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.66 E-value=6.5e-16 Score=156.73 Aligned_cols=200 Identities=14% Similarity=0.104 Sum_probs=161.3
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 010063 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 335 (519)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 335 (519)
...|++++|++.++++++..-......+|....++..+|.++...|++++|+..++++++. +|....++.++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence 7889999999999999822111112235777889999999999999999999999999986 35556789999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010063 336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415 (519)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 415 (519)
|.++...|++++|+..|++++++ .+++ ..++.++|.++...|++++ +..|++++++ +|...
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l-------~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~ 534 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT-------FPGE---LAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVI 534 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-------STTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchH
Confidence 99999999999999999999998 3333 3466899999999999999 9999999985 45556
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHh
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA-EKLVLEALYIREIA 490 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~ 490 (519)
.++.++|.++..+|++++|+..|+++++ .+|....++.++|.++...|+.+++ ..-++++++..+..
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~--------l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPP--------TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCT--------TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcc--------cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 7899999999999999999999999987 3577788899999999888876666 67777887777654
No 100
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.66 E-value=3.9e-15 Score=140.30 Aligned_cols=124 Identities=9% Similarity=0.117 Sum_probs=118.8
Q ss_pred HHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010063 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292 (519)
Q Consensus 213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 292 (519)
....|+|++|+.++++++++.++.++++||.++.++.++|.+|..+|+|++|+.++++++++.++..|+++|.++..+++
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 010063 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA 336 (519)
Q Consensus 293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 336 (519)
||.+|..+|++++|+.++++|+++.+..+|++||.+.....+|.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999998877764
No 101
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.66 E-value=1.1e-14 Score=119.32 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=137.1
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (519)
.+..+.++..+|.++...|++++|+.+++++++..+.. .++.....++..+|.++...|++++|+.++++++.+..
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999998763 45566677889999999999999999999999999987
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010063 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (519)
.. .+.+....++.++|.++...|++++|+.++++++.+.... .+.+....++..+|.++...|++++|..++++++
T Consensus 81 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 81 QL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 65 2445567889999999999999999999999999988765 3446677889999999999999999999999999
Q ss_pred HHHH
Q 010063 485 YIRE 488 (519)
Q Consensus 485 ~~~~ 488 (519)
++.+
T Consensus 157 ~~~~ 160 (164)
T 3ro3_A 157 EISR 160 (164)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9874
No 102
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.66 E-value=2.3e-14 Score=117.45 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=137.9
Q ss_pred CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (519)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (519)
+.+..+.++..+|.++...|++++|+.++++++++.+... +......++..+|.++...|++++|+.++++++++...
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3456688899999999999999999999999999987753 34556788999999999999999999999999999876
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 010063 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (519)
. .+.+....++.++|.++...|++++|+.+++++++..... .+++....++..+|.++...|++++|..+++++
T Consensus 82 ~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 82 L--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred h--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5 2344567789999999999999999999999999998763 456677788899999999999999999999999
Q ss_pred HHHHHH
Q 010063 400 LLITEK 405 (519)
Q Consensus 400 l~~~~~ 405 (519)
+++.++
T Consensus 156 ~~~~~~ 161 (164)
T 3ro3_A 156 LEISRE 161 (164)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 988754
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.66 E-value=9.8e-15 Score=125.06 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHHCCCHHHHHH
Q 010063 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS----------------LAHAKCANGNAEEAVE 350 (519)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 350 (519)
+..+...|..+...|++++|+..|++++.. +|....++.. +|.++...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456778899999999999999999999986 5666677777 9999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccC
Q 010063 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430 (519)
Q Consensus 351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 430 (519)
.|+++++. .|++ ..++.++|.++...|++++|+..|++++++ .|....++.++|.+|...|+
T Consensus 76 ~~~~al~~-------~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 76 FYKELLQK-------APNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHH-------CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhH
Confidence 99999998 3433 456789999999999999999999999985 45566789999999987765
Q ss_pred H--HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 431 F--VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 431 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
. ..+...+++++. +. | ...+++.+|.++...|++++|+.+|++++++.
T Consensus 138 ~~~~~~~~~~~~~~~-------~~-~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 138 QEKKKLETDYKKLSS-------PT-K-MQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHC---C-------CC-H-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhC-------CC-c-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4 445555555432 22 2 23356788999999999999999999999764
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.65 E-value=9.8e-16 Score=123.59 Aligned_cols=147 Identities=15% Similarity=0.097 Sum_probs=122.1
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 010063 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 287 (519)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (519)
.||.++..+|++++|+..+++++.. .|.....++.+|.+|...|++++|+.+|++++++ .|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 4788999999999999999988653 4666778889999999999999999999999998 56778
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHhhccCC
Q 010063 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL-YKKALRVIKDSNYMS 366 (519)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~ 366 (519)
.++..+|.+|...|++++|+..|++++++ +|....++.++|.++...|++++|... +++++++ .
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-------~ 130 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-------F 130 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-------S
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-------C
Confidence 99999999999999999999999999986 466677899999999999999887665 6899988 4
Q ss_pred CCchHHHHHHHHHHHHHHHcCC
Q 010063 367 LDDSIMENMRIDLAELLHIVGR 388 (519)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~ 388 (519)
|+++. ++...+.++..+|+
T Consensus 131 P~~~~---~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 PGSPA---VYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHH---HHHHHHHHHHTCCC
T ss_pred cCCHH---HHHHHHHHHHHhCc
Confidence 55544 45667888877775
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.65 E-value=7.2e-16 Score=124.38 Aligned_cols=147 Identities=12% Similarity=0.004 Sum_probs=121.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010063 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246 (519)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 246 (519)
.||.++...|++++|+..++++.... |.....++.+|.+|...|++++|+.+|++++++ +|....
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~-------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~ 66 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSP-------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK 66 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSH-------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 47888889999999999998876543 777777899999999999999999999999987 244477
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHHHHhcCCCC
Q 010063 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV-FSRILKIYTKVYGEND 325 (519)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~ 325 (519)
++..+|.+|...|++++|+..|++++++ .|....++.++|.+|...|++++|... +++++++ +
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------~ 130 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------F 130 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------C
Confidence 8999999999999999999999999998 566788999999999999999887765 5899986 3
Q ss_pred hhHHHHHHHHHHHHHHCCC
Q 010063 326 GRVGMAMCSLAHAKCANGN 344 (519)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~ 344 (519)
|....++...+.++...|+
T Consensus 131 P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 5555677788888888775
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.65 E-value=1.6e-14 Score=123.66 Aligned_cols=165 Identities=16% Similarity=0.170 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH----------------HHHHHHccccHHHHHHH
Q 010063 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH----------------MGSMYSTLENYEKSMLV 225 (519)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~ 225 (519)
+..+...|..+...|++++|+..|++++... |....+++. +|.++...|++++|+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4566788999999999999999999998875 666666777 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCH--
Q 010063 226 YQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA-- 303 (519)
Q Consensus 226 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-- 303 (519)
|++++++. |....++..+|.++...|++++|+..|++++++ .|....++.++|.+|...|+.
T Consensus 77 ~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 77 YKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHH
Confidence 99999872 344678999999999999999999999999997 567788999999999877643
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 304 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 304 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
..+...+++++. .+....++..+|..+...|++++|+.+|++++++
T Consensus 141 ~~~~~~~~~~~~---------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 141 KKLETDYKKLSS---------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHC---C---------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhC---------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344555555432 2223346778899999999999999999999987
No 107
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=1.2e-13 Score=142.42 Aligned_cols=300 Identities=13% Similarity=0.081 Sum_probs=206.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (519)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (519)
..|-+.+.+.+|...+-+.+..+.+...-. .....+.+|..+|.++...|++++|+..|.++ ++ ...
T Consensus 1070 ~IYkKa~~~~~A~~VLie~i~nldrAiE~A-ervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---------dD---~sa 1136 (1630)
T 1xi4_A 1070 AIFRKFDVNTSAVQVLIEHIGNLDRAYEFA-ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DD---PSS 1136 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---------CC---hHH
Confidence 334445556665444443332222211000 02244778999999999999999999999775 11 234
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (519)
+..+|.++.+.|++++|+++|..+.+..+ + ..+...+|.+|.+.+++++ .+.| +. .+.
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~-----e----~~Idt~LafaYAKl~rlee-le~f---I~---------~~n 1194 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKAR-----E----SYVETELIFALAKTNRLAE-LEEF---IN---------GPN 1194 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcc-----c----ccccHHHHHHHHhhcCHHH-HHHH---Hh---------CCC
Confidence 78899999999999999999999877531 1 1112248999999999885 3333 11 122
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 010063 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (519)
. ..+..+|..+...|+|++|..+|.++ ..|..++.++.+.|++++|++.++++...
T Consensus 1195 ~-ad~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n~------- 1250 (1630)
T 1xi4_A 1195 N-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANST------- 1250 (1630)
T ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH-------
Confidence 2 45667999999999999999999986 25778999999999999999999987332
Q ss_pred CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
.+|...+.++...|++..|..+... +. .+++ .+..++..|...|.+++|+.++++++.+
T Consensus 1251 --------~aWkev~~acve~~Ef~LA~~cgl~-Ii--------v~~d---eLeeli~yYe~~G~feEAI~LlE~aL~L- 1309 (1630)
T 1xi4_A 1251 --------RTWKEVCFACVDGKEFRLAQMCGLH-IV--------VHAD---ELEELINYYQDRGYFEELITMLEAALGL- 1309 (1630)
T ss_pred --------HHHHHHHHHHhhhhHHHHHHHHHHh-hh--------cCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhcc-
Confidence 4667889999999999999887764 22 2333 3447888999999999999999999873
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063 446 TKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLY 517 (519)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~ 517 (519)
++.....+..+|.+|.+ -++..++.++|...+.+.+-+-.- ..+..|..+...|..-|+|
T Consensus 1310 -------eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~-----e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A 1310 -------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA-----EQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred -------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHH-----HHHHHHHHHHHHHHhcccH
Confidence 24445556667766654 466667777777665543211110 1123355666666666654
No 108
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.62 E-value=6.9e-15 Score=139.11 Aligned_cols=133 Identities=12% Similarity=0.075 Sum_probs=126.0
Q ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 010063 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (519)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (519)
...-+..+|++++|+..+++++++.++.++++|+.++.++.++|.+|..+|+|++|+.++++++++.++..|+++|.++.
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34446678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 341 (519)
.+++||.+|..+|++++|+.++++|+++.+..+|++||.+..++.+|+.+...
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887754
No 109
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.62 E-value=5.4e-16 Score=143.19 Aligned_cols=284 Identities=14% Similarity=0.054 Sum_probs=126.1
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (519)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (519)
-..|+.++|.+++++. +.+.+|..+|.++...|++++|++.|.++. + ...+..
T Consensus 14 ~~~~~ld~A~~fae~~---------------~~~~vWs~La~A~l~~g~~~eAIdsfika~-----------D-~~~y~~ 66 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC---------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-----------D-PSSYME 66 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC---------------CChHHHHHHHHHHHHcCCHHHHHHHHHcCC-----------C-HHHHHH
Confidence 3567788999888875 123589999999999999999999997631 1 114778
Q ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 010063 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (519)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (519)
++..+...|++++|+.+++.+.+.. +. ..+...++.+|.+.|++.++.++++. |. ..
T Consensus 67 V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~ 123 (449)
T 1b89_A 67 VVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING-------------PN-NA 123 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTTC-------------C----
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HH
Confidence 8889999999999999998877631 11 34566789999999999998877742 22 24
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (519)
++..+|..+...|+|++|..+|.++ ..+..+|.++.++|++++|++.++++..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~----------- 176 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANS----------- 176 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCC-----------
Confidence 8999999999999999999999976 2578899999999999999999999821
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (519)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (519)
..+|..+..++...|+++.|..+..... .+|+. ...+..+|.+.|++++|+.++++++.+
T Consensus 177 ----~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l---- 236 (449)
T 1b89_A 177 ----TRTWKEVCFACVDGKEFRLAQMCGLHIV---------VHADE---LEELINYYQDRGYFEELITMLEAALGL---- 236 (449)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHTTTTTT---------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred ----chhHHHHHHHHHHcCcHHHHHHHHHHHH---------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC----
Confidence 3456778899999999999966555311 35544 335888999999999999999999873
Q ss_pred cCCCCcchhHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhhcc
Q 010063 449 VGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 449 ~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lg~~k 518 (519)
+ +....++..||.+|.+ .++..++++.|...+.+.+-+-.-+.+ ..|..+.-+|..-|+|.
T Consensus 237 ---e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~-----~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 237 ---E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA-----HLWAELVFLYDKYEEYD 299 (449)
T ss_dssp ---T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTT-----TCHHHHHHHHHHTTCHH
T ss_pred ---c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHH-----HHHHHHHHHHHhhchHH
Confidence 2 4456667778877764 466777777776666555422111222 23667777777777653
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.56 E-value=9.1e-14 Score=108.06 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=103.3
Q ss_pred CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (519)
.-+|..+..+.++|..++..|++++|+..|++++++ +|....++.++|.++..+|++++|+..+++++++
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 76 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-- 76 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence 345889999999999999999999999999999986 2344678999999999999999999999999997
Q ss_pred HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 010063 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 338 (519)
+|....++.++|.++..+|++++|+..|++++++ +|....++..++.+
T Consensus 77 ------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 77 ------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNC 124 (126)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred ------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHh
Confidence 5667889999999999999999999999999996 45555667777654
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.56 E-value=1.4e-13 Score=107.01 Aligned_cols=116 Identities=13% Similarity=0.050 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
+|..+..+.++|..++..|++++|+..|++++++ .|....++.++|.++..+|++++|+..+++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence 5888999999999999999999999999999987 5667889999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 010063 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL 382 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~ 382 (519)
+|....++.++|.++..+|++++|+..|++++++ .|++.. ++..++.+
T Consensus 77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-------~P~~~~---a~~~l~~~ 124 (126)
T 4gco_A 77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV-------DPSNEE---AREGVRNC 124 (126)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHH---HHHHHHHH
T ss_pred ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CcCCHH---HHHHHHHh
Confidence 4566778999999999999999999999999998 444433 44556654
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.55 E-value=1.1e-12 Score=117.59 Aligned_cols=251 Identities=6% Similarity=-0.115 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhhhh
Q 010063 117 QLLELFNEVKSMIMMGNK-NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG--DLKFVQSLLDMMSGIVD 193 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~ 193 (519)
....+..........|.+ ++|+..+.+++.+ .|+...+++..+.++...| ++++++..++.++...
T Consensus 31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~----------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n- 99 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEEYSERALHITELGINE----------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN- 99 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-
Confidence 445566777777778887 5899999999999 9999999999999999999 9999999999998765
Q ss_pred hcCCCchHHHHHHHHHHHHH----Hcc---ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHH--HH
Q 010063 194 SLKDDEPLLDAILLHMGSMY----STL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK--KA 264 (519)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A 264 (519)
|....+++..+.++ ... +++++++.++.++++. +|....++...+.+....|.++ ++
T Consensus 100 ------Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~E 165 (306)
T 3dra_A 100 ------EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKE 165 (306)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHH
T ss_pred ------cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHH
Confidence 44445677777777 555 7899999999999875 3445778899999999999998 99
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 010063 265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338 (519)
Q Consensus 265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 338 (519)
++++.++++. ++....+++..+.+....|+ ++++++++.+++.. +|....+++.++.+
T Consensus 166 L~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~l 229 (306)
T 3dra_A 166 LSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGI 229 (306)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHH
Confidence 9999999986 67778899999999999887 99999999999985 56777789999999
Q ss_pred HHHCCCHHH-HHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063 339 KCANGNAEE-AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417 (519)
Q Consensus 339 ~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 417 (519)
+...|+..+ ...++.+++... ...+....++..++.++.+.|+.++|+++++.+.+. -+|.....
T Consensus 230 l~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-------~Dpir~~y 295 (306)
T 3dra_A 230 HERFDRSITQLEEFSLQFVDLE-------KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-------YNPIRSNF 295 (306)
T ss_dssp HHHTTCCGGGGHHHHHTTEEGG-------GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCGGGHHH
T ss_pred HHhcCCChHHHHHHHHHHHhcc-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-------cChHHHHH
Confidence 999998555 444555554431 011222446688999999999999999999997652 24555555
Q ss_pred HHHHH
Q 010063 418 LLNLA 422 (519)
Q Consensus 418 ~~~la 422 (519)
+...+
T Consensus 296 W~~~~ 300 (306)
T 3dra_A 296 WDYQI 300 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 113
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.55 E-value=6e-15 Score=136.24 Aligned_cols=273 Identities=12% Similarity=-0.007 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc
Q 010063 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (519)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (519)
.+...|..+...|++++|++.|.++ ..+..+..++..+...|++++|+.+++.+.+..
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika---------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~------- 91 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA---------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA------- 91 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC---------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------
Confidence 4667889999999999999999753 234477888889999999999999998877642
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
+. ..+...++.+|.+.|++.++..+++. ++ ..++..+|..+...|+|++|..+|.++
T Consensus 92 ~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~----------pn----~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 92 RE-SYVETELIFALAKTNRLAELEEFING----------PN----NAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp ------------------CHHHHTTTTTC----------C--------------------CTTTHHHHHHHT--------
T ss_pred cc-chhHHHHHHHHHHhCCHHHHHHHHcC----------Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 11 23467789999999999998877742 22 238999999999999999999999976
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
..+..+|.++..+|++++|++.++++. + ..+|..+..++...|+++.|..+....
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~~~~l~L---- 203 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQMCGLHI---- 203 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHHHTTTTT----
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHHHHHHHH----
Confidence 356789999999999999999999982 1 246788889999999999996655541
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh--ccCHHHHHHH
Q 010063 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVEAERL 437 (519)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~ 437 (519)
. .++.. ...++..|.+.|++++|+.++++++.+ .+.....+..+|.+|.+ .++..++++.
T Consensus 204 ------~-~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l--------e~ah~~~ftel~il~~ky~p~k~~ehl~~ 265 (449)
T 1b89_A 204 ------V-VHADE---LEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLEL 265 (449)
T ss_dssp ------T-TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS--------TTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------H-hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC--------cHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 1 12222 245889999999999999999999864 23335567777777764 4667777777
Q ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063 438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (519)
Q Consensus 438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (519)
|...+.+-+-+. .-.....|..+..+|...++++.|...+-+.
T Consensus 266 ~~~~ini~k~~~---~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 266 FWSRVNIPKVLR---AAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HSTTSCHHHHHH---HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhcCcHHHH---HHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 765554322100 0023345778899999999999998765443
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.54 E-value=1.8e-13 Score=123.47 Aligned_cols=169 Identities=15% Similarity=0.033 Sum_probs=144.1
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
|.....+..+|..+...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----- 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----- 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence 345677889999999999999999999999985 4666678999999999999999999999998765
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
.++. .......+..+...++.++|+..+++++.. .|....++.++|.++...|++++|+..|++++.
T Consensus 181 --~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 181 --DQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp --GCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2322 234466777788899999999999999885 466678899999999999999999999999998
Q ss_pred HHHHhcCCCCcch--hHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 444 IMTKTVGPDDQSI--SFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 444 ~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
. +|.. ..++.+++.++...|+.++|...|++++..
T Consensus 248 ~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 248 X--------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp H--------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred c--------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 4 3444 678899999999999999999999999864
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.54 E-value=3.6e-13 Score=115.55 Aligned_cols=177 Identities=16% Similarity=0.135 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 010063 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341 (519)
Q Consensus 262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 341 (519)
.+|+.+|+++.+. ..+.+++.+|.+|...+++++|+.+|+++.+. ....++.++|.+|..
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Confidence 3567788887753 23678999999999999999999999999873 234578899999998
Q ss_pred CC----CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhhCCCChh
Q 010063 342 NG----NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPS 413 (519)
Q Consensus 342 ~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (519)
+ ++++|+.+|+++.+. .+ ..++.+||.+|.. .+++++|+.+|+++.+.. ....
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~---------g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~ 123 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA---------GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDA 123 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT---------TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC---------CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcc
Confidence 7 999999999999653 12 3466899999998 889999999999987631 1114
Q ss_pred HHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc-C-----ChHHHHHHHHHH
Q 010063 414 FVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-N-----RDKEAEKLVLEA 483 (519)
Q Consensus 414 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a 483 (519)
...++.+||.+|.. .+++++|+.+|+++.+. +....++.+||.+|... | ++++|+.+|+++
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 57889999999999 88999999999999872 22234789999999864 3 899999999999
Q ss_pred HHH
Q 010063 484 LYI 486 (519)
Q Consensus 484 ~~~ 486 (519)
.+.
T Consensus 195 ~~~ 197 (212)
T 3rjv_A 195 CLE 197 (212)
T ss_dssp HHH
T ss_pred HHc
Confidence 875
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.53 E-value=3.1e-13 Score=115.97 Aligned_cols=177 Identities=15% Similarity=0.112 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHH
Q 010063 135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS 214 (519)
Q Consensus 135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (519)
.+|+.+|+++.+. ..+.+++.+|.+|...+++++|+.+|+++.+.. ...+++.+|.+|.
T Consensus 3 ~eA~~~~~~aa~~------------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~ 61 (212)
T 3rjv_A 3 TEPGSQYQQQAEA------------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKI 61 (212)
T ss_dssp -CTTHHHHHHHHT------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHC------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHH
Confidence 3577777777653 346789999999999999999999999987531 2346889999999
Q ss_pred ccc----cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 010063 215 TLE----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADL 286 (519)
Q Consensus 215 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 286 (519)
. + ++++|+.+|+++.+. . ...+++++|.+|.. .+++++|+.+|+++.+.- .....
T Consensus 62 ~-~g~~~~~~~A~~~~~~A~~~-------g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~ 124 (212)
T 3rjv_A 62 R-NPQQADYPQARQLAEKAVEA-------G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAA 124 (212)
T ss_dssp S-STTSCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHH
T ss_pred c-CCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcch
Confidence 8 7 999999999999652 2 25678899999998 899999999999998641 11145
Q ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHH
Q 010063 287 VLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-G-----NAEEAVELYKKAL 356 (519)
Q Consensus 287 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al 356 (519)
..++++||.+|.. .+++++|+.+|+++.+. +....++.+||.+|... | ++++|+.+|+++.
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 7899999999999 88999999999999873 12233788999999864 3 8999999999998
Q ss_pred HH
Q 010063 357 RV 358 (519)
Q Consensus 357 ~~ 358 (519)
+.
T Consensus 196 ~~ 197 (212)
T 3rjv_A 196 LE 197 (212)
T ss_dssp HH
T ss_pred Hc
Confidence 86
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.52 E-value=3.3e-13 Score=121.74 Aligned_cols=165 Identities=12% Similarity=0.035 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC
Q 010063 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (519)
..++..+..+...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..++++....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------ 181 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQL----------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD------ 181 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHh----------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh------
Confidence 44778899999999999999999999998 78888999999999999999999999999876553
Q ss_pred chHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (519)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (519)
|.........+..+...++.++|+..+++++.. +|....++.++|.++...|++++|+..|+++++.
T Consensus 182 -p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---- 248 (287)
T 3qou_A 182 -QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX---- 248 (287)
T ss_dssp -CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred -cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----
Confidence 223344566777788899999999999999886 2444678899999999999999999999999987
Q ss_pred cCCCChhh--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 279 RGTESADL--VLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 279 ~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
+|.. ..++.+++.++...|+.++|...|++++..
T Consensus 249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 249 ----DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp ----CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ----ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 3444 788999999999999999999999999864
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.52 E-value=1.1e-13 Score=115.10 Aligned_cols=167 Identities=19% Similarity=0.068 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 010063 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366 (519)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 366 (519)
...+..+|..+...|++++|+..++++++. +|....++..+|.++...|++++|+..+++++.. .
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-------~ 70 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-------Y 70 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-------G
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-------c
Confidence 345678899999999999999999999985 3666778999999999999999999999998765 2
Q ss_pred CCchHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063 367 LDDSIMENMRIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 367 ~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
| ++.. ...++.+. ...++..+|+..++++++. .|....++..+|.++...|++++|+..|++++..
T Consensus 71 p-~~~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 137 (176)
T 2r5s_A 71 Q-DNSY---KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV- 137 (176)
T ss_dssp C-CHHH---HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred C-ChHH---HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-
Confidence 3 3322 22233332 2334555689999998874 4555678999999999999999999999999873
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
.|+ +....++..++.++..+|+.++|...|++++..
T Consensus 138 ----~p~-~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 138 ----NLG-AQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp ----CTT-TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred ----Ccc-cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 121 122457889999999999999999999999864
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.51 E-value=1.3e-13 Score=114.71 Aligned_cols=162 Identities=11% Similarity=0.090 Sum_probs=131.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
++..+..+...|++++|+..++++++. .|..+.++..+|.++...|++++|+..+++++... + ++
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p-~~ 73 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE----------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY----Q-DN 73 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH----------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----C-CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----C-Ch
Confidence 667888999999999999999999988 78888999999999999999999999999876553 2 33
Q ss_pred HHHHHHHHHHHHH-HccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 201 LLDAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 201 ~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
.. ...++.+. ...++..+|+..++++++. +|....++..+|.++...|++++|+..|+++++.
T Consensus 74 ~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----- 137 (176)
T 2r5s_A 74 SY---KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV----- 137 (176)
T ss_dssp HH---HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----
T ss_pred HH---HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----
Confidence 32 22333332 2334455689999999876 2334678899999999999999999999999876
Q ss_pred CCCChh--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 280 GTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 280 ~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
.|. ...++..+|.++...|+.++|+..|++++..
T Consensus 138 ---~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 138 ---NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp ---CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred ---CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 332 3568899999999999999999999998864
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.51 E-value=1.1e-12 Score=114.54 Aligned_cols=211 Identities=14% Similarity=0.009 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH-------HHHHHhcCChHHHHHHHHH
Q 010063 115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII-------ALGYVYIGDLKFVQSLLDM 187 (519)
Q Consensus 115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~ 187 (519)
.+.+..++..+.-+ ..+++..|.+.|.++++. .|..+++|..+ +.++...++..+++..+.+
T Consensus 4 ~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~----------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~ 72 (282)
T 4f3v_A 4 TDRLASLFESAVSM-LPMSEARSLDLFTEITNY----------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSG 72 (282)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHH
T ss_pred hHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHh----------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHH
Confidence 34556677777666 689999999999999999 99999999999 8899999999999888888
Q ss_pred HHhhhhhcCCCc--------------hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010063 188 MSGIVDSLKDDE--------------PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253 (519)
Q Consensus 188 ~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 253 (519)
.+.+....-... .....+...++.++...|++++|...|...+. ..|... ..+.+|.
T Consensus 73 ~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~ 143 (282)
T 4f3v_A 73 SVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAV 143 (282)
T ss_dssp TTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHH
T ss_pred HhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHH
Confidence 777432210000 01234566788999999999999999987654 234445 8889999
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHH
Q 010063 254 VLGSIGRAKKAVEIYHRVITILELNRGTESAD-LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMA 331 (519)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~ 331 (519)
++...+++++|+.+++++... .++. ...+++++|.++..+|++++|+.+|++++. ++..|. ...+
T Consensus 144 l~~~~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da 210 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAI 210 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHH
T ss_pred HHHHcCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHH
Confidence 999999999999999866432 1232 245889999999999999999999999974 233254 6678
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 332 MCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
..++|.++..+|+.++|...|++++..
T Consensus 211 ~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 211 AWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999987
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.51 E-value=1e-13 Score=120.98 Aligned_cols=207 Identities=12% Similarity=-0.018 Sum_probs=163.7
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-------HHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM-------AKVLGSIGRAKKAVEIYHRVITILELN 278 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (519)
++..|..+ ..+++..|...|.+++.+ +|..+.++..+ +.++...++..+++..+++++.+....
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~ 80 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMST 80 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGG
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 55566665 689999999999999987 46668889888 888999999999999999888764333
Q ss_pred cCCCCh-------------hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 010063 279 RGTESA-------------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 345 (519)
Q Consensus 279 ~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 345 (519)
.+.... ........++.++...|++++|.+.|...+. ..|... ..+.+|.++...|++
T Consensus 81 l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~l~~~~~r~ 151 (282)
T 4f3v_A 81 LNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAVVYGAAERW 151 (282)
T ss_dssp GCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHHHHHHTTCH
T ss_pred hhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHHHHHHcCCH
Confidence 221111 1134556688999999999999999988765 346666 889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHH
Q 010063 346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAAS 424 (519)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~ 424 (519)
++|+.+++++... +++.....+++++|.++...|++++|+..|++++. ++..|. ...+.+.+|.+
T Consensus 152 ~dA~~~l~~a~~~--------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~gla 217 (282)
T 4f3v_A 152 TDVIDQVKSAGKW--------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMA 217 (282)
T ss_dssp HHHHHHHTTGGGC--------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc--------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHH
Confidence 9999999865432 22222345789999999999999999999999873 222244 67789999999
Q ss_pred HHhccCHHHHHHHHHHHHHH
Q 010063 425 YSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~ 444 (519)
+..+|+.++|...|++++..
T Consensus 218 L~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 218 RRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999984
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.50 E-value=9e-12 Score=111.60 Aligned_cols=239 Identities=9% Similarity=-0.047 Sum_probs=188.2
Q ss_pred HhcCCh-HHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010063 173 VYIGDL-KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE--NYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249 (519)
Q Consensus 173 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 249 (519)
...|.+ ++|+..+.+++.+. |....+++..+.++...| ++++++.++.+++.. +|....+++
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~ 107 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWN 107 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHH
Confidence 344554 68999999999886 666778999999999999 999999999999876 244456677
Q ss_pred HHHHHH----hhc---CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHh
Q 010063 250 GMAKVL----GSI---GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--DAESVFSRILKIYTKV 320 (519)
Q Consensus 250 ~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~ 320 (519)
..+.++ ... +++++++..+.++++. +|....+++..+.+....|.++ +++.++.++++.
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---- 175 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---- 175 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----
Confidence 777777 666 7899999999999987 6777899999999999999998 999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHH-HH
Q 010063 321 YGENDGRVGMAMCSLAHAKCANGN------AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE-GR 393 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~ 393 (519)
+|....++...+.+....|+ ++++++++++++.. .+.+ ..+++.++.++...|+..+ ..
T Consensus 176 ----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-------~p~n---~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 176 ----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK-------CPQN---PSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp ----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH-------CSSC---HHHHHHHHHHHHHTTCCGGGGH
T ss_pred ----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh-------CCCC---ccHHHHHHHHHHhcCCChHHHH
Confidence 56767799999999999887 99999999999987 3333 4566889999999998655 44
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 010063 394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464 (519)
Q Consensus 394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 464 (519)
.++++++.+. ...+....++..++.+|.+.|+.++|+++|+.+.+ .-+|.....+...+
T Consensus 242 ~~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~-------~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 242 EFSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS-------KYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTCGGGHHHHHHHH
T ss_pred HHHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-------ccChHHHHHHHHHH
Confidence 4555554421 11344556888999999999999999999999775 22455555444433
No 123
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.50 E-value=1.4e-12 Score=101.48 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
++.+.++.++|..+...|++++|+.+|++++++ +|....++.++|.+|..+|++++|+..+++++++.+..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 455778899999999999999999999999986 46667789999999999999999999999999997763
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
.......+.++.++|.++...|++++|++.|++++..
T Consensus 76 --~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 --RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp --TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556677889999999999999999999999999875
No 124
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.50 E-value=1.6e-12 Score=101.17 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
++.+.++.++|..++..|++++|+.+|++++++ .|....++.++|.+|..+|++++|+..+++++++....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 455778899999999999999999999999997 56678899999999999999999999999999987654
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
....+..+.++.++|.++...|++++|+++|++++..
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2234557789999999999999999999999999986
No 125
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.49 E-value=4.1e-13 Score=134.00 Aligned_cols=153 Identities=11% Similarity=0.022 Sum_probs=120.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHH
Q 010063 131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG 210 (519)
Q Consensus 131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 210 (519)
.|++++|+..++++++. .|..+.++..+|.++...|++++|+..++++++.. |....++..+|
T Consensus 2 ~g~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg 64 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH----------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------PGHPEAVARLG 64 (568)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------TTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHH
Confidence 47899999999999887 67778899999999999999999999999998764 44456789999
Q ss_pred HHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 010063 211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL 290 (519)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 290 (519)
.++...|++++|+.+++++++.. |....++.++|.++...|++++|+..++++++. .|....++
T Consensus 65 ~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~ 128 (568)
T 2vsy_A 65 RVRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYIT 128 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 99999999999999999999862 333678899999999999999999999999987 45567889
Q ss_pred HHHHHHHHhC---CCHHHHHHHHHHHHHH
Q 010063 291 FSLGSLFIKE---GKAVDAESVFSRILKI 316 (519)
Q Consensus 291 ~~la~~~~~~---g~~~~A~~~~~~al~~ 316 (519)
.++|.++... |++++|...++++++.
T Consensus 129 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999999999 9999999999999986
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.48 E-value=1.9e-12 Score=103.60 Aligned_cols=102 Identities=9% Similarity=0.069 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
+|....+++.+|.++...|++++|+..|++++.+ .|....++.++|.++...|++++|+..|++++.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 5778889999999999999999999999999997 6777889999999999999999999999999997
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
.|....++.++|.+|...|++++|+..|++++++
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555568999999999999999999999999998
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.48 E-value=8.8e-13 Score=131.57 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=118.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010063 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 337 (519)
Q Consensus 258 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 337 (519)
.|++++|+..++++++. .|....++..+|.++...|++++|+..+++++++ .|....++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 47899999999999876 4566789999999999999999999999999984 4566778999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHH
Q 010063 338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417 (519)
Q Consensus 338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 417 (519)
++...|++++|+.+++++++. .++. ..++.++|.++...|++++|++.+++++++ .|....+
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~-------~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 127 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDA-------APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYI 127 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 999999999999999999987 2333 456789999999999999999999999986 3444578
Q ss_pred HHHHHHHHHhc---cCHHHHHHHHHHHHHH
Q 010063 418 LLNLAASYSRS---KNFVEAERLLRICLDI 444 (519)
Q Consensus 418 ~~~la~~~~~~---g~~~~A~~~~~~al~~ 444 (519)
+.++|.++... |++++|...++++++.
T Consensus 128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 89999999999 9999999999999984
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.45 E-value=4e-12 Score=101.68 Aligned_cols=104 Identities=11% Similarity=0.182 Sum_probs=94.4
Q ss_pred CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 010063 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (519)
.-+|....+++.+|.++...|++++|+..|++++.+ +|....++.++|.++...|++++|+..|++++++
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-- 99 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-- 99 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence 445888888999999999999999999999999987 2444678999999999999999999999999998
Q ss_pred HhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
.|....+++++|.+|..+|++++|+..|++++++
T Consensus 100 ------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 ------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp ------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666789999999999999999999999999997
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.44 E-value=4.6e-13 Score=123.60 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=133.5
Q ss_pred hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC-------CCHHHHH
Q 010063 174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-------TSILLVT 246 (519)
Q Consensus 174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~ 246 (519)
.++++++|+..++++.... |..+.++..+|.++...|++++|+..|++++.+....... ..+....
T Consensus 125 ~L~~~~~A~~~~~~a~~~~-------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEK-------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEEECCCCGGGCCHHHH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHH-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 4566777776666655433 7777889999999999999999999999999875321000 0123467
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (519)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (519)
++.++|.+|...|++++|+..+++++++ .|....+++++|.+|...|++++|+..|++++++ .|
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 261 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP 261 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence 8999999999999999999999999997 5667889999999999999999999999999986 35
Q ss_pred hHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHH
Q 010063 327 RVGMAMCSLAHAKCANGNAEEA-VELYKKALRVIK 360 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~ 360 (519)
....++.+++.++...|++++| ...|.+++....
T Consensus 262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566889999999999999999 557777766544
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.44 E-value=3.2e-13 Score=124.70 Aligned_cols=161 Identities=10% Similarity=0.077 Sum_probs=134.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC--------CchHH
Q 010063 131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD--------DEPLL 202 (519)
Q Consensus 131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~ 202 (519)
.+++++|+..++++++. .+..+.++..+|.++...|++++|+..|++++.+...... ..+..
T Consensus 126 L~~~~~A~~~~~~a~~~----------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~ 195 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE----------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 195 (336)
T ss_dssp EEEEECCCCGGGCCHHH----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence 45677788888777766 6778899999999999999999999999999988633210 01333
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
..++.++|.++...|++++|+..+++++++. |....+++++|.+|...|++++|+..|++++++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------- 259 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-------- 259 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence 5779999999999999999999999999872 334678999999999999999999999999998
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHH
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDA-ESVFSRILKIY 317 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 317 (519)
.|....++..++.++...|++++| ...|++++...
T Consensus 260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678999999999999999999 45777776654
No 131
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.40 E-value=1.9e-11 Score=96.21 Aligned_cols=130 Identities=22% Similarity=0.413 Sum_probs=112.1
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (519)
+++.+|.++...|++++|+.++++++... |....++..+|.++...|++++|..++++++.. .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CC
Confidence 57889999999999999999999998752 222567788999999999999999999999876 34
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|..++++++..
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 45678889999999999999999999999885 2334557888999999999999999999999876
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.40 E-value=4.3e-12 Score=101.70 Aligned_cols=103 Identities=17% Similarity=-0.001 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
+|....+++.+|.++...|++++|+..|++++.. .|....++.++|.++...|++++|+..|++++.+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 84 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---- 84 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4777888999999999999999999999999987 5667888999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
.|....++.++|.++...|++++|+..|++++++.
T Consensus 85 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 ----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp ----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34555678999999999999999999999999985
No 133
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.40 E-value=2.1e-11 Score=95.97 Aligned_cols=131 Identities=21% Similarity=0.355 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (519)
.++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|..++++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 35778899999999999999999999876 3445678889999999999999999999999875 2
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
|....++..+|.++...|++++|+.++++++.. .+.. ..++..+|.++...|++++|...+++++..
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 344557889999999999999999999999986 2333 345678999999999999999999998864
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.40 E-value=3.9e-11 Score=98.41 Aligned_cols=140 Identities=12% Similarity=0.042 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (519)
..+..+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 45677889999999999999999999999987 4556788999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
.|....++..+|.++...|++++|+.++++++.. .+.+... .....++..+...|++++|+..++++..+
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-------KPHDKDA-KMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCCHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 3455668899999999999999999999999987 3334332 23355666688999999999999998887
Q ss_pred HHHh
Q 010063 403 TEKY 406 (519)
Q Consensus 403 ~~~~ 406 (519)
....
T Consensus 147 ~~~~ 150 (166)
T 1a17_A 147 VDSL 150 (166)
T ss_dssp HHHC
T ss_pred hccc
Confidence 6553
No 135
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.40 E-value=2.9e-10 Score=102.33 Aligned_cols=235 Identities=9% Similarity=-0.006 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHHcCChh-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCC----------hHHHHHHH
Q 010063 117 QLLELFNEVKSMIMMGNKN-DAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD----------LKFVQSLL 185 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~ 185 (519)
....+...+......|+++ +|+.++.+++.. .|....+++..+.+....|. +++++.++
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~----------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~ 97 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFL 97 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT----------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 3444555666667888887 789999999988 88888999999998887765 56777777
Q ss_pred HHHHhhhhhcCCCchHHHHHHHHHHHHHHcccc--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCC-HH
Q 010063 186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN--YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-AK 262 (519)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~ 262 (519)
+.++... |....+|+..+.++...|+ +++++.++.++++. +|....++...+.+....|. ++
T Consensus 98 ~~~L~~~-------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~ 162 (331)
T 3dss_A 98 ESCLRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPA 162 (331)
T ss_dssp HHHHHHC-------TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhC-------CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHH
Confidence 7776553 5556678899999988884 89999999999886 34447788889999999998 69
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010063 263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--------------GKAVDAESVFSRILKIYTKVYGENDGRV 328 (519)
Q Consensus 263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (519)
++++++.++++. +|....+++..+.++... +.++++++++.+++.+ +|..
T Consensus 163 eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d 226 (331)
T 3dss_A 163 EELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPND 226 (331)
T ss_dssp HHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTC
T ss_pred HHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCC
Confidence 999999999986 677788999999888876 4588999999999985 4666
Q ss_pred HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH---HHcCChHHHHH
Q 010063 329 GMAMCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL---HIVGRGQEGRE 394 (519)
Q Consensus 329 ~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~ 394 (519)
..+++.+..++... +.++++++.++++++. .|+... ++..++.+. ...|..++...
T Consensus 227 ~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~-------~pd~~w---~l~~~~~~~~~~~~~~~~~~~~~ 296 (331)
T 3dss_A 227 QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL-------EPENKW---CLLTIILLMRALDPLLYEKETLQ 296 (331)
T ss_dssp HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-------CTTCHH---HHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-------Ccccch---HHHHHHHHHHhhcccccHHHHHH
Confidence 66776665555554 3577888888888877 455433 223333322 23567778888
Q ss_pred HHHHHHHH
Q 010063 395 LLEECLLI 402 (519)
Q Consensus 395 ~~~~al~~ 402 (519)
++.+.+++
T Consensus 297 ~l~~l~~~ 304 (331)
T 3dss_A 297 YFSTLKAV 304 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887765
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.37 E-value=4.4e-12 Score=101.68 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
.|....+++.+|.++...|++++|+..|++++... |....+++.+|.++...|++++|+..|++++.+.
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---- 85 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---- 85 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----
Confidence 78899999999999999999999999999998775 4445568999999999999999999999999872
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (519)
|....+++++|.++...|++++|+..|++++++.
T Consensus 86 ----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 ----IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp ----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2335678899999999999999999999999884
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.36 E-value=3.8e-11 Score=98.47 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
..+..+..+|..+...|++++|+..+++++... |....++..+|.++...|++++|+.+++++++.
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 345668999999999999999999999999862 223678889999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
.|....++..+|.++...|++++|+.++++++++. +.++. ......++..+...|++++|+..+.++..+..
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 45567889999999999999999999999999862 22222 22345566668889999999999999988876
Q ss_pred h
Q 010063 361 D 361 (519)
Q Consensus 361 ~ 361 (519)
.
T Consensus 149 ~ 149 (166)
T 1a17_A 149 S 149 (166)
T ss_dssp H
T ss_pred c
Confidence 5
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=5.4e-11 Score=92.55 Aligned_cols=122 Identities=12% Similarity=0.032 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
..+..+..+|..+...|++++|+..|++++... |....++.++|.++...|++++|+..+++++++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 345568999999999999999999999999862 333678999999999999999999999999997
Q ss_pred CCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 010063 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC 340 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 340 (519)
.|....++..+|.++...|++++|+..+++++++..... ..|....+...++.+..
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQ 123 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHH
Confidence 566688999999999999999999999999999864432 23555556666665543
No 139
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.35 E-value=4.1e-11 Score=94.37 Aligned_cols=117 Identities=18% Similarity=0.098 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT----ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
+..+.+.|..+...|+|++|+..|++++++....... ..|....+|.++|.++..+|++++|+..++++++++.+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 5667889999999999999999999999986441110 012234599999999999999999999999999986655
Q ss_pred cCCCChhHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 321 YGENDGRVGMAM----CSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 321 ~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
++-+|+...+| +++|.++..+|++++|+..|++++++..+.
T Consensus 91 -~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 -GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp -CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred -ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 34567888888 999999999999999999999999997763
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.35 E-value=4.3e-11 Score=93.08 Aligned_cols=102 Identities=15% Similarity=-0.019 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC
Q 010063 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (519)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (519)
.+..+..+|..+...|++++|+..|++++++ .|....++.++|.++...|++++|+..+++++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------- 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 4667889999999999999999999999987 4666789999999999999999999999999986
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
+|....++.++|.++...|++++|+..+++++++...
T Consensus 68 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 68 -DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence 4555678999999999999999999999999998644
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.34 E-value=2.8e-12 Score=115.17 Aligned_cols=194 Identities=12% Similarity=0.009 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
+..+..+|..+...|++++|+..|+++++. .|....++.++|.+|...|++++|+..+++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 567888999999999999999999999987 5566889999999999999999999999999874
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (519)
+|....++.++|.++...|++++|+..+++++++...... .-.... .. ..... ++...... .
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~-~~----~~~~~------~~~~~~~~-----~ 129 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDI-PS----ALRIA------KKKRWNSI-----E 129 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHH-HH----HHHHH------HHHHHHHH-----H
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh--hHHHHH-HH----HHHHH------HHHHHHHH-----H
Confidence 5666778999999999999999999999999998765310 001111 11 11111 11111111 1
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc-CChHHHHHHHHHH
Q 010063 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEA 483 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 483 (519)
....+..+.. ...++.++ .|++++|++.++++++. .|........++.++... +.+++|...|.++
T Consensus 130 ~~~~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 130 ERRIHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HTCCCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111233333 33344443 68999999999988872 344444555666666655 6788888888877
Q ss_pred HH
Q 010063 484 LY 485 (519)
Q Consensus 484 ~~ 485 (519)
.+
T Consensus 197 ~~ 198 (281)
T 2c2l_A 197 DE 198 (281)
T ss_dssp SC
T ss_pred hc
Confidence 65
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.34 E-value=3.3e-11 Score=94.93 Aligned_cols=116 Identities=16% Similarity=0.070 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhC----CCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (519)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (519)
+..+.++|..+...|++++|+..|++++.+...... ...|....+|.++|.++..+|++++|+..++++++++.+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 455688999999999999999999999998754110 0112345599999999999999999999999999986665
Q ss_pred cCCCCcchhHHH----HHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010063 449 VGPDDQSISFPM----LHLGITLYHLNRDKEAEKLVLEALYIREI 489 (519)
Q Consensus 449 ~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 489 (519)
++-+|+...++ +++|.++..+|++++|+..|++++++...
T Consensus 91 -~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 -GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp -CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 35568888888 99999999999999999999999999854
No 143
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=2.4e-11 Score=104.32 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
...++.+|..+...|++++|+..|++++. + ...++.++|.++...|++++|+.++++++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 45577899999999999999999998841 1 3578999999999999999999999999986
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc------CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (519)
.|....++.++|.++...|++++|+..++++++....... .....+....++.++|.++...|++++|+..+++
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3555678999999999999999999999999987432100 0002334457789999999999999999999999
Q ss_pred HHHH
Q 010063 399 CLLI 402 (519)
Q Consensus 399 al~~ 402 (519)
++.+
T Consensus 147 al~~ 150 (213)
T 1hh8_A 147 ATSM 150 (213)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 9875
No 144
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.32 E-value=4.3e-11 Score=102.77 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (519)
..++.+|..+...|++++|+..|++++. + ...++.++|.++...|++++|+..+++++++ .
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 67 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D 67 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 3478899999999999999999998841 1 2468899999999999999999999999987 4
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010063 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--------GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (519)
|....++.++|.++...|++++|+..++++++...... ....|....++.++|.++...|++++|+..++++
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56678999999999999999999999999998642210 0023456688999999999999999999999999
Q ss_pred HHH
Q 010063 356 LRV 358 (519)
Q Consensus 356 l~~ 358 (519)
++.
T Consensus 148 l~~ 150 (213)
T 1hh8_A 148 TSM 150 (213)
T ss_dssp HTT
T ss_pred HHc
Confidence 886
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.32 E-value=3.3e-12 Score=108.42 Aligned_cols=166 Identities=12% Similarity=-0.001 Sum_probs=115.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCc
Q 010063 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369 (519)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (519)
....+......|++++|.+.+...... .+..+..+..+|..+...|++++|+.+|++++...... ++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~ 74 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT----EEW 74 (198)
T ss_dssp ---------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC----TTC
T ss_pred ccchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----ccc
Confidence 344566667778888888877765542 24566788999999999999999999999999874321 111
Q ss_pred h----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010063 370 S----------IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (519)
Q Consensus 370 ~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (519)
. ....++.++|.++...|++++|+.++++++.+ .|....++..+|.+|...|++++|+.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0 11367899999999999999999999999986 34456789999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHH-HHHHHH
Q 010063 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE-KLVLEA 483 (519)
Q Consensus 440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a 483 (519)
+++.+ .|....++..++.++...++..++. ..+.+.
T Consensus 147 ~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 147 KAASL--------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHH--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 3455677888999999888887776 334433
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.31 E-value=4.4e-12 Score=107.62 Aligned_cols=161 Identities=12% Similarity=0.050 Sum_probs=114.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC-----
Q 010063 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT----- 240 (519)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----- 240 (519)
...+......|+++++.+.++..... .+..+..+..+|..+...|++++|+..|++++.+........
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEE-------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL 80 (198)
T ss_dssp --------------CCCSGGGCCHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHH-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 34455666778888877766543322 255666788999999999999999999999988643210000
Q ss_pred ---CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 241 ---SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 241 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
......++.++|.++...|++++|+.++++++++ .|....++..+|.++...|++++|+..|++++++
T Consensus 81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~- 151 (198)
T 2fbn_A 81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL- 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-
Confidence 0012478899999999999999999999999987 4566789999999999999999999999999986
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 010063 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349 (519)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 349 (519)
.|....++..++.++...++.+++.
T Consensus 152 -------~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 152 -------NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567888899888888777766
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.30 E-value=6.7e-11 Score=92.85 Aligned_cols=125 Identities=9% Similarity=0.085 Sum_probs=106.6
Q ss_pred CCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Q 010063 155 GNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (519)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (519)
....+.....+..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+.++++++...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~- 80 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE- 80 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 34567888999999999999999999999999998764 3335568999999999999999999999999862
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC
Q 010063 235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 302 (519)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 302 (519)
|....++..+|.++...|++++|+.+++++++. .|....++..++.++...|+
T Consensus 81 -------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 -------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred -------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 223567889999999999999999999999987 45567788899999887764
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.28 E-value=1.8e-10 Score=89.89 Aligned_cols=124 Identities=19% Similarity=0.165 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
.+.....+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 75 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc----
Confidence 4566788999999999999999999999999987 3455788999999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChH
Q 010063 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 390 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 390 (519)
.|....++..+|.++...|++++|+.++++++.. .++. ..++..++.++...|+++
T Consensus 76 ----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~---~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 76 ----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL-------DPDN---ETYKSNLKIAELKLREAP 131 (131)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHHHHTTCC
T ss_pred ----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------Cccc---hHHHHHHHHHHHHHhcCC
Confidence 3444568899999999999999999999999987 2333 345688999999888763
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.28 E-value=8.5e-11 Score=92.22 Aligned_cols=123 Identities=12% Similarity=-0.020 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 010063 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (519)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (519)
..+....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--- 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 34567888999999999999999999999999875 4555788999999999999999999999999985
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCC
Q 010063 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 388 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (519)
.|....++..+|.++...|++++|+.++++++... +.. ..++..++.++..+|+
T Consensus 80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------p~~---~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-------SSC---KEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------GGG---THHHHHHHHHHHHHTC
T ss_pred -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------CCc---hHHHHHHHHHHHHhcC
Confidence 34556688999999999999999999999999872 222 3456788888887764
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.28 E-value=2.4e-10 Score=93.45 Aligned_cols=104 Identities=17% Similarity=0.117 Sum_probs=92.4
Q ss_pred CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
+.+.....+..+|.++...|++++|+..|++++.+ .|....++.++|.+|...|++++|+.+|++++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 34455678899999999999999999999999986 3445678999999999999999999999999985
Q ss_pred hcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
+|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 35567889999999999999999999999999976
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.27 E-value=2.6e-10 Score=90.74 Aligned_cols=104 Identities=14% Similarity=0.019 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
+|.....++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4677888999999999999999999999999987 5667889999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
.|....++.++|.++...|++++|+..|++++++..
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345556789999999999999999999999999864
No 152
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.27 E-value=2.8e-12 Score=124.13 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
+..+..+..+|.++...|++++|+..|++++++ .|....++.++|.+|..+|++++|+..+++++++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----- 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 344566778899999999999999999999997 5667899999999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH--HHHcCChHHHHHHHH--
Q 010063 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL--LHIVGRGQEGRELLE-- 397 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-- 397 (519)
+|....++.++|.+|..+|++++|+..+++++++ .++... ++..++.+ +..+|++++|++.++
T Consensus 70 ---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~~---~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 70 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-------KPHDKD---AKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTCTT---HHHHHHHHHHHHHHHHHCCC------C
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHH---HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 5666778999999999999999999999999987 233332 34566666 888999999999999
Q ss_pred ---------HHHHHHHHhhCCCChh---HHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHHh
Q 010063 398 ---------ECLLITEKYKGKEHPS---FVTHLLNLAASYSRSKNF--VEAERLLRICLDIMTKT 448 (519)
Q Consensus 398 ---------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~ 448 (519)
+++.+.....++..+. ....+..+...+...+.. ..+..++.++.++..+.
T Consensus 137 ~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e 201 (477)
T 1wao_1 137 RSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL 201 (477)
T ss_dssp CSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred chhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence 5555443333333332 223344455555555543 45556788887777653
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.27 E-value=1.2e-10 Score=95.11 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYH 269 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 269 (519)
...+..+...|..++..|++++|+..|.+++.+...... +. .|....++.++|.+|...|++++|+..++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345667899999999999999999999999998654321 11 35567889999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 270 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
+++++ .|....+++.+|.++...|++++|+..|++++.+
T Consensus 88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 99998 5677899999999999999999999999999997
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.26 E-value=1.4e-10 Score=90.61 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=105.7
Q ss_pred CchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (519)
..+.....+..+|..+...|++++|+..+++++... |....++..+|.++...|++++|+..++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 446667789999999999999999999999998862 223667889999999999999999999999986
Q ss_pred hcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 010063 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 345 (519)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 345 (519)
.|....++..+|.++...|++++|+.++++++.. .|....++..++.++...|++
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 3455788999999999999999999999999986 344456788899999888764
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.26 E-value=1.1e-11 Score=111.19 Aligned_cols=194 Identities=13% Similarity=0.042 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
+..+..+|..+...|++++|+..|++++... |....++.++|.+|...|++++|+..+++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 3458899999999999999999999999862 333678899999999999999999999999875
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
.|....+++++|.++...|++++|+..|++++++.......-. ...... + . ..++...... ...
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~~~~~--~--~------~~~~~~~~~~----~~~- 131 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSA--L--R------IAKKKRWNSI----EER- 131 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC-SHHHHH--H--H------HHHHHHHHHH----HHT-
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH-HHHHHH--H--H------HHHHHHHHHH----HHH-
Confidence 5667889999999999999999999999999998654311101 111111 1 1 1111111111 111
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc-cCHHHHHHHHHHH
Q 010063 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLRIC 441 (519)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 441 (519)
..+..+.+. ..++.++ .|++++|++.++++++. .|........++.++... +.+++|..+|.++
T Consensus 132 --~~~~~~~i~---~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 132 --RIHQESELH---SYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp --CCCCCCHHH---HHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred --HHhhhHHHH---HHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 123333333 3344433 68899999988887763 344445555666666665 6788899999887
Q ss_pred HH
Q 010063 442 LD 443 (519)
Q Consensus 442 l~ 443 (519)
.+
T Consensus 197 ~~ 198 (281)
T 2c2l_A 197 DE 198 (281)
T ss_dssp SC
T ss_pred hc
Confidence 65
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.26 E-value=1.8e-10 Score=94.28 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Q 010063 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (519)
.+..+..+..+|.++...|++++|+.+|++++++ .|....++.++|.+|...|++++|+..+++++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---- 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 4566888999999999999999999999999997 4666889999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
+|....++.++|.++...|++++|+.+|++++++.
T Consensus 75 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 ----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45567789999999999999999999999999985
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.26 E-value=7.5e-12 Score=120.65 Aligned_cols=153 Identities=12% Similarity=0.106 Sum_probs=125.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC--------CchHH
Q 010063 131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD--------DEPLL 202 (519)
Q Consensus 131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~ 202 (519)
.+++++|+..++.+++. .+..+..+..+|..++..|+|++|+..|++++.+...... ..+..
T Consensus 247 l~~~~~A~~~~~~~~~~----------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~ 316 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKE----------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL 316 (457)
T ss_dssp EEEEECCCCGGGSCHHH----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHH----------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence 44567788777777766 6778889999999999999999999999999988633110 02234
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
..++.++|.+|...|++++|+..+++++.+. |....+++++|.+|..+|++++|+..|++++++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-------- 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-------- 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 6779999999999999999999999999872 334778999999999999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHH
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESV 309 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~ 309 (519)
.|....++..++.++...+++++|...
T Consensus 381 ~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 381 NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667899999999999999888753
No 158
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.26 E-value=2.5e-12 Score=124.44 Aligned_cols=179 Identities=11% Similarity=-0.000 Sum_probs=130.2
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (519)
..+..+..+|..+...|++++|+.+|++++++ +|....++.++|.++..+|++++|+..+++++++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------ 69 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 69 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 34556677888999999999999999999986 4666789999999999999999999999999986
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH--HHhccCHHHHHHHHH---
Q 010063 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS--YSRSKNFVEAERLLR--- 439 (519)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~--- 439 (519)
.++. ..++.++|.+|..+|++++|++.+++++++. |....++..++.+ +..+|++++|++.++
T Consensus 70 -~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~ 137 (477)
T 1wao_1 70 -DKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 137 (477)
T ss_dssp -CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred -CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3333 4567899999999999999999999999862 2223456667777 888999999999999
Q ss_pred --------HHHHHHHHhcCCCCcc---hhHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHH
Q 010063 440 --------ICLDIMTKTVGPDDQS---ISFPMLHLGITLYHLNRDK--EAEKLVLEALYIREI 489 (519)
Q Consensus 440 --------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~ 489 (519)
+++.+.....++..+. ....+..+...+...+... .+...+.++.++..+
T Consensus 138 ~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 138 SVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp STTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred hhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 5555433333333333 2333444555555555544 455578888877764
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.25 E-value=1.6e-11 Score=118.33 Aligned_cols=160 Identities=16% Similarity=0.249 Sum_probs=125.4
Q ss_pred hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC-------CCHHHHH
Q 010063 174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-------TSILLVT 246 (519)
Q Consensus 174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~ 246 (519)
..+++++|+..++.+.... |..+..+..+|..++..|++++|+..|++++.+....... ..+....
T Consensus 246 ~l~~~~~A~~~~~~~~~~~-------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEK-------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEEECCCCGGGSCHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHH-------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 3455666666665544433 6777889999999999999999999999999975331000 0123468
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (519)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (519)
++.++|.+|..+|++++|+..+++++++ .|....+++++|.+|..+|++++|+..|++++++ .|
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NP 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Confidence 8999999999999999999999999997 5667899999999999999999999999999985 46
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Q 010063 327 RVGMAMCSLAHAKCANGNAEEAVE-LYKKAL 356 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 356 (519)
....++..++.++...|++++|.. .+.+++
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666789999999999999988764 344433
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.25 E-value=2e-10 Score=91.34 Aligned_cols=103 Identities=12% Similarity=-0.013 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Q 010063 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (519)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (519)
.+.....+..+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3444567789999999999999999999999874 4555678899999999999999999999999985
Q ss_pred cCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.|....++..+|.+|...|++++|+.+|++++++.
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34555678999999999999999999999999987
No 161
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.25 E-value=5.4e-11 Score=98.82 Aligned_cols=122 Identities=13% Similarity=0.179 Sum_probs=101.5
Q ss_pred HHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010063 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292 (519)
Q Consensus 213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 292 (519)
+...|++++|+..+++++... |....++..+|.++...|++++|+.+|++++++. |....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 456789999999999998862 2335688899999999999999999999999873 445678899
Q ss_pred HHHH-HHhCCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 293 LGSL-FIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 293 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
+|.+ +...|++ ++|+.++++++.. .|....++..+|.++...|++++|+..++++++.
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999 8899999 9999999999986 3555668899999999999999999999999987
No 162
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.25 E-value=6.7e-11 Score=98.23 Aligned_cols=122 Identities=11% Similarity=0.119 Sum_probs=102.1
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHH
Q 010063 128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILL 207 (519)
Q Consensus 128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (519)
+...|++++|+..++++++. .|..+.++..+|.++...|++++|+..+++++... |....++.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~ 82 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA----------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYA 82 (177)
T ss_dssp CC-----CCCCHHHHHHHHH----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHH
Confidence 45688999999999999988 67778899999999999999999999999999876 22244688
Q ss_pred HHHHH-HHccccH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063 208 HMGSM-YSTLENY--EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 208 ~l~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (519)
.+|.+ +...|++ ++|+..+++++... |....++..+|.++...|++++|+..+++++++
T Consensus 83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 83 ALATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999 8899999 99999999999862 233567889999999999999999999999986
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.23 E-value=1.8e-08 Score=90.69 Aligned_cols=223 Identities=11% Similarity=-0.020 Sum_probs=164.1
Q ss_pred HhcCChH-HHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHcccc----------HHHHHHHHHHHHHHHHHhcCCCC
Q 010063 173 VYIGDLK-FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN----------YEKSMLVYQRVINVLESRYGKTS 241 (519)
Q Consensus 173 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 241 (519)
...|+++ +|+..+..++.+. |....+++..+.++...|. +++++.++..++.. +
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~ 104 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N 104 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------C
Confidence 4567776 7899998888765 6666678888888877665 56777777777764 3
Q ss_pred HHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Q 010063 242 ILLVTSLLGMAKVLGSIGR--AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYT 318 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 318 (519)
|....++...+.++...|+ +++++.++.++++. +|....+++..+.+....|. +++++.++.++++.
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-- 174 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 174 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--
Confidence 4457788899999999984 89999999999987 67778999999999999998 69999999999985
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 010063 319 KVYGENDGRVGMAMCSLAHAKCAN--------------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 384 (519)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~ 384 (519)
+|....+++..+.++... +.++++++++.+++.. .|++.. +++.+..++.
T Consensus 175 ------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-------~P~d~S---aW~Y~r~ll~ 238 (331)
T 3dss_A 175 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-------DPNDQS---AWFYHRWLLG 238 (331)
T ss_dssp ------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-------STTCHH---HHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-------CCCCHH---HHHHHHHHHH
Confidence 567777899999888876 5688999999999987 344433 3343444444
Q ss_pred Hc-----------CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH---HhccCHHHHHHHHHHHHHH
Q 010063 385 IV-----------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY---SRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 385 ~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~ 444 (519)
.. +.++++++.+++.+++. |+...++..++.+. ...|..++...++.+..++
T Consensus 239 ~~~~~~~~~~~~~~~l~~el~~~~elle~~--------pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 239 AGSGRCELSVEKSTVLQSELESCKELQELE--------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp SSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hccCccccchHHHHHHHHHHHHHHHHHhhC--------cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 33 34567777777776642 33334444444332 2457788888888888774
No 164
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=1.8e-09 Score=95.54 Aligned_cols=257 Identities=13% Similarity=0.072 Sum_probs=166.7
Q ss_pred HHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010063 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (519)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (519)
-.+..|+|..++.-.. ++ .+..+.. ....+.++|..+|++.... .+.|. ..+...
T Consensus 22 n~fy~G~yq~~i~e~~---~~----~~~~~~~--~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~ 76 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIE---KF----SKVTDNT--LLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL 76 (310)
T ss_dssp HHHTTTCHHHHTHHHH---TS----SCCCCHH--HHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred HHHHhhHHHHHHHHHH---hc----CccchHH--HHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence 3457899998887332 22 2333332 3556677788888876421 12232 223334
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (519)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (519)
++..+. ++ |+..+++.++. . +....++..+|.++...|++++|+.++.+.+.. + ..+....
T Consensus 77 la~~~~--~~---a~~~l~~l~~~-------~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~-~~~~~le 137 (310)
T 3mv2_B 77 YVQFLD--TK---NIEELENLLKD-------K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDN-----D-EAEGTTE 137 (310)
T ss_dssp HHHHHT--TT---CCHHHHHTTTT-------S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----S-CSTTHHH
T ss_pred HHHHhc--cc---HHHHHHHHHhc-------C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----C-CCcCcHH
Confidence 444442 22 56666655432 1 122344568999999999999999999998652 1 1136777
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC---chHHHHHHHHHH--HHHHHcC--ChHHHHHHHHHHHHHH
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD---DSIMENMRIDLA--ELLHIVG--RGQEGRELLEECLLIT 403 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~~~la--~~~~~~g--~~~~A~~~~~~al~~~ 403 (519)
++..++.++..+|+.+.|.+.++++.+. .++ ... .+...++ .+....| ++.+|..+|+++..
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~-------~~d~~~~~d--~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~-- 206 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNA-------IEDTVSGDN--EMILNLAESYIKFATNKETATSNFYYYEELSQ-- 206 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------SCHHHHHHH--HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-------Cccccccch--HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--
Confidence 8889999999999999999999998776 221 011 1223444 3455556 99999999999654
Q ss_pred HHhhCCCChh--HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCC--CcchhHHHHHHHHHHHhcCChHHHHHH
Q 010063 404 EKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD--DQSISFPMLHLGITLYHLNRDKEAEKL 479 (519)
Q Consensus 404 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~ 479 (519)
..|. ....+.+ ++..+|++++|...++.+++..-.....+ .|....++.+++.+...+|+ +|.++
T Consensus 207 ------~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l 275 (310)
T 3mv2_B 207 ------TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDL 275 (310)
T ss_dssp ------TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHH
T ss_pred ------hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHH
Confidence 2333 2233333 89999999999999997666432210000 25667778888888888997 88888
Q ss_pred HHHHHHHHHHhcCCCCCcc
Q 010063 480 VLEALYIREIAFGKDSLPV 498 (519)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~ 498 (519)
++++.+.. |+||.+
T Consensus 276 ~~qL~~~~-----P~hp~i 289 (310)
T 3mv2_B 276 TNQLVKLD-----HEHAFI 289 (310)
T ss_dssp HHHHHHTT-----CCCHHH
T ss_pred HHHHHHhC-----CCChHH
Confidence 88887754 777755
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.22 E-value=2.4e-10 Score=93.26 Aligned_cols=126 Identities=11% Similarity=0.002 Sum_probs=101.4
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC----CC-------chHHHHHHHHHHHHHHccccHHHHHHHH
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK----DD-------EPLLDAILLHMGSMYSTLENYEKSMLVY 226 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 226 (519)
....+..+...|..++..|+|++|+..|.+++.+..... +. .|....++.++|.+|...|++++|+..+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 445677899999999999999999999999998843311 11 3566778999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH-HHHHHHHHHHHh
Q 010063 227 QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV-LPLFSLGSLFIK 299 (519)
Q Consensus 227 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~ 299 (519)
++++.+ +|....+++.+|.++...|++++|+..|++++++ .|... .+...++.+...
T Consensus 87 ~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 87 SEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHH
T ss_pred HHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHH
Confidence 999987 2444778999999999999999999999999998 34444 445555555443
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.21 E-value=1e-09 Score=85.52 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (519)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (519)
.++.+|.++...|++++|+..++++++. .++++....++..+|.++...|++++|+..+++++.. .++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 4678899999999999999999999886 3345555588999999999999999999999999986 23444
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
....++..+|.++...|++++|+..+++++..
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999987
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.21 E-value=2.2e-09 Score=96.98 Aligned_cols=244 Identities=9% Similarity=-0.044 Sum_probs=180.1
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHh
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN 278 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 278 (519)
+....++..+..+....+..++|+..+.+++.+ +|....+++..+.++...| .+++++..+.+++..
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~---- 118 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ---- 118 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Confidence 445555666666677777778999999999987 3445778889999999999 599999999999875
Q ss_pred cCCCChhhHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH--------HH
Q 010063 279 RGTESADLVLPLFSLGSLFIKE-G-KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE--------EA 348 (519)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A 348 (519)
+|....+++..+.++... + ++++++.++.++++ .+|....++...+.+....|.++ ++
T Consensus 119 ----nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--------~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eE 186 (349)
T 3q7a_A 119 ----NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--------PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSE 186 (349)
T ss_dssp ----TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--------SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhccccccchhhHHHH
Confidence 677789999999999887 7 89999999999886 46777778999999998888877 89
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 010063 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-------GQEGRELLEECLLITEKYKGKEHPSFVTHLLNL 421 (519)
Q Consensus 349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 421 (519)
+++++++++. .+.+ ..+++..+.++...++ ++++++++++++.+ +|....++..+
T Consensus 187 Le~~~k~I~~-------dp~N---~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Yl 248 (349)
T 3q7a_A 187 LDWCNEMLRV-------DGRN---NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYL 248 (349)
T ss_dssp HHHHHHHHHH-------CTTC---HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHHHHHHHh-------CCCC---HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 9999998887 2222 4577889999988887 67888888888774 45556778777
Q ss_pred HHHHHhccCHHH------------HHH-HHHHHHHHHHHhcCCC-----CcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063 422 AASYSRSKNFVE------------AER-LLRICLDIMTKTVGPD-----DQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (519)
Q Consensus 422 a~~~~~~g~~~~------------A~~-~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (519)
..++...|+... .+. .+....+...+..+.. .+....++.-|+.+|...|+.++|.+.++..
T Consensus 249 r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 249 RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 778877766400 000 0111222222222211 1345567888999999999999999988876
Q ss_pred HH
Q 010063 484 LY 485 (519)
Q Consensus 484 ~~ 485 (519)
.+
T Consensus 329 ~~ 330 (349)
T 3q7a_A 329 SS 330 (349)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.20 E-value=4.2e-09 Score=95.20 Aligned_cols=241 Identities=11% Similarity=0.016 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHhcCCC
Q 010063 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKT 240 (519)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 240 (519)
..++..+..+....+..++|+..+++++.+. |....+++..+.++...| .+++++.++.+++..
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-------- 118 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-------- 118 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------
Confidence 3344444444445566678999999998875 555667999999999999 599999999999864
Q ss_pred CHHHHHHHHHHHHHHhhc-C-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHH--------HHHHHH
Q 010063 241 SILLVTSLLGMAKVLGSI-G-RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--------DAESVF 310 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~ 310 (519)
+|....+++..+.++... + ++++++.++.++++. +|....+++..+.+....|.++ ++++++
T Consensus 119 nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 344577888889999887 7 899999999998864 6777889999999998888887 899999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 010063 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN-------AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383 (519)
Q Consensus 311 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~ 383 (519)
+++++. +|....+++..+.++...++ ++++++++++++.. .+++ ..+++.+..++
T Consensus 191 ~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-------~P~n---~SaW~Ylr~Ll 252 (349)
T 3q7a_A 191 NEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-------IPHN---VSAWNYLRGFL 252 (349)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHH
T ss_pred HHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHH
Confidence 999885 56777799999999999887 78999999999887 3334 34567777778
Q ss_pred HHcCChHH------------HHH-HHHHHHHHHHHhhCCC-----ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 384 HIVGRGQE------------GRE-LLEECLLITEKYKGKE-----HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 384 ~~~g~~~~------------A~~-~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
...|+... .+. .+....+...+..+.. .+....++..++.+|...|+.++|.++++...+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 253 KHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 77776410 000 0111222222222111 134556888899999999999999999988654
No 169
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.18 E-value=1e-09 Score=84.70 Aligned_cols=117 Identities=21% Similarity=0.387 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
..++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 677889999999999999999999999986 3445678899999999999999999999999885
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (519)
.|....++..+|.++...|++++|..++++++.. .++.+ .++..++.++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~~---~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPNNA---EAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCH---HHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCcH---HHHHHHHHHHHhcc
Confidence 2344567889999999999999999999999987 33333 34577788776654
No 170
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=4.3e-09 Score=93.16 Aligned_cols=262 Identities=13% Similarity=0.032 Sum_probs=170.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHH
Q 010063 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (519)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (519)
.++..+-.|+|..++.-..+ + .+..+. .....+.++|+.+|++... ..+.|..
T Consensus 19 ~ikn~fy~G~yq~~i~e~~~---~-------~~~~~~--~~~~~~~Rs~iAlg~~~~~--------------~~~~~~~- 71 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCLQEIEK---F-------SKVTDN--TLLFYKAKTLLALGQYQSQ--------------DPTSKLG- 71 (310)
T ss_dssp HHHHHHTTTCHHHHTHHHHT---S-------SCCCCH--HHHHHHHHHHHHTTCCCCC--------------CSSSTTH-
T ss_pred HHHHHHHhhHHHHHHHHHHh---c-------CccchH--HHHHHHHHHHHHcCCCccC--------------CCCCHHH-
Confidence 45566779999999873321 1 222333 3556677888899998742 1222332
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (519)
.+...++..+. ++ |+..+++.+.. +... ..++..+|.++...|++++|+.++.+.+.. ++ .
T Consensus 72 ~a~~~la~~~~--~~---a~~~l~~l~~~-----~~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~ 132 (310)
T 3mv2_B 72 KVLDLYVQFLD--TK---NIEELENLLKD-----KQNS---PYELYLLATAQAILGDLDKSLETCVEGIDN-----DE-A 132 (310)
T ss_dssp HHHHHHHHHHT--TT---CCHHHHHTTTT-----SCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-S
T ss_pred HHHHHHHHHhc--cc---HHHHHHHHHhc-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-C
Confidence 22444444442 22 66666655431 1122 233468999999999999999999998653 11 1
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Q 010063 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG------RVGMAMCSLAHAKCANG--NAEEAVELYKKA 355 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~g--~~~~A~~~~~~a 355 (519)
+....++..++.++..+|+.+.|.+.++++.+. +| +.......-|++....| ++.+|..+|+++
T Consensus 133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El 204 (310)
T 3mv2_B 133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL 204 (310)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 367888889999999999999999999998765 23 22223333344455556 999999999996
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHhccCHHH
Q 010063 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPSFVTHLLNLAASYSRSKNFVE 433 (519)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~ 433 (519)
.+. .++ ......+.+ ++..+|++++|...++..++........+ .|..+.++.+++.+....|+ +
T Consensus 205 ~~~-------~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~ 271 (310)
T 3mv2_B 205 SQT-------FPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--D 271 (310)
T ss_dssp HTT-------SCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--T
T ss_pred HHh-------CCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--H
Confidence 543 222 111122233 89999999999999997766542210000 25567788888888888897 8
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchh
Q 010063 434 AERLLRICLDIMTKTVGPDDQSIS 457 (519)
Q Consensus 434 A~~~~~~al~~~~~~~~~~~~~~~ 457 (519)
|.++++++... .|+||.+.
T Consensus 272 a~~l~~qL~~~-----~P~hp~i~ 290 (310)
T 3mv2_B 272 TEDLTNQLVKL-----DHEHAFIK 290 (310)
T ss_dssp THHHHHHHHHT-----TCCCHHHH
T ss_pred HHHHHHHHHHh-----CCCChHHH
Confidence 88999888873 46666554
No 171
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.17 E-value=9e-10 Score=85.06 Aligned_cols=117 Identities=18% Similarity=0.341 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
..++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.+++++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 4568899999999999999999999998762 222567889999999999999999999999886
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 343 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 343 (519)
.|....++..+|.++...|++++|..++++++.. .|....++..++.++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 3445678899999999999999999999999885 3444557778888776544
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.16 E-value=1.6e-09 Score=85.50 Aligned_cols=101 Identities=15% Similarity=0.078 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452 (519)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 452 (519)
...+..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------- 72 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 72 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 456789999999999999999999999985 3445678999999999999999999999999985
Q ss_pred CcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 010063 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (519)
Q Consensus 453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 489 (519)
.|....++..+|.++...|++++|+.+|++++++...
T Consensus 73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3556778999999999999999999999999998865
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.16 E-value=3e-09 Score=82.80 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (519)
.++.+|..+...|++++|+..++++++. .++++....++..+|.++...|++++|+..+++++.. .|+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-------~p~ 71 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-------YPT 71 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------CCC
Confidence 4678899999999999999999999886 3445556678999999999999999999999999987 455
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (519)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (519)
++....++..+|.++...|++++|+..+++++...
T Consensus 72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 55556678999999999999999999999998853
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.15 E-value=1.6e-09 Score=85.46 Aligned_cols=102 Identities=19% Similarity=0.149 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC
Q 010063 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (519)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (519)
.+..+..+|.++...|++++|+..|++++.. .|....++.++|.++...|++++|+..+++++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3678889999999999999999999999987 4556789999999999999999999999999986
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
.|....++..+|.++...|++++|+..+++++.....
T Consensus 73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3556678999999999999999999999999998765
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.15 E-value=1.9e-09 Score=84.03 Aligned_cols=106 Identities=8% Similarity=0.152 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC
Q 010063 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (519)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (519)
.+..+..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++...... ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 3667889999999999999999999999987 34557889999999999999999999999999986542 12
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
..+....++..+|.++...|++++|+.++++++..
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 22334778999999999999999999999999986
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.14 E-value=9.4e-10 Score=102.51 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010063 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--------GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (519)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (519)
.+..+..+|..+...|++++|+..|++++++..... ....+....++.++|.+|...|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 445688999999999999999999999998654420 012466788999999999999999999999999998
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 010063 274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350 (519)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 350 (519)
+ .|....+++.+|.+|..+|++++|+..+++++++ .|....++..++.++...++++++..
T Consensus 302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 5667889999999999999999999999999986 34445677888888888888877754
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.14 E-value=4.1e-10 Score=86.53 Aligned_cols=97 Identities=14% Similarity=0.026 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (519)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (519)
.+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++++ .|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 4678899999999999999999999987 5677899999999999999999999999999996 45
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
....++.++|.++...|++++|+..++++++..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 556689999999999999999999999998763
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.14 E-value=1.3e-09 Score=85.03 Aligned_cols=107 Identities=10% Similarity=0.097 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC
Q 010063 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239 (519)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 239 (519)
..+..+..+|..+...|++++|+..+++++... |....++..+|.++...|++++|+.++++++...... ..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 456788999999999999999999999998774 2334568899999999999999999999999986542 23
Q ss_pred CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 010063 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (519)
+.+....++..+|.++...|++++|+.+++++++.
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33445788999999999999999999999999986
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.12 E-value=1.3e-09 Score=101.50 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR--------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
+..+..+|..+...|++++|+..|++++++..... ....+....++.++|.+|..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 55678899999999999999999999999655420 0024667889999999999999999999999999984
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 010063 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394 (519)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (519)
+|....++..+|.+|...|++++|+..|++++++ .+++. .++..++.++...++++++..
T Consensus 303 --------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-------~P~~~---~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 --------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-------APEDK---AIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4666788999999999999999999999999988 33333 355778888888888777654
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.09 E-value=6.4e-10 Score=85.45 Aligned_cols=96 Identities=13% Similarity=-0.004 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
.+..+..+...|++++|+..++++++. .|..+.++..+|.++...|++++|+..+++++.+. |
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P 82 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK----------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------P 82 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C
Confidence 566888899999999999999999998 88889999999999999999999999999999875 3
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (519)
....++..+|.++...|++++|+..++++++..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344568999999999999999999999998753
No 181
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.09 E-value=3.1e-09 Score=81.03 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
...+..+|..+...|++++|+..+++++... |....++..+|.++...|++++|+..++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 3458899999999999999999999998862 222567889999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK 339 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 339 (519)
.|....++..+|.++...|++++|...++++++. .|....++..++.+.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 4556788999999999999999999999999874 344444566666543
No 182
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=3.5e-09 Score=80.72 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
+..+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+..++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 567888999999999999999999999986 4555788999999999999999999999999986
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
.|....++..+|.++...|++++|...++++++.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3445568899999999999999999999999876
No 183
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2e-09 Score=86.10 Aligned_cols=104 Identities=14% Similarity=0.069 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
+.....+..+|..+...|++++|+.+|+++++. .++++....++..+|.++...|++++|+..++++++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 94 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----- 94 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence 344566899999999999999999999999874 3344455788999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
.|....++..+|.++...|++++|+.++++++++
T Consensus 95 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 95 ---DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ---TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3455788999999999999999999999999986
No 184
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2.8e-09 Score=85.21 Aligned_cols=120 Identities=17% Similarity=0.115 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc
Q 010063 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (519)
.+..+..+..+|..+...|++++|+..+++++... ++++....++..+|.++...|++++|+..+++++...
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---- 95 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---- 95 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----
Confidence 45667889999999999999999999999998764 4444457789999999999999999999999998862
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 010063 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297 (519)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 297 (519)
++ ...++..+|.++...|++++|+.++++++++ .|....++..++.+.
T Consensus 96 -~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 96 -GG---DVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNIS 143 (148)
T ss_dssp -SC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHH
T ss_pred -cc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence 22 2677889999999999999999999999987 344445555555554
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.05 E-value=6.5e-10 Score=102.51 Aligned_cols=144 Identities=17% Similarity=0.089 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhc--CCC-------CHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--GKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYHR 270 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 270 (519)
+..+..+..+|..+...|++++|+..|++++.+..... ... ......++.++|.+|...|++++|+.++++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44556688999999999999999999999998732210 000 000114789999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHCCCHHHHH
Q 010063 271 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA-KCANGNAEEAV 349 (519)
Q Consensus 271 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~ 349 (519)
++++ .|....+++++|.+|..+|++++|+..|++++++ .|....++..++.+ ....+..+++.
T Consensus 256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 4666889999999999999999999999999875 34555677778877 44566778888
Q ss_pred HHHHHHHHHH
Q 010063 350 ELYKKALRVI 359 (519)
Q Consensus 350 ~~~~~al~~~ 359 (519)
..|.+++...
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8998888763
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=6.8e-09 Score=102.13 Aligned_cols=190 Identities=9% Similarity=-0.025 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCC----------hHHHHHHH
Q 010063 117 QLLELFNEVKSMIMMGNK-NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD----------LKFVQSLL 185 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~ 185 (519)
....+..........|++ ++|++.+++++.. .|+...+|+..+.++...|+ +++++..+
T Consensus 27 ~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~----------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~ 96 (567)
T 1dce_A 27 LYQSATQAVFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFL 96 (567)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHH
Confidence 344455555566677776 5779999999998 89999999999999999988 89999999
Q ss_pred HHHHhhhhhcCCCchHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC-CHH
Q 010063 186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE--NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAK 262 (519)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~ 262 (519)
++++... |....+|+..+.++...| ++++++..+.++++. +|....++...+.+....| .++
T Consensus 97 ~~~l~~~-------pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~ 161 (567)
T 1dce_A 97 ESCLRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPA 161 (567)
T ss_dssp HHHHHHC-------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHhC-------CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChH
Confidence 9988765 555667999999999999 779999999999986 3444778899999999999 899
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 010063 263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--------------GKAVDAESVFSRILKIYTKVYGENDGRV 328 (519)
Q Consensus 263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (519)
++++++.++++. +|....+|+..+.++... +.+++|++++.+++.+ .|..
T Consensus 162 ~el~~~~~~I~~--------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~ 225 (567)
T 1dce_A 162 EELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPND 225 (567)
T ss_dssp HHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSC
T ss_pred HHHHHHHHHHHH--------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCC
Confidence 999999999875 677789999999998874 5679999999999986 4555
Q ss_pred HHHHHHHHHHHHHCCCHHH
Q 010063 329 GMAMCSLAHAKCANGNAEE 347 (519)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~ 347 (519)
..+|+.++.++...+++++
T Consensus 226 ~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 226 QSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHhcCCCccc
Confidence 6688899999998888655
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.01 E-value=8.1e-10 Score=101.85 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchH--------------HHHHHHHHHHHHHccccHHHHHH
Q 010063 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL--------------LDAILLHMGSMYSTLENYEKSML 224 (519)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~ 224 (519)
+..+..+..+|..++..|++++|+..|++++..... ... ...+++++|.++...|++++|+.
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~----~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD----DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH----HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc----chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 445667889999999999999999999999887521 110 11378999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH-HHhCCCH
Q 010063 225 VYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL-FIKEGKA 303 (519)
Q Consensus 225 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~ 303 (519)
++++++++. |....+++++|.+|...|++++|+..|++++++ .|....++..++.+ ....+..
T Consensus 252 ~~~~al~~~--------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 252 HCNIVLTEE--------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHH
Confidence 999999862 334678999999999999999999999999887 34456677788877 4456677
Q ss_pred HHHHHHHHHHHHH
Q 010063 304 VDAESVFSRILKI 316 (519)
Q Consensus 304 ~~A~~~~~~al~~ 316 (519)
+++...|.+++..
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 8888888888775
No 188
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.00 E-value=2.8e-07 Score=92.04 Aligned_cols=230 Identities=10% Similarity=0.061 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 010063 220 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV-EIYHRVITILELNRGTESADLVLPLFSLGSLFI 298 (519)
Q Consensus 220 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 298 (519)
......|++++... |.....+...+..+...|+.++|. ..|++|+.. .|.....+..++....
T Consensus 326 ~Rv~~~Ye~aL~~~--------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~ee 389 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV--------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLSEQYE 389 (679)
T ss_dssp HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence 34567788888763 333667778888889999999997 999999875 3444567788899999
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhc------CCCC--------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063 299 KEGKAVDAESVFSRILKIYTKVY------GEND--------GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (519)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (519)
..|++++|...|++++....... .+.. .....+|...+.+..+.|..+.|..+|.+|++....
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~--- 466 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL--- 466 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG---
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---
Confidence 99999999999999998642111 0110 124456777788888899999999999999875111
Q ss_pred CCCCchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 365 MSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
.. ..++...|.+....+ +.+.|..+|+++++... +.+. .+...+......|+.+.|..+|++++.
T Consensus 467 ---~~---~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~~---~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 467 ---VT---PDIYLENAYIEYHISKDTKTACKVLELGLKYFA-----TDGE---YINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp ---SC---THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCHH---HHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred ---CC---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CchH---HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 11 123345566666654 58999999999998652 2333 445667777888999999999999987
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.. ++.......+......-...|+.+.+....+++.+..
T Consensus 533 ~~-----~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 533 KI-----SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TS-----SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred hc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 31 1112455667777778888999999999999998765
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.98 E-value=1.4e-09 Score=83.17 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=76.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 010063 215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 294 (519)
Q Consensus 215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 294 (519)
..|++++|+.+|++++++ +.++|....++.++|.+|...|++++|+.++++++++ .|....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999874 2235777899999999999999999999999999987 456688999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHH
Q 010063 295 SLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
.++...|++++|+..+++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999863
No 190
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.95 E-value=1.6e-09 Score=81.85 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
..++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------- 69 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-------- 69 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 445678999999999999999999999987 3445778999999999999999999999999985
Q ss_pred Chh--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Q 010063 325 DGR--VGMAMCSLAHAKCAN-GNAEEAVELYKKALRV 358 (519)
Q Consensus 325 ~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 358 (519)
.|. ...++..+|.++... |++++|++++++++..
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 344 566889999999999 9999999999998875
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.94 E-value=2.6e-08 Score=97.98 Aligned_cols=174 Identities=7% Similarity=-0.054 Sum_probs=146.4
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHHhcCCCChhHH
Q 010063 260 RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------AVDAESVFSRILKIYTKVYGENDGRVG 329 (519)
Q Consensus 260 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (519)
..++|++.+.+++.+ .|....+|+..+.++...|+ +++++..+++++.. +|...
T Consensus 44 ~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~y 107 (567)
T 1dce_A 44 LDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSY 107 (567)
T ss_dssp CSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred CCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCCH
Confidence 346789999999987 67788999999999999988 99999999999984 57777
Q ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHh
Q 010063 330 MAMCSLAHAKCANG--NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKY 406 (519)
Q Consensus 330 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 406 (519)
.+|...+.++...| ++++++++++++++.. +.. ..+|...+.++...| .+++++++++++++
T Consensus 108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-------~~N---~~aW~~R~~~l~~l~~~~~~el~~~~~~I~----- 172 (567)
T 1dce_A 108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ERN---FHCWDYRRFVAAQAAVAPAEELAFTDSLIT----- 172 (567)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-----
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-------ccc---ccHHHHHHHHHHHcCCChHHHHHHHHHHHH-----
Confidence 89999999999999 7799999999999982 222 567788999999999 89999999998876
Q ss_pred hCCCChhHHHHHHHHHHHHHhc--------------cCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCC
Q 010063 407 KGKEHPSFVTHLLNLAASYSRS--------------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472 (519)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 472 (519)
.+|....+|...+.++... +.+++|++++.+++.+ .|....++..++.++...++
T Consensus 173 ---~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 173 ---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp ---TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCCC
T ss_pred ---HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCCC
Confidence 3566678888888888774 6689999999999984 35566788899999998888
Q ss_pred hHH
Q 010063 473 DKE 475 (519)
Q Consensus 473 ~~~ 475 (519)
+++
T Consensus 242 ~~~ 244 (567)
T 1dce_A 242 HDV 244 (567)
T ss_dssp CSC
T ss_pred ccc
Confidence 665
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.94 E-value=3.6e-09 Score=80.79 Aligned_cols=89 Identities=20% Similarity=0.169 Sum_probs=74.2
Q ss_pred hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010063 174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253 (519)
Q Consensus 174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 253 (519)
..|++++|+..|++++... .++|....++..+|.++...|++++|+.+++++++.. |....++..+|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--------PNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCchHHHHHHHH
Confidence 4689999999999998752 3357888889999999999999999999999999872 333678889999
Q ss_pred HHhhcCCHHHHHHHHHHHHHH
Q 010063 254 VLGSIGRAKKAVEIYHRVITI 274 (519)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al~~ 274 (519)
++...|++++|+..+++++..
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999987
No 193
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.93 E-value=3e-07 Score=91.83 Aligned_cols=230 Identities=10% Similarity=-0.005 Sum_probs=170.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHH-HHHHHHHhhhhhcCCCchHHHHHHHHHHHHH
Q 010063 135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ-SLLDMMSGIVDSLKDDEPLLDAILLHMGSMY 213 (519)
Q Consensus 135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (519)
+.....|++++.. .|..+.+|...+......|+.++|. .+|++++... |.....+...+...
T Consensus 326 ~Rv~~~Ye~aL~~----------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-------P~s~~Lwl~~a~~e 388 (679)
T 4e6h_A 326 ARMTYVYMQAAQH----------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-------PNSAVLAFSLSEQY 388 (679)
T ss_dssp HHHHHHHHHHHHH----------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 3456778888877 6667889999999999999999997 9999998754 22234477888889
Q ss_pred HccccHHHHHHHHHHHHHHHHHhc------CCCC--------HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 214 STLENYEKSMLVYQRVINVLESRY------GKTS--------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
...|++++|...|++++....... .+.. .....++...+......|+.+.|..+|.+|++..
T Consensus 389 e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~---- 464 (679)
T 4e6h_A 389 ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK---- 464 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----
Confidence 999999999999999998642110 0110 1234567777888888899999999999998641
Q ss_pred CCCChhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
.+.....+...+.+....+ +++.|..+|+++++.+. +.+ ..+...+......|+.+.|..+|++++..
T Consensus 465 ---~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~---~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 465 ---KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-----TDG---EYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp ---GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCH---HHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred ---CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----Cch---HHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 1112345556666666665 49999999999999742 223 34456677778889999999999999875
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 010063 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (519)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (519)
. ++......++......-...|+.+.+..+.+++.+..
T Consensus 534 ~-------~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 534 I-------SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp S-------SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred c-------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 2223345566777888888999999999999988764
No 194
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.91 E-value=2.1e-09 Score=81.13 Aligned_cols=97 Identities=22% Similarity=0.174 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (519)
.++..+|.++...|++++|+..++++++.. ++ ...++..+|.++...|++++|+.+++++++. .
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~ 70 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-----PE---ESKYWLMKGKALYNLERYEEAVDCYNYVINV--------I 70 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-----CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------S
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----cC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence 347889999999999999999999998862 22 2567889999999999999999999999986 3
Q ss_pred hh--hHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHH
Q 010063 284 AD--LVLPLFSLGSLFIKE-GKAVDAESVFSRILKI 316 (519)
Q Consensus 284 ~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 316 (519)
|. ...++..+|.++... |++++|+.++++++..
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 44 678899999999999 9999999999998864
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.83 E-value=1.1e-08 Score=80.43 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=76.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHHHHhcCCCCh
Q 010063 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA----------VDAESVFSRILKIYTKVYGENDG 326 (519)
Q Consensus 257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~ 326 (519)
+.+.+++|+..+++++++ .|..+.++.++|.++...+++ ++|+..|++++++ +|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 457789999999999998 677889999999999998875 5999999999986 57
Q ss_pred hHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Q 010063 327 RVGMAMCSLAHAKCANG-----------NAEEAVELYKKALRV 358 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~ 358 (519)
....+++++|.+|..+| ++++|+.+|++|+++
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 77789999999999875 899999999999998
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.80 E-value=1.8e-08 Score=79.20 Aligned_cols=87 Identities=10% Similarity=0.107 Sum_probs=76.7
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHhhhhhcCCC
Q 010063 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL----------KFVQSLLDMMSGIVDSLKDD 198 (519)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~ 198 (519)
-+.+.+++|+..+++++++ .|..+.++.++|.++...|++ ++|+..|++++++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l----------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld------ 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS----------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID------ 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHhHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC------
Confidence 3456789999999999999 888999999999999998876 49999999999886
Q ss_pred chHHHHHHHHHHHHHHccc-----------cHHHHHHHHHHHHHH
Q 010063 199 EPLLDAILLHMGSMYSTLE-----------NYEKSMLVYQRVINV 232 (519)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~ 232 (519)
|....+++++|.+|...| ++++|+.+|++|+++
T Consensus 77 -P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 77 -PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 666677999999999875 899999999999997
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.77 E-value=1e-07 Score=68.66 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
Q 010063 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (519)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (519)
+....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++++
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----- 72 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----- 72 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 355778899999999999999999999999987 4555788999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCC
Q 010063 322 GENDGRVGMAMCSLAHAKCANG 343 (519)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g 343 (519)
.|....++.++|.++...|
T Consensus 73 ---~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ---DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---CTTCHHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHhcC
Confidence 3455567888998887654
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.76 E-value=4.9e-08 Score=74.11 Aligned_cols=84 Identities=25% Similarity=0.196 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh
Q 010063 390 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 469 (519)
Q Consensus 390 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 469 (519)
++|+..|++++.. .|....++..+|.+|...|++++|+.+|++++.+ .|....++..+|.+|..
T Consensus 2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence 3577778887763 4455678999999999999999999999999984 35567788999999999
Q ss_pred cCChHHHHHHHHHHHHHHHH
Q 010063 470 LNRDKEAEKLVLEALYIREI 489 (519)
Q Consensus 470 ~g~~~~A~~~~~~a~~~~~~ 489 (519)
.|++++|+.+|++++++...
T Consensus 66 ~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccc
Confidence 99999999999999998754
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.73 E-value=8.5e-09 Score=77.73 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
+..+..+|.++...|++++|+..|++++++ .|....++.++|.++...|++++|+..+++++++. ++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence 567889999999999999999999999987 45567889999999999999999999999999852 11
Q ss_pred C---hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 010063 325 D---GRVGMAMCSLAHAKCANGNAEEAVELYK 353 (519)
Q Consensus 325 ~---~~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (519)
+ .....++..+|.++...|++++|+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 1 1126678889999988888777665443
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.71 E-value=1.4e-07 Score=67.87 Aligned_cols=86 Identities=15% Similarity=0.261 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
+....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++++
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----- 72 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----- 72 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 4556678999999999999999999999999862 223567889999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHhCC
Q 010063 280 GTESADLVLPLFSLGSLFIKEG 301 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g 301 (519)
.|....++.++|.++...|
T Consensus 73 ---~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ---DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---CTTCHHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHhcC
Confidence 4556788889999887654
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.3e-07 Score=70.97 Aligned_cols=91 Identities=10% Similarity=-0.034 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCC
Q 010063 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494 (519)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 494 (519)
+..+..+|.++...|++++|+..|++++.+ .|....++.++|.++..+|++++|+..+++++++. ++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence 467889999999999999999999999985 35556788999999999999999999999999753 44
Q ss_pred CCcc-hhhHHHHHHHHHHHHhhhcc
Q 010063 495 SLPV-GKLFCFVLFGLVWFCLLLYK 518 (519)
Q Consensus 495 ~~~~-~~~~~~~~l~~~~~~lg~~k 518 (519)
++.. ....++..+|.++..+|++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQ 95 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHh
Confidence 4222 22467889999999999765
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.69 E-value=3.8e-07 Score=71.54 Aligned_cols=111 Identities=15% Similarity=0.183 Sum_probs=93.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010063 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (519)
Q Consensus 216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (519)
.+++++|+.+|+++.+. .++. +. +|.+|...+.+++|+.+|+++.+. ....++++||.
T Consensus 8 ~~d~~~A~~~~~~aa~~-------g~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~ 65 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-------NEMF---GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-------CCHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHH
Confidence 35789999999999764 1221 22 899999999999999999999864 23678999999
Q ss_pred HHHh----CCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 010063 296 LFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV 358 (519)
Q Consensus 296 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 358 (519)
+|.. .+++++|+.+|+++.+. ....++.+||.+|.. .+++++|+.+|+++.+.
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9998 89999999999999873 234578999999999 99999999999999875
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.68 E-value=1.1e-07 Score=70.02 Aligned_cols=91 Identities=14% Similarity=0.005 Sum_probs=71.8
Q ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 010063 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (519)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 490 (519)
.|....++..+|.+|...|++++|+.+|++++++ .|....++..+|.+|...|++++|+..|++++++....
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 3555678999999999999999999999999985 35566789999999999999999999999999987543
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHhhhc
Q 010063 491 FGKDSLPVGKLFCFVLFGLVWFCLLLY 517 (519)
Q Consensus 491 ~~~~~~~~~~~~~~~~l~~~~~~lg~~ 517 (519)
++. .....+...+...+..
T Consensus 75 -----~~~---~~~~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 75 -----GTQ---KDLSELQDAKLKAEGL 93 (100)
T ss_dssp -----SCH---HHHHHHHHHHHHHHTT
T ss_pred -----Cch---hHHHHHHHHHHHcccc
Confidence 222 2344666666666543
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.66 E-value=3.1e-07 Score=72.10 Aligned_cols=110 Identities=17% Similarity=0.131 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 010063 343 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 422 (519)
Q Consensus 343 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 422 (519)
+++++|+.+|+++.+. + ++ . +. +|.+|...+..++|+.+|+++.+. . ...+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~-------g-~~-~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g---~~~a~~~Lg 64 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-------N-EM-F---GC--LSLVSNSQINKQKLFQYLSKACEL-------N---SGNGCRFLG 64 (138)
T ss_dssp HHHHHHHHHHHHHHHT-------T-CT-T---HH--HHHHTCTTSCHHHHHHHHHHHHHT-------T---CHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-------C-CH-h---hh--HHHHHHcCCCHHHHHHHHHHHHcC-------C---CHHHHHHHH
Confidence 4678999999998875 2 11 1 11 899999999999999999999863 2 346889999
Q ss_pred HHHHh----ccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh----cCChHHHHHHHHHHHHH
Q 010063 423 ASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI 486 (519)
Q Consensus 423 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 486 (519)
.+|.. .+++++|+.+|+++.+. ....++.+||.+|.. .+++++|..+|+++.+.
T Consensus 65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 65 DFYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99998 89999999999999872 235678999999999 89999999999999873
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.64 E-value=1.2e-07 Score=71.93 Aligned_cols=84 Identities=10% Similarity=0.091 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHH
Q 010063 135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS 214 (519)
Q Consensus 135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (519)
++|+..++++++. .|..+.++..+|.++...|++++|+..+++++... |....++..+|.++.
T Consensus 2 ~~a~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 2 QAITERLEAMLAQ----------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-------PTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CCHHHHHHHHHTT----------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHH
Confidence 4578888888876 66677899999999999999999999999999875 334556899999999
Q ss_pred ccccHHHHHHHHHHHHHHHHH
Q 010063 215 TLENYEKSMLVYQRVINVLES 235 (519)
Q Consensus 215 ~~g~~~~A~~~~~~al~~~~~ 235 (519)
..|++++|+..|++++.+...
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhccc
Confidence 999999999999999988654
No 206
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.63 E-value=3.7e-06 Score=81.41 Aligned_cols=168 Identities=9% Similarity=0.000 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHH
Q 010063 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---------AEEAVELYKKALRVI 359 (519)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~ 359 (519)
.++.+-..+.+.|+.++|+.+|+++.+. | -.|+. .+|+.+-..+...+. .++|.++|+++...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----G-v~pd~-~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----G-VQLSQ-YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----T-CCCCH-HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCCH-hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence 4556668889999999999999998763 1 23333 367777777765443 67888888876543
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 010063 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (519)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (519)
...|+ ..+++.+...|.+.|++++|..++++.... .-.|+ ..+|..+-..|.+.|+.++|.++|+
T Consensus 100 ----G~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 100 ----KVVPN----EATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQPR-LRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp ----TCCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCc-cceehHHHHHHHHCCCHHHHHHHHH
Confidence 12232 236688999999999999999999987542 12333 4578888999999999999999999
Q ss_pred HHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
+..+. .-.|+ ..++..|-..|.+.|+.++|.+++++..+.
T Consensus 165 ~M~~~------G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 165 HMVES------EVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhc------CCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 98762 22333 457889999999999999999999988653
No 207
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=0.0001 Score=71.29 Aligned_cols=310 Identities=9% Similarity=-0.052 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhhhhhcC
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD-LKFVQSLLDMMSGIVDSLK 196 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~ 196 (519)
++.+++.+...+-.|+++.+..+|++++.. .| ...++......-...++ .+.....|+.++... +
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~----------~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v---g 79 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKK----------SY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF---E 79 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTT----------CC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHS---T
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhcc----------CC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc---C
Confidence 344555665566669999999999999874 33 34455555555555553 355667778777654 2
Q ss_pred CCchHHHHHHHHHHHHHH----ccccHHHHHHHHHHHHHHHHHhcCCCCHHHHH--------------------------
Q 010063 197 DDEPLLDAILLHMGSMYS----TLENYEKSMLVYQRVINVLESRYGKTSILLVT-------------------------- 246 (519)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-------------------------- 246 (519)
.+ +....+|......+. .+|+.+.+...|++++..- ..+......
T Consensus 80 ~d-~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P----~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~ 154 (493)
T 2uy1_A 80 NY-WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP----MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQ 154 (493)
T ss_dssp TC-TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC----CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CC-cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh----hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHH
Confidence 11 222233444444433 3567888888888887620 000000000
Q ss_pred -------------------HHHHHHHHHhhcCC---------HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 010063 247 -------------------SLLGMAKVLGSIGR---------AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFI 298 (519)
Q Consensus 247 -------------------~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 298 (519)
.+... +-...++ .......|++++.. .|.....+...+..+.
T Consensus 155 ~ar~~y~~~~~~~~~~s~~~W~~y--~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 155 SSFQRYQQIQPLIRGWSVKNAARL--IDLEMENGMKLGGRPHESRMHFIHNYILDS--------FYYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHTCSHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHH--HHHHhcCCccCcchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHH
Confidence 01111 1111121 23344566666654 2444677888888899
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhc---------CC-----------------------CChhHHHHHHHHHHHHHHCCCHH
Q 010063 299 KEGKAVDAESVFSRILKIYTKVY---------GE-----------------------NDGRVGMAMCSLAHAKCANGNAE 346 (519)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~~~~~---------~~-----------------------~~~~~~~~~~~la~~~~~~g~~~ 346 (519)
..|+.++|...|++++.. .... .. ........+...+....+.+..+
T Consensus 225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~ 303 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE 303 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999875 2100 00 00001122333333444455666
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 010063 347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425 (519)
Q Consensus 347 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 425 (519)
.|...|+++ .. .+.. ...+...|.+....+ +.+.|..+|+.+++.. ++.+. .+...+...
T Consensus 304 ~AR~i~~~A-~~-------~~~~---~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~~---~~~~yid~e 364 (493)
T 2uy1_A 304 LFRKLFIEL-GN-------EGVG---PHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-----PDSTL---LKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHH-TT-------SCCC---HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCHH---HHHHHHHHH
T ss_pred HHHHHHHHh-hC-------CCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCHH---HHHHHHHHH
Confidence 666666666 21 1111 123333444444444 5777777777777642 22333 233345556
Q ss_pred HhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 010063 426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (519)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (519)
...|+.+.|...|+++. . ....+......-...|+.+.+...++++++...
T Consensus 365 ~~~~~~~~aR~l~er~~---------k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE---------K---TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHTCHHHHHHHHHHSC---------C---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH---------H---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 66777777777776651 1 123344445555566888888888888887553
No 208
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.59 E-value=4.2e-06 Score=81.00 Aligned_cols=166 Identities=12% Similarity=-0.009 Sum_probs=125.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHH
Q 010063 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK---------AVDAESVFSRILKIYT 318 (519)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~ 318 (519)
+..+-..+.+.|++++|.++|+++.+. .-.....+|+.+-.++...+. .++|..+|++....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~-------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-- 99 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRN-------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-- 99 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHH-------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence 455668889999999999999998764 122235677777777765544 67788888876542
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (519)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (519)
.-.|+. .+++.+...|.+.|++++|..+++++.+. ...|+ ..+|+.+...|.+.|+.++|.+++++
T Consensus 100 ----G~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 100 ----KVVPNE-ATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPR----LRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp ----TCCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCc----cceehHHHHHHHHCCCHHHHHHHHHH
Confidence 123444 48899999999999999999999987653 12222 34668889999999999999999998
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 010063 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (519)
Q Consensus 399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (519)
..+. .-.|+ ..++..+-..|.+.|+.++|.+++++..+
T Consensus 166 M~~~------G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 166 MVES------EVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhc------CCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 7652 12333 35788899999999999999999998765
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.58 E-value=6.3e-07 Score=65.82 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=62.4
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
.|....++..+|.++...|++++|+..|++++++ .|....++.++|.+|...|++++|+..+++++++...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4566789999999999999999999999999986 3555568999999999999999999999999998665
No 210
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.38 E-value=0.00022 Score=65.54 Aligned_cols=212 Identities=9% Similarity=0.002 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS-IGRAKKAVEIYHRVITILELNRGTE 282 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 282 (519)
.+...+|..|...|++++-..++.......... .....+.....+-..+.. -+..+.-++...++++..+..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---- 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence 357899999999999999888887665443222 223445555555555554 355666677777777776542
Q ss_pred ChhhHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 283 SADLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 283 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
...... .-..+|..|...|+|.+|...+.+.++-+++. ++......++.....+|...+++.++...+.++.....
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 122222 34589999999999999999999999887664 23456778888889999999999999999999998876
Q ss_pred hhccCCCCchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccC
Q 010063 361 DSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430 (519)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 430 (519)
.. .+++...+.....-|..+. ..++|.+|..+|-++..-+... ..+....+...++.+-...++
T Consensus 171 ai---~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 171 AI---YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HS---CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred cC---CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCC
Confidence 52 3556666777777888888 8999999999999987655432 234333333344444444444
No 211
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.35 E-value=0.00023 Score=65.44 Aligned_cols=188 Identities=13% Similarity=0.080 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
.+...+|..|...|++++-.+++......+... .....+....++-..+.. -+..+.-++...++++.++..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---- 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence 466789999999999999988887765554332 123334445555555544 355666677888888776542
Q ss_pred ChhHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 325 DGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 325 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
...... .-..+|.+|...|+|.+|.+.+.+..+..++. .+......++..-..+|...+++.++...+.++...
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~----dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL----DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS----SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 223333 34589999999999999999999998887652 346677888888999999999999999999999988
Q ss_pred HHHhhCCCChh-HHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHH
Q 010063 403 TEKYKGKEHPS-FVTHLLNLAASYS-RSKNFVEAERLLRICLDIMT 446 (519)
Q Consensus 403 ~~~~~~~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 446 (519)
..... .+|. .+.....-|..+. ..++|.+|..+|-++..-+.
T Consensus 169 ~~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 169 ANAIY--CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred hccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 76542 3443 3445556677888 89999999999999876554
No 212
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.32 E-value=8.8e-05 Score=71.72 Aligned_cols=284 Identities=12% Similarity=0.045 Sum_probs=159.8
Q ss_pred HcC-ChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHH
Q 010063 130 MMG-NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (519)
Q Consensus 130 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (519)
..| +++.|...|++++... |. |+++.+..+|++++... + +..+ |..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~----------P~---------------~~~e~~~~iferal~~~----p-s~~L---W~~ 52 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY----------MS---------------KDYRSLESLFGRCLKKS----Y-NLDL---WML 52 (493)
T ss_dssp ------CCHHHHHHHHHHHH----------HT---------------TCHHHHHHHHHHHSTTC----C-CHHH---HHH
T ss_pred HcCcchHHHHHHHHHHHHHC----------CC---------------CCHHHHHHHHHHHhccC----C-CHHH---HHH
Confidence 356 4888999999988772 21 88999999999998753 1 2222 333
Q ss_pred HHHHHHccc-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 209 MGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTES 283 (519)
Q Consensus 209 l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (519)
........+ ..+.....|+.++... |.+ +.....+......+. ..|+.+.+..+|++++.+- ..+.
T Consensus 53 Y~~f~~~~~~~~~~i~~~fe~al~~v----g~d-~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P----~~~~ 123 (493)
T 2uy1_A 53 YIEYVRKVSQKKFKLYEVYEFTLGQF----ENY-WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP----MGSL 123 (493)
T ss_dssp HHHHHHHHC----CTHHHHHHHHHHS----TTC-TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC----CTTH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHc----CCC-cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh----hhhH
Confidence 333333333 2344566677776642 322 212344444444332 2466778888888887520 0000
Q ss_pred hhhHH---------------------------------------------HHHHHHHHHHhCCC---------HHHHHHH
Q 010063 284 ADLVL---------------------------------------------PLFSLGSLFIKEGK---------AVDAESV 309 (519)
Q Consensus 284 ~~~~~---------------------------------------------~~~~la~~~~~~g~---------~~~A~~~ 309 (519)
..... .+... +-...++ .+.....
T Consensus 124 ~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y--~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 124 SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARL--IDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHH--HHHHhcCCccCcchhhHHHHHHH
Confidence 00000 11111 1111121 2234455
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--------CC---------------
Q 010063 310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY--------MS--------------- 366 (519)
Q Consensus 310 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~--------------- 366 (519)
|++++... |.....|...+..+...|+.++|...|++++.. ..... ..
T Consensus 202 ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 202 HNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence 66655532 333567788888899999999999999999976 32100 00
Q ss_pred -------CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc-CHHHHHHHH
Q 010063 367 -------LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAERLL 438 (519)
Q Consensus 367 -------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~ 438 (519)
..+.....++...+....+.++.+.|..+|+++ . . +. .....+...|.+....+ +.+.|...|
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~--~~--~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G----N--EG--VGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----T--SC--CCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----C--CC--CChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 001111233455555566677888888888887 2 1 11 12335555566655555 699999999
Q ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010063 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (519)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (519)
+.++... ++.|.. +...+......|+.+.|...|+++
T Consensus 344 e~al~~~-----~~~~~~---~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 344 SSGLLKH-----PDSTLL---KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHC-----TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHC-----CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999842 334443 344567778889999998887775
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.31 E-value=1.9e-06 Score=63.01 Aligned_cols=88 Identities=13% Similarity=0.134 Sum_probs=68.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL-PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327 (519)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 327 (519)
...|..+...|++++|+..++++++. .|.... ++..+|.++...|++++|+..|++++++ .|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence 46788999999999999999999987 455567 8999999999999999999999999986 233
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010063 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (519)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (519)
...++.+ +.+.++...|+++.....
T Consensus 68 ~~~~~~~--------~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 68 SPALQAR--------KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp STHHHHH--------HHHHHHHHHHCCTTHHHH
T ss_pred cHHHHHH--------HHHHHHHHHHHHHhccCc
Confidence 2223322 556777777777766643
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.29 E-value=2.2e-06 Score=62.70 Aligned_cols=87 Identities=14% Similarity=0.174 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVA-ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
+..+..+...|++++|+..++++++. .|..+. ++..+|.++...|++++|+..|++++.+. ++.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~ 69 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT----------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN----PDSP 69 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH----------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCcH
Confidence 46778889999999999999999987 666677 99999999999999999999999998875 2222
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (519)
.. +.. +.+.+++..|+++....
T Consensus 70 ~~---~~~--------~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 70 AL---QAR--------KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp HH---HHH--------HHHHHHHHHHCCTTHHH
T ss_pred HH---HHH--------HHHHHHHHHHHHHhccC
Confidence 22 211 66777777777766553
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.22 E-value=1.8e-05 Score=58.21 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=65.2
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (519)
.+.+|..++..|+|..|+.+|++|++....... .......++..+|.++..+|++++|+.++++++++ .|.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCC
Confidence 678999999999999999999999988654211 12345778899999999999999999999999987 444
Q ss_pred hHHHHHHHH
Q 010063 286 LVLPLFSLG 294 (519)
Q Consensus 286 ~~~~~~~la 294 (519)
...+..+++
T Consensus 79 ~~~~~~n~~ 87 (104)
T 2v5f_A 79 HQRANGNLK 87 (104)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHhhHH
Confidence 455666665
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.16 E-value=0.00027 Score=61.13 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHhcCCCChh-HHHH
Q 010063 260 RAKKAVEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKE-----GKAVDAESVFSRILKIYTKVYGENDGR-VGMA 331 (519)
Q Consensus 260 ~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~ 331 (519)
...+|...+++++++ +|. ...++..+|.+|... |+.++|..+|++++++ +|. ...+
T Consensus 178 ~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~ 241 (301)
T 3u64_A 178 TVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDH 241 (301)
T ss_dssp HHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHH
T ss_pred hHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchH
Confidence 357788889999988 344 567999999999995 9999999999999997 343 2557
Q ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHH
Q 010063 332 MCSLAHAKCA-NGNAEEAVELYKKALRV 358 (519)
Q Consensus 332 ~~~la~~~~~-~g~~~~A~~~~~~al~~ 358 (519)
+...|..++. .|++++|..++++++..
T Consensus 242 ~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 242 HITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 7788999888 59999999999999987
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.16 E-value=9.2e-05 Score=54.40 Aligned_cols=71 Identities=20% Similarity=0.136 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
+.-.+.+|..+...|+|..|+.+|++|++....... ..+....++..+|.++.++|++++|+.++++++++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456778999999999999999999999987653311 12456678999999999999999999999999987
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.14 E-value=9e-05 Score=66.93 Aligned_cols=134 Identities=14% Similarity=0.044 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhc---C-ChHHHHHHHHHHHhhhh
Q 010063 121 LFNEVKSMIMMGN---KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---G-DLKFVQSLLDMMSGIVD 193 (519)
Q Consensus 121 l~~~~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~~~~~~~ 193 (519)
++-++..++..++ ..+|+.+|++++++ +|..+.++..++.+|... + ........+..+.....
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l----------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS----------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4445555555444 58999999999999 888888888777777532 1 11122222233332221
Q ss_pred hcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010063 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (519)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (519)
. ....|..+.++..++..+...|++++|+..+++|+.+. ++ ..++..+|.++...|++++|++.|++|+.
T Consensus 269 a-~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~s----~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 269 T-LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----MS----WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp T-CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h-cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 12224445567788888888899999999999999972 22 45678899999999999999999999999
Q ss_pred H
Q 010063 274 I 274 (519)
Q Consensus 274 ~ 274 (519)
+
T Consensus 339 L 339 (372)
T 3ly7_A 339 L 339 (372)
T ss_dssp H
T ss_pred c
Confidence 8
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.12 E-value=0.00026 Score=63.94 Aligned_cols=133 Identities=12% Similarity=0.043 Sum_probs=91.9
Q ss_pred HHHHHHHHc---cccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc---C-CHHHHHHHHHHHHHHHHHhc
Q 010063 207 LHMGSMYST---LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---G-RAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 207 ~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g-~~~~A~~~~~~al~~~~~~~ 279 (519)
+..|..+.. ...+.+|+.+|++++++ +|..+.++..++.+|... + .......-+.+++......
T Consensus 200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~- 270 (372)
T 3ly7_A 200 FYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL- 270 (372)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc-
Confidence 334444443 34568999999999987 354455666666665421 1 1112223333444422211
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
...+..+.++..++..+...|++++|+..+++++.+ + +. ..++..+|.++...|++++|++.|++|+.+
T Consensus 271 -~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-------n-~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 271 -PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-------E-MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp -GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------C-CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-------C-CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 234566788888888888889999999999999997 2 33 347788999999999999999999999998
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.02 E-value=0.0014 Score=56.63 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHH
Q 010063 218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI-----GRAKKAVEIYHRVITILELNRGTESAD-LVLPLF 291 (519)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~ 291 (519)
...+|...+++++++- .......++..+|.+|... |+.++|..+|++++++ +|. ...++.
T Consensus 178 ~l~~A~a~lerAleLD------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~v 243 (301)
T 3u64_A 178 TVHAAVMMLERACDLW------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHHI 243 (301)
T ss_dssp HHHHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHHH
T ss_pred hHHHHHHHHHHHHHhC------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHHH
Confidence 4567888888888872 1223577899999999995 9999999999999998 454 378888
Q ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHH
Q 010063 292 SLGSLFIK-EGKAVDAESVFSRILKI 316 (519)
Q Consensus 292 ~la~~~~~-~g~~~~A~~~~~~al~~ 316 (519)
..|..+.. .|++++|..++++++..
T Consensus 244 ~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 244 TYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 89999888 59999999999999985
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.97 E-value=0.0003 Score=54.91 Aligned_cols=128 Identities=15% Similarity=0.035 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCC
Q 010063 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (519)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (519)
.++..-...+...|.|+.|+.....++.+..... ....+.....++..+|.+++..|+|..|...|++++...+.+...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455566778889999999999999888865520 011245567788999999999999999999999999987643211
Q ss_pred -----------------CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 010063 410 -----------------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467 (519)
Q Consensus 410 -----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 467 (519)
+.+...+..+.++.||.+.|++++|+..++.. |.......+-..||..|
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence 11223467889999999999999999887642 12233344455666654
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.93 E-value=0.00011 Score=52.50 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 284 ADLVLPLFSLGSLFIKEGK---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
|..+..+..+|.+++..++ .++|..++++++++ +|....++..+|..++..|+|++|+.+++++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556788889999876665 79999999999996 6777789999999999999999999999998875
No 223
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.015 Score=55.10 Aligned_cols=231 Identities=13% Similarity=0.044 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhc
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (519)
..+...+..+..+. .|+++.|++.+-..-+. .....+.+....++..+...+...|+++...+.+.......
T Consensus 15 ~~~~~~~~~~~~l~-~~~~~~a~e~ll~lEK~----~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr--- 86 (445)
T 4b4t_P 15 QILKEEFPKIDSLA-QNDCNSALDQLLVLEKK----TRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH--- 86 (445)
T ss_dssp -------------C-HHHHHHHHHHHHHHHHH----HSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH----hhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh---
Confidence 33444444454443 36778887754322221 12244556667778888889999999998877665443322
Q ss_pred CCCchHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010063 196 KDDEPLLDAILLHMGSMYS-TLENYEKSMLVYQRVINVLESRYGKT---SILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 271 (519)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 271 (519)
+........ ......-+. .....+. ......+.......... ....+.....++.+|...|++.+|...+...
T Consensus 87 ~qlk~ai~~-~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l 163 (445)
T 4b4t_P 87 GQLKLSIQY-MIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCEL 163 (445)
T ss_dssp TTSHHHHHH-HHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhHHHHHH-HHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 222222222 122111121 1222111 11112222111111111 1235667788999999999999999999887
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHH
Q 010063 272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVE 350 (519)
Q Consensus 272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 350 (519)
..-. ....+.......+.....+|...+++.+|...+.++....... ..+|. ....+...|.++...++|.+|-.
T Consensus 164 ~~Et--~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~ 239 (445)
T 4b4t_P 164 QVET--YGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQ 239 (445)
T ss_dssp HHHH--CSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHH--HhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5432 1112334557788888999999999999999999986544332 23343 45567788999999999999999
Q ss_pred HHHHHHHHHHh
Q 010063 351 LYKKALRVIKD 361 (519)
Q Consensus 351 ~~~~al~~~~~ 361 (519)
+|.++......
T Consensus 240 ~y~e~~~~~~~ 250 (445)
T 4b4t_P 240 YLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhcccc
Confidence 99999887654
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.83 E-value=0.00057 Score=53.31 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCc-
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE- 199 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~- 199 (519)
+++.+..++..|.|+.|+-+...++.+..... ..........++..+|.+++..|+|..|...|++++...+.+....
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77888899999999999999999888754311 0112345678899999999999999999999999988776532221
Q ss_pred -----------------hHHHHHHHHHHHHHHccccHHHHHHHHHH
Q 010063 200 -----------------PLLDAILLHMGSMYSTLENYEKSMLVYQR 228 (519)
Q Consensus 200 -----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (519)
+.-.++.+.++.||...|++++|+..++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 11235678999999999999999998764
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.83 E-value=0.001 Score=51.53 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 284 ADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
+....+.+++|+++...+ +.++++.+++..++. +.| ....+++++|..+.+.|+|++|..+++.++++
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 346789999999999988 666999999998884 235 56788999999999999999999999999998
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.80 E-value=0.00018 Score=51.35 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 245 VTSLLGMAKVLGSIGR---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
...+..+|.+++..++ .++|..++++++++ +|....++..+|..+...|+|++|+.+++++++.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567778888876665 79999999999998 6788899999999999999999999999999874
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.72 E-value=0.0012 Score=51.23 Aligned_cols=83 Identities=13% Similarity=0.028 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHH
Q 010063 219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRGTESA-DLVLPLFSLG 294 (519)
Q Consensus 219 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la 294 (519)
...+.+.|.+.+.. + +....+.+++|+++...+ +.++++.+++..++. +.| ....+++++|
T Consensus 14 l~~~~~~y~~e~~~-----~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-----G---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHHT-----T---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-----C---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHH
Confidence 44455555555431 1 123678889999999988 677999999998875 224 5678999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHH
Q 010063 295 SLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~al~~ 316 (519)
..+++.|+|++|..++++++++
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhc
Confidence 9999999999999999999997
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.027 Score=53.31 Aligned_cols=218 Identities=12% Similarity=0.039 Sum_probs=134.0
Q ss_pred cCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010063 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (519)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (519)
.|+++.|++.+....+... .+.+.+....++..+...+...|+++...+++.-.. ...+.- +...........-
T Consensus 29 ~~~~~~a~e~ll~lEK~~r-~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls----kkr~ql-k~ai~~~V~~~~~ 102 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTR-QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS----KKHGQL-KLSIQYMIQKVME 102 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH----TTTTTS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhh-hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH----HHhhhh-HHHHHHHHHHHHH
Confidence 4677888876655444332 245555566667888888999999987766554221 111211 2111111111111
Q ss_pred Hh-hcCCHHHHHHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-ChhHH
Q 010063 255 LG-SIGRAKKAVEIYHRVITILELNRGTE---SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVG 329 (519)
Q Consensus 255 ~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 329 (519)
+. .....+. ......++......... ....+.....|+.+|...|++.+|...+.....- .++.. .....
T Consensus 103 ~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~E---t~~~~~~~~kv 177 (445)
T 4b4t_P 103 YLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE---TYGSMEMSEKI 177 (445)
T ss_dssp HHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCSSSCHHHHH
T ss_pred HHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---HHhcccHHHHH
Confidence 11 1222111 11112222211111111 1124566678999999999999999999887542 22322 23456
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 010063 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (519)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (519)
..+.....++...+++.+|...+.++....... .+.+......+...|.++...++|.+|-.+|.++.......
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~---~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKN---PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc---CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 778888999999999999999999986544432 34455667778889999999999999999999988765443
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.81 E-value=0.081 Score=39.36 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 285 DLVLPLFSLGSLFIKEGKAVD---AESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
....+.+++|+++....+... ++.+++..+. .+.| ..-..++.||..+++.|+|++|..+++..+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 456888999999999887766 5655555443 3335 56778999999999999999999999999998
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.75 E-value=0.063 Score=40.99 Aligned_cols=102 Identities=11% Similarity=0.025 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCh------HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063 377 IDLAELLHIVGRG------QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (519)
Q Consensus 377 ~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (519)
..........|+. ++-++.|++|+..............+..+...|.. ...++.++|.+.|+.++.+
T Consensus 17 ~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~------ 89 (161)
T 4h7y_A 17 LSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN------ 89 (161)
T ss_dssp HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH------
T ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH------
Confidence 4455556666887 77778888887755332222344566777777765 5669999999999999985
Q ss_pred CCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
|...+.++...|..-.++|+..+|.+.+.+++.+.
T Consensus 90 --hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 --CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp --CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 33348888899999999999999999999999843
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.41 E-value=0.039 Score=42.13 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHCCCH------HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 010063 331 AMCSLAHAKCANGNA------EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (519)
Q Consensus 331 ~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (519)
++..........|+. ++-++.|++|+....... .......+..+...|.. ...++.++|.+.|+.++.+.
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h- 90 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC- 90 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh-
Confidence 444445555555887 788888998887654321 23445566777777765 56699999999999999861
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
...+.++...|..-.++|+..+|...+.+++.+
T Consensus 91 -------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 91 -------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp -------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 122788888999999999999999999999983
No 232
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.33 E-value=0.04 Score=56.54 Aligned_cols=105 Identities=10% Similarity=-0.072 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcC
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (519)
.....++.+-..|.+.|+.++|..++.+..+...+...++ ..+|+.+...|...|++++|.++|++..+.
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------ 194 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFKELVYVLFMVKDA------ 194 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Confidence 3445688999999999999999999988765544433444 668999999999999999999999998653
Q ss_pred CCChhhHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHH
Q 010063 281 TESADLVLPLFSLGSLFIKEGKA-VDAESVFSRILKI 316 (519)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 316 (519)
.-.....+|+.+-..+.+.|+. ++|.++++++.+.
T Consensus 195 -G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 -GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp -TCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred -CCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 2233467888888899999984 7888999888763
No 233
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.30 E-value=0.07 Score=54.82 Aligned_cols=105 Identities=7% Similarity=-0.122 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Q 010063 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (519)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (519)
....+++.+-..|.+.|+.++|..++.+..+...+.. .....+|+.|...|.+.|+.++|.++|++..+.
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~----~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------ 194 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK----LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA------ 194 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT----TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC----CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Confidence 4566788999999999999999999988765433322 223678999999999999999999999998763
Q ss_pred CCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
Q 010063 323 ENDGRVGMAMCSLAHAKCANGN-AEEAVELYKKALRV 358 (519)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 358 (519)
.-.|+.. +|+.+...+++.|+ .++|.++++++.+.
T Consensus 195 G~~PDvv-TYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 GLTPDLL-SYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp TCCCCHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCcHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 2345544 78888889999998 57888999887654
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.29 E-value=0.099 Score=54.13 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=52.0
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 010063 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286 (519)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 286 (519)
..+...+...|.+++|+...+. +.. ........|++++|.+..+.. ..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------------~~~------~f~~~l~~~~~~~A~~~~~~~-------------~~ 680 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------------QDQ------KFELALKVGQLTLARDLLTDE-------------SA 680 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------------HHH------HHHHHHHHTCHHHHHHHHTTC-------------CC
T ss_pred HHHHHHHHhCCChHHheecCCC-------------cch------heehhhhcCCHHHHHHHHHhh-------------Cc
Confidence 4556667778888887765532 110 123345678998888774321 22
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010063 287 VLPLFSLGSLFIKEGKAVDAESVFSRI 313 (519)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (519)
...+..+|..+...|+++.|+..|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 467889999999999999999999886
No 235
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.067 Score=50.43 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 010063 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (519)
....++..+|..|...|++++|.+.|.++...+. ........+..+..++...+++..+..++.++......
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--- 200 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--- 200 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc---
Confidence 4456778899999999999999999999887542 22456677888889999999999999999999877654
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
++++..........|.++...++|.+|...|-++...
T Consensus 201 -~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 201 -GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp -CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 4556656666677788888999999999999887654
No 236
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.079 Score=49.94 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCch
Q 010063 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (519)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (519)
....|..+...|++++|.+.|.++.+.. .........+..+..++...+++..+..++.++....... ++..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~-------~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-~d~~ 205 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKA-------ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-GDWE 205 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHH-------TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-CCTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-CCHH
Confidence 5568899999999999999999987762 2245667788888899999999999999999998877553 3333
Q ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
.........|.++...++|.+|...|..+...
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 34455566788888999999999999887654
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.84 E-value=0.38 Score=35.79 Aligned_cols=69 Identities=13% Similarity=0.009 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHHHHHHhcCChHH---HHHHHHHHHhhhhhcCCCch-HHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 158 GIEEVAILDIIALGYVYIGDLKF---VQSLLDMMSGIVDSLKDDEP-LLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
++....+.+.+|+++....+... ++.+++.... .+.| .....++.+|..+++.|+|++|..+++..+++
T Consensus 31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP------KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34556788999999999887776 6666655433 2224 56678999999999999999999999999886
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.55 E-value=0.34 Score=50.04 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=17.1
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHH
Q 010063 205 ILLHMGSMYSTLENYEKSMLVYQRV 229 (519)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~a 229 (519)
.|..+|..+...|+++.|+..|.++
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3666777777777777777777654
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.16 E-value=0.26 Score=45.67 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCC-CCh-----------HHHHHHHHHHHHHHhcCChHHHHH
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGN-KGI-----------EEVAILDIIALGYVYIGDLKFVQS 183 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~ 183 (519)
..+..+...+......|+.+.|...+++++.+++.-+-.+. ..+ ....+...++..+...|++.+++.
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566777777777889999999999999987643211110 110 112344567778889999999999
Q ss_pred HHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063 184 LLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (519)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (519)
.+..+.... |..-.++..+..++...|+..+|+..|++.-......+|-+
T Consensus 193 ~l~~~~~~~-------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 193 ELEALTFEH-------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp HHHHHHHHS-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 998877654 44344577888899999999999999999988776655544
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.69 E-value=1.1 Score=45.05 Aligned_cols=123 Identities=12% Similarity=0.079 Sum_probs=81.2
Q ss_pred cCC-hHHHHHHHHHHHhhhhhcCCCchHHHHHHHHH---HHHHHccccHHHHHHHHHHHHHHHHHhc---CCCC------
Q 010063 175 IGD-LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM---GSMYSTLENYEKSMLVYQRVINVLESRY---GKTS------ 241 (519)
Q Consensus 175 ~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~------ 241 (519)
.|+ ++.|+.++++..... |.... +... +.......+--+|+....++++...... ...+
T Consensus 261 t~~~~~~a~~~le~L~~~~-------p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKD-------PIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHC-------GGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhC-------CchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 445 577888888765532 32221 2221 2122223345577888877775432111 1111
Q ss_pred -HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010063 242 -ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (519)
Q Consensus 242 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (519)
+.....+...+..+...|+++-|+.+.++|+.. .|....+|..|+.+|..+|+|+.|+-.+..+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122345666788888999999999999999987 5777899999999999999999999776654
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.61 E-value=2.3 Score=37.83 Aligned_cols=237 Identities=13% Similarity=0.073 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCC
Q 010063 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (519)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (519)
..+.+..++.-|...++|++|++++.. -+..+.+.|++..|.++..-.++.+.+..-+-
T Consensus 34 AHQ~~RTi~~Ry~~~k~y~eAidLL~~---------------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~ 92 (336)
T 3lpz_A 34 AAQETRLVAARYSKQGNWAAAVDILAS---------------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRV 92 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHH---------------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC
Confidence 344555666666777777777665543 33334444555555555444444444331111
Q ss_pred CHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHH-------
Q 010063 241 SILLVTSLLGMAKVLGSIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR------- 312 (519)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------- 312 (519)
+. .....+..++.....- ..=..+.++++....+. +.........+..+|..|++.+++.+|..+|--
T Consensus 93 ~~---~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~ 168 (336)
T 3lpz_A 93 DG---ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPE 168 (336)
T ss_dssp CH---HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHH
T ss_pred CH---HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHH
Confidence 11 2233344444433321 11245667777766653 222334456778899999999999999888621
Q ss_pred -HHHHHHHhcCCCChhHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHhhcc-C--------------CCCchHHHHH
Q 010063 313 -ILKIYTKVYGENDGRVGMAMCSLA-HAKCANGNAEEAVELYKKALRVIKDSNY-M--------------SLDDSIMENM 375 (519)
Q Consensus 313 -al~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~-~--------------~~~~~~~~~~ 375 (519)
..++.-+......+.....+...+ ..|...++...|...++.-.+...+... + -+..|.+.-+
T Consensus 169 ~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl 248 (336)
T 3lpz_A 169 VLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFI 248 (336)
T ss_dssp HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHH
Confidence 111111111112233333333333 4567889999999988877765533210 0 1123332212
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 010063 376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428 (519)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 428 (519)
.+...-+..+. ...|....+.+......+.+.....+..+|..|+..
T Consensus 249 --~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 249 --SMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp --HHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred --HHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 22223334443 345555555554444333225566777777777754
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.29 E-value=0.99 Score=41.76 Aligned_cols=103 Identities=11% Similarity=0.014 Sum_probs=75.6
Q ss_pred HccccHHHHHHHHHHHHHHHHHhcCCC---C-----------HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Q 010063 214 STLENYEKSMLVYQRVINVLESRYGKT---S-----------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (519)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~~~~---~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (519)
...|+.+.|...+.+|+.+++-.+-.+ . .....+...++..+...|++.+|+..+.+++..
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----- 200 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE----- 200 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 345677777777777776643211110 0 122345566788889999999999999998876
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC
Q 010063 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (519)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (519)
+|..-..+..+..++...|+..+|+..|++.......-+|.+
T Consensus 201 ---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 201 ---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp ---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 566667888899999999999999999999998877665544
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.17 E-value=1.3 Score=33.12 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCh---hHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhh
Q 010063 119 LELFNEVKSMIMMGNK---NDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (519)
Q Consensus 119 ~~l~~~~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (519)
+..++.|..+....+. .+++.+++..+.. ++ ...+.++.+|..+.+.|+|++|..+.+.+++.-
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~----------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 3366777777777654 4567776665543 34 578899999999999999999999999988764
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.58 Score=37.23 Aligned_cols=103 Identities=11% Similarity=0.075 Sum_probs=66.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (519)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (519)
......|+++.|.+..+.. +....|..+|......|+++-|+..|.++...
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-------------- 63 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF-------------- 63 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------------
T ss_pred HHHHhcCCHHHHHHHHHHh---------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------------
Confidence 3457889999998876542 22457889999999999999999999885432
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 271 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 271 (519)
..+..+|...|+.+.-...-+.+. .. +. ++....++...|++++++++|.+.
T Consensus 64 -~~L~~Ly~~tg~~e~L~kla~iA~----~~---g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 -DKLSFLYLVTGDVNKLSKMQNIAQ----TR---ED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp -HHHHHHHHHHTCHHHHHHHHHHHH----HT---TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -HHHHHHHHHhCCHHHHHHHHHHHH----HC---cc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 234445566676654333333222 11 11 122245566789999888888664
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.94 E-value=2 Score=43.23 Aligned_cols=127 Identities=8% Similarity=-0.058 Sum_probs=81.0
Q ss_pred HHcccc-HHHHHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCC---CC---
Q 010063 213 YSTLEN-YEKSMLVYQRVINVLESRYGKTSILLVT--SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT---ES--- 283 (519)
Q Consensus 213 ~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~--- 283 (519)
....|+ ++.|+.++++.... .|.... ....++.......+--+|+....++++-....... .+
T Consensus 258 ~~~t~~~~~~a~~~le~L~~~--------~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 258 IAITPSLVDFTIDYLKGLTKK--------DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHTCGGGHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HcccccHHHHHHHHHHHHHhh--------CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 334555 57788888875543 121111 11112222222344567888888877543221110 11
Q ss_pred ----hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 010063 284 ----ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (519)
Q Consensus 284 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (519)
+.....+..-+..+...|+++-|+.+.++|+.. .|....+|..|+.+|..+|+|+.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112334555677788899999999999999986 4677779999999999999999999877765
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.82 E-value=1 Score=35.76 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=66.4
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHH
Q 010063 297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376 (519)
Q Consensus 297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 376 (519)
....|+++.|.+..+.. + ....|..||......|+++-|+.+|+++-+.
T Consensus 15 AL~lg~l~~A~e~a~~l----------~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------------------ 63 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL----------N---DSITWERLIQEALAQGNASLAEMIYQTQHSF------------------ 63 (177)
T ss_dssp HHHTTCHHHHHHHHHHH----------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------------------
T ss_pred HHhcCCHHHHHHHHHHh----------C---CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH------------------
Confidence 35689999988876543 1 1346889999999999999999999885443
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 010063 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (519)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (519)
..+.-+|...|+.+.-....+.+.. . ... +.-..++..+|++++++++|.+.
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~----~---g~~------n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQT----R---EDF------GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH----T---TCH------HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH----C---ccH------HHHHHHHHHcCCHHHHHHHHHHC
Confidence 3355566677776554443333321 1 111 12234566789999998888654
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.73 E-value=0.91 Score=33.93 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 158 GIEEVAILDIIALGYVYIGDLK---FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
+...+.+.+.+|+++....+.+ +++.+++...... .......++.+|..+++.|+|++|..+.+..+++
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~------~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3344577788888888876654 5666666655421 2345677999999999999999999999988875
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.62 E-value=1.8 Score=32.84 Aligned_cols=68 Identities=10% Similarity=0.020 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Q 010063 159 IEEVAILDIIALGYVYIGDLK---FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (519)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (519)
.....+.+++|+++....+.+ +++.+++...... + ......++.+|..+++.|+|++|..+.+..++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~----~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA----E--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC----C--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----c--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345667788888888877665 4566666554421 1 235567999999999999999999999998885
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.55 E-value=3.7 Score=36.26 Aligned_cols=150 Identities=11% Similarity=0.012 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHhhccCCCC
Q 010063 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKALRVIKDSNYMSLD 368 (519)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~ 368 (519)
+..-+..+.+.|++..|.++..-.++.+.+.. .+........+..++.....-+ .=..+.+++++...+.......
T Consensus 56 L~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~G 132 (312)
T 2wpv_A 56 ISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE---VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFG 132 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCC
Confidence 33344455566777777776666666666542 1112224444555554432211 2356777788777654211112
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHH----HH----H---HHHhhCCCChhHHHHHHHHH-HHHHhccCHHHHHH
Q 010063 369 DSIMENMRIDLAELLHIVGRGQEGRELLEEC----LL----I---TEKYKGKEHPSFVTHLLNLA-ASYSRSKNFVEAER 436 (519)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~----~---~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~ 436 (519)
+ ...+..+|..|...|++.+|..+|-.+ .+ + +.+......+.....+...+ ..|...|+...|..
T Consensus 133 d---p~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~ 209 (312)
T 2wpv_A 133 D---PYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHE 209 (312)
T ss_dssp C---HHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHH
T ss_pred C---HHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3 345677999999999999999877311 11 1 11111013344444443333 34678899999999
Q ss_pred HHHHHHHHH
Q 010063 437 LLRICLDIM 445 (519)
Q Consensus 437 ~~~~al~~~ 445 (519)
.+..-....
T Consensus 210 ~~~~f~~~~ 218 (312)
T 2wpv_A 210 SKDIFLERF 218 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988776554
No 250
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.40 E-value=0.8 Score=43.40 Aligned_cols=143 Identities=10% Similarity=0.092 Sum_probs=61.0
Q ss_pred HHccccHHHHHHHHHHHH--HHHHHhc-CCCCHHHHHHHHHHHHHHhhcCCHHHHHHHH-------HHHHHHHHHh-cCC
Q 010063 213 YSTLENYEKSMLVYQRVI--NVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIY-------HRVITILELN-RGT 281 (519)
Q Consensus 213 ~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~~ 281 (519)
+...+++++|..+-...+ +...... ..-+...+.+|+..+.++...|+........ ...+...+.. ...
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 456788888888776554 2221110 0112345667777777777777766543221 1222222222 222
Q ss_pred CChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
+....+..++.+-+.|...+.+++|..+..++.-. .. ...+...+.-++.+|.++..+++|.+|.+++..|+..
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44556778888999999999999999999887410 00 0112345677888999999999999999999998865
No 251
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.36 E-value=0.77 Score=43.77 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010063 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315 (519)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (519)
..++..+|.+......+..|..+|.+|..+ .|.....++.||.+....|+.-+|+-+|.+++.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 346778999999999999999999999998 678889999999999999999999999999876
No 252
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.12 E-value=4.2 Score=38.61 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=61.2
Q ss_pred HHhhcCCHHHHHHHHHHHH--HHHHHhc-CCCChhhHHHHHHHHHHHHhCCCHHHHHHHH-------HHHHHHHHHhcC-
Q 010063 254 VLGSIGRAKKAVEIYHRVI--TILELNR-GTESADLVLPLFSLGSLFIKEGKAVDAESVF-------SRILKIYTKVYG- 322 (519)
Q Consensus 254 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~~~- 322 (519)
.+...+++++|.++-...+ +...... ..-+...+.+|+..+.++...|+........ ...+..++....
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456788888888776655 2222110 0113445667777788887777766543221 122233333222
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
.+....+..++.+-..|...+.++.|..+..++. +.. ....+...+..++.+|.++.-+++|.+|.+++..|+..
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~---~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPH---TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCT---TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCc---ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2334466678888999999999999999988863 111 11234556777889999999999999999999998754
No 253
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.06 E-value=2.4 Score=33.11 Aligned_cols=97 Identities=14% Similarity=0.033 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH----------H
Q 010063 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM----------T 446 (519)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------~ 446 (519)
..++.++.-.|.+..++-++.. ..+..+.+.-+.||...+++.+|+..++..++-. -
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred hhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 3467778888998888766542 2234455566889999999999999999988310 0
Q ss_pred HhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010063 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (519)
Q Consensus 447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (519)
+..--+..+.-..+..+|.++.+.|+.++|+.++......
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 0100111222334677899999999999999999887653
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.32 E-value=12 Score=38.75 Aligned_cols=199 Identities=17% Similarity=0.150 Sum_probs=108.1
Q ss_pred hcCChHHHHHHHHHHHhhhhhcCCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Q 010063 174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK--TSILLVTSLLGM 251 (519)
Q Consensus 174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~l 251 (519)
..|+.++++..+...+.- ....+.....-+++.+|.++...++ ++..++...+.-....-+. .......+...+
T Consensus 386 h~g~~~~gl~~L~~yL~~--~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPG--SRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp TSSCTTTHHHHHTTTSTT--SCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHhccc--cCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 467777776666543321 0012223355667888888776664 6777776655432100000 012333455678
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 010063 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESAD-LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (519)
Q Consensus 252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (519)
|.++...++- ++.+.+...+.- ++.. ...+-..+|.++...|+-+-...++..+.+ ..+..+.
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~d-------d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-------~~~e~vr- 525 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYN-------DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-------TQHGNIT- 525 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHT-------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-------CSCHHHH-
T ss_pred HHHhcCCCCH-HHHHHHHHHHhc-------CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-------cCcHHHH-
Confidence 8888777763 455555555431 2221 124556788888889987666666555543 1222222
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (519)
-...+|..+...|+.+.+....+.... ..++......-..+|..|...|+...-..++..+.
T Consensus 526 R~aalgLGll~~g~~e~~~~li~~L~~--------~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 526 RGLAVGLALINYGRQELADDLITKMLA--------SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HHHHHHHHHHTTTCGGGGHHHHHHHHH--------CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 224455555567777766665554332 23333333344667888889999654444666554
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.19 E-value=3.9 Score=31.00 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHHHhCCCHH---HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 284 ADLVLPLFSLGSLFIKEGKAV---DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
.....+.+++|+++....+.. +++.+++..+.. .....-..++.||..+.+.|+|++|..+.+..+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345788899999999887654 566666665552 22256678899999999999999999999999987
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.56 E-value=12 Score=40.27 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-------------HHhc--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 010063 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIY-------------TKVY--GENDGRVGMAMCSLAHAKCANGNAEEAVELY 352 (519)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (519)
...+.+|.++...|++++|..+|+++-.-. .... .........-|..+..++...|.++.++++.
T Consensus 843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa 922 (1139)
T 4fhn_B 843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345789999999999999999998873210 0000 0001112345677888899999999999999
Q ss_pred HHHHHHHHhhccCCCCch-HHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 010063 353 KKALRVIKDSNYMSLDDS-IMENMRIDLAELLHIVGRGQEGRELLEE 398 (519)
Q Consensus 353 ~~al~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (519)
+.|++.. .++++ .....+.++-..+...|+|++|...+..
T Consensus 923 ~lAi~~~------~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 923 LLADASK------ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHC------CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHhc------cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 9998862 23333 3344678888889999999999877643
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.54 E-value=8.7 Score=33.90 Aligned_cols=145 Identities=11% Similarity=-0.033 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
+...+.+.......|+|=+|.+.++.......+ .....+..++++.-+..+...|++..|..+....++..+..+.
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~----~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~ 88 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVR----SKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV 88 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 334556666677788888888877776655443 2224455556666777777788888877776666665544222
Q ss_pred CchHHHHHHHHHHHHHHccccHH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010063 198 DEPLLDAILLHMGSMYSTLENYE-KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH 269 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 269 (519)
.. . ......+..++.....-+ .=..+..+++....+..+ ........+..+|..|...|++.+|..+|-
T Consensus 89 ~~-~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 89 KV-D-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CC-S-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC-C-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 11 1 112444555554422111 224556666665544321 111224566778888888888888777764
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.41 E-value=3.4 Score=44.47 Aligned_cols=106 Identities=12% Similarity=0.035 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-------------cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSN-------------YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (519)
..+.+|.++...|++++|..+|+++-....... ...+........|..+..++.+.|.++.+++..+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 347789999999999999999988632111000 0011111123456778888999999999999999
Q ss_pred HHHHHHHHhhCCCChhH-HHHHHHHHHHHHhccCHHHHHHHHHH
Q 010063 398 ECLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRI 440 (519)
Q Consensus 398 ~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (519)
.|++.. +++.+.. ...+.++=..+...|+|++|...+..
T Consensus 924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 998753 2233332 33677788888999999999877643
No 259
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.16 E-value=5.6 Score=31.09 Aligned_cols=96 Identities=17% Similarity=0.095 Sum_probs=69.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH----------HH
Q 010063 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY----------TK 319 (519)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------~~ 319 (519)
.++.+++..|+|..|+-++.. ...+.+.+.-+.+|....++..|+..++..++-- -+
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred hhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 467778889999888766532 2346677778889999999999999999988310 00
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
.+--+..+.-..+..+|.++...|+-+||+.++......
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 111112233446788999999999999999999987664
No 260
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=88.79 E-value=1.3 Score=42.12 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 010063 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (519)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (519)
.++..+|.+......+..|..+|.+|..+. |.....++.+|.+....|+.-+|+-+|-+++.. ..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-------~~ 217 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-------KF 217 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-------SB
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-------CC
Confidence 467789999999999999999999999873 555788999999999999999999999998854 12
Q ss_pred hhhHHHHHHHHHHHH
Q 010063 284 ADLVLPLFSLGSLFI 298 (519)
Q Consensus 284 ~~~~~~~~~la~~~~ 298 (519)
| ...+..++...+.
T Consensus 218 P-f~~a~~nL~~~f~ 231 (497)
T 1ya0_A 218 P-FPAASTNLQKALS 231 (497)
T ss_dssp C-CHHHHHHHHHHHH
T ss_pred C-ChhHHHHHHHHHH
Confidence 2 3555666665554
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.17 E-value=14 Score=32.94 Aligned_cols=191 Identities=7% Similarity=-0.065 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCCh---hHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 121 LFNEVKSMIMMGNK---NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 121 l~~~~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
.+.+.......|+| =+|.+.++.......+ .....+..++++.-+..+...|++..|.++....++..+..+.
T Consensus 15 ~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~----~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~ 90 (336)
T 3lpz_A 15 IIARLQRRIAEGQPEEQYEAAQETRLVAARYSK----QGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQ 90 (336)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCccccHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 44555556667777 6666666655544333 2334445556666677777778877777766665555544221
Q ss_pred CchHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHH------
Q 010063 198 DEPLLDAILLHMGSMYSTLENY-EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR------ 270 (519)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------ 270 (519)
.... .....+..++.....- ..=..+..+++.-..+. +.........+..+|..|...+++.+|..++--
T Consensus 91 ~~~~--~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~ 167 (336)
T 3lpz_A 91 RVDG--ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESP 167 (336)
T ss_dssp CCCH--HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHH
T ss_pred CCCH--HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchH
Confidence 1111 2244455555443321 12244566666655542 221122245667889999999999999888621
Q ss_pred --HHHHHHHhcCCCChhhHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHH
Q 010063 271 --VITILELNRGTESADLVLPLFS-LGSLFIKEGKAVDAESVFSRILKIYT 318 (519)
Q Consensus 271 --al~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~ 318 (519)
..++.-+......+.....+.. ....|...++...|...+..-.+...
T Consensus 168 ~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~ 218 (336)
T 3lpz_A 168 EVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALV 218 (336)
T ss_dssp HHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 1111111111122333333333 33456778999999998877776553
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.75 E-value=28 Score=36.03 Aligned_cols=266 Identities=14% Similarity=0.120 Sum_probs=133.2
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC---chHHHHH
Q 010063 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD---EPLLDAI 205 (519)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~ 205 (519)
...|+.++++..+.+-+.. ..........-+++.+|.++...+ +++..++...+.-......+ ......+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~-----~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gA 457 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPG-----SRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGA 457 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTT-----SCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccc-----cCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHH
Confidence 4456666665555443220 001112234556777777765554 46777666655432110011 1222234
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (519)
-..||.++.-.++ +++...+...+. .++.. ...+-..+|.++...|+-+-...++..+.+. .+
T Consensus 458 aLGLGla~~GS~~-eev~e~L~~~L~-------dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-------~~- 521 (963)
T 4ady_A 458 SLGIGLAAMGSAN-IEVYEALKEVLY-------NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-------QH- 521 (963)
T ss_dssp HHHHHHHSTTCCC-HHHHHHHHHHHH-------TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-------SC-
T ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHh-------cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-------Cc-
Confidence 5577877776665 345555554443 12222 2245667888899999877666665554431 12
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 010063 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (519)
+...-...+|..+...|+.+.+..+.+..... .+|. ...+...+|..|...|+...-..++..+..
T Consensus 522 e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~------ 588 (963)
T 4ady_A 522 GNITRGLAVGLALINYGRQELADDLITKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS------ 588 (963)
T ss_dssp HHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc------
Confidence 22333344555556778877777666554431 2333 223455678889999997555446665543
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 010063 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRICL 442 (519)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (519)
..++.....+ -+|..+...|+.+.+...+.. ..+ ..++.+ ..+-..+|.+....++ .+++..+.+..
T Consensus 589 --d~~d~VRraA--ViaLGlI~~g~~e~v~rlv~~----L~~---~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~ 656 (963)
T 4ady_A 589 --DSNDDVRRAA--VIALGFVLLRDYTTVPRIVQL----LSK---SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLT 656 (963)
T ss_dssp --CSCHHHHHHH--HHHHHHHTSSSCSSHHHHTTT----GGG---CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHH
T ss_pred --CCcHHHHHHH--HHHHHhhccCCHHHHHHHHHH----HHh---cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHc
Confidence 1222222223 333344445555433333321 111 122322 2233345554444443 66777766654
No 263
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=87.25 E-value=12 Score=31.07 Aligned_cols=181 Identities=8% Similarity=-0.043 Sum_probs=101.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCCch
Q 010063 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDDS 370 (519)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 370 (519)
.++.+....++|++...+.+++.+.+.....+ -...-.+.++..|-. .|....+...+.. .++.. ..+..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~e---Lt~EERnLLSvAYKNvig~rR~swRiiss----iEqke--k~~~~ 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSE---FDDEERHLLTLCIKHKISDYRTMTSQVLQ----EQTKQ--LNNDE 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHS--CSCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCC---CCHHHHHHHHHHHHHhhcccHHHHHHHHH----HHHHH--cCCHH
Confidence 57888888999999999999988732111111 111122223333321 1222223222222 11110 01111
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHHHH
Q 010063 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-----RSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~ 445 (519)
. ..+..-|... =-.+=.......+.+..+.+-+........+-..|..|. ..|+.+.|...|++|.++.
T Consensus 82 ~-----~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA 155 (227)
T 2o8p_A 82 L-----VKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLL 155 (227)
T ss_dssp H-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 1 1122222111 112223445566666555443332122223334455443 4577899999999999999
Q ss_pred HHhcCCCCcchhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHH
Q 010063 446 TKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 487 (519)
.+.+.|.||-......+.+..|+ -+++.++|....++|+++.
T Consensus 156 ~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 156 CEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 98788899988887788877776 4799999999999998865
No 264
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=86.95 E-value=5.5 Score=27.21 Aligned_cols=40 Identities=5% Similarity=0.008 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 010063 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN 153 (519)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (519)
.......++..|...-..|+|++|+.+|..+++.+.....
T Consensus 12 ~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk 51 (86)
T 4a5x_A 12 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLK 51 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3345556888888889999999999999999998877653
No 265
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=86.58 E-value=14 Score=31.39 Aligned_cols=185 Identities=13% Similarity=0.043 Sum_probs=96.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG 326 (519)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (519)
+..++.+....++|++...+.+++.+. +........-.+.|..+|-. .|....+.+.+... +.... +....
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~-----~~~~eLt~EERnLLSvaYKNvig~rR~swRiissi-eqke~--~k~~~ 82 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNS-----LGSEELTVEERNLLSVAYKNVIGARRASWRIISSI-EQKEE--SRGNE 82 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT-----CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--TTTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcc-----CCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHH-HHHhh--ccCcH
Confidence 446788888899999999999998774 10012233334444444432 12222222222221 11111 00111
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC-CCCchHHHHHHHHHHHHHHHc-----C-----ChHHHHHH
Q 010063 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-SLDDSIMENMRIDLAELLHIV-----G-----RGQEGREL 395 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 395 (519)
. ...+..-|.. .=-++=...+...+.+..+..-. ..+....+..+-..|..|.-. | -.+.|...
T Consensus 83 ~----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~a 157 (260)
T 1o9d_A 83 E----HVNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTA 157 (260)
T ss_dssp H----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1 1111111111 11122334445555544432100 111122222223344444321 2 13578889
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHH
Q 010063 396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIM 445 (519)
Q Consensus 396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 445 (519)
|++|.++....+.+.||.......+.+..|.. .++.++|..+.+++.+-.
T Consensus 158 Y~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 158 YKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 99999999888889999888887888777665 799999999888877643
No 266
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.21 E-value=9.3 Score=35.21 Aligned_cols=108 Identities=13% Similarity=-0.051 Sum_probs=74.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhhCC---------CChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcC
Q 010063 380 AELLHIVGRGQEGRELLEECLLITEKYKGK---------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (519)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (519)
..+.....+.++|.+++++......+..+. .......+...++..|...|+.++|..+++++-.......+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 345556778899999888764433322211 11234566778899999999999999999999888777544
Q ss_pred CCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.+.......+...+..|...+++..+....-.++...
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 4433455556667788888899888777666665543
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.34 E-value=10 Score=32.35 Aligned_cols=124 Identities=12% Similarity=0.035 Sum_probs=77.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHH
Q 010063 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (519)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (519)
..+++.|+.++|+...+..++. .|.++.....+...+.-.|+|+.|.+-++.+.++... ....+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~----------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~----~~~~a~~ 70 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA----------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE----YLPGASQ 70 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG----GHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh----------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch----hhHHHHH
Confidence 4567889999999999888876 7778888888889999999999999999888776521 1111111
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063 206 LLHMGSMYSTLENYEKSMLVYQRVINVL--ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (519)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (519)
|..+-. |+..=.+.+.-. ....+. .+. ......-+......|+.++|...-.++.+..
T Consensus 71 yr~lI~----------aE~~R~~vfaG~~~P~~~g~-~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 71 LRHLVK----------AAQARKDFAQGAATAKVLGE-NEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp HHHHHH----------HHHHHHHHTTSCCCEECCCS-CHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHH----------HHHHHHHHHcCCCCCCCCCC-CHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 221111 111111111100 000111 122 2233344666677899999999999998874
No 268
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=84.47 E-value=18 Score=30.75 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh-cCChHHHHHHHHHHHHHH
Q 010063 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~ 487 (519)
.+.|...|++|.++....+.|.||-......+.+..|+. +++.++|..+.+++++-.
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 357889999999999888899999888888888888776 799999998888777644
No 269
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.43 E-value=27 Score=32.06 Aligned_cols=107 Identities=10% Similarity=-0.022 Sum_probs=75.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhhhhc----------CCCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcC
Q 010063 169 ALGYVYIGDLKFVQSLLDMMSGIVDSL----------KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 238 (519)
Q Consensus 169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 238 (519)
..+.....+.++|.++++......... .........+...++..|...|+.++|..+++++-.......+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 334556788999999988764433211 0111223445677899999999999999999999888777655
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 010063 239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (519)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (519)
.+.......+...+..|...+++..+....-..+...
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 5555666777777888888999988776666665543
No 270
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=82.66 E-value=12 Score=27.33 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY 172 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (519)
.....++..|...-..|+|++|+.+|..+++.+.......+..+..-..+.....-|
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eY 72 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY 72 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 344457777778888999999999999999988776543334444444444443333
No 271
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=82.44 E-value=20 Score=29.70 Aligned_cols=181 Identities=11% Similarity=0.017 Sum_probs=99.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHhhhhhcCCCchH
Q 010063 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (519)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (519)
..++..-+.++|++......++.+..... +. .-...-.+.++.+|-. .|....+.+.+....+ ....+ ..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~---~~--eLt~EERnLLSvAYKNvig~rR~swRiissiEq---kek~~-~~ 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFE---NS--EFDDEERHLLTLCIKHKISDYRTMTSQVLQEQT---KQLNN-DE 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCSC-HH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhcc---CC--CCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHH---HHcCC-HH
Confidence 46677788999999999999887721110 11 1112222334444422 2333334333333221 11111 11
Q ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHHH
Q 010063 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-----SIGRAKKAVEIYHRVITILE 276 (519)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~ 276 (519)
...+..-|... =-.+=.......+.+....+-+.....+-.+-..|..|. ..|+.+.|...|+.|.++..
T Consensus 82 ----~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~ 156 (227)
T 2o8p_A 82 ----LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLC 156 (227)
T ss_dssp ----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 11122222111 112333455566666655544432222223333444443 35678999999999999998
Q ss_pred HhcCCCChhhHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHH
Q 010063 277 LNRGTESADLVLPLFSLGSLF-IKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~ 317 (519)
...++.+|.......|.+..| .-+++.++|..+.++++.+.
T Consensus 157 ~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 157 EHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 766777776666555665554 46899999999999998764
No 272
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=82.15 E-value=21 Score=29.80 Aligned_cols=60 Identities=18% Similarity=0.120 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHh
Q 010063 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIREIA 490 (519)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~ 490 (519)
.+.|...|++|.++....+.|.||-......+.+..|+ -.++.++|....++|++-.-.-
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~e 209 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMAD 209 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 46788999999999988899999998888888888777 4699999999999888755443
No 273
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=80.63 E-value=11 Score=25.52 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN 153 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (519)
.....+...|...-..|++++|+.+|.++++.+.....
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk 54 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVS 54 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 44455778888889999999999999999998777643
No 274
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=80.39 E-value=26 Score=29.71 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHH
Q 010063 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 447 (519)
.+.|...|++|.++....+.+.||.......+.+..|.. .++.++|..+.++|.+-.-.
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~ 231 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 231 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 367889999999999888889999888888888777665 79999999998888775533
No 275
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=78.84 E-value=28 Score=29.12 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHH
Q 010063 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 447 (519)
.+.|...|++|.++....+.+.||.......+.+..|.. .++.++|..+.+++.+-.-.
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 357889999999999888889999888877787777665 79999999999888875544
No 276
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=78.10 E-value=30 Score=29.13 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHH
Q 010063 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 447 (519)
.+.|...|++|.++....+.+.||.......+.+..|.. .++.++|..+.++|.+-...
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~ 206 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIA 206 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999888889999888877888777655 79999999998888775543
No 277
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=77.92 E-value=32 Score=29.30 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHH
Q 010063 389 GQEGRELLEECLLITEKYK--GKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDI 444 (519)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 444 (519)
.+.|...|++|.++....+ .+.||.......+.+..|. -.++.++|..+.++|.+-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4678899999999998877 8889988888888887776 579999999999998875
No 278
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=77.86 E-value=15 Score=25.50 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDI 167 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 167 (519)
....++..|...-..|+|++|+.+|..+++.+....... .++.....+..
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e-~~~~~k~~l~~ 63 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGT-KESSKRCVLRT 63 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 444577788888999999999999999999987765333 23444444433
No 279
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=77.81 E-value=6.1 Score=33.58 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCCcchhHHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Q 010063 431 FVEAERLLRICLDIMTKTV--GPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYI 486 (519)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~ 486 (519)
.+.|...|++|.++..+.+ .|.||-......+.+..|+. +++.++|....++|++-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4678899999999998888 88999888888888888774 79999999999999875
No 280
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=74.66 E-value=17 Score=24.55 Aligned_cols=37 Identities=16% Similarity=0.043 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN 153 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (519)
....++..|...-..|+|++|+.+|.++++.+.....
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk 46 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIV 46 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 4445778888889999999999999999998877653
No 281
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=74.49 E-value=17 Score=24.50 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 010063 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEA 147 (519)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 147 (519)
...+.++..+..+++.|+|.+|..+++++...
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 45677999999999999999999999998865
No 282
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.23 E-value=70 Score=31.47 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=77.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHH
Q 010063 336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415 (519)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 415 (519)
+.......+.+.|...+....... .-+..........++.-+...+...++...+.+... ........
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~------~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 288 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQ------QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM------RSQSTSLI 288 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH------TCCCHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhcc------CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc------cCCChHHH
Confidence 333444557888888877654421 123333344445555555556645667777765432 11223322
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
. ...+ .....|+++.|..+++..-. .........+.+|.++...|+.++|..+|+++..
T Consensus 289 e--~~~r-~Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 289 E--RRVR-MALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp H--HHHH-HHHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H--HHHH-HHHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2 2223 33456999999998865322 2234566788999999999999999999998865
No 283
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=73.62 E-value=17 Score=24.14 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 010063 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN 153 (519)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (519)
+..-+..|+.+...|+|+.|+.+|+.+++...+.+.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~ 47 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLY 47 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999999999998777653
No 284
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=73.16 E-value=40 Score=28.16 Aligned_cols=184 Identities=15% Similarity=0.039 Sum_probs=98.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 010063 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG 326 (519)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (519)
+..+|.+....++|++...+.+++.+. +......-.+.|..+|-. .|....+...+....+.-+...+....
T Consensus 11 ~v~~AklaeqaeRyddM~~~mk~v~~~-------~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~ 83 (236)
T 3iqu_A 11 LIQKAKLAEQAERYEDMAAFMKGAVEK-------GEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKG 83 (236)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-------CCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHH
Confidence 345678888899999999999888764 223333444445555433 122223333322211110000111111
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC-CCCchHHHHHHHHHHHHHHH-----cCC-----hHHHHHH
Q 010063 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-SLDDSIMENMRIDLAELLHI-----VGR-----GQEGREL 395 (519)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~la~~~~~-----~g~-----~~~A~~~ 395 (519)
....-+... + -.+=...+...+.+.....-. ..++......+-..|..|.- .|+ .+.|...
T Consensus 84 ~~i~~yr~k--i------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~a 155 (236)
T 3iqu_A 84 PEVREYREK--V------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSA 155 (236)
T ss_dssp SHHHHHHHH--H------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHH--H------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHH
Confidence 122111110 0 012223344444444332000 11122222223334554432 343 4678899
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHH
Q 010063 396 LEECLLITEKYKGKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIMT 446 (519)
Q Consensus 396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 446 (519)
|++|.++....+.+.||.......+.+..|. -.++.++|..+.++|.+-..
T Consensus 156 Y~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai 207 (236)
T 3iqu_A 156 YQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAM 207 (236)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999988888999988887788877766 56999999999888877543
No 285
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.45 E-value=48 Score=28.35 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=75.8
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCchHHHHHH
Q 010063 297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376 (519)
Q Consensus 297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 376 (519)
....|+.++|+......++ ..|..+.....+..+++-.|+++.|..-++.+.++ .++....+..|
T Consensus 7 ll~~g~L~~al~~~~~~VR--------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l-------~p~~~~~a~~y 71 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-------FPEYLPGASQL 71 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CGGGHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHH--------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CchhhHHHHHH
Confidence 4567999999999988887 56777778888899999999999999999988877 23333333232
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH--HHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 010063 377 IDLAELLHIVGRGQEGRELLEECLLI--TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (519)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (519)
..+..+-... .+.+.- .....+ ..+. ......-+......|+.++|..+-.++++..
T Consensus 72 r~lI~aE~~R----------~~vfaG~~~P~~~g-~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 72 RHLVKAAQAR----------KDFAQGAATAKVLG-ENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp HHHHHHHHHH----------HHHTTSCCCEECCC-SCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH----------HHHHcCCCCCCCCC-CCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 2222211100 000000 000011 1222 2233344556677899999999999998854
No 286
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=70.98 E-value=45 Score=27.85 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhcC
Q 010063 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIAFG 492 (519)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~ 492 (519)
.+.|...|++|.++....+.|.||-......+.+..|+. .|+.++|....+++++-.-..++
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~eld 208 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELD 208 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh
Confidence 357889999999999888899999888888888887776 79999999999998876555443
No 287
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=70.79 E-value=19 Score=24.27 Aligned_cols=29 Identities=41% Similarity=0.478 Sum_probs=22.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 333 CSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
...|.-.-..|++++|+.+|.++++.+..
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33445556789999999999999988665
No 288
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=70.60 E-value=49 Score=28.11 Aligned_cols=57 Identities=11% Similarity=0.122 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHH
Q 010063 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMT 446 (519)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 446 (519)
.+.|...|++|.++. ..+.+.||.......+.+..|.. .++.++|..+.+++.+-.-
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai 229 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAI 229 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 357888999999999 77888999888877888777665 7999999999998887543
No 289
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=69.75 E-value=15 Score=25.10 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
.+..+...+..+...|+|++|+++.+++.....+
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 5566778899999999999999999999877655
No 290
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=67.58 E-value=20 Score=24.49 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhh
Q 010063 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (519)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (519)
-..+..+...+..+...|+|++|+++.+++.....+..
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAm 49 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAM 49 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 34456667889999999999999999999987665543
No 291
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=67.09 E-value=27 Score=23.76 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
.+...|.-.-..|++++|+.+|..+++.+...
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~a 49 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGIDLLLQV 49 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34445556678899999999999999887654
No 292
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=66.34 E-value=58 Score=27.39 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHh
Q 010063 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIA 490 (519)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~ 490 (519)
.+.|...|++|.++....+.|.||-......+.+..|+. +++.++|....++|++-.-.-
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~e 207 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAE 207 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 367889999999999888899999988888888887776 799999999999988765443
No 293
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=65.11 E-value=64 Score=27.37 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHh
Q 010063 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIA 490 (519)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~ 490 (519)
.+.|...|++|.++....+.|.||-......+.+..|+. +++.++|....++|++-.-.-
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~e 232 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAE 232 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 367889999999999888899999988888888888776 799999999999988765443
No 294
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=65.05 E-value=29 Score=23.44 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (519)
....++..|...-..|++++|+.+|..+++.+....
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~ 47 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLAL 47 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 444567777788889999999999999999877654
No 295
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.60 E-value=43 Score=26.10 Aligned_cols=82 Identities=12% Similarity=0.092 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC
Q 010063 393 RELLEECLLITEKY-KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 471 (519)
Q Consensus 393 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 471 (519)
..++++++..+... .-.+++....++...+... ++ +.+.|..... + .-....+..|...|..+...|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~---~---~IG~~~AlfY~~wA~~lE~~~ 110 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHN---Q---GIGVSLAQFYISWAEEYEARE 110 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHH---T---TSSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHH---C---CcchhhHHHHHHHHHHHHHcC
Confidence 44666666654221 1135677777887777653 33 5556665444 1 122445667788899999999
Q ss_pred ChHHHHHHHHHHHHH
Q 010063 472 RDKEAEKLVLEALYI 486 (519)
Q Consensus 472 ~~~~A~~~~~~a~~~ 486 (519)
++.+|.+.|+..++.
T Consensus 111 ~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 111 NFRKADAIFQEGIQQ 125 (164)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999873
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=63.16 E-value=63 Score=26.67 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhc
Q 010063 392 GRELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 470 (519)
Q Consensus 392 A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 470 (519)
=..++++++..+.... -.+++....++...+.. .+++...|.-... +- -....+..|...|..+...
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~---~~---IG~~~AlfYe~wA~~lE~~ 163 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAH---HH---IGQESSIFYEEYANYFESR 163 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHH---TT---CSTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHH---CC---cchhHHHHHHHHHHHHHHc
Confidence 3567777776653321 13567777777777663 1355566665544 11 2234566778889999999
Q ss_pred CChHHHHHHHHHHHHH
Q 010063 471 NRDKEAEKLVLEALYI 486 (519)
Q Consensus 471 g~~~~A~~~~~~a~~~ 486 (519)
|++.+|...|+..++.
T Consensus 164 g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 164 GLFQKADEVYQKGKRM 179 (223)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999874
No 297
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=62.97 E-value=92 Score=28.46 Aligned_cols=73 Identities=22% Similarity=0.249 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 287 VLPLFSLGSLFIKEG--KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 287 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
..++.+||.+-.-.- ....++.+|++|+...+..+...+ ...|..+|-.+.+.+++.+|+..+.++-.....-
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~Y 336 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDY 336 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhc
Confidence 445555555443221 123467899999999999886555 2356778999999999999999999998887654
No 298
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=62.25 E-value=73 Score=27.06 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHh
Q 010063 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIA 490 (519)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~ 490 (519)
.+.|...|++|.++. ..+.|.||-......+.+..|+. +|+.++|....++|++-.-..
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~e 231 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQ 231 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 357889999999999 77889999888888888888776 799999999999988765443
No 299
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=61.76 E-value=89 Score=27.91 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 286 LVLPLFSLGSLFIKEG--KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 286 ~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
...++.+||.+-...- ....++.+|.+++...+..++..|. ..|..+|..+++.+++.+|+..+-++-.....
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 3455556665544322 2233899999999999998866553 24667899999999999999999998887665
No 300
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=59.90 E-value=40 Score=23.30 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=23.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
+...|.-.-..|++++|+.+|..+++.+...
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3444555567899999999999999987654
No 301
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=59.09 E-value=46 Score=24.22 Aligned_cols=27 Identities=15% Similarity=-0.096 Sum_probs=21.9
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHhcC
Q 010063 466 TLYHLNRDKEAEKLVLEALYIREIAFG 492 (519)
Q Consensus 466 ~~~~~g~~~~A~~~~~~a~~~~~~~~~ 492 (519)
-.-..|++++|+.+|..+++.+.....
T Consensus 27 e~D~ag~y~eAl~lY~~Aie~l~~alk 53 (117)
T 2cpt_A 27 QEDKAGNYEEALQLYQHAVQYFLHVVK 53 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 344669999999999999998877653
No 302
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=58.59 E-value=39 Score=22.74 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=21.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 335 LAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
.|.-.-..|++++|+.+|.++++.+..
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344456789999999999999988665
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.37 E-value=61 Score=25.29 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 010063 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428 (519)
Q Consensus 349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 428 (519)
..++++++..+..... -.+++....++...+... +.+.++|..... .- .-...+..|...|..+...
T Consensus 43 ~~lLErc~~~f~~~~~-YknD~RyLklWl~ya~~~------~~p~~if~~L~~---~~---IG~~~AlfY~~wA~~lE~~ 109 (164)
T 2wvi_A 43 STLLERAVEALQGEKR-YYSDPRFLNLWLKLGRLC------NEPLDMYSYLHN---QG---IGVSLAQFYISWAEEYEAR 109 (164)
T ss_dssp HHHHHHHHHHTTTCGG-GTTCHHHHHHHHHHHHHC------SCHHHHHHHHHH---TT---SSTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhh-hccCHHHHHHHHHHHHhc------CCHHHHHHHHHH---CC---cchhhHHHHHHHHHHHHHc
Confidence 4567777777655322 234556666776666653 335556655433 11 2234456778889999999
Q ss_pred cCHHHHHHHHHHHHH
Q 010063 429 KNFVEAERLLRICLD 443 (519)
Q Consensus 429 g~~~~A~~~~~~al~ 443 (519)
|++.+|.+.|+.+++
T Consensus 110 ~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 110 ENFRKADAIFQEGIQ 124 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999988
No 304
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=58.04 E-value=1.1e+02 Score=27.89 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 010063 287 VLPLFSLGSLFIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (519)
Q Consensus 287 ~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (519)
..++.+||.+-...--. ..++.+|.+++...+..++..|. .-|..+|..+++.+++.+|+..+-++-.....-
T Consensus 277 PmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 351 (550)
T 3u84_A 277 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDY 351 (550)
T ss_dssp HHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred chhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 44555555544322111 24889999999999988865553 246678999999999999999999988877653
No 305
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=57.56 E-value=43 Score=25.24 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=38.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010063 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSG 190 (519)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 190 (519)
..+..+|.-++-.+.+...+ .+.+..+..+..+|.+|...|+..+|.+++.+|-+
T Consensus 99 d~lv~~~KkDqLdki~~~~l----------~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREIL----------KNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHhHHHHHHHHHh----------ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34455566555544444322 12445578899999999999999999999988765
No 306
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=57.28 E-value=1.1e+02 Score=27.42 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 375 MRIDLAELLHIV--GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 375 ~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
++.+||.+-... .....++.+|.+++...+..+++.|. .-|..+|..+.+.+++.+|+..+-++-...+.
T Consensus 257 ALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 257 AIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp HHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 334555544322 22234889999999999998876653 34566888999999999999999988876544
No 307
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=55.83 E-value=45 Score=25.15 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=37.0
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010063 425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (519)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (519)
...+|+-++-.+.+...+. +.+.....+..+|.+|.+.|+..+|.+++.+|-+
T Consensus 101 lv~~~KkDqLdki~~~~l~--------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILK--------NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhc--------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3456666655554444322 3344456778999999999999999999999865
No 308
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=55.47 E-value=19 Score=23.97 Aligned_cols=36 Identities=11% Similarity=-0.131 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCC
Q 010063 460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (519)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 495 (519)
...+|+=|...|+|+.|..+|+.+++...+....-.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 356788899999999999999999988777654433
No 309
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=54.76 E-value=1.3e+02 Score=27.56 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 390 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 390 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
..++.+|++|+...+..+.+.|. .-|..+|-.+.+.+++.+|+.++.++-.....
T Consensus 281 p~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 281 PDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp CCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 35678999999999998876652 45667899999999999999999998776544
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.48 E-value=74 Score=24.42 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcC
Q 010063 393 RELLEECLLITEKY-KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 471 (519)
Q Consensus 393 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 471 (519)
..++++++...... .-.+++.....+...+... +++.+.|.-... + .-....+..|...|..+...|
T Consensus 48 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~---~---~IG~~~AlfYe~wA~~lE~~g 115 (152)
T 4a1g_A 48 ITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYN---H---GIGTLSSPLYIAWAGHLEAQG 115 (152)
T ss_dssp HHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHT---T---TTTTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHH---C---CCcHHHHHHHHHHHHHHHHcC
Confidence 34556665554221 1135667777777666542 236666665543 1 122445667788899999999
Q ss_pred ChHHHHHHHHHHHH
Q 010063 472 RDKEAEKLVLEALY 485 (519)
Q Consensus 472 ~~~~A~~~~~~a~~ 485 (519)
++++|...|+..++
T Consensus 116 ~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 116 ELQHASAVLQRGIQ 129 (152)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999987
No 311
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=53.39 E-value=1.3e+02 Score=27.40 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 010063 391 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (519)
Q Consensus 391 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (519)
.++.+|.+++...+..+++.|. .-|..+|..+.+.+++.+|+..+-++-...+.
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~ 350 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQD 350 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 4788999999999988876653 34566888999999999999999988876544
No 312
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=53.24 E-value=40 Score=31.59 Aligned_cols=69 Identities=7% Similarity=0.008 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHH---hhCCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 010063 375 MRIDLAELLHIVGRGQEGRELLEECLLITEK---YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (519)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (519)
..+.+-.+|.+.|+..-+..+++..-. ... ...-.....+..++.+|.++...++|.+|.+.+..|+..
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~-~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQP-KSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHH-HCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcc-CCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 346677899999999999988854332 211 000012355677889999999999999999999999987
No 313
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=52.82 E-value=91 Score=25.26 Aligned_cols=85 Identities=19% Similarity=0.258 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHhcCC
Q 010063 394 ELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472 (519)
Q Consensus 394 ~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 472 (519)
.++++++..+.... -.+++.....+...+..+ ..++..++.+.|.-.... -.| ...+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~---~IG---~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK---GIG---TKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH---TSS---TTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC---CCc---HHHHHHHHHHHHHHHHcCC
Confidence 57777777654321 135777888888887765 334466888888776552 222 3456677888999999999
Q ss_pred hHHHHHHHHHHHH
Q 010063 473 DKEAEKLVLEALY 485 (519)
Q Consensus 473 ~~~A~~~~~~a~~ 485 (519)
+.+|...|+..++
T Consensus 131 ~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 131 FLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999887
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=52.57 E-value=1.9e+02 Score=30.26 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-------------HHhc--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 010063 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIY-------------TKVY--GENDGRVGMAMCSLAHAKCANGNAEEAVELY 352 (519)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (519)
..-+.+|.+|...|++++|..+|++|-.-. .... .+.......-|..+..++...+-++-++++.
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345789999999999999999999864210 0000 0001112335667777888888888888888
Q ss_pred HHHHHH
Q 010063 353 KKALRV 358 (519)
Q Consensus 353 ~~al~~ 358 (519)
+.|++.
T Consensus 921 ~lAI~~ 926 (950)
T 4gq2_M 921 LLADAS 926 (950)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 888875
No 315
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.54 E-value=67 Score=26.52 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhc
Q 010063 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428 (519)
Q Consensus 349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 428 (519)
..++++++..+...... .+++....++...+.. .+++..+|..... .- .-...+..|...|..+...
T Consensus 97 ~~lLErc~~~F~~~~rY-knD~RyLklWl~Ya~~------~~~p~~if~~L~~---~~---IG~~~AlfYe~wA~~lE~~ 163 (223)
T 4aez_C 97 VTLLERCTREFVRNPLY-KDDVRYLRIWMQYVNY------IDEPVELFSFLAH---HH---IGQESSIFYEEYANYFESR 163 (223)
T ss_dssp HHHHHHHHHHTTTCGGG-TTCHHHHHHHHHHHTT------CSCHHHHHHHHHH---TT---CSTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccc-cCCHHHHHHHHHHHHc------cCCHHHHHHHHHH---CC---cchhHHHHHHHHHHHHHHc
Confidence 46778888776654222 3455556666666653 2456666665433 11 2234456778889999999
Q ss_pred cCHHHHHHHHHHHHHH
Q 010063 429 KNFVEAERLLRICLDI 444 (519)
Q Consensus 429 g~~~~A~~~~~~al~~ 444 (519)
|++.+|...|+..++.
T Consensus 164 g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 164 GLFQKADEVYQKGKRM 179 (223)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999883
No 316
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=49.63 E-value=57 Score=21.97 Aligned_cols=29 Identities=21% Similarity=0.055 Sum_probs=22.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 010063 333 CSLAHAKCANGNAEEAVELYKKALRVIKD 361 (519)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (519)
...|.-.-..|++++|+.+|..+++.+..
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33444556789999999999999987654
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.45 E-value=59 Score=34.08 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcC----------------CCchHHHHHHHHHHHHHHccccHHHHHHHH
Q 010063 163 AILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK----------------DDEPLLDAILLHMGSMYSTLENYEKSMLVY 226 (519)
Q Consensus 163 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 226 (519)
..-+.+|.+|...|++++|..+|+++..-..... +........|..+..++...+-++-++.+.
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3458899999999999999999988643221000 000112223455666666666666666666
Q ss_pred HHHHHH
Q 010063 227 QRVINV 232 (519)
Q Consensus 227 ~~al~~ 232 (519)
+.|++.
T Consensus 921 ~lAI~~ 926 (950)
T 4gq2_M 921 LLADAS 926 (950)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 666654
No 318
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=46.76 E-value=1.4e+02 Score=27.90 Aligned_cols=69 Identities=7% Similarity=0.080 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhhh--hcC-CCchHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH-HH
Q 010063 166 DIIALGYVYIGDLKFVQSLLDMMSGIVD--SLK-DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV-LE 234 (519)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~ 234 (519)
+.+-.+|++.|+..-+..++........ .+. -...+....++.+|.++..+++|.+|.+.+..|+.. +.
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 4566889999999999998876544311 000 122356667889999999999999999999999987 54
No 319
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.87 E-value=78 Score=24.56 Aligned_cols=68 Identities=4% Similarity=-0.063 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCC--chHHHHHH---HHHHHHHHccccHHHHHHHHHHHHHHHHHh
Q 010063 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD--EPLLDAIL---LHMGSMYSTLENYEKSMLVYQRVINVLESR 236 (519)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 236 (519)
+.-+..++..|+|=+|-+.++.+-.... .. .......+ ...|......|+...|..++.+++......
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~---~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYG---RGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTC---SSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 3456667778999999999988765431 22 22222333 344556677899999999999999876543
No 320
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=43.06 E-value=50 Score=22.85 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=44.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCC
Q 010063 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI----EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (519)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (519)
..+..++..|+|-+|-+.++..-.. .+ .+ -..-+....|......|+. |...+.++.......++
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~-------~~-~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~ 74 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLK-------AT-GEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPC 74 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-------CC-HHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhh-------CC-CchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCC
Confidence 4566778889999999999987654 11 11 1222334455556678888 99999999887765543
No 321
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=41.86 E-value=45 Score=25.31 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcch
Q 010063 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 499 (519)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 499 (519)
.+...|.+|...|+.+.|.-+|-+.+.+...+ +.||+..
T Consensus 44 ~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk 82 (144)
T 2a9u_A 44 KIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFK 82 (144)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchh
Confidence 34566899999999999999999999998655 6787663
No 322
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=41.48 E-value=40 Score=25.71 Aligned_cols=41 Identities=5% Similarity=-0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcCCCCCcch
Q 010063 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 499 (519)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 499 (519)
..+...|.+|...|+.+.|.-+|-+...+.-..+ +.||+..
T Consensus 41 ~~llr~A~~y~~egd~e~AYily~R~~~L~~e~I-pkHpdy~ 81 (146)
T 2xze_A 41 VEIIRMASIYSEEGNIEHAFILYNKYITLFIEKL-PKHRDYK 81 (146)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTG-GGSTTTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc-ccCccch
Confidence 3456679999999999999999999999986443 4577664
No 323
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=39.84 E-value=27 Score=22.85 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 461 LHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
..+|..+...|++++|..+|-+|+.++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 467888999999999999999998765
No 324
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=39.51 E-value=43 Score=23.22 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 461 LHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
..+|..+...|+++.|..+|-+|+.++
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 467888889999999999888888766
No 325
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=38.83 E-value=2.3e+02 Score=25.86 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhcCC--C-Cc-------------chhHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 010063 433 EAERLLRICLDIMTKTVGP--D-DQ-------------SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 491 (519)
Q Consensus 433 ~A~~~~~~al~~~~~~~~~--~-~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 491 (519)
++.++|+++.+........ + -+ ..+.+++..|......+++-+|+..++.|.+..++..
T Consensus 217 ~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~ 291 (392)
T 1zb1_A 217 ATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISSL 291 (392)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 3446788888776653211 0 01 1122345567777788999999999999998877654
No 326
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=38.16 E-value=2.2e+02 Score=26.79 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhcc
Q 010063 390 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 429 (519)
Q Consensus 390 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 429 (519)
++|++.|++|+...++....+.+.....+..++..|...|
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aG 488 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAG 488 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhcc
Confidence 4677778888887777766667776666666665444333
No 327
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=37.50 E-value=85 Score=20.49 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 332 MCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
-..+|..+...|++++|..++-+|+..+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 4567888999999999999999998874
No 328
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=37.03 E-value=74 Score=21.99 Aligned_cols=64 Identities=20% Similarity=0.114 Sum_probs=42.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHH--HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh
Q 010063 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL--DAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 236 (519)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 236 (519)
.|..++..|+|=+|-+.++..-.... .+.... .-+....|......|+. |...+.+++......
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~---~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKAT---GEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCC---CchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 45666778999999999988765431 111222 22333445556678888 999999999876554
No 329
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=34.26 E-value=67 Score=30.16 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=30.0
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
......++..+|++|...|+|++|..+.++++...
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 45556788889999999999999999999998753
No 330
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=33.82 E-value=1.1e+02 Score=28.74 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 010063 263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSL 296 (519)
Q Consensus 263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 296 (519)
+|++.|++|++..++....+.+.....+..++..
T Consensus 450 kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~ 483 (526)
T 2wb7_A 450 GAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKK 483 (526)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhh
Confidence 4455555555555555545555555555555443
No 331
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=33.40 E-value=95 Score=25.21 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 010063 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE 346 (519)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 346 (519)
..+...+.+|.++...++|.+|...+..|+..+.+. .......++..+.-+-.-+|+..
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~---~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS---SQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh---HHHHHHHHHHHHHHHHHHcCCCC
Confidence 456677889999999999999999999999875321 11223334444444445567654
No 332
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=32.80 E-value=2.8e+02 Score=25.10 Aligned_cols=120 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcC------------ChHHHHHHHHHHHHHHHHh--------------hCCCChhHHHHHHHHHHH
Q 010063 371 IMENMRIDLAELLHIVG------------RGQEGRELLEECLLITEKY--------------KGKEHPSFVTHLLNLAAS 424 (519)
Q Consensus 371 ~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~~~~~la~~ 424 (519)
..+.+++++|.+|...+ ....|..+|++|-.++.-+ ..+-.+....++..+...
T Consensus 112 E~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~l~~~~~~~~~~~~~~~~Dls~~~l~~L~~l~LA 191 (376)
T 3r9m_A 112 ELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVIQCQA 191 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTGGGCSSCCCTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCHHHHHHHHHHHHH
Q ss_pred HHhccCHHHHHH-----------------HHHHHHHHHHHhcCCCCcch------------hHHHHHHHHHHHhcCChHH
Q 010063 425 YSRSKNFVEAER-----------------LLRICLDIMTKTVGPDDQSI------------SFPMLHLGITLYHLNRDKE 475 (519)
Q Consensus 425 ~~~~g~~~~A~~-----------------~~~~al~~~~~~~~~~~~~~------------~~~~~~la~~~~~~g~~~~ 475 (519)
..+.--+.+|+. +|+++..........-.... +.+++..|..+...+++.+
T Consensus 192 QAQE~~~~Kai~~~~k~~liAKLa~q~~~~Y~~a~~~l~~~~~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~~~k~Ge 271 (376)
T 3r9m_A 192 EAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGE 271 (376)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Q ss_pred HHHHHHHHHHHHHHh
Q 010063 476 AEKLVLEALYIREIA 490 (519)
Q Consensus 476 A~~~~~~a~~~~~~~ 490 (519)
|+..++.+.+..++.
T Consensus 272 aIa~L~~A~~~l~~a 286 (376)
T 3r9m_A 272 AIRSLQEAEKLYAKA 286 (376)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 333
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=32.25 E-value=2.3e+02 Score=26.20 Aligned_cols=34 Identities=9% Similarity=-0.028 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 010063 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (519)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (519)
+......+..|+..+...|++.||--++-.+..+
T Consensus 7 pdl~~~wl~~La~~h~~~~n~~EAa~cl~~~aal 40 (428)
T 2wm9_A 7 PELRKTWLDSMARIHVKNGDLSEAAMCYVHVTAL 40 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344566788999999999999998887655443
No 334
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.09 E-value=1.8e+02 Score=22.57 Aligned_cols=70 Identities=10% Similarity=-0.002 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCC---h--HHHHHH-HHHHHHHHhcCChHHHHHHHHHHHhhhh
Q 010063 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG---I--EEVAIL-DIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (519)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~--~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (519)
.-+..+..++..|+|-+|-+.++..... .... . -...+. ...|......|+..-|..++.+++....
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~-------~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYN-------YGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTT-------TCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHh-------cCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3556777888899999999999887543 1111 1 122233 3445556778999999999999988775
Q ss_pred hcC
Q 010063 194 SLK 196 (519)
Q Consensus 194 ~~~ 196 (519)
...
T Consensus 107 ~~~ 109 (161)
T 2ijq_A 107 GVP 109 (161)
T ss_dssp TSC
T ss_pred hCC
Confidence 543
No 335
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=31.82 E-value=3e+02 Score=25.09 Aligned_cols=32 Identities=16% Similarity=0.018 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHh
Q 010063 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (519)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (519)
+++..|......+++.+|+..++.+.+.....
T Consensus 259 A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 290 (392)
T 1zb1_A 259 SAYYHGLHLEEENRVGEAIAFLDFSMQQLISS 290 (392)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 34445555566667777777777666655443
No 336
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=31.34 E-value=72 Score=24.30 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 010063 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456 (519)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 456 (519)
+..+...|.+|...|+.+.|.-+|-+...+....+ +.||+.
T Consensus 40 a~~llr~A~~y~~egd~e~AYily~R~~~L~~e~I-pkHpdy 80 (146)
T 2xze_A 40 GVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKL-PKHRDY 80 (146)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTG-GGSTTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc-ccCccc
Confidence 34566779999999999999999999999886433 445554
No 337
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=31.16 E-value=1.1e+02 Score=24.75 Aligned_cols=59 Identities=14% Similarity=-0.071 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhCCCHH
Q 010063 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV 304 (519)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 304 (519)
..+.-.+.+|.++...++|.+|.+.+.+|+..+.+. .......++..+.-+-.-+|+..
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~---~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS---SQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh---HHHHHHHHHHHHHHHHHHcCCCC
Confidence 557778899999999999999999999998874221 11223334444444445566653
No 338
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=30.99 E-value=77 Score=29.72 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (519)
.+....++..+|.+|+..|++++|..+.++++...
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 34555678889999999999999999999998753
No 339
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=30.66 E-value=73 Score=29.97 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=30.0
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
......++..+|++|...|+|++|....++++...
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~~ 226 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKGA 226 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 45566788889999999999999999999998753
No 340
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=30.41 E-value=1.3e+02 Score=20.40 Aligned_cols=48 Identities=6% Similarity=0.010 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhhhcCCCchHHHHHH-HHHHHH
Q 010063 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL-LHMGSM 212 (519)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 212 (519)
..+..+..-|.-++..|+|.+|..+|+++.... ++|.+..++ +.++.|
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t-----en~~i~ki~~fyl~ec 99 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS-----DNEEIKKIASFYLEEC 99 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc-----cCHHHHHHHHHHHHHH
Confidence 345566677778899999999999999988764 335555444 444444
No 341
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.85 E-value=71 Score=22.14 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 010063 291 FSLGSLFIKEGKAVDAESVFSRILKIY 317 (519)
Q Consensus 291 ~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (519)
..+|..+...|+++.|+.+|-+|+..+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 457888889999999999999998876
No 342
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=26.61 E-value=99 Score=29.05 Aligned_cols=35 Identities=14% Similarity=-0.073 Sum_probs=29.5
Q ss_pred CcchhHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 010063 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (519)
Q Consensus 453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (519)
.+....++..+|++|.-.|++++|..+.++++...
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~~ 226 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKGA 226 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 45556677889999999999999999999998753
No 343
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=25.06 E-value=3.5e+02 Score=23.78 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 010063 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAV 148 (519)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 148 (519)
.+...+..+..+...|++++|+..|+..+...
T Consensus 113 ~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 144 (325)
T 3mv2_A 113 VVNEKMNEGYKNFKLNKPDIAIECFREAIYRI 144 (325)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 34446678889999999999999999998764
No 344
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=24.60 E-value=84 Score=29.70 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=29.3
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (519)
......++..+|++|...|+|++|....++++..
T Consensus 198 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 198 YINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4455678888999999999999999999999874
No 345
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=23.71 E-value=2.4e+02 Score=21.34 Aligned_cols=41 Identities=7% Similarity=0.015 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhcCCCCcchhH
Q 010063 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458 (519)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 458 (519)
..+...|..|...|+.+.|.-+|-+.+.+...+ +.||+.-.
T Consensus 43 ~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk~ 83 (144)
T 2a9u_A 43 LKIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQ 83 (144)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchhh
Confidence 455667999999999999999999999988655 67777654
No 346
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=21.85 E-value=97 Score=29.26 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=28.9
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010063 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (519)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (519)
......++..+|.+|+..|++++|....++++..
T Consensus 198 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 198 YINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3445567888999999999999999999998874
No 347
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=21.81 E-value=4.8e+02 Score=24.10 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 010063 329 GMAMCSLAHAKCANGNAEEAVELYKKALR 357 (519)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (519)
...+..|+..+...|++.||--++-.+..
T Consensus 11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aa 39 (428)
T 2wm9_A 11 KTWLDSMARIHVKNGDLSEAAMCYVHVTA 39 (428)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567889999999999999888764443
No 348
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=21.38 E-value=1.6e+02 Score=27.68 Aligned_cols=33 Identities=9% Similarity=-0.000 Sum_probs=28.6
Q ss_pred ChhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010063 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315 (519)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (519)
......++..+|++|..+|++++|..+.++++.
T Consensus 187 r~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 187 KPNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345567888999999999999999999999875
Done!