BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010064
(519 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 14/202 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G + L +L ++ Q + AL N+ G D AIV AG V ++KL+ S +
Sbjct: 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQ 103
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ +AN S D I +G V LVK L ++D +V +++A RAL N++
Sbjct: 104 KEAARALANI--ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV----QKEAARALANIAS 157
Query: 294 FPSN-ISFILETDLIRYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDA--FP 348
P I I++ + L+++L D E+ + L+N+ S P AI + DA
Sbjct: 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--TSAIKAIVDAGGVE 215
Query: 349 ILVDVLNWTDSPGCQEKASYVL 370
+L +L TDS Q++A L
Sbjct: 216 VLQKLLTSTDSE-VQKEAQRAL 236
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G + L +L ++ Q + AL N+ G D AIV AG V ++KL+ S +
Sbjct: 86 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQ 145
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ +AN S D I +G V LVK L ++D +V +++A RAL N++
Sbjct: 146 KEAARALANI--ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV----QKEAARALANIAS 199
Query: 294 FP-SNISFILETDLIRYLLEML--GDMELSERILSILSNLVS 332
P S I I++ + L ++L D E+ + L N+ S
Sbjct: 200 GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 89/169 (52%), Gaps = 23/169 (13%)
Query: 174 GAIPPLAGMLDFQLADSQI--SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAP 231
GA+P L +L + QI +L+AL N+ G + A++ AGA+ +++L+ SP
Sbjct: 54 GALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--- 108
Query: 232 NPSVSEAIVANFL-GLSALDS--NKPI--IGSSGAVPFLVKTLKNSDKKVSPQAKQDALR 286
+E I+ L LS + S N+ I + +GA+P LV+ L + ++++ Q+AL
Sbjct: 109 ----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI----LQEALW 160
Query: 287 ALYNL-SIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVS 332
AL N+ S I +++ + L+++L + ++ + L LSN+ S
Sbjct: 161 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL-NKAAIVK 214
++ L N + + + L IP L G+LD + + + AL N+ G D NK AI
Sbjct: 72 LQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN 131
Query: 215 AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK 253
V +++L+ A + ++E I LS+ DS K
Sbjct: 132 CDGVPALVRLLRK--ARDMDLTEVITGTLWNLSSHDSIK 168
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + + ++K
Sbjct: 76 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKY 135
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GAV +L L+ P S++ + N LS L NK PI +P LV+ L
Sbjct: 136 GAVDPLLALLAVP--DMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLH 193
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
+ D P+ D A+ L+ P+ I +++T ++ L+++LG EL
Sbjct: 194 HDD----PEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASEL 239
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 225 GVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQ 284
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A+ A+ N +
Sbjct: 285 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVSVLSKADFK----TQKEAVWAVTNYTS 338
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ IL +SN+ E
Sbjct: 339 GGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAE 384
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 20/126 (15%)
Query: 174 GAIPPLAGMLDFQLADSQI--SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAP 231
GA+P L +L + QI +L+AL N+ G + A++ AGA+ +++L+ SP
Sbjct: 54 GALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--- 108
Query: 232 NPSVSEAIVANFL-GLSALDS--NKPI--IGSSGAVPFLVKTLKNSDKKVSPQAKQDALR 286
+E I+ L LS + S N+ I + +GA+P LV+ L + ++++ Q+AL
Sbjct: 109 ----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI----LQEALW 160
Query: 287 ALYNLS 292
AL N++
Sbjct: 161 ALSNIA 166
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 19/166 (11%)
Query: 193 SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFL-GLSALDS 251
S+L L + G + A++ AGA+ +++L+ SP +E I+ L LS + S
Sbjct: 31 SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNIAS 83
Query: 252 --NKPI--IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL-SIFPSNISFILETDL 306
N+ I + +GA+P LV+ L + ++++ Q+AL AL N+ S I +++
Sbjct: 84 GGNEQIQAVIDAGALPALVQLLSSPNEQI----LQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 307 IRYLLEMLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPIL 350
+ L+++L + ++ + L LSN+ S +K + A P L
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPAL 185
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 20/126 (15%)
Query: 174 GAIPPLAGMLDFQLADSQI--SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAP 231
GA+P L +L + QI +L+AL N+ G + A++ AGA+ +++L+ SP
Sbjct: 54 GALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--- 108
Query: 232 NPSVSEAIVANFL-GLSALDS--NKPI--IGSSGAVPFLVKTLKNSDKKVSPQAKQDALR 286
+E I+ L LS + S N+ I + +GA+P LV+ L + ++++ Q+AL
Sbjct: 109 ----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI----LQEALW 160
Query: 287 ALYNLS 292
AL N++
Sbjct: 161 ALSNIA 166
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 19/148 (12%)
Query: 193 SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFL-GLSALDS 251
S+L L + G + A++ AGA+ +++L+ SP +E I+ L LS + S
Sbjct: 31 SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNIAS 83
Query: 252 --NKPI--IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL-SIFPSNISFILETDL 306
N+ I + +GA+P LV+ L + ++++ Q+AL AL N+ S I +++
Sbjct: 84 GGNEQIQAVIDAGALPALVQLLSSPNEQI----LQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 307 IRYLLEMLG--DMELSERILSILSNLVS 332
+ L+++L + ++ + L LSN+ S
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIAS 167
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 20/126 (15%)
Query: 174 GAIPPLAGMLDFQLADSQI--SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAP 231
GA+P L +L + QI +L+AL N+ G + A++ AGA+ +++L+ SP
Sbjct: 54 GALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--- 108
Query: 232 NPSVSEAIVANFL-GLSALDS--NKPI--IGSSGAVPFLVKTLKNSDKKVSPQAKQDALR 286
+E I+ L LS + S N+ I + +GA+P LV+ L + ++++ Q+AL
Sbjct: 109 ----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI----LQEALW 160
Query: 287 ALYNLS 292
AL N++
Sbjct: 161 ALSNIA 166
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 12/168 (7%)
Query: 158 SLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGA 217
++A SE + GAIP +L A +++AL N+ + ++K GA
Sbjct: 146 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGA 205
Query: 218 VHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLKNS 272
+ +L L+ P +++ + N LS L NK P+ +P LV+ L ++
Sbjct: 206 IDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 263
Query: 273 DKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 264 D----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 307
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 293 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 352
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K ++ A A+ N +
Sbjct: 353 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFKT----QKAAAWAITNYTS 406
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 407 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA 230
Q S +AL N+ G A+V GA+ + L+ SP A
Sbjct: 137 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA 176
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD 250
Q +L A+ N+ GNDL ++ AG + + L+ S P ++ + ++A +
Sbjct: 316 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTISNITAGN 372
Query: 251 SNK-PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI----FPSNISFILETD 305
+ + + + +P LVK L+ ++ K K++A A+ N S P I +++
Sbjct: 373 TEQIQAVIDANLIPPLVKLLEVAEYKT----KKEACWAISNASSGGLQRPDIIRYLVSQG 428
Query: 306 LIRYLLEML--GDMELSERILSILSNLVSTPEGRK 338
I+ L ++L D + E L L N++ E K
Sbjct: 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 463
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 179 LAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEA 238
L +L + Q +L A+ N+ GNDL ++ AG + + L+ S P ++ +
Sbjct: 216 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKE 272
Query: 239 IVANFLGLSALDSNK-PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI---- 293
++A ++ + + + +P LVK L+ ++ K K++A A+ N S
Sbjct: 273 ACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK----TKKEACWAISNASSGGLQ 328
Query: 294 FPSNISFILETDLIRYLLEML--GDMELSERILSILSNLVSTPEGRK 338
P I +++ I+ L ++L D + E L L N++ E K
Sbjct: 329 RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIIKMGEADK 375
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 111 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 170
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 171 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 228
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 229 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 274
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 260 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 319
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 320 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFKT----QKEAAWAITNYTS 373
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 374 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 419
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA 230
Q S +AL N+ G A+V GA+ + L+ SP A
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA 143
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 184
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 185 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 242
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 243 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 288
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 333
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 334 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFKT----QKEAAWAITNYTS 387
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 388 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA 230
Q S +AL N+ G A+V GA+ + L+ SP A
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA 157
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 101 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 160
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 161 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 218
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 219 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 264
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 250 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 309
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 310 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFK----TQKEAAWAITNYTS 363
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 364 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 409
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 75 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 134
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 135 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 192
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 193 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 238
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 224 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 283
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 284 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFK----TQKEAAWAITNYTS 337
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 338 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 383
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA 230
Q S +AL N+ G A+V GA+ + L+ SP A
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA 107
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD 250
Q +L A+ N+ GNDL ++ AG + + L+ S P ++ + ++A +
Sbjct: 229 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTISNITAGN 285
Query: 251 SNK-PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI----FPSNISFILETD 305
+ + + + +P LVK L+ ++ K K++A A+ N S P I +++
Sbjct: 286 TEQIQAVIDANLIPPLVKLLEVAEDK----TKKEACWAISNASSGGLQRPDIIRYLVSQG 341
Query: 306 LIRYLLEML--GDMELSERILSILSNLVSTPEGRK 338
I+ L ++L D + E L L N++ E K
Sbjct: 342 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 376
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD 250
Q +L A+ N+ GNDL ++ AG + + L+ S P ++ + ++A +
Sbjct: 229 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTISNITAGN 285
Query: 251 SNK-PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI----FPSNISFILETD 305
+ + + + +P LVK L+ ++ K K++A A+ N S P I +++
Sbjct: 286 TEQIQAVIDANLIPPLVKLLEVAEDK----TKKEACWAISNASSGGLQRPDIIRYLVSQG 341
Query: 306 LIRYLLEML--GDMELSERILSILSNLVSTPEGRK 338
I+ L ++L D + E L L N++ E K
Sbjct: 342 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 376
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 184
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 185 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 242
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 243 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 288
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 333
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 334 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFKT----QKEAAWAITNYTS 387
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 388 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA 230
Q S +AL N+ G A+V GA+ + L+ SP A
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA 157
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 109 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 168
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 169 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 226
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 227 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 272
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 258 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 317
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 318 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFKT----QKEAAWAITNYTS 371
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 372 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 417
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 81 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 140
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 141 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 198
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 199 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 244
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 230 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 289
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 290 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFK----TQKEAAWAITNYTS 343
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 344 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 389
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA 230
Q S +AL N+ G A+V GA+ + L+ SP A
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA 113
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 184
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 185 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 242
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 243 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 288
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 333
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 334 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFKT----QKEAAWAITNYTS 387
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 388 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA 230
Q S +AL N+ G A+V GA+ + L+ SP A
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA 157
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 74 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 133
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 134 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 191
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 192 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 237
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 223 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 282
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 283 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFK----TQKEAAWAITNYTS 336
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 337 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 382
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD 250
Q +L A+ N+ GNDL ++ AG + + L+ S P ++ + ++A +
Sbjct: 230 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTISNITAGN 286
Query: 251 SNK-PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI----FPSNISFILETD 305
+ + + + +P LVK L+ ++ K K++A A+ N S P I +++
Sbjct: 287 TEQIQAVIDANLIPPLVKLLEVAEDK----TKKEACWAISNASSGGLQRPDIIRYLVSQG 342
Query: 306 LIRYLLEML--GDMELSERILSILSNLVSTPEGRK 338
I+ L ++L D + E L L N++ E K
Sbjct: 343 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 377
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 74 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 133
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 134 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 191
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 192 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 237
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 223 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 282
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 283 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFK----TQKEAAWAITNYTS 336
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 337 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 382
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 75 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 134
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 135 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 192
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 193 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 238
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 224 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 283
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 284 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFK----TQKEAAWAITNYTS 337
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 338 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 383
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 75 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 134
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 135 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 192
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 193 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 238
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 224 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 283
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 284 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFK----TQKEAAWAITNYTS 337
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 338 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 383
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD 250
Q +L A+ N+ GNDL ++ AG + + L+ S P ++ + ++A +
Sbjct: 230 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTISNITAGN 286
Query: 251 SNK-PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI----FPSNISFILETD 305
+ + + + +P LVK L+ ++ K K++A A+ N S P I +++
Sbjct: 287 TEQIQAVIDANLIPPLVKLLEVAEDK----TKKEACWAISNASSGGLQRPDIIRYLVSQG 342
Query: 306 LIRYLLEML--GDMELSERILSILSNLVSTPEGRK 338
I+ L ++L D + E L L N++ E K
Sbjct: 343 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 377
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 70 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 129
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 130 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 187
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 188 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 233
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 219 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 278
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 279 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFK----TQKEAAWAITNYTS 332
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 333 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 378
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 156 VRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215
+ ++A SE + GAIP +L A +++AL N+ + ++K
Sbjct: 70 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 129
Query: 216 GAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNK----PIIGSSGAVPFLVKTLK 270
GA+ +L L+ P +++ + N LS L NK P+ +P LV+ L
Sbjct: 130 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 187
Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDMEL 319
++D P+ D+ A+ L+ P+ I +++ ++ L+++LG EL
Sbjct: 188 HND----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 233
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
G +P L +L +L A+ N+ G D ++ AGA+ L+ +P
Sbjct: 219 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 278
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
+ ++N D + ++ + G VPFLV L +D K +++A A+ N +
Sbjct: 279 KEATWTMSNITA-GRQDQIQQVV-NHGLVPFLVGVLSKADFK----TQKEAAWAITNYTS 332
Query: 294 FPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPE 335
+ I +++ +I L+ +L D ++ + IL +SN+ E
Sbjct: 333 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 378
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 179 LAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEA 238
L +L + Q +L A+ N+ GNDL ++ AG + + L+ S P ++ +
Sbjct: 216 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKE 272
Query: 239 IVANFLGLSALDSNK-PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI---- 293
++A ++ + + + +P LVK L+ ++ K K++A A+ N S
Sbjct: 273 ACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK----TKKEACWAISNASSGGLQ 328
Query: 294 FPSNISFILETDLIRYLLEML--GDMELSERILSILSNLVSTPEGRK 338
P I +++ I+ L ++L D + E L L N++ E K
Sbjct: 329 RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 375
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 186 QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLG 245
Q+ D+ + L+LGI A VK GAV + +L+E +A P VA LG
Sbjct: 33 QVYDADAFDVEVALHLGI-------AYVKTGAVDRGTELLERSIADAP--DNIKVATVLG 83
Query: 246 LSALDSNKPIIGSSGAVPFLVKT 268
L+ + K + AVP LVK
Sbjct: 84 LTYVQVQKYDL----AVPLLVKV 102
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAI 239
A ML Q+ D+ + L+LGI A VK GAV + +L+E +A P
Sbjct: 27 AVMLLEQVYDADAFDVDVALHLGI-------AYVKTGAVDRGTELLERSLADAP--DNVK 77
Query: 240 VANFLGLSALDSNKPIIGSSGAVPFLVKT 268
VA LGL+ + K + AVP L+K
Sbjct: 78 VATVLGLTYVQVQKYDL----AVPLLIKV 102
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAI 239
A ML Q+ D+ + L+LGI A VK GAV + +L+E +A P
Sbjct: 27 AVMLLEQVYDADAFDVDVALHLGI-------AYVKTGAVDRGTELLERSLADAP--DNVK 77
Query: 240 VANFLGLSALDSNKPIIGSSGAVPFLVKT 268
VA LGL+ + K + AVP L+K
Sbjct: 78 VATVLGLTYVQVQKYDL----AVPLLIKV 102
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAI 239
A ML Q+ D+ + L+LGI A VK GAV + +L+E +A P
Sbjct: 27 AVMLLEQVYDADAFDVDVALHLGI-------AYVKTGAVDRGTELLERSLADAP--DNVK 77
Query: 240 VANFLGLSALDSNKPIIGSSGAVPFLVKT 268
VA LGL+ + K + AVP L+K
Sbjct: 78 VATVLGLTYVQVQKYDL----AVPLLIKV 102
>pdb|3DBY|A Chain A, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|B Chain B, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|C Chain C, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|D Chain D, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|E Chain E, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|F Chain F, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|G Chain G, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|H Chain H, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|I Chain I, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|J Chain J, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|K Chain K, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|L Chain L, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|M Chain M, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|N Chain N, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|O Chain O, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|P Chain P, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|Q Chain Q, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|R Chain R, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|S Chain S, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
pdb|3DBY|T Chain T, Crystal Structure Of Uncharacterized Protein From Bacillus
Cereus G9241 (Csap Target)
Length = 269
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRAL-------YNLSIFPSNISFI----LETDLI 307
SG + + K LK ++ + +Q L+A+ L FP+ F LE L
Sbjct: 149 SGGLDLVEKRLKEKSEEFTKHFEQFYLKAVEMTGYLRTELHHFPALKKFTKDVSLELKLF 208
Query: 308 RYLLEMLGDMELSERILSILS 328
+ L + ++ELS +LS+LS
Sbjct: 209 SHFLHEVEELELSNEVLSVLS 229
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIES 227
Q S + L N+ GN L +++AGAV ++L+ S
Sbjct: 79 QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS 115
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIES 227
Q S + L N+ GN L +++AGAV ++L+ S
Sbjct: 82 QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,884,184
Number of Sequences: 62578
Number of extensions: 411998
Number of successful extensions: 1089
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 108
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)