Query 010064
Match_columns 519
No_of_seqs 294 out of 1965
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 20:37:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 5.8E-30 1.3E-34 266.9 27.2 291 117-418 98-394 (514)
2 KOG4224 Armadillo repeat prote 100.0 4E-29 8.6E-34 245.4 20.2 310 102-424 99-412 (550)
3 PLN03200 cellulose synthase-in 100.0 1.4E-27 3E-32 280.9 35.2 303 102-417 418-764 (2102)
4 PLN03200 cellulose synthase-in 100.0 9E-28 2E-32 282.4 33.6 363 110-506 385-795 (2102)
5 COG5064 SRP1 Karyopherin (impo 100.0 1.7E-29 3.8E-34 246.0 15.7 286 123-418 108-399 (526)
6 KOG4224 Armadillo repeat prote 100.0 7.2E-29 1.6E-33 243.6 19.7 302 102-418 140-447 (550)
7 KOG0166 Karyopherin (importin) 100.0 7.1E-28 1.5E-32 251.4 23.7 305 102-418 124-437 (514)
8 COG5064 SRP1 Karyopherin (impo 99.9 2.1E-25 4.6E-30 217.6 17.1 301 102-416 129-442 (526)
9 PF05804 KAP: Kinesin-associat 99.9 2E-23 4.2E-28 228.9 24.7 381 6-419 153-566 (708)
10 KOG2122 Beta-catenin-binding p 99.9 4.2E-21 9E-26 213.0 18.0 269 105-378 315-604 (2195)
11 PF05804 KAP: Kinesin-associat 99.8 5E-18 1.1E-22 186.6 30.4 304 104-418 306-650 (708)
12 KOG1048 Neural adherens juncti 99.8 3.7E-18 8.1E-23 183.8 17.5 287 134-423 235-601 (717)
13 KOG2122 Beta-catenin-binding p 99.8 2.5E-17 5.5E-22 183.4 20.6 261 150-419 316-603 (2195)
14 KOG4199 Uncharacterized conser 99.7 2.2E-14 4.8E-19 140.8 27.3 273 139-421 114-407 (461)
15 KOG4199 Uncharacterized conser 99.7 3.2E-14 6.9E-19 139.7 25.3 301 106-416 125-443 (461)
16 KOG1048 Neural adherens juncti 99.6 1.9E-14 4.1E-19 155.5 22.8 309 102-417 247-684 (717)
17 PF04826 Arm_2: Armadillo-like 99.5 1.3E-12 2.9E-17 128.5 22.3 195 171-376 9-206 (254)
18 PF04826 Arm_2: Armadillo-like 99.5 3.8E-12 8.2E-17 125.3 23.6 190 132-332 12-205 (254)
19 KOG1222 Kinesin associated pro 99.5 1.8E-12 3.8E-17 132.4 21.5 294 110-417 285-622 (791)
20 PF10508 Proteasom_PSMB: Prote 99.4 6.2E-11 1.3E-15 128.5 28.1 273 134-417 79-366 (503)
21 KOG4500 Rho/Rac GTPase guanine 99.3 1.3E-10 2.8E-15 117.7 21.4 285 132-422 87-395 (604)
22 PF10508 Proteasom_PSMB: Prote 99.3 5.6E-10 1.2E-14 121.1 25.8 268 137-416 43-318 (503)
23 cd00020 ARM Armadillo/beta-cat 99.3 6.1E-11 1.3E-15 102.4 13.7 117 169-292 2-119 (120)
24 cd00020 ARM Armadillo/beta-cat 99.3 1.6E-10 3.4E-15 99.7 14.6 117 125-247 3-119 (120)
25 cd00256 VATPase_H VATPase_H, r 99.2 1.3E-09 2.9E-14 114.0 22.0 279 133-416 102-424 (429)
26 KOG1222 Kinesin associated pro 99.2 7.9E-10 1.7E-14 113.4 18.2 253 150-416 281-577 (791)
27 KOG4500 Rho/Rac GTPase guanine 99.2 1.3E-09 2.8E-14 110.7 18.9 311 103-417 102-431 (604)
28 KOG0168 Putative ubiquitin fus 99.1 2.1E-09 4.7E-14 116.5 18.8 257 132-399 167-437 (1051)
29 PRK09687 putative lyase; Provi 99.1 7E-09 1.5E-13 104.1 19.1 223 134-417 25-250 (280)
30 PRK09687 putative lyase; Provi 99.0 1.6E-08 3.6E-13 101.4 19.4 227 127-414 49-279 (280)
31 PF03224 V-ATPase_H_N: V-ATPas 99.0 7.6E-09 1.7E-13 105.7 16.2 231 175-409 56-306 (312)
32 PRK13800 putative oxidoreducta 98.9 1.9E-07 4.2E-12 108.3 26.1 146 220-415 718-865 (897)
33 PF03224 V-ATPase_H_N: V-ATPas 98.9 4E-08 8.7E-13 100.4 14.8 231 132-368 55-307 (312)
34 PRK13800 putative oxidoreducta 98.8 1.6E-06 3.4E-11 100.7 25.6 226 129-414 649-896 (897)
35 KOG3678 SARM protein (with ste 98.7 9.2E-07 2E-11 90.9 18.2 263 134-419 182-454 (832)
36 KOG2160 Armadillo/beta-catenin 98.7 1.8E-06 3.9E-11 87.0 19.9 185 143-332 94-282 (342)
37 KOG0946 ER-Golgi vesicle-tethe 98.7 4.9E-06 1.1E-10 90.5 23.7 276 131-417 21-346 (970)
38 KOG1293 Proteins containing ar 98.7 2.6E-06 5.7E-11 91.1 21.1 142 275-418 388-534 (678)
39 KOG2160 Armadillo/beta-catenin 98.6 2.7E-06 5.8E-11 85.8 17.9 181 104-292 99-281 (342)
40 KOG2759 Vacuolar H+-ATPase V1 98.6 3E-06 6.6E-11 86.6 17.7 277 134-416 116-437 (442)
41 KOG1293 Proteins containing ar 98.6 1.7E-06 3.7E-11 92.5 16.5 224 143-376 388-628 (678)
42 PF01602 Adaptin_N: Adaptin N 98.5 1.3E-05 2.8E-10 87.6 22.7 274 102-417 93-369 (526)
43 KOG0168 Putative ubiquitin fus 98.5 3.7E-06 7.9E-11 92.0 16.3 212 131-355 210-436 (1051)
44 KOG2171 Karyopherin (importin) 98.4 6.2E-05 1.3E-09 85.4 25.2 311 102-424 132-511 (1075)
45 cd00256 VATPase_H VATPase_H, r 98.4 5.1E-05 1.1E-09 80.0 22.9 234 127-366 48-299 (429)
46 PF01602 Adaptin_N: Adaptin N 98.4 3E-05 6.6E-10 84.6 22.3 252 134-418 81-334 (526)
47 PTZ00429 beta-adaptin; Provisi 98.4 0.00015 3.3E-09 81.7 27.7 255 133-417 69-326 (746)
48 COG5369 Uncharacterized conser 98.4 3.7E-06 8.1E-11 87.9 13.6 260 150-416 407-740 (743)
49 KOG0946 ER-Golgi vesicle-tethe 98.4 4.4E-05 9.4E-10 83.3 20.7 283 132-418 61-400 (970)
50 KOG4646 Uncharacterized conser 98.3 5.9E-06 1.3E-10 72.1 11.3 124 130-258 14-139 (173)
51 KOG2973 Uncharacterized conser 98.2 0.00016 3.5E-09 71.5 19.5 233 134-376 5-316 (353)
52 KOG4646 Uncharacterized conser 98.2 2.9E-05 6.4E-10 67.9 12.2 152 259-415 15-168 (173)
53 KOG2023 Nuclear transport rece 98.0 0.0001 2.2E-09 79.2 14.8 271 129-416 125-462 (885)
54 PF05536 Neurochondrin: Neuroc 98.0 0.00037 8E-09 76.4 19.6 241 175-420 6-264 (543)
55 PF14664 RICTOR_N: Rapamycin-i 98.0 0.0028 6E-08 66.2 25.1 269 134-415 27-362 (371)
56 KOG2023 Nuclear transport rece 98.0 0.00014 3E-09 78.2 15.3 275 134-426 176-514 (885)
57 PF00514 Arm: Armadillo/beta-c 98.0 1E-05 2.3E-10 56.5 4.7 40 163-202 1-40 (41)
58 PTZ00429 beta-adaptin; Provisi 98.0 0.0033 7.1E-08 71.2 26.5 253 134-416 142-432 (746)
59 KOG2973 Uncharacterized conser 98.0 0.00034 7.3E-09 69.3 15.8 227 177-418 6-274 (353)
60 PF05536 Neurochondrin: Neuroc 97.9 0.00086 1.9E-08 73.5 20.4 235 132-375 5-261 (543)
61 KOG2171 Karyopherin (importin) 97.9 0.00081 1.7E-08 76.7 20.4 282 129-424 115-425 (1075)
62 KOG1789 Endocytosis protein RM 97.9 0.0012 2.6E-08 74.1 20.6 244 148-399 1741-2141(2235)
63 KOG2759 Vacuolar H+-ATPase V1 97.9 0.00051 1.1E-08 70.6 16.5 225 144-376 169-439 (442)
64 PF00514 Arm: Armadillo/beta-c 97.8 4.2E-05 9E-10 53.4 5.0 40 205-247 1-40 (41)
65 PF10165 Ric8: Guanine nucleot 97.8 0.0038 8.2E-08 67.0 22.3 233 143-376 43-338 (446)
66 KOG4413 26S proteasome regulat 97.8 0.0071 1.5E-07 60.6 22.2 282 127-415 126-482 (524)
67 KOG2734 Uncharacterized conser 97.6 0.02 4.3E-07 59.5 23.4 255 115-375 111-400 (536)
68 TIGR02270 conserved hypothetic 97.6 0.0059 1.3E-07 64.6 20.1 57 345-417 240-296 (410)
69 KOG2734 Uncharacterized conser 97.6 0.013 2.7E-07 60.9 21.2 239 151-398 103-371 (536)
70 PF10165 Ric8: Guanine nucleot 97.6 0.0045 9.8E-08 66.4 18.9 272 152-424 1-344 (446)
71 KOG4413 26S proteasome regulat 97.6 0.011 2.3E-07 59.3 19.6 267 140-416 90-376 (524)
72 KOG1241 Karyopherin (importin) 97.5 0.013 2.7E-07 64.5 20.8 275 130-418 170-478 (859)
73 KOG3678 SARM protein (with ste 97.5 0.003 6.5E-08 65.7 15.2 172 166-347 172-350 (832)
74 KOG1789 Endocytosis protein RM 97.4 0.057 1.2E-06 61.4 25.0 144 278-424 1739-1892(2235)
75 KOG1241 Karyopherin (importin) 97.4 0.0036 7.8E-08 68.6 15.3 231 135-376 220-478 (859)
76 TIGR02270 conserved hypothetic 97.4 0.013 2.9E-07 61.9 19.4 188 134-376 88-297 (410)
77 PF14664 RICTOR_N: Rapamycin-i 97.4 0.021 4.6E-07 59.7 20.0 252 155-416 6-268 (371)
78 PF13646 HEAT_2: HEAT repeats; 97.3 0.00079 1.7E-08 54.7 7.5 87 176-289 1-88 (88)
79 smart00185 ARM Armadillo/beta- 97.3 0.00056 1.2E-08 47.1 5.5 39 165-203 3-41 (41)
80 COG5369 Uncharacterized conser 97.3 0.0014 2.9E-08 69.3 10.3 195 193-395 408-615 (743)
81 PF13646 HEAT_2: HEAT repeats; 97.2 0.0013 2.7E-08 53.5 7.5 86 134-243 1-87 (88)
82 COG1413 FOG: HEAT repeat [Ener 97.2 0.041 8.9E-07 56.6 20.4 214 133-412 44-268 (335)
83 PF09759 Atx10homo_assoc: Spin 97.2 0.0022 4.7E-08 54.1 8.3 67 149-215 3-71 (102)
84 KOG1242 Protein containing ada 97.2 0.021 4.5E-07 61.7 17.6 274 134-422 136-449 (569)
85 COG5240 SEC21 Vesicle coat com 97.2 0.055 1.2E-06 58.0 20.1 93 149-252 244-336 (898)
86 PF12348 CLASP_N: CLASP N term 97.1 0.0053 1.1E-07 59.5 11.9 179 142-332 17-206 (228)
87 KOG1517 Guanine nucleotide bin 97.0 0.021 4.5E-07 64.8 16.2 201 210-416 506-731 (1387)
88 COG1413 FOG: HEAT repeat [Ener 97.0 0.04 8.7E-07 56.6 17.8 187 174-418 43-243 (335)
89 COG5240 SEC21 Vesicle coat com 97.0 0.04 8.6E-07 59.0 17.0 251 140-417 272-555 (898)
90 KOG1824 TATA-binding protein-i 97.0 0.056 1.2E-06 60.9 18.9 275 136-426 9-295 (1233)
91 smart00185 ARM Armadillo/beta- 96.9 0.0025 5.5E-08 43.7 5.3 39 206-247 2-40 (41)
92 KOG0213 Splicing factor 3b, su 96.9 0.074 1.6E-06 58.5 18.3 261 133-418 800-1108(1172)
93 PF11841 DUF3361: Domain of un 96.8 0.023 4.9E-07 51.8 12.0 131 254-385 5-142 (160)
94 KOG0212 Uncharacterized conser 96.8 0.082 1.8E-06 56.6 17.4 268 134-417 169-444 (675)
95 KOG0212 Uncharacterized conser 96.7 0.035 7.5E-07 59.4 14.2 194 133-336 209-410 (675)
96 PF12348 CLASP_N: CLASP N term 96.6 0.011 2.3E-07 57.4 9.5 176 232-418 20-207 (228)
97 KOG1062 Vesicle coat complex A 96.6 0.57 1.2E-05 52.3 22.9 59 137-202 112-170 (866)
98 KOG1242 Protein containing ada 96.6 0.11 2.5E-06 56.2 17.3 221 133-376 97-325 (569)
99 COG5231 VMA13 Vacuolar H+-ATPa 96.5 0.039 8.5E-07 55.2 12.1 230 181-416 156-427 (432)
100 PF09759 Atx10homo_assoc: Spin 96.4 0.012 2.6E-07 49.6 7.2 66 320-386 3-70 (102)
101 KOG1517 Guanine nucleotide bin 96.4 0.13 2.9E-06 58.6 17.2 201 172-377 510-734 (1387)
102 PF13513 HEAT_EZ: HEAT-like re 96.4 0.0076 1.6E-07 44.6 5.1 55 360-415 1-55 (55)
103 KOG2259 Uncharacterized conser 96.2 0.093 2E-06 57.2 14.2 213 134-371 236-471 (823)
104 COG5096 Vesicle coat complex, 96.0 2.1 4.5E-05 48.5 23.9 161 104-294 35-196 (757)
105 COG5181 HSH155 U2 snRNP splice 96.0 0.28 6.1E-06 53.2 16.2 263 132-421 604-875 (975)
106 KOG4151 Myosin assembly protei 96.0 0.03 6.5E-07 62.1 9.2 124 252-386 496-624 (748)
107 KOG1062 Vesicle coat complex A 96.0 0.39 8.4E-06 53.6 17.6 223 178-416 111-378 (866)
108 KOG4151 Myosin assembly protei 95.9 0.16 3.5E-06 56.6 14.7 234 165-413 495-737 (748)
109 KOG2259 Uncharacterized conser 95.9 0.098 2.1E-06 57.0 12.3 219 179-423 203-481 (823)
110 KOG1077 Vesicle coat complex A 95.8 0.86 1.9E-05 50.3 18.9 271 134-424 113-440 (938)
111 KOG1061 Vesicle coat complex A 95.8 0.19 4.2E-06 55.7 14.3 245 134-406 51-297 (734)
112 PF13513 HEAT_EZ: HEAT-like re 95.7 0.037 8E-07 40.9 6.2 55 188-246 1-55 (55)
113 PF08045 CDC14: Cell division 95.5 0.19 4.1E-06 49.6 11.8 103 146-249 105-209 (257)
114 KOG1061 Vesicle coat complex A 95.5 0.073 1.6E-06 59.0 9.7 69 134-205 123-191 (734)
115 KOG1078 Vesicle coat complex C 95.5 0.76 1.6E-05 51.3 17.3 255 137-416 250-531 (865)
116 KOG1059 Vesicle coat complex A 95.4 0.69 1.5E-05 51.1 16.8 213 175-416 145-364 (877)
117 KOG1059 Vesicle coat complex A 95.4 0.65 1.4E-05 51.3 16.5 239 134-398 146-423 (877)
118 KOG0213 Splicing factor 3b, su 95.4 2.2 4.8E-05 47.5 20.3 69 344-416 882-953 (1172)
119 COG5215 KAP95 Karyopherin (imp 95.4 0.47 1E-05 51.2 14.9 273 134-418 223-530 (858)
120 PF13764 E3_UbLigase_R4: E3 ub 95.3 2.2 4.7E-05 49.0 21.1 247 169-419 112-408 (802)
121 KOG3036 Protein involved in ce 95.3 0.58 1.3E-05 45.5 14.0 149 146-301 93-255 (293)
122 PF12719 Cnd3: Nuclear condens 95.2 1.2 2.6E-05 45.2 17.0 170 134-314 28-206 (298)
123 PF05004 IFRD: Interferon-rela 95.1 0.9 2E-05 46.4 15.9 187 221-419 48-259 (309)
124 KOG3036 Protein involved in ce 95.1 3.7 8E-05 40.1 18.9 177 192-375 97-291 (293)
125 PF07814 WAPL: Wings apart-lik 95.1 0.31 6.7E-06 50.9 12.7 246 133-390 22-314 (361)
126 KOG1077 Vesicle coat complex A 95.0 1.1 2.4E-05 49.5 16.7 113 263-388 371-500 (938)
127 PF11841 DUF3361: Domain of un 95.0 0.36 7.8E-06 44.1 11.3 117 299-416 5-130 (160)
128 KOG0567 HEAT repeat-containing 94.9 4.1 8.8E-05 40.2 18.8 199 173-420 66-283 (289)
129 COG5215 KAP95 Karyopherin (imp 94.9 3.9 8.5E-05 44.4 20.0 105 132-248 321-437 (858)
130 PF11698 V-ATPase_H_C: V-ATPas 94.8 0.095 2E-06 45.5 6.7 72 132-203 43-115 (119)
131 KOG1943 Beta-tubulin folding c 94.8 2.6 5.6E-05 48.9 19.5 248 134-409 343-603 (1133)
132 PF04078 Rcd1: Cell differenti 94.8 2.1 4.5E-05 42.3 16.7 227 186-415 7-260 (262)
133 PF12755 Vac14_Fab1_bd: Vacuol 94.8 0.24 5.3E-06 41.5 8.9 90 322-417 5-97 (97)
134 PF04063 DUF383: Domain of unk 94.7 0.13 2.7E-06 48.8 7.8 119 278-398 9-157 (192)
135 KOG2611 Neurochondrin/leucine- 94.5 2.4 5.2E-05 45.1 17.0 185 179-372 16-222 (698)
136 COG5231 VMA13 Vacuolar H+-ATPa 94.5 0.66 1.4E-05 46.8 12.4 221 146-374 163-427 (432)
137 KOG4464 Signaling protein RIC- 94.5 6.4 0.00014 41.2 19.7 162 134-296 47-234 (532)
138 KOG1824 TATA-binding protein-i 94.3 1.2 2.6E-05 50.8 15.2 133 134-272 613-746 (1233)
139 PF11698 V-ATPase_H_C: V-ATPas 94.1 0.11 2.3E-06 45.1 5.4 72 345-416 43-114 (119)
140 KOG1248 Uncharacterized conser 94.0 2.1 4.5E-05 50.0 16.9 214 185-416 665-897 (1176)
141 PF06371 Drf_GBD: Diaphanous G 93.7 0.23 5E-06 46.3 7.5 78 297-375 99-187 (187)
142 KOG1240 Protein kinase contain 93.7 4.2 9.1E-05 47.8 18.3 270 128-418 418-726 (1431)
143 PF12031 DUF3518: Domain of un 93.6 0.16 3.4E-06 49.3 6.0 87 319-405 140-233 (257)
144 PF08045 CDC14: Cell division 93.3 2.5 5.4E-05 41.8 14.1 97 319-416 107-206 (257)
145 PF04078 Rcd1: Cell differenti 93.1 2.3 5E-05 42.0 13.3 219 145-373 8-260 (262)
146 KOG2611 Neurochondrin/leucine- 92.9 5.3 0.00012 42.5 16.3 233 136-375 15-274 (698)
147 COG5181 HSH155 U2 snRNP splice 92.8 0.78 1.7E-05 49.9 10.3 210 175-417 605-829 (975)
148 PF05004 IFRD: Interferon-rela 92.7 6.4 0.00014 40.2 16.6 192 134-330 45-255 (309)
149 KOG2999 Regulator of Rac1, req 92.7 1.8 4E-05 46.6 12.7 162 219-385 86-253 (713)
150 PF14668 RICTOR_V: Rapamycin-i 92.6 0.41 8.9E-06 37.8 6.1 67 320-388 4-70 (73)
151 PF04063 DUF383: Domain of unk 92.6 0.84 1.8E-05 43.2 9.4 120 146-270 9-157 (192)
152 PF12717 Cnd1: non-SMC mitotic 92.3 7.1 0.00015 36.3 15.3 92 145-249 1-93 (178)
153 PF06025 DUF913: Domain of Unk 92.1 9.7 0.00021 40.1 17.5 108 211-319 100-210 (379)
154 PF07814 WAPL: Wings apart-lik 91.9 5.1 0.00011 41.8 15.2 266 102-380 36-360 (361)
155 PF12460 MMS19_C: RNAPII trans 91.8 2.9 6.3E-05 44.5 13.5 110 175-295 272-396 (415)
156 PF06025 DUF913: Domain of Unk 91.7 20 0.00043 37.8 20.3 82 146-228 123-208 (379)
157 PF12755 Vac14_Fab1_bd: Vacuol 91.5 0.92 2E-05 38.0 7.4 65 174-245 27-93 (97)
158 PF12031 DUF3518: Domain of un 91.4 0.56 1.2E-05 45.5 6.7 84 104-187 140-229 (257)
159 KOG1078 Vesicle coat complex C 91.4 20 0.00044 40.5 19.3 68 175-250 242-313 (865)
160 KOG4535 HEAT and armadillo rep 91.3 1.8 3.8E-05 46.0 10.6 210 174-401 433-659 (728)
161 PF08569 Mo25: Mo25-like; Int 91.2 2.9 6.3E-05 43.1 12.2 199 171-379 73-287 (335)
162 PF11701 UNC45-central: Myosin 91.2 2.4 5.3E-05 38.7 10.5 146 261-414 4-156 (157)
163 PF05918 API5: Apoptosis inhib 91.0 5.2 0.00011 43.9 14.4 134 134-289 25-158 (556)
164 KOG2999 Regulator of Rac1, req 91.0 6.6 0.00014 42.5 14.6 153 134-293 85-242 (713)
165 PRK14707 hypothetical protein; 90.7 17 0.00036 45.6 19.0 257 134-401 249-513 (2710)
166 KOG1240 Protein kinase contain 90.6 10 0.00022 44.8 16.6 232 134-376 464-726 (1431)
167 PF06371 Drf_GBD: Diaphanous G 90.5 3.6 7.9E-05 38.2 11.4 108 133-246 67-185 (187)
168 COG5096 Vesicle coat complex, 90.2 2.7 5.9E-05 47.6 11.7 103 132-247 92-194 (757)
169 KOG1058 Vesicle coat complex C 90.2 8.2 0.00018 43.3 14.8 92 276-378 371-466 (948)
170 PF02985 HEAT: HEAT repeat; I 89.9 0.52 1.1E-05 30.4 3.6 28 176-203 2-29 (31)
171 PF12717 Cnd1: non-SMC mitotic 89.8 11 0.00024 35.0 14.0 90 103-204 3-93 (178)
172 KOG4653 Uncharacterized conser 89.8 7.3 0.00016 44.3 14.3 217 185-416 738-963 (982)
173 KOG2274 Predicted importin 9 [ 89.1 44 0.00096 38.5 19.7 220 143-377 461-691 (1005)
174 PF14668 RICTOR_V: Rapamycin-i 89.0 1 2.2E-05 35.6 5.2 62 281-342 4-68 (73)
175 PF13764 E3_UbLigase_R4: E3 ub 88.8 51 0.0011 38.1 24.1 234 126-376 114-407 (802)
176 KOG0301 Phospholipase A2-activ 88.7 32 0.00069 38.3 17.8 169 137-314 549-725 (745)
177 PRK14707 hypothetical protein; 88.5 28 0.00061 43.7 18.6 264 144-419 177-448 (2710)
178 KOG0211 Protein phosphatase 2A 88.2 8.8 0.00019 43.9 13.9 250 147-416 370-624 (759)
179 KOG1967 DNA repair/transcripti 88.0 4.1 8.9E-05 46.5 10.9 150 209-369 861-1018(1030)
180 KOG1060 Vesicle coat complex A 87.8 4.4 9.5E-05 45.6 10.9 167 181-379 294-462 (968)
181 PF12530 DUF3730: Protein of u 87.7 29 0.00062 33.9 16.8 204 176-401 2-216 (234)
182 KOG4535 HEAT and armadillo rep 87.6 0.51 1.1E-05 49.9 3.5 99 276-375 496-603 (728)
183 COG5209 RCD1 Uncharacterized p 86.8 3 6.5E-05 40.1 7.8 146 147-299 115-274 (315)
184 KOG3665 ZYG-1-like serine/thre 86.3 6.5 0.00014 44.8 11.6 181 197-400 494-679 (699)
185 KOG1967 DNA repair/transcripti 86.2 8.8 0.00019 44.0 12.3 148 259-412 866-1019(1030)
186 PF02985 HEAT: HEAT repeat; I 86.1 1.5 3.3E-05 28.2 4.0 29 389-417 1-29 (31)
187 KOG1058 Vesicle coat complex C 85.4 15 0.00033 41.3 13.3 62 134-200 136-198 (948)
188 KOG1991 Nuclear transport rece 85.3 74 0.0016 37.1 19.0 256 146-416 432-710 (1010)
189 KOG1832 HIV-1 Vpr-binding prot 85.0 39 0.00085 38.9 16.3 122 298-419 594-775 (1516)
190 COG5209 RCD1 Uncharacterized p 84.9 3.2 7E-05 39.9 7.0 104 319-423 116-225 (315)
191 PF08569 Mo25: Mo25-like; Int 84.7 28 0.00061 36.0 14.5 160 256-421 72-242 (335)
192 KOG0211 Protein phosphatase 2A 84.7 31 0.00066 39.6 15.9 253 145-416 250-507 (759)
193 KOG3665 ZYG-1-like serine/thre 84.7 35 0.00077 38.9 16.5 200 147-369 487-691 (699)
194 smart00638 LPD_N Lipoprotein N 84.4 60 0.0013 36.0 18.2 171 217-417 358-543 (574)
195 PF08324 PUL: PUL domain; Int 83.6 5.4 0.00012 39.5 8.7 151 262-416 65-230 (268)
196 KOG1248 Uncharacterized conser 83.5 32 0.0007 40.7 15.4 221 143-376 665-899 (1176)
197 PF08324 PUL: PUL domain; Int 82.9 10 0.00022 37.5 10.3 187 177-367 66-266 (268)
198 KOG2032 Uncharacterized conser 82.5 56 0.0012 35.2 15.6 152 172-332 252-415 (533)
199 PF11864 DUF3384: Domain of un 82.1 80 0.0017 34.2 17.6 265 134-416 29-329 (464)
200 KOG2025 Chromosome condensatio 81.9 52 0.0011 37.1 15.5 113 134-257 87-199 (892)
201 KOG2274 Predicted importin 9 [ 81.8 45 0.00098 38.5 15.3 157 173-332 529-689 (1005)
202 KOG2062 26S proteasome regulat 81.4 44 0.00096 37.7 14.8 96 305-416 554-652 (929)
203 PF11701 UNC45-central: Myosin 81.4 14 0.0003 33.7 9.7 132 102-244 19-155 (157)
204 KOG1943 Beta-tubulin folding c 81.3 39 0.00085 39.7 14.9 149 260-417 341-500 (1133)
205 smart00638 LPD_N Lipoprotein N 81.1 59 0.0013 36.0 16.6 213 131-372 310-542 (574)
206 PF05918 API5: Apoptosis inhib 79.7 6.7 0.00015 43.1 8.1 67 132-203 59-125 (556)
207 PF12719 Cnd3: Nuclear condens 79.5 34 0.00075 34.5 12.9 111 174-296 26-146 (298)
208 KOG0567 HEAT repeat-containing 78.6 14 0.00029 36.7 8.9 96 126-246 181-278 (289)
209 KOG1243 Protein kinase [Genera 77.7 27 0.00059 39.0 11.9 250 137-416 259-514 (690)
210 KOG1788 Uncharacterized conser 77.5 1.3E+02 0.0027 35.8 17.0 181 149-333 749-983 (2799)
211 KOG2025 Chromosome condensatio 77.3 64 0.0014 36.4 14.5 145 150-311 64-213 (892)
212 cd03569 VHS_Hrs_Vps27p VHS dom 77.2 13 0.00029 33.3 8.0 75 129-203 38-114 (142)
213 cd03561 VHS VHS domain family; 76.5 17 0.00037 32.0 8.5 76 129-204 34-113 (133)
214 PF10363 DUF2435: Protein of u 76.2 6.8 0.00015 32.4 5.4 85 133-227 4-88 (92)
215 cd03568 VHS_STAM VHS domain fa 75.8 15 0.00033 33.0 8.0 75 129-203 34-110 (144)
216 PF01347 Vitellogenin_N: Lipop 75.8 25 0.00054 39.3 11.6 172 217-417 396-587 (618)
217 KOG0915 Uncharacterized conser 75.5 2.1E+02 0.0046 35.3 21.1 136 106-249 1015-1161(1702)
218 KOG1788 Uncharacterized conser 75.4 17 0.00037 42.4 9.7 214 194-416 662-936 (2799)
219 KOG1060 Vesicle coat complex A 75.2 75 0.0016 36.3 14.4 168 177-374 38-208 (968)
220 KOG1820 Microtubule-associated 73.9 50 0.0011 38.3 13.2 181 136-331 257-442 (815)
221 KOG2933 Uncharacterized conser 73.8 26 0.00056 35.5 9.6 143 134-292 90-233 (334)
222 KOG1991 Nuclear transport rece 73.5 1.9E+02 0.0042 33.9 21.4 244 117-373 451-709 (1010)
223 smart00288 VHS Domain present 73.4 20 0.00044 31.6 8.2 74 130-203 35-111 (133)
224 PF12460 MMS19_C: RNAPII trans 73.2 1.3E+02 0.0029 31.9 24.8 110 306-420 272-397 (415)
225 KOG4653 Uncharacterized conser 73.0 64 0.0014 37.2 13.3 71 131-202 726-796 (982)
226 KOG2137 Protein kinase [Signal 72.1 1.1E+02 0.0024 34.6 14.8 136 258-405 387-525 (700)
227 PF11707 Npa1: Ribosome 60S bi 72.0 1.2E+02 0.0027 31.1 21.2 156 176-335 58-240 (330)
228 cd03567 VHS_GGA VHS domain fam 71.9 25 0.00054 31.5 8.3 74 130-203 36-116 (139)
229 KOG0414 Chromosome condensatio 71.2 32 0.0007 40.7 10.9 134 260-409 919-1056(1251)
230 KOG2956 CLIP-associating prote 70.7 1.5E+02 0.0033 31.9 14.8 171 188-375 301-477 (516)
231 KOG0915 Uncharacterized conser 70.1 60 0.0013 39.6 12.9 170 217-402 999-1186(1702)
232 KOG2137 Protein kinase [Signal 68.9 29 0.00062 39.0 9.6 128 213-355 386-518 (700)
233 KOG4464 Signaling protein RIC- 68.8 90 0.002 33.0 12.4 165 243-416 33-227 (532)
234 PF01347 Vitellogenin_N: Lipop 68.4 37 0.00081 37.9 10.9 198 128-363 391-610 (618)
235 KOG2062 26S proteasome regulat 66.9 1.4E+02 0.003 34.0 14.1 129 176-331 520-652 (929)
236 KOG1832 HIV-1 Vpr-binding prot 65.3 16 0.00036 41.8 6.8 134 209-342 594-783 (1516)
237 PF14726 RTTN_N: Rotatin, an a 64.8 55 0.0012 27.4 8.4 68 172-243 28-95 (98)
238 PF10363 DUF2435: Protein of u 64.3 19 0.0004 29.8 5.5 82 309-401 7-90 (92)
239 PF04499 SAPS: SIT4 phosphatas 64.1 55 0.0012 35.6 10.6 110 304-416 20-148 (475)
240 KOG0414 Chromosome condensatio 63.8 95 0.002 37.0 12.6 132 143-295 934-1066(1251)
241 PF14500 MMS19_N: Dos2-interac 63.7 1.6E+02 0.0035 29.2 13.2 188 221-419 4-239 (262)
242 KOG2956 CLIP-associating prote 63.4 2.2E+02 0.0048 30.7 16.2 181 134-332 288-477 (516)
243 KOG1820 Microtubule-associated 62.0 1.3E+02 0.0028 35.0 13.5 171 232-414 266-440 (815)
244 PF08167 RIX1: rRNA processing 57.5 35 0.00076 31.3 6.7 109 175-293 26-143 (165)
245 PF01603 B56: Protein phosphat 57.1 1.1E+02 0.0023 32.6 11.2 231 133-379 134-374 (409)
246 COG5218 YCG1 Chromosome conden 56.9 1.8E+02 0.004 32.3 12.6 111 134-257 93-205 (885)
247 PF00790 VHS: VHS domain; Int 55.2 38 0.00083 30.1 6.4 74 130-203 40-118 (140)
248 PF11865 DUF3385: Domain of un 54.7 1.1E+02 0.0024 27.9 9.4 141 217-374 11-156 (160)
249 PF11707 Npa1: Ribosome 60S bi 52.6 2.8E+02 0.006 28.5 18.2 164 131-297 55-241 (330)
250 PF14225 MOR2-PAG1_C: Cell mor 52.6 2.5E+02 0.0054 27.9 17.2 167 188-374 76-253 (262)
251 PF04821 TIMELESS: Timeless pr 50.9 2.6E+02 0.0057 27.7 13.6 64 129-204 10-73 (266)
252 PF13251 DUF4042: Domain of un 50.3 1.9E+02 0.0042 27.0 10.5 142 148-293 2-174 (182)
253 COG5656 SXM1 Importin, protein 50.1 4.5E+02 0.0098 30.2 15.3 255 150-423 434-717 (970)
254 PF11865 DUF3385: Domain of un 49.2 1.5E+02 0.0032 27.0 9.4 144 261-415 11-155 (160)
255 KOG0301 Phospholipase A2-activ 49.2 1.9E+02 0.0041 32.5 11.4 157 186-356 556-727 (745)
256 PF06685 DUF1186: Protein of u 48.7 1.3E+02 0.0027 29.8 9.3 119 258-392 71-201 (249)
257 COG5116 RPN2 26S proteasome re 48.7 34 0.00074 37.5 5.6 64 305-377 551-617 (926)
258 KOG2032 Uncharacterized conser 46.5 1.3E+02 0.0029 32.5 9.5 149 259-412 253-411 (533)
259 PF08167 RIX1: rRNA processing 46.1 56 0.0012 29.9 6.2 106 134-246 27-141 (165)
260 PF14666 RICTOR_M: Rapamycin-i 43.4 3.2E+02 0.0069 26.6 12.5 127 277-415 77-223 (226)
261 PF10521 DUF2454: Protein of u 42.5 2.1E+02 0.0045 28.7 10.1 73 175-247 120-202 (282)
262 PF14726 RTTN_N: Rotatin, an a 41.6 1.3E+02 0.0028 25.2 7.0 69 344-414 29-97 (98)
263 PF10835 DUF2573: Protein of u 41.5 65 0.0014 25.7 4.8 63 344-418 9-72 (82)
264 COG5116 RPN2 26S proteasome re 41.4 99 0.0022 34.1 7.7 121 173-316 550-673 (926)
265 cd03568 VHS_STAM VHS domain fa 40.9 1.2E+02 0.0025 27.3 7.2 72 346-418 38-111 (144)
266 PF12830 Nipped-B_C: Sister ch 40.8 80 0.0017 29.5 6.4 68 346-419 9-76 (187)
267 PF08506 Cse1: Cse1; InterPro 40.0 3.3E+02 0.0072 28.5 11.5 155 115-288 197-370 (370)
268 COG5098 Chromosome condensatio 38.9 6.5E+02 0.014 28.8 14.5 143 132-295 891-1039(1128)
269 cd03561 VHS VHS domain family; 38.7 1.6E+02 0.0034 25.9 7.6 73 175-247 38-111 (133)
270 KOG1243 Protein kinase [Genera 38.3 2.6E+02 0.0056 31.6 10.5 181 172-370 328-510 (690)
271 cd03569 VHS_Hrs_Vps27p VHS dom 37.9 1.5E+02 0.0032 26.5 7.4 73 345-418 41-115 (142)
272 PF04064 DUF384: Domain of unk 37.6 58 0.0013 24.5 3.9 49 327-376 2-50 (58)
273 cd00197 VHS_ENTH_ANTH VHS, ENT 37.5 2.3E+02 0.005 23.8 8.3 70 132-201 37-113 (115)
274 PF08216 CTNNBL: Catenin-beta- 37.0 42 0.00092 28.6 3.4 41 150-191 64-104 (108)
275 COG5218 YCG1 Chromosome conden 36.5 2.9E+02 0.0062 30.9 10.2 99 259-366 90-190 (885)
276 cd03567 VHS_GGA VHS domain fam 35.5 1.7E+02 0.0038 26.1 7.3 72 346-418 39-117 (139)
277 PF12530 DUF3730: Protein of u 35.2 4.2E+02 0.0092 25.6 16.9 124 102-247 15-150 (234)
278 PF04821 TIMELESS: Timeless pr 34.6 4.5E+02 0.0098 26.1 11.0 80 336-416 101-207 (266)
279 KOG1566 Conserved protein Mo25 33.5 5.5E+02 0.012 26.4 13.1 201 170-379 75-290 (342)
280 KOG2933 Uncharacterized conser 33.5 2.8E+02 0.006 28.4 9.0 135 261-413 89-230 (334)
281 KOG1020 Sister chromatid cohes 33.2 2.8E+02 0.006 34.4 10.2 105 305-419 816-923 (1692)
282 PF10521 DUF2454: Protein of u 32.8 2.2E+02 0.0047 28.5 8.5 73 217-292 120-202 (282)
283 cd03565 VHS_Tom1 VHS domain fa 32.2 3.5E+02 0.0075 24.1 8.8 75 129-203 35-115 (141)
284 PF04064 DUF384: Domain of unk 32.2 1.9E+02 0.004 21.8 5.8 49 370-419 2-51 (58)
285 PF04869 Uso1_p115_head: Uso1 32.0 3.9E+02 0.0085 27.3 10.2 146 137-288 40-224 (312)
286 KOG2676 Uncharacterized conser 31.9 49 0.0011 34.2 3.5 63 152-214 376-440 (478)
287 PF12830 Nipped-B_C: Sister ch 31.7 4.3E+02 0.0093 24.6 11.8 69 133-207 9-78 (187)
288 KOG1020 Sister chromatid cohes 31.5 1E+03 0.022 29.8 14.4 109 132-251 816-924 (1692)
289 PF00790 VHS: VHS domain; Int 31.5 2.6E+02 0.0057 24.6 7.9 107 134-246 6-116 (140)
290 PF06012 DUF908: Domain of Unk 30.7 1.1E+02 0.0025 31.4 6.1 63 279-341 237-306 (329)
291 KOG2038 CAATT-binding transcri 30.2 3.7E+02 0.0081 30.9 10.1 62 276-341 316-380 (988)
292 PF04388 Hamartin: Hamartin pr 29.2 3.3E+02 0.0072 31.0 10.0 60 186-247 80-139 (668)
293 PF14500 MMS19_N: Dos2-interac 28.1 6E+02 0.013 25.2 15.6 213 139-375 6-237 (262)
294 smart00288 VHS Domain present 28.0 2.6E+02 0.0056 24.5 7.2 72 175-247 38-110 (133)
295 COG5656 SXM1 Importin, protein 27.9 1E+03 0.022 27.6 15.4 233 134-375 462-711 (970)
296 PF13251 DUF4042: Domain of un 27.5 5.2E+02 0.011 24.2 9.9 110 261-376 40-175 (182)
297 KOG0413 Uncharacterized conser 27.2 3.1E+02 0.0066 32.5 8.9 126 148-293 947-1073(1529)
298 cd03572 ENTH_epsin_related ENT 27.2 2.6E+02 0.0056 24.4 6.8 70 132-201 38-117 (122)
299 PF06012 DUF908: Domain of Unk 26.2 3.9E+02 0.0085 27.4 9.2 77 191-268 239-324 (329)
300 cd08050 TAF6 TATA Binding Prot 25.7 5.3E+02 0.012 26.6 10.1 148 131-291 177-338 (343)
301 KOG4231 Intracellular membrane 25.2 32 0.0007 37.1 1.0 69 348-417 330-399 (763)
302 KOG2073 SAP family cell cycle 25.0 6.2E+02 0.014 29.6 11.1 73 344-416 189-267 (838)
303 PF07923 N1221: N1221-like pro 25.0 1.4E+02 0.003 30.1 5.6 55 174-228 60-128 (293)
304 PF10274 ParcG: Parkin co-regu 24.8 3.3E+02 0.0073 25.5 7.5 73 134-206 40-112 (183)
305 PF08389 Xpo1: Exportin 1-like 24.0 1.3E+02 0.0028 26.1 4.6 66 261-327 83-148 (148)
306 cd03572 ENTH_epsin_related ENT 23.4 3.8E+02 0.0083 23.4 7.2 69 349-418 42-120 (122)
307 KOG1566 Conserved protein Mo25 22.9 8.4E+02 0.018 25.1 15.1 198 127-335 77-289 (342)
308 KOG4524 Uncharacterized conser 22.8 4.2E+02 0.0091 31.3 9.0 92 134-227 805-900 (1014)
309 KOG3988 Protein-tyrosine sulfo 22.1 43 0.00092 33.6 1.1 20 37-56 81-103 (378)
310 PF08216 CTNNBL: Catenin-beta- 21.9 67 0.0014 27.4 2.1 41 321-363 64-104 (108)
311 PF12231 Rif1_N: Rap1-interact 21.5 9.3E+02 0.02 25.1 12.7 132 277-416 59-203 (372)
312 KOG1848 Uncharacterized conser 21.0 3.6E+02 0.0078 33.2 8.3 228 175-408 797-1036(1610)
313 PF14663 RasGEF_N_2: Rapamycin 20.4 2E+02 0.0043 24.6 4.8 40 346-387 9-48 (115)
314 PF04510 DUF577: Family of unk 20.3 3.6E+02 0.0077 25.1 6.6 65 308-374 6-70 (174)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.8e-30 Score=266.93 Aligned_cols=291 Identities=19% Similarity=0.271 Sum_probs=257.9
Q ss_pred CChhhHHHHHhcchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHH
Q 010064 117 EGEAASEIKKKEEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSL 195 (519)
Q Consensus 117 ~~e~~~~~i~~~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~ 195 (519)
.+..-...+ ..|. ++.+|+.|.. .++..|.+|+|+|.+++.++.+....+++.|++|.++.+|.++++.+++.|.
T Consensus 98 ~~ppi~~vi-~~G~---v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQav 173 (514)
T KOG0166|consen 98 RNPPIDEVI-QSGV---VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAV 173 (514)
T ss_pred CCCCHHHHH-HcCc---HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHH
Confidence 333444444 4477 9999999974 4688999999999999999988888899999999999999999999999999
Q ss_pred HHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh-CCChHHHHHHhhcCCC
Q 010064 196 YALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS-SGAVPFLVKTLKNSDK 274 (519)
Q Consensus 196 ~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~-~gai~~LV~lL~~~~~ 274 (519)
|||+|++.+++..|..++++|++++|+.++..+. .......++|+|.||.......+.+.. ..++|.|..++..
T Consensus 174 WALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~--~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~--- 248 (514)
T KOG0166|consen 174 WALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD--KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHS--- 248 (514)
T ss_pred HHHhccccCChHHHHHHHhhcchHHHHHHhcccc--chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc---
Confidence 9999999999999999999999999999998872 236788999999999987755455444 7789999999998
Q ss_pred CCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhh
Q 010064 275 KVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPIL 350 (519)
Q Consensus 275 ~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~L 350 (519)
.+..+..+|+|||.+|+.+++ ..+.+++.|+++.|+.+|..++ ++..|+++++|++. ++...+.+++ .|+++.|
T Consensus 249 -~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~-~~~L~~l 326 (514)
T KOG0166|consen 249 -TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN-SGALPVL 326 (514)
T ss_pred -CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh-cChHHHH
Confidence 799999999999999998765 8899999999999999997554 88999999999998 5556667777 7999999
Q ss_pred hhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 351 VDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 351 v~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
..++..+....++++|||++.|++.++.++.++++++|++|.|+.++..+.-+.|+.|+|++.++.-.
T Consensus 327 ~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 327 SNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 99998666677999999999999999999999999999999999999999999999999999999943
No 2
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-29 Score=245.36 Aligned_cols=310 Identities=22% Similarity=0.211 Sum_probs=282.8
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG 181 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~ 181 (519)
+.+++-+-.++-|++.+-+++..+++.++ +..|+..+..++.+.|+.|+.+|.+|+.-+ ++|..++..|++.||..
T Consensus 99 ~~Iq~aa~~alGnlAVn~enk~liv~l~G---l~~Li~qmmtd~vevqcnaVgCitnLaT~d-~nk~kiA~sGaL~pltr 174 (550)
T KOG4224|consen 99 KCIQCAAGEALGNLAVNMENKGLIVSLLG---LDLLILQMMTDGVEVQCNAVGCITNLATFD-SNKVKIARSGALEPLTR 174 (550)
T ss_pred hhhhhhhhhhhccceeccCCceEEEeccC---hHHHHHHhcCCCcEEEeeehhhhhhhhccc-cchhhhhhccchhhhHh
Confidence 44566666688889988888888877777 888888888888999999999999999775 89999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCC-
Q 010064 182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSG- 260 (519)
Q Consensus 182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~g- 260 (519)
+-++.+..+|..++.+|.|+.. +.+||+.++.+|++|.|+.+++++ +.+++..++-++.+++.+..+|..+++.+
T Consensus 175 LakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~---d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 175 LAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSG---DLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred hcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccC---ChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 8889999999999999999999 599999999999999999999999 99999999999999999999999999877
Q ss_pred -ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccH
Q 010064 261 -AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGR 337 (519)
Q Consensus 261 -ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r 337 (519)
.||.||+++.. ++++++-.|.-+|.||+..++++..++++|.+|.++.+|.++ +.....+.++.|++..+-+-
T Consensus 251 ~lv~~Lv~Lmd~----~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 251 KLVPALVDLMDD----GSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE 326 (550)
T ss_pred chHHHHHHHHhC----CChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc
Confidence 99999999998 799999999999999999999999999999999999999765 36678888999999998888
Q ss_pred HHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 338 KAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 338 ~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
..|++ .|++.+|+.+|...++.++|-+|+.+|+||+..++.++..+.+.|+||.|++|+.++...+|.+...+++.|..
T Consensus 327 ~lI~d-agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 327 VLIAD-AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred cceec-ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 88888 79999999999977788899999999999999888899999999999999999999999999999999999995
Q ss_pred cCCCccc
Q 010064 418 DKGKQVS 424 (519)
Q Consensus 418 ~~~~~~~ 424 (519)
....+..
T Consensus 406 ~d~~k~~ 412 (550)
T KOG4224|consen 406 NDNDKEA 412 (550)
T ss_pred ccccHHH
Confidence 4444443
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=1.4e-27 Score=280.90 Aligned_cols=303 Identities=19% Similarity=0.209 Sum_probs=265.5
Q ss_pred hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv 180 (519)
...+++++.+|.+++.+ ++..+.+.+.|+ ++.|+++|.+++...|..|++.|++|+..+.+++..+++.|+||+|+
T Consensus 418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~gg---Ip~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV 494 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKGGLWEALGGREG---VQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLV 494 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCc---HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 45788888999999855 677888888888 99999999999999999999999999988888999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh-------
Q 010064 181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK------- 253 (519)
Q Consensus 181 ~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k------- 253 (519)
.+|++++..+++.|+|+|.||+.+++.++..+.++|++|+|+++|+++ +...++.++++|.+|....+..
T Consensus 495 ~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg---d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~ 571 (2102)
T PLN03200 495 QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG---GPKGQEIAAKTLTKLVRTADAATISQLTA 571 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 999999999999999999999996455566666889999999999998 8999999999999996332211
Q ss_pred ------------------------------hh-hhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHH
Q 010064 254 ------------------------------PI-IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFI 301 (519)
Q Consensus 254 ------------------------------~~-I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l 301 (519)
.. ....|+++.|++++.+ ++..++..|+|+|.|++.+.. ++..+
T Consensus 572 LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s----gs~~ikk~Aa~iLsnL~a~~~d~~~av 647 (2102)
T PLN03200 572 LLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS----SKEETQEKAASVLADIFSSRQDLCESL 647 (2102)
T ss_pred HhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 00 1136899999999998 799999999999999998664 78889
Q ss_pred HhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC--CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064 302 LETDLIRYLLEMLG--DMELSERILSILSNLVS--TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS 377 (519)
Q Consensus 302 ~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~--~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~ 377 (519)
+..|+|++|+.+|. +.+++..++++|.||+. ..+++..++. .|++++|+++|. +.+..+.+.|+.+|.||+.++
T Consensus 648 v~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~-~GaV~pL~~LL~-~~d~~v~e~Al~ALanLl~~~ 725 (2102)
T PLN03200 648 ATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAA-EDAIKPLIKLAK-SSSIEVAEQAVCALANLLSDP 725 (2102)
T ss_pred HHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH-cCCHHHHHHHHh-CCChHHHHHHHHHHHHHHcCc
Confidence 99999999999995 45699999999999996 4455667777 799999999999 678999999999999999984
Q ss_pred hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 378 YGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 378 ~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
+.+..+...|+|+.|++++.+|+++.|+.|.++|..|..
T Consensus 726 -e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 726 -EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred -hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 567788889999999999999999999999999998883
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=9e-28 Score=282.44 Aligned_cols=363 Identities=18% Similarity=0.192 Sum_probs=288.7
Q ss_pred HHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHH
Q 010064 110 LDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLAD 189 (519)
Q Consensus 110 ~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~ 189 (519)
.+|..+..+......+.+.++ ++.||.+|...+.+.|..+++.|..|+.++.+.+..+.+.|++|.|+++|.+++..
T Consensus 385 eALasl~gN~~l~~~L~~~da---ik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~ 461 (2102)
T PLN03200 385 EALASLYGNAYLSRKLNHAEA---KKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQ 461 (2102)
T ss_pred HHHHHhcCChHHHHHHHhccc---hhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHH
Confidence 334344444444445545555 89999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhh-hhhCCChHHHHHH
Q 010064 190 SQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPI-IGSSGAVPFLVKT 268 (519)
Q Consensus 190 ~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~-I~~~gai~~LV~l 268 (519)
.|+.++++|.||+.++++++..|+++|+||.|+++|.++ +..+++.|+|+|.|++.++++... +.+.|+||+|+++
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~---~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L 538 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG---SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998899999999999999999999998 899999999999999998766444 5578999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhcCCCccH-----------------H--------------------H-HHhcCcHHHH
Q 010064 269 LKNSDKKVSPQAKQDALRALYNLSIFPSNI-----------------S--------------------F-ILETDLIRYL 310 (519)
Q Consensus 269 L~~~~~~~~~~~~~~A~~aL~nLs~~~~n~-----------------~--------------------~-l~~~g~v~~L 310 (519)
|.+ ++..++..|+++|.||+.+.++. . . ....|+++.|
T Consensus 539 L~s----gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~L 614 (2102)
T PLN03200 539 LKN----GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTL 614 (2102)
T ss_pred HhC----CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHH
Confidence 998 68999999999999996433211 0 0 1135899999
Q ss_pred HHHcC--CHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHH
Q 010064 311 LEMLG--DMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY-GDRQAMIE 386 (519)
Q Consensus 311 v~lL~--~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~ 386 (519)
+.+|. ++.+++.|+++|.|++. .++.+..++. .|++++|+.+|. +++..+++.|+|+|.||+.+.. +++..+++
T Consensus 615 v~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~-agaIpPLV~LLs-s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~ 692 (2102)
T PLN03200 615 IQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT-DEIINPCIKLLT-NNTEAVATQSARALAALSRSIKENRKVSYAA 692 (2102)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHh-cCChHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99995 44699999999999998 6667788888 799999999999 6789999999999999997533 45677899
Q ss_pred cCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCccc-ccCCCcccccccccCccccCCCCCCCCCCCcchhhhhHhhh
Q 010064 387 AGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVS-GTYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLEEEED 465 (519)
Q Consensus 387 ~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (519)
.|+||+|++++...+..++..|..+|.++..++..... ..+|| + .|+-... ++..++
T Consensus 693 ~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~-I-------~~Lv~lL--------------r~G~~~ 750 (2102)
T PLN03200 693 EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDI-I-------LPLTRVL--------------REGTLE 750 (2102)
T ss_pred cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCc-H-------HHHHHHH--------------HhCChH
Confidence 99999999999999999999999999999977654443 22222 1 1111111 112334
Q ss_pred hhHHHHHHHHHHHHH-HHHH-HHHHHHHHhcCC--CCCCcccccc
Q 010064 466 MMSEEKKAVKQLVQQ-SLQN-NMKRIVKRANLP--QDFVPSEHFK 506 (519)
Q Consensus 466 ~~~~~~~~~~~~v~~-s~~~-~~~~i~~ra~~~--~~~~~~~~~~ 506 (519)
.++.+..++.++.++ +.+. ....++++-.+. .|+..+.+++
T Consensus 751 ~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~ 795 (2102)
T PLN03200 751 GKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLD 795 (2102)
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcc
Confidence 466777888888654 4555 557777776655 3444344433
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.7e-29 Score=246.03 Aligned_cols=286 Identities=19% Similarity=0.221 Sum_probs=249.2
Q ss_pred HHHHhcchhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 010064 123 EIKKKEEALEELKIVVKDL-QSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNL 201 (519)
Q Consensus 123 ~~i~~~g~~~~l~~Lv~~L-~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NL 201 (519)
+.+..+|. ++++|+++ .....-.+.+|+|+|.|++.+...-...++++|++|.+++||.+.+.++++.+.|||+|+
T Consensus 108 q~VIdaGv---VpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNi 184 (526)
T COG5064 108 QPVIDAGV---VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNI 184 (526)
T ss_pred hhHHhccc---cHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccc
Confidence 33447888 99999999 455667899999999999988766666678999999999999999999999999999999
Q ss_pred cCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhh-hCCChHHHHHHhhcCCCCCCHHH
Q 010064 202 GIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIG-SSGAVPFLVKTLKNSDKKVSPQA 280 (519)
Q Consensus 202 a~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~-~~gai~~LV~lL~~~~~~~~~~~ 280 (519)
+-+++..|..++++|++.+|+.++.+... +......+.|+|.||..-..-.+.-. -+.++|.|.+++.+ .++++
T Consensus 185 AGDS~~~RD~vL~~galeplL~ll~ss~~-~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys----~D~ev 259 (526)
T COG5064 185 AGDSEGCRDYVLQCGALEPLLGLLLSSAI-HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS----RDPEV 259 (526)
T ss_pred cCCchhHHHHHHhcCchHHHHHHHHhccc-hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhh----cCHHH
Confidence 99999999999999999999999987633 56888999999999985432222211 14579999999988 69999
Q ss_pred HHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccC
Q 010064 281 KQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNW 356 (519)
Q Consensus 281 ~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~ 356 (519)
..+|+||+.+|+..+. ..+.+++.|..+.|+.+|.+++ ++..|++.++|++. ++...+.+++ .|+++.|..+|.
T Consensus 260 lvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~lLs- 337 (526)
T COG5064 260 LVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRSLLS- 337 (526)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhee-cccHHHHHHHhc-
Confidence 9999999999999886 7888999999999999997665 89999999999998 4445556667 799999999998
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 357 TDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 357 s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
+....++++|||++.|+++++.++.+++++++.+|+|+.++.....+.|+.|+|++.++...
T Consensus 338 ~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 338 SPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 56678999999999999999999999999999999999999999999999999999999854
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.2e-29 Score=243.55 Aligned_cols=302 Identities=21% Similarity=0.267 Sum_probs=276.9
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG 181 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~ 181 (519)
...|+.++..+.|++.-+++|..+...|+ +.++.++-++.+..+|.+|...|.+++.. .++|+.++..|++|.||+
T Consensus 140 vevqcnaVgCitnLaT~d~nk~kiA~sGa---L~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVs 215 (550)
T KOG4224|consen 140 VEVQCNAVGCITNLATFDSNKVKIARSGA---LEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVS 215 (550)
T ss_pred cEEEeeehhhhhhhhccccchhhhhhccc---hhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhh
Confidence 45567788889999888999999988888 88888877888999999999999999954 599999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcC--cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhC
Q 010064 182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAG--AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSS 259 (519)
Q Consensus 182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG--~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~ 259 (519)
++++++.++|..++.++.|++++ ..+|+.++++| .||.|+.++.++ ++.++..|.-+|.+|+.+.++...|.+.
T Consensus 216 ll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~---s~kvkcqA~lALrnlasdt~Yq~eiv~a 291 (550)
T KOG4224|consen 216 LLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDG---SDKVKCQAGLALRNLASDTEYQREIVEA 291 (550)
T ss_pred hhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCC---ChHHHHHHHHHHhhhcccchhhhHHHhc
Confidence 99999999999999999999994 99999999998 999999999999 8999999999999999999999999999
Q ss_pred CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--C-HHHHHHHHHHHHHhcC-Ccc
Q 010064 260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--D-MELSERILSILSNLVS-TPE 335 (519)
Q Consensus 260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~-~~v~~~Al~~L~nLs~-~~e 335 (519)
|.+|.+|++|++ .........+.+++||+.++-|...++++|++.||+.+|. | .+++..|..+|+||+. +..
T Consensus 292 g~lP~lv~Llqs----~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~ 367 (550)
T KOG4224|consen 292 GSLPLLVELLQS----PMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH 367 (550)
T ss_pred CCchHHHHHHhC----cchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh
Confidence 999999999988 5777788889999999999999999999999999999993 3 4599999999999999 677
Q ss_pred cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064 336 GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415 (519)
Q Consensus 336 ~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l 415 (519)
++..|.. .|+|+.+.+++. .+.-.+|+....++..|+.. +..+..+.+.|++|.|+.++.+.+.+++..|+.+|.+|
T Consensus 368 n~~~i~e-sgAi~kl~eL~l-D~pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl 444 (550)
T KOG4224|consen 368 NVSVIRE-SGAIPKLIELLL-DGPVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL 444 (550)
T ss_pred hhHHHhh-cCchHHHHHHHh-cCChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence 8888888 899999999998 56788999998899888876 56799999999999999999999999999999999999
Q ss_pred hhc
Q 010064 416 RVD 418 (519)
Q Consensus 416 ~~~ 418 (519)
..+
T Consensus 445 ss~ 447 (550)
T KOG4224|consen 445 SSD 447 (550)
T ss_pred hhh
Confidence 954
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.1e-28 Score=251.36 Aligned_cols=305 Identities=20% Similarity=0.245 Sum_probs=266.7
Q ss_pred hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv 180 (519)
+..+.++.++|.|++.+ .+....+.++|. ++.++++|.+++.+++..|+|+|.+++.+.+.+|..+...|++++|+
T Consensus 124 ~~lq~eAAWaLTnIAsgtse~T~~vv~aga---vp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl 200 (514)
T KOG0166|consen 124 PTLQFEAAWALTNIASGTSEQTKVVVDAGA---VPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLL 200 (514)
T ss_pred hhHHHHHHHHHHHHhcCchhhccccccCCc---hHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHH
Confidence 45577889999999765 455556668888 99999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCH-HHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-Chhhhhh
Q 010064 181 GMLDFQLA-DSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NKPIIGS 258 (519)
Q Consensus 181 ~lL~s~~~-~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~k~~I~~ 258 (519)
.++..++. .....++|+|.|||.+..+.-..-.-..++|.|..++.+. |+++...|+|+|.+|+..+. .-..+++
T Consensus 201 ~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~---D~~Vl~Da~WAlsyLsdg~ne~iq~vi~ 277 (514)
T KOG0166|consen 201 RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST---DEEVLTDACWALSYLTDGSNEKIQMVID 277 (514)
T ss_pred HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99988665 7889999999999997544433333456899999999999 99999999999999996654 4556678
Q ss_pred CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC-CH--HHHHHHHHHHHHhcC-C
Q 010064 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG-DM--ELSERILSILSNLVS-T 333 (519)
Q Consensus 259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~-~~--~v~~~Al~~L~nLs~-~ 333 (519)
.|++|.||.+|.. .+..++..|++++.|++.+++ ..+.++..|+++.|..++. ++ .++++|+|+++|++. +
T Consensus 278 ~gvv~~LV~lL~~----~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~ 353 (514)
T KOG0166|consen 278 AGVVPRLVDLLGH----SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGN 353 (514)
T ss_pred ccchHHHHHHHcC----CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC
Confidence 9999999999998 688899999999999999988 5677889999999999996 33 288999999999999 7
Q ss_pred cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064 334 PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL 412 (519)
Q Consensus 334 ~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L 412 (519)
.+..+++++ .|.+|.|+.+|+ +.+.++|.+|+|+++|++.+ +++....+++.|+|++|..++...+.+....+..+|
T Consensus 354 ~~qiqaVid-a~l~p~Li~~l~-~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l 431 (514)
T KOG0166|consen 354 QEQIQAVID-ANLIPVLINLLQ-TAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGL 431 (514)
T ss_pred HHHHHHHHH-cccHHHHHHHHh-ccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHH
Confidence 778899999 799999999999 67799999999999999986 445677889999999999999989999999999999
Q ss_pred HHhhhc
Q 010064 413 ECLRVD 418 (519)
Q Consensus 413 ~~l~~~ 418 (519)
.++-.-
T Consensus 432 ~nil~~ 437 (514)
T KOG0166|consen 432 ENILKV 437 (514)
T ss_pred HHHHHH
Confidence 998843
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=2.1e-25 Score=217.56 Aligned_cols=301 Identities=19% Similarity=0.201 Sum_probs=257.6
Q ss_pred hhhHHHHHHHHHcccCChhhHHH-HHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEI-KKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~-i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv 180 (519)
.-.+.++.++|.|++.+..+... ++++|+ ++.++++|.+++.+++..|+|+|.|++.+++.+|+.+..+|+++||+
T Consensus 129 ~mlqfEAaWalTNiaSGtt~QTkvVvd~~A---VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL 205 (526)
T COG5064 129 DMLQFEAAWALTNIASGTTQQTKVVVDAGA---VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLL 205 (526)
T ss_pred hHHHHHHHHHHhhhccCcccceEEEEeCCc---hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHH
Confidence 44566888999999877655443 347788 99999999999999999999999999999999999999999999999
Q ss_pred HhhcCCC--HHHHHHHHHHHHHhcCCChh--hHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-Chhh
Q 010064 181 GMLDFQL--ADSQISSLYALLNLGIGNDL--NKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NKPI 255 (519)
Q Consensus 181 ~lL~s~~--~~~~~~a~~aL~NLa~~~~~--nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~k~~ 255 (519)
.+|.+.- ..+...+.|+|.|||.+-.+ +...| .-++|.|.+++.+. ++++.-.|+|++..|+.-+. .-..
T Consensus 206 ~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~---D~evlvDA~WAiSYlsDg~~E~i~a 280 (526)
T COG5064 206 GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSR---DPEVLVDACWAISYLSDGPNEKIQA 280 (526)
T ss_pred HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhc---CHHHHHHHHHHHHHhccCcHHHHHH
Confidence 9998744 57889999999999986322 23333 23689999999998 89999999999999997653 3556
Q ss_pred hhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC
Q 010064 256 IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVS 332 (519)
Q Consensus 256 I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~ 332 (519)
+.+.|..+.||.+|.. .+..++..|++.+.|+..+++ ..+.++..|+++.+..+|.++. ++.+|||++.|++.
T Consensus 281 vld~g~~~RLvElLs~----~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA 356 (526)
T COG5064 281 VLDVGIPGRLVELLSH----ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA 356 (526)
T ss_pred HHhcCCcHHHHHHhcC----ccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence 6789999999999998 688899999999999999887 5677889999999999998765 99999999999998
Q ss_pred -CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC---hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064 333 -TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS---YGDRQAMIEAGIASALLELTLLGSTLAQKRA 408 (519)
Q Consensus 333 -~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~---~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A 408 (519)
+.+..+++++ ...+|.|+.+|. +-+-.++++|||++.|.+.+. ++..+.+++.|+|.+|..++...+-++-+-+
T Consensus 357 Gnteqiqavid-~nliPpLi~lls-~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~ 434 (526)
T COG5064 357 GNTEQIQAVID-ANLIPPLIHLLS-SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA 434 (526)
T ss_pred CCHHHHHHHHh-cccchHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh
Confidence 7788899999 799999999999 567789999999999998763 3567788899999999999998777777777
Q ss_pred HHHHHHhh
Q 010064 409 SRILECLR 416 (519)
Q Consensus 409 ~~~L~~l~ 416 (519)
..++.++-
T Consensus 435 LD~~eniL 442 (526)
T COG5064 435 LDAIENIL 442 (526)
T ss_pred HHHHHHHH
Confidence 77777766
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=2e-23 Score=228.93 Aligned_cols=381 Identities=18% Similarity=0.185 Sum_probs=301.5
Q ss_pred cccccchhccCCC-----------CCCCCccccccchhhhhhhhhHHhhhhhhheecc---------CCccccccccccc
Q 010064 6 QNNVRSLILERND-----------GPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCG---------GSSRYGREILDDE 65 (519)
Q Consensus 6 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~ 65 (519)
..|.+.|+.+++. +.||...+.+..++|-.||+++-=+.++-.+.+| +..||.....|-.
T Consensus 153 ~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~ 232 (708)
T PF05804_consen 153 PENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELR 232 (708)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777654 7888888878899999999999888888877765 2336555544333
Q ss_pred CCCC---CCcchhhhhcccCCCCCCCCCCCccchh-hhhc-hhhHHH----HHHHHHcccCChhhHHHHHhcchhHHHHH
Q 010064 66 GISL---PTPKAKTEMESRGVDSEKGNGRKPEKQK-EAKG-CVSKSE----KLLDLLNLAEGEAASEIKKKEEALEELKI 136 (519)
Q Consensus 66 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~----~l~aLl~ls~~e~~~~~i~~~g~~~~l~~ 136 (519)
..++ ..|.... .+.+.. ..+. .+.|.+ ++..|+|++++..++..+++.+. ++.
T Consensus 233 ~~~~~~~~~~~~~~---------------~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAed~~ve~kM~~~~i---V~~ 294 (708)
T PF05804_consen 233 KKKKAAEEKPEAKK---------------DYEKELKKLQTLIRKQEQLLRVAFYLLLNLAEDPRVELKMVNKGI---VSL 294 (708)
T ss_pred hhhhhhccchhhhh---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhcCC---HHH
Confidence 2222 1111100 000000 0000 111222 22468999999999999999898 999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcC
Q 010064 137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAG 216 (519)
Q Consensus 137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG 216 (519)
|++.|.+++.+..+.++.+|.+|+... +++..+.+.|+|++|++++++++.+++..++++|+||+.+ +.+|..|++.|
T Consensus 295 Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~G 372 (708)
T PF05804_consen 295 LVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLG 372 (708)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCC
Confidence 999999999999999999999999765 8999999999999999999999999999999999999994 99999999999
Q ss_pred cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 010064 217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS 296 (519)
Q Consensus 217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~ 296 (519)
++|.|+.+|.++ ..+..+..+|.+||.++++|..+...+++|.|++++... .+..+...+++++.||+.++.
T Consensus 373 lIPkLv~LL~d~-----~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~---~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 373 LIPKLVELLKDP-----NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN---SEEEVQLELIALLINLALNKR 444 (708)
T ss_pred CcHHHHHHhCCC-----chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC---CCccccHHHHHHHHHHhcCHH
Confidence 999999999875 456778899999999999999999999999999988774 567777889999999999999
Q ss_pred cHHHHHhcCcHHHHHHHc-CCHHHHHHHHHHHHHhcCCc-ccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064 297 NISFILETDLIRYLLEML-GDMELSERILSILSNLVSTP-EGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA 374 (519)
Q Consensus 297 n~~~l~~~g~v~~Lv~lL-~~~~v~~~Al~~L~nLs~~~-e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~ 374 (519)
|.+.+++.++++.|+... +..+ ...+.+++|++.++ ..+..+. +.+..|+.++...++++..-++.++|.||+
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D--~lLlKlIRNiS~h~~~~k~~f~---~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRD--PLLLKLIRNISQHDGPLKELFV---DFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhccc--HHHHHHHHHHHhcCchHHHHHH---HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 999999999999999776 2222 12457999999976 4444443 388999999986778899999999999999
Q ss_pred cCChhhHHHHHHcCcHHHHHHHhhcC--CHHHHHHHHHHHHHhhhcC
Q 010064 375 HKSYGDRQAMIEAGIASALLELTLLG--STLAQKRASRILECLRVDK 419 (519)
Q Consensus 375 ~~~~~~~~~i~~~G~i~~Ll~Ll~~g--s~~~~~~A~~~L~~l~~~~ 419 (519)
..+....+.+.+.+.+|-|..++..| .+++.-.+..++..++.|+
T Consensus 520 ~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~ 566 (708)
T PF05804_consen 520 IPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP 566 (708)
T ss_pred cCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence 87666667777889999999999876 3478888888888888554
No 10
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.86 E-value=4.2e-21 Score=212.96 Aligned_cols=269 Identities=19% Similarity=0.198 Sum_probs=235.4
Q ss_pred HHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcC--C-------CHHHHHHHHHHHHHHhccChhhHHHHHh-cC
Q 010064 105 KSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQS--E-------SEEQRREAASKVRSLAKENSETRVTLAM-LG 174 (519)
Q Consensus 105 ~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s--~-------~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G 174 (519)
.+.+++.|++++++|+++..+.+.|+++.|..||..-+. + +..++.+|+++|.||++++..++..++. .|
T Consensus 315 lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 315 LCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 568889999999999999999999998888888876531 1 2347899999999999999999998876 79
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh-HHHHHhcCcHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhccCC-C
Q 010064 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN-KAAIVKAGAVHKMLKL-IESPVAPNPSVSEAIVANFLGLSALD-S 251 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n-k~~iv~aG~v~~Lv~l-L~s~~~~~~~~~~~a~~aL~~LS~~~-~ 251 (519)
+++.+|..|.+..++++...+.+|+||+|..+.| |+.+-+.|-|..|+.+ ++.. .+....+++.+||||+.+- +
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~---kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK---KESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc---ccchHHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999998888 5566678999999885 6666 6678889999999999874 7
Q ss_pred Chhhhhh-CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC----CCccHHHHHhcCcHHHHHHHcCCHH--HHHHHH
Q 010064 252 NKPIIGS-SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI----FPSNISFILETDLIRYLLEMLGDME--LSERIL 324 (519)
Q Consensus 252 ~k~~I~~-~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~----~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al 324 (519)
||..|.+ .|++.|||.+|....+.....+...|-.+|.|.+. ..++++.+.+.+++..|++.|++.. ++.++|
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 8999988 89999999999875445678899999999999876 3458889999999999999998776 789999
Q ss_pred HHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh
Q 010064 325 SILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY 378 (519)
Q Consensus 325 ~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~ 378 (519)
++||||+. +++.++.+++ .|+++.|..+++ +.+..+.+-++.+|.||....+
T Consensus 552 GTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIh-SKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWD-DGAVPMLRNLIH-SKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHh-cccHHHHHHHHh-hhhhhhhhhHHHHHHHHhcCCc
Confidence 99999998 8999999999 799999999999 6788888999999999988754
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=5e-18 Score=186.59 Aligned_cols=304 Identities=19% Similarity=0.250 Sum_probs=255.0
Q ss_pred hHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh
Q 010064 104 SKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML 183 (519)
Q Consensus 104 ~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL 183 (519)
.....+..|-+++...+|+..|.+.|+ ++.|++++.+++.+.+..|++.|.||+.+ +..|..++..|++|.|+.+|
T Consensus 306 llil~v~fLkkLSi~~ENK~~m~~~gi---V~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL 381 (708)
T PF05804_consen 306 LLILAVTFLKKLSIFKENKDEMAESGI---VEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELL 381 (708)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC---HHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHh
Confidence 344555678889999999999999998 99999999999999999999999999965 59999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChH
Q 010064 184 DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVP 263 (519)
Q Consensus 184 ~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~ 263 (519)
..+ ..+..++.+|.||+. ++++|..+...+.+|.|++++-... +..+...+++++.||+.++.+...|.+.++++
T Consensus 382 ~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~--~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~ 456 (708)
T PF05804_consen 382 KDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENS--EEEVQLELIALLINLALNKRNAQLMCEGNGLQ 456 (708)
T ss_pred CCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCC--CccccHHHHHHHHHHhcCHHHHHHHHhcCcHH
Confidence 754 466789999999999 5999999999999999999766542 45666677888999999988888888877788
Q ss_pred HHHHHhhcC----------------------------------CCCCCHHHHHHHHHHHHHhcCCCccHHHHH-hcCcHH
Q 010064 264 FLVKTLKNS----------------------------------DKKVSPQAKQDALRALYNLSIFPSNISFIL-ETDLIR 308 (519)
Q Consensus 264 ~LV~lL~~~----------------------------------~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~-~~g~v~ 308 (519)
.|+...... ....+.+....++.+|+||...+.....++ +.+.+|
T Consensus 457 ~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp 536 (708)
T PF05804_consen 457 SLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLP 536 (708)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHH
Confidence 776543221 122578899999999999998765555555 569999
Q ss_pred HHHHHcC----CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCC-CCHHHHHHHHHHHHHHhcCChhhHHH
Q 010064 309 YLLEMLG----DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWT-DSPGCQEKASYVLMVMAHKSYGDRQA 383 (519)
Q Consensus 309 ~Lv~lL~----~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~nL~~~~~~~~~~ 383 (519)
.|..+|. ++++..+++..++.++.++++...+.. .|.++.|+++|... ++.+..-+.+++++.|..+ ++.|+.
T Consensus 537 ~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~-sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ 614 (708)
T PF05804_consen 537 WLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAK-SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREV 614 (708)
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHh-CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHH
Confidence 9999994 346888999999999999999888888 79999999999733 4577888999999999998 456776
Q ss_pred HH-HcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 384 MI-EAGIASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 384 i~-~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
++ +.+++.-|++++.+.++.+++-|-.+|..+.+.
T Consensus 615 ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 615 LLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 65 578889999999999999999999999999954
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.78 E-value=3.7e-18 Score=183.80 Aligned_cols=287 Identities=23% Similarity=0.226 Sum_probs=229.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh--hHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL--NKAA 211 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~--nk~~ 211 (519)
++..+.+|.+.++.+|..|+..|..+|+.+.+.|..+...|+|+.||.+|++.+.++|..|+++|.||..++.. ||..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999998766 9999
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC-----C-C----CCCHHHH
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS-----D-K----KVSPQAK 281 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~-----~-~----~~~~~~~ 281 (519)
|.+.++|+.++++++... |.++++.+.++|||||.++..|..|+.. ++..|-.-+-.. . + ..+.++.
T Consensus 315 i~~~~Gv~~l~~~Lr~t~--D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQ--DDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhcCChHHHHHHHHhhc--chHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceee
Confidence 999999999999999632 7999999999999999998888887654 355554433211 0 0 1246788
Q ss_pred HHHHHHHHHhcC-CCccHHHHHhc-CcHHHHHHHcC--------CHHHHHHHHHHHHHhcCCcc------cHHHHh----
Q 010064 282 QDALRALYNLSI-FPSNISFILET-DLIRYLLEMLG--------DMELSERILSILSNLVSTPE------GRKAIS---- 341 (519)
Q Consensus 282 ~~A~~aL~nLs~-~~~n~~~l~~~-g~v~~Lv~lL~--------~~~v~~~Al~~L~nLs~~~e------~r~~i~---- 341 (519)
.+++.+|.|++. +.+.+..+.+. |.|..|+..+. |...+++|+.+|.||+.--+ .+..+.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 999999999998 55688888765 99999998872 34588999999999986111 000000
Q ss_pred -------------------------------h------------cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh
Q 010064 342 -------------------------------R------------VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY 378 (519)
Q Consensus 342 -------------------------------~------------~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~ 378 (519)
. ++.+|..-..+|..+.++.+.|.++++|-||+.+..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0 011222323344445678899999999999999754
Q ss_pred h----hHHHH-HHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCcc
Q 010064 379 G----DRQAM-IEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQV 423 (519)
Q Consensus 379 ~----~~~~i-~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~~ 423 (519)
. .+..+ .++.+.|.|++|+..++..+..-+..+|.||+.|.-.+.
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ 601 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKE 601 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhh
Confidence 2 24555 688999999999999999999999999999997765444
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.76 E-value=2.5e-17 Score=183.36 Aligned_cols=261 Identities=21% Similarity=0.227 Sum_probs=224.1
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC------------CCHHHHHHHHHHHHHhcCCChhhHHHHHhc-C
Q 010064 150 REAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF------------QLADSQISSLYALLNLGIGNDLNKAAIVKA-G 216 (519)
Q Consensus 150 ~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s------------~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a-G 216 (519)
+.|+..|-+++++ +++|..+.+.|++.++-.+|.. .+..++..+.+||.||.+++..||..+... |
T Consensus 316 caA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 316 CAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 4677888888865 6999999999999999988853 124589999999999999999999999875 9
Q ss_pred cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC
Q 010064 217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF 294 (519)
Q Consensus 217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~ 294 (519)
.+..+|..|.+. ..++....+++|.|||+..+. |..+-+.|-|..|+...-.. .........+.|||||+.+
T Consensus 395 fMeavVAQL~s~---peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~---~kEsTLKavLSALWNLSAH 468 (2195)
T KOG2122|consen 395 FMEAVVAQLISA---PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN---KKESTLKAVLSALWNLSAH 468 (2195)
T ss_pred HHHHHHHHHhcC---hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh---cccchHHHHHHHHhhhhhc
Confidence 999999999987 678999999999999987643 77777799999998855442 4556788899999999987
Q ss_pred C-ccHHHHHhc-CcHHHHHHHcCCH------HHHHHHHHHHHHhcC----CcccHHHHhhcCCcchhhhhhccCCCCHHH
Q 010064 295 P-SNISFILET-DLIRYLLEMLGDM------ELSERILSILSNLVS----TPEGRKAISRVPDAFPILVDVLNWTDSPGC 362 (519)
Q Consensus 295 ~-~n~~~l~~~-g~v~~Lv~lL~~~------~v~~~Al~~L~nLs~----~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~ 362 (519)
. +|+..|+.. |++.+|+.+|... .+.+.+-++|.|.++ ...+|+.+.+ ..++..|+++|+ +.+-.+
T Consensus 469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-~NCLq~LLQ~LK-S~SLTi 546 (2195)
T KOG2122|consen 469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR-HNCLQTLLQHLK-SHSLTI 546 (2195)
T ss_pred ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH-hhHHHHHHHHhh-hcceEE
Confidence 6 599999876 9999999999532 389999999999987 5667777777 799999999999 678889
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 010064 363 QEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK 419 (519)
Q Consensus 363 qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~ 419 (519)
..++|++||||...+++.++.+++.|+|+.|..|+.+....+-.-+..+|.||-..+
T Consensus 547 VSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 547 VSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred eecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999888888889999988654
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2.2e-14 Score=140.80 Aligned_cols=273 Identities=15% Similarity=0.216 Sum_probs=228.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHHHHhcC
Q 010064 139 KDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAAIVKAG 216 (519)
Q Consensus 139 ~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG 216 (519)
.+-.+++......++.+|..++...++.+ +.-+...+|.+|.. ++.++.......+..-|..++.||+.+++.+
T Consensus 114 ~la~~~~~~~l~ksL~al~~lt~~qpdl~----da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 114 ELAESPNESVLKKSLEAINSLTHKQPDLF----DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK 189 (461)
T ss_pred HHhhCCchhHHHHHHHHHHHhhcCCcchh----ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 33345677777889999988886655544 46688889999854 7788888999999999998999999999999
Q ss_pred cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh----------hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064 217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK----------PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR 286 (519)
Q Consensus 217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k----------~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~ 286 (519)
+++.+.+.|.... ...+...+.+++..|..+++.| ..|+..|++..|+..++.. -++.+...++.
T Consensus 190 il~Li~~~l~~~g--k~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~---~dp~~L~~l~~ 264 (461)
T KOG4199|consen 190 ILELILQVLNREG--KTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAG---IDPDSLVSLST 264 (461)
T ss_pred HHHHHHHHHcccC--ccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHcc---CCccHHHHHHH
Confidence 9999998776553 3467777888999988777654 3456778899999999987 67999999999
Q ss_pred HHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH------HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhc-cCCCC
Q 010064 287 ALYNLSIFPSNISFILETDLIRYLLEMLGDME------LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVL-NWTDS 359 (519)
Q Consensus 287 aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~------v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL-~~s~~ 359 (519)
+|..|+..++.+..+.+.|++..|+.++.|.. +...++.+|+.|+.++..+..|++ .|+.+.++.++ .+.++
T Consensus 265 tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~ 343 (461)
T KOG4199|consen 265 TLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALRHSDD 343 (461)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHHcCCC
Confidence 99999999999999999999999999997632 667899999999999999999999 79999999876 45678
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhc-C-CHHHHHHHHHHHHHhhhcCCC
Q 010064 360 PGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLL-G-STLAQKRASRILECLRVDKGK 421 (519)
Q Consensus 360 ~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~-g-s~~~~~~A~~~L~~l~~~~~~ 421 (519)
|.+.++++.+++-||..++++...+++.|+-...++-+.- + ...+|+.|+++++|+....+.
T Consensus 344 p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 344 PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999987766666653 3 457899999999999965443
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=3.2e-14 Score=139.73 Aligned_cols=301 Identities=17% Similarity=0.182 Sum_probs=240.3
Q ss_pred HHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh
Q 010064 106 SEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQ--SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML 183 (519)
Q Consensus 106 ~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~--s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL 183 (519)
.+.|.+|..+.+.... +.++.+ +..++++|. .++.++-......++.-|..++.+|..+.+.++.+.+...|
T Consensus 125 ~ksL~al~~lt~~qpd---l~da~g---~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l 198 (461)
T KOG4199|consen 125 KKSLEAINSLTHKQPD---LFDAEA---MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVL 198 (461)
T ss_pred HHHHHHHHHhhcCCcc---hhcccc---HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH
Confidence 3445555555433221 224444 777777775 45667778888999998877889999999999999999777
Q ss_pred cC-CCHHHHHHHHHHHHHhcCCCh---------hhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh
Q 010064 184 DF-QLADSQISSLYALLNLGIGND---------LNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK 253 (519)
Q Consensus 184 ~s-~~~~~~~~a~~aL~NLa~~~~---------~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k 253 (519)
.. +...+.....++++-|..+++ .+...|.+.|++..|++.++... ++.+...+..+|..|+..++.+
T Consensus 199 ~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~--dp~~L~~l~~tl~~lAVr~E~C 276 (461)
T KOG4199|consen 199 NREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI--DPDSLVSLSTTLKALAVRDEIC 276 (461)
T ss_pred cccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC--CccHHHHHHHHHHHHHHHHHHH
Confidence 55 444677889999999997532 24667888899999999998765 5777888889999999999999
Q ss_pred hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc----CCHHHHHHHHHHHHH
Q 010064 254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML----GDMELSERILSILSN 329 (519)
Q Consensus 254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL----~~~~v~~~Al~~L~n 329 (519)
..|.+.|++..|+.++.+...++.......++..|+-|+.+++++..+++.|+.+.++.++ .+|.+.+.++.+++-
T Consensus 277 ~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~ 356 (461)
T KOG4199|consen 277 KSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISI 356 (461)
T ss_pred HHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 9999999999999999874122233456788999999999999999999999999999887 567799999999999
Q ss_pred hcC-CcccHHHHhhcCCcchhhhhhccCC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHH
Q 010064 330 LVS-TPEGRKAISRVPDAFPILVDVLNWT-DSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKR 407 (519)
Q Consensus 330 Ls~-~~e~r~~i~~~~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~ 407 (519)
|+. .|++-..+++ .|+-...++.|+.+ ....+|.+|||.+.||...+.+++..++..| +..|+.......+.....
T Consensus 357 l~LR~pdhsa~~ie-~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~ 434 (461)
T KOG4199|consen 357 LCLRSPDHSAKAIE-AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAA 434 (461)
T ss_pred HHhcCcchHHHHHh-cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHH
Confidence 998 8888888888 67777888888733 3457899999999999999888899888877 677788888888888888
Q ss_pred HHHHHHHhh
Q 010064 408 ASRILECLR 416 (519)
Q Consensus 408 A~~~L~~l~ 416 (519)
|..+|+-|-
T Consensus 435 akaALRDLG 443 (461)
T KOG4199|consen 435 AKAALRDLG 443 (461)
T ss_pred HHHHHHhcC
Confidence 888887654
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.64 E-value=1.9e-14 Score=155.46 Aligned_cols=309 Identities=19% Similarity=0.188 Sum_probs=238.4
Q ss_pred hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hHHHHHhcCCHHH
Q 010064 102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSE--TRVTLAMLGAIPP 178 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~--~r~~l~~~G~i~~ 178 (519)
+..|..+..-+-.++.. +..+..++..|+ ++.||.+|.+.+.+++..|+.+|+||...+.. ++..+.+.++|+.
T Consensus 247 ~~~qsnaaaylQHlcfgd~~ik~~vrqlgg---I~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~ 323 (717)
T KOG1048|consen 247 PSVQSNAAAYLQHLCFGDNKIKSRVRQLGG---IPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPT 323 (717)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHhcc---HHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHH
Confidence 44555555555556655 456666766777 99999999999999999999999999988654 8999999999999
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCC-----CC------CHHHHHHHHHHHHHh
Q 010064 179 LAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPV-----AP------NPSVSEAIVANFLGL 246 (519)
Q Consensus 179 Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~-----~~------~~~~~~~a~~aL~~L 246 (519)
++++|+. .|.++++..+.+|+||+.. +..|..|+.. +++.|-.-.-.+- ++ +..+-..++++|.|+
T Consensus 324 l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNl 401 (717)
T KOG1048|consen 324 LVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNL 401 (717)
T ss_pred HHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccc
Confidence 9999987 8999999999999999994 7778777765 5555555332211 00 133445667777777
Q ss_pred cc-CCCChhhhhh-CCChHHHHHHhhcC----------------------------------------------------
Q 010064 247 SA-LDSNKPIIGS-SGAVPFLVKTLKNS---------------------------------------------------- 272 (519)
Q Consensus 247 S~-~~~~k~~I~~-~gai~~LV~lL~~~---------------------------------------------------- 272 (519)
+. ..+.|..+.+ .|.|..|+..++..
T Consensus 402 Ss~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~ 481 (717)
T KOG1048|consen 402 SSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAES 481 (717)
T ss_pred cchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccc
Confidence 65 3455666665 56677776665421
Q ss_pred ----------------------------------------------CCCCCHHHHHHHHHHHHHhcCCCc-----cHHHH
Q 010064 273 ----------------------------------------------DKKVSPQAKQDALRALYNLSIFPS-----NISFI 301 (519)
Q Consensus 273 ----------------------------------------------~~~~~~~~~~~A~~aL~nLs~~~~-----n~~~l 301 (519)
..+.+..+.+.++.+|-||+.... .+..+
T Consensus 482 ~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v 561 (717)
T KOG1048|consen 482 VGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAV 561 (717)
T ss_pred cccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhh
Confidence 012566678888999999986542 33334
Q ss_pred -HhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCC-----HHHHHHHHHHHHHH
Q 010064 302 -LETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDS-----PGCQEKASYVLMVM 373 (519)
Q Consensus 302 -~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~-----~~~qe~A~~~L~nL 373 (519)
....++++|+.+|. ++.++..++.+|.||+.+..++..|.. ++++.|++.|..+.. .++...++.+|.|+
T Consensus 562 ~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~ni 639 (717)
T KOG1048|consen 562 FRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNI 639 (717)
T ss_pred hhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHH
Confidence 56789999999994 556999999999999999988888874 799999999975444 67888899999999
Q ss_pred hcCChhhHHHHHHcCcHHHHHHHhhcC-CHHHHHHHHHHHHHhhh
Q 010064 374 AHKSYGDRQAMIEAGIASALLELTLLG-STLAQKRASRILECLRV 417 (519)
Q Consensus 374 ~~~~~~~~~~i~~~G~i~~Ll~Ll~~g-s~~~~~~A~~~L~~l~~ 417 (519)
...+..+...+++.+.++.|+-+.... ++++-+.|...|..|-.
T Consensus 640 v~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 640 VRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 999899999999999999999998864 67888888888887763
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.53 E-value=1.3e-12 Score=128.48 Aligned_cols=195 Identities=21% Similarity=0.268 Sum_probs=168.1
Q ss_pred HhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC
Q 010064 171 AMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL 249 (519)
Q Consensus 171 ~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~ 249 (519)
.+.+-++.|+.+|+. .++.+++.++.++.|.+. .+.++..|.+.|+++.+..++.++ ++.+++.|+.+|.|++.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p---~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDP---NPSVREKALNALNNLSVN 84 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCC---ChHHHHHHHHHHHhcCCC
Confidence 356678999999986 789999999999999988 599999999999999999999999 899999999999999999
Q ss_pred CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc--CCHHHHHHHHHHH
Q 010064 250 DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML--GDMELSERILSIL 327 (519)
Q Consensus 250 ~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL--~~~~v~~~Al~~L 327 (519)
.+++..|-. .++.+++...+. ..+..++..++.+|.||+..+++...+. +.++.|+.+| ++..++..++++|
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHH
Confidence 999888743 578887765552 2477889999999999998877766553 4799999998 4566999999999
Q ss_pred HHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 328 SNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 328 ~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
.||+.++...+.+.. ..++..|+.+++.+.+.++...+..++.||..+
T Consensus 159 ~nLS~np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 159 VNLSENPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHhccCHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999999888888 589999999999666778888899999999653
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=3.8e-12 Score=125.28 Aligned_cols=190 Identities=22% Similarity=0.237 Sum_probs=165.2
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHH
Q 010064 132 EELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKA 210 (519)
Q Consensus 132 ~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~ 210 (519)
+.++.|+..|.. .++..+..|..++.+.+. .+.++..+.+.|+++.+..+|..+++.+++.|+++|.|++. +.+|+.
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~en~~ 89 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-NDENQE 89 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-ChhhHH
Confidence 348999999984 578899999999999884 46999999999999999999999999999999999999999 588888
Q ss_pred HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064 211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN 290 (519)
Q Consensus 211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~n 290 (519)
.|-. .++.+++.+.+... +..++..++.+|.+|+..++.+..+.. .++.++.+|.. ++..++..++.+|.|
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~l-ns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~----G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPL-NSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSS----GSEKTKVQVLKVLVN 160 (254)
T ss_pred HHHH--HHHHHHHHHhcCCC-CCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHc----CChHHHHHHHHHHHH
Confidence 7744 47777775554322 678899999999999998888887754 69999999998 799999999999999
Q ss_pred hcCCCccHHHHHhcCcHHHHHHHcCC---HHHHHHHHHHHHHhcC
Q 010064 291 LSIFPSNISFILETDLIRYLLEMLGD---MELSERILSILSNLVS 332 (519)
Q Consensus 291 Ls~~~~n~~~l~~~g~v~~Lv~lL~~---~~v~~~Al~~L~nLs~ 332 (519)
||.++++...++.++++..++.++.. .++...++.++.||..
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999953 4588899999999976
No 19
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.8e-12 Score=132.43 Aligned_cols=294 Identities=18% Similarity=0.212 Sum_probs=226.6
Q ss_pred HHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHH
Q 010064 110 LDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLAD 189 (519)
Q Consensus 110 ~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~ 189 (519)
.-|+|++++-.....++.-.. +..||+.|...+.+........|..|+.-+ +++..+.+.|.|+.|+++....+++
T Consensus 285 ylLlNlAed~~~ElKMrrkni---V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~d 360 (791)
T KOG1222|consen 285 YLLLNLAEDISVELKMRRKNI---VAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPD 360 (791)
T ss_pred HHHHHHhhhhhHHHHHHHHhH---HHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHH
Confidence 358899999888888877777 999999999999999999999999999776 8999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHh
Q 010064 190 SQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTL 269 (519)
Q Consensus 190 ~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL 269 (519)
++...++.|+||+.+ ..++..++..|.+|.|..++.+. .-...|...|..+|.++..|..+....+|+.|.+.+
T Consensus 361 L~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d-----~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v 434 (791)
T KOG1222|consen 361 LRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSD-----TKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDV 434 (791)
T ss_pred HHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCc-----ccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999995 88999999999999999999876 334567778999999999999999999999999877
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH-------------------------------------
Q 010064 270 KNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLE------------------------------------- 312 (519)
Q Consensus 270 ~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~------------------------------------- 312 (519)
-++ .+..+-...+..-.||+.+..|.+.+++..++..|+.
T Consensus 435 ~~~---~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~ 511 (791)
T KOG1222|consen 435 LSG---TGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAG 511 (791)
T ss_pred Hhc---CCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 664 4555555445455678777777666655555444432
Q ss_pred HcC---CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 010064 313 MLG---DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWT-DSPGCQEKASYVLMVMAHKSYGDRQAMIEAG 388 (519)
Q Consensus 313 lL~---~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G 388 (519)
+++ +..+..+++++|+||...+-.-..|......+|-+-..|.-. ...+++-..+..++.++.+ ..+...+..+|
T Consensus 512 i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~ 590 (791)
T KOG1222|consen 512 IAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAK 590 (791)
T ss_pred HhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccc
Confidence 111 122566899999999986555556665578899888888721 2345666666666666664 44455566899
Q ss_pred cHHHHHHHhhc---CCHHHHHHHHHHHHHhhh
Q 010064 389 IASALLELTLL---GSTLAQKRASRILECLRV 417 (519)
Q Consensus 389 ~i~~Ll~Ll~~---gs~~~~~~A~~~L~~l~~ 417 (519)
+|+.|++|+.. .+.-+-+-.-..++.++.
T Consensus 591 ~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H 622 (791)
T KOG1222|consen 591 LIDTLIELLQACQEDDEFVVQIIYVFLQFLKH 622 (791)
T ss_pred cHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 99999999984 344444445555666664
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.43 E-value=6.2e-11 Score=128.53 Aligned_cols=273 Identities=17% Similarity=0.192 Sum_probs=218.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
.+.|...|.++++.+|..+++.|.++..++......+.+.++++.++.+|.+++..+...|..+|.+|+.. +..-..++
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~ 157 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLF 157 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHh
Confidence 67788889999999999999999999988766677778899999999999999999999999999999985 66667788
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
..+.++.|..++..+ +..++..+..++.+++... +....+.++|.++.++..+.+ .+.-++.+++.+|..|+
T Consensus 158 ~~~~~~~L~~l~~~~---~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~----dDiLvqlnalell~~La 230 (503)
T PF10508_consen 158 DSNLLSKLKSLMSQS---SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS----DDILVQLNALELLSELA 230 (503)
T ss_pred CcchHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC----ccHHHHHHHHHHHHHHH
Confidence 999999999999986 6788888888888887554 456677779999999999988 79999999999999999
Q ss_pred CCCccHHHHHhcCcHHHHHHHcC----CH--H--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHH
Q 010064 293 IFPSNISFILETDLIRYLLEMLG----DM--E--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQE 364 (519)
Q Consensus 293 ~~~~n~~~l~~~g~v~~Lv~lL~----~~--~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe 364 (519)
..+.+...+.+.|+++.|+.++. |+ . ..-..+...+||+.... ...+...+.++..|.+++. +.++..+.
T Consensus 231 ~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~-~~v~~~~p~~~~~l~~~~~-s~d~~~~~ 308 (503)
T PF10508_consen 231 ETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSP-QEVLELYPAFLERLFSMLE-SQDPTIRE 308 (503)
T ss_pred cChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHhC-CCChhHHH
Confidence 98889999999999999999994 33 1 23344577788887411 1212222346666777777 67899999
Q ss_pred HHHHHHHHHhcCChhhHHHH-HH-cCcHH----HHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 365 KASYVLMVMAHKSYGDRQAM-IE-AGIAS----ALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 365 ~A~~~L~nL~~~~~~~~~~i-~~-~G~i~----~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
.|..+++.++... +.++.+ .. .+.++ ..-.....++..+|.++..+|..+-.
T Consensus 309 ~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 309 VAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 9999999999764 445555 43 33444 34444446788999999999999953
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.34 E-value=1.3e-10 Score=117.73 Aligned_cols=285 Identities=15% Similarity=0.167 Sum_probs=226.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC----C---CHHHHHHHHHHHHHhcCC
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF----Q---LADSQISSLYALLNLGIG 204 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s----~---~~~~~~~a~~aL~NLa~~ 204 (519)
+.++.|.+..++++.++-...+++|.|+|.++.++|..+.+.|+-..++.+|+. + +.+....+...|.|...+
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 448888888888888889999999999999999999999999998888888875 2 346778888999999999
Q ss_pred ChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCC-hhhhhhCCChHHHHHHhhcCCCCCCHHHHH
Q 010064 205 NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSN-KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQ 282 (519)
Q Consensus 205 ~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~-k~~I~~~gai~~LV~lL~~~~~~~~~~~~~ 282 (519)
++.-++.+.+.|+++.|...+.-+.. +.+..+......++|... .++ .+...+...+-.|++++.+. ..++...
T Consensus 167 ~~~l~aq~~~~gVl~tL~~~~~I~~q-Naa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~---v~~d~~e 242 (604)
T KOG4500|consen 167 SRELRAQVADAGVLNTLAITYWIDWQ-NAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSM---VREDIDE 242 (604)
T ss_pred cHHHHHHHHhcccHHHHHHHhhcccc-cHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHh---hccchhh
Confidence 99999999999999999998765433 677777777777765432 232 45555677788889998874 7788899
Q ss_pred HHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC-H------H---HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhh
Q 010064 283 DALRALYNLSIFPSNISFILETDLIRYLLEMLGD-M------E---LSERILSILSNLVSTPEGRKAISRVPDAFPILVD 352 (519)
Q Consensus 283 ~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~-~------~---v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~ 352 (519)
-....|+..+.++.-+..+.+.|.+..++.++.. + + ....++....-|...++.-+.+...+.++..++.
T Consensus 243 M~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 243 MIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 9999999999999888889999999999988832 1 1 2234444444444555555555553558888888
Q ss_pred hccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh-----cCCHHHHHHHHHHHHHhhhcCCCc
Q 010064 353 VLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTL-----LGSTLAQKRASRILECLRVDKGKQ 422 (519)
Q Consensus 353 lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~-----~gs~~~~~~A~~~L~~l~~~~~~~ 422 (519)
.+. +++...+..++-++.|+++. ..++-.+++.|.+..|++++. +|+...|..+..+|++|.-+-..+
T Consensus 323 w~~-S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 323 WFR-SDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred Hhc-CCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 888 67888999999999999987 577888999999999999987 477889999999999999654333
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.31 E-value=5.6e-10 Score=121.13 Aligned_cols=268 Identities=15% Similarity=0.143 Sum_probs=213.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcC
Q 010064 137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAG 216 (519)
Q Consensus 137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG 216 (519)
++..|...+.+.-..++..|..+.... ..... ..+..+.|...|.++++.++..+++.|.+++.+++.....+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 667777777777778888898877543 33332 455788999999999999999999999999987666677777899
Q ss_pred cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 010064 217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS 296 (519)
Q Consensus 217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~ 296 (519)
+++.++.++.++ +..+...|+.+|..++..+..-..+...+.+..|..++.. .+..++..+..++.+++...+
T Consensus 120 l~~~i~~~L~~~---d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~----~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 120 LLPLIIQCLRDP---DLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ----SSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred HHHHHHHHHcCC---cHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcCH
Confidence 999999999999 8999999999999999988777777788889999999987 577889999999999987655
Q ss_pred -cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCC-CHHH----HHHHHH
Q 010064 297 -NISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTD-SPGC----QEKASY 368 (519)
Q Consensus 297 -n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~-~~~~----qe~A~~ 368 (519)
....+.+.|.++.++..|.++| ++..|+.+|..|+..+.+.+-+.+ .|+++.|+.++.... +|.. --....
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~-~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~ 271 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ-QGIFDKLSNLLQDSEEDPRLSSLLLPGRMK 271 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh-CCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence 6667778899999999998766 788999999999999999999999 799999999997432 3311 122345
Q ss_pred HHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 369 VLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 369 ~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
..++++...+...-. .-...+..|.+++...++..+..|..+|..+.
T Consensus 272 f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 272 FFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred HHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 667777642221111 11335556667777889999999999999888
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.29 E-value=6.1e-11 Score=102.36 Aligned_cols=117 Identities=31% Similarity=0.421 Sum_probs=107.6
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc
Q 010064 169 TLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA 248 (519)
Q Consensus 169 ~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~ 248 (519)
.+.+.|+++.|+++|++++..++..++++|.|++.++++....+++.|++|.|+.++.++ ++.++..++++|.+++.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~---~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE---DEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC---CHHHHHHHHHHHHHHcc
Confidence 356889999999999999999999999999999998899999999999999999999998 89999999999999998
Q ss_pred CCC-ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 249 LDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 249 ~~~-~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
..+ .+..+.+.|+++.|++++.. .+..++..++++|.||+
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~----~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDS----SNEDIQKNATGALSNLA 119 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhc----CCHHHHHHHHHHHHHhh
Confidence 764 45666789999999999998 68999999999999987
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.26 E-value=1.6e-10 Score=99.72 Aligned_cols=117 Identities=26% Similarity=0.389 Sum_probs=107.9
Q ss_pred HHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 010064 125 KKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIG 204 (519)
Q Consensus 125 i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~ 204 (519)
+.+.|. ++.+++.|.+++...+..|+.+|.+++..+++.+..+.+.|+++.|+.+|.++++.++..++++|.||+.+
T Consensus 3 ~~~~~~---i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 3 VIQAGG---LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred HHHcCC---hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 345666 99999999999999999999999999988788999999999999999999999999999999999999998
Q ss_pred ChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 205 NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS 247 (519)
Q Consensus 205 ~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS 247 (519)
.+.....+.+.|+++.|++++... +..+++.++++|.+|+
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~---~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSS---NEDIQKNATGALSNLA 119 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcC---CHHHHHHHHHHHHHhh
Confidence 777888889999999999999998 8999999999999885
No 25
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.22 E-value=1.3e-09 Score=114.04 Aligned_cols=279 Identities=14% Similarity=0.043 Sum_probs=209.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAA 211 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~ 211 (519)
.+.+++.+|..++.-.+..|+..|..|..............-.+..|...|++ .+...+..|+.+|.+|... ++.|..
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~ 180 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFA 180 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHH
Confidence 47788888888888899999999999775432211111111133455566655 3467788888999999984 999999
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
+.+.++++.|+.+|+.... +..++-.++-++|-||.+++....+...+.|+.|+.+++.. ...++.+-++.+|.||
T Consensus 181 f~~~~~v~~L~~~L~~~~~-~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nl 256 (429)
T cd00256 181 FVLADGVPTLVKLLSNATL-GFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNL 256 (429)
T ss_pred HHHccCHHHHHHHHhhccc-cHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Confidence 9999999999999987521 45778888999999999988777776789999999999985 6788999999999999
Q ss_pred cCCC-------ccHHHHHhcCcHHHHHHHc----CCHHH-------HHHHHHHHHHhcCCcccHHHHhh-----------
Q 010064 292 SIFP-------SNISFILETDLIRYLLEML----GDMEL-------SERILSILSNLVSTPEGRKAISR----------- 342 (519)
Q Consensus 292 s~~~-------~n~~~l~~~g~v~~Lv~lL----~~~~v-------~~~Al~~L~nLs~~~e~r~~i~~----------- 342 (519)
...+ .....+++.|+.+.+-.+. .|+++ .+.--..+..|++.++.+.++-.
T Consensus 257 l~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~s 336 (429)
T cd00256 257 ISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKS 336 (429)
T ss_pred hhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCC
Confidence 8753 2345566777766554444 35542 22333334555655555554431
Q ss_pred --------------cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064 343 --------------VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRA 408 (519)
Q Consensus 343 --------------~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A 408 (519)
.-..+..|+++|..+++|.+..-||.=++.++...|..|..+-+.|+=..+++|+.++++.++..|
T Consensus 337 e~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eA 416 (429)
T cd00256 337 EKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEA 416 (429)
T ss_pred chHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHH
Confidence 123468899999656778888888999999999877788888899999999999999999999999
Q ss_pred HHHHHHhh
Q 010064 409 SRILECLR 416 (519)
Q Consensus 409 ~~~L~~l~ 416 (519)
..+++.|-
T Consensus 417 L~avQklm 424 (429)
T cd00256 417 LLAVQKLM 424 (429)
T ss_pred HHHHHHHH
Confidence 99999874
No 26
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=7.9e-10 Score=113.35 Aligned_cols=253 Identities=18% Similarity=0.175 Sum_probs=191.5
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCC
Q 010064 150 REAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPV 229 (519)
Q Consensus 150 ~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~ 229 (519)
..|+..|-+|+. +......+.....|..||+.|+..+.++.......|..|+. ..+||..+.+.|+|..|++++...
T Consensus 281 rva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~- 357 (791)
T KOG1222|consen 281 RVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQ- 357 (791)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCC-
Confidence 446677888984 45677778888999999999999999999999999999999 599999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHH
Q 010064 230 APNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRY 309 (519)
Q Consensus 230 ~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~ 309 (519)
+++++...+..|+|||.+..+++.+++.|.+|.|+.++.+. + -..-|+..|+.++.+++.+.++.-+.+|+.
T Consensus 358 --h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d----~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~ 429 (791)
T KOG1222|consen 358 --HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD----T--KHGIALNMLYHLSCDDDAKAMFAYTDCIKL 429 (791)
T ss_pred --CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc----c--cchhhhhhhhhhccCcHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999773 2 234588899999999999999888899998
Q ss_pred HHHHc--C-CHHHHHH--------------------------------------HHHHHHHhcCCcc-cHHHHhhcCCcc
Q 010064 310 LLEML--G-DMELSER--------------------------------------ILSILSNLVSTPE-GRKAISRVPDAF 347 (519)
Q Consensus 310 Lv~lL--~-~~~v~~~--------------------------------------Al~~L~nLs~~~e-~r~~i~~~~g~i 347 (519)
|...+ + +.++... -...++|++.++. .+..+++ .+
T Consensus 430 lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid---yv 506 (791)
T KOG1222|consen 430 LMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID---YV 506 (791)
T ss_pred HHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH---HH
Confidence 88655 1 1112222 2334445554332 2222333 45
Q ss_pred hhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCC--HHHHHHHHHHHHHhh
Q 010064 348 PILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGS--TLAQKRASRILECLR 416 (519)
Q Consensus 348 ~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs--~~~~~~A~~~L~~l~ 416 (519)
..|..++...++...--++.++|.||+...-.+.+.+.+...||-+-..+..|. .+.+-....++.-++
T Consensus 507 gdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a 577 (791)
T KOG1222|consen 507 GDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA 577 (791)
T ss_pred HHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh
Confidence 566666664445566677888888888865666777778889998888888653 233434444444333
No 27
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.19 E-value=1.3e-09 Score=110.68 Aligned_cols=311 Identities=15% Similarity=0.055 Sum_probs=232.0
Q ss_pred hhHHHHHHHHHcccC-ChhhHHHHHhcchhHHHHHHHHHhcCCCH----HHHHHHHHHHHHHhccChhhHHHHHhcCCHH
Q 010064 103 VSKSEKLLDLLNLAE-GEAASEIKKKEEALEELKIVVKDLQSESE----EQRREAASKVRSLAKENSETRVTLAMLGAIP 177 (519)
Q Consensus 103 ~~~~~~l~aLl~ls~-~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~----~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~ 177 (519)
..-.+..++|-|++. +++++..+...|+...+-.+++...+.+. +.-..+...|.|..-++...+..+++.|+++
T Consensus 102 ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~ 181 (604)
T KOG4500|consen 102 EVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLN 181 (604)
T ss_pred cHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHH
Confidence 334455788999975 46788888787773333333333333322 3334566889997777789999999999999
Q ss_pred HHHHhhc--CCCHHHHHHHHHHHHHhcCCChhh-HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChh
Q 010064 178 PLAGMLD--FQLADSQISSLYALLNLGIGNDLN-KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKP 254 (519)
Q Consensus 178 ~Lv~lL~--s~~~~~~~~a~~aL~NLa~~~~~n-k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~ 254 (519)
.|...+. ..+.+..+..+...+||..--.++ +....++..+.-|++++.+.. .++..+-+.-+|...+.++..|-
T Consensus 182 tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v--~~d~~eM~feila~~aend~Vkl 259 (604)
T KOG4500|consen 182 TLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMV--REDIDEMIFEILAKAAENDLVKL 259 (604)
T ss_pred HHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhh--ccchhhHHHHHHHHHhcCcceee
Confidence 9998874 467888888888888887532333 555666788888888887653 46777877778888888889999
Q ss_pred hhhhCCChHHHHHHhhcC-C---CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcC-cHHHHHHHcCC--HHHHHHHHHHH
Q 010064 255 IIGSSGAVPFLVKTLKNS-D---KKVSPQAKQDALRALYNLSIFPSNISFILETD-LIRYLLEMLGD--MELSERILSIL 327 (519)
Q Consensus 255 ~I~~~gai~~LV~lL~~~-~---~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g-~v~~Lv~lL~~--~~v~~~Al~~L 327 (519)
.+++.|.+..++.+++.- + +++.......++....-|..+++.-+.+...+ .+..++.-+.+ .+....+.-++
T Consensus 260 ~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~Lai 339 (604)
T KOG4500|consen 260 SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAI 339 (604)
T ss_pred ehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 999999999999998872 0 11112223334444445556666666677666 78888888854 45788888899
Q ss_pred HHhcCCcccHHHHhhcCCcchhhhhhccC----CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHH
Q 010064 328 SNLVSTPEGRKAISRVPDAFPILVDVLNW----TDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTL 403 (519)
Q Consensus 328 ~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~----s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~ 403 (519)
+|.+..++.+..+++ .+.+..|++.|.. .++-+.|.+++.+|.||+-- -.++..++.+|+.+.++-.+....|.
T Consensus 340 gNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aGvteaIL~~lk~~~pp 417 (604)
T KOG4500|consen 340 GNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAGVTEAILLQLKLASPP 417 (604)
T ss_pred HhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccchHHHHHHHHHhcCCc
Confidence 999999999999999 7999999998853 25678899999999999974 56899999999999999999988888
Q ss_pred HHHHHHHHHHHhhh
Q 010064 404 AQKRASRILECLRV 417 (519)
Q Consensus 404 ~~~~A~~~L~~l~~ 417 (519)
++-.-...|+.+++
T Consensus 418 v~fkllgTlrM~~d 431 (604)
T KOG4500|consen 418 VTFKLLGTLRMIRD 431 (604)
T ss_pred chHHHHHHHHHHHh
Confidence 88777767766664
No 28
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.1e-09 Score=116.49 Aligned_cols=257 Identities=20% Similarity=0.194 Sum_probs=204.4
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhh
Q 010064 132 EELKIVVKDLQSE-SEEQRREAASKVRS-LAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLN 208 (519)
Q Consensus 132 ~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~-La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~n 208 (519)
..++.|++-|... ++..|.+|+..|+. |...+++.-..|.-.-+||.||.+|++ .+.+++..|++||.+|+..-++.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 3577888888766 88899999999998 666666655566566789999999987 67999999999999999888999
Q ss_pred HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL 288 (519)
Q Consensus 209 k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL 288 (519)
-..+++.++||.|++-|..=. ..++.|.++.+|-.+|... -..|.+.|++-..+..|.- -+..+|+.|+.+.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~Ie--yiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDF----FSi~aQR~Alaia 318 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIE--YIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDF----FSIHAQRVALAIA 318 (1051)
T ss_pred hheeecccchHHHHHhhhhhh--hhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 999999999999998655321 6899999999999999753 3456799999999999988 5889999999999
Q ss_pred HHhcCC--CccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC----CcccHHHHhhcCCcchhhhhhccCCCC-
Q 010064 289 YNLSIF--PSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVS----TPEGRKAISRVPDAFPILVDVLNWTDS- 359 (519)
Q Consensus 289 ~nLs~~--~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~----~~e~r~~i~~~~g~i~~Lv~lL~~s~~- 359 (519)
.|.|.. ++.-..+ ..++|.|..+|. |....+.++-++..++. .++--+++.. .|.|....++|.-+..
T Consensus 319 aN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt~t~ 395 (1051)
T KOG0168|consen 319 ANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVTPTI 395 (1051)
T ss_pred HHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcCccc
Confidence 999865 3333333 357898999995 44578888888888875 4455567777 6999999998873311
Q ss_pred --HHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhc
Q 010064 360 --PGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLL 399 (519)
Q Consensus 360 --~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~ 399 (519)
..+-...+..|..||.+++-....+.+.++...|..++..
T Consensus 396 Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 396 LSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred ccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 1223445677778888878888889999999999999884
No 29
>PRK09687 putative lyase; Provisional
Probab=99.09 E-value=7e-09 Score=104.08 Aligned_cols=223 Identities=13% Similarity=0.046 Sum_probs=163.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
+..|+..|.+.+..++..|+..|..+-.. .+++.+..+++++++.++..++++|+.|... ...
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~-~~~----- 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMA-KRC----- 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccc-----
Confidence 67888889999999999999998877532 2567788888999999999999999998763 211
Q ss_pred hcCcHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 214 KAGAVHKMLKL-IESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 214 ~aG~v~~Lv~l-L~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
..-+++.|..+ ++++ ++.++..++.+|-++....... ...++..|...+.. .+..++..++++|.++.
T Consensus 88 ~~~a~~~L~~l~~~D~---d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D----~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 88 QDNVFNILNNLALEDK---SACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFD----KSTNVRFAVAFALSVIN 156 (280)
T ss_pred hHHHHHHHHHHHhcCC---CHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhC----CCHHHHHHHHHHHhccC
Confidence 22367888877 5555 7899999999998875332211 12245556666666 68899999999997653
Q ss_pred CCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064 293 IFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL 370 (519)
Q Consensus 293 ~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L 370 (519)
...+++.|+.+|.|+ +++..|+.+|+++.... +..++.|+.+|. ..++.++..|++.|
T Consensus 157 ----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~-D~~~~VR~~A~~aL 216 (280)
T PRK09687 157 ----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQ-DKNEEIRIEAIIGL 216 (280)
T ss_pred ----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhc-CCChHHHHHHHHHH
Confidence 223788899999654 58899999999883211 245667888887 67889999999999
Q ss_pred HHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 371 MVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 371 ~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
..+-. + .+||.|+..+.++. ++.+|..+|..+-+
T Consensus 217 g~~~~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 217 ALRKD--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred HccCC--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 87543 2 37889999988876 55677777776654
No 30
>PRK09687 putative lyase; Provisional
Probab=99.04 E-value=1.6e-08 Score=101.43 Aligned_cols=227 Identities=15% Similarity=0.089 Sum_probs=172.6
Q ss_pred hcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhcCCC
Q 010064 127 KEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGM-LDFQLADSQISSLYALLNLGIGN 205 (519)
Q Consensus 127 ~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~l-L~s~~~~~~~~a~~aL~NLa~~~ 205 (519)
..+..+.+..+.+++.+++..+|..|++.|..|-... .. ..-+++.|..+ ++.+++.++..++.+|++++..
T Consensus 49 ~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~- 121 (280)
T PRK09687 49 LRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKK- 121 (280)
T ss_pred hcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-
Confidence 3355566788888889999999999999999987433 11 11256788777 5678899999999999999754
Q ss_pred hhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHH
Q 010064 206 DLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDAL 285 (519)
Q Consensus 206 ~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~ 285 (519)
..+. ..-+++.|...+.++ +..++..++.+|..+ ....+++.|+.+|.. .+..++..|+
T Consensus 122 ~~~~----~~~a~~~l~~~~~D~---~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d----~~~~VR~~A~ 180 (280)
T PRK09687 122 NPLY----SPKIVEQSQITAFDK---STNVRFAVAFALSVI----------NDEAAIPLLINLLKD----PNGDVRNWAA 180 (280)
T ss_pred cccc----chHHHHHHHHHhhCC---CHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcC----CCHHHHHHHH
Confidence 2111 112466677778887 789999998888543 234579999999998 6889999999
Q ss_pred HHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHH
Q 010064 286 RALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQ 363 (519)
Q Consensus 286 ~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~q 363 (519)
.+|.++...+ ..+++.|+.+|.|. +++..|...|+.+-. ..+++.|++.|. .++ ++
T Consensus 181 ~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~-~~~--~~ 238 (280)
T PRK09687 181 FALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELK-KGT--VG 238 (280)
T ss_pred HHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHc-CCc--hH
Confidence 9999983222 14667899999754 599999999987431 358899999998 333 66
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh-cCCHHHHHHHHHHHHH
Q 010064 364 EKASYVLMVMAHKSYGDRQAMIEAGIASALLELTL-LGSTLAQKRASRILEC 414 (519)
Q Consensus 364 e~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~-~gs~~~~~~A~~~L~~ 414 (519)
..++.+|.++... -++|.|..++. ++++.++..|.++|..
T Consensus 239 ~~a~~ALg~ig~~-----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 239 DLIIEAAGELGDK-----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHHhcCCH-----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 7788888887752 27999999997 8899999999888763
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.01 E-value=7.6e-09 Score=105.70 Aligned_cols=231 Identities=15% Similarity=0.116 Sum_probs=169.9
Q ss_pred CHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHHHHhc------CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 175 AIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAAIVKA------GAVHKMLKLIESPVAPNPSVSEAIVANFLGL 246 (519)
Q Consensus 175 ~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a------G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L 246 (519)
.+..++.+|+. .++++....+..+..|...++.....+.+. ....++++++..+ +..+...++.+|..|
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~---D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN---DSFIQLKAAFILTSL 132 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S---SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC---CHHHHHHHHHHHHHH
Confidence 35566666653 688899999999999998766666666651 2678899988888 899999999999998
Q ss_pred ccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc------CCH---
Q 010064 247 SALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML------GDM--- 317 (519)
Q Consensus 247 S~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL------~~~--- 317 (519)
....+.+..-...+.++.+++.+.+.....+...+.-|+.+|.+|...+.++..+.+.++++.|..+| ...
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 87766554443467789999988864222344567899999999999999999999999999999999 222
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHH
Q 010064 318 ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG-DRQAMIEAGIASALLEL 396 (519)
Q Consensus 318 ~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~-~~~~i~~~G~i~~Ll~L 396 (519)
.++-.++.++|-|+-+++....+.. .+.++.|+++++.+..+++.+-++.++.||...+.+ ....|+..|+++.+-.|
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 2788999999999999999999988 579999999999778899999999999999987654 77888899988887777
Q ss_pred hhc--CCHHHHHHHH
Q 010064 397 TLL--GSTLAQKRAS 409 (519)
Q Consensus 397 l~~--gs~~~~~~A~ 409 (519)
... ++++..+-..
T Consensus 292 ~~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 292 SERKWSDEDLTEDLE 306 (312)
T ss_dssp HSS--SSHHHHHHHH
T ss_pred hcCCCCCHHHHHHHH
Confidence 664 4676665433
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.94 E-value=1.9e-07 Score=108.27 Aligned_cols=146 Identities=16% Similarity=0.102 Sum_probs=94.8
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHH
Q 010064 220 KMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNIS 299 (519)
Q Consensus 220 ~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~ 299 (519)
.|+..|+++ ++.++..|+.+|..+. ..+.|..++.. .+..++..++.+|..+....
T Consensus 718 ~l~~~L~D~---d~~VR~~Av~aL~~~~-------------~~~~l~~~l~D----~~~~VR~~aa~aL~~~~~~~---- 773 (897)
T PRK13800 718 LFAAALGDP---DHRVRIEAVRALVSVD-------------DVESVAGAATD----ENREVRIAVAKGLATLGAGG---- 773 (897)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHhccc-------------CcHHHHHHhcC----CCHHHHHHHHHHHHHhcccc----
Confidence 344555555 5555555555554431 12345555555 56677777777776664321
Q ss_pred HHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064 300 FILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS 377 (519)
Q Consensus 300 ~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~ 377 (519)
...++.|..++.|+ .++..|+..|.++...+ ..+..|+..|. ++++.++..|+.+|..+...
T Consensus 774 ----~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~-d~d~~VR~~Aa~aL~~l~~~- 837 (897)
T PRK13800 774 ----APAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALR-ASAWQVRQGAARALAGAAAD- 837 (897)
T ss_pred ----chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhc-CCChHHHHHHHHHHHhcccc-
Confidence 12366777777544 47888888887764321 12345667777 56788888888888876532
Q ss_pred hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064 378 YGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415 (519)
Q Consensus 378 ~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l 415 (519)
..++.|+.++.+.++.+|..|..+|..+
T Consensus 838 ----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 838 ----------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 2568999999999999999999999887
No 33
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.86 E-value=4e-08 Score=100.41 Aligned_cols=231 Identities=18% Similarity=0.179 Sum_probs=163.2
Q ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccChhhHHHHHh------cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 010064 132 EELKIVVKDLQ--SESEEQRREAASKVRSLAKENSETRVTLAM------LGAIPPLAGMLDFQLADSQISSLYALLNLGI 203 (519)
Q Consensus 132 ~~l~~Lv~~L~--s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~------~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~ 203 (519)
.....++.+|+ +.+.+.....+..|..+..+++.....+.. .....+++.+++++|.-++..++..|..|..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33444455444 467888899999999998888766666655 2368899999999999999999999999998
Q ss_pred CChhhHHHHHhcCcHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHh------hcCCCCC
Q 010064 204 GNDLNKAAIVKAGAVHKMLKLIESPVA-PNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTL------KNSDKKV 276 (519)
Q Consensus 204 ~~~~nk~~iv~aG~v~~Lv~lL~s~~~-~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL------~~~~~~~ 276 (519)
..+....... .+.++.++.++++... .+...+..++.+|.+|...++.|..+.+.++++.|+.++ .+ ..
T Consensus 135 ~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~---~~ 210 (312)
T PF03224_consen 135 QGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSN---SS 210 (312)
T ss_dssp STTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH------------
T ss_pred cCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCC---CC
Confidence 6444433322 5678888888876321 034456888999999999999999999999999999999 33 36
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC---HHHHHHHHHHHHHhcCCcc--cHHHHhhcCCcchhhh
Q 010064 277 SPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD---MELSERILSILSNLVSTPE--GRKAISRVPDAFPILV 351 (519)
Q Consensus 277 ~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~---~~v~~~Al~~L~nLs~~~e--~r~~i~~~~g~i~~Lv 351 (519)
..+.+-.++.+++-|+-+++....+...+.|+.|+.++.+ +++..-++++|.||..... ....|+. .++ ..++
T Consensus 211 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~-l~~l 288 (312)
T PF03224_consen 211 GIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CGL-LKTL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-H-HHHH
T ss_pred chhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-ccH-HHHH
Confidence 8899999999999999999999999999999999999953 3588899999999999554 7788888 344 4455
Q ss_pred hhccCC--CCHHHHHHHHH
Q 010064 352 DVLNWT--DSPGCQEKASY 368 (519)
Q Consensus 352 ~lL~~s--~~~~~qe~A~~ 368 (519)
+.|... .++++.+.--+
T Consensus 289 ~~L~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 289 QNLSERKWSDEDLTEDLEF 307 (312)
T ss_dssp HHHHSS--SSHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHH
Confidence 555311 46766655433
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.77 E-value=1.6e-06 Score=100.73 Aligned_cols=226 Identities=19% Similarity=0.137 Sum_probs=158.5
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc--------------ChhhHHHHHh------cCCHHHHHHhhcCCCH
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKE--------------NSETRVTLAM------LGAIPPLAGMLDFQLA 188 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~--------------~~~~r~~l~~------~G~i~~Lv~lL~s~~~ 188 (519)
+..+.++.|++.|..++..++..|+..|..+... ++..|...++ .+-...|+..|+++++
T Consensus 649 ~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~ 728 (897)
T PRK13800 649 TPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDH 728 (897)
T ss_pred cchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCH
Confidence 3445578888889888889999888888776421 1122222211 1223344444444455
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHH
Q 010064 189 DSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKT 268 (519)
Q Consensus 189 ~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~l 268 (519)
.++..|+.+|..+ +..+.|..++.++ +..++..++.+|..+... ....++.|..+
T Consensus 729 ~VR~~Av~aL~~~--------------~~~~~l~~~l~D~---~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~l 783 (897)
T PRK13800 729 RVRIEAVRALVSV--------------DDVESVAGAATDE---NREVRIAVAKGLATLGAG--------GAPAGDAVRAL 783 (897)
T ss_pred HHHHHHHHHHhcc--------------cCcHHHHHHhcCC---CHHHHHHHHHHHHHhccc--------cchhHHHHHHH
Confidence 5555555554443 2345677888888 899999999999887542 22347889999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCc
Q 010064 269 LKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDA 346 (519)
Q Consensus 269 L~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~ 346 (519)
+.. .++.++..|+.+|.++.... .++..|+..|.|++ ++..|+.+|..+.. ...
T Consensus 784 l~D----~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a 839 (897)
T PRK13800 784 TGD----PDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA-----------DVA 839 (897)
T ss_pred hcC----CCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cch
Confidence 987 68999999999999885432 12355777786554 88999999987642 346
Q ss_pred chhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010064 347 FPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILEC 414 (519)
Q Consensus 347 i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~ 414 (519)
++.|+.+|. +.++.++..|+++|..+. .++. ..+.|...+.+.++.++..|.++|..
T Consensus 840 ~~~L~~~L~-D~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 840 VPALVEALT-DPHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 689999998 678999999999999872 2233 57788899999999999999999863
No 35
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.70 E-value=9.2e-07 Score=90.94 Aligned_cols=263 Identities=18% Similarity=0.158 Sum_probs=193.4
Q ss_pred HHHHHHHhcCCCHHH--HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHH
Q 010064 134 LKIVVKDLQSESEEQ--RREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKA 210 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~--~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~ 210 (519)
+..|++++...+.+. +.+|++.|..+.. .++++.++..| +..++.+-+. ..++.+...+.+|.|+..++++...
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~ 258 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQ 258 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHH
Confidence 888999999888764 8999999998773 36888888766 4444444443 6688899999999999999999999
Q ss_pred HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC--CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD--SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL 288 (519)
Q Consensus 211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~--~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL 288 (519)
.++++|+++.++-..+.. ++.+...++-+|.|.+.+. ..+..|++..+..+|.-+-.+ .+.-.+..|+-+.
T Consensus 259 ~Lvaa~~lD~vl~~~rRt---~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s----kDel~R~~AClAV 331 (832)
T KOG3678|consen 259 RLVAAGGLDAVLYWCRRT---DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS----KDELLRLHACLAV 331 (832)
T ss_pred HHHhhcccchheeecccC---CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc----hHHHHHHHHHHHH
Confidence 999999999988888777 7899888888898877654 557888898888999888776 6888899999999
Q ss_pred HHhcCCCccHHHHHhcC---cHHHHHHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHH
Q 010064 289 YNLSIFPSNISFILETD---LIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK 365 (519)
Q Consensus 289 ~nLs~~~~n~~~l~~~g---~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~ 365 (519)
+-|+.+.+--..+-.+| .|.+|+..++...+..-+ ..-+-...+..+..|+-+|. +..-+.|.-
T Consensus 332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~------------hd~aQG~~~d~LqRLvPlLd-S~R~EAq~i 398 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDA------------HDYAQGRGPDDLQRLVPLLD-SNRLEAQCI 398 (832)
T ss_pred hhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhh------------hhhhccCChHHHHHhhhhhh-cchhhhhhh
Confidence 99998887666655555 566676666443332211 11111122456778888888 444455544
Q ss_pred HHHHHHHHh-cCChhhHHHHH-HcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 010064 366 ASYVLMVMA-HKSYGDRQAMI-EAGIASALLELTLLGSTLAQKRASRILECLRVDK 419 (519)
Q Consensus 366 A~~~L~nL~-~~~~~~~~~i~-~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~ 419 (519)
+++-++.=+ ..+...+..++ +-|+|+.|.++..+.+....+-|..+|..+-++-
T Consensus 399 ~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 399 GAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEV 454 (832)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcccc
Confidence 444444322 23334444444 6799999999999888888888999999988653
No 36
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.8e-06 Score=87.02 Aligned_cols=185 Identities=21% Similarity=0.231 Sum_probs=150.5
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHH
Q 010064 143 SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKML 222 (519)
Q Consensus 143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv 222 (519)
+.+.+.+..|...|..++ ++-++...+...|+..+|+.+|++.+..+++.|+++|+.++.+|+...+.+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 447788999999999999 5568899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHH
Q 010064 223 KLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISF 300 (519)
Q Consensus 223 ~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~ 300 (519)
..+.+.. +..++..|..++.+|-.+. .....+...++...|..++.+. ..+...++.++..+.+|..... ....
T Consensus 173 ~~ls~~~--~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~--~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 173 KILSSDD--PNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN--NTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHccCC--CchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC--CcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9998652 4667788888998887664 3455666667799999999883 4688899999999999987655 4444
Q ss_pred HHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC
Q 010064 301 ILETDLIRYLLEMLG--DMELSERILSILSNLVS 332 (519)
Q Consensus 301 l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~ 332 (519)
+...+....+..+.. +.++.+.++.++..+..
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 445566666666663 44577777777666555
No 37
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=4.9e-06 Score=90.47 Aligned_cols=276 Identities=14% Similarity=0.170 Sum_probs=207.6
Q ss_pred hHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCh-
Q 010064 131 LEELKIVVKDLQSES-EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGND- 206 (519)
Q Consensus 131 ~~~l~~Lv~~L~s~~-~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~- 206 (519)
.|.++.|+....+.. .+.|..|+..|..+++ ++|..++. -++++|+..|+. .|++....++.+++++..+.+
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 355888888887665 5789999999999995 58887765 457899999976 689999999999999998653
Q ss_pred -----hhH----------HHHH-hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC--CChhhhh-hCCChHHHHH
Q 010064 207 -----LNK----------AAIV-KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD--SNKPIIG-SSGAVPFLVK 267 (519)
Q Consensus 207 -----~nk----------~~iv-~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~--~~k~~I~-~~gai~~LV~ 267 (519)
..+ ..++ ..+-|..|+..+... +-.++..++..|.+|-..- +.+..+. ..-+|..|+.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~---DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF---DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh---chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 112 2233 458899999999887 8889999999888866543 3355554 4788999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCCH-----H-HHHHHHHHHHHhcCCcccHHHH
Q 010064 268 TLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGDM-----E-LSERILSILSNLVSTPEGRKAI 340 (519)
Q Consensus 268 lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~~-----~-v~~~Al~~L~nLs~~~e~r~~i 340 (519)
+|.. .-..++-.++-.|..|+.++.++++++.. +++..|..++... . +.+.|+..|-||-.+....+.+
T Consensus 174 lL~D----srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~ 249 (970)
T KOG0946|consen 174 LLRD----SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNF 249 (970)
T ss_pred HHhh----hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhH
Confidence 9988 57788999999999999999999998875 8999999999432 2 8899999999999854444445
Q ss_pred hhcCCcchhhhhhccCC--CC-------H-HH--HHHHHHHHHHHhcCC--h----hhHHHHHHcCcHHHHHHHhhcC--
Q 010064 341 SRVPDAFPILVDVLNWT--DS-------P-GC--QEKASYVLMVMAHKS--Y----GDRQAMIEAGIASALLELTLLG-- 400 (519)
Q Consensus 341 ~~~~g~i~~Lv~lL~~s--~~-------~-~~--qe~A~~~L~nL~~~~--~----~~~~~i~~~G~i~~Ll~Ll~~g-- 400 (519)
....+.|+.|..+|.+. ++ + .+ .-.+..++..|..-. . .+.+.+.+.+++..|..++.+.
T Consensus 250 FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~v 329 (970)
T KOG0946|consen 250 FREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGV 329 (970)
T ss_pred HhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCC
Confidence 44489999999888643 11 1 11 233455555555321 1 2345677899999999998876
Q ss_pred CHHHHHHHHHHHHHhhh
Q 010064 401 STLAQKRASRILECLRV 417 (519)
Q Consensus 401 s~~~~~~A~~~L~~l~~ 417 (519)
..+++..+...++....
T Consensus 330 p~dIltesiitvAevVR 346 (970)
T KOG0946|consen 330 PADILTESIITVAEVVR 346 (970)
T ss_pred cHhHHHHHHHHHHHHHH
Confidence 34677777777777764
No 38
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.66 E-value=2.6e-06 Score=91.12 Aligned_cols=142 Identities=19% Similarity=0.160 Sum_probs=108.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcc-HHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhh
Q 010064 275 KVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPIL 350 (519)
Q Consensus 275 ~~~~~~~~~A~~aL~nLs~~~~n-~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~L 350 (519)
..+......|+-++.+++..-.. +.-+-...+..+|++++.+|+ +...++++|.||+. +...|..+.. .|+|..|
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHH
Confidence 35555666666666666544321 111334578899999998776 78899999999998 7788888998 7999999
Q ss_pred hhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC-cHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 351 VDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAG-IASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 351 v~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G-~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
.+++. +.++.++..+.|+|.++..+..+..+...-.. .-..+..+..++++.+|+++..+|+||..+
T Consensus 467 ~s~~~-~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 467 ESMLT-DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHhc-CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 99999 67888999999999999988665544333222 345577888899999999999999999865
No 39
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.7e-06 Score=85.85 Aligned_cols=181 Identities=19% Similarity=0.192 Sum_probs=142.7
Q ss_pred hHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh
Q 010064 104 SKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML 183 (519)
Q Consensus 104 ~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL 183 (519)
.+..++--|.-+.++=.|...+...|+ +.+++..|.+.+..+|..|+++|...+..++.....+.+.|+.+.|+.+|
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~gg---l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGG---LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccC---HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 344444444445566566667767777 88999999999999999999999999999999999999999999999999
Q ss_pred cC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hhhhhhCCC
Q 010064 184 DF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KPIIGSSGA 261 (519)
Q Consensus 184 ~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~~I~~~ga 261 (519)
.+ ++..++..|+.|+.+|..+++.....+...++...|..+++++.. +..++..++..|..|...... +..+...+.
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~-~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNT-SVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 87 556788999999999999999999999999999999999999632 667777777777776654433 444444666
Q ss_pred hHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 262 VPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 262 i~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
...++.+... .+..+...++.++..+.
T Consensus 255 ~~~~~~l~~~----l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 255 QRVLENLISS----LDFEVNEAALTALLSLL 281 (342)
T ss_pred hHHHHHHhhc----cchhhhHHHHHHHHHHH
Confidence 6677777666 56777777777765544
No 40
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.57 E-value=3e-06 Score=86.62 Aligned_cols=277 Identities=14% Similarity=0.050 Sum_probs=200.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcC-CHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLG-AIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAA 211 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G-~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~ 211 (519)
....+.+|...+.-....+.+.|..++.-.. .+....+.. ....|-..+++ .+.+....++++|--+... ++.|-.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~-~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGN-CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence 4556677777777666667777777664321 111110100 12233334444 6667777788899999885 899999
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
++.+.++..|+..+.+..- +-.++-..+-++|-|+.++...+.+...+.|+.|.++++.. ...++.+-.+.++.|+
T Consensus 194 ~v~adg~~~l~~~l~s~~~-~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~---~KEKV~Rivlai~~Nl 269 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKC-GFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKES---TKEKVTRIVLAIFRNL 269 (442)
T ss_pred eeecCcchhhHHHHhccCc-chhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 9999999999998843211 56778888899999999998888887789999999999985 7788999999999999
Q ss_pred cCCCc-------cHHHHHhcCcHHHHHHHc----CCHH-------HHHHHHHHHHHhcCCcccHHHHhh-----------
Q 010064 292 SIFPS-------NISFILETDLIRYLLEML----GDME-------LSERILSILSNLVSTPEGRKAISR----------- 342 (519)
Q Consensus 292 s~~~~-------n~~~l~~~g~v~~Lv~lL----~~~~-------v~~~Al~~L~nLs~~~e~r~~i~~----------- 342 (519)
....+ ....++..++.+.+-.+. .|++ +.+.--.-.-.|++.++...++..
T Consensus 270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~ 349 (442)
T KOG2759|consen 270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKS 349 (442)
T ss_pred hccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccc
Confidence 87662 344566666666554444 3444 333333444456665555555432
Q ss_pred --------------cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064 343 --------------VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRA 408 (519)
Q Consensus 343 --------------~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A 408 (519)
.-..+..|+.+|+.+.+|.+-.-||.=+....+..|+.+..+.+.|+=..+++|+.+.+|+++-.|
T Consensus 350 e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~A 429 (442)
T KOG2759|consen 350 EKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHA 429 (442)
T ss_pred cchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHH
Confidence 113467889999866678888888988999999888889999999999999999999999999999
Q ss_pred HHHHHHhh
Q 010064 409 SRILECLR 416 (519)
Q Consensus 409 ~~~L~~l~ 416 (519)
..+++.|-
T Consensus 430 LlavQ~lm 437 (442)
T KOG2759|consen 430 LLAVQKLM 437 (442)
T ss_pred HHHHHHHH
Confidence 99998764
No 41
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.57 E-value=1.7e-06 Score=92.55 Aligned_cols=224 Identities=13% Similarity=0.111 Sum_probs=160.7
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHH
Q 010064 143 SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKML 222 (519)
Q Consensus 143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv 222 (519)
..+.+....|+.++.++++.-...|..+....++.+||++|..++..++..++.+|+||......-|..++..|+|+.|.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 34666777788888888877667777787889999999999889999999999999999999888999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhh--hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHH
Q 010064 223 KLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIG--SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NIS 299 (519)
Q Consensus 223 ~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~--~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~ 299 (519)
.++.+. +..++..+.|+|.++..+.+...+.. ..=.-..++.+... .+..+++.+...|+||.++.. ...
T Consensus 468 s~~~~~---~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd----~d~~Vqeq~fqllRNl~c~~~~svd 540 (678)
T KOG1293|consen 468 SMLTDP---DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND----PDWAVQEQCFQLLRNLTCNSRKSVD 540 (678)
T ss_pred HHhcCC---CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC----CCHHHHHHHHHHHHHhhcCcHHHHH
Confidence 999999 89999999999999999877654432 23334566677766 799999999999999998865 566
Q ss_pred HHHhc-C-cHHHHH---HHcCCHHHHHHHHHHHHHhcC--CcccHHHHhhcCCcchhhhhhcc-------CCCCHHHHHH
Q 010064 300 FILET-D-LIRYLL---EMLGDMELSERILSILSNLVS--TPEGRKAISRVPDAFPILVDVLN-------WTDSPGCQEK 365 (519)
Q Consensus 300 ~l~~~-g-~v~~Lv---~lL~~~~v~~~Al~~L~nLs~--~~e~r~~i~~~~g~i~~Lv~lL~-------~s~~~~~qe~ 365 (519)
++++. + .+.... .+-.-.++...-..-+.++.. +...+.++.+ .++.++-.-. .+.......+
T Consensus 541 fll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~---~fk~lvl~~e~~~n~~q~s~~~qls~~ 617 (678)
T KOG1293|consen 541 FLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEG---IFKILVLLAEVNENKKQLSIEQQLSLN 617 (678)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHHH---HHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 66554 1 122111 222222233333444444444 3344455443 3333332211 1223456678
Q ss_pred HHHHHHHHhcC
Q 010064 366 ASYVLMVMAHK 376 (519)
Q Consensus 366 A~~~L~nL~~~ 376 (519)
+.|.+.|+...
T Consensus 618 ~~~~iinl~~~ 628 (678)
T KOG1293|consen 618 IMSEIINLTTT 628 (678)
T ss_pred HHHHHHhccCC
Confidence 89999999875
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.52 E-value=1.3e-05 Score=87.55 Aligned_cols=274 Identities=20% Similarity=0.226 Sum_probs=185.6
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG 181 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~ 181 (519)
+..+..++..+.++...+-. +.+ ++.+.+.|.++++.+|..|+.++.++.+.+++.-. .. .++.+..
T Consensus 93 ~~~~~lAL~~l~~i~~~~~~-~~l--------~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~ 159 (526)
T PF01602_consen 93 PYIRGLALRTLSNIRTPEMA-EPL--------IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQ 159 (526)
T ss_dssp HHHHHHHHHHHHHH-SHHHH-HHH--------HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHH
T ss_pred HHHHHHHHhhhhhhcccchh-hHH--------HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhh
Confidence 55677888888887733322 222 67788888999999999999999999877654322 22 5899999
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCC
Q 010064 182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGA 261 (519)
Q Consensus 182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~ga 261 (519)
+|.+.++.++..|+.++..+ ..+++.-..+ -...++.|.+++... ++-.+..++..|..+........ .....
T Consensus 160 lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~---~~~~q~~il~~l~~~~~~~~~~~--~~~~~ 232 (526)
T PF01602_consen 160 LLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDP---DPWLQIKILRLLRRYAPMEPEDA--DKNRI 232 (526)
T ss_dssp HTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCC---SHHHHHHHHHHHTTSTSSSHHHH--HHHHH
T ss_pred hccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhccccc---chHHHHHHHHHHHhcccCChhhh--hHHHH
Confidence 99989999999999999999 2223221111 122455555566666 78888888888877765432211 00456
Q ss_pred hHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHH
Q 010064 262 VPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKA 339 (519)
Q Consensus 262 i~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~ 339 (519)
++.+..++.+ .+..+...|+.++.++..... .-..++++|+.+|. +++++..++..|..|+... ...
T Consensus 233 i~~l~~~l~s----~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~ 301 (526)
T PF01602_consen 233 IEPLLNLLQS----SSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPA 301 (526)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHH
T ss_pred HHHHHHHhhc----cccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chh
Confidence 8888888887 688899999999998876654 44567788888885 4458888999999998743 222
Q ss_pred HhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHh-hcCCHHHHHHHHHHHHHhhh
Q 010064 340 ISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELT-LLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 340 i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll-~~gs~~~~~~A~~~L~~l~~ 417 (519)
+.. .. ..+..+..++++.++..++.+|..|+. +.+.+. +++.|...+ ..+++..+..+...+..+..
T Consensus 302 v~~---~~-~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 302 VFN---QS-LILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp HGT---HH-HHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred hhh---hh-hhhheecCCCChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 221 11 222334335678899999999999985 344333 466777777 34477788888888887774
No 43
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.7e-06 Score=91.99 Aligned_cols=212 Identities=18% Similarity=0.162 Sum_probs=165.3
Q ss_pred hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhh
Q 010064 131 LEELKIVVKDLQSE-SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLN 208 (519)
Q Consensus 131 ~~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~n 208 (519)
...++.|+.+|+.+ |.++...|+++|.+|+..-+..-..+++.++||.|++-|.. ...++-+.++.||-.|+.. +
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H 286 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---H 286 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---c
Confidence 34589999999765 78999999999999998888888889999999999976655 8899999999999999864 5
Q ss_pred HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064 209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR 286 (519)
Q Consensus 209 k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~ 286 (519)
-..++++|++...+.++.-- +..++..|+++..|.... ++.-..+ ..++|.|..+|+. .+.+....++-
T Consensus 287 ~~AiL~AG~l~a~LsylDFF---Si~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~----~D~k~ies~~i 357 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFF---SIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSY----QDKKPIESVCI 357 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhh----ccchhHHHHHH
Confidence 56899999999999988766 678888888888886543 2222222 3479999999998 68899999999
Q ss_pred HHHHhcCC----CccHHHHHhcCcHHHHHHHcCC------HHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhcc
Q 010064 287 ALYNLSIF----PSNISFILETDLIRYLLEMLGD------MELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLN 355 (519)
Q Consensus 287 aL~nLs~~----~~n~~~l~~~g~v~~Lv~lL~~------~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~ 355 (519)
++.+++.. ++-.+.+...|.|....++|.- ..+.......|.-|++ .+-....+.. .+....|-.+|.
T Consensus 358 c~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k-~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 358 CLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLK-LDIADTLKRILQ 436 (1051)
T ss_pred HHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHH-hhHHHHHHHHHh
Confidence 99999764 2345667778999888888832 2366677888888888 4666666665 455566666654
No 44
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=6.2e-05 Score=85.44 Aligned_cols=311 Identities=16% Similarity=0.114 Sum_probs=190.7
Q ss_pred hhhHHHHHHHHHcccCC--hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC---hhhHHHHHhcCCH
Q 010064 102 CVSKSEKLLDLLNLAEG--EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKEN---SETRVTLAMLGAI 176 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~--e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~---~~~r~~l~~~G~i 176 (519)
+..|+-++..|.++... ......+ .+..+.+.+-+...+..+|..|++++...+... ...+..+.. .+
T Consensus 132 ~~~rE~al~il~s~~~~~~~~~~~~~-----~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~--ll 204 (1075)
T KOG2171|consen 132 PSLRESALLILSSLPETFGNTLQPHL-----DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD--LL 204 (1075)
T ss_pred cchhHHHHHHHHhhhhhhccccchhH-----HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH--Hh
Confidence 44566666666666533 2332222 122455566666666669999998888866443 334444433 55
Q ss_pred HHHHHhh----cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC
Q 010064 177 PPLAGML----DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN 252 (519)
Q Consensus 177 ~~Lv~lL----~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~ 252 (519)
|.++..+ +.++.+.-..++.+|..|+...++.-...++. +|...+++.++..- +..++..|+..|..++...+.
T Consensus 205 P~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l-~~~~R~~ALe~ivs~~e~Ap~ 282 (1075)
T KOG2171|consen 205 PSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKEL-ENSIRHLALEFLVSLSEYAPA 282 (1075)
T ss_pred HHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccc-cHHHHHHHHHHHHHHHHhhHH
Confidence 6555544 45777777788888888887655554444333 55666666655422 556677776666665533211
Q ss_pred hhhhhh------------------------------------------------------CCChHHHHHHhhcCCCCCCH
Q 010064 253 KPIIGS------------------------------------------------------SGAVPFLVKTLKNSDKKVSP 278 (519)
Q Consensus 253 k~~I~~------------------------------------------------------~gai~~LV~lL~~~~~~~~~ 278 (519)
...... +-.+|+++..+..-..+.+.
T Consensus 283 ~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w 362 (1075)
T KOG2171|consen 283 MCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEW 362 (1075)
T ss_pred HhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCH
Confidence 111100 11222222222111233677
Q ss_pred HHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcC--CcccHHHHhhcCCcchhhhhh
Q 010064 279 QAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDM--ELSERILSILSNLVS--TPEGRKAISRVPDAFPILVDV 353 (519)
Q Consensus 279 ~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~--~~e~r~~i~~~~g~i~~Lv~l 353 (519)
.-+..|+.+|.-++.+.. .... .=..+++..+..|.|+ .++..||.+++-++. .++..+.-.+ ..++.|+..
T Consensus 363 ~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e--~l~~aL~~~ 439 (1075)
T KOG2171|consen 363 KERHAALLALSVIAEGCSDVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE--RLPPALIAL 439 (1075)
T ss_pred HHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH--hccHHHHHH
Confidence 778888888888776653 1111 1124566666777665 499999999999998 4555554444 488899999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHH-HHHHHhhcCCHHHHHHHHHHHHHhhhcCCCccc
Q 010064 354 LNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIAS-ALLELTLLGSTLAQKRASRILECLRVDKGKQVS 424 (519)
Q Consensus 354 L~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~-~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~~~ 424 (519)
+.+..++.++.+|+.++.|+.....+..-.=.=.+++. .|..|..++++.+|..+..+|+-.++..+..-.
T Consensus 440 ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~ 511 (1075)
T KOG2171|consen 440 LDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI 511 (1075)
T ss_pred hcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH
Confidence 99889999999999999998864332111111134555 566677789999999999999999987655544
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.43 E-value=5.1e-05 Score=79.96 Aligned_cols=234 Identities=15% Similarity=0.114 Sum_probs=167.8
Q ss_pred hcchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhc-----CCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 010064 127 KEEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAML-----GAIPPLAGMLDFQLADSQISSLYALLN 200 (519)
Q Consensus 127 ~~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~-----G~i~~Lv~lL~s~~~~~~~~a~~aL~N 200 (519)
+......+..++.+|+. .+.+...+.+..+..|..+++..-..|.+. ....+++.+|..++.-++..++..|..
T Consensus 48 ~~~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 48 DVLSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAK 127 (429)
T ss_pred cccHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence 33335667888888864 456777888888888887876555555553 567888899998888999999999999
Q ss_pred hcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHH
Q 010064 201 LGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQA 280 (519)
Q Consensus 201 La~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~ 280 (519)
|......+.......-.++.|...++++. +...+..++..|..|...++.|..+.+.++++.|+.+|+.. ..+.+.
T Consensus 128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~--~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~--~~~~Ql 203 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFNWLKEQLNNIT--NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNA--TLGFQL 203 (429)
T ss_pred HHhcCccccchhHHHHHHHHHHHHhhccC--CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhc--cccHHH
Confidence 98643322111111113445566666541 36677778888999999999999998888999999999873 237799
Q ss_pred HHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH---HHHHHHHHHHHHhcCCc-------ccHHHHhhcCCcchhh
Q 010064 281 KQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM---ELSERILSILSNLVSTP-------EGRKAISRVPDAFPIL 350 (519)
Q Consensus 281 ~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~---~v~~~Al~~L~nLs~~~-------e~r~~i~~~~g~i~~L 350 (519)
+-.++-+++-|+-+++....+...+.|+.|+.++... ++..-++.+|.||...+ .....+++ . .++.+
T Consensus 204 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~-~l~~~ 281 (429)
T cd00256 204 QYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ-C-KVLKT 281 (429)
T ss_pred HHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH-c-ChHHH
Confidence 9999999999999888777777789999999999643 38889999999999832 13345566 3 44556
Q ss_pred hhhccCC--CCHHHHHHH
Q 010064 351 VDVLNWT--DSPGCQEKA 366 (519)
Q Consensus 351 v~lL~~s--~~~~~qe~A 366 (519)
++.|... .++++.+.-
T Consensus 282 l~~L~~rk~~DedL~edl 299 (429)
T cd00256 282 LQSLEQRKYDDEDLTDDL 299 (429)
T ss_pred HHHHhcCCCCcHHHHHHH
Confidence 6666421 355555443
No 46
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.42 E-value=3e-05 Score=84.63 Aligned_cols=252 Identities=19% Similarity=0.211 Sum_probs=179.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
+..+.+.|.++|+..+..|+++|.++. +++.... +++.+..+|.++++-+|..|+.++..+...+++ .+.
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~ 150 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVE 150 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHH
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHH
Confidence 677788899999999999999999988 3344443 368899999999999999999999999875333 333
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~ 293 (519)
.. .++.+.+++.++ ++.+...|+.++..+ ..+..... ..++.++..|.......++-.+..++..|..++.
T Consensus 151 ~~-~~~~l~~lL~d~---~~~V~~~a~~~l~~i---~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDK---DPSVVSAALSLLSEI---KCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp GG-HHHHHHHHTTHS---SHHHHHHHHHHHHHH---HCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HH-HHHHHhhhccCC---cchhHHHHHHHHHHH---ccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 33 689999999888 899999999999888 11111111 3444444443310012789999999999999887
Q ss_pred CCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064 294 FPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM 371 (519)
Q Consensus 294 ~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~ 371 (519)
.......- ...++.+..++.+. .+...++.++.++...+. +.. .+++.|..+|. +.++.++-.++..|.
T Consensus 222 ~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~~~--~~~~~L~~lL~-s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 222 MEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----LLQ--KAINPLIKLLS-SSDPNVRYIALDSLS 292 (526)
T ss_dssp SSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----HHH--HHHHHHHHHHT-SSSHHHHHHHHHHHH
T ss_pred CChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----HHH--hhHHHHHHHhh-cccchhehhHHHHHH
Confidence 65432211 45677777777543 488899999998887655 333 47789999999 678889999999999
Q ss_pred HHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 372 VMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 372 nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
.|+... ...+. .....+..+..+.++.++..+..+|..+.+.
T Consensus 293 ~l~~~~---~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 293 QLAQSN---PPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HHCCHC---HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred Hhhccc---chhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 999764 22222 2222333333478899999999999998854
No 47
>PTZ00429 beta-adaptin; Provisional
Probab=98.41 E-value=0.00015 Score=81.74 Aligned_cols=255 Identities=16% Similarity=0.148 Sum_probs=178.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
.+..+++.+.+.+.+.|....-.+.++++.+++... + ++..|.+=+.++++.++-.|+++|.++-.. .+
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-L----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~------~i 137 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-L----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS------SV 137 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-H----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH------HH
Confidence 367778888899999999999999898876655432 2 578888888899999999999999998873 23
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
++. +++.+.+.+.+. ++-++..|+-++..+-...+ ..+...+.++.|..+|.. .++.+..+|+.+|..+.
T Consensus 138 ~e~-l~~~lkk~L~D~---~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D----~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 138 LEY-TLEPLRRAVADP---DPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLND----NNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHH-HHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcC----CCccHHHHHHHHHHHHH
Confidence 332 566777888887 89999999988888865433 344467889999999887 79999999999999997
Q ss_pred CCCccHHHHHhcCcHHHHHHHcCCH-H-HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064 293 IFPSNISFILETDLIRYLLEMLGDM-E-LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL 370 (519)
Q Consensus 293 ~~~~n~~~l~~~g~v~~Lv~lL~~~-~-v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L 370 (519)
...... .-+..+.+..|+..|.+. + .+...+.+|... .+....... ..+..+...|+ +.++.+.-.|+.++
T Consensus 208 ~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~~---~il~~l~~~Lq-~~N~AVVl~Aik~i 280 (746)
T PTZ00429 208 DYGSEK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESAE---TLLTRVLPRMS-HQNPAVVMGAIKVV 280 (746)
T ss_pred HhCchh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHHH---HHHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 654322 223455677788777543 3 455666666442 233223222 36667778888 56899999999999
Q ss_pred HHHhcCC-hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 371 MVMAHKS-YGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 371 ~nL~~~~-~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
+++.... +...+.+. ..+.++|+.| ..+++.+|--+..-|..+..
T Consensus 281 l~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 281 ANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLV 326 (746)
T ss_pred HHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHH
Confidence 9988642 22111111 1233666666 35667788777766666653
No 48
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=3.7e-06 Score=87.92 Aligned_cols=260 Identities=14% Similarity=0.093 Sum_probs=185.0
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCC
Q 010064 150 REAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPV 229 (519)
Q Consensus 150 ~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~ 229 (519)
..++.+|..+++.-.-.|..+.+..++++|++.|+.++..+.-.++..++|+.+....-+..+++.|++..|+.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK- 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK- 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence 3445666678877778899999999999999999988888888889999999998888899999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-c---HHHHHh
Q 010064 230 APNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-N---ISFILE 303 (519)
Q Consensus 230 ~~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n---~~~l~~ 303 (519)
+..++....|.+.++..+..+ +-.....-++..++.+... ....++.+.+..|.|+.+++. | +..++.
T Consensus 486 --DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~ND----pc~~vq~q~lQilrNftc~~~knEkskdv~~K 559 (743)
T COG5369 486 --DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTND----PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIK 559 (743)
T ss_pred --hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcC----cccccHHHHHHHHHhcccccccccccceeEEe
Confidence 789999999999999877544 5566677778999999887 688999999999999998543 2 333333
Q ss_pred cCcHHHHHHHc----C--CHHHHHHHHHHHHHhcCCcccHHHHh-hcCCcchhhhhhc----------------------
Q 010064 304 TDLIRYLLEML----G--DMELSERILSILSNLVSTPEGRKAIS-RVPDAFPILVDVL---------------------- 354 (519)
Q Consensus 304 ~g~v~~Lv~lL----~--~~~v~~~Al~~L~nLs~~~e~r~~i~-~~~g~i~~Lv~lL---------------------- 354 (519)
.--...|...| . .|-..+..+.+|.+++..++..+.++ +....+..+.++|
T Consensus 560 ~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~ 639 (743)
T COG5369 560 ATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPI 639 (743)
T ss_pred cChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcc
Confidence 33333344333 1 22233455788888887555444332 2112222222211
Q ss_pred ---------------------------c---CCCCHHHHHHHHHHHHHHhcCC---h------hhHHHHHHcCcHHHHHH
Q 010064 355 ---------------------------N---WTDSPGCQEKASYVLMVMAHKS---Y------GDRQAMIEAGIASALLE 395 (519)
Q Consensus 355 ---------------------------~---~s~~~~~qe~A~~~L~nL~~~~---~------~~~~~i~~~G~i~~Ll~ 395 (519)
+ ...+.+.-.+..|++.|+.... + +.++.+.+.|.-.-|..
T Consensus 640 s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k 719 (743)
T COG5369 640 SYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVK 719 (743)
T ss_pred ceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHH
Confidence 0 0123345556678888875531 1 23444556777777777
Q ss_pred HhhcCCHHHHHHHHHHHHHhh
Q 010064 396 LTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 396 Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
+-.+.++.+++++..+|.+++
T Consensus 720 ~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 720 IQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HhccCcHHHHHHHHHHHHhhh
Confidence 777889999999999999886
No 49
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=4.4e-05 Score=83.30 Aligned_cols=283 Identities=15% Similarity=0.130 Sum_probs=206.2
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCh------h----------hHHHHH-hcCCHHHHHHhhcCCCHHHHH
Q 010064 132 EELKIVVKDLQSE--SEEQRREAASKVRSLAKENS------E----------TRVTLA-MLGAIPPLAGMLDFQLADSQI 192 (519)
Q Consensus 132 ~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~------~----------~r~~l~-~~G~i~~Lv~lL~s~~~~~~~ 192 (519)
.+++++++.|+.+ |++.-..++..+.++...+. . ..+.++ ..+.|..|+.+++..|-.++.
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 3489999999755 67778889999999776652 1 223333 378899999999999999999
Q ss_pred HHHHHHHHhcCCC-hhhHHHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh-CCChHHHHHHh
Q 010064 193 SSLYALLNLGIGN-DLNKAAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS-SGAVPFLVKTL 269 (519)
Q Consensus 193 ~a~~aL~NLa~~~-~~nk~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~-~gai~~LV~lL 269 (519)
.+...|.+|-..- .+.+..++. .-+|..|+.+|.+. ...++-.++..|..|+.+...-..++. ..+...|..++
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds---rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsII 217 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS---REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSII 217 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh---hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHH
Confidence 9999999987642 334555554 57899999999998 678888999899999988777666665 78899999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC-----CHH--------H--HHHHHHHHHHhcC-
Q 010064 270 KNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG-----DME--------L--SERILSILSNLVS- 332 (519)
Q Consensus 270 ~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~-----~~~--------v--~~~Al~~L~nLs~- 332 (519)
...-.....-+..+|+..|-||..++. |...+.+.+.||.|..+|. |.+ + .-.++.++.-|+.
T Consensus 218 eeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP 297 (970)
T KOG0946|consen 218 EEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP 297 (970)
T ss_pred HhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC
Confidence 874111223478899999999998765 9999999999999998883 321 1 2357777777776
Q ss_pred -C-----cccHHHHhhcCCcchhhhhhccCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHHcC---------cHHH-HHH
Q 010064 333 -T-----PEGRKAISRVPDAFPILVDVLNWTD-SPGCQEKASYVLMVMAHKSYGDRQAMIEAG---------IASA-LLE 395 (519)
Q Consensus 333 -~-----~e~r~~i~~~~g~i~~Lv~lL~~s~-~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G---------~i~~-Ll~ 395 (519)
+ ..+.+++.. .+++..|..++-+++ ..+++..+.-++.++..++..+...+.... .|-. |+.
T Consensus 298 ~Nt~~~~~q~qk~l~s-s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllms 376 (970)
T KOG0946|consen 298 GNTSSITHQNQKALVS-SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMS 376 (970)
T ss_pred CCcHHHHHHHHHHHHH-cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHH
Confidence 1 124456666 789999999888554 347888899999999999888877776521 1222 233
Q ss_pred Hhhc-CCHHHHHHHHHHHHHhhhc
Q 010064 396 LTLL-GSTLAQKRASRILECLRVD 418 (519)
Q Consensus 396 Ll~~-gs~~~~~~A~~~L~~l~~~ 418 (519)
++.. ..+..|-.+...+..+-.+
T Consensus 377 m~ne~q~~~lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 377 MFNEKQPFSLRCAVLYCFRSYLYD 400 (970)
T ss_pred HHhccCCchHHHHHHHHHHHHHhc
Confidence 3333 3455666666666666643
No 50
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.35 E-value=5.9e-06 Score=72.12 Aligned_cols=124 Identities=17% Similarity=0.125 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh
Q 010064 130 ALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN 208 (519)
Q Consensus 130 ~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n 208 (519)
-.+.++.||...+. .+.+.|.....-|.|.+ -|+-+...+.+..++..+|..|..++..+.+-+...|+|+|.+ ..|
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n 91 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTN 91 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHH
Confidence 34668899998864 46788888889999999 4678999999999999999999999999999999999999995 999
Q ss_pred HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-Chhhhhh
Q 010064 209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NKPIIGS 258 (519)
Q Consensus 209 k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~k~~I~~ 258 (519)
++.|++++++|..+..+.++ ...+...++.+|..|+.... .++.+..
T Consensus 92 ~~~I~ea~g~plii~~lssp---~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSP---PEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHHHHhcCCceEEeecCCC---hHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 99999999999999999998 77888888888888886543 3555544
No 51
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00016 Score=71.50 Aligned_cols=233 Identities=18% Similarity=0.232 Sum_probs=159.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
+..++.+|++.++.++..|+.-+-.|+.. ..+..... .-.++.|.+++....+ .+.|+.+|.|++.. +..++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHH
Confidence 56789999999999999999888888855 33333322 3357778888876555 67789999999994 7777788
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh-------CCChHHHHHHhhcC-------------
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS-------SGAVPFLVKTLKNS------------- 272 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~-------~gai~~LV~lL~~~------------- 272 (519)
+.. .+..++.++.++ .......++..|.||+..++....+.. .|.+...+..+...
T Consensus 80 l~~-~~k~l~~~~~~p---~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDP---QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHH-HHHHHHHHhcCc---ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 777 888888888887 456677778888899877654333221 23333333333222
Q ss_pred ---------------------------CCCCCHHH-HHHHHHHHHHhcCCCccHHHHHhc--CcHHHHHHH---------
Q 010064 273 ---------------------------DKKVSPQA-KQDALRALYNLSIFPSNISFILET--DLIRYLLEM--------- 313 (519)
Q Consensus 273 ---------------------------~~~~~~~~-~~~A~~aL~nLs~~~~n~~~l~~~--g~v~~Lv~l--------- 313 (519)
..+.+..+ +.-.+.+|.|.|-...+...++.. ..++.++.=
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence 01122222 233567788877766655555542 344444322
Q ss_pred ------------c-------CCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064 314 ------------L-------GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA 374 (519)
Q Consensus 314 ------------L-------~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~ 374 (519)
| .|++++..-+.+|.-|+.+..+|..+.+ .|+.+.+-++=+|..++++.+.+-.++..|.
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~-kgvYpilRElhk~e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRS-KGVYPILRELHKWEEDEDIREACEQVVQMLV 314 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHh-cCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 2 1244888999999999999999999999 6899988888888888888877766666655
Q ss_pred cC
Q 010064 375 HK 376 (519)
Q Consensus 375 ~~ 376 (519)
..
T Consensus 315 ~~ 316 (353)
T KOG2973|consen 315 RL 316 (353)
T ss_pred hc
Confidence 54
No 52
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.19 E-value=2.9e-05 Score=67.86 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=128.0
Q ss_pred CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCccc
Q 010064 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEG 336 (519)
Q Consensus 259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~ 336 (519)
-+.+..||.-.... .+.+.++..+.-|+|.+-++-|-..+.+..++..++..|..++ +.+-+.+.|+|||.++.+
T Consensus 15 l~Ylq~LV~efq~t---t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTT---TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred HHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 45677888877774 7899999999999999999999999999999999999997554 899999999999999999
Q ss_pred HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064 337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415 (519)
Q Consensus 337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l 415 (519)
.+.|.. .++++.++..+. +......-.|+..+.-|+-+....+..+....++..+.+.....+.+.+.-|...|...
T Consensus 92 ~~~I~e-a~g~plii~~ls-sp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 92 AKFIRE-ALGLPLIIFVLS-SPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred HHHHHH-hcCCceEEeecC-CChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999998 799999999998 55666777888999999988777888998888888888887666666666666666543
No 53
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0001 Score=79.20 Aligned_cols=271 Identities=14% Similarity=0.131 Sum_probs=184.7
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH-h---cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLA-M---LGAIPPLAGMLDFQLADSQISSLYALLNLGIG 204 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~-~---~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~ 204 (519)
++.+.++.|..+|.+.+...+.-|..+|.+++.++.+.-+.-. . .-.+|.++++.+++++.++..|..++-....
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~- 203 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII- 203 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee-
Confidence 6678899999999998888889999999999976543322211 1 2358899999999999999999998877665
Q ss_pred ChhhHHHHHhc-CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHH
Q 010064 205 NDLNKAAIVKA-GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQD 283 (519)
Q Consensus 205 ~~~nk~~iv~a-G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~ 283 (519)
......++.- -.+..|..+-.++ +++++...+.+|..|......|-.=--.+.|..+++.-+. .+..+...
T Consensus 204 -~~~qal~~~iD~Fle~lFalanD~---~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd----~dE~VALE 275 (885)
T KOG2023|consen 204 -IQTQALYVHIDKFLEILFALANDE---DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQD----VDENVALE 275 (885)
T ss_pred -cCcHHHHHHHHHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccC----cchhHHHH
Confidence 2334444432 3566666666666 8999999999998876442222111124566777776666 57779999
Q ss_pred HHHHHHHhcCCCccHHHHHh--cCcHHHHHHHc----------C-C-H--------------------------------
Q 010064 284 ALRALYNLSIFPSNISFILE--TDLIRYLLEML----------G-D-M-------------------------------- 317 (519)
Q Consensus 284 A~~aL~nLs~~~~n~~~l~~--~g~v~~Lv~lL----------~-~-~-------------------------------- 317 (519)
|+.....++..+.....+.. ...||.|++-+ + . +
T Consensus 276 ACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDd 355 (885)
T KOG2023|consen 276 ACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDD 355 (885)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccc
Confidence 99999999988743333332 25666665332 2 0 0
Q ss_pred --------------HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010064 318 --------------ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQA 383 (519)
Q Consensus 318 --------------~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~ 383 (519)
+++....++|--|+.. -++.+... .+|.|-+.|. ++...++|.++.+|+.++.+ +-+-
T Consensus 356 ddDe~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~--l~PlLk~~L~-~~~W~vrEagvLAlGAIAEG---cM~g 427 (885)
T KOG2023|consen 356 DDDEDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPI--LLPLLKEHLS-SEEWKVREAGVLALGAIAEG---CMQG 427 (885)
T ss_pred cccccccccccccccHhhccHHHHHHHHHh--hHHHHHHH--HHHHHHHHcC-cchhhhhhhhHHHHHHHHHH---Hhhh
Confidence 0222233333333321 23444443 6677777777 57788999999999999954 3333
Q ss_pred HHH--cCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 384 MIE--AGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 384 i~~--~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
+.. ...||-|++++.+..|.+|.-.+|.|....
T Consensus 428 ~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys 462 (885)
T KOG2023|consen 428 FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYS 462 (885)
T ss_pred cccchHHHHHHHHHHhccCccceeeeeeeeHhhhh
Confidence 332 247899999999999999999999998765
No 54
>PF05536 Neurochondrin: Neurochondrin
Probab=98.02 E-value=0.00037 Score=76.39 Aligned_cols=241 Identities=15% Similarity=0.124 Sum_probs=160.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh---HHHHHhcCcHHHHHHhhcCCCCC----CHHHHHHHHHHHHHhc
Q 010064 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN---KAAIVKAGAVHKMLKLIESPVAP----NPSVSEAIVANFLGLS 247 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n---k~~iv~aG~v~~Lv~lL~s~~~~----~~~~~~~a~~aL~~LS 247 (519)
.+...+.+|+..+++-+.+++..+.++...++.+ ++.+.++=+.+-|-++|+++..+ .......++.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3567789999988888999999999999876643 45688875578888888874321 3455677788888888
Q ss_pred cCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH-HHHHHHHH
Q 010064 248 ALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME-LSERILSI 326 (519)
Q Consensus 248 ~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~-v~~~Al~~ 326 (519)
..++....----+-||.|+.++... .+..+..+|+.+|+.++.+++....+++.|+|+.|+.++.+.. ..+.|+.+
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~---s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSS---SDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHH
Confidence 7665432211245699999999884 4459999999999999999999999999999999999986543 78899999
Q ss_pred HHHhcCCcccHHHHhhcC----CcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhh-HH----HHHHcCcHHHHHHHh
Q 010064 327 LSNLVSTPEGRKAISRVP----DAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGD-RQ----AMIEAGIASALLELT 397 (519)
Q Consensus 327 L~nLs~~~e~r~~i~~~~----g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~-~~----~i~~~G~i~~Ll~Ll 397 (519)
|.+|+..... +.+.+.. ..+..|-.... ......+-..+..|..+-...+.. .+ .-.-..+...+..++
T Consensus 163 L~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs-~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 163 LLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFS-SFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHH-hhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 9999873221 1111111 13334444443 222333444566666665543211 11 112233444555566
Q ss_pred hcC-CHHHHHHHHHHHHHhhhcCC
Q 010064 398 LLG-STLAQKRASRILECLRVDKG 420 (519)
Q Consensus 398 ~~g-s~~~~~~A~~~L~~l~~~~~ 420 (519)
.+. ++..|..|..+.+.|-+-.+
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhC
Confidence 543 66777777777777775533
No 55
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.01 E-value=0.0028 Score=66.24 Aligned_cols=269 Identities=19% Similarity=0.176 Sum_probs=179.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAA 211 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~ 211 (519)
++.+..++-+++.+++..+.+.+|.+..+ ...-..+.+.+.=-.++.-|.. .+..-+++|++.++.+..- .... .
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~-~~~~-~ 103 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI-KKGP-K 103 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh-cCCc-c
Confidence 44444455556688899999999998855 4666667777755555566644 3455678999988887753 1121 2
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
-+..|++..++.+...+ +...+..+..+|+.++.. +...+...|++..|++.+.+ +..+.....+.++.++
T Consensus 104 ~~~~~vvralvaiae~~---~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d----~~~~~~~~l~~~lL~l 174 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHE---DDRLRRICLETLCELALL--NPELVAECGGIRVLLRALID----GSFSISESLLDTLLYL 174 (371)
T ss_pred cCCHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHh----ccHhHHHHHHHHHHHH
Confidence 23668999999999998 788999999999999876 44666789999999999987 5666888999999999
Q ss_pred cCCCccHHHHHhcCcHHHHHHHcCCH-----------HHHHHHHHHHHHhcCCcccHHHHhhcC-CcchhhhhhccCCCC
Q 010064 292 SIFPSNISFILETDLIRYLLEMLGDM-----------ELSERILSILSNLVSTPEGRKAISRVP-DAFPILVDVLNWTDS 359 (519)
Q Consensus 292 s~~~~n~~~l~~~g~v~~Lv~lL~~~-----------~v~~~Al~~L~nLs~~~e~r~~i~~~~-g~i~~Lv~lL~~s~~ 359 (519)
...+..+..+...--+..++.-+.|. +....+..++..+-.+..+--.+.... .++..|++.|. ..+
T Consensus 175 Ld~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~-~p~ 253 (371)
T PF14664_consen 175 LDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLR-LPN 253 (371)
T ss_pred hCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHc-CCC
Confidence 99998887766544455555444322 222233334443333333333332211 45666666666 345
Q ss_pred HHHHHHHHHHHHHHhcCC-------------------h-----------------------------hh----HHHHHHc
Q 010064 360 PGCQEKASYVLMVMAHKS-------------------Y-----------------------------GD----RQAMIEA 387 (519)
Q Consensus 360 ~~~qe~A~~~L~nL~~~~-------------------~-----------------------------~~----~~~i~~~ 387 (519)
+++++....+++.+-.-. . .+ -..+++.
T Consensus 254 ~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~ 333 (371)
T PF14664_consen 254 PEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEA 333 (371)
T ss_pred HHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHc
Confidence 556655555555442200 0 00 1234589
Q ss_pred CcHHHHHHHhhcC-CHHHHHHHHHHHHHh
Q 010064 388 GIASALLELTLLG-STLAQKRASRILECL 415 (519)
Q Consensus 388 G~i~~Ll~Ll~~g-s~~~~~~A~~~L~~l 415 (519)
|.++.|+++..+. ++....+|..+|..+
T Consensus 334 gL~~~L~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 334 GLLEALVELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred ChHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 9999999999987 888899998888755
No 56
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00014 Score=78.22 Aligned_cols=275 Identities=16% Similarity=0.170 Sum_probs=180.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
++.+++..++.++..|..|+.++-..-... ....+.. .-.++.|+.+-..+++++|...+.+|.-|... ...|..=
T Consensus 176 ipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev-r~dkl~p 252 (885)
T KOG2023|consen 176 IPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV-RPDKLVP 252 (885)
T ss_pred HHHHHHHHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh-cHHhccc
Confidence 788999999999999999999998744332 1222222 33677888887779999999999999998863 3333333
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--CCChHHHHHHhhcC----------C-----C-
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--SGAVPFLVKTLKNS----------D-----K- 274 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--~gai~~LV~lL~~~----------~-----~- 274 (519)
.-.++|+.++...++. +.++.-.|+-..+.++..+-.+..+.. ...||.|++-+... + +
T Consensus 253 hl~~IveyML~~tqd~---dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpD 329 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDV---DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPD 329 (885)
T ss_pred chHHHHHHHHHHccCc---chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCc
Confidence 3357899999998888 889988898888888888766666543 45677776533211 0 0
Q ss_pred -C-----------------------------------CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc----
Q 010064 275 -K-----------------------------------VSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML---- 314 (519)
Q Consensus 275 -~-----------------------------------~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL---- 314 (519)
+ .+-..+...+.+|--|+ .+.....++.++.+|
T Consensus 330 reeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 330 REEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHL 402 (885)
T ss_pred hhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHc
Confidence 0 00112222222222221 122233444444444
Q ss_pred CCHH--HHHHHHHHHHHhcCCcccHH-HHhhc-CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHcCc
Q 010064 315 GDME--LSERILSILSNLVSTPEGRK-AISRV-PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS-YGDRQAMIEAGI 389 (519)
Q Consensus 315 ~~~~--v~~~Al~~L~nLs~~~e~r~-~i~~~-~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~-~~~~~~i~~~G~ 389 (519)
.+++ ++|.+.-+|+.++. ++. -+... +..+|.|+.+|. ...|-++.-.||+|...+..- .+.++..+. .+
T Consensus 403 ~~~~W~vrEagvLAlGAIAE---GcM~g~~p~LpeLip~l~~~L~-DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pv 477 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAE---GCMQGFVPHLPELIPFLLSLLD-DKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PV 477 (885)
T ss_pred CcchhhhhhhhHHHHHHHHH---HHhhhcccchHHHHHHHHHHhc-cCccceeeeeeeeHhhhhhhHhcCChHhhhH-HH
Confidence 4554 78888888888874 332 23221 236788889998 678999999999998876531 111222211 24
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCccccc
Q 010064 390 ASALLELTLLGSTLAQKRASRILECLRVDKGKQVSGT 426 (519)
Q Consensus 390 i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~~~~~ 426 (519)
+..|+.-+.+++.++|+.|+.+.+-+-++.++...|+
T Consensus 478 L~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~ 514 (885)
T KOG2023|consen 478 LEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPY 514 (885)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHH
Confidence 5556666778999999999999999999988877764
No 57
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.00 E-value=1e-05 Score=56.49 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=37.8
Q ss_pred ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 010064 163 NSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLG 202 (519)
Q Consensus 163 ~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa 202 (519)
+++++..+.+.|++|+|+.+|+++++++++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999999997
No 58
>PTZ00429 beta-adaptin; Provisional
Probab=97.97 E-value=0.0033 Score=71.15 Aligned_cols=253 Identities=13% Similarity=0.056 Sum_probs=146.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
+..+.+.|.+.++-+|..|+.++.++-..+++ .+...|.++.|.++|...++.+...|+.+|..+...++. . .-.
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~-~-l~l 216 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE-K-IES 216 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-h-hHH
Confidence 44556667778888999999998888766543 234567888899999888999999999999998764332 1 122
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~ 293 (519)
..+.+..|+..+..- ++-.+-.++.+|.... +..... ....+..+...|++ .+..+...|+.++.++..
T Consensus 217 ~~~~~~~Ll~~L~e~---~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~----~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 217 SNEWVNRLVYHLPEC---NEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSH----QNPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHHHHHHHHhhcC---ChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcC----CCHHHHHHHHHHHHHhcC
Confidence 334566677766654 4555555555553321 211111 12345555666665 577888888888888875
Q ss_pred CCc-cHHHHHhcCcHHHHHHHcC-CHH------------------------------------HHHHHHHHHHHhcCCcc
Q 010064 294 FPS-NISFILETDLIRYLLEMLG-DME------------------------------------LSERILSILSNLVSTPE 335 (519)
Q Consensus 294 ~~~-n~~~l~~~g~v~~Lv~lL~-~~~------------------------------------v~~~Al~~L~nLs~~~e 335 (519)
..+ .....+-.....+|+.++. +++ ++...+.+|..|+.. +
T Consensus 286 ~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane-~ 364 (746)
T PTZ00429 286 RCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTP-S 364 (746)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCc-c
Confidence 421 1100000112233333332 222 444455555544432 2
Q ss_pred cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064 336 GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415 (519)
Q Consensus 336 ~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l 415 (519)
+-..|+ .-|.+.+. ..+.+....++.++..++..-+. .-..++..|++++..+...+ ..+...+..+
T Consensus 365 Nv~~IL------~EL~eYa~-d~D~ef~r~aIrAIg~lA~k~~~-----~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~I 431 (746)
T PTZ00429 365 VAPEIL------KELAEYAS-GVDMVFVVEVVRAIASLAIKVDS-----VAPDCANLLLQIVDRRPELL-PQVVTAAKDI 431 (746)
T ss_pred cHHHHH------HHHHHHhh-cCCHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHhcCCchhH-HHHHHHHHHH
Confidence 222222 23444444 34567777788888877765332 12346778888887655443 3566666666
Q ss_pred h
Q 010064 416 R 416 (519)
Q Consensus 416 ~ 416 (519)
-
T Consensus 432 l 432 (746)
T PTZ00429 432 V 432 (746)
T ss_pred H
Confidence 4
No 59
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.00034 Score=69.27 Aligned_cols=227 Identities=15% Similarity=0.134 Sum_probs=151.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhh
Q 010064 177 PPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPI 255 (519)
Q Consensus 177 ~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~ 255 (519)
..||.+|.+.++.++..|...|.+|..+ ..+...-. .-.++.+.+++... .+ .+.|+.+|.|+|.....+..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~---~~--~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL---DP--AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc---cc--ccHHHHHHHHHHhhHHHHHH
Confidence 4678999999999999999999999985 33333322 23588899998876 34 66778899999999988888
Q ss_pred hhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc------CcHHHHHHHcCCHH-----HHHHHH
Q 010064 256 IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET------DLIRYLLEMLGDME-----LSERIL 324 (519)
Q Consensus 256 I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~------g~v~~Lv~lL~~~~-----v~~~Al 324 (519)
+.+. .+.+++..+.+ .........+..|.||+..++....+... .++..|+....+.+ -.....
T Consensus 79 ll~~-~~k~l~~~~~~----p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA 153 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTD----PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLA 153 (353)
T ss_pred HHHH-HHHHHHHHhcC----cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHH
Confidence 8777 88899998877 34566777899999999988754443321 34445555443332 224566
Q ss_pred HHHHHhcCCcccHHHHhhcCCcch-hhhhhccCCCCHHHH-HHHHHHHHHHhcCChhhHHHHHH--cCcHHHHH------
Q 010064 325 SILSNLVSTPEGRKAISRVPDAFP-ILVDVLNWTDSPGCQ-EKASYVLMVMAHKSYGDRQAMIE--AGIASALL------ 394 (519)
Q Consensus 325 ~~L~nLs~~~e~r~~i~~~~g~i~-~Lv~lL~~s~~~~~q-e~A~~~L~nL~~~~~~~~~~i~~--~G~i~~Ll------ 394 (519)
-++.||+..+.+|+.+.. ...++ ..+-.+. +.+..++ ...+++|.|.|... .+...++. ..+.|.++
T Consensus 154 ~vf~nls~~~~gR~l~~~-~k~~p~~kll~ft-~~~s~vRr~GvagtlkN~cFd~-~~h~~lL~e~~~lLp~iLlPlagp 230 (353)
T KOG2973|consen 154 PVFANLSQFEAGRKLLLE-PKRFPDQKLLPFT-SEDSQVRRGGVAGTLKNCCFDA-KLHEVLLDESINLLPAILLPLAGP 230 (353)
T ss_pred HHHHHHhhhhhhhhHhcc-hhhhhHhhhhccc-ccchhhhccchHHHHHhhhccc-hhHHHHhcchHHHHHHHHhhcCCc
Confidence 788999999999998887 44222 2222223 2233444 45688999998874 33433332 23344333
Q ss_pred ---------------HHhh-----cCCHHHHHHHHHHHHHhhhc
Q 010064 395 ---------------ELTL-----LGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 395 ---------------~Ll~-----~gs~~~~~~A~~~L~~l~~~ 418 (519)
+++- .++|.+++.-..+|-+|+-.
T Consensus 231 ee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT 274 (353)
T KOG2973|consen 231 EELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT 274 (353)
T ss_pred cccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh
Confidence 2222 34677777777777777643
No 60
>PF05536 Neurochondrin: Neurochondrin
Probab=97.93 E-value=0.00086 Score=73.51 Aligned_cols=235 Identities=17% Similarity=0.133 Sum_probs=158.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh---hHHHHHhcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHh
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSE---TRVTLAMLGAIPPLAGMLDF-------QLADSQISSLYALLNL 201 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~---~r~~l~~~G~i~~Lv~lL~s-------~~~~~~~~a~~aL~NL 201 (519)
+.++..+++|+..+.+.|..++..+.++.+.++. .++.+.+.=+.+-|-++|++ +....+..|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4578888999999977888889999999987652 33345565556778888877 3456788899999999
Q ss_pred cCCChhhHHHHHhcCcHHHHHHhhcCCCCCCH-HHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHH
Q 010064 202 GIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP-SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQA 280 (519)
Q Consensus 202 a~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~-~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~ 280 (519)
+.. ++....---.+-||.|++++.+. +. .+...+..+|..++..++.+..+.+.|+|+.|++.+.+ .+..
T Consensus 85 ~~~-~~~a~~~~~~~~IP~Lle~l~~~---s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-----~~~~ 155 (543)
T PF05536_consen 85 CRD-PELASSPQMVSRIPLLLEILSSS---SDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-----QSFQ 155 (543)
T ss_pred cCC-hhhhcCHHHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-----Ccch
Confidence 983 65543333346799999999887 45 88899999999999999999999999999999999986 5566
Q ss_pred HHHHHHHHHHhcCCCccHHHHHh----cCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccH--HHHhh---cCCcchh
Q 010064 281 KQDALRALYNLSIFPSNISFILE----TDLIRYLLEMLGD--MELSERILSILSNLVSTPEGR--KAISR---VPDAFPI 349 (519)
Q Consensus 281 ~~~A~~aL~nLs~~~~n~~~l~~----~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r--~~i~~---~~g~i~~ 349 (519)
...|+.+|.++.........--. ...++.|-..+.. ...+...+..|.++-...+.. ..... .......
T Consensus 156 ~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~g 235 (543)
T PF05536_consen 156 MEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKG 235 (543)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHH
Confidence 88899999888765431110001 1233344433322 125556778887776633211 11111 0124455
Q ss_pred hhhhccCCCCHHHHHHHHHHHHHHhc
Q 010064 350 LVDVLNWTDSPGCQEKASYVLMVMAH 375 (519)
Q Consensus 350 Lv~lL~~s~~~~~qe~A~~~L~nL~~ 375 (519)
|..+|.+.-.+.-+..+..+...|..
T Consensus 236 l~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 236 LRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 66667644456666666655555544
No 61
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00081 Score=76.68 Aligned_cols=282 Identities=17% Similarity=0.169 Sum_probs=187.3
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKENS-ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL 207 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~-~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~ 207 (519)
.|.+.++.|++-.+++++..|..|+..|..+...-. ..+..+. .+.+.+.+.+..++..++..+++++...+...+.
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcc
Confidence 678889999999999999999999999999875421 2221111 1334445555555555999999999999987665
Q ss_pred hHHHHHhc-CcHHHHHHhh----cCCCCCCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCCCHHH
Q 010064 208 NKAAIVKA-GAVHKMLKLI----ESPVAPNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKVSPQA 280 (519)
Q Consensus 208 nk~~iv~a-G~v~~Lv~lL----~s~~~~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~~~~~ 280 (519)
++...... ..+|.++..+ +.+ +.+....+..+|-.+.....- ++.+ ...|.+-+++..+ .+-+..+
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~---d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n--~~l~~~~ 265 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDG---DDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKN--KELENSI 265 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhcc---chHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhc--ccccHHH
Confidence 56555553 3567666655 444 555566666677666654321 2222 3356666777766 3567889
Q ss_pred HHHHHHHHHHhcCCCc-cHHHH--HhcCcHHHHHHHcC----CH-----------H---HHHHHHHHHHHhcCCcccHHH
Q 010064 281 KQDALRALYNLSIFPS-NISFI--LETDLIRYLLEMLG----DM-----------E---LSERILSILSNLVSTPEGRKA 339 (519)
Q Consensus 281 ~~~A~~aL~nLs~~~~-n~~~l--~~~g~v~~Lv~lL~----~~-----------~---v~~~Al~~L~nLs~~~e~r~~ 339 (519)
|..|+..|..++.+.. .++.. .-.-.++.++.++. |+ + -...|..+|--|+..-.++..
T Consensus 266 R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v 345 (1075)
T KOG2171|consen 266 RHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV 345 (1075)
T ss_pred HHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe
Confidence 9999999999987733 22211 12234555555552 21 0 223566666666664333332
Q ss_pred HhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 010064 340 ISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK 419 (519)
Q Consensus 340 i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~ 419 (519)
+ +-.++.+-.++. +.+..-+.++.-+|..++-+..+.-... =..+++..+..+.++.|++|-.|+.++..++.|-
T Consensus 346 ~---p~~~~~l~~~l~-S~~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 346 L---PPLFEALEAMLQ-STEWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred h---HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 2 125566777788 6788899999999999887654433221 2467888999999999999999999999999887
Q ss_pred CCccc
Q 010064 420 GKQVS 424 (519)
Q Consensus 420 ~~~~~ 424 (519)
++.+.
T Consensus 421 ~p~iq 425 (1075)
T KOG2171|consen 421 QPEIQ 425 (1075)
T ss_pred cHHHH
Confidence 76665
No 62
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0012 Score=74.08 Aligned_cols=244 Identities=14% Similarity=0.155 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHhccChhhHHHHH----hcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHH
Q 010064 148 QRREAASKVRSLAKENSETRVTLA----MLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKML 222 (519)
Q Consensus 148 ~~~~Aa~~L~~La~~~~~~r~~l~----~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv 222 (519)
...-++.+|+|+.+.+++....+. ..|.++.++.+|++ .++.++..|+..+.-+.. +.++-.-++..|.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence 445688999999888876554443 36788888888876 788999999999887777 699999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC------------------------------
Q 010064 223 KLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS------------------------------ 272 (519)
Q Consensus 223 ~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~------------------------------ 272 (519)
.+|.+. +..++.++-+|..|+++++.-..-...|++.-+..++...
T Consensus 1820 ~lLHS~----PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1820 TLLHSQ----PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHhcC----hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 999986 7888888888888888776544444566665555444322
Q ss_pred --------------------------------------------------------------------------------
Q 010064 273 -------------------------------------------------------------------------------- 272 (519)
Q Consensus 273 -------------------------------------------------------------------------------- 272 (519)
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence
Q ss_pred --------------------------------------CCCCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHH
Q 010064 273 --------------------------------------DKKVSPQAKQDALRALYNLSIF-PSNISFILETDLIRYLLEM 313 (519)
Q Consensus 273 --------------------------------------~~~~~~~~~~~A~~aL~nLs~~-~~n~~~l~~~g~v~~Lv~l 313 (519)
.+............++..|... +.-...+-.-|-+|.++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 0001111111112222222222 2222333334666666655
Q ss_pred cCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcH
Q 010064 314 LGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY-GDRQAMIEAGIA 390 (519)
Q Consensus 314 L~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~G~i 390 (519)
+... .+-..|+++|..|+.+.-+..++.. ..++..++..|.. .+.....|+.+|..+..... +....+++.|.|
T Consensus 2056 m~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~-l~~i~~~m~~mkK--~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQNTSAPRSAIRVLHELSENQFCCDAMAQ-LPCIDGIMKSMKK--QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred HHhcCCcCcHHHHHHHHHHhhccHHHHHHhc-cccchhhHHHHHh--cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 5321 2446799999999999889999998 5788889998873 46777799999999987533 345567789999
Q ss_pred HHHHHHhhc
Q 010064 391 SALLELTLL 399 (519)
Q Consensus 391 ~~Ll~Ll~~ 399 (519)
|.|+.|+..
T Consensus 2133 pyLL~LLd~ 2141 (2235)
T KOG1789|consen 2133 PYLLQLLDS 2141 (2235)
T ss_pred HHHHHHhcc
Confidence 999999983
No 63
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.89 E-value=0.00051 Score=70.65 Aligned_cols=225 Identities=16% Similarity=0.210 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHH
Q 010064 144 ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKM 221 (519)
Q Consensus 144 ~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~L 221 (519)
.+.+...-|+++|..+.+.+ ++|..+....++..|+..|.+ .+-.+|-..+-+++-|+. ++...+.+-.-+.++.|
T Consensus 169 ~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L 246 (442)
T KOG2759|consen 169 TNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDL 246 (442)
T ss_pred CCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHH
Confidence 45666777889999999876 999999999999999998843 567899999999999999 47777777667899999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHhccCCC---Chh----hhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHH-------
Q 010064 222 LKLIESPVAPNPSVSEAIVANFLGLSALDS---NKP----IIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRA------- 287 (519)
Q Consensus 222 v~lL~s~~~~~~~~~~~a~~aL~~LS~~~~---~k~----~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~a------- 287 (519)
..+++... .+.+...+++++.|+-...+ .+. .++..+ ++.-++.|... .=.+.++..+.-..
T Consensus 247 ~~Ivk~~~--KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~r-kysDEDL~~di~~L~e~L~~s 322 (442)
T KOG2759|consen 247 SDIVKEST--KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEER-KYSDEDLVDDIEFLTEKLKNS 322 (442)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHH
Confidence 99998763 57788889999999876553 222 233344 55555555542 11233332222111
Q ss_pred HHHhcCCCc------------------------cHHHHHhc--CcHHHHHHHcC---CHHHHHHHHHHHHHhcC-CcccH
Q 010064 288 LYNLSIFPS------------------------NISFILET--DLIRYLLEMLG---DMELSERILSILSNLVS-TPEGR 337 (519)
Q Consensus 288 L~nLs~~~~------------------------n~~~l~~~--g~v~~Lv~lL~---~~~v~~~Al~~L~nLs~-~~e~r 337 (519)
..-|++.++ |...+-+. ..+..|+.+|. |+-+..-||.=++.... +|+++
T Consensus 323 vq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk 402 (442)
T KOG2759|consen 323 VQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGK 402 (442)
T ss_pred HHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHh
Confidence 122333211 34444444 46788888884 34466678888888888 89999
Q ss_pred HHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 338 KAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 338 ~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
..+.. -|+=..++++|+ +++|.++-+|..++-.|..+
T Consensus 403 ~vv~k-~ggKe~vM~Lln-h~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 403 AVVEK-YGGKERVMNLLN-HEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHH-hchHHHHHHHhc-CCCchHHHHHHHHHHHHHhh
Confidence 98888 799999999999 68999999999888777643
No 64
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.80 E-value=4.2e-05 Score=53.41 Aligned_cols=40 Identities=35% Similarity=0.548 Sum_probs=37.9
Q ss_pred ChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 205 NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS 247 (519)
Q Consensus 205 ~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS 247 (519)
+++++..+++.|++|.|+++|+++ +..+++.++|+|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~---~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP---DPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS---SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC---CHHHHHHHHHHHHHHh
Confidence 478999999999999999999988 8999999999999987
No 65
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.80 E-value=0.0038 Score=67.00 Aligned_cols=233 Identities=18% Similarity=0.175 Sum_probs=159.4
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhcCCChhhHHHHHhc-C
Q 010064 143 SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQ-----LADSQISSLYALLNLGIGNDLNKAAIVKA-G 216 (519)
Q Consensus 143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~-----~~~~~~~a~~aL~NLa~~~~~nk~~iv~a-G 216 (519)
..+.+...+|+++|+|+...++..|..+.+.|..+.++..|+.. +.+...-..+.|+=++......+..+++. +
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 44678899999999999989999999999999999999999875 78888999999999988777777666664 7
Q ss_pred cHHHHHHhhc----CCCC----------CCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC-----CCCCC
Q 010064 217 AVHKMLKLIE----SPVA----------PNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS-----DKKVS 277 (519)
Q Consensus 217 ~v~~Lv~lL~----s~~~----------~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~-----~~~~~ 277 (519)
++..|...|. .... .+......++.+++|+.........-.....++.|+.++... .+...
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 7777766542 1100 023345567888899876644332212355677777665432 12234
Q ss_pred HHHHHHHHHHHHHhcCCCc-c-------H----HHHHhcCcHHHHHHHcC-------C---HHHHHHHHHHHHHhcC-Cc
Q 010064 278 PQAKQDALRALYNLSIFPS-N-------I----SFILETDLIRYLLEMLG-------D---MELSERILSILSNLVS-TP 334 (519)
Q Consensus 278 ~~~~~~A~~aL~nLs~~~~-n-------~----~~l~~~g~v~~Lv~lL~-------~---~~v~~~Al~~L~nLs~-~~ 334 (519)
......++.+|.|+=.... . . ........+..|+.+|. + .+.....+.+|.+++. ..
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 5567778888888722110 0 0 00112245677777772 1 1366788888888888 45
Q ss_pred ccHHHHhh---------------cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 335 EGRKAISR---------------VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 335 e~r~~i~~---------------~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
..|+.+.. ....-..|+.++.+.. +.++..+...|..||..
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~-~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD-PQLKDAVAELLFVLCKE 338 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC-chHHHHHHHHHHHHHhh
Confidence 55555432 2345678899998544 99999999999999964
No 66
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0071 Score=60.55 Aligned_cols=282 Identities=13% Similarity=0.166 Sum_probs=190.8
Q ss_pred hcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH--HhhcCCCHHHHHHHHHHHHHhcCC
Q 010064 127 KEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA--GMLDFQLADSQISSLYALLNLGIG 204 (519)
Q Consensus 127 ~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv--~lL~s~~~~~~~~a~~aL~NLa~~ 204 (519)
..+. ++.++..+..+|.++-..|...|..++.. +..-..+.+.....++- .+-..-+.-++......+..+..-
T Consensus 126 Naei---lklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi 201 (524)
T KOG4413|consen 126 NAEI---LKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI 201 (524)
T ss_pred hhhH---HHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc
Confidence 5555 88999999888988888899999998865 34444454555554442 222224455677778888888877
Q ss_pred ChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC------------
Q 010064 205 NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS------------ 272 (519)
Q Consensus 205 ~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~------------ 272 (519)
++......-+.|.+..|..=|+... +.-+...++-....|......++.+.+.|.|..+..++...
T Consensus 202 SpesaneckkSGLldlLeaElkGte--DtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralm 279 (524)
T KOG4413|consen 202 SPESANECKKSGLLDLLEAELKGTE--DTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALM 279 (524)
T ss_pred CHHHHhHhhhhhHHHHHHHHhcCCc--ceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHH
Confidence 8888888888999999988887632 44555666666677777666677777777776666655332
Q ss_pred ---------------------------------CCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCc--HHHHHHHcCCH
Q 010064 273 ---------------------------------DKKVSPQAKQDALRALYNLSIFPSNISFILETDL--IRYLLEMLGDM 317 (519)
Q Consensus 273 ---------------------------------~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~--v~~Lv~lL~~~ 317 (519)
....+++.+..|+.+|.-|-++.+..+.+...|- ...|+.-..+.
T Consensus 280 gfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdq 359 (524)
T KOG4413|consen 280 GFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQ 359 (524)
T ss_pred HHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcc
Confidence 1347888899999999999988888888888764 55565555443
Q ss_pred H---HHHHHHHHHHHhcCC----c----ccHHH------Hhhc---C---CcchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064 318 E---LSERILSILSNLVST----P----EGRKA------ISRV---P---DAFPILVDVLNWTDSPGCQEKASYVLMVMA 374 (519)
Q Consensus 318 ~---v~~~Al~~L~nLs~~----~----e~r~~------i~~~---~---g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~ 374 (519)
. -++.++.+|.+++.. + +++.. +.+. . .-...+..+++ ...|++.-.+..++..++
T Consensus 360 nahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilq-QpfpEihcAalktfTAia 438 (524)
T KOG4413|consen 360 NAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQ-QPFPEIHCAALKTFTAIA 438 (524)
T ss_pred cccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHc-CCChhhHHHHHHHHHHHH
Confidence 2 567888888888761 1 11111 1110 0 11233445555 457889999999999999
Q ss_pred cCChhhHHHHHHcCcHHHHHHHhhcC---CHHHHHHHHHHHHHh
Q 010064 375 HKSYGDRQAMIEAGIASALLELTLLG---STLAQKRASRILECL 415 (519)
Q Consensus 375 ~~~~~~~~~i~~~G~i~~Ll~Ll~~g---s~~~~~~A~~~L~~l 415 (519)
..++..+..+..+|.|....+-.... ..+++-..++++++-
T Consensus 439 aqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiaea 482 (524)
T KOG4413|consen 439 AQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEA 482 (524)
T ss_pred cCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHH
Confidence 99888888888888877665554432 334555666666543
No 67
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.02 Score=59.52 Aligned_cols=255 Identities=16% Similarity=0.136 Sum_probs=176.0
Q ss_pred ccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh---------hhHHHHHhcCCHHHHHHhhcC
Q 010064 115 LAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENS---------ETRVTLAMLGAIPPLAGMLDF 185 (519)
Q Consensus 115 ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~---------~~r~~l~~~G~i~~Lv~lL~s 185 (519)
++..+.-...+++..+ ++.++.+|.+.|.++-+..+..++.|+..|. ..-+.+++.++++.||+-+..
T Consensus 111 lAt~PdLYp~lveln~---V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveR 187 (536)
T KOG2734|consen 111 LATMPDLYPILVELNA---VQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVER 187 (536)
T ss_pred hhcChHHHHHHHHhcc---HHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444444444555555 9999999999999999999999999996652 234566678899999988754
Q ss_pred CC------HHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhh
Q 010064 186 QL------ADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGS 258 (519)
Q Consensus 186 ~~------~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~ 258 (519)
-+ ..-...++..+-|+..-.+.....+++.|.+..|+.-+....+ -..-...+.-+|.-+-.+. +++.....
T Consensus 188 LdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~-f~aNk~YasEiLaillq~s~e~~~~~~~ 266 (536)
T KOG2734|consen 188 LDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAA-FDANKQYASEILAILLQNSDENRKLLGP 266 (536)
T ss_pred hhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccC-cchhHHHHHHHHHHHhccCchhhhhhcC
Confidence 22 2344667888889988778888899999999999886554322 2233444544555444443 47888888
Q ss_pred CCChHHHHHHhhcC---CC--CCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH-HHHHHHHHHHHhcC
Q 010064 259 SGAVPFLVKTLKNS---DK--KVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME-LSERILSILSNLVS 332 (519)
Q Consensus 259 ~gai~~LV~lL~~~---~~--~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~-v~~~Al~~L~nLs~ 332 (519)
-.+|..|++-+.-. +| -...+...+...+|+.+...+.|+..++...+++-..-++.... ..-.++.+|-.+..
T Consensus 267 l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~ 346 (536)
T KOG2734|consen 267 LDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMF 346 (536)
T ss_pred cccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 88899988766321 11 13466788899999999999999999999988886665665544 56689999998887
Q ss_pred Ccc---cHHHHhhcCCcchhhhh-hccCCC---------CHHHHHHHHHHHHHHhc
Q 010064 333 TPE---GRKAISRVPDAFPILVD-VLNWTD---------SPGCQEKASYVLMVMAH 375 (519)
Q Consensus 333 ~~e---~r~~i~~~~g~i~~Lv~-lL~~s~---------~~~~qe~A~~~L~nL~~ 375 (519)
.++ ++..+++ ..++..++- +++ .. ..+.-++.+.+|+.|-.
T Consensus 347 g~~gt~~C~kfVe-~lGLrtiF~~FMk-~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 347 GPEGTPNCNKFVE-ILGLRTIFPLFMK-TPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred CCCchHHHHHHHH-HHhHHHHHHHHhh-CccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 554 5556666 355555544 342 22 23345666777666654
No 68
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.62 E-value=0.0059 Score=64.60 Aligned_cols=57 Identities=16% Similarity=0.035 Sum_probs=40.8
Q ss_pred CcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 345 DAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 345 g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
..+..|..++.. +.++..++++|..+-.. ..++.|++.+.+. .++..|..++..+..
T Consensus 240 ~a~~~L~~ll~d---~~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~--~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 240 DAQAWLRELLQA---AATRREALRAVGLVGDV-----------EAAPWCLEAMREP--PWARLAGEAFSLITG 296 (410)
T ss_pred hHHHHHHHHhcC---hhhHHHHHHHHHHcCCc-----------chHHHHHHHhcCc--HHHHHHHHHHHHhhC
Confidence 355666677762 44777888888766543 3788888887755 388889999998884
No 69
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.013 Score=60.92 Aligned_cols=239 Identities=21% Similarity=0.193 Sum_probs=171.4
Q ss_pred HHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-----Chhh----HHHHHhcCcHHHH
Q 010064 151 EAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIG-----NDLN----KAAIVKAGAVHKM 221 (519)
Q Consensus 151 ~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~-----~~~n----k~~iv~aG~v~~L 221 (519)
.....++.++ .-|+.--.+.+..+|+.|+.+|.+++.++-.+.+..|..|.-. +++. -..+++.++++.|
T Consensus 103 d~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 3556666677 4467777889999999999999999999999999999999832 1222 3456677899999
Q ss_pred HHhhcCCCCCCHHHHHHH------HHHHHHhccC-CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC
Q 010064 222 LKLIESPVAPNPSVSEAI------VANFLGLSAL-DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF 294 (519)
Q Consensus 222 v~lL~s~~~~~~~~~~~a------~~aL~~LS~~-~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~ 294 (519)
++.+..- +.++.+.+ .+.+-|+..- ++....+++.|.+.+|+.-+... ..-..-...|...|.-+..+
T Consensus 182 vqnveRL---dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k--~~f~aNk~YasEiLaillq~ 256 (536)
T KOG2734|consen 182 VQNVERL---DESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGK--AAFDANKQYASEILAILLQN 256 (536)
T ss_pred HHHHHHh---hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcc--cCcchhHHHHHHHHHHHhcc
Confidence 9988765 55566554 4455555443 34566677788888888754431 13345577888888887766
Q ss_pred Cc-cHHHHHhcCcHHHHHHHc-----CC------HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHH
Q 010064 295 PS-NISFILETDLIRYLLEML-----GD------MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGC 362 (519)
Q Consensus 295 ~~-n~~~l~~~g~v~~Lv~lL-----~~------~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~ 362 (519)
.+ ++..+-.-.++..|++-+ .+ .+..++...+|+.+...+++|..+.. +.++....-++. . ....
T Consensus 257 s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lmlr-~-Kk~s 333 (536)
T KOG2734|consen 257 SDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQLMNLMLR-E-KKVS 333 (536)
T ss_pred CchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHHHHHHHH-H-HHHh
Confidence 65 777777778999988877 22 23778888888888889999999998 455554444444 2 4556
Q ss_pred HHHHHHHHHHHhcCCh--hhHHHHHHcCcHHHHHHHhh
Q 010064 363 QEKASYVLMVMAHKSY--GDRQAMIEAGIASALLELTL 398 (519)
Q Consensus 363 qe~A~~~L~nL~~~~~--~~~~~i~~~G~i~~Ll~Ll~ 398 (519)
+..+..+|-..+.+++ .++..+.+.++...+..++-
T Consensus 334 r~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 334 RGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 6678888888888766 67888888777666655555
No 70
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.58 E-value=0.0045 Score=66.40 Aligned_cols=272 Identities=15% Similarity=0.121 Sum_probs=175.3
Q ss_pred HHHHHHHHhccChhhHHHHHhcCCHHHHHHhh----------cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHH
Q 010064 152 AASKVRSLAKENSETRVTLAMLGAIPPLAGML----------DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKM 221 (519)
Q Consensus 152 Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL----------~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~L 221 (519)
|+.+|+.|+++. .....+....++..|+.+- ...+..+...|+++|+|+...++..+..+++.|..+.+
T Consensus 1 ~L~~LRiLsRd~-~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSRDP-TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHccCc-ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 356677777653 5666666666677776665 33678899999999999999999999999999999999
Q ss_pred HHhhcCCCCC--CHHHHHHHHHHHHHhccC-CCChhhhhh-CCChHHHHHHhhcCC------C-------CCCHHHHHHH
Q 010064 222 LKLIESPVAP--NPSVSEAIVANFLGLSAL-DSNKPIIGS-SGAVPFLVKTLKNSD------K-------KVSPQAKQDA 284 (519)
Q Consensus 222 v~lL~s~~~~--~~~~~~~a~~aL~~LS~~-~~~k~~I~~-~gai~~LV~lL~~~~------~-------~~~~~~~~~A 284 (519)
+..|+...+. +.++.-....+|+-++.. .+.+..+.+ .+++..|+..|.... . ..+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999876331 466777777877777654 345666665 578888877664320 0 1356678889
Q ss_pred HHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--------C---HHHHHHHHHHHHHhcC-Cccc-------HHHH---hh
Q 010064 285 LRALYNLSIFPSNISFILETDLIRYLLEMLG--------D---MELSERILSILSNLVS-TPEG-------RKAI---SR 342 (519)
Q Consensus 285 ~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--------~---~~v~~~Al~~L~nLs~-~~e~-------r~~i---~~ 342 (519)
+.+|.|+..+......--....++.|+.+|. + ......++.+|.||-. ..+. ...+ ..
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 9999999876543222122344555554431 1 1267788888888732 1111 0000 01
Q ss_pred cCCcchhhhhhccC----CCCHHHHHH---HHHHHHHHhcCChhhHHHHHH----------------cCcHHHHHHHhhc
Q 010064 343 VPDAFPILVDVLNW----TDSPGCQEK---ASYVLMVMAHKSYGDRQAMIE----------------AGIASALLELTLL 399 (519)
Q Consensus 343 ~~g~i~~Lv~lL~~----s~~~~~qe~---A~~~L~nL~~~~~~~~~~i~~----------------~G~i~~Ll~Ll~~ 399 (519)
....+..|+++|.. .....+.+. .+.+|.+++..+...|+.+.. ...-..|++++.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 12456667777642 111122222 355666666665555555543 2345579999999
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCccc
Q 010064 400 GSTLAQKRASRILECLRVDKGKQVS 424 (519)
Q Consensus 400 gs~~~~~~A~~~L~~l~~~~~~~~~ 424 (519)
..+.++..+..+|-.|++....+..
T Consensus 320 ~~~~~k~~vaellf~Lc~~d~~~~v 344 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCKEDASRFV 344 (446)
T ss_pred CCchHHHHHHHHHHHHHhhhHHHHH
Confidence 8899999999999999865544443
No 71
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.011 Score=59.33 Aligned_cols=267 Identities=12% Similarity=0.131 Sum_probs=173.6
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccCh--hhHH--HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhc
Q 010064 140 DLQSESEEQRREAASKVRSLAKENS--ETRV--TLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215 (519)
Q Consensus 140 ~L~s~~~~~~~~Aa~~L~~La~~~~--~~r~--~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a 215 (519)
-|..++..+|..|+..+..+..+.. .... .++..|..+.++.++-..+.++-.+|...+..++. .+..-..+++.
T Consensus 90 GLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeS 168 (524)
T KOG4413|consen 90 GLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFES 168 (524)
T ss_pred cccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhccc
Confidence 3456678899999988888775533 2222 23468999999999999999999999999999999 48888888888
Q ss_pred CcHHHHHHh---hcCCCCCCHHHHHHHHHHHHHhcc-CCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 216 GAVHKMLKL---IESPVAPNPSVSEAIVANFLGLSA-LDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 216 G~v~~Lv~l---L~s~~~~~~~~~~~a~~aL~~LS~-~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
..++.+-.. .+.. .-++-.....+..+++ .++.....-.+|.+..|..-|+.. .+.-++.+++...+.|
T Consensus 169 ellDdlhlrnlaakcn----diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt---eDtLVianciElvteL 241 (524)
T KOG4413|consen 169 ELLDDLHLRNLAAKCN----DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT---EDTLVIANCIELVTEL 241 (524)
T ss_pred ccCChHHHhHHHhhhh----hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC---cceeehhhHHHHHHHH
Confidence 776655332 2332 3334444444444433 333444444688888888887763 5667888899999999
Q ss_pred cCCCccHHHHHhcCcHHHHHHHcC--CH-H-HHHHHHHHHHHhcC----CcccHHHHhhc-CCcchhhhhhccCCCCHHH
Q 010064 292 SIFPSNISFILETDLIRYLLEMLG--DM-E-LSERILSILSNLVS----TPEGRKAISRV-PDAFPILVDVLNWTDSPGC 362 (519)
Q Consensus 292 s~~~~n~~~l~~~g~v~~Lv~lL~--~~-~-v~~~Al~~L~nLs~----~~e~r~~i~~~-~g~i~~Lv~lL~~s~~~~~ 362 (519)
+.....+.++.+.|.|+.+++++. |. + -...++.....+-. .+-.-++++.. .-++...++++. ..+|..
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE-mnDpda 320 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE-MNDPDA 320 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh-cCCchH
Confidence 988888899999999999999993 22 2 23345555444433 11111222210 124556677777 678999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHcCc--HHHHHHHhhcCCHHH-HHHHHHHHHHhh
Q 010064 363 QEKASYVLMVMAHKSYGDRQAMIEAGI--ASALLELTLLGSTLA-QKRASRILECLR 416 (519)
Q Consensus 363 qe~A~~~L~nL~~~~~~~~~~i~~~G~--i~~Ll~Ll~~gs~~~-~~~A~~~L~~l~ 416 (519)
++.|+-+|..|.... +..+.+...|- ...|+.-..+.+... +..+..+|.++.
T Consensus 321 ieaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 321 IEAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred HHHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 999999999988763 44565655543 233333223333332 444556666665
No 72
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.013 Score=64.53 Aligned_cols=275 Identities=14% Similarity=0.115 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHhc--CCCHHHHHHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCh
Q 010064 130 ALEELKIVVKDLQ--SESEEQRREAASKVRS-LAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGND 206 (519)
Q Consensus 130 ~~~~l~~Lv~~L~--s~~~~~~~~Aa~~L~~-La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~ 206 (519)
.+..+..++.-.. .++..+|..|..+|.+ |-.....+-...-..-+....++.-++++.+++.+|..+|..+..-..
T Consensus 170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 3444677777554 3356788889999887 322221111112223345566677778999999999999999887544
Q ss_pred hhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc----------------cCCC-Chhhhh--hCCChHHHHH
Q 010064 207 LNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS----------------ALDS-NKPIIG--SSGAVPFLVK 267 (519)
Q Consensus 207 ~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS----------------~~~~-~k~~I~--~~gai~~LV~ 267 (519)
+.-..-.+...+..-+.-++++ +.++.-.++-.-.++. ..++ ++.... -++.+|.|++
T Consensus 250 ~~m~~yM~~alfaitl~amks~---~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~ 326 (859)
T KOG1241|consen 250 EFMEPYMEQALFAITLAAMKSD---NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE 326 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence 4444444555667777778887 7777665532111121 1111 111111 2578899999
Q ss_pred HhhcCC---CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH----HcCCHH--HHHHHHHHHHHhcCCcc--c
Q 010064 268 TLKNSD---KKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLE----MLGDME--LSERILSILSNLVSTPE--G 336 (519)
Q Consensus 268 lL~~~~---~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~----lL~~~~--v~~~Al~~L~nLs~~~e--~ 336 (519)
+|...+ ..++-..-..|-.+|.-++.. +....+++.+. -+..++ -++.|..+++.+-..++ .
T Consensus 327 ~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~ 399 (859)
T KOG1241|consen 327 LLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDK 399 (859)
T ss_pred HHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhh
Confidence 887631 112223445555555544422 22233444443 445666 56788888888776444 3
Q ss_pred HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH-HHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064 337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR-QAMIEAGIASALLELTLLGSTLAQKRASRILECL 415 (519)
Q Consensus 337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~-~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l 415 (519)
.+.++. ++++.++.++. ..+--+++.++|+|+.++..-++.+ ........++.|++=+. ..|++-..++|++-.|
T Consensus 400 Lt~iV~--qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~L 475 (859)
T KOG1241|consen 400 LTPIVI--QALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISL 475 (859)
T ss_pred hhHHHh--hhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHH
Confidence 344554 69999999998 6677788999999999997655322 22333445555554444 4689999999999999
Q ss_pred hhc
Q 010064 416 RVD 418 (519)
Q Consensus 416 ~~~ 418 (519)
.+.
T Consensus 476 aea 478 (859)
T KOG1241|consen 476 AEA 478 (859)
T ss_pred HHH
Confidence 964
No 73
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.49 E-value=0.003 Score=65.70 Aligned_cols=172 Identities=10% Similarity=0.131 Sum_probs=131.8
Q ss_pred hHHHHHhcCCHHHHHHhhcCCCHH--HHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 166 TRVTLAMLGAIPPLAGMLDFQLAD--SQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANF 243 (519)
Q Consensus 166 ~r~~l~~~G~i~~Lv~lL~s~~~~--~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL 243 (519)
..+.+...|++..|+.|+..++.+ ++..|.+.|-.+.+ .+|+..++..| +..++.+-+... .++.+...+++|
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e--~~e~aR~~~~il 246 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKERE--PVELARSVAGIL 246 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcC--cHHHHHHHHHHH
Confidence 445566789999999999998765 48999999999887 78888888877 444444433321 478888889999
Q ss_pred HHhccCCC-ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHHcCCHH--
Q 010064 244 LGLSALDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS--NISFILETDLIRYLLEMLGDME-- 318 (519)
Q Consensus 244 ~~LS~~~~-~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~--n~~~l~~~g~v~~Lv~lL~~~~-- 318 (519)
-++-.+.+ ....++..|++..++-.+.. .++.+...++-+|.|++.+.. .+..+++..+-.-|..+--+.+
T Consensus 247 ~~mFKHSeet~~~Lvaa~~lD~vl~~~rR----t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel 322 (832)
T KOG3678|consen 247 EHMFKHSEETCQRLVAAGGLDAVLYWCRR----TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDEL 322 (832)
T ss_pred HHHhhhhHHHHHHHHhhcccchheeeccc----CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHH
Confidence 99877654 47778899999999888877 789999999999999998754 6777888877777766653333
Q ss_pred HHHHHHHHHHHhcCCcccHHHHhhcCCcc
Q 010064 319 LSERILSILSNLVSTPEGRKAISRVPDAF 347 (519)
Q Consensus 319 v~~~Al~~L~nLs~~~e~r~~i~~~~g~i 347 (519)
++..||-+.+-|+.+.+.-..+.. .|.+
T Consensus 323 ~R~~AClAV~vlat~KE~E~~Vrk-S~Tl 350 (832)
T KOG3678|consen 323 LRLHACLAVAVLATNKEVEREVRK-SGTL 350 (832)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHhh-ccch
Confidence 778899999999987776666655 4433
No 74
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.057 Score=61.37 Aligned_cols=144 Identities=20% Similarity=0.203 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHhcCCC-ccHHHHH----hcCcHHHHHHHc---CCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchh
Q 010064 278 PQAKQDALRALYNLSIFP-SNISFIL----ETDLIRYLLEML---GDMELSERILSILSNLVSTPEGRKAISRVPDAFPI 349 (519)
Q Consensus 278 ~~~~~~A~~aL~nLs~~~-~n~~~l~----~~g~v~~Lv~lL---~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~ 349 (519)
..-...++.+|.||.... +-...+- -.|.++-+...| +++.++.-|+.++.-++++.++-..++. .+.+..
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-CNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh-hhHHHH
Confidence 335667899999997654 4332222 236666666666 5677999999999999999999999998 689999
Q ss_pred hhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC--CCccc
Q 010064 350 LVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK--GKQVS 424 (519)
Q Consensus 350 Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~--~~~~~ 424 (519)
|+.+|++ -|..++.+..+|+.|+..+.-.++++..-|.+..+--+....++..+..|+.+|+.|..|+ ++++.
T Consensus 1818 LL~lLHS--~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ 1892 (2235)
T KOG1789|consen 1818 LLTLLHS--QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVT 1892 (2235)
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCcee
Confidence 9999983 6889999999999999875444444444444444434445667889999999999999774 45543
No 75
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0036 Score=68.64 Aligned_cols=231 Identities=13% Similarity=0.134 Sum_probs=145.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH-----
Q 010064 135 KIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK----- 209 (519)
Q Consensus 135 ~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk----- 209 (519)
+...+.-.+++.+++..|..+|.++..-.-++-..-.....+..-+.-.+++++++...+...=.++|. +++.
T Consensus 220 qvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstice--EEiD~~~e~ 297 (859)
T KOG1241|consen 220 QVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE--EEIDLAIEY 297 (859)
T ss_pred eeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 334444456678888999999988775432222222223334444555678999999888888888874 3332
Q ss_pred HHHHh---------------cCcHHHHHHhhcCCCC-CCHH---HHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhh
Q 010064 210 AAIVK---------------AGAVHKMLKLIESPVA-PNPS---VSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLK 270 (519)
Q Consensus 210 ~~iv~---------------aG~v~~Lv~lL~s~~~-~~~~---~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~ 270 (519)
...++ .+++|.|+++|....+ ++.+ ...+|...|--++.. .+..|.. -++|++-.-++
T Consensus 298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--~~D~Iv~-~Vl~Fiee~i~ 374 (859)
T KOG1241|consen 298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--VGDDIVP-HVLPFIEENIQ 374 (859)
T ss_pred HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--hcccchh-hhHHHHHHhcC
Confidence 11111 2678889998865321 1111 222222222222211 1111211 23444444444
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCc
Q 010064 271 NSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDA 346 (519)
Q Consensus 271 ~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~ 346 (519)
+ .+-.-+..|+.++..+-.+++ .+..-+..+++|.++.++.|+. +..-+.|+|+.++. .++.+....-....
T Consensus 375 ~----pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~ 450 (859)
T KOG1241|consen 375 N----PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSK 450 (859)
T ss_pred C----cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHH
Confidence 4 688889999999999998887 5666667899999999999876 66789999999987 44433322222456
Q ss_pred chhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 347 FPILVDVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 347 i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
++.+++-|+ +.|.+..++||++.+|+..
T Consensus 451 l~~l~~gL~--DePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 451 LSALLEGLN--DEPRVASNVCWAFISLAEA 478 (859)
T ss_pred HHHHHHHhh--hCchHHHHHHHHHHHHHHH
Confidence 777777777 4799999999999999943
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.41 E-value=0.013 Score=61.92 Aligned_cols=188 Identities=16% Similarity=0.085 Sum_probs=118.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
+..|++.|...+..++..++..|..+-. .++.+.|+.+|++.++.++..++.++...-
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~----------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR----------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence 6778888877777788777777754331 224567777777777777777766665521
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~ 293 (519)
....+.|..+|+++ ++.++..|+.+|-.+- ...+++.|...+.. .++.++..|+.+|..+-.
T Consensus 146 -~~~~~~L~~~L~d~---d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d----~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 146 -HDPGPALEAALTHE---DALVRAAALRALGELP----------RRLSESTLRLYLRD----SDPEVRFAALEAGLLAGS 207 (410)
T ss_pred -cChHHHHHHHhcCC---CHHHHHHHHHHHHhhc----------cccchHHHHHHHcC----CCHHHHHHHHHHHHHcCC
Confidence 12345677777766 6777777777766553 23355666666665 577777777777765533
Q ss_pred CCccHHHHHh----------------------cCcHHHHHHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhh
Q 010064 294 FPSNISFILE----------------------TDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILV 351 (519)
Q Consensus 294 ~~~n~~~l~~----------------------~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv 351 (519)
+.....+.. ..++..|..++.++.++..++.+|+.+- + ...++.|+
T Consensus 208 -~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~vr~~a~~AlG~lg----------~-p~av~~L~ 275 (410)
T TIGR02270 208 -RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAATRREALRAVGLVG----------D-VEAAPWCL 275 (410)
T ss_pred -HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChhhHHHHHHHHHHcC----------C-cchHHHHH
Confidence 111111110 1344555555555556666666665432 2 56888999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 352 DVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 352 ~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
+.+.. +.+...|-+++..++--
T Consensus 276 ~~l~d---~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 276 EAMRE---PPWARLAGEAFSLITGM 297 (410)
T ss_pred HHhcC---cHHHHHHHHHHHHhhCC
Confidence 99872 45888999999988853
No 77
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.36 E-value=0.021 Score=59.70 Aligned_cols=252 Identities=16% Similarity=0.103 Sum_probs=164.4
Q ss_pred HHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHH
Q 010064 155 KVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPS 234 (519)
Q Consensus 155 ~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~ 234 (519)
.|..|.+..+..+..+.-.-..+.+..++-+++.+++..+.++++.+..+ +..-..+.+.++--.++..|..+.. +..
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~-~~~ 83 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNK-NDV 83 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCC-ChH
Confidence 34445555666665554444455555556566699999999999999994 8888888888876666777765532 334
Q ss_pred HHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc
Q 010064 235 VSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML 314 (519)
Q Consensus 235 ~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL 314 (519)
-+++|...+..+-........ ...|.+..+|.+... .+...+..|+.+|..|+..+. ..+..+|+++.|+..+
T Consensus 84 ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~----~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l 156 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEH----EDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRAL 156 (371)
T ss_pred HHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhC----CchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHH
Confidence 467787666555443322222 356788999999887 688899999999999987542 3456789999999988
Q ss_pred CCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCC------CCH--HHHHHHHHHHHHHhcCChhhHHHH
Q 010064 315 GDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWT------DSP--GCQEKASYVLMVMAHKSYGDRQAM 384 (519)
Q Consensus 315 ~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s------~~~--~~qe~A~~~L~nL~~~~~~~~~~i 384 (519)
.++ ++.+..+.++..|-.+|..|+-+.. .--+..++.-.... ++. +.-..+..++..+-..=++..-.-
T Consensus 157 ~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 157 IDGSFSISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HhccHhHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 653 4888999999999999999986654 22233333322211 122 123334444444433212211111
Q ss_pred H-HcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 385 I-EAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 385 ~-~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
. ...++..|++.+..+++.+++....++--+-
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 1247888999999999999888666665544
No 78
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.35 E-value=0.00079 Score=54.71 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=71.5
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChh
Q 010064 176 IPPLAGML-DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKP 254 (519)
Q Consensus 176 i~~Lv~lL-~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~ 254 (519)
||.|++.| +++++.++..++++|.++.. + .+++.|+.+++++ ++.++..++.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~---~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDE---DPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSS---SHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCC---CHHHHHHHHHHHHHhC-------
Confidence 68899999 78999999999999995532 1 3589999999887 8999999999988772
Q ss_pred hhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064 255 IIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY 289 (519)
Q Consensus 255 ~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~ 289 (519)
...+++.|++++.+. .+..++..|+.+|.
T Consensus 60 ---~~~~~~~L~~~l~~~---~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDD---DDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC----SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCC---CcHHHHHHHHhhcC
Confidence 455899999999884 56777898988874
No 79
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.33 E-value=0.00056 Score=47.10 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=36.2
Q ss_pred hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 010064 165 ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGI 203 (519)
Q Consensus 165 ~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~ 203 (519)
+++..+.+.|++++|+.+|.+++++++..++++|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 578889999999999999999999999999999999973
No 80
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0014 Score=69.29 Aligned_cols=195 Identities=11% Similarity=0.081 Sum_probs=140.0
Q ss_pred HHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhc
Q 010064 193 SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKN 271 (519)
Q Consensus 193 ~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~ 271 (519)
+++..|..++..-.--|.-+.+..++++|+++|.++ +.-+..-+...++|+..-= +.+..+...|.|..|+.++.+
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P---eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP---EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc---cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 344455555543222366677788999999999987 5666667778888876543 447888899999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcc----cHHHHh--
Q 010064 272 SDKKVSPQAKQDALRALYNLSIFPS--NISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPE----GRKAIS-- 341 (519)
Q Consensus 272 ~~~~~~~~~~~~A~~aL~nLs~~~~--n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e----~r~~i~-- 341 (519)
.+...+.+..|.|+.+.-+++ .+..++..-++..++.+..|+. +++.++.+|.|+..+.. .+....
T Consensus 485 ----KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~ 560 (743)
T COG5369 485 ----KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKA 560 (743)
T ss_pred ----chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEec
Confidence 677899999999999987765 3455677888999999999886 89999999999987322 121111
Q ss_pred -hcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH-cCcHHHHHH
Q 010064 342 -RVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE-AGIASALLE 395 (519)
Q Consensus 342 -~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~-~G~i~~Ll~ 395 (519)
...-....|++.+. ..+|...+..+++|.++++.+...++.+.+ ...+..+-+
T Consensus 561 ~p~~ylfk~l~~k~e-~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~e 615 (743)
T COG5369 561 TPRRYLFKRLIDKYE-ENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFE 615 (743)
T ss_pred ChHHHHHHHHHHHHH-hcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHH
Confidence 11124456677777 567877777899999999886666666653 344443333
No 81
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.24 E-value=0.0013 Score=53.50 Aligned_cols=86 Identities=23% Similarity=0.298 Sum_probs=68.0
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 134 LKIVVKDL-QSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 134 l~~Lv~~L-~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
++.|++.| +++++.+|..|+..|..+-.. .+++.|+++++++++.++..++++|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP-----------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 56788988 788999999999998844311 25899999999999999999999999873
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANF 243 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL 243 (519)
...+++.|.+++.++. +..++..|+.+|
T Consensus 60 -~~~~~~~L~~~l~~~~--~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDD--DEVVREAAAEAL 87 (88)
T ss_dssp -HHHTHHHHHHHHTC-S--SHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCC--cHHHHHHHHhhc
Confidence 2238899999998862 456678777765
No 82
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.23 E-value=0.041 Score=56.55 Aligned_cols=214 Identities=24% Similarity=0.231 Sum_probs=145.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
.+..+++.+.+.+...+..|+..+..+... -+++.|..+|.+.+..++..++.+|+++-..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-------- 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGDP-------- 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------
Confidence 477888888888888999888885444422 2689999999999999999999988887653
Q ss_pred HhcCcHHHHHHhhcC-CCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCC--------CCCHHHHHH
Q 010064 213 VKAGAVHKMLKLIES-PVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDK--------KVSPQAKQD 283 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s-~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~--------~~~~~~~~~ 283 (519)
-.++.|+.++.. + +..++..++.+|..+-.. .++..|+..+..... ......+..
T Consensus 105 ---~a~~~li~~l~~d~---~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 ---EAVPPLVELLENDE---NEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred ---hHHHHHHHHHHcCC---cHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 367999999985 5 789999998888877532 237777777766200 000123444
Q ss_pred HHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHH
Q 010064 284 ALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPG 361 (519)
Q Consensus 284 A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~ 361 (519)
++.+|..+- +...++.|...+.+.. ++..|..+|..+.... ......+...+. ..+..
T Consensus 169 a~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~-~~~~~ 228 (335)
T COG1413 169 AAEALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALS-DESLE 228 (335)
T ss_pred HHHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhc-CCCHH
Confidence 444444332 2346677788886554 8889998888877643 134567777777 67788
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064 362 CQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL 412 (519)
Q Consensus 362 ~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L 412 (519)
++..++..|..+-... .++.+...+...+...+..+..++
T Consensus 229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~ 268 (335)
T COG1413 229 VRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAAL 268 (335)
T ss_pred HHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHh
Confidence 8888887777665432 345555555555555554444444
No 83
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.18 E-value=0.0022 Score=54.10 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhc
Q 010064 149 RREAASKVRSLAKENSETRVTLAMLGAIPPLAGML--DFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215 (519)
Q Consensus 149 ~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL--~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a 215 (519)
|...++.|.+|+..+..+...+.+.|+||.++... +..+|-+++-|.+++.||+.+|++|+..|.+-
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 56778999999999999999999999999999876 45789999999999999999999999888753
No 84
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.021 Score=61.73 Aligned_cols=274 Identities=18% Similarity=0.113 Sum_probs=169.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHH-HHHHHHHhcCCChhhHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQIS-SLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~-a~~aL~NLa~~~~~nk~~i 212 (519)
.+.+.+.+.......+..|+..+..+.++. .-..+.+.+.+..|...+.......... ++.+.-.... +--..
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~----~Lg~~ 209 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG----NLGPP 209 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH----hcCCC
Confidence 667777778778888899999999888664 4555667888999988887744433332 2222211111 11134
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc-cCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS-ALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS-~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
++.+++|.|..++.+-++....+++++..+...+- ..+.. +-.-.+|.++.-+.. ..-+.+..++..|..+
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~----aVK~llpsll~~l~~----~kWrtK~aslellg~m 281 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY----AVKLLLPSLLGSLLE----AKWRTKMASLELLGAM 281 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc----hhhHhhhhhHHHHHH----HhhhhHHHHHHHHHHH
Confidence 45667777766665432225677776655444322 11111 112245555555544 3567788899999988
Q ss_pred cCCCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHH--HHh--------h-----------------
Q 010064 292 SIFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEGRK--AIS--------R----------------- 342 (519)
Q Consensus 292 s~~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~--~i~--------~----------------- 342 (519)
+...+-.-...-..+||.|...|.| +++++.+..+|.++++.-++.. .++ +
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF 361 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTF 361 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceee
Confidence 8777666666777899999999965 4588888888888877322222 110 0
Q ss_pred ----cCCcchhhhhhccC---CCCHHHHHHHHHHHHHHhcCChhhHHHHH--HcCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 010064 343 ----VPDAFPILVDVLNW---TDSPGCQEKASYVLMVMAHKSYGDRQAMI--EAGIASALLELTLLGSTLAQKRASRILE 413 (519)
Q Consensus 343 ----~~g~i~~Lv~lL~~---s~~~~~qe~A~~~L~nL~~~~~~~~~~i~--~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~ 413 (519)
++-.+..++.+|+. ..+..+.+.++.++.|||.--++ .+.+. =.-.+|.|-..+.+..|.+|.-+.++|.
T Consensus 362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD-p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED-PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC-HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 01123333444431 12345567889999999975322 22221 2346788888888889999999999997
Q ss_pred HhhhcCCCc
Q 010064 414 CLRVDKGKQ 422 (519)
Q Consensus 414 ~l~~~~~~~ 422 (519)
-+.++.+.+
T Consensus 441 ~l~e~~g~~ 449 (569)
T KOG1242|consen 441 ALLERLGEV 449 (569)
T ss_pred HHHHHHHhh
Confidence 666554433
No 85
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.15 E-value=0.055 Score=57.97 Aligned_cols=93 Identities=17% Similarity=0.107 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCC
Q 010064 149 RREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESP 228 (519)
Q Consensus 149 ~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~ 228 (519)
...-++.+..|.+.+++.+.++ .|.|-..|++.-+.++..++++++.++..+ .-..++++ .|..|-.+|+++
T Consensus 244 ~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~-~vs~L~~fL~s~ 315 (898)
T COG5240 244 GVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQ-TVSSLRTFLKST 315 (898)
T ss_pred heehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHH-HHHHHHHHHhcc
Confidence 3445566666777777776655 355666777777889999999999988653 12223332 678888889998
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCC
Q 010064 229 VAPNPSVSEAIVANFLGLSALDSN 252 (519)
Q Consensus 229 ~~~~~~~~~~a~~aL~~LS~~~~~ 252 (519)
....+-.|..+|-.|+...+-
T Consensus 316 ---rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 316 ---RVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred ---hHHHHHHHHHHHHHHHhhCCc
Confidence 788999999999999866443
No 86
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.12 E-value=0.0053 Score=59.51 Aligned_cols=179 Identities=20% Similarity=0.159 Sum_probs=109.4
Q ss_pred cCCCHHHHHHHHHHHHHHhccC--hhhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCc
Q 010064 142 QSESEEQRREAASKVRSLAKEN--SETRVTLAM--LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGA 217 (519)
Q Consensus 142 ~s~~~~~~~~Aa~~L~~La~~~--~~~r~~l~~--~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~ 217 (519)
.+.+++.|.+|+..|+.+...+ ......+.. ..++..++..+.+....+...|+.++..|+......-... -...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 5678999999999999988776 233333322 2566777777777777788999999999997533332223 2347
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-
Q 010064 218 VHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS- 296 (519)
Q Consensus 218 v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~- 296 (519)
+|.|++.+.++ +..+++.|..+|..+...-.....+ .++.+...+.+ .++.++..++..|..+...-.
T Consensus 96 l~~Ll~~~~~~---~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~----Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 96 LPPLLKKLGDS---KKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKS----KNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHGGG------HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-----S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHccc---cHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHccc
Confidence 89999999988 7888999988898887653311111 14555555555 799999999999998875433
Q ss_pred cHHHHHh----cCcHHHHHHHcCC--HHHHHHHHHHHHHhcC
Q 010064 297 NISFILE----TDLIRYLLEMLGD--MELSERILSILSNLVS 332 (519)
Q Consensus 297 n~~~l~~----~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~ 332 (519)
....+-. ...++.+...+.| +++++.|-.++..+..
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1111111 3456667777765 4588888888888865
No 87
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.021 Score=64.80 Aligned_cols=201 Identities=19% Similarity=0.181 Sum_probs=142.3
Q ss_pred HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHH-HhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFL-GLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL 288 (519)
Q Consensus 210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~-~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL 288 (519)
..-+..|+.|..+++|+++ -.+++...+-+-. -|+.++.++..++..++-...++.|... +.-+++-+.-|+-.|
T Consensus 506 ~LaLsVGIFPYVLKLLQS~---a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~-~~~~~EqrtmaAFVL 581 (1387)
T KOG1517|consen 506 DLALSVGIFPYVLKLLQSS---ARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS-QAIPPEQRTMAAFVL 581 (1387)
T ss_pred hhhhccchHHHHHHHhccc---hHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc-CCCCHHHHHHHHHHH
Confidence 3455679999999999998 5676664443322 3677777777777654444444444431 124567788899999
Q ss_pred HHhcCCCc-cHHHHHhcCcHHHHHHHcCCH--H-HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHH
Q 010064 289 YNLSIFPS-NISFILETDLIRYLLEMLGDM--E-LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQ 363 (519)
Q Consensus 289 ~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~--~-v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~q 363 (519)
.-+..+=. .+...++.+.+...+..|.++ . ++.=++-+|+.|=. +++.|..=.+ .++...|..+|. ..-|+++
T Consensus 582 Aviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~Ls-D~vpEVR 659 (1387)
T KOG1517|consen 582 AVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLS-DPVPEVR 659 (1387)
T ss_pred HHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhc-CccHHHH
Confidence 99987643 666677888999888899774 3 56667778888877 5666655555 688899999998 5789999
Q ss_pred HHHHHHHHHHhcCC----hhh---HHH--------HHHcCcHH----HHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 364 EKASYVLMVMAHKS----YGD---RQA--------MIEAGIAS----ALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 364 e~A~~~L~nL~~~~----~~~---~~~--------i~~~G~i~----~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
.+|+++|..+.... ++. ++. +.-+..++ .|+.++.++++.+++....+|..+.
T Consensus 660 aAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 660 AAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 99999999988742 221 111 11233333 6788888999999999999998876
No 88
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.01 E-value=0.04 Score=56.62 Aligned_cols=187 Identities=26% Similarity=0.281 Sum_probs=139.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh
Q 010064 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK 253 (519)
Q Consensus 174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k 253 (519)
..++.+++++.+.+..++..+++.|..+... -+++.|..++.+. +..++..++.+|..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~---~~~vr~~a~~aLg~~------- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDE---DPRVRDAAADALGEL------- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCC---CHHHHHHHHHHHHcc-------
Confidence 4788999999999999999999997765542 3789999999998 888888887754443
Q ss_pred hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--------------H
Q 010064 254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--------------L 319 (519)
Q Consensus 254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--------------v 319 (519)
....+++.|+.++... .+..++..|+++|..+-.. .++.+|+..+.+.. +
T Consensus 102 ---~~~~a~~~li~~l~~d---~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~ 165 (335)
T COG1413 102 ---GDPEAVPPLVELLEND---ENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDV 165 (335)
T ss_pred ---CChhHHHHHHHHHHcC---CcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHH
Confidence 2345789999999853 7899999999999987533 33677777776544 2
Q ss_pred HHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhc
Q 010064 320 SERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLL 399 (519)
Q Consensus 320 ~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~ 399 (519)
+..+...|..+ .+ ...++.+.+.+. .....++..|+..|..+...+ ..+.+.+...+.+
T Consensus 166 r~~a~~~l~~~----------~~-~~~~~~l~~~l~-~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~ 224 (335)
T COG1413 166 RAAAAEALGEL----------GD-PEAIPLLIELLE-DEDADVRRAAASALGQLGSEN---------VEAADLLVKALSD 224 (335)
T ss_pred HHHHHHHHHHc----------CC-hhhhHHHHHHHh-CchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcC
Confidence 22233333221 22 567788888888 566789999999999888764 3356788888889
Q ss_pred CCHHHHHHHHHHHHHhhhc
Q 010064 400 GSTLAQKRASRILECLRVD 418 (519)
Q Consensus 400 gs~~~~~~A~~~L~~l~~~ 418 (519)
.+..++.++..+|..+...
T Consensus 225 ~~~~vr~~~~~~l~~~~~~ 243 (335)
T COG1413 225 ESLEVRKAALLALGEIGDE 243 (335)
T ss_pred CCHHHHHHHHHHhcccCcc
Confidence 9999999888888776543
No 89
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.97 E-value=0.04 Score=59.03 Aligned_cols=251 Identities=16% Similarity=0.122 Sum_probs=152.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh-------hHHHH
Q 010064 140 DLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL-------NKAAI 212 (519)
Q Consensus 140 ~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~-------nk~~i 212 (519)
.|++.-..++.++++.+..++..+ -.-+.+ ..+|..|-.+|.+.....|..|.++|-.|+...+. +-+.+
T Consensus 272 wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~--~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsL 348 (898)
T COG5240 272 WLSDKFEMVFLEAARAVCALSEEN-VGSQFV--DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESL 348 (898)
T ss_pred HhcCcchhhhHHHHHHHHHHHHhc-cCHHHH--HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHH
Confidence 344445678899999999988665 112222 12567777888899999999999999999954221 11111
Q ss_pred H-hcC---cHHHHHHhhcCCCCCCHHHHH-------------------HHHHHHHHhccCCCChhhhhhCCChHHHHHHh
Q 010064 213 V-KAG---AVHKMLKLIESPVAPNPSVSE-------------------AIVANFLGLSALDSNKPIIGSSGAVPFLVKTL 269 (519)
Q Consensus 213 v-~aG---~v~~Lv~lL~s~~~~~~~~~~-------------------~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL 269 (519)
+ +.+ ..-++-.+|+.+ ..+... .++-++.+|+..=+.+. ...+.+|...|
T Consensus 349 Isd~Nr~IstyAITtLLKTG---t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~----~s~l~FL~~~L 421 (898)
T COG5240 349 ISDENRTISTYAITTLLKTG---TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK----LSYLDFLGSSL 421 (898)
T ss_pred hhcccccchHHHHHHHHHcC---chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH----HHHHHHHHHHH
Confidence 1 111 112223344444 222221 22333333333222111 22467777777
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcc
Q 010064 270 KNSDKKVSPQAKQDALRALYNLSIFP-SNISFILETDLIRYLLEMLGDMELSERILSILSNLVS-TPEGRKAISRVPDAF 347 (519)
Q Consensus 270 ~~~~~~~~~~~~~~A~~aL~nLs~~~-~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i 347 (519)
.+. +..+.+..++.++..+..+. +.+.. ++..|+..+.|++.-+-++.+|.-|-. .|.... - ...+
T Consensus 422 ~~e---Gg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~---P-~~yv 489 (898)
T COG5240 422 LQE---GGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEYHQITVRILGILGREGPRAKT---P-GKYV 489 (898)
T ss_pred Hhc---ccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC---c-chHH
Confidence 664 78888888888888776654 33333 567788888888877777777777765 232211 0 1222
Q ss_pred hhhhh-hccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 348 PILVD-VLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 348 ~~Lv~-lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
..+.. ++- .+..++..|+.+|.-.+..-.+ .+...-+...|.+.+.+.+..++.+|..+|.+++.
T Consensus 490 rhIyNR~iL--EN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 490 RHIYNRLIL--ENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 33332 222 3577888999999776654221 22233455677888889999999999999999994
No 90
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.96 E-value=0.056 Score=60.90 Aligned_cols=275 Identities=13% Similarity=0.089 Sum_probs=155.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh
Q 010064 136 IVVKDLQSESEEQRREAASKVRS-LAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK 214 (519)
Q Consensus 136 ~Lv~~L~s~~~~~~~~Aa~~L~~-La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~ 214 (519)
.|++.+.+.+.+.|.-|..-|.. |-++. ..-+.=-+..++..|+++|+..+.++|..|.++|+-|+..-.+.+. +
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l---e 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL---E 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH---H
Confidence 77888888888888777755544 33321 1000001234688999999999999999999999999854222221 2
Q ss_pred cCcHHHHHHhhcCCCCCCHHHHHHH-HHHHHHhccCCCChhhhhhCCC----hHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064 215 AGAVHKMLKLIESPVAPNPSVSEAI-VANFLGLSALDSNKPIIGSSGA----VPFLVKTLKNSDKKVSPQAKQDALRALY 289 (519)
Q Consensus 215 aG~v~~Lv~lL~s~~~~~~~~~~~a-~~aL~~LS~~~~~k~~I~~~ga----i~~LV~lL~~~~~~~~~~~~~~A~~aL~ 289 (519)
. .+..|..-+-++ ....+... ++...-.+..++.-.......+ .|.|++.+... +....++..++..|.
T Consensus 85 ~-~ve~L~~~~~s~---keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~q--e~~sai~~e~lDil~ 158 (1233)
T KOG1824|consen 85 T-IVENLCSNMLSG---KEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQ--EDVSAIKCEVLDILA 158 (1233)
T ss_pred H-HHHHHhhhhccc---hhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhc--ccchhhHHHHHHHHH
Confidence 1 455555543343 23333322 2222222222221111122222 44444444331 234447777777765
Q ss_pred HhcCC-CccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHH
Q 010064 290 NLSIF-PSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKA 366 (519)
Q Consensus 290 nLs~~-~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A 366 (519)
-+-.. .+-... ...+.+..++.-|..+. ++.+|+.+|++|+..- ++..... .+..|+.=|..+..+....--
T Consensus 159 d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~~---li~~Ll~~L~~~~q~~~~rt~ 233 (1233)
T KOG1824|consen 159 DVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYVE---LIEHLLKGLSNRTQMSATRTY 233 (1233)
T ss_pred HHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHHH---HHHHHHhccCCCCchHHHHHH
Confidence 54322 111111 23344455555555554 8999999999999832 2222222 444566655534444444455
Q ss_pred HHHHHHHhcCChhhHHHHHHcCcHHHHHHHh---hcCCHHHHHHHHHHHHHhhhcCCCccccc
Q 010064 367 SYVLMVMAHKSYGDRQAMIEAGIASALLELT---LLGSTLAQKRASRILECLRVDKGKQVSGT 426 (519)
Q Consensus 367 ~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll---~~gs~~~~~~A~~~L~~l~~~~~~~~~~~ 426 (519)
..+|..+|.. .++|---.-..++|.+.+.. ...+.+.++....+|..|-..-+..+.++
T Consensus 234 Iq~l~~i~r~-ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~ 295 (1233)
T KOG1824|consen 234 IQCLAAICRQ-AGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPH 295 (1233)
T ss_pred HHHHHHHHHH-hcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhccc
Confidence 6667777764 23333333456789999998 67788999999999998886555555554
No 91
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.88 E-value=0.0025 Score=43.73 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=36.0
Q ss_pred hhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 206 DLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS 247 (519)
Q Consensus 206 ~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS 247 (519)
++++..+++.|+++.|+.+++++ +..++..++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~---~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE---DEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHc
Confidence 45899999999999999999987 8999999999999986
No 92
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.85 E-value=0.074 Score=58.54 Aligned_cols=261 Identities=19% Similarity=0.164 Sum_probs=161.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhH---HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETR---VTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK 209 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r---~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk 209 (519)
.+..++..|++....++..|+..+..|+.-- ..+ ..+...|+| |.+.|..+++++.-..+.||..+... -...
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vl-ktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nv-igm~ 875 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVL-KTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNV-IGMT 875 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHH-HhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHh-cccc
Confidence 3556677788899999999999999888542 222 234445554 67999999999876666666655532 1111
Q ss_pred HHHH-hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC----hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064 210 AAIV-KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN----KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDA 284 (519)
Q Consensus 210 ~~iv-~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~----k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A 284 (519)
+..- -.|++|.|.-+|++. +..++++++..+-.++...+- |+-+ -.---|+.+|.+ .+..+++.|
T Consensus 876 km~pPi~dllPrltPILknr---heKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLka----hkK~iRRaa 945 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNR---HEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKA----HKKEIRRAA 945 (1172)
T ss_pred ccCCChhhhcccchHhhhhh---HHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHH----HHHHHHHHH
Confidence 1111 237899999999998 899999998887777755332 2211 122346677776 578888888
Q ss_pred HHHHHHhcC--CCccHHH----------------------HH-hc-CcHHHHHHHcC---CHH--HHHHHHHHHHHhcC-
Q 010064 285 LRALYNLSI--FPSNISF----------------------IL-ET-DLIRYLLEMLG---DME--LSERILSILSNLVS- 332 (519)
Q Consensus 285 ~~aL~nLs~--~~~n~~~----------------------l~-~~-g~v~~Lv~lL~---~~~--v~~~Al~~L~nLs~- 332 (519)
..++..++. ++..... ++ +. |.+..|=.++. .++ ++.-.+.+|+.+-.
T Consensus 946 ~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Fey 1025 (1172)
T KOG0213|consen 946 VNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEY 1025 (1172)
T ss_pred HhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHH
Confidence 888888764 2221111 11 11 22222223332 233 77778888888776
Q ss_pred -CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh-------cCCHHH
Q 010064 333 -TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTL-------LGSTLA 404 (519)
Q Consensus 333 -~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~-------~gs~~~ 404 (519)
....++-|-. ..|.|.+.|. ..++.-+..|+.++..|+.+.++ .|....++.|+. ..+|.+
T Consensus 1026 igemskdYiya---v~PlleDAlm-DrD~vhRqta~~~I~Hl~Lg~~g-------~g~eda~iHLLN~iWpNIle~sPhv 1094 (1172)
T KOG0213|consen 1026 IGEMSKDYIYA---VTPLLEDALM-DRDLVHRQTAMNVIKHLALGVPG-------TGCEDALIHLLNLIWPNILETSPHV 1094 (1172)
T ss_pred HHHHhhhHHHH---hhHHHHHhhc-cccHHHHHHHHHHHHHHhcCCCC-------cCcHHHHHHHHHHhhhhhcCCChHH
Confidence 3444444444 5666777676 45666777788888877776443 344444444443 467777
Q ss_pred HHHHHHHHHHhhhc
Q 010064 405 QKRASRILECLRVD 418 (519)
Q Consensus 405 ~~~A~~~L~~l~~~ 418 (519)
+......+.-|+..
T Consensus 1095 iqa~~e~~eg~r~~ 1108 (1172)
T KOG0213|consen 1095 IQAFDEAMEGLRVA 1108 (1172)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766666643
No 93
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.80 E-value=0.023 Score=51.82 Aligned_cols=131 Identities=16% Similarity=0.158 Sum_probs=99.7
Q ss_pred hhhhhCCChHHHHHHhhcCCC--CCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC----CHHHHHHHHHHH
Q 010064 254 PIIGSSGAVPFLVKTLKNSDK--KVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG----DMELSERILSIL 327 (519)
Q Consensus 254 ~~I~~~gai~~LV~lL~~~~~--~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~----~~~v~~~Al~~L 327 (519)
..+++.+++..|++++.++.. .........++.++..|..+.-.-+..++...|...+..+. |..+...|+.+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 346678899999999998510 01257788899999999988766667788888888888874 455899999999
Q ss_pred HHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh-hHHHHH
Q 010064 328 SNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG-DRQAMI 385 (519)
Q Consensus 328 ~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~-~~~~i~ 385 (519)
.+++.+....-..+..+=-++.|+..|+ ..++.+|..|...+..|..+.++ .|+.+.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq-~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQ-VSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9999965554444443667899999999 47899999999999999877444 344443
No 94
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.082 Score=56.61 Aligned_cols=268 Identities=14% Similarity=0.108 Sum_probs=164.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
++.|-..++.-++..|..-+.-|..|-.. .-...+.= ...++.|+.||..++.+++..+-.+|.++-.. -+++-..
T Consensus 169 ipLL~eriy~~n~~tR~flv~Wl~~Lds~--P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s 245 (675)
T KOG0212|consen 169 IPLLRERIYVINPMTRQFLVSWLYVLDSV--PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSS 245 (675)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcC--CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccc
Confidence 44444444555677777766666665422 22222211 34678889999999999998887777776542 2232233
Q ss_pred Hhc-CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH---HH
Q 010064 213 VKA-GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR---AL 288 (519)
Q Consensus 213 v~a-G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~---aL 288 (519)
++. ..++.++..++++ ++.++..|+--+.............--+|.+..++..+.+. ....++..+.. .|
T Consensus 246 ~d~~~~i~vlv~~l~ss---~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~---e~~~i~~~a~~~n~~l 319 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSS---EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT---EEMSIKEYAQMVNGLL 319 (675)
T ss_pred cCcccchhhccccccCC---cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC---ccccHHHHHHHHHHHH
Confidence 232 4789999999998 88888777544444444333322223366666666666652 12122322222 22
Q ss_pred HHhcCCCccHHHHHhc-CcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHH
Q 010064 289 YNLSIFPSNISFILET-DLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK 365 (519)
Q Consensus 289 ~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~ 365 (519)
.-+.....-... ++- ..+..|...+.+. +.+-.++..+..|-....+.-.... ...++.|+.-|. ..+..+...
T Consensus 320 ~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~-~~if~tLL~tLs-d~sd~vvl~ 396 (675)
T KOG0212|consen 320 LKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN-DSIFLTLLKTLS-DRSDEVVLL 396 (675)
T ss_pred HHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc-cHHHHHHHHhhc-CchhHHHHH
Confidence 333322221111 222 3455666666543 4777888888888764444444444 578889999998 567889999
Q ss_pred HHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 366 ASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 366 A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
+..++.++|.++... .. -..+..|++++...+.-...|+.-+++.|+.
T Consensus 397 ~L~lla~i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 397 ALSLLASICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHHHHhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 999999999874431 00 1245567777788888899999999999884
No 95
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.035 Score=59.35 Aligned_cols=194 Identities=17% Similarity=0.146 Sum_probs=132.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcc---ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKE---NSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK 209 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~---~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk 209 (519)
.+.-|..+|+.++.+++..+=.+|.++..+ ++.. +--...++.++.-+.++.+.+|..|+.-+.....- ....
T Consensus 209 ~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i-~g~~ 284 (675)
T KOG0212|consen 209 LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI-PGRD 284 (675)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcC-CCcc
Confidence 356677788888888876555544443322 2221 11245789999999999999999998888887763 4444
Q ss_pred HHHHhcCcHHHHHHhhcCCCCCCHHHHHHH---HHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064 210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAI---VANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR 286 (519)
Q Consensus 210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a---~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~ 286 (519)
-...-.|++..++.++.+.. ...+.+.+ -..|..+...+..+..|--...+..|.+.+.. +..+++..++.
T Consensus 285 ~l~~~s~il~~iLpc~s~~e--~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~----~~~~tri~~L~ 358 (675)
T KOG0212|consen 285 LLLYLSGILTAILPCLSDTE--EMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD----DREETRIAVLN 358 (675)
T ss_pred hhhhhhhhhhhcccCCCCCc--cccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc----chHHHHHHHHH
Confidence 44445688888888888762 12344433 23345555544444433223456777777777 78899999998
Q ss_pred HHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCccc
Q 010064 287 ALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEG 336 (519)
Q Consensus 287 aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~ 336 (519)
-+..|-....+.-..-.....+.|+.-|.|. ++...++..|.+++.+++.
T Consensus 359 Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 359 WIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 8888877766666666678889999999654 4999999999999986554
No 96
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.64 E-value=0.011 Score=57.35 Aligned_cols=176 Identities=16% Similarity=0.145 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHhccCC---CChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCc
Q 010064 232 NPSVSEAIVANFLGLSALD---SNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDL 306 (519)
Q Consensus 232 ~~~~~~~a~~aL~~LS~~~---~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~ 306 (519)
+-+.+..++-.|..+.... .....+.+ ...+..++..+.+ ....+...|+.+|..|+..-.....-.-...
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d----~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD----LRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H----H---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 5666777766666654332 33333332 2555666776666 4777899999999999865443222224567
Q ss_pred HHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCc-chhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010064 307 IRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDA-FPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQA 383 (519)
Q Consensus 307 v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~-i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~ 383 (519)
+|.|+..+++.. +.+.|..+|..+...-..-. .. +..+...+. +.++.++..++..+..+....+.....
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~-~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSP------KILLEILSQGLK-SKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 889999987764 88899999998887433111 12 335555666 689999999998888887653311111
Q ss_pred H----HHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 384 M----IEAGIASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 384 i----~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
+ .-..+++.+...+.++++.+|+.|..++..+...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 1245788999999999999999999999999754
No 97
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.57 Score=52.35 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=26.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 010064 137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLG 202 (519)
Q Consensus 137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa 202 (519)
+.+.|++.|.-++..|+.+|.+++... -.|+ +.|-+.++|++.++-++..|+.++..+-
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~E-mard------lapeVe~Ll~~~~~~irKKA~Lca~r~i 170 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSPE-MARD------LAPEVERLLQHRDPYIRKKAALCAVRFI 170 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCHH-HhHH------hhHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 333444555555555555555554221 2222 2334444455555555555544444443
No 98
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.11 Score=56.18 Aligned_cols=221 Identities=17% Similarity=0.173 Sum_probs=142.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
.+..++..+.......|.....+|..+..... ... ..-+.+-+.+++...+...+..+++.+.-+..+ ..-..+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~-~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSK-GLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNG--LGIESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhh-ccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcC--cHHhhh
Confidence 36666777777778888888888776553321 111 122466778888888888899999999988874 334566
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHH-HH----HHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEA-IV----ANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRA 287 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~-a~----~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~a 287 (519)
.+.+.+..|.+.+++. ....... +. ....+|. ...+...++.+..+|.+. ......++..|..+
T Consensus 171 ~~~~~l~~l~~ai~dk---~~~~~re~~~~a~~~~~~~Lg-------~~~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a 239 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDK---KSALNREAALLAFEAAQGNLG-------PPFEPYIVPILPSILTNF-GDKINKVREAAVEA 239 (569)
T ss_pred hhhhHHHHHHHHhccc---chhhcHHHHHHHHHHHHHhcC-------CCCCchHHhhHHHHHHHh-hccchhhhHHHHHH
Confidence 6778999999999887 3333332 21 1222333 113456677777777653 12456677777766
Q ss_pred HHHhcCCC-ccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHH
Q 010064 288 LYNLSIFP-SNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQE 364 (519)
Q Consensus 288 L~nLs~~~-~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe 364 (519)
..-+...- ....+ -.+++++.-+.+.. ....++..|+.|+......-...- +..+|.|.+.|. ...+++++
T Consensus 240 ~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~-DT~~evr~ 313 (569)
T KOG1242|consen 240 AKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLW-DTKPEVRK 313 (569)
T ss_pred HHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHc-cCCHHHHH
Confidence 65553221 11111 12344444343344 455788899988875555555555 679999999998 56899999
Q ss_pred HHHHHHHHHhcC
Q 010064 365 KASYVLMVMAHK 376 (519)
Q Consensus 365 ~A~~~L~nL~~~ 376 (519)
.+..++..++.-
T Consensus 314 a~~~~l~~~~sv 325 (569)
T KOG1242|consen 314 AGIETLLKFGSV 325 (569)
T ss_pred HHHHHHHHHHHh
Confidence 999999888763
No 99
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.47 E-value=0.039 Score=55.21 Aligned_cols=230 Identities=13% Similarity=0.056 Sum_probs=149.1
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh-
Q 010064 181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS- 258 (519)
Q Consensus 181 ~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~- 258 (519)
.++++=++-.+..|..+|.|+... .+.|..+-. ...-..+++.+++.-. ...++-..+-++|.|+.++.....|-.
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg-~~qlQY~SL~~iw~lTf~~~~aqdi~K~ 233 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVG-VKQLQYNSLIIIWILTFSKECAQDIDKM 233 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344444555788899999999995 666555544 4455677888877522 356677788888999988776544433
Q ss_pred CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC--ccHHHHHhcCcHHHHHHHc-----CCHHHHH---HHHHHHH
Q 010064 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP--SNISFILETDLIRYLLEML-----GDMELSE---RILSILS 328 (519)
Q Consensus 259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~--~n~~~l~~~g~v~~Lv~lL-----~~~~v~~---~Al~~L~ 328 (519)
...+..|+++.+.. ...++.+-++.++.|++... ..+..++--|-+.+-+++| .|.+++. ..-..|.
T Consensus 234 ~dli~dli~iVk~~---~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 234 DDLINDLIAIVKER---AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 46788889998875 66788889999999998733 3454444445444455555 2333221 1111111
Q ss_pred ----HhcCCcccHHHHh-------------------------hcCCcchhhhhhccCCCCHH-HHHHHHHHHHHHhcCCh
Q 010064 329 ----NLVSTPEGRKAIS-------------------------RVPDAFPILVDVLNWTDSPG-CQEKASYVLMVMAHKSY 378 (519)
Q Consensus 329 ----nLs~~~e~r~~i~-------------------------~~~g~i~~Lv~lL~~s~~~~-~qe~A~~~L~nL~~~~~ 378 (519)
.|+..++...++- +.-..+..|.++|+ ..++. ....||.-+..+....|
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq-~n~~nt~i~vAc~Di~~~Vr~~P 389 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ-SNNPNTWICVACSDIFQLVRASP 389 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh-cCCCCceEeeeHhhHHHHHHhCc
Confidence 1222222222111 11123455666666 33333 33446666777777778
Q ss_pred hhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 379 GDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 379 ~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
+.+..+..-|+=..+++|+.+++++++-.|..+++.+-
T Consensus 390 E~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 390 EINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 88888999999999999999999999999999998764
No 100
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.45 E-value=0.012 Score=49.63 Aligned_cols=66 Identities=12% Similarity=0.246 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhcc-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 010064 320 SERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLN-WTDSPGCQEKASYVLMVMAHKSYGDRQAMIE 386 (519)
Q Consensus 320 ~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~-~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~ 386 (519)
+...+.+|+||+. ++..+..+.. .|+++.++..-. ...+|.+++.|.+++.|||.+++++++.+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4567889999998 7788888888 688999888653 2468999999999999999999998887764
No 101
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.13 Score=58.64 Aligned_cols=201 Identities=13% Similarity=0.098 Sum_probs=140.7
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHH-hcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC
Q 010064 172 MLGAIPPLAGMLDFQLADSQISSLYALLN-LGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD 250 (519)
Q Consensus 172 ~~G~i~~Lv~lL~s~~~~~~~~a~~aL~N-La~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~ 250 (519)
.-|+.|.++++|++.-.+++..-+-+=.. |++ ++.++..+++.++-..++++|..+..-+++-+..++-+|..+..+-
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv-D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAV-DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhc-CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 46899999999999888877554444333 455 5888999999988888888887732213455556666666665542
Q ss_pred -CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHH
Q 010064 251 -SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFILETDLIRYLLEMLGD--MELSERILSI 326 (519)
Q Consensus 251 -~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~ 326 (519)
-.+....+.+.|...+..|.+. ..+-.++.++-+|..|=.+ +.++..=...++...|..+|.| ++++..|+-+
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~---~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFA 665 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDD---PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFA 665 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCC---ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHH
Confidence 2355555777888888888762 2577899999999999654 4577777788999999999976 4699999999
Q ss_pred HHHhcCC-----cccHHHH---hh-------cCCcch----hhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064 327 LSNLVST-----PEGRKAI---SR-------VPDAFP----ILVDVLNWTDSPGCQEKASYVLMVMAHKS 377 (519)
Q Consensus 327 L~nLs~~-----~e~r~~i---~~-------~~g~i~----~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~ 377 (519)
|+.+..+ ++....+ ++ .+..+. .++.+++ .+++-++.+.+.+|..+..+.
T Consensus 666 Lgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vs-dgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 666 LGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVS-DGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHh-ccchHHHHHHHHHHHHHHHhh
Confidence 9988772 3322222 00 122233 5666677 567888888777787777653
No 102
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.36 E-value=0.0076 Score=44.61 Aligned_cols=55 Identities=20% Similarity=0.131 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064 360 PGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415 (519)
Q Consensus 360 ~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l 415 (519)
|.++..|+++|.+++....+..+. ....++|.|+.++.+.++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 568999999999988775554333 5667899999999999999999999999864
No 103
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.093 Score=57.18 Aligned_cols=213 Identities=16% Similarity=0.162 Sum_probs=128.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccC------hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKEN------SETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL 207 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~------~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~ 207 (519)
+...++.++.++.+++..|+..+.-....- ......+ ...++..+..++...+..++..|+.+|+.+-.-++
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe- 313 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKL-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE- 313 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhh-HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-
Confidence 788888898888889888865544333211 1111112 23467788888888889999999999998765433
Q ss_pred hHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh----------c----cCCCChhhhhhCCChHHHHHHhhcCC
Q 010064 208 NKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGL----------S----ALDSNKPIIGSSGAVPFLVKTLKNSD 273 (519)
Q Consensus 208 nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L----------S----~~~~~k~~I~~~gai~~LV~lL~~~~ 273 (519)
.|+..-.=..++.-++.. -...+.....+.+. . ..++.-..|+.+|+-..+|.-|..
T Consensus 314 ---e~i~QTLdKKlms~lRRk----r~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlED-- 384 (823)
T KOG2259|consen 314 ---EIIQQTLDKKLMSRLRRK----RTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLED-- 384 (823)
T ss_pred ---HHHHHHHHHHHhhhhhhh----hhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechH--
Confidence 333332333333322221 00011111111111 0 012234557789999999998887
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhh
Q 010064 274 KKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPIL 350 (519)
Q Consensus 274 ~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~L 350 (519)
.-.+++..|+..|+.|+.+.. .. ..++..|+.+++|+ +++..|+.+|..++..-..+... ++.+
T Consensus 385 --Ef~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeq------l~~i 451 (823)
T KOG2259|consen 385 --EFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQ------LRQI 451 (823)
T ss_pred --HHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHH------HHHH
Confidence 678999999999999997653 22 23677899999876 48899999999888753333322 2344
Q ss_pred hhhccCCCCHHHHHHHHHHHH
Q 010064 351 VDVLNWTDSPGCQEKASYVLM 371 (519)
Q Consensus 351 v~lL~~s~~~~~qe~A~~~L~ 371 (519)
.+.|. ..++++++..-.+|.
T Consensus 452 l~~L~-D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 452 LESLE-DRSVDVREALRELLK 471 (823)
T ss_pred HHHHH-hcCHHHHHHHHHHHH
Confidence 44444 234455544443333
No 104
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.02 E-value=2.1 Score=48.51 Aligned_cols=161 Identities=18% Similarity=0.210 Sum_probs=121.0
Q ss_pred hHHHHHHHHHc-ccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHh
Q 010064 104 SKSEKLLDLLN-LAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGM 182 (519)
Q Consensus 104 ~~~~~l~aLl~-ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~l 182 (519)
.+.+++..++. +..++.. ...++.+++...+.|.+.|...--.|...++.+++. ++. ++..+..=
T Consensus 35 ~kidAmK~iIa~M~~G~dm---------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avNti~kD 100 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDM---------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVNTIQKD 100 (757)
T ss_pred HHHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHHHHHhh
Confidence 35556654443 3444442 233677777777888888888888888888877522 222 57788888
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCCh
Q 010064 183 LDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAV 262 (519)
Q Consensus 183 L~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai 262 (519)
|+++++.+|-.|+++|.-|-.. .+.+. +++++.+++.++ ++.++..|+-++..+=.. .+..+.+.|.+
T Consensus 101 l~d~N~~iR~~AlR~ls~l~~~------el~~~-~~~~ik~~l~d~---~ayVRk~Aalav~kly~l--d~~l~~~~g~~ 168 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLRVK------ELLGN-IIDPIKKLLTDP---HAYVRKTAALAVAKLYRL--DKDLYHELGLI 168 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcChH------HHHHH-HHHHHHHHccCC---cHHHHHHHHHHHHHHHhc--CHhhhhcccHH
Confidence 8899999999999999987763 33332 689999999999 899999998888887644 34556678888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC
Q 010064 263 PFLVKTLKNSDKKVSPQAKQDALRALYNLSIF 294 (519)
Q Consensus 263 ~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~ 294 (519)
..+..++.. .++.+..+|+.+|+.+-..
T Consensus 169 ~~l~~l~~D----~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVAD----SDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhC----CCchHHHHHHHHHHHhchh
Confidence 888888887 7999999999999988644
No 105
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.00 E-value=0.28 Score=53.20 Aligned_cols=263 Identities=16% Similarity=0.104 Sum_probs=155.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh--hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENS--ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK 209 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~--~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk 209 (519)
..+..++..|++..++++..|+.....|++--. .--..+...|. .|.+-|..+++++.-..+.|++.+... ...+
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv-~~~~ 680 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSV-HRFR 680 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhh-hccc
Confidence 346778888999999999999988888774321 01223444554 466888889999887777777776642 2222
Q ss_pred HH-HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh-CCChHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010064 210 AA-IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS-SGAVPFLVKTLKNSDKKVSPQAKQDALRA 287 (519)
Q Consensus 210 ~~-iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~-~gai~~LV~lL~~~~~~~~~~~~~~A~~a 287 (519)
.. =--.|++|.|.-+|++. +..+..+.+..+-.+..+.+..-..-+ .-.---|+.+|.+ .+.+++++|..+
T Consensus 681 ~mqpPi~~ilP~ltPILrnk---h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks----~nKeiRR~A~~t 753 (975)
T COG5181 681 SMQPPISGILPSLTPILRNK---HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS----WNKEIRRNATET 753 (975)
T ss_pred ccCCchhhccccccHhhhhh---hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH----hhHHHHHhhhhh
Confidence 11 11248999999999998 788888887777666655432111001 1223356777877 789999999999
Q ss_pred HHHhcCCCccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhcCC---cchhhhhhccCCCCHHHHH
Q 010064 288 LYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPD---AFPILVDVLNWTDSPGCQE 364 (519)
Q Consensus 288 L~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g---~i~~Lv~lL~~s~~~~~qe 364 (519)
+..++.- .|--..|..+|+.-++++.-.++-..++. ..+....| ++|.|+.--. +.+..+|.
T Consensus 754 fG~Is~a---------iGPqdvL~~LlnnLkvqeRq~RvctsvaI-----~iVae~cgpfsVlP~lm~dY~-TPe~nVQn 818 (975)
T COG5181 754 FGCISRA---------IGPQDVLDILLNNLKVQERQQRVCTSVAI-----SIVAEYCGPFSVLPTLMSDYE-TPEANVQN 818 (975)
T ss_pred hhhHHhh---------cCHHHHHHHHHhcchHHHHHhhhhhhhhh-----hhhHhhcCchhhHHHHHhccc-CchhHHHH
Confidence 9988632 12222333344333333322221111111 01111123 3444444334 44556776
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh-hcCCC
Q 010064 365 KASYVLMVMAHKS-YGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR-VDKGK 421 (519)
Q Consensus 365 ~A~~~L~nL~~~~-~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~-~~~~~ 421 (519)
-...+++-+-..- ...++.+. -+.|.|-+-+.+.++.-+.-|...+..|. ..+++
T Consensus 819 GvLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 819 GVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc
Confidence 6666665554320 11222222 24566666777888989999999999998 54444
No 106
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.97 E-value=0.03 Score=62.13 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=89.4
Q ss_pred ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHH-HhcCCCccHHHHHhcCcHHHHHHHcCCH-H--HHHHHHHHH
Q 010064 252 NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY-NLSIFPSNISFILETDLIRYLLEMLGDM-E--LSERILSIL 327 (519)
Q Consensus 252 ~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~-nLs~~~~n~~~l~~~g~v~~Lv~lL~~~-~--v~~~Al~~L 327 (519)
.+...++.|+...|+.+... .....+..+..+|. .+.... . .....++++.+.+... . -...++.+|
T Consensus 496 ~~~~~Ik~~~~~aLlrl~~~----q~e~akl~~~~aL~~~i~f~~-~----~~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLGQQ----QFEEAKLKWYHALAGKIDFPG-E----RSYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hcCccccccHHHHHHHHHHH----hchHHHHHHHHHHhhhcCCCC-C----chhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 46667789999999999988 67788998999988 222111 1 1124566676666433 2 234799999
Q ss_pred HHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 010064 328 SNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE 386 (519)
Q Consensus 328 ~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~ 386 (519)
+||++ +...|+.+.. .-+++.+.+++. .+++..|..+...++||..++.-+...+.+
T Consensus 567 tnLas~s~s~r~~i~k-e~~~~~ie~~~~-ee~~~lqraa~e~~~NLl~~~~~~e~si~e 624 (748)
T KOG4151|consen 567 TNLASISESDRQKILK-EKALGKIEELMT-EENPALQRAALESIINLLWSPLLYERSIVE 624 (748)
T ss_pred hcccCcchhhHHHHHH-HhcchhhHHHhh-cccHHHHHHHHHHHHHHHhhHHHHHHHhhc
Confidence 99999 6778888887 567777777766 578999999999999999985444444443
No 107
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.39 Score=53.62 Aligned_cols=223 Identities=16% Similarity=0.169 Sum_probs=114.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc-cCCC-----
Q 010064 178 PLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS-ALDS----- 251 (519)
Q Consensus 178 ~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS-~~~~----- 251 (519)
.|..=|++.+.-+.-.|+.+|+|++.. +-.+ ...|-..++++.. ++.++..|+-+...+- ..++
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~-Emar------dlapeVe~Ll~~~---~~~irKKA~Lca~r~irK~P~l~e~f 180 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSP-EMAR------DLAPEVERLLQHR---DPYIRKKAALCAVRFIRKVPDLVEHF 180 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCH-HHhH------HhhHHHHHHHhCC---CHHHHHHHHHHHHHHHHcCchHHHHh
Confidence 444445566777788899999999973 2222 2457777888887 8888887755554432 2222
Q ss_pred ---Chhhhhh--CC----ChHHHHHHhhcCC--CCCCHHHHHHHHHHHHHhcCCC---c-----cHHHHHhcCcHHHHHH
Q 010064 252 ---NKPIIGS--SG----AVPFLVKTLKNSD--KKVSPQAKQDALRALYNLSIFP---S-----NISFILETDLIRYLLE 312 (519)
Q Consensus 252 ---~k~~I~~--~g----ai~~LV~lL~~~~--~~~~~~~~~~A~~aL~nLs~~~---~-----n~~~l~~~g~v~~Lv~ 312 (519)
.+..+.+ .| ++.++..++.... -..-.++...-+..|.++.... + .-..+++..+++ ++.
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr-lLr 259 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR-LLR 259 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH-HHH
Confidence 1222222 23 3344444444310 0011224455566666665432 1 112233322222 234
Q ss_pred Hc--CCHHHHHHHHHHHHHhcCCcccHH----HHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-
Q 010064 313 ML--GDMELSERILSILSNLVSTPEGRK----AISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMI- 385 (519)
Q Consensus 313 lL--~~~~v~~~Al~~L~nLs~~~e~r~----~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~- 385 (519)
+| +|++..+.-..+|.-++...+.-+ +|.- .++..+..+.. ++.++..|+-+|...-.++..+.+.+.
T Consensus 260 iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILY--E~V~TI~~I~~---~~~LrvlainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 260 ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILY--ECVRTIMDIRS---NSGLRVLAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHH--HHHHHHHhccC---CchHHHHHHHHHHHHhcCCccceeeeeh
Confidence 44 244566666666666665322222 2222 14444444443 577888899888887776554444331
Q ss_pred ---------HcCcH----HHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 386 ---------EAGIA----SALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 386 ---------~~G~i----~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
+..++ ..+++.+.+.++-+|+||..++-.|.
T Consensus 335 n~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 335 NMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred hhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 01111 23445555555556666555555544
No 108
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.95 E-value=0.16 Score=56.55 Aligned_cols=234 Identities=14% Similarity=0.144 Sum_probs=155.2
Q ss_pred hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHH-HhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHH--HHHHH
Q 010064 165 ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALL-NLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVS--EAIVA 241 (519)
Q Consensus 165 ~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~-NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~--~~a~~ 241 (519)
.-+...+..|+...|+.|.....+..+..+..+|. .+....... ...++++...+.+. .... -.++-
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d----~~~~en~E~L~ 564 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHND----EKGLENFEALE 564 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhh----HHHHHHHHHHH
Confidence 45556677899999999998888888888888888 444322221 13456665555543 3322 24456
Q ss_pred HHHHhccCCC-ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHh-cCcHHHHHHHcCC--
Q 010064 242 NFLGLSALDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILE-TDLIRYLLEMLGD-- 316 (519)
Q Consensus 242 aL~~LS~~~~-~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~-~g~v~~Lv~lL~~-- 316 (519)
++.||+..++ .|..|...-+++.+-.++.. .++..+..++..+.||..++. ....+.+ ...++.....+..
T Consensus 565 altnLas~s~s~r~~i~ke~~~~~ie~~~~e----e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~ 640 (748)
T KOG4151|consen 565 ALTNLASISESDRQKILKEKALGKIEELMTE----ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVAD 640 (748)
T ss_pred HhhcccCcchhhHHHHHHHhcchhhHHHhhc----ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhh
Confidence 7788876654 47778876667766666655 689999999999999999887 5555666 3555555544432
Q ss_pred HHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHH
Q 010064 317 MELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLE 395 (519)
Q Consensus 317 ~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~ 395 (519)
..+...+++++.-+++ ...++..+.....+...++.++. +.++.+|.....+.+|+.....+....+.+...++.+..
T Consensus 641 E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~-~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 641 EKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQ-DEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred hHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhc-CchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence 3355666666665555 33444423332457778888888 678999999999999988776666677777777777766
Q ss_pred HhhcCCHHHHHHHHHHHH
Q 010064 396 LTLLGSTLAQKRASRILE 413 (519)
Q Consensus 396 Ll~~gs~~~~~~A~~~L~ 413 (519)
+-...-...+..+...|.
T Consensus 720 ~~~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 720 LQKLNRAPKREDAAPCLS 737 (748)
T ss_pred HHHhhhhhhhhhhhhHHH
Confidence 655533344444444444
No 109
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.098 Score=57.00 Aligned_cols=219 Identities=19% Similarity=0.185 Sum_probs=136.7
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC------C
Q 010064 179 LAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS------N 252 (519)
Q Consensus 179 Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~------~ 252 (519)
|..+....+..++..|+.+|..|..+..-.+. .....++++.+. +..++.+|+.+++-.+.--+ +
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~---~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDD---YEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcch---HHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 66666667777788888887777765333332 346677888887 78899988777665542211 1
Q ss_pred -hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cH--------------------------------
Q 010064 253 -KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NI-------------------------------- 298 (519)
Q Consensus 253 -k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~-------------------------------- 298 (519)
...+ -..+...+...+.. .+..++..|+.+|.-+-.-.+ .+
T Consensus 274 ~e~kl-~D~aF~~vC~~v~D----~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 274 EEEKL-KDAAFSSVCRAVRD----RSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWS 348 (823)
T ss_pred hhhhh-HHHHHHHHHHHHhc----CceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcc
Confidence 1111 12234445555554 455556666555543322111 11
Q ss_pred ------------------HHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCC
Q 010064 299 ------------------SFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTD 358 (519)
Q Consensus 299 ------------------~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~ 358 (519)
..++..|+-..++.-|.|. +++++|+..++.|+.+... +.. .++.-|+++++ .+
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---FA~--~aldfLvDMfN-DE 422 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---FAV--RALDFLVDMFN-DE 422 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC---cHH--HHHHHHHHHhc-cH
Confidence 1133344444455555544 4888999999999873221 112 36678889998 56
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCcc
Q 010064 359 SPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQV 423 (519)
Q Consensus 359 ~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~~ 423 (519)
...++..|.++|..++.+ ..+++..++.++.-+.+.++++++....+|.+.+....+.+
T Consensus 423 ~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i 481 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECI 481 (823)
T ss_pred HHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHH
Confidence 677888888888877754 33455567888889999999999999999988876554443
No 110
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.86 Score=50.34 Aligned_cols=271 Identities=14% Similarity=0.130 Sum_probs=138.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCC--HHHHHHHHHHHHHhcCCChhhHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQL--ADSQISSLYALLNLGIGNDLNKAA 211 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~--~~~~~~a~~aL~NLa~~~~~nk~~ 211 (519)
+..+.+.|.+.|+.-.+.|+.++.++-.. ++++.+.. =|+ ++|-+++ +-++..|+.+|..|-..+++-
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl--- 182 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL--- 182 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---
Confidence 44555566677777888888888887643 45555532 233 5665533 457888888888888754442
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--Chhhh-----------hhCC---------C------hH
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPII-----------GSSG---------A------VP 263 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~k~~I-----------~~~g---------a------i~ 263 (519)
+-..+....++.+|.+. +..+..++...+-.|+...+ .+..+ ...| . .-
T Consensus 183 ~~~~~W~~riv~LL~D~---~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~v 259 (938)
T KOG1077|consen 183 VNPGEWAQRIVHLLDDQ---HMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQV 259 (938)
T ss_pred cChhhHHHHHHHHhCcc---ccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHH
Confidence 22224566666666655 44444444443333332211 01100 0000 0 11
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHH---HHhcCCCccHHHHHhcCcHH----HHHHH---c-CCHHHHHHHHHHHHHhcC
Q 010064 264 FLVKTLKNSDKKVSPQAKQDALRAL---YNLSIFPSNISFILETDLIR----YLLEM---L-GDMELSERILSILSNLVS 332 (519)
Q Consensus 264 ~LV~lL~~~~~~~~~~~~~~A~~aL---~nLs~~~~n~~~l~~~g~v~----~Lv~l---L-~~~~v~~~Al~~L~nLs~ 332 (519)
.|+++|+...+..++..+.....+| .|.+..+.-...+.+.++.. ..+++ + .++++...|+..|+.+-+
T Consensus 260 Kl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls 339 (938)
T KOG1077|consen 260 KLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLS 339 (938)
T ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhh
Confidence 2334444322223444444433333 33333222111111122211 11222 2 234466666666666555
Q ss_pred CcccH-HHH--------hhc-------CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHH
Q 010064 333 TPEGR-KAI--------SRV-------PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLEL 396 (519)
Q Consensus 333 ~~e~r-~~i--------~~~-------~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~L 396 (519)
+.|.. +-+ ... ..-...++..|+-..+..++..|+..|+.||. .++.+.+ |.-|++.
T Consensus 340 ~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak~I-----V~elLqY 412 (938)
T KOG1077|consen 340 HRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQI-----VAELLQY 412 (938)
T ss_pred cccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHHHH-----HHHHHHH
Confidence 32211 100 000 01144555556644566778888888888884 3555444 4567888
Q ss_pred hhcCCHHHHHHHHHHHHHhhhcCCCccc
Q 010064 397 TLLGSTLAQKRASRILECLRVDKGKQVS 424 (519)
Q Consensus 397 l~~gs~~~~~~A~~~L~~l~~~~~~~~~ 424 (519)
+.+.++.+|+....=.+.|++-..+...
T Consensus 413 L~tAd~sireeivlKvAILaEKyAtDy~ 440 (938)
T KOG1077|consen 413 LETADYSIREEIVLKVAILAEKYATDYS 440 (938)
T ss_pred HhhcchHHHHHHHHHHHHHHHHhcCCcc
Confidence 8888888888887778888877666554
No 111
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.19 Score=55.74 Aligned_cols=245 Identities=19% Similarity=0.162 Sum_probs=158.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
++.+++.....|.+.|...--.+.+-+...+... .+++..++.=...+++.++..|.+.++-+-++ .+.
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~------~i~ 119 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD------KIT 119 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh------HHH
Confidence 6778888888888888888888888887764332 34677777766778999999999988887774 222
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~ 293 (519)
+. +..+|.+++++. ++.++..++-.+.++-. .+.......|.++.|.+++.. .++.+..+|+.+|..+..
T Consensus 120 ey-~~~Pl~~~l~d~---~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D----~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 120 EY-LCDPLLKCLKDD---DPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSD----SNPMVVANALAALSEIHE 189 (734)
T ss_pred HH-HHHHHHHhccCC---ChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcC----CCchHHHHHHHHHHHHHH
Confidence 22 578899999998 78888877665555543 345666789999999999996 799999999999999976
Q ss_pred CCcc-HHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcCC-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064 294 FPSN-ISFILETDLIRYLLEMLGDMELSERILSILSNLVST-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM 371 (519)
Q Consensus 294 ~~~n-~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~ 371 (519)
...+ -...+..-.+..++..+.... ...-+.+|-+|+.+ +..-.... ..+..+...|. +.++.+.-.++.+++
T Consensus 190 ~~~~~~~~~l~~~~~~~lL~al~ec~-EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lq-h~n~avvlsavKv~l 264 (734)
T KOG1061|consen 190 SHPSVNLLELNPQLINKLLEALNECT-EWGQIFILDCLAEYVPKDSREAE---DICERLTPRLQ-HANSAVVLSAVKVIL 264 (734)
T ss_pred hCCCCCcccccHHHHHHHHHHHHHhh-hhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhhc-cCCcceEeehHHHHH
Confidence 5542 222222233444554443332 12233344444441 11111111 13345666666 456777777788887
Q ss_pred HHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHH
Q 010064 372 VMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQK 406 (519)
Q Consensus 372 nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~ 406 (519)
.+...-.. ....+-..+.|+|+.++...+ ..+-
T Consensus 265 ~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qy 297 (734)
T KOG1061|consen 265 QLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQY 297 (734)
T ss_pred HHHHHHHH-HHHHHHHHhcccceeeecccc-hhhH
Confidence 77754222 333344456677777776665 4443
No 112
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.72 E-value=0.037 Score=40.86 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 188 ADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGL 246 (519)
Q Consensus 188 ~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L 246 (519)
+.++..|+++|.+++...+..-.. .-..+++.|+.+|+++ +..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~---~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD---DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS---SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC---CHHHHHHHHHHHhcC
Confidence 467899999999998764444333 5556999999999988 789999999998764
No 113
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.47 E-value=0.19 Score=49.62 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHh
Q 010064 146 EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKL 224 (519)
Q Consensus 146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~l 224 (519)
......|+..|..++--++..|..+.+...+..|+.+|+. ..+.++.+++.+|..+..+++.|...+-+.+++..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 3356778899999888888999999999999999999954 678999999999999999999999999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHH-HhccC
Q 010064 225 IESPVAPNPSVSEAIVANFL-GLSAL 249 (519)
Q Consensus 225 L~s~~~~~~~~~~~a~~aL~-~LS~~ 249 (519)
+++... +.+++-.++-.|+ .|...
T Consensus 185 lk~~~~-~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 185 LKSKST-DRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred Hccccc-cHHHhHHHHHHHHHHHccc
Confidence 998754 6667666655554 45433
No 114
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.073 Score=58.97 Aligned_cols=69 Identities=19% Similarity=0.108 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGN 205 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~ 205 (519)
+.++.+.++.+++.++..|+.++.++-.. ..+.....|.++.|..++...++.+-.+|+.+|..+...+
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 57888888899999999999998887744 3445668999999999999999999999999999998753
No 115
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.76 Score=51.28 Aligned_cols=255 Identities=18% Similarity=0.154 Sum_probs=158.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHH-----
Q 010064 137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA----- 211 (519)
Q Consensus 137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~----- 211 (519)
+=..|.+...-+..+|+..+..|.... .|. +. .++..|=-+|+++.+.+|..|.++|..+|.. .+++..
T Consensus 250 l~s~l~~K~emV~~EaArai~~l~~~~--~r~-l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~-~P~~v~~cN~e 323 (865)
T KOG1078|consen 250 LESCLRHKSEMVIYEAARAIVSLPNTN--SRE-LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMK-HPQAVTVCNLD 323 (865)
T ss_pred HHHHHhchhHHHHHHHHHHHhhccccC--Hhh-cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh-CCccccccchh
Confidence 333455667778889999998887543 232 21 2677777788899999999999999999853 222111
Q ss_pred ----HHhcC---cHHHHHHhhcCCCCCCH-HHHHHHHHHHHHhccCCCChhh-------------hhhCCChHHHHHHhh
Q 010064 212 ----IVKAG---AVHKMLKLIESPVAPNP-SVSEAIVANFLGLSALDSNKPI-------------IGSSGAVPFLVKTLK 270 (519)
Q Consensus 212 ----iv~aG---~v~~Lv~lL~s~~~~~~-~~~~~a~~aL~~LS~~~~~k~~-------------I~~~gai~~LV~lL~ 270 (519)
|-+.+ +.+++-.+|+.+.+.+. .+...+......+|. +.|-. .-..+.+.+|-.+|.
T Consensus 324 lE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD--eFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr 401 (865)
T KOG1078|consen 324 LESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD--EFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLR 401 (865)
T ss_pred HHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--cceEEeHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 11111 22334445555421011 112222333333332 11111 113456788888888
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchh
Q 010064 271 NSDKKVSPQAKQDALRALYNLSIF-PSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPI 349 (519)
Q Consensus 271 ~~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~ 349 (519)
+. +..+-+...+.++..+... ++.+. -++..|+..+.|++...-+..+|.-|-. ++-....- ...+..
T Consensus 402 ~e---Gg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~~~i~~rILhlLG~--EgP~a~~P-skyir~ 470 (865)
T KOG1078|consen 402 EE---GGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEFTQIAVRILHLLGK--EGPKAPNP-SKYIRF 470 (865)
T ss_pred hc---cCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccchHHHHHHHHHHhc--cCCCCCCc-chhhHH
Confidence 74 7888888888888877763 33332 3667888999888877778887776654 12222222 334444
Q ss_pred hhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 350 LVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 350 Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
+...+. =.+..++..|+.+|.++..+.+..+. -+.-.|.+.+.+.+..++.+|...|..+.
T Consensus 471 iyNRvi-LEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 471 IYNRVI-LENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred Hhhhhh-hhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 544333 23678899999999998865444322 23445667777889999999999999998
No 116
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.69 Score=51.15 Aligned_cols=213 Identities=15% Similarity=0.117 Sum_probs=135.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CCh
Q 010064 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNK 253 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k 253 (519)
..+-++.+|.+.-+=++..|..+|+.+...-++. +. -.+|.|.+-|.++ ++.++.+|+..++.|+.-. .+-
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeDp---Dp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLEDP---DPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccCC---CchHHHHHHHHHHHHHhhCCccc
Confidence 3456788888888999999999999988753332 11 2579999999999 9999999999999999643 332
Q ss_pred hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH---HHHHHHHHHH--
Q 010064 254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME---LSERILSILS-- 328 (519)
Q Consensus 254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~---v~~~Al~~L~-- 328 (519)
- ..-|.+.++|... .+--+....+....+|+-...- +-...+++|..++.+.. +.-++..++.
T Consensus 217 L-----~LAP~ffkllttS---sNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~ 284 (877)
T KOG1059|consen 217 L-----QLAPLFYKLLVTS---SNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAV 284 (877)
T ss_pred c-----cccHHHHHHHhcc---CCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheee
Confidence 2 2357778888764 5556677777777777754431 22346788888886543 3334444332
Q ss_pred HhcCC-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHH
Q 010064 329 NLVST-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKR 407 (519)
Q Consensus 329 nLs~~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~ 407 (519)
|+++. +++-..+.- ++..|-.++. ..++.++-.++-++.-+....+...++- -..++..+.+.++.+|-+
T Consensus 285 s~s~g~~d~~asiqL---CvqKLr~fie-dsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlr 355 (877)
T KOG1059|consen 285 SMSSGMSDHSASIQL---CVQKLRIFIE-DSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLR 355 (877)
T ss_pred hhccCCCCcHHHHHH---HHHHHhhhhh-cCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHH
Confidence 34442 233333322 6677777777 5677777777777777765544322211 122355555666666666
Q ss_pred HHHHHHHhh
Q 010064 408 ASRILECLR 416 (519)
Q Consensus 408 A~~~L~~l~ 416 (519)
|..+|--+.
T Consensus 356 ALdLl~gmV 364 (877)
T KOG1059|consen 356 ALDLLYGMV 364 (877)
T ss_pred HHHHHHHHh
Confidence 666655444
No 117
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.65 Score=51.33 Aligned_cols=239 Identities=16% Similarity=0.192 Sum_probs=140.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENS-ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~-~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
...++.+|++.-+-+|..|+..+..+.-.-+ ..|. ++|-|++=|+.+|+.++.+|...++.||..|+.|--.+
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc
Confidence 5667788888888899999988888664333 3333 67999999999999999999999999999888875433
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC-------------------C
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS-------------------D 273 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~-------------------~ 273 (519)
-|.+.++|-..+ +--+.-..+-.+.+|+..++- + ....+++|..++.+. .
T Consensus 220 -----AP~ffkllttSs--NNWmLIKiiKLF~aLtplEPR---L-gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 220 -----APLFYKLLVTSS--NNWVLIKLLKLFAALTPLEPR---L-GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred -----cHHHHHHHhccC--CCeehHHHHHHHhhccccCch---h-hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 477777776542 333444445555666655432 1 222455555555442 0
Q ss_pred -CCCCHHHHHHHHHHHHHhcCCCc-cHHHH--------Hhc--CcHH----HHHHHcCC--HHHHHHHHHHHHHhcCCcc
Q 010064 274 -KKVSPQAKQDALRALYNLSIFPS-NISFI--------LET--DLIR----YLLEMLGD--MELSERILSILSNLVSTPE 335 (519)
Q Consensus 274 -~~~~~~~~~~A~~aL~nLs~~~~-n~~~l--------~~~--g~v~----~Lv~lL~~--~~v~~~Al~~L~nLs~~~e 335 (519)
-.........|+.=|+-+..+.+ |...+ ... .+|+ .++..|.| +.++..|+..|..++.. +
T Consensus 289 g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-k 367 (877)
T KOG1059|consen 289 GMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK-K 367 (877)
T ss_pred CCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh-h
Confidence 11344555566666666666554 44332 111 1222 22344433 34777788777777653 2
Q ss_pred cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC-cHHHHHHHhh
Q 010064 336 GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAG-IASALLELTL 398 (519)
Q Consensus 336 ~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G-~i~~Ll~Ll~ 398 (519)
+-.+|+. .|+..+...+....+..-+.-+..+|.. .+-+.+.+.. -+..|++|..
T Consensus 368 Nl~eIVk------~LM~~~~~ae~t~yrdell~~II~iCS~--snY~~ItdFEWYlsVlveLa~ 423 (877)
T KOG1059|consen 368 NLMEIVK------TLMKHVEKAEGTNYRDELLTRIISICSQ--SNYQYITDFEWYLSVLVELAR 423 (877)
T ss_pred hHHHHHH------HHHHHHHhccchhHHHHHHHHHHHHhhh--hhhhhhhhHHHHHHHHHHHHh
Confidence 3444444 5555554333334555555555555532 2233444433 3666777766
No 118
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.37 E-value=2.2 Score=47.52 Aligned_cols=69 Identities=22% Similarity=0.218 Sum_probs=47.2
Q ss_pred CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhh---HHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 344 PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGD---RQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 344 ~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~---~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
.+.+|.|.-+|+ +.+.++|+.++.++..+|..++++ |+-|. +-=-|++++......++..|...+.+++
T Consensus 882 ~dllPrltPILk-nrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 882 KDLLPRLTPILK-NRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred hhhcccchHhhh-hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 468999999999 678999999999999999876654 33332 1223566666556666666655444443
No 119
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.37 E-value=0.47 Score=51.18 Aligned_cols=273 Identities=12% Similarity=0.051 Sum_probs=150.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
++..++.-+.++.+.+..|..++.++..-.-..-....+.-.........+++++++...+...-.-++. +++...+.
T Consensus 223 mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWstice--Eeid~~~e 300 (858)
T COG5215 223 MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICE--EEIDGEME 300 (858)
T ss_pred heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH--HHhhhHHH
Confidence 4455555566788899999999998775433333444444455555677788898888777765545553 22211111
Q ss_pred ------------------hcCcHHHHHHhhcCCCC-C---CHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhc
Q 010064 214 ------------------KAGAVHKMLKLIESPVA-P---NPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKN 271 (519)
Q Consensus 214 ------------------~aG~v~~Lv~lL~s~~~-~---~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~ 271 (519)
-+.++|.|+.+|....+ + +-....+|...|--.+.. ....|... ++.++=+-+++
T Consensus 301 ~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~--~gd~i~~p-Vl~FvEqni~~ 377 (858)
T COG5215 301 DKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL--KGDKIMRP-VLGFVEQNIRS 377 (858)
T ss_pred HhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH--hhhHhHHH-HHHHHHHhccC
Confidence 23478999999876322 1 112233333333222211 12222222 33333333444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcch
Q 010064 272 SDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDAFP 348 (519)
Q Consensus 272 ~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~ 348 (519)
.+-.-+..|+.++..+..++. ....-+-..++|.+...+.|+- +.+-+.|+++.++.+- ..+++-.+-++
T Consensus 378 ----~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~ 450 (858)
T COG5215 378 ----ESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV---AMIISPCGHLV 450 (858)
T ss_pred ----chhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH---HHhcCcccccc
Confidence 677889999999999988775 2222233567888888887765 6778889999888631 12222122222
Q ss_pred hhhhhc--cCCCCHHHHHHHHHHHHHHhcCChhh-HH--HHH---HcCcHHHHHHHhh--cCCHHHHHHHHHHHHHhhhc
Q 010064 349 ILVDVL--NWTDSPGCQEKASYVLMVMAHKSYGD-RQ--AMI---EAGIASALLELTL--LGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 349 ~Lv~lL--~~s~~~~~qe~A~~~L~nL~~~~~~~-~~--~i~---~~G~i~~Ll~Ll~--~gs~~~~~~A~~~L~~l~~~ 418 (519)
..+.-. .-.++|....+++|...||..+-.+. ++ .++ -..++..|+.-.. ......|..+-.+|.-|..-
T Consensus 451 ~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~ 530 (858)
T COG5215 451 LEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILI 530 (858)
T ss_pred HHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh
Confidence 222111 11246889999999999998652221 11 111 1223333333222 22334566666666666643
No 120
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.30 E-value=2.2 Score=48.96 Aligned_cols=247 Identities=18% Similarity=0.144 Sum_probs=141.3
Q ss_pred HHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhc----CCCC-CCHHHHHH
Q 010064 169 TLAMLGAIPPLAGMLDF-----QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIE----SPVA-PNPSVSEA 238 (519)
Q Consensus 169 ~l~~~G~i~~Lv~lL~s-----~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~----s~~~-~~~~~~~~ 238 (519)
.+.+.|++..|+.+|++ ...++-...+..|..++. -..||+.+++.|+++.|+..+. .+.+ ....+.+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 45568999999999976 233455566777777777 4999999999999999998763 3310 02455555
Q ss_pred HHHHHHHhccC---CCChhhh--hhC--------CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcC
Q 010064 239 IVANFLGLSAL---DSNKPII--GSS--------GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETD 305 (519)
Q Consensus 239 a~~aL~~LS~~---~~~k~~I--~~~--------gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g 305 (519)
...++-.|... .+..... ... .-+..|++.+.+.....++.+....++.|-+|+-+....-..+-.-
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 54444333221 1111110 111 1266777777664344678899999999999998876433222111
Q ss_pred cHHHHHHHc--CCH--HHHHHHHHHHHHhcC----C---cccHHHHhhcCCcchhhhhhccCC-------CCHHHH----
Q 010064 306 LIRYLLEML--GDM--ELSERILSILSNLVS----T---PEGRKAISRVPDAFPILVDVLNWT-------DSPGCQ---- 363 (519)
Q Consensus 306 ~v~~Lv~lL--~~~--~v~~~Al~~L~nLs~----~---~e~r~~i~~~~g~i~~Lv~lL~~s-------~~~~~q---- 363 (519)
. .+.+.+= +.. +-...-+.+++.++. + ..-|..|++ .|.+...++.|... .+++..
T Consensus 271 F-~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 F-KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred H-HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 1 1111111 100 011123444555543 2 245667777 78888888877421 233333
Q ss_pred ----HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcC-CHHHHHHHHHHHHHhhhcC
Q 010064 364 ----EKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG-STLAQKRASRILECLRVDK 419 (519)
Q Consensus 364 ----e~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~g-s~~~~~~A~~~L~~l~~~~ 419 (519)
..+..+|.-|+.+.. ..|.++..+++|.+-.|-... +..+-..|-.+|.-|++++
T Consensus 349 ~psLp~iL~lL~GLa~gh~-~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHE-PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred CCcHHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 235666777777643 344446666776665555543 4455556666776666543
No 121
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.30 E-value=0.58 Score=45.50 Aligned_cols=149 Identities=16% Similarity=0.091 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCChhh-HHHHHhcCcHH
Q 010064 146 EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-----QLADSQISSLYALLNLGIGNDLN-KAAIVKAGAVH 219 (519)
Q Consensus 146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-----~~~~~~~~a~~aL~NLa~~~~~n-k~~iv~aG~v~ 219 (519)
....++|+..+.-++.+ ++.|..|.+.-.--.|..+|.. +.+-++..++..+..|...++.. -..+...++||
T Consensus 93 snRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred cchHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 34567888888888865 6899999888877777788753 45679999999999999875555 44455679999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--------CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 220 KMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--------SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 220 ~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--------~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
..++.+..+ +...+..|+.++-.+-.++..-..|.+ .-.+..+|.-+.+. .+......++++..+|
T Consensus 172 lCLrime~G---SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~---ps~RllKhviRcYlrL 245 (293)
T KOG3036|consen 172 LCLRIMESG---SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSM---PSPRLLKHVIRCYLRL 245 (293)
T ss_pred HHHHHHhcc---cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHh
Confidence 999999999 777788787777666666655544432 12333444444443 7888888889998888
Q ss_pred cCCCccHHHH
Q 010064 292 SIFPSNISFI 301 (519)
Q Consensus 292 s~~~~n~~~l 301 (519)
+.++..+..+
T Consensus 246 sdnprar~aL 255 (293)
T KOG3036|consen 246 SDNPRARAAL 255 (293)
T ss_pred cCCHHHHHHH
Confidence 8887655543
No 122
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.15 E-value=1.2 Score=45.21 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=115.4
Q ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh--HH
Q 010064 134 LKIVV-KDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN--KA 210 (519)
Q Consensus 134 l~~Lv-~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n--k~ 210 (519)
+..+| ..+.+.+..+|..|+.+|...+--+.+.... .++.+...++.++..++..|+.+|+.+..-.... ..
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 55555 5678889999999999999988666433332 3667888887789999999999999998532211 11
Q ss_pred ------HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064 211 ------AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDA 284 (519)
Q Consensus 211 ------~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A 284 (519)
......++..+...+.+. +++++..++-.+..|-....... ....+..|+-++-++....+...++.-
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSE---NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 112235778888899988 78999999888888765433222 134566666666554344556777766
Q ss_pred HHHHHHhcCCCccHHHHHhcCcHHHHHHHc
Q 010064 285 LRALYNLSIFPSNISFILETDLIRYLLEML 314 (519)
Q Consensus 285 ~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL 314 (519)
...+-..+......+..+....++.+-.+.
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 667777776666445566666666665555
No 123
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.09 E-value=0.9 Score=46.39 Aligned_cols=187 Identities=17% Similarity=0.123 Sum_probs=106.2
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC--C-
Q 010064 221 MLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF--P- 295 (519)
Q Consensus 221 Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~--~- 295 (519)
.+..+... +...++.++..|..+....-....+.. ...+..+.+.++. +..+-+..|+.++.-|+.. .
T Consensus 48 ~Id~l~eK---~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk----g~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 48 AIDLLTEK---SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK----GKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHhc---CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHhhhcCCC
Confidence 34444444 578888888888776544322222222 3356677777776 4556667777777766654 2
Q ss_pred ccHHHHHhcCcHHHHHHHcCCH----HHHHHHHHHHHHhcC----CcccHHHHhhcCCcchhhh--hhcc---------C
Q 010064 296 SNISFILETDLIRYLLEMLGDM----ELSERILSILSNLVS----TPEGRKAISRVPDAFPILV--DVLN---------W 356 (519)
Q Consensus 296 ~n~~~l~~~g~v~~Lv~lL~~~----~v~~~Al~~L~nLs~----~~e~r~~i~~~~g~i~~Lv--~lL~---------~ 356 (519)
.....+.+ ...|+|..++.|. .++..++.+|+-++. .++......+ .+..+. .+++ .
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccccC
Confidence 23444433 5777888888643 244555555555443 2222221112 222111 1122 1
Q ss_pred CCCHHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 010064 357 TDSPGCQEKASYVLMVMAHKSYG-DRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK 419 (519)
Q Consensus 357 s~~~~~qe~A~~~L~nL~~~~~~-~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~ 419 (519)
.+++.+...|+...+-|...-+. ..... -...+|.|..++...+..+|..|..+|+.|.+-.
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 22356777775554444433222 22222 2446899999999999999999999999998653
No 124
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.08 E-value=3.7 Score=40.13 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHH
Q 010064 192 ISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVK 267 (519)
Q Consensus 192 ~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~ 267 (519)
-.++..|--++. .++-|..++++-+--.|-.+|..... +.+-++-.+.+.+..|..+++. -..+...+.||..++
T Consensus 97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 344444555555 48889999998764444444432211 2567888899999999877653 334457999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc----C----cHHHHHHHc---CCHHHHHHHHHHHHHhcCCccc
Q 010064 268 TLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET----D----LIRYLLEML---GDMELSERILSILSNLVSTPEG 336 (519)
Q Consensus 268 lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~----g----~v~~Lv~lL---~~~~v~~~Al~~L~nLs~~~e~ 336 (519)
.+.. ++...+.-|+.+|.-+..++.....+.+. - .+..++.-| .+..+...++++..+|+.++..
T Consensus 176 ime~----GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra 251 (293)
T KOG3036|consen 176 IMES----GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA 251 (293)
T ss_pred HHhc----ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence 9998 78899999999998888777644444332 1 222222222 2344888999999999999999
Q ss_pred HHHHhhc-CC-cc-hhhhhhccCCCCHHHHHHHHHHHHHHhc
Q 010064 337 RKAISRV-PD-AF-PILVDVLNWTDSPGCQEKASYVLMVMAH 375 (519)
Q Consensus 337 r~~i~~~-~g-~i-~~Lv~lL~~s~~~~~qe~A~~~L~nL~~ 375 (519)
|.++..+ ++ .- ..+-.++. +++..+..-...+.||+.
T Consensus 252 r~aL~~clPd~Lrd~tfs~~l~--~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 252 RAALRSCLPDQLRDGTFSLLLK--DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHHhhCcchhccchHHHHHh--cChhHHHHHHHHHHHhcc
Confidence 9888652 01 11 12233344 345555554555555553
No 125
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.06 E-value=0.31 Score=50.90 Aligned_cols=246 Identities=17% Similarity=0.153 Sum_probs=133.2
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCH-HHHHHHHHHHHHhcCCChhhH
Q 010064 133 ELKIVVKDLQSE-SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLA-DSQISSLYALLNLGIGNDLNK 209 (519)
Q Consensus 133 ~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~-~~~~~a~~aL~NLa~~~~~nk 209 (519)
.+.-++.-|.++ ....|+.++..|..-+. ++..|..+...|.+..+++.+. .++. ..-..++.+++-++. +..+-
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~-d~~~~ 99 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR-DGLNM 99 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc-CCcch
Confidence 366777777743 45678899988888774 5799999999999999999994 3443 444444555555554 35555
Q ss_pred HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHH-HHHHHhccCCCChhhhhhCCChHHHHHHhhcC-----CCCCCHHHHHH
Q 010064 210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIV-ANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS-----DKKVSPQAKQD 283 (519)
Q Consensus 210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~-~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~-----~~~~~~~~~~~ 283 (519)
..+...+.+..+++++.... ........- .-=.+++ .+ ....+..+..++... ........+.-
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~--~~~~~~~~~~~~~~~ls-------k~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~l 169 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDK--SLDVPSDSDSSRKKNLS-------KV-QQKSRSLCKELLSSGSSWKSPKPPELSPQTL 169 (361)
T ss_pred hhhhchhHHHHHHHHhcccc--ccccccchhhhhhhhhh-------HH-HHHHHHHHHHHHhccccccccCCcccccccH
Confidence 55556677788788887110 000000000 0000000 00 001111111111000 00012222333
Q ss_pred HHHHHHHhc-----------C---C-CccHHHHHhcCcHHHHHHHcCC----H------------H--HHHHHHHHHHHh
Q 010064 284 ALRALYNLS-----------I---F-PSNISFILETDLIRYLLEMLGD----M------------E--LSERILSILSNL 330 (519)
Q Consensus 284 A~~aL~nLs-----------~---~-~~n~~~l~~~g~v~~Lv~lL~~----~------------~--v~~~Al~~L~nL 330 (519)
|+.+|-.++ . . ...+..+.+-|++..++.++.+ . + ..+.++.+|.|-
T Consensus 170 all~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~ 249 (361)
T PF07814_consen 170 ALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESV 249 (361)
T ss_pred HHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 444443331 0 0 1134556677888888887631 0 1 556899999998
Q ss_pred cC-CcccHHHHhhcC-Ccchhhhhhc-cC--CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcH
Q 010064 331 VS-TPEGRKAISRVP-DAFPILVDVL-NW--TDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIA 390 (519)
Q Consensus 331 s~-~~e~r~~i~~~~-g~i~~Lv~lL-~~--s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i 390 (519)
+. ..++...+.... +.++.+...+ .. ...+.++..++.++.||+++++..++.+...+++
T Consensus 250 T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~ 314 (361)
T PF07814_consen 250 TFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLG 314 (361)
T ss_pred HhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhc
Confidence 87 556666655432 2222333322 21 1123446778999999999988877777655443
No 126
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=1.1 Score=49.51 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=67.2
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC-C-ccc--
Q 010064 263 PFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVS-T-PEG-- 336 (519)
Q Consensus 263 ~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~-~-~e~-- 336 (519)
..++..|+. +.+..+++.|+..|+-+|...+ ...| |.-|++.|. |..+++...-=..-|+. + .+.
T Consensus 371 d~Ii~sLkt---erDvSirrravDLLY~mcD~~N-ak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~W 441 (938)
T KOG1077|consen 371 DTIINSLKT---ERDVSIRRRAVDLLYAMCDVSN-AKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSW 441 (938)
T ss_pred HHHHHHhcc---ccchHHHHHHHHHHHHHhchhh-HHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcch
Confidence 344455553 3788999999999999986543 3332 344555553 33355544333334443 1 110
Q ss_pred ----HH-------HHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 010064 337 ----RK-------AISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAG 388 (519)
Q Consensus 337 ----r~-------~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G 388 (519)
.- .+++ .+.|..+++++- .++++|..|+..+....+. +...+.|++.|
T Consensus 442 yVdviLqLiriagd~vs-deVW~RvvQiVv--Nnedlq~yaak~~fe~Lq~-~a~hE~mVKvg 500 (938)
T KOG1077|consen 442 YVDVILQLIRIAGDYVS-DEVWYRVVQIVV--NNEDLQGYAAKRLFEYLQK-PACHENMVKVG 500 (938)
T ss_pred hHHHHHHHHHHhccccc-HHHHHHhheeEe--cchhhhHHHHHHHHHHHhh-hHHHHHHHHhh
Confidence 00 1234 578899999887 3788999888887776655 45555555543
No 127
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.02 E-value=0.36 Score=44.07 Aligned_cols=117 Identities=12% Similarity=0.076 Sum_probs=94.6
Q ss_pred HHHHhcCcHHHHHHHcCC--------HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCC-CHHHHHHHHHH
Q 010064 299 SFILETDLIRYLLEMLGD--------MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTD-SPGCQEKASYV 369 (519)
Q Consensus 299 ~~l~~~g~v~~Lv~lL~~--------~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~-~~~~qe~A~~~ 369 (519)
..++..+++..|+.++.+ .++...++.++..|-.+.-.-....+ ..++..++.+++... ++.+...|..+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHH
Confidence 467888999999999943 23566788888888776554455666 578999999998443 57899999999
Q ss_pred HHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 370 LMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 370 L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
|-++...++...+.+.++=-++.|+..+...++.+|..|..++--|-
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999998887888888888999999999999999999888776554
No 128
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.93 E-value=4.1 Score=40.24 Aligned_cols=199 Identities=23% Similarity=0.231 Sum_probs=123.4
Q ss_pred cCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC
Q 010064 173 LGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD 250 (519)
Q Consensus 173 ~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~ 250 (519)
..+++.|+..|.. ..+.++..|+.+|.++.. + +.++.|-+..+.+ -..+++.+-.++..+-..+
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp---~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDP---CKEVRETCELAIKRLEWKD 131 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCC---ccccchHHHHHHHHHHHhh
Confidence 3478999998865 557788899999999873 2 3556666766555 5666665555554443211
Q ss_pred C-----Ch-hhh-------hhCCChHHHHHHhhcCCCCCCHH-HHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC
Q 010064 251 S-----NK-PII-------GSSGAVPFLVKTLKNSDKKVSPQ-AKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD 316 (519)
Q Consensus 251 ~-----~k-~~I-------~~~gai~~LV~lL~~~~~~~~~~-~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~ 316 (519)
. +. +.+ ...+-|.-|-..|... ..+. -+..|...|+|+-.. .+|..|..-+.+
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~---t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~ 198 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDE---TKPLFERYRAMFYLRNIGTE----------EAINALIDGLAD 198 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHHHhc---chhHHHHHhhhhHhhccCcH----------HHHHHHHHhccc
Confidence 0 00 111 1222344444444331 2222 233444455544211 133444444543
Q ss_pred HH--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhcc-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHH
Q 010064 317 ME--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLN-WTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASAL 393 (519)
Q Consensus 317 ~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~-~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~L 393 (519)
+. ++..+..+|+-|-+ +-.|+.|.+.|. ...+|.++-.|+.+|+.++. ++ +++.|
T Consensus 199 ~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL 256 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVL 256 (289)
T ss_pred chHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHH
Confidence 33 67788888876543 346677777664 24678999999999998874 33 68888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhhcCC
Q 010064 394 LELTLLGSTLAQKRASRILECLRVDKG 420 (519)
Q Consensus 394 l~Ll~~gs~~~~~~A~~~L~~l~~~~~ 420 (519)
.+++.+..+-+++.+..+|..+.....
T Consensus 257 ~e~~~D~~~vv~esc~valdm~eyens 283 (289)
T KOG0567|consen 257 KEYLGDEERVVRESCEVALDMLEYENS 283 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998875543
No 129
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.90 E-value=3.9 Score=44.42 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCC-------CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh----cCCCHHHHHHHHHHHHH
Q 010064 132 EELKIVVKDLQSE-------SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML----DFQLADSQISSLYALLN 200 (519)
Q Consensus 132 ~~l~~Lv~~L~s~-------~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL----~s~~~~~~~~a~~aL~N 200 (519)
..++.|+++|... ++..-..|..+|...+.. ..+. .+.|++.++ ++++-.-++.++.|++.
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~-----i~~pVl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDK-----IMRPVLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhH-----hHHHHHHHHHHhccCchhhhHHHHHHHhhh
Confidence 4588888888642 334556777777766522 1112 234454544 55777889999999999
Q ss_pred hcCCCh-hhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc
Q 010064 201 LGIGND-LNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA 248 (519)
Q Consensus 201 La~~~~-~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~ 248 (519)
.-.+.. .....++. .++|.+...+.++ ..-+++.++|++..++.
T Consensus 393 vm~gp~~~~lT~~V~-qalp~i~n~m~D~---~l~vk~ttAwc~g~iad 437 (858)
T COG5215 393 VMHGPCEDCLTKIVP-QALPGIENEMSDS---CLWVKSTTAWCFGAIAD 437 (858)
T ss_pred hhcCccHHHHHhhHH-hhhHHHHHhcccc---eeehhhHHHHHHHHHHH
Confidence 887522 23444443 4788888888766 67778878888777763
No 130
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.83 E-value=0.095 Score=45.45 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=59.8
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 010064 132 EELKIVVKDLQ-SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGI 203 (519)
Q Consensus 132 ~~l~~Lv~~L~-s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~ 203 (519)
+.+..|++.|. +.++....-|+.-|..+++..+..|..+-+.|+=..++.++.++|++++..|+.++..|-.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44888899894 4456667779999999999999999988889999999999999999999999999887654
No 131
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=2.6 Score=48.85 Aligned_cols=248 Identities=17% Similarity=0.117 Sum_probs=139.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
+..|+..|++.+..++..||+-+..++...+ . .++ ..+|...++++.- ++...-..++.+|..|+.. .--.-..
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~-~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~r-GlLlps~ 417 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P-ELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALR-GLLLPSL 417 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCc--H-HHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-CCcchHH
Confidence 7888888899999999999999999998875 2 222 2356666665543 3345555788888888864 1111111
Q ss_pred HhcCcHHHHHHhhcCCCC-----CCHHHHHHHHHHHHHhccCCC---ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064 213 VKAGAVHKMLKLIESPVA-----PNPSVSEAIVANFLGLSALDS---NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDA 284 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~-----~~~~~~~~a~~aL~~LS~~~~---~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A 284 (519)
++ .++|.+++-+.-... ....++.+|+.++|.++..-+ .++ +.+.-+-..|...+-. .+..+++.|
T Consensus 418 l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFD----revncRRAA 491 (1133)
T KOG1943|consen 418 LE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFD----REVNCRRAA 491 (1133)
T ss_pred HH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcC----chhhHhHHH
Confidence 11 356666664422100 035688999999998875422 133 2222222233333333 578899999
Q ss_pred HHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHH-HHhcCCcccHHHHhhcCCcchhhhhh-ccCCCCH
Q 010064 285 LRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSIL-SNLVSTPEGRKAISRVPDAFPILVDV-LNWTDSP 360 (519)
Q Consensus 285 ~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L-~nLs~~~e~r~~i~~~~g~i~~Lv~l-L~~s~~~ 360 (519)
..||........|.+. ++ .|+...+.-. .+.++-..| ..++..+..+.-+.+ .|+.- +. +-++
T Consensus 492 sAAlqE~VGR~~n~p~-----Gi-~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~------~L~t~Kv~-HWd~ 558 (1133)
T KOG1943|consen 492 SAALQENVGRQGNFPH-----GI-SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN------HLLTKKVC-HWDV 558 (1133)
T ss_pred HHHHHHHhccCCCCCC-----ch-hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH------HHHhcccc-cccH
Confidence 9998766544333211 11 1222222111 111211111 122224444444444 22222 22 2368
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064 361 GCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRAS 409 (519)
Q Consensus 361 ~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~ 409 (519)
.+++.++++|.+|....++ ....+..|.|+..+..++...+.-+-
T Consensus 559 ~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~ 603 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVF 603 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhH
Confidence 8999999999998865443 23346678888887777776655433
No 132
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.80 E-value=2.1 Score=42.25 Aligned_cols=227 Identities=15% Similarity=0.114 Sum_probs=138.9
Q ss_pred CCHHHHHHHHHHHHHhcCCChhhHHHHHh-cCcHHHHHHhhcCCCC----CC--H---HHHHHHHHHHHHhccCCCChhh
Q 010064 186 QLADSQISSLYALLNLGIGNDLNKAAIVK-AGAVHKMLKLIESPVA----PN--P---SVSEAIVANFLGLSALDSNKPI 255 (519)
Q Consensus 186 ~~~~~~~~a~~aL~NLa~~~~~nk~~iv~-aG~v~~Lv~lL~s~~~----~~--~---~~~~~a~~aL~~LS~~~~~k~~ 255 (519)
-+++.++.|+.-|..--...+.-.-.+-. .|.+..|++=+-+-.. ++ . .-...|++.|-.++.+++.|..
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 46777777766666554432333333333 4888888772221100 01 1 1223556666778999999999
Q ss_pred hhhCCChHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHh
Q 010064 256 IGSSGAVPFLVKTLKNSDKK-VSPQAKQDALRALYNLSIFPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNL 330 (519)
Q Consensus 256 I~~~gai~~LV~lL~~~~~~-~~~~~~~~A~~aL~nLs~~~~--n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nL 330 (519)
+.+....-.|...|...... .-...+...+..+..|...++ .+.+++++..+|..+..++ +.-.+.-|..++..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99988777777777652101 125578889999999987554 6788889999999999984 444677788888888
Q ss_pred cCCcccHHHHhhcC-------CcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHH-----HHHhh
Q 010064 331 VSTPEGRKAISRVP-------DAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASAL-----LELTL 398 (519)
Q Consensus 331 s~~~e~r~~i~~~~-------g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~L-----l~Ll~ 398 (519)
-.++.+-.-+..+. .++..++..|....++.+-++.+.+-..|+.+ +..++++.+ .+|.. ..-+.
T Consensus 167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~aL~~--~LP~~Lrd~~f~~~l 243 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREALRQ--CLPDQLRDGTFSNIL 243 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHHHHH--HS-GGGTSSTTTTGG
T ss_pred HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHHHHH--hCcHHHhcHHHHHHH
Confidence 77776666554422 24445555444356888999999999999987 455665553 22221 11122
Q ss_pred cCCHHHHHHHHHHHHHh
Q 010064 399 LGSTLAQKRASRILECL 415 (519)
Q Consensus 399 ~gs~~~~~~A~~~L~~l 415 (519)
.+++.+++--..++.++
T Consensus 244 ~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 244 KDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp CS-HHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 34677777666666654
No 133
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.76 E-value=0.24 Score=41.45 Aligned_cols=90 Identities=13% Similarity=0.087 Sum_probs=64.1
Q ss_pred HHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH--cCcHHHHHHHhh
Q 010064 322 RILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE--AGIASALLELTL 398 (519)
Q Consensus 322 ~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~--~G~i~~Ll~Ll~ 398 (519)
.++..|...+. -+..-....+ ..++.++..+. ..++.++..|+.+|.|++.. .+..++. ..+.+.|..++.
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLD--EILPPVLKCFD-DQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 34555555544 2222233333 37888888888 67899999999999999853 3444443 568899999999
Q ss_pred cCCHHHHHHHHHHHHHhhh
Q 010064 399 LGSTLAQKRASRILECLRV 417 (519)
Q Consensus 399 ~gs~~~~~~A~~~L~~l~~ 417 (519)
+.++.+|..|..+-++|++
T Consensus 79 D~d~~Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 79 DPDENVRSAAELLDRLLKD 97 (97)
T ss_pred CCchhHHHHHHHHHHHhcC
Confidence 9999999988777766653
No 134
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.69 E-value=0.13 Score=48.77 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHhc----------------CcHHHHHHHcCC--------HHHHHHHHHHHHHhcCC
Q 010064 278 PQAKQDALRALYNLSIFPSNISFILET----------------DLIRYLLEMLGD--------MELSERILSILSNLVST 333 (519)
Q Consensus 278 ~~~~~~A~~aL~nLs~~~~n~~~l~~~----------------g~v~~Lv~lL~~--------~~v~~~Al~~L~nLs~~ 333 (519)
......++..|.||+........+++. ..+..|+..+.. .+-......+|.||+..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 345667888999999887766654432 256666666622 12556788999999999
Q ss_pred cccHHHHhhcCC-c--chhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH---cCcHHHHHHHhh
Q 010064 334 PEGRKAISRVPD-A--FPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE---AGIASALLELTL 398 (519)
Q Consensus 334 ~e~r~~i~~~~g-~--i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~---~G~i~~Ll~Ll~ 398 (519)
+++|+.+.+... . +..|+-++.+ .+..-+.-++.+|.|+|..... ...++. .+++|.|+--+.
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~-~s~iRR~Gva~~IrNccFd~~~-H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEH-KSVIRRGGVAGTIRNCCFDTDS-HEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhcc-CcHHHHHHHHHHHHHhhccHhH-HHHhcCchhhhhHHHHHhhcc
Confidence 999999987432 2 5677777774 4777788899999999998444 444443 467777666666
No 135
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.47 E-value=2.4 Score=45.06 Aligned_cols=185 Identities=12% Similarity=0.162 Sum_probs=117.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCChh---hHHHHHhcCcHHHHHHhhcCCCCC----CHHHHHHHHHHHHHhccCCC
Q 010064 179 LAGMLDFQLADSQISSLYALLNLGIGNDL---NKAAIVKAGAVHKMLKLIESPVAP----NPSVSEAIVANFLGLSALDS 251 (519)
Q Consensus 179 Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~---nk~~iv~aG~v~~Lv~lL~s~~~~----~~~~~~~a~~aL~~LS~~~~ 251 (519)
+..++...+++-+.+|+.....++.+.+- ||+.++++=+.+-+-+++.+.+.| +.-.+..++.+|......++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 55667777778888888888888876443 588899997788888887665332 32334445555655555554
Q ss_pred C--hhhhhhCCChHHHHHHhhcCCCCCCHH------HHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH---HH
Q 010064 252 N--KPIIGSSGAVPFLVKTLKNSDKKVSPQ------AKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME---LS 320 (519)
Q Consensus 252 ~--k~~I~~~gai~~LV~lL~~~~~~~~~~------~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~---v~ 320 (519)
. .+.|+ ..||.|..++... .+++ ...++-.+|+-++..+.....++..|+++.+.++-.-++ -.
T Consensus 96 lAsh~~~v--~~IP~llev~~~~---~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKG---IDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhc---CCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhH
Confidence 3 23332 3589999999876 3333 788999999999999889999999999999998763222 12
Q ss_pred HHHHHHHHHhcC----CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHH
Q 010064 321 ERILSILSNLVS----TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMV 372 (519)
Q Consensus 321 ~~Al~~L~nLs~----~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~n 372 (519)
.-++.++--++. .++....+.. .|..+..-+. ..+...+-+.|.+|..
T Consensus 171 alal~Vlll~~~~~~cw~e~~~~fla---li~~va~df~-~~~~a~KfElc~lL~~ 222 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSETIERFLA---LIAAVARDFA-VLHNALKFELCHLLSA 222 (698)
T ss_pred HHHHHHHHHHHHhcccCcCCHHHHHH---HHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 233333333332 3333333333 3444443333 2334455556666653
No 136
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.47 E-value=0.66 Score=46.75 Aligned_cols=221 Identities=18% Similarity=0.135 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHHHHhc-CcHHHH
Q 010064 146 EEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAAIVKA-GAVHKM 221 (519)
Q Consensus 146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a-G~v~~L 221 (519)
.-.+.-|+.++.++... ++.|..+.. .-+-..+++.++. +..++|-..+-+++-|+.. +...+.|-+- ..+.-|
T Consensus 163 ~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~dli~dl 240 (432)
T COG5231 163 FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHH
Confidence 34567788999998854 577776654 4566778888877 6788999999999999994 6666555443 567778
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh---CCChHHHHHHhhcCCCCCCHHHHHHHHHH-----------
Q 010064 222 LKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS---SGAVPFLVKTLKNSDKKVSPQAKQDALRA----------- 287 (519)
Q Consensus 222 v~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~---~gai~~LV~lL~~~~~~~~~~~~~~A~~a----------- 287 (519)
+++.+... ...+...+++++.++..- ..|..|-+ .|-+..-|++|... .=.+.+++.+.-..
T Consensus 241 i~iVk~~~--keKV~Rlc~~Iv~n~~dK-~pK~~I~~~lll~~~~k~vq~L~er-kysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 241 IAIVKERA--KEKVLRLCCGIVANVLDK-SPKGYIFSPLLLNDISKCVQVLLER-KYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhcc-cccchhhhhHhhcchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhhhhh
Confidence 88877642 467778889999997652 22333332 34455566666543 11223332222111
Q ss_pred ------HHHh-----cCC---------CccHHHHHhc--CcHHHHHHHcC--CHH-HHHHHHHHHHHhcC-CcccHHHHh
Q 010064 288 ------LYNL-----SIF---------PSNISFILET--DLIRYLLEMLG--DME-LSERILSILSNLVS-TPEGRKAIS 341 (519)
Q Consensus 288 ------L~nL-----s~~---------~~n~~~l~~~--g~v~~Lv~lL~--~~~-v~~~Al~~L~nLs~-~~e~r~~i~ 341 (519)
+..| .-+ .+|...+.+. ..+..|..++. .+. +..-||.-+..+.. .||.+..+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 1111 101 1244555544 46777777773 233 44567777777777 899998888
Q ss_pred hcCCcchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064 342 RVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA 374 (519)
Q Consensus 342 ~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~ 374 (519)
. -|+=..++++++ +++++++-+|..++..+.
T Consensus 397 K-yg~k~~im~L~n-h~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 K-YGVKEIIMNLIN-HDDDDVKFEALQALQTCI 427 (432)
T ss_pred H-hhhHHHHHHHhc-CCCchhhHHHHHHHHHHH
Confidence 8 689999999999 678999999988876654
No 137
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=94.46 E-value=6.4 Score=41.19 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=97.9
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc--C--------CCHHHHHHHHHHHHHhc
Q 010064 134 LKIVVKDLQSES-EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD--F--------QLADSQISSLYALLNLG 202 (519)
Q Consensus 134 l~~Lv~~L~s~~-~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~--s--------~~~~~~~~a~~aL~NLa 202 (519)
...+++.|..+- ...+...+..++.|+++. ..-..+...--+..|+.+-+ + .+-.+...++++|+|+.
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk-~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDK-DGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccc-cccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 456777777665 456777888999999774 22221211112334444332 1 34578899999999999
Q ss_pred CCChhhHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCC-Chhhh-hhCCChHHHHHHhhcCC-----
Q 010064 203 IGNDLNKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDS-NKPII-GSSGAVPFLVKTLKNSD----- 273 (519)
Q Consensus 203 ~~~~~nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~-~k~~I-~~~gai~~LV~lL~~~~----- 273 (519)
.++...+....+...+-.+++.+..... ..-++...-+..|+-|+.... .|..+ ...++++++.+++....
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse 205 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSE 205 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCC
Confidence 9999999999998777777765432200 012233334455555554443 34444 45788999999886541
Q ss_pred ---CC---CCHHHHHHHHHHHHHhcCCCc
Q 010064 274 ---KK---VSPQAKQDALRALYNLSIFPS 296 (519)
Q Consensus 274 ---~~---~~~~~~~~A~~aL~nLs~~~~ 296 (519)
+. ........++.++.|++...+
T Consensus 206 ~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 206 INVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 11 123355567777788876543
No 138
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.29 E-value=1.2 Score=50.78 Aligned_cols=133 Identities=19% Similarity=0.226 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh-HHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN-KAAI 212 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n-k~~i 212 (519)
++-+++.|+ +.-.+..|++++..++...-..-..-.-..+++.|..+++.....++...+.++-.|......+ ....
T Consensus 613 L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~ 690 (1233)
T KOG1824|consen 613 LPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAEL 690 (1233)
T ss_pred HHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 445555553 6667888999999888543222211111347888999998877778888888777776532111 2222
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS 272 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~ 272 (519)
.++ ++.-|..++... +..+.+.+...|..+.........-...-.++.++.+++++
T Consensus 691 ~e~-vL~el~~Lises---dlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 691 LEA-VLVELPPLISES---DLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHH-HHHHhhhhhhHH---HHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence 222 222233334333 56777778777777776655444434455677777777664
No 139
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.10 E-value=0.11 Score=45.13 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=60.5
Q ss_pred CcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 345 DAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 345 g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
..+..|+.+|..+.++.+..-||.=|..++...+..+..+-+.|+-..+++|+.++++.++..|..+++.+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 456789999964567778888899999999887888888889999999999999999999999999999875
No 140
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.04 E-value=2.1 Score=50.03 Aligned_cols=214 Identities=16% Similarity=0.161 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCChhhHHHHHhc--CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC--CChhhhhhCC
Q 010064 185 FQLADSQISSLYALLNLGIGNDLNKAAIVKA--GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD--SNKPIIGSSG 260 (519)
Q Consensus 185 s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a--G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~--~~k~~I~~~g 260 (519)
+.+..+|..+-..|..++.. +......... .+...|..-+++. +...+.....+|..|-... +....+ ..
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~---~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k 738 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSS---SSPAQASRLKCLKRLLKLLSAEHCDLI--PK 738 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHhccHHHHHHH--HH
Confidence 35778899999999988875 4433332221 2344455555554 3444444444443332211 112211 11
Q ss_pred ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcC------cHHHHHHHc-----CCHHHHHHH-HHHHH
Q 010064 261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETD------LIRYLLEML-----GDMELSERI-LSILS 328 (519)
Q Consensus 261 ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g------~v~~Lv~lL-----~~~~v~~~A-l~~L~ 328 (519)
.||-++-.++. .+...++.|..+|++|.. +....+.| .|...+.++ ++......+ +-++.
T Consensus 739 ~I~EvIL~~Ke----~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~ 810 (1176)
T KOG1248|consen 739 LIPEVILSLKE----VNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAIT 810 (1176)
T ss_pred HHHHHHHhccc----ccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 23333333344 789999999999999983 22222222 445555444 232211111 33444
Q ss_pred HhcCCcccHHHHhhc---CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHH
Q 010064 329 NLVSTPEGRKAISRV---PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQ 405 (519)
Q Consensus 329 nLs~~~e~r~~i~~~---~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~ 405 (519)
.+... -..+.+. .+.+..+.-.|. +.++++...|+..+-.++..-++.+-.-...-++|.++.++.+.+..++
T Consensus 811 ~il~e---~~~~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r 886 (1176)
T KOG1248|consen 811 HILQE---FKNILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVR 886 (1176)
T ss_pred HHHHH---HhccccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHH
Confidence 44331 1112220 234555555666 6789999999999999998766544444455678999999888888888
Q ss_pred HHHHHHHHHhh
Q 010064 406 KRASRILECLR 416 (519)
Q Consensus 406 ~~A~~~L~~l~ 416 (519)
..+.-+|..|.
T Consensus 887 ~Kvr~LlekLi 897 (1176)
T KOG1248|consen 887 KKVRLLLEKLI 897 (1176)
T ss_pred HHHHHHHHHHH
Confidence 88777777665
No 141
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.68 E-value=0.23 Score=46.34 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=64.9
Q ss_pred cHHHHHhcCcHHHHHHHcC-----------CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHH
Q 010064 297 NISFILETDLIRYLLEMLG-----------DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK 365 (519)
Q Consensus 297 n~~~l~~~g~v~~Lv~lL~-----------~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~ 365 (519)
-...+++.|++..|+.+|. +.+....++.||..|..+..+...+...++++..|+..|. +.++.++..
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~-s~~~~~r~~ 177 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLD-SPNIKTRKL 177 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHC-CCCHHHHHH
Confidence 3566788899999998882 2347788999999999999999999998999999999998 788999999
Q ss_pred HHHHHHHHhc
Q 010064 366 ASYVLMVMAH 375 (519)
Q Consensus 366 A~~~L~nL~~ 375 (519)
++.+|..+|.
T Consensus 178 ~leiL~~lc~ 187 (187)
T PF06371_consen 178 ALEILAALCL 187 (187)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 9999998883
No 142
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.66 E-value=4.2 Score=47.76 Aligned_cols=270 Identities=17% Similarity=0.162 Sum_probs=152.9
Q ss_pred cchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc---
Q 010064 128 EEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLG--- 202 (519)
Q Consensus 128 ~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa--- 202 (519)
.|++-.+..+..-+.. ...+.|..|+..|..|+..- .+.+- .-++|.+|.++..+.+.+|..|+.+|..+.
T Consensus 418 ~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~V 493 (1431)
T KOG1240|consen 418 EGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALV 493 (1431)
T ss_pred cceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence 3443333444333332 25678899999999998652 23322 347999999999999999999988887765
Q ss_pred CCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc------------------cCCCCh---hhhhhC--
Q 010064 203 IGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS------------------ALDSNK---PIIGSS-- 259 (519)
Q Consensus 203 ~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS------------------~~~~~k---~~I~~~-- 259 (519)
..-++.-..|+-.-++|-|-.++.+.. ...++..-+..|..|+ .++.+- ..-...
T Consensus 494 r~~~~~daniF~eYlfP~L~~l~~d~~--~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~ 571 (1431)
T KOG1240|consen 494 RDIPPSDANIFPEYLFPHLNHLLNDSS--AQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTE 571 (1431)
T ss_pred cCCCcccchhhHhhhhhhhHhhhccCc--cceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchH
Confidence 223444455555668888888887741 2223322222222222 111111 110001
Q ss_pred -----CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc----CcHHHHHHHcCCHHHHHHH--HHHHH
Q 010064 260 -----GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET----DLIRYLLEMLGDMELSERI--LSILS 328 (519)
Q Consensus 260 -----gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~----g~v~~Lv~lL~~~~v~~~A--l~~L~ 328 (519)
..|..+|..|-.. .++-+++.-+..|.-||. ++... =.++.|+..|+|.+..-.+ ...+.
T Consensus 572 ~~~L~~~V~~~v~sLlsd---~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 572 LQALHHTVEQMVSSLLSD---SPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIV 642 (1431)
T ss_pred HHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhcc
Confidence 1222233322221 344566666666655542 22221 2567777888776633322 22222
Q ss_pred HhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064 329 NLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRA 408 (519)
Q Consensus 329 nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A 408 (519)
-++..-..| . ++ +..+|.|.+-|. ...+.+...|.++|..|+...--.+..+. .+++...-++.+++.-+|..+
T Consensus 643 gvsi~VG~r-s-~s-eyllPLl~Q~lt-D~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~ 716 (1431)
T KOG1240|consen 643 GVSIFVGWR-S-VS-EYLLPLLQQGLT-DGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAV 716 (1431)
T ss_pred ceEEEEeee-e-HH-HHHHHHHHHhcc-CcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHH
Confidence 222221111 1 22 356777777777 56788999999999999975322222333 355666778888999999998
Q ss_pred HHHHHHhhhc
Q 010064 409 SRILECLRVD 418 (519)
Q Consensus 409 ~~~L~~l~~~ 418 (519)
+.++.-....
T Consensus 717 ~~iI~~~~~~ 726 (1431)
T KOG1240|consen 717 LGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHhh
Confidence 8888777643
No 143
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.58 E-value=0.16 Score=49.29 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCcccHHHHhhc------CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH-HHHHHcCcHH
Q 010064 319 LSERILSILSNLVSTPEGRKAISRV------PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR-QAMIEAGIAS 391 (519)
Q Consensus 319 v~~~Al~~L~nLs~~~e~r~~i~~~------~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~-~~i~~~G~i~ 391 (519)
-+..|+.+|+.|+..+.+-..+..+ +..+..|+++|...+++.++|.|+.+|.|||++++... ....+.+.|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 4667888888888876666666543 23566777778767889999999999999999977654 4556889999
Q ss_pred HHHHHhhcCCHHHH
Q 010064 392 ALLELTLLGSTLAQ 405 (519)
Q Consensus 392 ~Ll~Ll~~gs~~~~ 405 (519)
.|+.++......++
T Consensus 220 ~Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 220 HLIAFIEDAEQNAH 233 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987654443
No 144
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.30 E-value=2.5 Score=41.79 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHh
Q 010064 319 LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELT 397 (519)
Q Consensus 319 v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll 397 (519)
....|+.+|--++- ++..|..+.+ ...+..|+.+|..+..+.++..+..+|..+..+++.+...+.+.+++..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 44567888888887 8888888888 799999999996567789999999999999999899999999999999999999
Q ss_pred hcC--CHHHHHHHHHHHHHhh
Q 010064 398 LLG--STLAQKRASRILECLR 416 (519)
Q Consensus 398 ~~g--s~~~~~~A~~~L~~l~ 416 (519)
.+. +..++-+....|-..-
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccccHHHhHHHHHHHHHHH
Confidence 975 4466666555555444
No 145
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.11 E-value=2.3 Score=41.98 Aligned_cols=219 Identities=16% Similarity=0.201 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhh-------cCCC--H--HHH-HHHHHHHHHhcCCChhhHHH
Q 010064 145 SEEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGML-------DFQL--A--DSQ-ISSLYALLNLGIGNDLNKAA 211 (519)
Q Consensus 145 ~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~lL-------~s~~--~--~~~-~~a~~aL~NLa~~~~~nk~~ 211 (519)
+++.|..|+..|..--...++..-.+.. -|.+..|++=+ ..+. + .-+ -.|+..|--+|. +++-|..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 6778888888887755444566666666 56666665422 2221 2 122 344445555666 5999999
Q ss_pred HHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010064 212 IVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRA 287 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~a 287 (519)
++++.+.-.|.-+|..... +-+.++-...+++..|...++. -..+.+.+.+|..++.+.. ++.-.+.-|.-+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~----GselSKtvAtfI 162 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF----GSELSKTVATFI 162 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH----S-HHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh----ccHHHHHHHHHH
Confidence 9999886666666654311 1244566778888888865432 3344578999999999998 788899999999
Q ss_pred HHHhcCCCccHHHHHhc--------CcHHHHHHHc-C--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchh------h
Q 010064 288 LYNLSIFPSNISFILET--------DLIRYLLEML-G--DMELSERILSILSNLVSTPEGRKAISRVPDAFPI------L 350 (519)
Q Consensus 288 L~nLs~~~~n~~~l~~~--------g~v~~Lv~lL-~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~------L 350 (519)
+..+-.++.....+.+. .++..++.-+ . ++.+.+..+++-..|+.++..|.++.. ++|. +
T Consensus 163 lqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~---~LP~~Lrd~~f 239 (262)
T PF04078_consen 163 LQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ---CLPDQLRDGTF 239 (262)
T ss_dssp HHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH---HS-GGGTSSTT
T ss_pred HHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH---hCcHHHhcHHH
Confidence 99888776655444432 2333333333 2 334888999999999999999998876 2222 2
Q ss_pred hhhccCCCCHHHHHHHHHHHHHH
Q 010064 351 VDVLNWTDSPGCQEKASYVLMVM 373 (519)
Q Consensus 351 v~lL~~s~~~~~qe~A~~~L~nL 373 (519)
..+++ +++.++..-...+.|+
T Consensus 240 ~~~l~--~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 240 SNILK--DDPSTKRWLQQLLSNL 260 (262)
T ss_dssp TTGGC--S-HHHHHHHHHHHHHT
T ss_pred HHHHh--cCHHHHHHHHHHHHHh
Confidence 22333 3666766655555554
No 146
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.93 E-value=5.3 Score=42.55 Aligned_cols=233 Identities=15% Similarity=0.057 Sum_probs=133.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCh---hhHHHHHhcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHhcCCC
Q 010064 136 IVVKDLQSESEEQRREAASKVRSLAKENS---ETRVTLAMLGAIPPLAGMLDF-------QLADSQISSLYALLNLGIGN 205 (519)
Q Consensus 136 ~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~---~~r~~l~~~G~i~~Lv~lL~s-------~~~~~~~~a~~aL~NLa~~~ 205 (519)
.+..++...+.+.|..|+-.+.++++.+. .+|+.+.+.=+.+-+=++|.+ ++.-.+..+...|.-.|..
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~- 93 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV- 93 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence 35566677788888889999999998753 567667777777777788865 2233456666677777764
Q ss_pred hhhHHHHHhcCcHHHHHHhhcCCCCCC----HHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHH
Q 010064 206 DLNKAAIVKAGAVHKMLKLIESPVAPN----PSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAK 281 (519)
Q Consensus 206 ~~nk~~iv~aG~v~~Lv~lL~s~~~~~----~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~ 281 (519)
++-...=---..||.|.+++....++| ..+.+.+-..|...+..+.....++..|+++.+-++-... ... .-.
T Consensus 94 pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~--~~~-~d~ 170 (698)
T KOG2611|consen 94 PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP--DGS-HDM 170 (698)
T ss_pred hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC--CCc-hhH
Confidence 543222112256899999987654322 2256677778888888888888888999999999876553 122 222
Q ss_pred HHHHHHHHHh----cCCCccHHHHHhcCcHHHHHHHc--CCHHHHHHHHHHHHHhcCCc-------ccHHHHhhcCCcch
Q 010064 282 QDALRALYNL----SIFPSNISFILETDLIRYLLEML--GDMELSERILSILSNLVSTP-------EGRKAISRVPDAFP 348 (519)
Q Consensus 282 ~~A~~aL~nL----s~~~~n~~~l~~~g~v~~Lv~lL--~~~~v~~~Al~~L~nLs~~~-------e~r~~i~~~~g~i~ 348 (519)
.-|+..|.-+ -+.++....+..- |+.+..-+ .+...+.+.|.+|..+-..+ .-+..+.. .....
T Consensus 171 alal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~-~~l~~ 247 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWA-DYLRT 247 (698)
T ss_pred HHHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchH-HHHHH
Confidence 2333333222 2233333333221 22221111 12235667788877543321 12211221 12233
Q ss_pred hhhhhccCCCCHHHHHHHHHHHHHHhc
Q 010064 349 ILVDVLNWTDSPGCQEKASYVLMVMAH 375 (519)
Q Consensus 349 ~Lv~lL~~s~~~~~qe~A~~~L~nL~~ 375 (519)
-++.+|+..-.|.-+..|.....|+++
T Consensus 248 G~~~IL~~kv~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 248 GVVAILQNKVAPSQRLPALILAANMMH 274 (698)
T ss_pred HHHHHHhcccCchhcChHHHHHHHHHH
Confidence 455566533345555566666666665
No 147
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.80 E-value=0.78 Score=49.93 Aligned_cols=210 Identities=15% Similarity=0.206 Sum_probs=125.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCh--hhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC--
Q 010064 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGND--LNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-- 250 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~--~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-- 250 (519)
.|..++..|++..+.+++.|+.....|+.--. ..-+.+.+.|.| |.+-|... .+++...++.+++.+-...
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~---ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED---YPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc---cHHHHHHHHHHHHHHhhhhcc
Confidence 35556678889999999999999888875211 112334445543 55666666 7888888877777665432
Q ss_pred -CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cH---HHH-HhcCcHHHHHHHcC--CHHHHHH
Q 010064 251 -SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NI---SFI-LETDLIRYLLEMLG--DMELSER 322 (519)
Q Consensus 251 -~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~---~~l-~~~g~v~~Lv~lL~--~~~v~~~ 322 (519)
..++. -.|.+|.|..+|.+ ...++..+.+..++-++.+.. .. .-+ +..+ |+.+|. ..+++.+
T Consensus 680 ~~mqpP--i~~ilP~ltPILrn----kh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfe----Lvd~Lks~nKeiRR~ 749 (975)
T COG5181 680 RSMQPP--ISGILPSLTPILRN----KHQKVVANTIALVGTICMNSPEYIGVREWMRICFE----LVDSLKSWNKEIRRN 749 (975)
T ss_pred cccCCc--hhhccccccHhhhh----hhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHH----HHHHHHHhhHHHHHh
Confidence 22333 26889999999998 688899999999999987654 21 111 1222 444554 3458889
Q ss_pred HHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHH---HHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhc
Q 010064 323 ILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPG---CQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLL 399 (519)
Q Consensus 323 Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~---~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~ 399 (519)
|..+++.++. +|.- .+.+..|++-|+ ..... +...|..++..-|- + ..++|.|+.=+..
T Consensus 750 A~~tfG~Is~------aiGP-qdvL~~LlnnLk-vqeRq~RvctsvaI~iVae~cg-p---------fsVlP~lm~dY~T 811 (975)
T COG5181 750 ATETFGCISR------AIGP-QDVLDILLNNLK-VQERQQRVCTSVAISIVAEYCG-P---------FSVLPTLMSDYET 811 (975)
T ss_pred hhhhhhhHHh------hcCH-HHHHHHHHhcch-HHHHHhhhhhhhhhhhhHhhcC-c---------hhhHHHHHhcccC
Confidence 9988888774 1211 233445555554 21111 11222333332221 1 1256666666666
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 010064 400 GSTLAQKRASRILECLRV 417 (519)
Q Consensus 400 gs~~~~~~A~~~L~~l~~ 417 (519)
+...+|.-..++++.+-+
T Consensus 812 Pe~nVQnGvLkam~fmFe 829 (975)
T COG5181 812 PEANVQNGVLKAMCFMFE 829 (975)
T ss_pred chhHHHHhHHHHHHHHHH
Confidence 666666666666665554
No 148
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.66 E-value=6.4 Score=40.19 Aligned_cols=192 Identities=16% Similarity=0.085 Sum_probs=106.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--ChhhH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM--LGAIPPLAGMLDFQLADSQISSLYALLNLGIG--NDLNK 209 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~--~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~--~~~nk 209 (519)
+...+..|.......|..|+..|.++...... -..+.. .-++..+.+.++.+..+-+..|+.++.-++.. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 66677777777788888999888886655422 222221 23577788888877766666777766666654 34556
Q ss_pred HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHH---HHHHHhccCCCC-hhhhhhCCChH--HHHHHhhcCC------CCCC
Q 010064 210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIV---ANFLGLSALDSN-KPIIGSSGAVP--FLVKTLKNSD------KKVS 277 (519)
Q Consensus 210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~---~aL~~LS~~~~~-k~~I~~~gai~--~LV~lL~~~~------~~~~ 277 (519)
..+++. ..|.|.+.+.+... +..++..++ +++..+...+.. -... ...+. +.....+... ...+
T Consensus 124 ~ei~~~-~~~~L~~~l~d~s~-~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 124 EEIFEE-LKPVLKRILTDSSA-SPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred HHHHHH-HHHHHHHHHhCCcc-chHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 666664 78899998887633 445544443 334444443221 1100 11222 2222222210 0123
Q ss_pred HHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHh
Q 010064 278 PQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDM--ELSERILSILSNL 330 (519)
Q Consensus 278 ~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nL 330 (519)
+.+...|+.+-.-|...-+ ....-.-...++.|..+|.++ +++..|-.+|.-|
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5677777766666654333 211122245688899998644 4666555444433
No 149
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.66 E-value=1.8 Score=46.60 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=113.1
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccH
Q 010064 219 HKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNI 298 (519)
Q Consensus 219 ~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~ 298 (519)
..+.+.+.++ +...+..+.-.|.++|.+......++...++..|.+++.++............+.++..+-.+.--.
T Consensus 86 ~~i~e~l~~~---~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 86 KRIMEILTEG---NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHhCC---CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 4566777777 6777777888888999888877788888889999999988532234567777777777765544333
Q ss_pred HHHHhcCcHHHHHHHcC----CHHHHHHHHHHHHHhcCCcc-cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHH
Q 010064 299 SFILETDLIRYLLEMLG----DMELSERILSILSNLVSTPE-GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVM 373 (519)
Q Consensus 299 ~~l~~~g~v~~Lv~lL~----~~~v~~~Al~~L~nLs~~~e-~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL 373 (519)
...+...+|.....+.. +..+-..|+.+|.+++.... .++.+.. +--+..|+..|+ ..+..++..|...+..|
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~e-ev~i~~li~hlq-~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAE-EVPIETLIRHLQ-VSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHh-cCcHHHHHHHHH-hcchHHHHHHHHHHHHH
Confidence 33344444444444442 22377789999999998555 4555555 678899999998 56788888888888888
Q ss_pred hcCCh-hhHHHHH
Q 010064 374 AHKSY-GDRQAMI 385 (519)
Q Consensus 374 ~~~~~-~~~~~i~ 385 (519)
....+ +.|..+.
T Consensus 241 ~~~a~~~~R~~~~ 253 (713)
T KOG2999|consen 241 FRKAPDDKRFEMA 253 (713)
T ss_pred HhhCChHHHHHHH
Confidence 77633 3444444
No 150
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.60 E-value=0.41 Score=37.85 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 010064 320 SERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAG 388 (519)
Q Consensus 320 ~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G 388 (519)
.+.|+++++|+++++.+...+.+ .+.++.++++...++...++.-|.++|+-++.. .+-++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 35799999999998888887776 689999999998777788898899999888876 55566555554
No 151
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.59 E-value=0.84 Score=43.22 Aligned_cols=120 Identities=13% Similarity=0.050 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHh----------------cCCHHHHHHhhcC------CCHHHHHHHHHHHHHhcC
Q 010064 146 EEQRREAASKVRSLAKENSETRVTLAM----------------LGAIPPLAGMLDF------QLADSQISSLYALLNLGI 203 (519)
Q Consensus 146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~----------------~G~i~~Lv~lL~s------~~~~~~~~a~~aL~NLa~ 203 (519)
...-..++..|.||++.+ .....+.. ...+..|+..+-. ...+-....+.++.|++.
T Consensus 9 ~~~adl~~MLLsNlT~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSD-SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred cchHHHHHHHHHHhccch-HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 334456777888888765 33332322 1246666665533 234456778999999999
Q ss_pred CChhhHHHHHhc--Cc--HHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhC---CChHHHHHHhh
Q 010064 204 GNDLNKAAIVKA--GA--VHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSS---GAVPFLVKTLK 270 (519)
Q Consensus 204 ~~~~nk~~iv~a--G~--v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~---gai~~LV~lL~ 270 (519)
.++.|..+++. +. +..|+-++++. +..-+.-++++|.|++.+.+....+... +.+|.|+--|.
T Consensus 88 -~~~gR~~~l~~~~~~~~l~kLl~ft~~~---s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 -LPEGRQFFLDPQRYDGPLQKLLPFTEHK---SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred -CHHHHHHHhCchhhhhHHHHHHHHhccC---cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 49999999975 45 78888888887 6777888999999999998887777663 45555544443
No 152
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.30 E-value=7.1 Score=36.29 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCc-HHHHHH
Q 010064 145 SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGA-VHKMLK 223 (519)
Q Consensus 145 ~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~-v~~Lv~ 223 (519)
++.+|..++.++..|+..-+..-+ ..++.+...|+++++.++..|+.+|.+|... +-.|. .|- +..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~----k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKV----KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Cceee----hhhhhHHHHH
Confidence 467889999999998876544333 3578999999999999999999999999874 22221 133 377888
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhccC
Q 010064 224 LIESPVAPNPSVSEAIVANFLGLSAL 249 (519)
Q Consensus 224 lL~s~~~~~~~~~~~a~~aL~~LS~~ 249 (519)
++.++ ++.++..|...+..++..
T Consensus 71 ~l~D~---~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDE---NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCC---CHHHHHHHHHHHHHHHHh
Confidence 88887 899999999888888765
No 153
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.06 E-value=9.7 Score=40.06 Aligned_cols=108 Identities=10% Similarity=0.191 Sum_probs=81.8
Q ss_pred HHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hhhhhhCCChHHHHHHhh-cCCCCCCHHHHHHHHHH
Q 010064 211 AIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KPIIGSSGAVPFLVKTLK-NSDKKVSPQAKQDALRA 287 (519)
Q Consensus 211 ~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~~I~~~gai~~LV~lL~-~~~~~~~~~~~~~A~~a 287 (519)
-+++ ...+..|..++++....-+.+...|+.++...-.+++. -..|.+.|.++.+++.+. .. -..+.++....-.+
T Consensus 100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~-i~~s~e~l~~lP~~ 178 (379)
T PF06025_consen 100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKG-ILPSSEVLTSLPNV 178 (379)
T ss_pred cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccC-CCCcHHHHHHHHHH
Confidence 3445 44566666677775433466777777778777666554 566667999999999888 32 23567788888888
Q ss_pred HHHhcCCCccHHHHHhcCcHHHHHHHcCCHHH
Q 010064 288 LYNLSIFPSNISFILETDLIRYLLEMLGDMEL 319 (519)
Q Consensus 288 L~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~v 319 (519)
|.-||.+......+.+.+.++.++.++.+++.
T Consensus 179 l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~ 210 (379)
T PF06025_consen 179 LSAICLNNRGLEKVKSSNPLDKLFEIFTSPDY 210 (379)
T ss_pred HhHHhcCHHHHHHHHhcChHHHHHHHhCCHHH
Confidence 89999999999999999999999999988873
No 154
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=91.88 E-value=5.1 Score=41.85 Aligned_cols=266 Identities=18% Similarity=0.169 Sum_probs=137.3
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCC-CHHHH-HHHHHHHHHHhccChhhHHHHHhcCCHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSE-SEEQR-REAASKVRSLAKENSETRVTLAMLGAIPPL 179 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~-~~~~~-~~Aa~~L~~La~~~~~~r~~l~~~G~i~~L 179 (519)
...|+..+..|.....+...+..++..|. .+.+++.+... +.+.- ..++..+.-++.+. ..-..+...+.+..+
T Consensus 36 ~s~Rr~sll~La~K~~~~~Fr~~~ra~g~---~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~-~~~~l~~~~~~~~ll 111 (361)
T PF07814_consen 36 SSVRRSSLLELASKCADPQFRRQFRAHGL---VKRLFKALSDAPDDDILALATAAILYVLSRDG-LNMHLLLDRDSLRLL 111 (361)
T ss_pred ccHHHHHHHHHHHHhCCHHHHHHHHHcCc---HHHHHHHhccccchHHHHHHHHHHHHHHccCC-cchhhhhchhHHHHH
Confidence 34577777888888889999999999998 89999988543 33233 33444444555443 455545556667777
Q ss_pred HHhhcCCCH-HHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcC------CCCCCHHHHHHHHHHHHHh------
Q 010064 180 AGMLDFQLA-DSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIES------PVAPNPSVSEAIVANFLGL------ 246 (519)
Q Consensus 180 v~lL~s~~~-~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s------~~~~~~~~~~~a~~aL~~L------ 246 (519)
+.+|..+.. +...... .. ...+-.++. ...+..+...+.. ...+...-+..+..++-.+
T Consensus 112 ~~Ll~~~~~~~~~~~~~------~~-~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~~ 183 (361)
T PF07814_consen 112 LKLLKVDKSLDVPSDSD------SS-RKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLRE 183 (361)
T ss_pred HHHhccccccccccchh------hh-hhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHhh
Confidence 888872100 0000000 00 001111111 1111111111100 0000111122222222222
Q ss_pred --------ccC-CCChhhhhhCCChHHHHHHhhc----C--------CCCCCHHHHHHHHHHHHHhcCCC-ccHHHHHhc
Q 010064 247 --------SAL-DSNKPIIGSSGAVPFLVKTLKN----S--------DKKVSPQAKQDALRALYNLSIFP-SNISFILET 304 (519)
Q Consensus 247 --------S~~-~~~k~~I~~~gai~~LV~lL~~----~--------~~~~~~~~~~~A~~aL~nLs~~~-~n~~~l~~~ 304 (519)
... +..|+.+...|++..++.++.. . ....+......++.+|-|.+... +|...++..
T Consensus 184 ~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~ 263 (361)
T PF07814_consen 184 AGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLSH 263 (361)
T ss_pred cccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHHh
Confidence 111 1237777788999999999862 1 01122334556777777777654 477776654
Q ss_pred --CcHHHHHHHc-C---C--HHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhcc-------------CCCCHHH
Q 010064 305 --DLIRYLLEML-G---D--MELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLN-------------WTDSPGC 362 (519)
Q Consensus 305 --g~v~~Lv~lL-~---~--~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~-------------~s~~~~~ 362 (519)
+.++.+...+ . + ..+...++++|.||+. +++.+.++.. .+....+..+.. ....-+.
T Consensus 264 ~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~ 342 (361)
T PF07814_consen 264 RSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFAS-PKLGQQLGLIVTSFFCVLSLPNYVPEESSFDI 342 (361)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhh-hHhccchHHHHHhhcccccccccccccccchH
Confidence 3343333332 1 1 1256789999999998 6666666654 333332222211 0112345
Q ss_pred HHHHHHHHHHHhcCChhh
Q 010064 363 QEKASYVLMVMAHKSYGD 380 (519)
Q Consensus 363 qe~A~~~L~nL~~~~~~~ 380 (519)
.-.+.+++.||+..++.+
T Consensus 343 ~IL~Lg~LINL~E~s~~n 360 (361)
T PF07814_consen 343 LILALGLLINLVEHSEAN 360 (361)
T ss_pred HHHHHHhHHHheeeCccC
Confidence 566788888888765543
No 155
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.80 E-value=2.9 Score=44.51 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=79.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh-------------HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN-------------KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVA 241 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n-------------k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~ 241 (519)
.+..|+.+|++ +++...++.++.-|..+.+.. |++++.. .+|.|++..+.. +...+..-.-
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~---~~~~k~~yL~ 345 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEA---DDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhc---ChhhHHHHHH
Confidence 45678888865 777788888888888763332 4445544 788888888876 5556776677
Q ss_pred HHHHhccCCCChhhhh-h-CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC
Q 010064 242 NFLGLSALDSNKPIIG-S-SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP 295 (519)
Q Consensus 242 aL~~LS~~~~~k~~I~-~-~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~ 295 (519)
+|.++-.+-+ +..+. + ...+|.|++.|.. .+.+++..++.+|..+....
T Consensus 346 ALs~ll~~vP-~~vl~~~l~~LlPLLlqsL~~----~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 346 ALSHLLKNVP-KSVLLPELPTLLPLLLQSLSL----PDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHhhCC-HHHHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHcC
Confidence 7777766544 33333 3 5689999999977 68889999999999988765
No 156
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=91.67 E-value=20 Score=37.76 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-C---CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHH
Q 010064 146 EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-F---QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKM 221 (519)
Q Consensus 146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s---~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~L 221 (519)
..+-..|+..+..+-..+|..-..+.+.|+++.++..+. . ++.++....-.+|..||. |....+.+.+.+.++.+
T Consensus 123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~ 201 (379)
T PF06025_consen 123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKL 201 (379)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHH
Confidence 456677899999988888888888899999999999887 3 678888999999999999 69999999999999999
Q ss_pred HHhhcCC
Q 010064 222 LKLIESP 228 (519)
Q Consensus 222 v~lL~s~ 228 (519)
++++.++
T Consensus 202 f~if~s~ 208 (379)
T PF06025_consen 202 FEIFTSP 208 (379)
T ss_pred HHHhCCH
Confidence 9988775
No 157
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.53 E-value=0.92 Score=37.98 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=51.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh--cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK--AGAVHKMLKLIESPVAPNPSVSEAIVANFLG 245 (519)
Q Consensus 174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~--aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~ 245 (519)
-++++++..+..++..++..|+.+|.|++.. .+..++. ..+++.|.+++.++ ++.++..| ..|-+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~---d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADP---DENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCC---chhHHHHH-HHHHH
Confidence 3789999999999999999999999999974 2334443 36889999999988 78887766 34433
No 158
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.43 E-value=0.56 Score=45.54 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=66.8
Q ss_pred hHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhccChhhHHHHH-hcCCHH
Q 010064 104 SKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQ-----SESEEQRREAASKVRSLAKENSETRVTLA-MLGAIP 177 (519)
Q Consensus 104 ~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~-----s~~~~~~~~Aa~~L~~La~~~~~~r~~l~-~~G~i~ 177 (519)
.|..++.+|++++..|.|.+.+...+-...++.++..|. .++...++-|+..|.+|+..+....+.++ +.++|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 356788899999999999988877777777777766663 45777889999999999998876665554 488999
Q ss_pred HHHHhhcCCC
Q 010064 178 PLAGMLDFQL 187 (519)
Q Consensus 178 ~Lv~lL~s~~ 187 (519)
.|+.+++...
T Consensus 220 ~Li~FiE~a~ 229 (257)
T PF12031_consen 220 HLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHH
Confidence 9999997643
No 159
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.39 E-value=20 Score=40.48 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=49.7
Q ss_pred CHHHHHHhh----cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC
Q 010064 175 AIPPLAGML----DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD 250 (519)
Q Consensus 175 ~i~~Lv~lL----~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~ 250 (519)
+..+++.+| ++....+...++.++.+|...+.+.-.. ++..|--++.++ ...++-+|..+|-.++...
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp---~~~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSP---KVALRFAAVRTLNKVAMKH 313 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCc---HHHHHHHHHHHHHHHHHhC
Confidence 344555444 4577889999999999998754432221 677777788888 7889999999998888554
No 160
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=91.26 E-value=1.8 Score=46.02 Aligned_cols=210 Identities=14% Similarity=0.079 Sum_probs=107.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcC----CChh--h-HHHHHhcCcHHHHHHhh-cCCCCCCHHHHHHHHHHHHH
Q 010064 174 GAIPPLAGMLDFQLADSQISSLYALLNLGI----GNDL--N-KAAIVKAGAVHKMLKLI-ESPVAPNPSVSEAIVANFLG 245 (519)
Q Consensus 174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~----~~~~--n-k~~iv~aG~v~~Lv~lL-~s~~~~~~~~~~~a~~aL~~ 245 (519)
.+...+...|.+..-..|+.++|++.|++. +.+. . ...+.. -.+..+++.- ....+ +..+...+..+|.|
T Consensus 433 ~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad-~dkV~~navraLgn 510 (728)
T KOG4535|consen 433 DAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASAD-KDKVKSNAVRALGN 510 (728)
T ss_pred HHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhh-hhhhhhHHHHHHhh
Confidence 344555555655667789999999999872 1111 1 112211 1233333322 11111 45677777777777
Q ss_pred hccCC----CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCcc--HHHHHhcCcHHHHHHHcCCH--
Q 010064 246 LSALD----SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSN--ISFILETDLIRYLLEMLGDM-- 317 (519)
Q Consensus 246 LS~~~----~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n--~~~l~~~g~v~~Lv~lL~~~-- 317 (519)
++.-- +.-......|.+..++....- ....+++-+|+.++.||..++.- ...=....+++.|+.++.+.
T Consensus 511 llQvlq~i~~~~~~e~~~~~~~~l~~~v~~---~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~N 587 (728)
T KOG4535|consen 511 LLQFLQPIEKPTFAEIIEESIQALISTVLT---EAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKN 587 (728)
T ss_pred HHHHHHHhhhccHHHHHHHHHHhcccceec---ccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhcc
Confidence 76421 111111123333333332222 26788999999999999987652 11111234677788887544
Q ss_pred -HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHH
Q 010064 318 -ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLEL 396 (519)
Q Consensus 318 -~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~L 396 (519)
+++..|..+|.--..-...-..+. =.|..++..|.|+. +..+.+.++.+. .+++.+-+ +|..|+.+
T Consensus 588 FKVRi~AA~aL~vp~~re~~~d~~~---Lsw~~lv~aLi~s~-----~~v~f~eY~~~D---sl~~q~c~--av~hll~l 654 (728)
T KOG4535|consen 588 FKVRIRAAAALSVPGKREQYGDQYA---LSWNALVTALQKSE-----DTIDFLEYKYCD---SLRTQICQ--ALIHLLSL 654 (728)
T ss_pred ceEeehhhhhhcCCCCcccchhHHh---HHHHHHHHHHHHHH-----HHHHHHHHHHHH---HHHHHHHH--HHHHHHHH
Confidence 477788877754332111111111 24556777776531 123455555542 23333322 34455555
Q ss_pred hhcCC
Q 010064 397 TLLGS 401 (519)
Q Consensus 397 l~~gs 401 (519)
+.+.+
T Consensus 655 a~Ssd 659 (728)
T KOG4535|consen 655 ASSSD 659 (728)
T ss_pred hhccc
Confidence 55433
No 161
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.21 E-value=2.9 Score=43.14 Aligned_cols=199 Identities=14% Similarity=0.075 Sum_probs=138.1
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHH-----HHHhc--CcHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 171 AMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKA-----AIVKA--GAVHKMLKLIESPVAPNPSVSEAIVANF 243 (519)
Q Consensus 171 ~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~-----~iv~a--G~v~~Lv~lL~s~~~~~~~~~~~a~~aL 243 (519)
...+.+..|+..|..-+-+.+..++.+..|+.......+. -+... .++..|+.--.++ ++.-.+...|
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~-----dial~~g~ml 147 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP-----DIALNCGDML 147 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST-----TTHHHHHHHH
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc-----cccchHHHHH
Confidence 3456788899999888899999999999999876444432 23322 4566666655554 4444455566
Q ss_pred HHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC-CCccHHHHHhc---CcHHHHHHHcCCHH-
Q 010064 244 LGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI-FPSNISFILET---DLIRYLLEMLGDME- 318 (519)
Q Consensus 244 ~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~-~~~n~~~l~~~---g~v~~Lv~lL~~~~- 318 (519)
.....++.....|.....+..+.+.+.. .+.++..+|..++.-|-. +.......+.. ..+.....+|.+++
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~----~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY 223 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQL----PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY 223 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTS----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcC----CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe
Confidence 6666666666677777788888888887 799999999999999754 44454555554 35666777787666
Q ss_pred -HHHHHHHHHHHhcCCcccHHHH---hhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh
Q 010064 319 -LSERILSILSNLVSTPEGRKAI---SRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG 379 (519)
Q Consensus 319 -v~~~Al~~L~nLs~~~e~r~~i---~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~ 379 (519)
++..++..|+.|-.++.+...+ ++.+.-+..++.+|. +.+..+|-+|..+.-...+.+..
T Consensus 224 vtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~-d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 224 VTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLR-DKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-SS-
T ss_pred EeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhc-CcchhhhHHHHHHHHHHHhCCCC
Confidence 7789999999999877776644 333567778888888 67889999998888877776543
No 162
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.15 E-value=2.4 Score=38.68 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=91.7
Q ss_pred ChHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-Cccc
Q 010064 261 AVPFLVKTLKN-SDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEG 336 (519)
Q Consensus 261 ai~~LV~lL~~-~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~ 336 (519)
-+..++.-|.. . .+..++..++-++..+- +..... ...-+-..+-.++.+.+ -...++.+|..|-. .++.
T Consensus 4 ~l~~lL~~L~~~~---~~~~~r~~a~v~l~k~l--~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv 77 (157)
T PF11701_consen 4 ELDTLLTSLDMLR---QPEEVRSHALVILSKLL--DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDV 77 (157)
T ss_dssp CCCHHHHHHHCTT---TSCCHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHhcccC---CCHhHHHHHHHHHHHHH--HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHH
Confidence 35556665553 2 56678888888887773 112221 12222333334444433 45567777777766 6677
Q ss_pred HHHHhhcCCcchhhhhhcc-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcC-CHH-HHHHHHHHHH
Q 010064 337 RKAISRVPDAFPILVDVLN-WTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG-STL-AQKRASRILE 413 (519)
Q Consensus 337 r~~i~~~~g~i~~Lv~lL~-~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~g-s~~-~~~~A~~~L~ 413 (519)
...+...+|+.+.++.++. ...+...+..++.+|..=|.+ +.+...+...+++-|.+++..+ +.. +|.+|...|.
T Consensus 78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 7777766899999999887 345778888888888776654 4455555555689999999654 455 6888877765
Q ss_pred H
Q 010064 414 C 414 (519)
Q Consensus 414 ~ 414 (519)
.
T Consensus 156 K 156 (157)
T PF11701_consen 156 K 156 (157)
T ss_dssp H
T ss_pred c
Confidence 4
No 163
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.03 E-value=5.2 Score=43.90 Aligned_cols=134 Identities=18% Similarity=0.246 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
+..++..-+ ++...|..|+..|....+.-++.... ++..++.+++.++..++..|...|-.+|.+++++-..+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 556666544 67889999999999999888877775 57899999999999999999999999999876665544
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY 289 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~ 289 (519)
+..|+++|++. ++.-...+-.+|..|-..++ .+.+..|..-+... +.++..++..++..|.
T Consensus 98 ----aDvL~QlL~td---d~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 ----ADVLVQLLQTD---DPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESS-KSGDEQVRERALKFLR 158 (556)
T ss_dssp ----HHHHHHHTT------HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH----HS-HHHHHHHHHHHH
T ss_pred ----HHHHHHHHhcc---cHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhc-ccCchHHHHHHHHHHH
Confidence 67899999987 55555555555555432211 22333333333210 1146667777776664
No 164
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.02 E-value=6.6 Score=42.54 Aligned_cols=153 Identities=14% Similarity=0.091 Sum_probs=103.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCH----HHHHHHHHHHHHhcCCChhhH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLA----DSQISSLYALLNLGIGNDLNK 209 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~----~~~~~a~~aL~NLa~~~~~nk 209 (519)
...+++.+.+++...|..|...+..++. ++.....+....++..|.+++.+++. ++...++.++..+-.+.--..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 5678888999999999999999999995 56788888899999999999988554 455555555555442211000
Q ss_pred HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL 288 (519)
Q Consensus 210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL 288 (519)
..+....|-.+..+..-... +..+...|++.|-++...+. .+..+.+.--+..|+..++. .+..++..|...|
T Consensus 164 -~~~~~~fV~~~a~~V~~~~~-~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~----~n~~i~~~aial~ 237 (713)
T KOG2999|consen 164 -ESVSNDFVVSMASYVNAKRE-DANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV----SNQRIQTCAIALL 237 (713)
T ss_pred -eecccHHHHHHHHHHhhhhh-cccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh----cchHHHHHHHHHH
Confidence 01111122223332221111 45677888888888877665 46666678889999999987 6888888877777
Q ss_pred HHhcC
Q 010064 289 YNLSI 293 (519)
Q Consensus 289 ~nLs~ 293 (519)
-.|..
T Consensus 238 nal~~ 242 (713)
T KOG2999|consen 238 NALFR 242 (713)
T ss_pred HHHHh
Confidence 66654
No 165
>PRK14707 hypothetical protein; Provisional
Probab=90.72 E-value=17 Score=45.57 Aligned_cols=257 Identities=19% Similarity=0.144 Sum_probs=150.4
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcCCCHHH-HHHHHHHHHHhcCCChhhHH
Q 010064 134 LKIVVKDLQ-SESEEQRREAASKVRS-LAKENSETRVTLAMLGAIPPLAGMLDFQLADS-QISSLYALLNLGIGNDLNKA 210 (519)
Q Consensus 134 l~~Lv~~L~-s~~~~~~~~Aa~~L~~-La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~-~~~a~~aL~NLa~~~~~nk~ 210 (519)
+-..+..|+ -.+......|+..|.. +. .++..+..+-..++-..|=.+=+-++..+ +..+...-..|.. +..-..
T Consensus 249 va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~ 326 (2710)
T PRK14707 249 LGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCK 326 (2710)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhh
Confidence 444555443 2333444555555554 55 44566666654444444444444455544 4444444444544 466555
Q ss_pred HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHH-HHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064 211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY 289 (519)
Q Consensus 211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL-~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~ 289 (519)
.+-..++-..|-.+.+-+ +..+...++-+| ..|..+++.+..+-..|.-..|-.+-+-. +++.++..|...-.
T Consensus 327 ~~~~~~~~~~LNalsKWp---d~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp---~~~~c~~aa~~LA~ 400 (2710)
T PRK14707 327 ALNARGLSTALNALSKWP---DNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWP---DTPVCAAAASALAE 400 (2710)
T ss_pred ccchHHHHHHHHHhhcCC---CchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCC---CchHHHHHHHHHHH
Confidence 554455556666666766 555555444444 56888877777775566555554454443 55666665555556
Q ss_pred HhcCCCccHHHHHhcCcHHHHHHHc---CCHHHHHHHHHHHH-HhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHH
Q 010064 290 NLSIFPSNISFILETDLIRYLLEML---GDMELSERILSILS-NLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK 365 (519)
Q Consensus 290 nLs~~~~n~~~l~~~g~v~~Lv~lL---~~~~v~~~Al~~L~-nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~ 365 (519)
.|..+.+-+.. ++...|..+++-| .+.+++..+...|. .|+-+.+.++.+-- .++...|--+-+|.++|.+.+.
T Consensus 401 ~l~~d~~l~~~-~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p-~~va~~LnalSKWPd~p~c~~a 478 (2710)
T PRK14707 401 HVVDDLELRKG-LDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDP-INVTQALDALSKWPDTPICGQT 478 (2710)
T ss_pred HhccChhhhhh-cchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcCh-HHHHHHHHHhhcCCCChhHHHH
Confidence 66655444443 4455555555555 24456655555554 34447777777765 3444455455578889988888
Q ss_pred HHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCC
Q 010064 366 ASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGS 401 (519)
Q Consensus 366 A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs 401 (519)
|-.+...|++. .+.++.+--.++...|-.|..-++
T Consensus 479 a~~La~~l~~~-~~l~~a~~~q~~~~~L~aLSK~Pd 513 (2710)
T PRK14707 479 ASALAARLAHE-RRLRKALKPQEVVIALHSLSKWPD 513 (2710)
T ss_pred HHHHHHHhccc-HHHHhhcCHHHHHHHHHHhhcCCC
Confidence 88888888887 456777766677777777777665
No 166
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=90.60 E-value=10 Score=44.78 Aligned_cols=232 Identities=16% Similarity=0.085 Sum_probs=119.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcc---ChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChh--
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKE---NSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDL-- 207 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~---~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~-- 207 (519)
++-+|.++.....++|..|+..|..+... -+..-..+--.-.+|-|-.|+.+ ...-++..-+..|..||.....
T Consensus 464 lPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl 543 (1431)
T KOG1240|consen 464 LPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL 543 (1431)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHH
Confidence 88889999989999999999998885422 22222223223344555455544 3334555555556555531111
Q ss_pred -hHHHHHhcCcHHHHHH-hhcCCCCCCH---HHHHHHHHHHHHhccCCC-C-hhhhhh---------------CCChHHH
Q 010064 208 -NKAAIVKAGAVHKMLK-LIESPVAPNP---SVSEAIVANFLGLSALDS-N-KPIIGS---------------SGAVPFL 265 (519)
Q Consensus 208 -nk~~iv~aG~v~~Lv~-lL~s~~~~~~---~~~~~a~~aL~~LS~~~~-~-k~~I~~---------------~gai~~L 265 (519)
....+..+|....... -..... ++. ++...+......|..+++ + |..+.+ .-.++.|
T Consensus 544 e~~q~~~~~g~~n~~nset~~~~~-~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshL 622 (1431)
T KOG1240|consen 544 ELTQELRQAGMLNDPNSETAPEQN-YNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHL 622 (1431)
T ss_pred HHHHHHHhcccccCcccccccccc-cchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHH
Confidence 1111111222111111 000000 000 111111122222222222 1 222222 2235566
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHH-HHhh
Q 010064 266 VKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRK-AISR 342 (519)
Q Consensus 266 V~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~-~i~~ 342 (519)
+..|+. .+...+..-...+..++..-. ..-++...+|-|.+-|.|.+ +...|+.+|..|....--++ .+.+
T Consensus 623 iTfLND----kDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~ 696 (1431)
T KOG1240|consen 623 ITFLND----KDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD 696 (1431)
T ss_pred HHHhcC----ccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH
Confidence 666655 466666655555555443211 11245567787888887765 88999999999987444444 3333
Q ss_pred cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 343 VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 343 ~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
.+....-+|- +.+.-++..++.++....+.
T Consensus 697 ---i~~~v~PlL~-hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 697 ---ILQDVLPLLC-HPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred ---HHHhhhhhee-CchHHHHHHHHHHHHHHHhh
Confidence 4555566677 46788999999988877654
No 167
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.48 E-value=3.6 Score=38.17 Aligned_cols=108 Identities=18% Similarity=0.184 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC---------CCHHHHHHHHHHHHHhc
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDF---------QLADSQISSLYALLNLG 202 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s---------~~~~~~~~a~~aL~NLa 202 (519)
....+++.|.+..... ..+..|+...+.. ..--..|.+.||+..|+.+|.. .+...+..++.+|..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4666777787665443 3444555433333 3445567788999999998853 45678899999999999
Q ss_pred CCChhhHHHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 203 IGNDLNKAAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGL 246 (519)
Q Consensus 203 ~~~~~nk~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L 246 (519)
. +......++. .+++..|+..|.++ +..++..++-+|..+
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~---~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSP---NIKTRKLALEILAAL 185 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TT---SHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCC---CHHHHHHHHHHHHHH
Confidence 8 4777777776 58999999999988 899999888777655
No 168
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.23 E-value=2.7 Score=47.56 Aligned_cols=103 Identities=21% Similarity=0.209 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA 211 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~ 211 (519)
..+..+.+-|++.|+..|..|++.+..|=- .+.-.. +++++.+++.++++.++..|+.++.++-.- .+..
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~~-----~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l 161 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELLGN-----IIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDL 161 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHHHH-----HHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhh
Confidence 347778888899999999998888866542 233332 578999999999999999999999999743 4667
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS 247 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS 247 (519)
+.+.|.+..+..++.+. ++.+..+|..+|..+-
T Consensus 162 ~~~~g~~~~l~~l~~D~---dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 162 YHELGLIDILKELVADS---DPIVIANALASLAEID 194 (757)
T ss_pred hhcccHHHHHHHHhhCC---CchHHHHHHHHHHHhc
Confidence 88889999999999888 8999999888887764
No 169
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.16 E-value=8.2 Score=43.32 Aligned_cols=92 Identities=14% Similarity=0.220 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhh
Q 010064 276 VSPQAKQDALRALYNLSIF-PSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPILV 351 (519)
Q Consensus 276 ~~~~~~~~A~~aL~nLs~~-~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv 351 (519)
.+.+-++.-+.+++..+.. ++ +.+.+|+.|+..|.|.. .....+..+...-. .|.-|..++. .|+
T Consensus 371 ~~~~yRqlLiktih~cav~Fp~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~------~l~ 439 (948)
T KOG1058|consen 371 DNGKYRQLLIKTIHACAVKFPE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE------KLL 439 (948)
T ss_pred cchHHHHHHHHHHHHHhhcChH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH------HHH
Confidence 4556688888888887753 32 33467889999997654 33344444443333 5666666655 344
Q ss_pred hhccCCCCHHHHHHHHHHHHHHhcCCh
Q 010064 352 DVLNWTDSPGCQEKASYVLMVMAHKSY 378 (519)
Q Consensus 352 ~lL~~s~~~~~qe~A~~~L~nL~~~~~ 378 (519)
+-+..-.+.++.+.|+|+++.-|....
T Consensus 440 ~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 440 ETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HhhhhhcccccchhHHHHHHHHHhhhH
Confidence 444322356788889999999887744
No 170
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.89 E-value=0.52 Score=30.41 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 010064 176 IPPLAGMLDFQLADSQISSLYALLNLGI 203 (519)
Q Consensus 176 i~~Lv~lL~s~~~~~~~~a~~aL~NLa~ 203 (519)
+|.++++++++++++|..|+++|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999875
No 171
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.79 E-value=11 Score=34.96 Aligned_cols=90 Identities=17% Similarity=0.084 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCC-HHHHHH
Q 010064 103 VSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGA-IPPLAG 181 (519)
Q Consensus 103 ~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~-i~~Lv~ 181 (519)
..+..++.++..+...-++- + ..+ ++.+...|.++++.+|..|+..|..|...+. .+. .|- +..++.
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~--v--e~~---~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-ik~----k~~l~~~~l~ 70 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNL--V--EPY---LPNLYKCLRDEDPLVRKTALLVLSHLILEDM-IKV----KGQLFSRILK 70 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHH--H--HhH---HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-eee----hhhhhHHHHH
Confidence 45666777776665433221 1 123 7888899999999999999999999886652 221 233 367778
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCC
Q 010064 182 MLDFQLADSQISSLYALLNLGIG 204 (519)
Q Consensus 182 lL~s~~~~~~~~a~~aL~NLa~~ 204 (519)
+|..++++++..|...+..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999874
No 172
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.77 E-value=7.3 Score=44.31 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHH
Q 010064 185 FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPF 264 (519)
Q Consensus 185 s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~ 264 (519)
.+.+.++-.+++.|..+... .+.+..+...+++...+..+++. ++-+.-+|+..+..|+.- -....+|.
T Consensus 738 d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~Lkde---dsyvyLnaI~gv~~Lcev-------y~e~il~d 806 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDE---DSYVYLNAIRGVVSLCEV-------YPEDILPD 806 (982)
T ss_pred CCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhccc---CceeeHHHHHHHHHHHHh-------cchhhHHH
Confidence 35566888899999999883 56677788889999999999998 777777777766665532 12334666
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCc--ccHHH
Q 010064 265 LVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTP--EGRKA 339 (519)
Q Consensus 265 LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~--e~r~~ 339 (519)
|..--.+......++.+...-.++.++..... ....-. .-.+...+..+.+++ ++..+++.|++|+.-. ..-..
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 66633221111113334444466666553322 111111 133444455555555 6888999999998721 12223
Q ss_pred HhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc---CcHHHHHHHhhcC-CHHHHHHHHHHHHHh
Q 010064 340 ISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEA---GIASALLELTLLG-STLAQKRASRILECL 415 (519)
Q Consensus 340 i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~---G~i~~Ll~Ll~~g-s~~~~~~A~~~L~~l 415 (519)
+.+ ++..++.+..-.+++.+++.|+-++..+-++....--.+..+ .....+..+.... +..++..|+..|..+
T Consensus 886 ~~e---v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 886 FHE---VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHH---HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 333 566677777656788999999999998888744322222221 2333344444433 344555555555444
Q ss_pred h
Q 010064 416 R 416 (519)
Q Consensus 416 ~ 416 (519)
.
T Consensus 963 ~ 963 (982)
T KOG4653|consen 963 Q 963 (982)
T ss_pred H
Confidence 3
No 173
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=89.09 E-value=44 Score=38.52 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=135.1
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHH--hcCcHH
Q 010064 143 SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIV--KAGAVH 219 (519)
Q Consensus 143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv--~aG~v~ 219 (519)
+..+..-..|.++|...+.....+...+-. .+...+..+.. ..+-++..|+.+++--+.. ..+. ..+++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~-----~vl~~~~p~ild 533 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKV-----KVLLSLQPMILD 533 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCc-----eeccccchHHHH
Confidence 344555557777777666443222222111 22333333332 4455677777777766621 1122 246778
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHH
Q 010064 220 KMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNIS 299 (519)
Q Consensus 220 ~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~ 299 (519)
.|+++.... +.++.....-+|......+.-.....++...|..+.++... ..++.+...+-.++-.|+...+|..
T Consensus 534 ~L~qlas~~---s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~--s~DP~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 534 GLLQLASKS---SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKY--SEDPQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred HHHHHcccc---cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHHHhhc
Confidence 888887665 56777766777777666665555555677889888877652 3677777777777777665333322
Q ss_pred HHHhcCcHHHHHHHcCC------HHHHHHHHHHHHHhcC-C-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064 300 FILETDLIRYLLEMLGD------MELSERILSILSNLVS-T-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM 371 (519)
Q Consensus 300 ~l~~~g~v~~Lv~lL~~------~~v~~~Al~~L~nLs~-~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~ 371 (519)
. ...-.+|.|++.|.. .....-++.+|.-+.. . +.--+.+.. -++|++.+..-|+++......+..||.
T Consensus 609 ~-m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 609 P-MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC--YAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred c-hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH--HHhHHhHhheeecCChHHHHhHHHHHH
Confidence 2 234578999999943 2356667777776665 2 233344444 388899888777888888888888888
Q ss_pred HHhcCC
Q 010064 372 VMAHKS 377 (519)
Q Consensus 372 nL~~~~ 377 (519)
.+...+
T Consensus 686 a~Is~~ 691 (1005)
T KOG2274|consen 686 ALISVT 691 (1005)
T ss_pred HHHhcC
Confidence 776543
No 174
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=88.97 E-value=1 Score=35.64 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH---HHHHHHHHHHHhcCCcccHHHHhh
Q 010064 281 KQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME---LSERILSILSNLVSTPEGRKAISR 342 (519)
Q Consensus 281 ~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~---v~~~Al~~L~nLs~~~e~r~~i~~ 342 (519)
.+.|+||+.|++..+.....+.+.++++.++++....+ ++--|..+|.-++.+.++.+.+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 56799999999998888888888899999999996543 777889999988989888887766
No 175
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=88.85 E-value=51 Score=38.11 Aligned_cols=234 Identities=21% Similarity=0.192 Sum_probs=129.6
Q ss_pred HhcchhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc----CCC----HHHHH
Q 010064 126 KKEEALEELKIVVKDLQS-----ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD----FQL----ADSQI 192 (519)
Q Consensus 126 ~~~g~~~~l~~Lv~~L~s-----~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~----s~~----~~~~~ 192 (519)
.+.|+ +..+++.|.+ ...+.-...+..|+..++- ..+|+.+.+.|+++.|+..|. .+. +++-+
T Consensus 114 ~~~gG---L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 114 AECGG---LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred hcCCC---HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 34566 4444444432 2333444456666667765 599999999999999998884 233 45555
Q ss_pred HHHHHHHHhcCCChhhHHHH------Hhc--------CcHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhccCCCChhhhh
Q 010064 193 SSLYALLNLGIGNDLNKAAI------VKA--------GAVHKMLKLIESPVA-PNPSVSEAIVANFLGLSALDSNKPIIG 257 (519)
Q Consensus 193 ~a~~aL~NLa~~~~~nk~~i------v~a--------G~v~~Lv~lL~s~~~-~~~~~~~~a~~aL~~LS~~~~~k~~I~ 257 (519)
..+.++--|... .+...+ ... ..+..|++.+.++.. .++.+....+.+|-+|+...+.+.
T Consensus 190 ~LL~IiE~ll~e--a~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m--- 264 (802)
T PF13764_consen 190 QLLEIIESLLSE--ANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM--- 264 (802)
T ss_pred HHHHHHHHHHHH--HhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH---
Confidence 555555555432 221111 111 237777777765421 257778888888888887654332
Q ss_pred hCCChHHHHHHhhcC------CCCCCHHHHHHHHHHHHHhcCCC-------ccHHHHHhcCcHHHHHHHcC---------
Q 010064 258 SSGAVPFLVKTLKNS------DKKVSPQAKQDALRALYNLSIFP-------SNISFILETDLIRYLLEMLG--------- 315 (519)
Q Consensus 258 ~~gai~~LV~lL~~~------~~~~~~~~~~~A~~aL~nLs~~~-------~n~~~l~~~g~v~~Lv~lL~--------- 315 (519)
..||+.+... +.....+- ...+.++..++.+- .-+..+++.|++...+..|.
T Consensus 265 -----~~Lv~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~ 338 (802)
T PF13764_consen 265 -----DALVEHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNT 338 (802)
T ss_pred -----HHHHHHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccC
Confidence 3333332221 11111111 12255555554321 14677889999998888771
Q ss_pred -CHHHH--------HHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCC-CCHHHHHHHHHHHHHHhcC
Q 010064 316 -DMELS--------ERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWT-DSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 316 -~~~v~--------~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~nL~~~ 376 (519)
++++. ..++.+|.-|+......+.++. ..++ .++..|... ....+=..|=-+|-.|+.+
T Consensus 339 ~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~~~-~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 339 DSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLLIA-EQLL-PLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred CCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHHHH-hhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 23333 3688999999985444444455 4566 444444322 2334444444445555543
No 176
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=88.66 E-value=32 Score=38.31 Aligned_cols=169 Identities=15% Similarity=0.095 Sum_probs=101.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh---cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM---LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~---~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
.+..+..-+.+.+--|+..||.+.++..-+-..+-. ...+..++..+. .++..+..++++|.|+..+ +-+++.+.
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~ 626 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFM 626 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHH
Confidence 334444556777888999999988775433333221 224555555554 6688899999999999995 77776665
Q ss_pred hc--CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcC-CCCCCHHHHHHHHHHH
Q 010064 214 KA--GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNS-DKKVSPQAKQDALRAL 288 (519)
Q Consensus 214 ~a--G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~-~~~~~~~~~~~A~~aL 288 (519)
.. -++..+++.-..+ +..++.+.+...+|+|.. ..+ .+.+..+.|..++... .+..+.++.-.++.||
T Consensus 627 s~~~~i~~~~~~~~s~~---~knl~ia~atlaln~sv~l~~~~----~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Al 699 (745)
T KOG0301|consen 627 SRLESILDPVIEASSLS---NKNLQIALATLALNYSVLLIQDN----EQLEGKEVLLSAISTLLEPVDDLEAIYRLLVAL 699 (745)
T ss_pred HHHHHHhhhhhhhhccc---chhHHHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 54 2222232222222 455555555455555532 111 1245566665555442 1224555677788999
Q ss_pred HHhcCCCccHHHHHhcCcHHHHHHHc
Q 010064 289 YNLSIFPSNISFILETDLIRYLLEML 314 (519)
Q Consensus 289 ~nLs~~~~n~~~l~~~g~v~~Lv~lL 314 (519)
.+|+..+.....+...--+..+..-+
T Consensus 700 gtL~t~~~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 700 GTLMTVDASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred HhhccccHHHHHHHHhcCHHHHHHHH
Confidence 99998888777777666666666655
No 177
>PRK14707 hypothetical protein; Provisional
Probab=88.52 E-value=28 Score=43.70 Aligned_cols=264 Identities=16% Similarity=0.156 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHH
Q 010064 144 ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKML 222 (519)
Q Consensus 144 ~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv 222 (519)
++.+.+..+......++.++ ..+..+-..|+...|=.+-+- +++.++..+...-.-|+.+ ..-+..+-..|+-..|-
T Consensus 177 ~~~~c~~aa~~la~~~~~~d-~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~q~va~~lN 254 (2710)
T PRK14707 177 DNPDCQAVAPRFAALVASDD-RLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKPQELGNALN 254 (2710)
T ss_pred CCchHHHHHHHHHHHhcCCh-hhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCChHHHHHHHH
Confidence 45566666666666777665 666666444444444333343 6677777776666666664 55565555567777777
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHH-hccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHH
Q 010064 223 KLIESPVAPNPSVSEAIVANFLG-LSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFI 301 (519)
Q Consensus 223 ~lL~s~~~~~~~~~~~a~~aL~~-LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l 301 (519)
.+.+-+ +......++.+|.. |+.+...+..+-..+.-..|-.+-+-. ....++..|...-..|...++.++.
T Consensus 255 ~lsKwp---~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwp---d~~vc~~Aa~~la~rl~~d~~l~~~- 327 (2710)
T PRK14707 255 ALSKWA---DTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWA---DLPVCAEAAIALAERLADDPELCKA- 327 (2710)
T ss_pred HHhcCC---CchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCC---CchHHHHHHHHHHHHHhccHhhhhc-
Confidence 777777 66666666666654 654444455443343333333333332 4555666666666777765554433
Q ss_pred HhcCcHHHHHHHc-C--CHHHHHH-HHHHHHHhcCCcccHHHHhhcCCcchhhhh-hccCCCCHHHHHHHHHHHHHHhcC
Q 010064 302 LETDLIRYLLEML-G--DMELSER-ILSILSNLVSTPEGRKAISRVPDAFPILVD-VLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 302 ~~~g~v~~Lv~lL-~--~~~v~~~-Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~-lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
++.-.+..+++-| + |..++.. |..+-.-|+.+++.++.+-. . ++...+. +-+|++++.|...|..+-..|..+
T Consensus 328 ~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~-q-~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d 405 (2710)
T PRK14707 328 LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP-Q-GVSSVLNALSKWPDTPVCAAAASALAEHVVDD 405 (2710)
T ss_pred cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch-h-HHHHHHhhhhcCCCchHHHHHHHHHHHHhccC
Confidence 2333344444444 2 3334444 44444456668888887765 2 4444444 457888888887777777777755
Q ss_pred ChhhHHHHHHcCcHHHHHHHhhcCCH-HHHHHHHHHHHHhhhcC
Q 010064 377 SYGDRQAMIEAGIASALLELTLLGST-LAQKRASRILECLRVDK 419 (519)
Q Consensus 377 ~~~~~~~i~~~G~i~~Ll~Ll~~gs~-~~~~~A~~~L~~l~~~~ 419 (519)
.+.++.+-..|+-..|=.|..=++. .....|..+=..+..|.
T Consensus 406 -~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~ 448 (2710)
T PRK14707 406 -LELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDT 448 (2710)
T ss_pred -hhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccH
Confidence 6777777777766666666554433 33444444444444443
No 178
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=88.15 E-value=8.8 Score=43.86 Aligned_cols=250 Identities=15% Similarity=0.103 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhh
Q 010064 147 EQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLI 225 (519)
Q Consensus 147 ~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL 225 (519)
+.+..++.-...++... ......+...-.+|.+-.++...+..++...+..+.++.--.+ +..-+. -.+|.++..+
T Consensus 370 e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~-~llp~~~~~l 446 (759)
T KOG0211|consen 370 EVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTIS-ELLPLLIGNL 446 (759)
T ss_pred hhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCcc-ccChhhhhhc
Confidence 34444444444444321 1222333334445555555556666666666666666553322 111111 2456677777
Q ss_pred cCCCCCCHHHHHHHHHHHHHhccCCC-ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 010064 226 ESPVAPNPSVSEAIVANFLGLSALDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET 304 (519)
Q Consensus 226 ~s~~~~~~~~~~~a~~aL~~LS~~~~-~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~ 304 (519)
++. .+.++.+....+..+-...+ .-....++-.+|.++.+-.. ....++...++.+..++.... ..++.+.
T Consensus 447 ~de---~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d----~~wRvr~ail~~ip~la~q~~-~~~~~~~ 518 (759)
T KOG0211|consen 447 KDE---DPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAED----LLWRVRLAILEYIPQLALQLG-VEFFDEK 518 (759)
T ss_pred chh---hHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccc----hhHHHHHHHHHHHHHHHHhhh-hHHhhHH
Confidence 777 78888877765544333222 23333455667777776544 456777778888777775443 2222222
Q ss_pred CcHHHHH-HHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH
Q 010064 305 DLIRYLL-EMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR 381 (519)
Q Consensus 305 g~v~~Lv-~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~ 381 (519)
...++ .-+.+. .+.+.|...|..++..-...... . ..++.++.+.. .++-..+...+..+.-|+ +-.-
T Consensus 519 --~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~-~--~~i~k~L~~~~-q~~y~~R~t~l~si~~la---~v~g 589 (759)
T KOG0211|consen 519 --LAELLRTWLPDHVYSIREAAARNLPALVETFGSEWAR-L--EEIPKLLAMDL-QDNYLVRMTTLFSIHELA---EVLG 589 (759)
T ss_pred --HHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhH-H--HhhHHHHHHhc-CcccchhhHHHHHHHHHH---HHhc
Confidence 22222 222222 48888888888887622211211 2 24555555554 223334444444444333 2223
Q ss_pred HHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 382 QAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 382 ~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
+.+...-.+|.+..+..+..+.+|-.+++.|..+.
T Consensus 590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 44556667899999999999999999999998887
No 179
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=87.98 E-value=4.1 Score=46.55 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=96.2
Q ss_pred HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064 209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALR 286 (519)
Q Consensus 209 k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~ 286 (519)
|++++. .++|.|++.+... ....+..-.-+|.+.-.+-+ ++.+.. ...+|.|++.|.- .+..++..++.
T Consensus 861 kQRfF~-~ivP~l~~~~~t~---~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~----~D~~v~vstl~ 931 (1030)
T KOG1967|consen 861 KQRFFC-DIVPILVSKFETA---PGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSM----PDVIVRVSTLR 931 (1030)
T ss_pred HHHHHH-hhHHHHHHHhccC---CccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCC----CccchhhhHhh
Confidence 344433 4899999988854 34444444445555433322 344432 5667888888876 68888899999
Q ss_pred HHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH-----HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCH
Q 010064 287 ALYNLSIFPSNISFILETDLIRYLLEMLGDME-----LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSP 360 (519)
Q Consensus 287 aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~-----v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~ 360 (519)
++.-+..-.......--.-.||.|+.+-.+++ +++-|+.+|..|.. .|-..-.-.. +.++..|...|. +...
T Consensus 932 ~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~Ld-DkKR 1009 (1030)
T KOG1967|consen 932 TIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILD-DKKR 1009 (1030)
T ss_pred hhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccC-cHHH
Confidence 88877654332222112345677776664433 78999999999998 5443333333 568889999998 5567
Q ss_pred HHHHHHHHH
Q 010064 361 GCQEKASYV 369 (519)
Q Consensus 361 ~~qe~A~~~ 369 (519)
.++++|+.+
T Consensus 1010 lVR~eAv~t 1018 (1030)
T KOG1967|consen 1010 LVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHH
Confidence 788888755
No 180
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.85 E-value=4.4 Score=45.60 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=105.8
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCC
Q 010064 181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSG 260 (519)
Q Consensus 181 ~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~g 260 (519)
.+|.+.++.+..+++.+.+.+|-.+ ++ ..++.+|+++|.++ ..++.-.+..+..++... +..
T Consensus 294 pLl~S~n~sVVmA~aql~y~lAP~~-~~------~~i~kaLvrLLrs~----~~vqyvvL~nIa~~s~~~--~~l----- 355 (968)
T KOG1060|consen 294 PLLQSRNPSVVMAVAQLFYHLAPKN-QV------TKIAKALVRLLRSN----REVQYVVLQNIATISIKR--PTL----- 355 (968)
T ss_pred HHHhcCCcHHHHHHHhHHHhhCCHH-HH------HHHHHHHHHHHhcC----CcchhhhHHHHHHHHhcc--hhh-----
Confidence 3556788999999999999999742 21 23589999999986 677777767777776431 111
Q ss_pred ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHH
Q 010064 261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRK 338 (519)
Q Consensus 261 ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~ 338 (519)
+-|.+-...-. ..+..+++..=+..|.||+... |+..+ ++-|...+.+++ +...++.+|+..+.. ..
T Consensus 356 F~P~lKsFfv~--ssDp~~vk~lKleiLs~La~es-ni~~I-----LrE~q~YI~s~d~~faa~aV~AiGrCA~~---~~ 424 (968)
T KOG1060|consen 356 FEPHLKSFFVR--SSDPTQVKILKLEILSNLANES-NISEI-----LRELQTYIKSSDRSFAAAAVKAIGRCASR---IG 424 (968)
T ss_pred hhhhhhceEee--cCCHHHHHHHHHHHHHHHhhhc-cHHHH-----HHHHHHHHhcCchhHHHHHHHHHHHHHHh---hC
Confidence 23444443322 1256667777778888887543 33222 334444554444 666777777765541 12
Q ss_pred HHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh
Q 010064 339 AISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG 379 (519)
Q Consensus 339 ~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~ 379 (519)
.+.+ .++..|+.+|. +.+..+..+++..+-.|.+..+.
T Consensus 425 sv~~--tCL~gLv~Lls-shde~Vv~eaV~vIk~Llq~~p~ 462 (968)
T KOG1060|consen 425 SVTD--TCLNGLVQLLS-SHDELVVAEAVVVIKRLLQKDPA 462 (968)
T ss_pred chhh--HHHHHHHHHHh-cccchhHHHHHHHHHHHHhhChH
Confidence 2333 47788899998 45777777788888888776553
No 181
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=87.75 E-value=29 Score=33.87 Aligned_cols=204 Identities=14% Similarity=0.111 Sum_probs=115.6
Q ss_pred HHHHHH-hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChh
Q 010064 176 IPPLAG-MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKP 254 (519)
Q Consensus 176 i~~Lv~-lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~ 254 (519)
++.|+. .-+..++..+...+++|..++.++..+... ++..|..+...+ +......+...+..+-... .+.
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~---~~~~~~~~~rLl~~lw~~~-~r~ 72 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQG---SLELRYVALRLLTLLWKAN-DRH 72 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCC---chhHHHHHHHHHHHHHHhC-chH
Confidence 344544 445688999999999999999963122222 456666666666 4555444444444443322 221
Q ss_pred hhhhCCChHHHHHH-----hhc-CCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc-CCH--HHHHHHHH
Q 010064 255 IIGSSGAVPFLVKT-----LKN-SDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML-GDM--ELSERILS 325 (519)
Q Consensus 255 ~I~~~gai~~LV~l-----L~~-~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL-~~~--~v~~~Al~ 325 (519)
. +.+..++.. ... .......+.......+++.++....+ .-...++.+..+| ++. .++..++.
T Consensus 73 f----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 73 F----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred H----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 1 223322222 000 01234555666667788888876554 2224566777777 433 27778888
Q ss_pred HHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH-HHHHHcCcHHHHHHHhhcCC
Q 010064 326 ILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR-QAMIEAGIASALLELTLLGS 401 (519)
Q Consensus 326 ~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~-~~i~~~G~i~~Ll~Ll~~gs 401 (519)
.|..|+ ...+++....|..+..-|.....|.+...-+..+..+.++.-+.. -......++..|.++....+
T Consensus 145 ~l~~Lc-----~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 145 ALAPLC-----EAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHH-----HHhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 888887 344444445666676666645567777666666665555433322 23345566666666666544
No 182
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=87.56 E-value=0.51 Score=49.92 Aligned_cols=99 Identities=21% Similarity=0.172 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHH----HHHhcCcHHHHHHHcC---CHHHHHHHHHHHHHhcCCcccHHH--HhhcCCc
Q 010064 276 VSPQAKQDALRALYNLSIFPSNIS----FILETDLIRYLLEMLG---DMELSERILSILSNLVSTPEGRKA--ISRVPDA 346 (519)
Q Consensus 276 ~~~~~~~~A~~aL~nLs~~~~n~~----~l~~~g~v~~Lv~lL~---~~~v~~~Al~~L~nLs~~~e~r~~--i~~~~g~ 346 (519)
...+++.+|+.+|.|+...-+... ..+..+.+..++.-.. ..+++.+||.+++||..++..+-+ =.. +.+
T Consensus 496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA-~~~ 574 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWA-SQA 574 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCch-HHH
Confidence 456788888888888864322111 1122233333332221 234889999999999987654221 123 457
Q ss_pred chhhhhhccCCCCHHHHHHHHHHHHHHhc
Q 010064 347 FPILVDVLNWTDSPGCQEKASYVLMVMAH 375 (519)
Q Consensus 347 i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~ 375 (519)
++.|..++....|-+++..|+.+|..-..
T Consensus 575 F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 575 FNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 88999998877889999999998876554
No 183
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.79 E-value=3 Score=40.14 Aligned_cols=146 Identities=16% Similarity=0.090 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCChhhH-HHHHhcCcHHH
Q 010064 147 EQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-----QLADSQISSLYALLNLGIGNDLNK-AAIVKAGAVHK 220 (519)
Q Consensus 147 ~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-----~~~~~~~~a~~aL~NLa~~~~~nk-~~iv~aG~v~~ 220 (519)
...+.|+..|.-++.+ ++.|..+.+.-+--.|..+|.. .-+-++..++..+..|..++++.- ..+....+||.
T Consensus 115 nRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 3457788888888855 6899888876655455555532 334588899999999998755554 44455789999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--------CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 221 MLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--------SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 221 Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--------~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
+++++..+ ++..+..++-++-.+-.++..-..|.+ ...+..++.-+-+. ++......++++-.+|+
T Consensus 194 cLrIme~g---SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~---~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 194 CLRIMELG---SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSL---GSTRLLKHAIRCYLRLS 267 (315)
T ss_pred HHHHHHhh---hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHheeec
Confidence 99999998 555555555555445555554444332 11222333323222 56666666777666666
Q ss_pred CCCccHH
Q 010064 293 IFPSNIS 299 (519)
Q Consensus 293 ~~~~n~~ 299 (519)
..+..+.
T Consensus 268 d~p~aR~ 274 (315)
T COG5209 268 DKPHARA 274 (315)
T ss_pred CCHhHHH
Confidence 6655443
No 184
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=86.27 E-value=6.5 Score=44.77 Aligned_cols=181 Identities=15% Similarity=0.105 Sum_probs=119.8
Q ss_pred HHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChH--HHHHHhhcCCC
Q 010064 197 ALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVP--FLVKTLKNSDK 274 (519)
Q Consensus 197 aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~--~LV~lL~~~~~ 274 (519)
+|+++...++++-+.+++.|++..+..+++.-. +.+.+..+.+.+.+++.-.+.+....-...+. ..-.++..-
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~--~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w-- 569 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFD--NEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW-- 569 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence 788999999999999999999999999998652 67888899999999987766655443322222 222233331
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcC-CcccHH-HHhhcCCcchh-hh
Q 010064 275 KVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVS-TPEGRK-AISRVPDAFPI-LV 351 (519)
Q Consensus 275 ~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~-~~e~r~-~i~~~~g~i~~-Lv 351 (519)
...+.--.|+..|+.+..+.+. .. .......+...+..... .+.... .+.+ ..+.. +.
T Consensus 570 -~~~ersY~~~siLa~ll~~~~~---~~-------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~--~~f~~~~~ 630 (699)
T KOG3665|consen 570 -DSIERSYNAASILALLLSDSEK---TT-------------ECVFRNSVNELLVEAISRWLTSEIRVIND--RSFFPRIL 630 (699)
T ss_pred -chhhHHHHHHHHHHHHHhCCCc---Cc-------------cccchHHHHHHHHHHhhccCccceeehhh--hhcchhHH
Confidence 3336777788888877665433 00 11122233333332222 222222 2223 23333 66
Q ss_pred hhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcC
Q 010064 352 DVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG 400 (519)
Q Consensus 352 ~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~g 400 (519)
.++..+..+..+-.|+|++.++++..+++++.+.+.|+++.+..+-...
T Consensus 631 ~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (699)
T KOG3665|consen 631 RILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLS 679 (699)
T ss_pred HHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhH
Confidence 6666567788999999999999999888999999999999887765543
No 185
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=86.24 E-value=8.8 Score=43.98 Aligned_cols=148 Identities=17% Similarity=0.152 Sum_probs=97.8
Q ss_pred CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCC--HHHHHHHHHHHHHhcC-Cc
Q 010064 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGD--MELSERILSILSNLVS-TP 334 (519)
Q Consensus 259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~ 334 (519)
...+|.|++.+.. .+...+..-+.+|.++..+-.-...+-+. ..+|-|++.|+- ..++..++.++.-+.. .+
T Consensus 866 ~~ivP~l~~~~~t----~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 866 CDIVPILVSKFET----APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HhhHHHHHHHhcc----CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 4678999988875 56677888888998887754432222232 456667777754 4466777777766654 34
Q ss_pred ccHHHHhhcCCcchhhhhhccCCCC--HHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064 335 EGRKAISRVPDAFPILVDVLNWTDS--PGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL 412 (519)
Q Consensus 335 e~r~~i~~~~g~i~~Lv~lL~~s~~--~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L 412 (519)
.-...-+++ .+|.++.+=...++ ..+++.|..+|..|+..-+-..-.-.+..++.+|...+.+..-.+|+.|...=
T Consensus 942 tL~t~~~~T--lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 942 TLQTEHLST--LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred ccchHHHhH--HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 344444443 77777777663333 57889999999999984333332333455677888888887777888877653
No 186
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.07 E-value=1.5 Score=28.16 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=25.5
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 389 IASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 389 ~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
++|.+++++.++++.+|..|...|..+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999998864
No 187
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.37 E-value=15 Score=41.34 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLN 200 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~N 200 (519)
++.+.+.|.+.+.-+|.+|.-+|..+-+... ..+ .++-+.+-.+|. ..++.++.+|...|..
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~ 198 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAPELIESFLLTEQDPSCKRNAFLMLFT 198 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChHHHHHHHHHhccCchhHHHHHHHHHh
Confidence 5666678888888899988887777665421 111 112233334443 3556666666555543
No 188
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.31 E-value=74 Score=37.11 Aligned_cols=256 Identities=13% Similarity=0.109 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHhc---cChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHH
Q 010064 146 EEQRREAASKVRSLAK---ENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKML 222 (519)
Q Consensus 146 ~~~~~~Aa~~L~~La~---~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv 222 (519)
.-.+.-|+..+..|+. .+..++..+ +.=.++.++..++++..-++..|+|.+..++.-+=.+...+ ..++....
T Consensus 432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~ 508 (1010)
T KOG1991|consen 432 PRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTH 508 (1010)
T ss_pred hhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHH
Confidence 3445567777766552 233455444 33356677778888999999999999999993222222222 23566667
Q ss_pred Hhhc-CCCCCCHHHHHHHHHHHHHh-ccCCCChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccH
Q 010064 223 KLIE-SPVAPNPSVSEAIVANFLGL-SALDSNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNI 298 (519)
Q Consensus 223 ~lL~-s~~~~~~~~~~~a~~aL~~L-S~~~~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~ 298 (519)
.+|. +. +..++-.|+-+|..+ +..+.++..+.. .+.+..|+.+.+. .+.+........+. +..++..
T Consensus 509 ~~l~~d~---~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne----~End~Lt~vme~iV--~~fseEl 579 (1010)
T KOG1991|consen 509 NCLLNDN---ELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE----VENDDLTNVMEKIV--CKFSEEL 579 (1010)
T ss_pred HHhccCC---cCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh----cchhHHHHHHHHHH--HHHHHhh
Confidence 7777 44 577777777777654 444445555533 3444455555554 33333333333321 1111111
Q ss_pred HHH---HhcCcHHHHHHHcCC--------HHHHHHHHHHHHHhcC---CcccHHHHhh-c-CCcchhhhhhccCCCCHHH
Q 010064 299 SFI---LETDLIRYLLEMLGD--------MELSERILSILSNLVS---TPEGRKAISR-V-PDAFPILVDVLNWTDSPGC 362 (519)
Q Consensus 299 ~~l---~~~g~v~~Lv~lL~~--------~~v~~~Al~~L~nLs~---~~e~r~~i~~-~-~g~i~~Lv~lL~~s~~~~~ 362 (519)
..+ +.........+++.+ .+=+..|.++|.-+.. +-+....+.. - +-+++.+-.+|. ++-.+.
T Consensus 580 sPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~-~~i~df 658 (1010)
T KOG1991|consen 580 SPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILK-NDITDF 658 (1010)
T ss_pred chhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence 111 112333344444421 1122234444443332 2222222221 0 124455555565 455677
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 363 QEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 363 qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
-+++..++.+++..+++-.-.|+ |..+.+.+.+......--....-+|.|+.
T Consensus 659 yeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~v 710 (1010)
T KOG1991|consen 659 YEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYV 710 (1010)
T ss_pred HHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhhe
Confidence 78888888888876543322333 24556666666655555556666677665
No 189
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.03 E-value=39 Score=38.92 Aligned_cols=122 Identities=22% Similarity=0.223 Sum_probs=84.1
Q ss_pred HHHHHhcCcHHHHHHHcC----------CHHHHHHHHHHHHHhcCCcccHHHHhhc-------CCcchhhhhhccCC---
Q 010064 298 ISFILETDLIRYLLEMLG----------DMELSERILSILSNLVSTPEGRKAISRV-------PDAFPILVDVLNWT--- 357 (519)
Q Consensus 298 ~~~l~~~g~v~~Lv~lL~----------~~~v~~~Al~~L~nLs~~~e~r~~i~~~-------~g~i~~Lv~lL~~s--- 357 (519)
...++..+++..++.+.. -.++...|+.+|.-+...|..+.++... ..+|..|+..-..+
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 344566677777777662 1347788999999988899999887631 23566666554311
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhH-----------------------------------HHHHHcCcHHHHHHHhhcCC-
Q 010064 358 DSPGCQEKASYVLMVMAHKSYGDR-----------------------------------QAMIEAGIASALLELTLLGS- 401 (519)
Q Consensus 358 ~~~~~qe~A~~~L~nL~~~~~~~~-----------------------------------~~i~~~G~i~~Ll~Ll~~gs- 401 (519)
.+|+++..|..++.|+...++.++ ..+....+|..|+.|+....
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP 753 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence 378999999999999877653221 12233678999999998543
Q ss_pred ----HHHHHHHHHHHHHhhhcC
Q 010064 402 ----TLAQKRASRILECLRVDK 419 (519)
Q Consensus 402 ----~~~~~~A~~~L~~l~~~~ 419 (519)
..++.-|+++|--|+.++
T Consensus 754 ~t~aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLARDD 775 (1516)
T ss_pred CCcHHHHHHHHHHHHhccccCc
Confidence 356777888887777554
No 190
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=84.93 E-value=3.2 Score=39.94 Aligned_cols=104 Identities=21% Similarity=0.148 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccC----CCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcHHHH
Q 010064 319 LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNW----TDSPGCQEKASYVLMVMAHKSY-GDRQAMIEAGIASAL 393 (519)
Q Consensus 319 v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~----s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~G~i~~L 393 (519)
-...|+.+|-.++++|+.++.+.+ ....--|...|.- +..+.++-.+.+++..|..... ....-+....+||-+
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 345788899999999999999988 4554444455531 1234677788999999998644 446667789999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhh-hcCCCcc
Q 010064 394 LELTLLGSTLAQKRASRILECLR-VDKGKQV 423 (519)
Q Consensus 394 l~Ll~~gs~~~~~~A~~~L~~l~-~~~~~~~ 423 (519)
+.+...|+...|.-|..+++.+- +|.+-+.
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqY 225 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQY 225 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHH
Confidence 99999999999999999999887 5544444
No 191
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=84.74 E-value=28 Score=35.95 Aligned_cols=160 Identities=11% Similarity=0.137 Sum_probs=119.2
Q ss_pred hhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-c-----HHHHHhc--CcHHHHHHHcCCHHHHHHHHHHH
Q 010064 256 IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-N-----ISFILET--DLIRYLLEMLGDMELSERILSIL 327 (519)
Q Consensus 256 I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n-----~~~l~~~--g~v~~Lv~lL~~~~v~~~Al~~L 327 (519)
+.+.+.+..|+..|.. -+.+.+.+++....++..... . ...+... .++..|+.--+.+++.-.+-.+|
T Consensus 72 i~~~dll~~Li~~L~~----L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~ml 147 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPK----LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDML 147 (335)
T ss_dssp HHHHTHHHHHHHTGGG----S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhh----CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHH
Confidence 3467889999999888 699999999999999987642 2 2223322 35555555556778888888899
Q ss_pred HHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc---CcHHHHHHHhhcCCHHH
Q 010064 328 SNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEA---GIASALLELTLLGSTLA 404 (519)
Q Consensus 328 ~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~---G~i~~Ll~Ll~~gs~~~ 404 (519)
+....++...+.+.. ...+..+.+.+. ..+-++...|..++-.|-..........+.. ..+...-.|+.+++...
T Consensus 148 Rec~k~e~l~~~iL~-~~~f~~ff~~~~-~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 148 RECIKHESLAKIILY-SECFWKFFKYVQ-LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHTTSHHHHHHHHT-SGGGGGHHHHTT-SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHhhHHHHHHHhC-cHHHHHHHHHhc-CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 998888887788877 678888999998 6788999999888887655545555555543 45678888999999999
Q ss_pred HHHHHHHHHHhhhcCCC
Q 010064 405 QKRASRILECLRVDKGK 421 (519)
Q Consensus 405 ~~~A~~~L~~l~~~~~~ 421 (519)
|.++.++|.-|-.|+..
T Consensus 226 krqslkLL~ellldr~n 242 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSN 242 (335)
T ss_dssp HHHHHHHHHHHHHSGGG
T ss_pred ehhhHHHHHHHHHchhH
Confidence 99999999999877543
No 192
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=84.66 E-value=31 Score=39.60 Aligned_cols=253 Identities=15% Similarity=0.154 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHh
Q 010064 145 SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKL 224 (519)
Q Consensus 145 ~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~l 224 (519)
++.++..++.-+.++++.-. ......++++.++.++..+...+++.|...+.++..-.+..- =+..-..+.+++.
T Consensus 250 ~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~ 324 (759)
T KOG0211|consen 250 TPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQA 324 (759)
T ss_pred chhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHH
Confidence 34455555555555553321 134456677888888877778888888887777764211110 1122366788888
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc--cHHHHH
Q 010064 225 IESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS--NISFIL 302 (519)
Q Consensus 225 L~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~--n~~~l~ 302 (519)
..++ +..++.......+.|...=. +......-+++...++.. .....+...+.-..-++..-. ....+.
T Consensus 325 ~~d~---~~~v~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~~l~~~----~~~e~r~a~a~~~~~l~~~l~~~~~~~i~ 395 (759)
T KOG0211|consen 325 VEDG---SWRVSYMVADKFSELSSAVG--PSATRTQLVPPVSNLLKD----EEWEVRYAIAKKVQKLACYLNASCYPNIP 395 (759)
T ss_pred hcCh---hHHHHHHHhhhhhhHHHHhc--cccCcccchhhHHHHhcc----hhhhhhHHhhcchHHHhhhcCcccccccc
Confidence 8877 66666665555555543211 122233445666666654 233333333333333333221 233344
Q ss_pred hcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh
Q 010064 303 ETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG 379 (519)
Q Consensus 303 ~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~ 379 (519)
....++.+-.+..+.. +....+....+++- .+ +..-+ .-..+.+...++ ...+.++..-.+.+..+-.....
T Consensus 396 ~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti--~~llp~~~~~l~-de~~~V~lnli~~ls~~~~v~~v 470 (759)
T KOG0211|consen 396 DSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI--SELLPLLIGNLK-DEDPIVRLNLIDKLSLLEEVNDV 470 (759)
T ss_pred hhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc--cccChhhhhhcc-hhhHHHHHhhHHHHHHHHhccCc
Confidence 4455666666655443 44444444444433 21 11111 224455555555 45666666666555444333222
Q ss_pred hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 380 DRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 380 ~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
........-.+|.+.++.....-+++....+-+..+.
T Consensus 471 ~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la 507 (759)
T KOG0211|consen 471 IGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA 507 (759)
T ss_pred ccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH
Confidence 2222333344555555554444444444444444444
No 193
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=84.66 E-value=35 Score=38.92 Aligned_cols=200 Identities=14% Similarity=0.025 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCc-HHHHHHh
Q 010064 147 EQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGA-VHKMLKL 224 (519)
Q Consensus 147 ~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~-v~~Lv~l 224 (519)
..++.+. .|.+++.+++++...+.+.|++..+...++. ...+++..+...|.|++...+.........-+ ...+-.+
T Consensus 487 ~~~~~~~-~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~ 565 (699)
T KOG3665|consen 487 DDVLEFT-ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVL 565 (699)
T ss_pred hHHHHHH-HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 3344444 7778888889999999999999999999986 67889999999999999863333222222211 1233333
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc--cHHHHH
Q 010064 225 IESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS--NISFIL 302 (519)
Q Consensus 225 L~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~--n~~~l~ 302 (519)
+..- . +.+..-.++++|..+..+.+. ....+.- ..+...-..+..++..... ......
T Consensus 566 ~~~w-~-~~ersY~~~siLa~ll~~~~~---~~~~~~r---------------~~~~~~l~e~i~~~~~~~~~~~~~~~f 625 (699)
T KOG3665|consen 566 LNKW-D-SIERSYNAASILALLLSDSEK---TTECVFR---------------NSVNELLVEAISRWLTSEIRVINDRSF 625 (699)
T ss_pred Hhhc-c-hhhHHHHHHHHHHHHHhCCCc---Cccccch---------------HHHHHHHHHHhhccCccceeehhhhhc
Confidence 3222 1 346777788888877665443 1111111 1112222222222222211 111111
Q ss_pred hcCcHHHHHHHcCCHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHH
Q 010064 303 ETDLIRYLLEMLGDMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYV 369 (519)
Q Consensus 303 ~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~ 369 (519)
..+ +..++..-..+..+--|++++.|+.. .+++++.+.. .+++..+.++-..+....+++.+...
T Consensus 626 ~~~-~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 626 FPR-ILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRE-SNGFELIENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred chh-HHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHh-ccchhhhhhcchhHHHHHHHHHHHHH
Confidence 122 33344333455577788888888888 6666666666 67777777765533333344444333
No 194
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.37 E-value=60 Score=35.97 Aligned_cols=171 Identities=18% Similarity=0.149 Sum_probs=92.0
Q ss_pred cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC-
Q 010064 217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI- 293 (519)
Q Consensus 217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~- 293 (519)
++..+.+.+++. .....+ ++.++..+... .+... .+..+..++.+........++..|+-++++|..
T Consensus 358 a~~~i~~~i~~~---~~~~~e-a~~~~~~~~~~~~~Pt~~------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~ 427 (574)
T smart00638 358 ALKFIKQWIKNK---KITPLE-AAQLLAVLPHTARYPTEE------ILKALFELAESPEVQKQPYLRESALLAYGSLVRR 427 (574)
T ss_pred HHHHHHHHHHcC---CCCHHH-HHHHHHHHHHhhhcCCHH------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence 577777788876 322222 22222222211 12222 356666777653223455677777777766643
Q ss_pred ---CCccHHHHHhcCcHHHHHHHcC------CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhcc--CCCCHHH
Q 010064 294 ---FPSNISFILETDLIRYLLEMLG------DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLN--WTDSPGC 362 (519)
Q Consensus 294 ---~~~n~~~l~~~g~v~~Lv~lL~------~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~--~s~~~~~ 362 (519)
..+.....+-...++.|...|. +.+-....+.+|+|+... ..+..|..++. ...++.+
T Consensus 428 ~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~-----------~~i~~l~~~l~~~~~~~~~i 496 (574)
T smart00638 428 YCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP-----------SSIKVLEPYLEGAEPLSTFI 496 (574)
T ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh-----------hHHHHHHHhcCCCCCCCHHH
Confidence 2222212233446666766663 223445678888887641 22233333333 2235689
Q ss_pred HHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 363 QEKASYVLMVMAH-KSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 363 qe~A~~~L~nL~~-~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
+..|+++|..++. .+.. +.+.|+.++.+.+.....|.+..+.++.-
T Consensus 497 R~~Av~Alr~~a~~~p~~---------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 497 RLAAILALRNLAKRDPRK---------VQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHHHHhCchH---------HHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 9999999998874 3333 45667888887655444555555555553
No 195
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=83.62 E-value=5.4 Score=39.50 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=93.4
Q ss_pred hHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcC--cHHHHHHHc------CCHHHHHHHHHHHHHhcCC
Q 010064 262 VPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETD--LIRYLLEML------GDMELSERILSILSNLVST 333 (519)
Q Consensus 262 i~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g--~v~~Lv~lL------~~~~v~~~Al~~L~nLs~~ 333 (519)
+..+.+++.. .+.+.+-.++..++-+..++.....+...+ ....+..++ ..+..+.-++++|+||-.+
T Consensus 65 ~~~~~~~~~~----Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~ 140 (268)
T PF08324_consen 65 LILLLKILLS----WPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH 140 (268)
T ss_dssp HHHHHHHHCC----S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHh----CCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC
Confidence 4455555544 344557778888887777776555554432 233444433 2344788899999999999
Q ss_pred cccHHHHhhcCC-cchhhhhhccCCC---CHHHHHHHHHHHHHHhcCChhhH-HHHHHcCcHHHHHHHhh--cCCHHHHH
Q 010064 334 PEGRKAISRVPD-AFPILVDVLNWTD---SPGCQEKASYVLMVMAHKSYGDR-QAMIEAGIASALLELTL--LGSTLAQK 406 (519)
Q Consensus 334 ~e~r~~i~~~~g-~i~~Lv~lL~~s~---~~~~qe~A~~~L~nL~~~~~~~~-~~i~~~G~i~~Ll~Ll~--~gs~~~~~ 406 (519)
+.++..+....+ .+...+..+..+. +..++..++.++.|++..-...+ ..=.+..++..+.+.+. ..++++.-
T Consensus 141 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~ 220 (268)
T PF08324_consen 141 PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALY 220 (268)
T ss_dssp CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHH
T ss_pred CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHH
Confidence 999999888544 3333333333122 57788889999999976322111 11111223455555333 26899999
Q ss_pred HHHHHHHHhh
Q 010064 407 RASRILECLR 416 (519)
Q Consensus 407 ~A~~~L~~l~ 416 (519)
|+..+|.+|.
T Consensus 221 R~LvAlGtL~ 230 (268)
T PF08324_consen 221 RLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999999
No 196
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.47 E-value=32 Score=40.65 Aligned_cols=221 Identities=16% Similarity=0.142 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCh-hhHHHHHhcCcHH
Q 010064 143 SESEEQRREAASKVRSLAKENSETRVTLAM--LGAIPPLAGMLDFQLADSQISSLYALLNLGIGND-LNKAAIVKAGAVH 219 (519)
Q Consensus 143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~--~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~-~nk~~iv~aG~v~ 219 (519)
+.+..+|..+-+.|..++.. +........ ..+...|..-+++-+..++...+.+|..|-...+ ++...+.+. +..
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~-I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL-IPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHH
Confidence 34677889999999998865 222222211 1233444444455455556555555555554322 334333322 344
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHhcc----CCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC
Q 010064 220 KMLKLIESPVAPNPSVSEAIVANFLGLSA----LDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP 295 (519)
Q Consensus 220 ~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~----~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~ 295 (519)
.++.+ +.. +...++.+-..|..+.. .++.... ....|...+.++..+...........-+-++..+..
T Consensus 743 vIL~~-Ke~---n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~-- 814 (1176)
T KOG1248|consen 743 VILSL-KEV---NVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ-- 814 (1176)
T ss_pred HHHhc-ccc---cHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--
Confidence 44444 665 77888888777766652 1111110 122455555555442100122222111333333322
Q ss_pred ccHHHHHhcCcHHHHHH----Hc--CCHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHH
Q 010064 296 SNISFILETDLIRYLLE----ML--GDMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASY 368 (519)
Q Consensus 296 ~n~~~l~~~g~v~~Lv~----lL--~~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~ 368 (519)
+...+++.+.++.+++ .| +.+++...|+..+.-++. .|+.+-.--. +..++.+..+++ ..+..++..+-.
T Consensus 815 -e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~-d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 815 -EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSH-DHKIKVRKKVRL 891 (1176)
T ss_pred -HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHH-hhhHHHHHHHHH
Confidence 1122333444444444 34 456799999999998887 5554433322 247777777766 556777777777
Q ss_pred HHHHHhcC
Q 010064 369 VLMVMAHK 376 (519)
Q Consensus 369 ~L~nL~~~ 376 (519)
+|-.|+..
T Consensus 892 LlekLirk 899 (1176)
T KOG1248|consen 892 LLEKLIRK 899 (1176)
T ss_pred HHHHHHHH
Confidence 77777654
No 197
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.90 E-value=10 Score=37.50 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=103.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcC--cHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhccCCCCh
Q 010064 177 PPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAG--AVHKMLKLIESPVA-PNPSVSEAIVANFLGLSALDSNK 253 (519)
Q Consensus 177 ~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG--~v~~Lv~lL~s~~~-~~~~~~~~a~~aL~~LS~~~~~k 253 (519)
..+...+..=.++-+.-++-.++-++.+ +..-..+...+ +...+..++..... ..+..+-.++.++.|+-.++..+
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 3344444332223345566666666663 44444443332 24444444433321 15777888999999999998888
Q ss_pred hhhhhC-C-ChHHHHHHhhcCCCCC---CHHHHHHHHHHHHHhcCCCc-cH-HHHHhcCcHHHHHHHc----CCHHHHHH
Q 010064 254 PIIGSS-G-AVPFLVKTLKNSDKKV---SPQAKQDALRALYNLSIFPS-NI-SFILETDLIRYLLEML----GDMELSER 322 (519)
Q Consensus 254 ~~I~~~-g-ai~~LV~lL~~~~~~~---~~~~~~~A~~aL~nLs~~~~-n~-~~l~~~g~v~~Lv~lL----~~~~v~~~ 322 (519)
..+.+. + .+-..+..+.. .. +..++..++..++|++..-. +. ..-.....+..++..+ .|+++...
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~---~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLS---SLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCT---TS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhh---ccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 887763 2 33333333332 12 67889999999999975321 11 0001112344444433 47789999
Q ss_pred HHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHH
Q 010064 323 ILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKAS 367 (519)
Q Consensus 323 Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~ 367 (519)
++.+|++|...+.........-++-..+-..-.....+.+++.+.
T Consensus 222 ~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 999999999866655555552233333333332234566665543
No 198
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.51 E-value=56 Score=35.22 Aligned_cols=152 Identities=16% Similarity=0.043 Sum_probs=90.4
Q ss_pred hcCCHHHHHHhhc----CCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 172 MLGAIPPLAGMLD----FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS 247 (519)
Q Consensus 172 ~~G~i~~Lv~lL~----s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS 247 (519)
+.|.+.-++..+. +++...+..|+..|.|.+.+ -+.|..-...-.+..++.-|.++. +.++...+...|.-++
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~-~P~kv~th~~~~ldaii~gL~D~~--~~~V~leam~~Lt~v~ 328 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG-APDKVRTHKTTQLDAIIRGLYDDL--NEEVQLEAMKCLTMVL 328 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc-CcHHHHHhHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHH
Confidence 3466655555543 36778899999999999997 344444444456777777665542 5777777777776655
Q ss_pred cCCCChhhhhhCCChH---HHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc--cHHHHHh--cCcHHHHHHHcCCHH-H
Q 010064 248 ALDSNKPIIGSSGAVP---FLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS--NISFILE--TDLIRYLLEMLGDME-L 319 (519)
Q Consensus 248 ~~~~~k~~I~~~gai~---~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~--n~~~l~~--~g~v~~Lv~lL~~~~-v 319 (519)
....++. ...+.++ .+..++.+ .+++.+..|..++..|+.... -...+.+ .+...+|+-.|.|+. .
T Consensus 329 ~~~~~~~--l~~~~l~ialrlR~l~~s----e~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~ 402 (533)
T KOG2032|consen 329 EKASNDD--LESYLLNIALRLRTLFDS----EDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY 402 (533)
T ss_pred Hhhhhcc--hhhhchhHHHHHHHHHHh----cChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH
Confidence 4433333 2333444 34456666 688999999888888876443 3333443 133334444444443 3
Q ss_pred HHHHHHHHHHhcC
Q 010064 320 SERILSILSNLVS 332 (519)
Q Consensus 320 ~~~Al~~L~nLs~ 332 (519)
...||....-.+.
T Consensus 403 va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 403 VARACRSELRTCY 415 (533)
T ss_pred HHHHHHHHHHhcC
Confidence 4455555544443
No 199
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=82.12 E-value=80 Score=34.17 Aligned_cols=265 Identities=16% Similarity=0.116 Sum_probs=131.6
Q ss_pred HHHHHHHh-cCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHH
Q 010064 134 LKIVVKDL-QSE-SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKA 210 (519)
Q Consensus 134 l~~Lv~~L-~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~ 210 (519)
+-.+.+.| ..+ ..+.|..+...+..+.+.... +....+ ..++..+.. ..++.-..-+.+|..|+.+ .++-
T Consensus 29 iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~-~~~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~-Grdi- 101 (464)
T PF11864_consen 29 IWYAAKDLIDPNQPSEARRAALELLIACIKRQDS-SSGLMR----AEFFRDISDPSNDDDFDLRLEALIALTDN-GRDI- 101 (464)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccc-ccHHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcC-CcCc-
Confidence 33444444 322 456788888888887766422 111111 122333332 3333233445555555553 3333
Q ss_pred HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hhhh-hh----CCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064 211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KPII-GS----SGAVPFLVKTLKNSDKKVSPQAKQDA 284 (519)
Q Consensus 211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~~I-~~----~gai~~LV~lL~~~~~~~~~~~~~~A 284 (519)
..++.++.|.|...|..- ......+-.....-+..+.. ...+ .+ ...+.+++.+++-....-+.......
T Consensus 102 ~~~~~~i~~~L~~wl~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~l 177 (464)
T PF11864_consen 102 DFFEYEIGPFLLSWLEPS----YQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSL 177 (464)
T ss_pred hhcccchHHHHHHHHHHH----HHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 447888999999888643 11111111111111111111 0000 01 22344455555443222344444445
Q ss_pred HHHHHHhcCCCccHH------H----HHhcCc-----HHHHHHHc----CCHHHHHHHHHHHHHhcCCcccHHHHhhcCC
Q 010064 285 LRALYNLSIFPSNIS------F----ILETDL-----IRYLLEML----GDMELSERILSILSNLVSTPEGRKAISRVPD 345 (519)
Q Consensus 285 ~~aL~nLs~~~~n~~------~----l~~~g~-----v~~Lv~lL----~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g 345 (519)
+..+..+|..+.+.. . ++..|. ++.++..| +..++...+-.++.||+.+.-+..
T Consensus 178 v~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~------- 250 (464)
T PF11864_consen 178 VDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHS------- 250 (464)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHH-------
Confidence 555555543332111 1 222232 22333333 444677788888999987554433
Q ss_pred cchhhhhhccC-----CCCHHHHHHHHHHHHHHhcCChhhHH-HHHHc--CcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 346 AFPILVDVLNW-----TDSPGCQEKASYVLMVMAHKSYGDRQ-AMIEA--GIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 346 ~i~~Lv~lL~~-----s~~~~~qe~A~~~L~nL~~~~~~~~~-~i~~~--G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
++..|.++|.. ..+..+..-|+.++..+..+..+.+- .+--. -++|.|...+..+++.+--....++..+-
T Consensus 251 ~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 251 AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 34467777721 13455667888888888877533222 22122 37888888888887777666666666665
No 200
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.91 E-value=52 Score=37.09 Aligned_cols=113 Identities=19% Similarity=0.160 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
+..+++...+.+..+|-..+..|..+.....+.-+.+ -.+....+..=|...-+.++..|+.+|..+-.. +.+-
T Consensus 87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~v-fn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-~~de---- 160 (892)
T KOG2025|consen 87 FYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDV-FNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD-PKDE---- 160 (892)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC-CCCC----
Confidence 6677777777888899999999999886443333322 345566666666667788999999999999842 2211
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhh
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIG 257 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~ 257 (519)
+..++..+..++++.+ +++++.++ |.+++.++...+.|+
T Consensus 161 e~~v~n~l~~liqnDp--S~EVRRaa---LsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDP--SDEVRRAA---LSNISVDNSTLPCIV 199 (892)
T ss_pred cccHHHHHHHHHhcCC--cHHHHHHH---HHhhccCcccchhHH
Confidence 2346788889998863 78888854 778887777777665
No 201
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=81.78 E-value=45 Score=38.47 Aligned_cols=157 Identities=15% Similarity=0.082 Sum_probs=101.8
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC
Q 010064 173 LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN 252 (519)
Q Consensus 173 ~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~ 252 (519)
.+++..|.++....+.++......+|+..+.- +.-.....+.-+.|.++.+.-..++ ++.+...+--++..|+....+
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~-DP~V~~~~qd~f~el~q~~~~ 606 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFLKYSE-DPQVASLAQDLFEELLQIAAN 606 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHh
Confidence 34566777777667788888888888888885 4445556667788888775432222 677777776677777765555
Q ss_pred hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHc---CCHHHHHHHHHHHH
Q 010064 253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEML---GDMELSERILSILS 328 (519)
Q Consensus 253 k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL---~~~~v~~~Al~~L~ 328 (519)
...+ +.-.||.||+.|.............-|+..|.-+..+.. -....+-.-++|++.++. +|..+...+-.||+
T Consensus 607 ~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 607 YGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred hcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHH
Confidence 4444 345799999999874211224555666677776666544 345555566778887776 34556666666666
Q ss_pred HhcC
Q 010064 329 NLVS 332 (519)
Q Consensus 329 nLs~ 332 (519)
.+..
T Consensus 686 a~Is 689 (1005)
T KOG2274|consen 686 ALIS 689 (1005)
T ss_pred HHHh
Confidence 6655
No 202
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.43 E-value=44 Score=37.75 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=63.5
Q ss_pred CcHHHHHHHc-C--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH
Q 010064 305 DLIRYLLEML-G--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR 381 (519)
Q Consensus 305 g~v~~Lv~lL-~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~ 381 (519)
++|+.|+..- . +.+++..|+.+|+-++..+ +..++..+++|..+.||.++-.++.+|..-|.+. +.+
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~d---------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~ 623 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD---------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLK 623 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecC---------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcH
Confidence 5667777663 3 3568888888888666521 3456677888877789999999999999988873 434
Q ss_pred HHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 382 QAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 382 ~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
.+ |..|-.|..+...-+|+-|+.+++.+-
T Consensus 624 eA------i~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 624 EA------INLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred HH------HHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 32 223333444555556666666666554
No 203
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=81.42 E-value=14 Score=33.70 Aligned_cols=132 Identities=18% Similarity=0.106 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhccChhhHHHHH-hcCCHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDL-QSESEEQRREAASKVRSLAKENSETRVTLA-MLGAIPPL 179 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L-~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~-~~G~i~~L 179 (519)
...+..++..+..+- +..++.. .+.+...+..+ ..++.+....++.++..|--..++.-..+. ..|+++.+
T Consensus 19 ~~~r~~a~v~l~k~l--~~~~~~~-----~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 19 EEVRSHALVILSKLL--DAAREEF-----KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp CCHHHHHHHHHHHHH--HHHHHHH-----HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred HhHHHHHHHHHHHHH--HHhHHHH-----HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 344555555554441 3333322 23344555433 334445778888888887766666555554 57889999
Q ss_pred HHhhc--CCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHH-HHHHHHHHHH
Q 010064 180 AGMLD--FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPS-VSEAIVANFL 244 (519)
Q Consensus 180 v~lL~--s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~-~~~~a~~aL~ 244 (519)
+.++. +.+..++..++.+|..=|. ++..+..|.+. +++.|-+..+... +.. ++..|+-.|.
T Consensus 92 ~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~-~~~~L~~~~~~~~--~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 92 LPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKN-YVSWLKELYKNSK--DDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHH-CHHHHHHHTTTCC---HH-CHHHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHH-HHHHHHHHHcccc--chHHHHHHHHHHHh
Confidence 99998 7889999999999888777 36666666665 7899999996541 344 5666555554
No 204
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=81.30 E-value=39 Score=39.66 Aligned_cols=149 Identities=14% Similarity=0.137 Sum_probs=89.4
Q ss_pred CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc---CCHHHHHHHHHHHHHhcCCccc
Q 010064 260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML---GDMELSERILSILSNLVSTPEG 336 (519)
Q Consensus 260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL---~~~~v~~~Al~~L~nLs~~~e~ 336 (519)
+++..|...++. .+..++-.|+..+..++...+ .-+...+|...+.++ .++..=-.+|-+|+.|+.-.=-
T Consensus 341 ~vie~Lls~l~d----~dt~VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 341 FVIEHLLSALSD----TDTVVRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHhccC----CcchhhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc
Confidence 345555555555 799999999999999987654 223334455555555 3333334788888888862111
Q ss_pred HHHHhhcCCcchhhhhhccC-------CCCHHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064 337 RKAISRVPDAFPILVDVLNW-------TDSPGCQEKASYVLMVMAHKSYG-DRQAMIEAGIASALLELTLLGSTLAQKRA 408 (519)
Q Consensus 337 r~~i~~~~g~i~~Lv~lL~~-------s~~~~~qe~A~~~L~nL~~~~~~-~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A 408 (519)
...... .+++.++.-|.. +....+++.||++++.+++..+. .-+.+.+.=.-..|+.-+.+..-..|..|
T Consensus 414 lps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 414 LPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred chHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHH
Confidence 111111 356666665542 12356899999999999987332 12222221111223334446677889889
Q ss_pred HHHHHHhhh
Q 010064 409 SRILECLRV 417 (519)
Q Consensus 409 ~~~L~~l~~ 417 (519)
..+++-...
T Consensus 492 sAAlqE~VG 500 (1133)
T KOG1943|consen 492 SAALQENVG 500 (1133)
T ss_pred HHHHHHHhc
Confidence 999887764
No 205
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=81.12 E-value=59 Score=36.02 Aligned_cols=213 Identities=18% Similarity=0.147 Sum_probs=108.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--cChhhHHHHHhcCC---HHHHHHhhcCCCH---HHHHHHHHHHHHhc
Q 010064 131 LEELKIVVKDLQSESEEQRREAASKVRSLAK--ENSETRVTLAMLGA---IPPLAGMLDFQLA---DSQISSLYALLNLG 202 (519)
Q Consensus 131 ~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~--~~~~~r~~l~~~G~---i~~Lv~lL~s~~~---~~~~~a~~aL~NLa 202 (519)
...+-.|++.|..-+.+.-......+.. .. .-.-+.+.+...|- +..+.+++.++.. +.......++..+.
T Consensus 310 ~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~ 388 (574)
T smart00638 310 AAKFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Confidence 3446677777776665554444444443 11 11234555555564 4555555655432 22222222222222
Q ss_pred CCChhhHHHHHhcCcHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhc---c-CCCChhhhhhCCChHHHHHHhhcCCCCCC
Q 010064 203 IGNDLNKAAIVKAGAVHKMLKLIESPVA-PNPSVSEAIVANFLGLS---A-LDSNKPIIGSSGAVPFLVKTLKNSDKKVS 277 (519)
Q Consensus 203 ~~~~~nk~~iv~aG~v~~Lv~lL~s~~~-~~~~~~~~a~~aL~~LS---~-~~~~k~~I~~~gai~~LV~lL~~~~~~~~ 277 (519)
..+++ .+..|..+++++.. .+..+...++-++.++. + +.+..........++.|...|.......+
T Consensus 389 ~Pt~~---------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 459 (574)
T smart00638 389 YPTEE---------ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD 459 (574)
T ss_pred cCCHH---------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC
Confidence 22222 45677777776422 13455665555554443 2 22221112224467777776654211245
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC-----CHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhh
Q 010064 278 PQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG-----DMELSERILSILSNLVS-TPEGRKAISRVPDAFPILV 351 (519)
Q Consensus 278 ~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~-----~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv 351 (519)
..-+..++.+|.|+.... .+..|..++. +..++..|+++|..++. .++ . +-+.|+
T Consensus 460 ~~~~~~~LkaLGN~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~---~------v~~~l~ 520 (574)
T smart00638 460 EEEIQLYLKALGNAGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR---K------VQEVLL 520 (574)
T ss_pred chheeeHHHhhhccCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch---H------HHHHHH
Confidence 566788899999886433 2233333342 23488999999998875 322 1 222444
Q ss_pred hhcc-CCCCHHHHHHHHHHHHH
Q 010064 352 DVLN-WTDSPGCQEKASYVLMV 372 (519)
Q Consensus 352 ~lL~-~s~~~~~qe~A~~~L~n 372 (519)
.+.. ...+++++-.|+.+|+.
T Consensus 521 ~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 521 PIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHcCCCCChHHHHHHHHHHHh
Confidence 4443 24567788777666654
No 206
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.71 E-value=6.7 Score=43.10 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGI 203 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~ 203 (519)
+.+..++.+...++..+|..|++.|-.+|+++++.-..+ +..|+++|.++++.-...+-.+|..|..
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLK 125 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 447778888888899999999999999998876666655 5699999999887766666667766654
No 207
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=79.51 E-value=34 Score=34.50 Aligned_cols=111 Identities=13% Similarity=0.072 Sum_probs=78.2
Q ss_pred CCHHHHH-HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-
Q 010064 174 GAIPPLA-GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS- 251 (519)
Q Consensus 174 G~i~~Lv-~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~- 251 (519)
+.+..|+ .-+++.++.+++.|+.+|+-.+.-+.+... ..++.+...++.+ +..++..|+.+++-+.....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~---~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD---DEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHcCc
Confidence 3455554 677889999999999999999986442221 1367788888776 78999999988887653211
Q ss_pred -Ch-------hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 010064 252 -NK-------PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS 296 (519)
Q Consensus 252 -~k-------~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~ 296 (519)
.- ........+..+.+.+.+ .+++++..|+..++.|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDS----ENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhcCC
Confidence 11 112234567778888887 588899999999998865543
No 208
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=78.56 E-value=14 Score=36.68 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=71.4
Q ss_pred HhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 010064 126 KKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGI 203 (519)
Q Consensus 126 ~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~ 203 (519)
+..|.-+.+-.+++-|..++.--|.+++-++..|-... .||.|.+.|.. ..+.++..|+.||+.++.
T Consensus 181 Rn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 181 RNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred hccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence 34566677888888887777777888888887765332 67888887754 788999999999999986
Q ss_pred CChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 204 GNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGL 246 (519)
Q Consensus 204 ~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L 246 (519)
++ .++.|.+.+.++ ..-+++.+.-+|--+
T Consensus 250 --e~---------~~~vL~e~~~D~---~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 250 --ED---------CVEVLKEYLGDE---ERVVRESCEVALDML 278 (289)
T ss_pred --HH---------HHHHHHHHcCCc---HHHHHHHHHHHHHHH
Confidence 33 567888888887 667777776655443
No 209
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=77.66 E-value=27 Score=39.02 Aligned_cols=250 Identities=16% Similarity=0.205 Sum_probs=142.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--ChhhHHHHHh
Q 010064 137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIG--NDLNKAAIVK 214 (519)
Q Consensus 137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~--~~~nk~~iv~ 214 (519)
.+..|.-.+.+.|..=...|.. .....-+.++..-+++.|+..+..++ .-...+..|+.+... .++ ..
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~---~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e-----yq 328 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLID---RLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE-----YQ 328 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc-----cc
Confidence 3344445555555444433333 11123333444456677776665554 111222222222221 112 66
Q ss_pred cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC
Q 010064 215 AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF 294 (519)
Q Consensus 215 aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~ 294 (519)
.+++|.|+++.+.+ +..++-..+.-+-... +..-..+.+...+|.+..-+.. .++.++...+.++.-|+..
T Consensus 329 ~~i~p~l~kLF~~~---Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~D----Tn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSP---DRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLD----TNATLREQTLKSMAVLAPK 399 (690)
T ss_pred cchhhhHHHHhcCc---chHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhccc----CCHHHHHHHHHHHHHHHhh
Confidence 78999999999998 7777764433333222 1233445677788998888887 7999999999999888643
Q ss_pred CccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCC--cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064 295 PSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVST--PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL 370 (519)
Q Consensus 295 ~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~--~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L 370 (519)
-..+ .+....+..|-.+-.|. .++.+..-||+.++.+ +..|+.+ .+.++..-+. +.-+.-+..+++.+
T Consensus 400 L~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~v-----L~~aftralk-dpf~paR~a~v~~l 471 (690)
T KOG1243|consen 400 LSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRV-----LASAFTRALK-DPFVPARKAGVLAL 471 (690)
T ss_pred hchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccc-----cchhhhhhhc-CCCCCchhhhhHHH
Confidence 2211 22233444444444432 3888888888887763 2223322 2233444444 23344667777777
Q ss_pred HHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 371 MVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 371 ~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
+....- ....+ +...++|.+.-+..+....++..|..++..+-
T Consensus 472 ~at~~~-~~~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 472 AATQEY-FDQSE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred hhcccc-cchhh--hhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 765543 22111 22346788888888888888888888877665
No 210
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.49 E-value=1.3e+02 Score=35.81 Aligned_cols=181 Identities=20% Similarity=0.246 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC----------CCHHHHHHHHHHHHHh---cC-CChhhHHH---
Q 010064 149 RREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF----------QLADSQISSLYALLNL---GI-GNDLNKAA--- 211 (519)
Q Consensus 149 ~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s----------~~~~~~~~a~~aL~NL---a~-~~~~nk~~--- 211 (519)
++....++..+...+...+..+.+.|+...|...|-. .+..+-..-...|+.+ +. .+..|+..
T Consensus 749 lcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklht 828 (2799)
T KOG1788|consen 749 LCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHT 828 (2799)
T ss_pred HHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheee
Confidence 4445566666666666788889999999998887731 2222223333333332 21 13444433
Q ss_pred ----------HHhcC---------cHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhccC-----------CCChhhhhhCC
Q 010064 212 ----------IVKAG---------AVHKMLKL-IESPVAPNPSVSEAIVANFLGLSAL-----------DSNKPIIGSSG 260 (519)
Q Consensus 212 ----------iv~aG---------~v~~Lv~l-L~s~~~~~~~~~~~a~~aL~~LS~~-----------~~~k~~I~~~g 260 (519)
+.+.| .|..|.++ ++.-..|....-..|+..++.+-.+ .+.+..|-..|
T Consensus 829 vITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynag 908 (2799)
T KOG1788|consen 829 VITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAG 908 (2799)
T ss_pred eeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccc
Confidence 22334 22222221 1110000222223444555544311 12367778899
Q ss_pred ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHc-----CCHHHHHHHHHHHHHhcCC
Q 010064 261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEML-----GDMELSERILSILSNLVST 333 (519)
Q Consensus 261 ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL-----~~~~v~~~Al~~L~nLs~~ 333 (519)
++..|+..+-. ..++.+..-+..|-.++..++ |...+-..|++..|+.++ ++.++...++.++.-|+..
T Consensus 909 avRvlirslLl----nypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvemLgay 983 (2799)
T KOG1788|consen 909 AVRVLIRSLLL----NYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAY 983 (2799)
T ss_pred hhHHHHHHHHh----hChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhc
Confidence 99999998776 588899999999999998665 777777779999999887 3445666677776666653
No 211
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.34 E-value=64 Score=36.38 Aligned_cols=145 Identities=22% Similarity=0.171 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCC
Q 010064 150 REAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPV 229 (519)
Q Consensus 150 ~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~ 229 (519)
.-++..+..|-..+.+.- + -.|.+..|+...++++-.++..++.+|.-+.-.+.+ .-.-+-.+....|..-+.+.
T Consensus 64 ~fla~fv~sl~q~d~e~D--l-V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Dr- 138 (892)
T KOG2025|consen 64 SFLARFVESLPQLDKEED--L-VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDR- 138 (892)
T ss_pred HHHHHHHHhhhccCchhh--H-HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhcc-
Confidence 335555555553332221 2 235566666666778899999999998888763222 22233345666666666665
Q ss_pred CCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHh-----c
Q 010064 230 APNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILE-----T 304 (519)
Q Consensus 230 ~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~-----~ 304 (519)
-+.++..|+-+|..+-.++.. -+..++..++.++++. .+++++..| |.||+-++...+.+++ .
T Consensus 139 --ep~VRiqAv~aLsrlQ~d~~d----ee~~v~n~l~~liqnD---pS~EVRRaa---LsnI~vdnsTlp~IveRarDV~ 206 (892)
T KOG2025|consen 139 --EPNVRIQAVLALSRLQGDPKD----EECPVVNLLKDLIQND---PSDEVRRAA---LSNISVDNSTLPCIVERARDVS 206 (892)
T ss_pred --CchHHHHHHHHHHHHhcCCCC----CcccHHHHHHHHHhcC---CcHHHHHHH---HHhhccCcccchhHHHHhhhhh
Confidence 589999999999888644322 1234678899999986 788888865 5677777776777665 2
Q ss_pred CcHHHHH
Q 010064 305 DLIRYLL 311 (519)
Q Consensus 305 g~v~~Lv 311 (519)
++++.|+
T Consensus 207 ~anRrlv 213 (892)
T KOG2025|consen 207 GANRRLV 213 (892)
T ss_pred HHHHHHH
Confidence 5666654
No 212
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=77.19 E-value=13 Score=33.28 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=63.0
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcC
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKE-NSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGI 203 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~-~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~ 203 (519)
+..+.++.|.+.|.++|+.++..|+..|-.+.+. .......++..+++..|+.++.. .++.++..++..+.+-+.
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4455688999999999999999999999998876 35677888889999999999974 677888888888887764
No 213
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.54 E-value=17 Score=32.04 Aligned_cols=76 Identities=12% Similarity=0.033 Sum_probs=62.5
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHhcCC
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKENS-ETRVTLAMLGAIPPLAGMLDF---QLADSQISSLYALLNLGIG 204 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~-~~r~~l~~~G~i~~Lv~lL~s---~~~~~~~~a~~aL~NLa~~ 204 (519)
+..+.++.|-+.|+++++.++..|+..|-.+.+.-. .+...+....++..|+.++.. .++.++..++..+.+.+..
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 445568899999999999999999999999987753 477777777888889999975 4778999999888887753
No 214
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=76.17 E-value=6.8 Score=32.43 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
.++..+..|.++.+.+|-.++..|++|..... ....-..+++..+...|+++++=+-..|...|..|+...+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----- 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----- 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----
Confidence 47788888999999999999999999887654 11111245677888888999999999999999999975322
Q ss_pred HhcCcHHHHHHhhcC
Q 010064 213 VKAGAVHKMLKLIES 227 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s 227 (519)
.+++.|++...+
T Consensus 77 ---~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 ---EVLPILLDEYAD 88 (92)
T ss_pred ---HHHHHHHHHHhC
Confidence 255666665444
No 215
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=75.82 E-value=15 Score=33.05 Aligned_cols=75 Identities=12% Similarity=0.033 Sum_probs=62.9
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcC
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGI 203 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~ 203 (519)
+..+.++.|.+.|.+.|+.++..|+..|-.+.+.- ..+...++...++..|+.++.. .++.++...+..+...+.
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 33455888999999999999999999999988764 3677778888999999999987 788899999988888764
No 216
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=75.76 E-value=25 Score=39.34 Aligned_cols=172 Identities=22% Similarity=0.169 Sum_probs=92.3
Q ss_pred cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC--CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC-
Q 010064 217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD--SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI- 293 (519)
Q Consensus 217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~--~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~- 293 (519)
++..+.+++.+. ...-.+ +...|..|.... +... .+..+..++.......+..+...|+-+++.|..
T Consensus 396 av~~i~~~I~~~---~~~~~e-a~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~ 465 (618)
T PF01347_consen 396 AVKFIKDLIKSK---KLTDDE-AAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHK 465 (618)
T ss_dssp HHHHHHHHHHTT----S-HHH-HHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHH-HHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCc
Confidence 577788888886 333333 444555554432 2222 345555555431011456677777777766642
Q ss_pred ---CC------ccHHHHHhcCcHHHHHHHcC------CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCC-
Q 010064 294 ---FP------SNISFILETDLIRYLLEMLG------DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWT- 357 (519)
Q Consensus 294 ---~~------~n~~~l~~~g~v~~Lv~lL~------~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s- 357 (519)
.. ......+....++.|...|. +.+-...++.+|+|+-. +..++.|..++...
T Consensus 466 ~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~ 534 (618)
T PF01347_consen 466 YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKE 534 (618)
T ss_dssp HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS
T ss_pred eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhcc
Confidence 21 11122233456667766663 23466678999999853 23555666666522
Q ss_pred -CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 358 -DSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 358 -~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
.+..++-.|+++|..++...++ -+.+.|+.++.+.+.....|.+..+.++.-
T Consensus 535 ~~~~~~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 535 EVPHFIRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp -S-HHHHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 2567888999999988655432 145667888887655555555555666654
No 217
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.51 E-value=2.1e+02 Score=35.31 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=76.9
Q ss_pred HHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh--hhHHHHHhcCCHHHHHHhh
Q 010064 106 SEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENS--ETRVTLAMLGAIPPLAGML 183 (519)
Q Consensus 106 ~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~--~~r~~l~~~G~i~~Lv~lL 183 (519)
.++...+++.-..|+-. +++.-..+.++.|+..|.+..+-+|+.++-+|..|....+ +..+.+.+ ....++...
T Consensus 1015 q~aM~sIW~~Li~D~k~--~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvm 1090 (1702)
T KOG0915|consen 1015 QDAMTSIWNALITDSKK--VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVM 1090 (1702)
T ss_pred HHHHHHHHHHhccChHH--HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHH
Confidence 34556677653333211 1233445668899999999899999999999999887642 33333321 334444444
Q ss_pred cCCCHHHHHHH---HHHHHHhcCCC--hh--hHHHHHhcCcHHHHHH--hhcCCCCCCHHHHHHHHHHHHHhccC
Q 010064 184 DFQLADSQISS---LYALLNLGIGN--DL--NKAAIVKAGAVHKMLK--LIESPVAPNPSVSEAIVANFLGLSAL 249 (519)
Q Consensus 184 ~s~~~~~~~~a---~~aL~NLa~~~--~~--nk~~iv~aG~v~~Lv~--lL~s~~~~~~~~~~~a~~aL~~LS~~ 249 (519)
+.=.+.++++| +.+|..|++.. .. .+..-+-+-++|.|+. ++ +. -.+++..++.++..|+..
T Consensus 1091 DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~---v~evr~~si~tl~dl~Ks 1161 (1702)
T KOG0915|consen 1091 DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SK---VNEVRRFSIGTLMDLAKS 1161 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cc---hHHHHHHHHHHHHHHHHh
Confidence 33234455554 55555555321 11 1222222336666665 33 33 467777777777777644
No 218
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.38 E-value=17 Score=42.39 Aligned_cols=214 Identities=18% Similarity=0.164 Sum_probs=121.0
Q ss_pred HHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCC
Q 010064 194 SLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSD 273 (519)
Q Consensus 194 a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~ 273 (519)
+.-+|..|...+.+|...+.++.++..++.++-+. +-+...+.++..|-..++.+ +...-+-.||.+|+++.
T Consensus 662 gwDcLisllKnnteNqklFreanGvklilpflind-----ehRSslLrivscLitvdpkq---vhhqelmalVdtLksgm 733 (2799)
T KOG1788|consen 662 GWDCLISLLKNNTENQKLFREANGVKLILPFLIND-----EHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGM 733 (2799)
T ss_pred hHHHHHHHHhccchhhHHHHhhcCceEEEEeeech-----HHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcc
Confidence 35577788888999999999999988888888543 55555555565554333221 12234567788887741
Q ss_pred ----CCCC----HHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC----------CHH--HHHHHHHHHHH---
Q 010064 274 ----KKVS----PQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG----------DME--LSERILSILSN--- 329 (519)
Q Consensus 274 ----~~~~----~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~----------~~~--v~~~Al~~L~n--- 329 (519)
+... .....+...+|+.+...+. .+..+-+++++..|+..|- ..+ +-.+-..+|-.
T Consensus 734 vt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfT 813 (2799)
T KOG1788|consen 734 VTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFT 813 (2799)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHH
Confidence 1112 2345566777888775443 5666778888888887761 111 11122222222
Q ss_pred hc--CCcccHHHHhhcCCcchhhhhhccCCC-----------------------CHHH--HHHHHHHHHHHhc-------
Q 010064 330 LV--STPEGRKAISRVPDAFPILVDVLNWTD-----------------------SPGC--QEKASYVLMVMAH------- 375 (519)
Q Consensus 330 Ls--~~~e~r~~i~~~~g~i~~Lv~lL~~s~-----------------------~~~~--qe~A~~~L~nL~~------- 375 (519)
++ .++.++..+.. .=.+..+.++|..++ .|.+ ...||..+..+-.
T Consensus 814 lavcenasNrmklht-vITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavnt 892 (2799)
T KOG1788|consen 814 LAVCENASNRMKLHT-VITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNT 892 (2799)
T ss_pred HHHhhcchhhhheee-eeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeecc
Confidence 22 24444443321 111222222221111 1111 1223333332211
Q ss_pred --C-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 376 --K-SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 376 --~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
+ .....+.+...|++..|+..+....|+.|-.-..+|.-+.
T Consensus 893 PsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSla 936 (2799)
T KOG1788|consen 893 PSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLA 936 (2799)
T ss_pred CCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 0 0123678899999999999999999999988777777666
No 219
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.23 E-value=75 Score=36.30 Aligned_cols=168 Identities=15% Similarity=0.196 Sum_probs=86.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhh
Q 010064 177 PPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPII 256 (519)
Q Consensus 177 ~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I 256 (519)
.-|..||++.....+..|..-+.++-...... ...+|..++...+. +.+++..+-- .|....+.++-+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVask---n~EVKkLVyv---YLlrYAEeqpdL 105 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASK---NIEVKKLVYV---YLLRYAEEQPDL 105 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhcc---CHHHHHHHHH---HHHHHhhcCCCc
Confidence 45677888766665555555444444321221 12457777777777 7777775532 233222222211
Q ss_pred hhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-C
Q 010064 257 GSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-T 333 (519)
Q Consensus 257 ~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~ 333 (519)
.---|..+-+.|.. .++-++..|+++|..+=. .++.-=++-.+-....|+. ++..|..++-.|=+ .
T Consensus 106 -ALLSIntfQk~L~D----pN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd 174 (968)
T KOG1060|consen 106 -ALLSINTFQKALKD----PNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD 174 (968)
T ss_pred -eeeeHHHHHhhhcC----CcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC
Confidence 11124455555655 577777777777654311 1110000111112223332 66667777777755 6
Q ss_pred cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064 334 PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA 374 (519)
Q Consensus 334 ~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~ 374 (519)
++.+.++++ .+-.+|. ..+|.+...|+.+.-..|
T Consensus 175 ~e~k~qL~e------~I~~LLa-D~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 175 PEQKDQLEE------VIKKLLA-DRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred hhhHHHHHH------HHHHHhc-CCCCcchhHHHHHHHHhc
Confidence 666665554 3444555 456777777776666665
No 220
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=73.86 E-value=50 Score=38.28 Aligned_cols=181 Identities=12% Similarity=0.099 Sum_probs=111.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCChhhHHHHHh
Q 010064 136 IVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIGNDLNKAAIVK 214 (519)
Q Consensus 136 ~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~ 214 (519)
.+-..+.+.++..+.+|+..+-....+.. ........|.+-.++.... ..+..+...++..|..|+......-.. ..
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~ 334 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YA 334 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HH
Confidence 34445678899999999988888775542 1121122344445554443 356778888888888888764444211 12
Q ss_pred cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC
Q 010064 215 AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF 294 (519)
Q Consensus 215 aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~ 294 (519)
.++.|.|+..+... ...+++.+..++-...... .-....+.+...+.. .+++.+..+...|......
T Consensus 335 ~~v~p~lld~lkek---k~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~----knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEK---KSELRDALLKALDAILNST------PLSKMSEAILEALKG----KNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred HhhcchHHHHhhhc---cHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcC----CChhhHHHHHHHHHHHHhh
Confidence 36788999988887 6788887776665544311 113345667777777 7889888887777766544
Q ss_pred Cc--cHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhc
Q 010064 295 PS--NISFILETDLIRYLLEMLGDM--ELSERILSILSNLV 331 (519)
Q Consensus 295 ~~--n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs 331 (519)
.+ ....---.+.++.++...+|. +++..|+.++.-+-
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 33 222222235667777777554 47776666665543
No 221
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.83 E-value=26 Score=35.54 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=93.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
+...+..|.+.+++.++.++..|+.|+.-.++...... .-+|..++.=+++....+-..|+.++..+... .|. .+.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~--ln~-~i~ 165 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSS--LNN-SID 165 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH--HHH-HHH
Confidence 67788889999999999999999999876544333221 23667777777888888889999999988862 222 222
Q ss_pred hcCcHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 214 KAGAVHKMLKLI-ESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 214 ~aG~v~~Lv~lL-~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
+ .+..++..| ......+--+++.|-.+|-.+..+... .-+++.|+..++. .++.++..++.+..|..
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~----~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQH----SNPRVRAKAALCFSRCV 233 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhh----hchhhhhhhhccccccc
Confidence 2 334444433 222111456788888888887755322 1245666666665 57777777777665543
No 222
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.54 E-value=1.9e+02 Score=33.92 Aligned_cols=244 Identities=13% Similarity=0.071 Sum_probs=127.0
Q ss_pred CChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHH
Q 010064 117 EGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLADSQISSL 195 (519)
Q Consensus 117 ~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~ 195 (519)
.....+..+ +... +..++..++++-.-.|..||+.++.++..+ .+..-.-..+++.....|. +..-.++..|+
T Consensus 451 K~s~~~~~m-E~fl---v~hVfP~f~s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAa 524 (1010)
T KOG1991|consen 451 KKSPYKSQM-EYFL---VNHVFPEFQSPYGYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAA 524 (1010)
T ss_pred cCCchHHHH-HHHH---HHHhhHhhcCchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHH
Confidence 444444444 2233 556666677777788999999999999543 2222222335666777776 56678999999
Q ss_pred HHHHHhcCCChhhHHHHHhc--CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCChhhhhhCCChHHHHHHhhc-
Q 010064 196 YALLNLGIGNDLNKAAIVKA--GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSNKPIIGSSGAVPFLVKTLKN- 271 (519)
Q Consensus 196 ~aL~NLa~~~~~nk~~iv~a--G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~k~~I~~~gai~~LV~lL~~- 271 (519)
-||.-+-.+.+.++..+-.. +.++.|+.+.+.-. +..+....=..+...+.. .+....+.++ ......+++..
T Consensus 525 lALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E--nd~Lt~vme~iV~~fseElsPfA~eL~q~-La~~F~k~l~~~ 601 (1010)
T KOG1991|consen 525 LALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE--NDDLTNVMEKIVCKFSEELSPFAVELCQN-LAETFLKVLQTS 601 (1010)
T ss_pred HHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHhhchhHHHHHHH-HHHHHHHHHhcc
Confidence 99999999766666655443 45556666655431 222221111122222211 0111111111 12223333432
Q ss_pred -CCCCCCHHHHHHHHHHHHHhcC---CCccHHHHHh---cCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-CcccHHHHh
Q 010064 272 -SDKKVSPQAKQDALRALYNLSI---FPSNISFILE---TDLIRYLLEMLGD--MELSERILSILSNLVS-TPEGRKAIS 341 (519)
Q Consensus 272 -~~~~~~~~~~~~A~~aL~nLs~---~~~n~~~l~~---~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~e~r~~i~ 341 (519)
.....+.+-...|..+|..+++ +-++.+.++. .-.++..-.+|.. .++-+.++.++.+++. .++.-..|+
T Consensus 602 ~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW 681 (1010)
T KOG1991|consen 602 EDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW 681 (1010)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH
Confidence 1122444556666666666643 2234443332 2333333344432 3577888888888876 444444444
Q ss_pred hcCCcchhhhhhccCCCCHHHHHHHHHHHHHH
Q 010064 342 RVPDAFPILVDVLNWTDSPGCQEKASYVLMVM 373 (519)
Q Consensus 342 ~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL 373 (519)
. .++.+.+.+.. .....-....-+|.|.
T Consensus 682 ~---ll~li~e~~~~-~~~dyf~d~~~~l~N~ 709 (1010)
T KOG1991|consen 682 G---LLELILEVFQD-DGIDYFTDMMPALHNY 709 (1010)
T ss_pred H---HHHHHHHHHhh-hhHHHHHHHHHHHhhh
Confidence 4 55566666552 2233333444444444
No 223
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.38 E-value=20 Score=31.63 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcC
Q 010064 130 ALEELKIVVKDLQSESEEQRREAASKVRSLAKE-NSETRVTLAMLGAIPPLAGMLDFQ--LADSQISSLYALLNLGI 203 (519)
Q Consensus 130 ~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~-~~~~r~~l~~~G~i~~Lv~lL~s~--~~~~~~~a~~aL~NLa~ 203 (519)
..+.++.|-+.|.++++.++..|+..|-.+.+. ...+...+....++..|+.++... .+.++..++..+.+-+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 344588899999999999999999999998877 356778888889999999999773 23488888888877664
No 224
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=73.16 E-value=1.3e+02 Score=31.88 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=77.3
Q ss_pred cHHHHHHHcCCHHHHHHHHHHHHHhcCC-cc-------------cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064 306 LIRYLLEMLGDMELSERILSILSNLVST-PE-------------GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM 371 (519)
Q Consensus 306 ~v~~Lv~lL~~~~v~~~Al~~L~nLs~~-~e-------------~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~ 371 (519)
.+..|+.+|.++++...+...+.-|..+ ++ .|+.+.. ..+|.|++-.+ ..+...+.....+|.
T Consensus 272 ~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~-~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 272 LLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFK-EADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHh-hcChhhHHHHHHHHH
Confidence 3556677777777777888888877775 33 2333444 26777777777 334447777788888
Q ss_pred HHhcCChhhHHHHH--HcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCC
Q 010064 372 VMAHKSYGDRQAMI--EAGIASALLELTLLGSTLAQKRASRILECLRVDKG 420 (519)
Q Consensus 372 nL~~~~~~~~~~i~--~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~ 420 (519)
.+..+-+. +.+. -..++|.|++-+...++.++..+..+|..+-++..
T Consensus 349 ~ll~~vP~--~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 349 HLLKNVPK--SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHhhCCH--HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 88876442 2222 24589999999999999999999999999887663
No 225
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.03 E-value=64 Score=37.15 Aligned_cols=71 Identities=10% Similarity=0.117 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 010064 131 LEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLG 202 (519)
Q Consensus 131 ~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa 202 (519)
.+.++..+..++++-...|-.++..|+.+.+.. .....+-..+++...+.+|++.+.-+-..|...+..||
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lc 796 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLC 796 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHH
Confidence 455888888899888999999999999999644 34444445789999999999988888778887666666
No 226
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=72.12 E-value=1.1e+02 Score=34.56 Aligned_cols=136 Identities=14% Similarity=0.208 Sum_probs=89.5
Q ss_pred hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc---CCHHHHHHHHHHHHHhcCCc
Q 010064 258 SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML---GDMELSERILSILSNLVSTP 334 (519)
Q Consensus 258 ~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL---~~~~v~~~Al~~L~nLs~~~ 334 (519)
...++|.|..-++. .+..++..++..+..++..-| ...+..-++|.|..+- ....++..++.++..|. ..
T Consensus 387 ~~~IlplL~~S~~~----~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~-q~ 459 (700)
T KOG2137|consen 387 KEKILPLLYRSLED----SDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI-QR 459 (700)
T ss_pred HHHHHHHHHHHhcC----cchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH-HH
Confidence 34467888888877 689999999999998886655 3344455666665553 23348888999998888 22
Q ss_pred ccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHH
Q 010064 335 EGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQ 405 (519)
Q Consensus 335 e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~ 405 (519)
-.+.++++ -+..+..-.+ ..+|.+....+.+.-++....+.. +.+.-..++|.++-+...+.-...
T Consensus 460 lD~~~v~d---~~lpi~~~~~-~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~ 525 (700)
T KOG2137|consen 460 LDKAAVLD---ELLPILKCIK-TRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGE 525 (700)
T ss_pred HHHHHhHH---HHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHH
Confidence 22333334 3344444454 467888877777777777653332 566677888988888887764333
No 227
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=72.00 E-value=1.2e+02 Score=31.05 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=106.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcC-CChhhHHHHHhc-Cc-HHHHHHhhcCCC---CCC-------HHHHHHHHHH
Q 010064 176 IPPLAGMLDFQLADSQISSLYALLNLGI-GNDLNKAAIVKA-GA-VHKMLKLIESPV---APN-------PSVSEAIVAN 242 (519)
Q Consensus 176 i~~Lv~lL~s~~~~~~~~a~~aL~NLa~-~~~~nk~~iv~a-G~-v~~Lv~lL~s~~---~~~-------~~~~~~a~~a 242 (519)
+..+...|.+....+...++..|.+++. +.......+.+. +. .+.|.+++.-.. ... ++++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5677788888888888999999999998 666777777764 43 455666653221 000 1677777766
Q ss_pred HHHhccCC--CChhhhh-hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHH-hcCCCc----cHHHHHhcCcHHHHHHHc
Q 010064 243 FLGLSALD--SNKPIIG-SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN-LSIFPS----NISFILETDLIRYLLEML 314 (519)
Q Consensus 243 L~~LS~~~--~~k~~I~-~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~n-Ls~~~~----n~~~l~~~g~v~~Lv~lL 314 (519)
++.+-... ..+..+. +.+.+..+.+-|.. ++.++....+.+|.. +..++. .+..+....++..|..+.
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~----D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly 213 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRK----DPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY 213 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccC----CCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh
Confidence 65544332 3355555 46667777777766 789999999999984 554442 455566777888888866
Q ss_pred C--CH----HHHHHHHHHHHHhcCCcc
Q 010064 315 G--DM----ELSERILSILSNLVSTPE 335 (519)
Q Consensus 315 ~--~~----~v~~~Al~~L~nLs~~~e 335 (519)
. ++ .+.+.+-..|..++.++.
T Consensus 214 ~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 214 SRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred cccCCcccchHHHHHHHHHHHHhcCCC
Confidence 3 33 478888888888887554
No 228
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=71.87 E-value=25 Score=31.45 Aligned_cols=74 Identities=9% Similarity=0.124 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHhc
Q 010064 130 ALEELKIVVKDLQSESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDF------QLADSQISSLYALLNLG 202 (519)
Q Consensus 130 ~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s------~~~~~~~~a~~aL~NLa 202 (519)
..+.++.+.+.|.++|+.++..|+..|-.+.+.- ..+...++..+++..|++++.. .+..++...+..+..-+
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3445889999999999999999999998888653 4677888888999999999953 46788888888887766
Q ss_pred C
Q 010064 203 I 203 (519)
Q Consensus 203 ~ 203 (519)
.
T Consensus 116 ~ 116 (139)
T cd03567 116 L 116 (139)
T ss_pred H
Confidence 4
No 229
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.19 E-value=32 Score=40.70 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=94.3
Q ss_pred CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC-CH--HHHHHHHHHHHHhcC-Ccc
Q 010064 260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG-DM--ELSERILSILSNLVS-TPE 335 (519)
Q Consensus 260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~-~~--~v~~~Al~~L~nLs~-~~e 335 (519)
...|+++.++++..-.+++.++..|.-||+.+.+-... .....+|.|+.+|. ++ -++.+++-.|+-|+. .|.
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 35788888886643346799999999999998754321 12235677788874 33 377788888888776 433
Q ss_pred cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064 336 GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRAS 409 (519)
Q Consensus 336 ~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~ 409 (519)
.-.. .-+.|...|. ..++.+++.|+-+|..|... ..|.-.|.++-+...+.++++.++.-|.
T Consensus 995 lie~------~T~~Ly~rL~-D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 995 LIEP------WTEHLYRRLR-DESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred ccch------hhHHHHHHhc-CccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 2221 3346677777 57889999999998888754 2444568888888888888888888777
No 230
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=70.71 E-value=1.5e+02 Score=31.87 Aligned_cols=171 Identities=12% Similarity=0.163 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHh-cCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHH
Q 010064 188 ADSQISSLYALLNL-GIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLV 266 (519)
Q Consensus 188 ~~~~~~a~~aL~NL-a~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV 266 (519)
.+-+..|+.-|..+ +.++.......+.. ++..+++.|.... +...+..|..+|..+..+...+-.=-..-+|..++
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~-iL~~l~EvL~d~~--~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAE-ILLLLLEVLSDSE--DEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHH-HHHHHHHHHccch--hhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 34455555534333 33333333333332 5677788887732 57778888888877765543222111123555555
Q ss_pred HHhhcCCCCCCHHHHHHHH-HHHHHhcCCCccHHHHHhcCcHHHHHHHc--CCHHHHHHHHHHHHHhcC--CcccHHHHh
Q 010064 267 KTLKNSDKKVSPQAKQDAL-RALYNLSIFPSNISFILETDLIRYLLEML--GDMELSERILSILSNLVS--TPEGRKAIS 341 (519)
Q Consensus 267 ~lL~~~~~~~~~~~~~~A~-~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL--~~~~v~~~Al~~L~nLs~--~~e~r~~i~ 341 (519)
+.-.. ....+...|. .++.-++.+..-.... .+..++ .|.+....++..+..|.. ..+--..++
T Consensus 378 eaa~d----s~~~v~~~Aeed~~~~las~~P~~~I~-------~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll 446 (516)
T KOG2956|consen 378 EAAKD----SQDEVMRVAEEDCLTTLASHLPLQCIV-------NISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL 446 (516)
T ss_pred HHHhC----CchhHHHHHHHHHHHHHHhhCchhHHH-------HHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh
Confidence 55554 2333333333 3344444443311111 111222 344566667777777776 222222233
Q ss_pred hcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhc
Q 010064 342 RVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAH 375 (519)
Q Consensus 342 ~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~ 375 (519)
.+..|.+++-.. +.+..+++.|+++|..|..
T Consensus 447 --~diaP~~iqay~-S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 447 --PDIAPCVIQAYD-STSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred --hhhhhHHHHHhc-CchHHhhhhHHHhHHHHHH
Confidence 358899999998 6788999999999988764
No 231
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.06 E-value=60 Score=39.63 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=99.5
Q ss_pred cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC
Q 010064 217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF 294 (519)
Q Consensus 217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~ 294 (519)
.||.|.+.=.+| +..++.+-. -+|+--..+ .|..+-. ...+.-|+.-|.+ ....++..++-||..|..+
T Consensus 999 LIPrLyRY~yDP---~~~Vq~aM~-sIW~~Li~D-~k~~vd~y~neIl~eLL~~lt~----kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 999 LIPRLYRYQYDP---DKKVQDAMT-SIWNALITD-SKKVVDEYLNEILDELLVNLTS----KEWRVREASCLALADLLQG 1069 (1702)
T ss_pred hhHHHhhhccCC---cHHHHHHHH-HHHHHhccC-hHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHHHcC
Confidence 577777776666 888877554 456533322 1222211 3345555555555 6788999999999999988
Q ss_pred CccHHH---HHhcCcHHHHHHHcCCH-----HHHHHHHHHHHHhcC------CcccHHHHhhcCCcchhhhh--hccCCC
Q 010064 295 PSNISF---ILETDLIRYLLEMLGDM-----ELSERILSILSNLVS------TPEGRKAISRVPDAFPILVD--VLNWTD 358 (519)
Q Consensus 295 ~~n~~~---l~~~g~v~~Lv~lL~~~-----~v~~~Al~~L~nLs~------~~e~r~~i~~~~g~i~~Lv~--lL~~s~ 358 (519)
.++-.. +. ..-..+...++|- +..+.++.+|+.|+. ++..-+++.+ -.+|.|++ +| +.
T Consensus 1070 ~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~--~iLPfLl~~gim--s~ 1143 (1702)
T KOG0915|consen 1070 RPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD--IILPFLLDEGIM--SK 1143 (1702)
T ss_pred CChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH--HHHHHHhccCcc--cc
Confidence 764332 22 2223333444442 144567777777764 1222234444 26666665 34 35
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCH
Q 010064 359 SPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGST 402 (519)
Q Consensus 359 ~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~ 402 (519)
-++++..+..+|.-|+..+...... .-...||.|+..+..-.+
T Consensus 1144 v~evr~~si~tl~dl~Kssg~~lkP-~~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSSGKELKP-HFPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred hHHHHHHHHHHHHHHHHhchhhhcc-hhhHHHHHHHHHccccch
Confidence 6889999999999999765431111 123467777776664443
No 232
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=68.93 E-value=29 Score=38.98 Aligned_cols=128 Identities=15% Similarity=0.147 Sum_probs=85.1
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
+...++|.|...+++. +..+++.++..+-..+..-+ ...+.+-.+|.|-.+... +.+..++.+++.|+.-+.
T Consensus 386 ~~~~IlplL~~S~~~~---~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~---tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDS---DVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFK---TTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred HHHHHHHHHHHHhcCc---chhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhc---ccchHHHHHHHHHHHHHH
Confidence 3445788888888888 88999999888877765433 333455568888777444 378999999999999888
Q ss_pred CCCccHHHHHhcCcHHHHHHHc-----CCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhcc
Q 010064 293 IFPSNISFILETDLIRYLLEML-----GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLN 355 (519)
Q Consensus 293 ~~~~n~~~l~~~g~v~~Lv~lL-----~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~ 355 (519)
+ .+-...+++.+..++ .++.+....+.+..++....-....+.. ..++|.++-+..
T Consensus 458 ---q---~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~-~~VlPlli~ls~ 518 (700)
T KOG2137|consen 458 ---Q---RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMA-ENVLPLLIPLSV 518 (700)
T ss_pred ---H---HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeeh-hhhhhhhhhhhh
Confidence 2 222223444444443 4667888888888888773222233333 357777776665
No 233
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=68.78 E-value=90 Score=33.02 Aligned_cols=165 Identities=16% Similarity=0.055 Sum_probs=95.7
Q ss_pred HHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc--------
Q 010064 243 FLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML-------- 314 (519)
Q Consensus 243 L~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL-------- 314 (519)
+..-+.+.+++..+ -..++.+|..+ .....+..++.++.-|+...+....+....-++.|+.+-
T Consensus 33 ~kFd~a~~d~r~eL-----~e~i~~Vle~~---~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~s 104 (532)
T KOG4464|consen 33 FKFDSANSDDRKEL-----GERIFEVLENG---EPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENS 104 (532)
T ss_pred hcccccchhhHHHH-----HHHHHHHHhcC---CCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCC
Confidence 34444555545544 34566666664 345667777888887877665444443333344444332
Q ss_pred ----CCHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCC---C-HHHHHHHHHHHHHHhcCChhhHH-HH
Q 010064 315 ----GDMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTD---S-PGCQEKASYVLMVMAHKSYGDRQ-AM 384 (519)
Q Consensus 315 ----~~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~---~-~~~qe~A~~~L~nL~~~~~~~~~-~i 384 (519)
.|.++..+++.+|+|+.- ++..+....+ ......+.+.+...- . -.++-.=...|.-|+.-....|. .+
T Consensus 105 l~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~-~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~ 183 (532)
T KOG4464|consen 105 LPTVADMHVIMESLKCLCNLVFHSQRAQDLFLE-NPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLI 183 (532)
T ss_pred CCcccchHHHHHHHHHHHHHHhccHHHHHHHHh-hhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHH
Confidence 133588899999999998 5556666655 456666666653110 1 12222234445555554445555 45
Q ss_pred HHcCcHHHHHHHhhcC---------C---HHHHHHHHHHHHHhh
Q 010064 385 IEAGIASALLELTLLG---------S---TLAQKRASRILECLR 416 (519)
Q Consensus 385 ~~~G~i~~Ll~Ll~~g---------s---~~~~~~A~~~L~~l~ 416 (519)
.+.++++-+...+.+. . |.--.+|..+|.-|-
T Consensus 184 ~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~F 227 (532)
T KOG4464|consen 184 AELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFF 227 (532)
T ss_pred HHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHh
Confidence 6788888888888731 2 244556777766655
No 234
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=68.44 E-value=37 Score=37.91 Aligned_cols=198 Identities=16% Similarity=0.135 Sum_probs=97.9
Q ss_pred cchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC----CCHHHHHHHHHHHHHhc
Q 010064 128 EEALEELKIVVKDLQSESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDF----QLADSQISSLYALLNLG 202 (519)
Q Consensus 128 ~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s----~~~~~~~~a~~aL~NLa 202 (519)
+|....+..+.+.+.++.... .+|+..|..|.... ..... .+..+..|+++ .++.++..|..++..|.
T Consensus 391 aGT~~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv 463 (618)
T PF01347_consen 391 AGTNPAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLV 463 (618)
T ss_dssp H-SHHHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHh
Confidence 355556666666665533222 23444444444332 12222 24455566654 45667777777777776
Q ss_pred CCChhhH---------HHHHhcCcHHHHHHhhc----CCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHh
Q 010064 203 IGNDLNK---------AAIVKAGAVHKMLKLIE----SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTL 269 (519)
Q Consensus 203 ~~~~~nk---------~~iv~aG~v~~Lv~lL~----s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL 269 (519)
.....+. ...+..-.++.|...+. .. +..-...++.+|-|+.. ...++.|...+
T Consensus 464 ~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i 530 (618)
T PF01347_consen 464 HKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRG---DEEEKIVYLKALGNLGH----------PESIPVLLPYI 530 (618)
T ss_dssp HHHHTT-----------SS--GGGTHHHHHHHHHHHHTT----HHHHHHHHHHHHHHT-----------GGGHHHHHTTS
T ss_pred CceeecccccccccccchhhHHHHHHHHHHHHHHHhhcc---CHHHHHHHHHHhhccCC----------chhhHHHHhHh
Confidence 4322221 22222335666666665 22 44555666777777742 23577777777
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc----CCHHHHHHHHHHHHHhcCCcccHHHHhhcCC
Q 010064 270 KNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML----GDMELSERILSILSNLVSTPEGRKAISRVPD 345 (519)
Q Consensus 270 ~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL----~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g 345 (519)
... ...+..++..|+++|.++....... +.+.|+.++ .+.+++..|..+|.. ..|. ..
T Consensus 531 ~~~-~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~lm~--~~P~--------~~ 592 (618)
T PF01347_consen 531 EGK-EEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPEVRIAAYLILMR--CNPS--------PS 592 (618)
T ss_dssp TTS-S-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HHHHHHHHHHHHH--T-----------HH
T ss_pred hhc-cccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChhHHHHHHHHHHh--cCCC--------HH
Confidence 652 1247889999999999885443211 223344554 345677777766654 2221 12
Q ss_pred cchhhhhhccCCCCHHHH
Q 010064 346 AFPILVDVLNWTDSPGCQ 363 (519)
Q Consensus 346 ~i~~Lv~lL~~s~~~~~q 363 (519)
.+..+...+.+..+.++.
T Consensus 593 ~l~~i~~~l~~E~~~QV~ 610 (618)
T PF01347_consen 593 VLQRIAQSLWNEPSNQVA 610 (618)
T ss_dssp HHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHhhCchHHHH
Confidence 344566667644444443
No 235
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.91 E-value=1.4e+02 Score=34.04 Aligned_cols=129 Identities=22% Similarity=0.207 Sum_probs=82.4
Q ss_pred HHHHH-HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhccCCCCh
Q 010064 176 IPPLA-GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKL-IESPVAPNPSVSEAIVANFLGLSALDSNK 253 (519)
Q Consensus 176 i~~Lv-~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~l-L~s~~~~~~~~~~~a~~aL~~LS~~~~~k 253 (519)
..+++ +++...++-++..+..++.---.+...|+ +|..|+.+ ..+. +.+++.+|+-+|-.....+
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk-------air~lLh~aVsD~---nDDVrRaAVialGFVl~~d--- 586 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNK-------AIRRLLHVAVSDV---NDDVRRAAVIALGFVLFRD--- 586 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchh-------hHHHhhccccccc---chHHHHHHHHHheeeEecC---
Confidence 33443 56666777777777666554333333333 66777776 4445 7899999988886644432
Q ss_pred hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhc
Q 010064 254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLV 331 (519)
Q Consensus 254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs 331 (519)
...+|..|++|... .++.++--++.+|.--|.++.+...+ ..+.+ +..|+. ++..|+-++.-+.
T Consensus 587 -----p~~~~s~V~lLses---~N~HVRyGaA~ALGIaCAGtG~~eAi---~lLep---l~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 587 -----PEQLPSTVSLLSES---YNPHVRYGAAMALGIACAGTGLKEAI---NLLEP---LTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred -----hhhchHHHHHHhhh---cChhhhhhHHHHHhhhhcCCCcHHHH---HHHhh---hhcChHHHHHHHHHHHHHHHH
Confidence 23567888889875 89999999999998877777655432 12222 334553 6666666666543
No 236
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=65.31 E-value=16 Score=41.79 Aligned_cols=134 Identities=17% Similarity=0.275 Sum_probs=87.3
Q ss_pred HHHHHhcCcHHHHHHhhcCCCC-----CCHHHHHHHHHHHHHhccCCCChhhhhh--------CCChHHHHHHhhcCCCC
Q 010064 209 KAAIVKAGAVHKMLKLIESPVA-----PNPSVSEAIVANFLGLSALDSNKPIIGS--------SGAVPFLVKTLKNSDKK 275 (519)
Q Consensus 209 k~~iv~aG~v~~Lv~lL~s~~~-----~~~~~~~~a~~aL~~LS~~~~~k~~I~~--------~gai~~LV~lL~~~~~~ 275 (519)
.+.+.+.|.+..++++...+.. +..++...|..+|.-+...++.+..++. ..+|..+++.-......
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 3446667777788877764321 1345666777777777777776665541 12344444332221122
Q ss_pred CCHHHHHHHHHHHHHhcCCC-ccHHH-----------------------------------HHhcCcHHHHHHHcC----
Q 010064 276 VSPQAKQDALRALYNLSIFP-SNISF-----------------------------------ILETDLIRYLLEMLG---- 315 (519)
Q Consensus 276 ~~~~~~~~A~~aL~nLs~~~-~n~~~-----------------------------------l~~~g~v~~Lv~lL~---- 315 (519)
-++.+++.|+.+|.|+.+.+ +++.. +..+.+|..|+++|.
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP 753 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence 48899999999999998766 23222 223467888888883
Q ss_pred --CHH-HHHHHHHHHHHhcCCcccHHHHhh
Q 010064 316 --DME-LSERILSILSNLVSTPEGRKAISR 342 (519)
Q Consensus 316 --~~~-v~~~Al~~L~nLs~~~e~r~~i~~ 342 (519)
+.+ ++.-||.+|.-|+.++..|+.+..
T Consensus 754 ~t~aD~IRalAc~~L~GLaR~~tVrQIltK 783 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLARDDTVRQILTK 783 (1516)
T ss_pred CCcHHHHHHHHHHHHhccccCcHHHHHHHh
Confidence 233 889999999999999988887654
No 237
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=64.81 E-value=55 Score=27.43 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=51.7
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANF 243 (519)
Q Consensus 172 ~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL 243 (519)
..+.+..|+.....+....+..++..|..|.. ++.....+.+-|++..|-++-..- ++..+..+-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~---~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNV---EPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 34567777777777777788999999999998 488888999999999987776655 566655544443
No 238
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.27 E-value=19 Score=29.82 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=57.7
Q ss_pred HHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 010064 309 YLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE 386 (519)
Q Consensus 309 ~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~ 386 (519)
..+..|.|+ +++-.++..|++|..... ..+......+..+...|+ ++++.+--.|+.+|..|+...++
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~-d~DsyVYL~aI~~L~~La~~~p~------- 76 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLK-DEDSYVYLNAIKGLAALADRHPD------- 76 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcC-CCCchHHHHHHHHHHHHHHHChH-------
Confidence 344555554 499999999999998554 222222457778888888 57888999999999999975332
Q ss_pred cCcHHHHHHHhhcCC
Q 010064 387 AGIASALLELTLLGS 401 (519)
Q Consensus 387 ~G~i~~Ll~Ll~~gs 401 (519)
.++|.|++.+.+.+
T Consensus 77 -~vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 77 -EVLPILLDEYADPS 90 (92)
T ss_pred -HHHHHHHHHHhCcc
Confidence 36777777666543
No 239
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=64.08 E-value=55 Score=35.59 Aligned_cols=110 Identities=21% Similarity=0.341 Sum_probs=77.0
Q ss_pred cCcHHHHHHHcCCHHHHHHHHHHHHHhcCCcccHHHH----hhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC--
Q 010064 304 TDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAI----SRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS-- 377 (519)
Q Consensus 304 ~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~e~r~~i----~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~-- 377 (519)
.+.|..++..++.+.+.+--+.++. +..++.+..+ .+ .++|+.|+++|....++.++..|+.+|+.+..-+
T Consensus 20 ~~~v~~llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~-q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 20 PNFVDNLLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAE-QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHH-hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 3788888888887777666666655 2233334333 34 7999999999985667889999999988885532
Q ss_pred -----------hhhHHHHHHcCcHHHHHHHhh--cCCHHHHHHHHHHHHHhh
Q 010064 378 -----------YGDRQAMIEAGIASALLELTL--LGSTLAQKRASRILECLR 416 (519)
Q Consensus 378 -----------~~~~~~i~~~G~i~~Ll~Ll~--~gs~~~~~~A~~~L~~l~ 416 (519)
...-..+.....|..|+.... .++..+-..+..++.+++
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIR 148 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 122344566778888888877 555666666777788876
No 240
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.79 E-value=95 Score=37.05 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHH
Q 010064 143 SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKM 221 (519)
Q Consensus 143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~L 221 (519)
.++++.|..|.-+|..+.--+.++... ..|.|+.++. ++++-++-++.-+|+-|++..+.-- +. .-+.|
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpnli----e~-~T~~L 1003 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI----EP-WTEHL 1003 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccccc----ch-hhHHH
Confidence 457899999999999977555444442 5789999997 7999999999999999998633221 21 45778
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC
Q 010064 222 LKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP 295 (519)
Q Consensus 222 v~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~ 295 (519)
...|.++ ++.++..|.-+|.+|-.+ ..|--.|-++-+...|.. .+..++.-|=.....|+...
T Consensus 1004 y~rL~D~---~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D----~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1004 YRRLRDE---SPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLED----PNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred HHHhcCc---cHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcC----CcHHHHHHHHHHHHHhhhcc
Confidence 8888888 899999999999988754 333347888888888887 57777777765555555443
No 241
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=63.70 E-value=1.6e+02 Score=29.25 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=105.1
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHhcc-CCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHH
Q 010064 221 MLKLIESPVAPNPSVSEAIVANFLGLSA-LDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNIS 299 (519)
Q Consensus 221 Lv~lL~s~~~~~~~~~~~a~~aL~~LS~-~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~ 299 (519)
|=..|.++ +...+..++..|..... .+... .+..-+..|+..+.+. -.+..+...++.+|..|........
T Consensus 4 Lg~~Ltse---d~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~r--l~D~~~~~~~l~gl~~L~~~~~~~~ 75 (262)
T PF14500_consen 4 LGEYLTSE---DPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSR--LDDHACVQPALKGLLALVKMKNFSP 75 (262)
T ss_pred hhhhhCCC---CHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHH--hccHhhHHHHHHHHHHHHhCcCCCh
Confidence 33455666 78888888777766432 22211 2333367777766542 2566677666777776664332111
Q ss_pred HHHhcCcHHHHHHHcCC----HHHHHHHHHHHHHhcCC-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064 300 FILETDLIRYLLEMLGD----MELSERILSILSNLVST-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA 374 (519)
Q Consensus 300 ~l~~~g~v~~Lv~lL~~----~~v~~~Al~~L~nLs~~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~ 374 (519)
.. ....+..+..-... ...+..+..+|..|... .+.-+.+. .+.+..+++++....+|..-..+..++..+.
T Consensus 76 ~~-~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 76 ES-AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred hh-HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 10 11122222222221 23666777777777653 22222222 2577777777776667777655555544443
Q ss_pred cC-----------------------Ch----------hhHHHH---------HHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064 375 HK-----------------------SY----------GDRQAM---------IEAGIASALLELTLLGSTLAQKRASRIL 412 (519)
Q Consensus 375 ~~-----------------------~~----------~~~~~i---------~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L 412 (519)
.. ++ +.+..+ ...-++|.|++-+.++++.+|.-+...|
T Consensus 153 ~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL 232 (262)
T PF14500_consen 153 QEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTL 232 (262)
T ss_pred HhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 21 01 111111 1245799999999999999999988888
Q ss_pred HHhhhcC
Q 010064 413 ECLRVDK 419 (519)
Q Consensus 413 ~~l~~~~ 419 (519)
.......
T Consensus 233 ~~c~~~y 239 (262)
T PF14500_consen 233 KACIENY 239 (262)
T ss_pred HHHHHHC
Confidence 8776543
No 242
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=63.42 E-value=2.2e+02 Score=30.72 Aligned_cols=181 Identities=13% Similarity=0.086 Sum_probs=102.0
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHH
Q 010064 134 LKIVVKDLQSE-SEEQRREAASKVRSLAKENS-ETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKA 210 (519)
Q Consensus 134 l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~-~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~ 210 (519)
+..+++.+... ..+.+..|...|..+..+.. ..+.... .-.+..+++.|+. .+...+..|++.|..++.. ...
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~---Q~~ 363 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTN---QPA 363 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh---chH
Confidence 55566655543 56778889988888665542 2222111 1245677888876 7788899999999999974 223
Q ss_pred HHHhc--CcHHHHHHhhcCCCCCCHHHHHHHH-HHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010064 211 AIVKA--GAVHKMLKLIESPVAPNPSVSEAIV-ANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRA 287 (519)
Q Consensus 211 ~iv~a--G~v~~Lv~lL~s~~~~~~~~~~~a~-~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~a 287 (519)
.+++. =+|..+++.-++. +.++...|. .++.-++.+.+.+. |..+..++.. .+.+....++..
T Consensus 364 ~l~DstE~ai~K~Leaa~ds---~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt----~D~~~~~~~iKm 429 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDS---QDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILT----ADEPRAVAVIKM 429 (516)
T ss_pred hhhchHHHHHHHHHHHHhCC---chhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhc----CcchHHHHHHHH
Confidence 34432 2566666666665 455544443 34455555544333 2333334443 344555555555
Q ss_pred HHHhcCCCc-cHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcC
Q 010064 288 LYNLSIFPS-NISFILETDLIRYLLEMLGDM--ELSERILSILSNLVS 332 (519)
Q Consensus 288 L~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~ 332 (519)
+..|...-. .--..+-..+.|.+++.-++. .++..|+.+|..+..
T Consensus 430 ~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 430 LTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 555543321 111111234556666666544 378888888876653
No 243
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=61.97 E-value=1.3e+02 Score=34.95 Aligned_cols=171 Identities=13% Similarity=0.116 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHhccCCCChhhh-hhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHH
Q 010064 232 NPSVSEAIVANFLGLSALDSNKPII-GSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYL 310 (519)
Q Consensus 232 ~~~~~~~a~~aL~~LS~~~~~k~~I-~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~L 310 (519)
+-.-+..|+..++-.-.... +... ...|.+..++...... .+..+...|+.+|.-|+..-.....=...+..+.|
T Consensus 266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kD---aN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~l 341 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKD---ANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSL 341 (815)
T ss_pred chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccC---cchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchH
Confidence 34444455555544333222 1211 1234455555554443 78888888999988887654322222345677777
Q ss_pred HHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHc
Q 010064 311 LEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY-GDRQAMIEA 387 (519)
Q Consensus 311 v~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~ 387 (519)
+.-+++. .+.+.++.++-..+.. .......+.+.+.+. +++|..+..+...+........ .....-.-.
T Consensus 342 ld~lkekk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk-~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~ 413 (815)
T KOG1820|consen 342 LDRLKEKKSELRDALLKALDAILNS-------TPLSKMSEAILEALK-GKNPQIKGECLLLLDRKLRKLGPKTVEKETVK 413 (815)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence 7777653 2555444444333321 000235556777788 6788888776655555544322 111111123
Q ss_pred CcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010064 388 GIASALLELTLLGSTLAQKRASRILEC 414 (519)
Q Consensus 388 G~i~~Ll~Ll~~gs~~~~~~A~~~L~~ 414 (519)
+++|.++....+.+..++..|..++.-
T Consensus 414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~ 440 (815)
T KOG1820|consen 414 TLVPHLIKHINDTDKDVRKAALEAVAA 440 (815)
T ss_pred HHhHHHhhhccCCcHHHHHHHHHHHHH
Confidence 467777777777778877777665543
No 244
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=57.53 E-value=35 Score=31.29 Aligned_cols=109 Identities=21% Similarity=0.211 Sum_probs=67.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcC--cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc----c
Q 010064 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAG--AVHKMLKLIESPVAPNPSVSEAIVANFLGLS----A 248 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG--~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS----~ 248 (519)
.+..+..+|++.++.-+..++..+.-++..++ ...+.+.| .+..|+.+++.+. ...+.+.++.+|..+- .
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~--~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPD--PPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhcC
Confidence 45567788999999999988888888776421 44554543 4888999998863 4667777766665543 3
Q ss_pred CCCChhhhhh---CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064 249 LDSNKPIIGS---SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293 (519)
Q Consensus 249 ~~~~k~~I~~---~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~ 293 (519)
.++....+.. .+.++.++++++ +......++.+|..+..
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~------~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQ------DSSCPETALDALATLLP 143 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHh------ccccHHHHHHHHHHHHH
Confidence 3343333332 233444444443 13456667777766654
No 245
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=57.10 E-value=1.1e+02 Score=32.58 Aligned_cols=231 Identities=14% Similarity=0.038 Sum_probs=122.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCh-hhHH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGND-LNKA 210 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~-~nk~ 210 (519)
-+..|+.++.+.|+.+|...-..|+.+-..-...|..+ .......++.++.. .........+..++.+..+.. +.|.
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~I-r~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFI-RKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHH-HHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 38899999999999999999999999776665666655 44556677777764 334445566777777776522 2222
Q ss_pred HHHhcCcHHHHHHhhcCCCCCCHHH-HHHHHHHHH-HhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 211 AIVKAGAVHKMLKLIESPVAPNPSV-SEAIVANFL-GLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL 288 (519)
Q Consensus 211 ~iv~aG~v~~Lv~lL~s~~~~~~~~-~~~a~~aL~-~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL 288 (519)
....- ....|+-+.+.+ .... ......++. .+..++..- .-.+..|++.|-. ++..-...-+.-|
T Consensus 213 eh~~f-l~~vllPLh~~~---~~~~y~~~L~~~~~~f~~kdp~l~-----~~~i~~llk~WP~----t~s~Kev~FL~el 279 (409)
T PF01603_consen 213 EHKQF-LRKVLLPLHKSP---HLSSYHQQLSYCVVQFLEKDPSLA-----EPVIKGLLKHWPK----TNSQKEVLFLNEL 279 (409)
T ss_dssp HHHHH-HHHTTGGGGGST---GGGGTHHHHHHHHHHHHHH-GGGH-----HHHHHHHHHHS-S----S-HHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHhcCC---cHHHHHHHHHHHHHHHHHhCchhH-----HHHHHHHHHhCCC----CCchhHHHHHHHH
Confidence 21111 223334444443 2111 122222222 233333222 2246677777755 5666666666666
Q ss_pred HHhcCCCc-cHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcC---CcccHHHHhhcCCcchhhhhhccCCCCHHH
Q 010064 289 YNLSIFPS-NISFILETDLIRYLLEMLGDM--ELSERILSILSNLVS---TPEGRKAISRVPDAFPILVDVLNWTDSPGC 362 (519)
Q Consensus 289 ~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~---~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~ 362 (519)
..+...-+ ....-+..-....+...+.++ .+.+.|+..+.|=.- ..++...+.- -.++.|.+....+-+..+
T Consensus 280 ~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p--~i~~~L~~~~~~HWn~~V 357 (409)
T PF01603_consen 280 EEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILP--IIFPALYRNSKNHWNQTV 357 (409)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHH--HHHHHHSSTTSS-SSTTH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHH--HHHHHHHHHHHHHhhHHH
Confidence 66665432 111111222333444444443 488888766543210 1233333333 245555555554557889
Q ss_pred HHHHHHHHHHHhcCChh
Q 010064 363 QEKASYVLMVMAHKSYG 379 (519)
Q Consensus 363 qe~A~~~L~nL~~~~~~ 379 (519)
+..|..++..|..-++.
T Consensus 358 r~~a~~vl~~l~~~d~~ 374 (409)
T PF01603_consen 358 RNLAQNVLKILMEMDPK 374 (409)
T ss_dssp HHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHhCHH
Confidence 99999988888876554
No 246
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=56.92 E-value=1.8e+02 Score=32.28 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=77.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--ChhhHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIG--NDLNKAA 211 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~--~~~nk~~ 211 (519)
+..+++.+.+.+..++...+..|+.+...-.+.-+.+ -+|.+..|.+-+-...+.++..|+.+|+.+-.. +++|+
T Consensus 93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l-~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~-- 169 (885)
T COG5218 93 FYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVL-ANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR-- 169 (885)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH--
Confidence 7788888888888899999998888874332333333 456777776655556678899999999887642 34444
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhh
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIG 257 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~ 257 (519)
++..|+.++++.. +.+++.. +|++++.++...+.|.
T Consensus 170 -----~~n~l~~~vqnDP--S~EVRr~---allni~vdnsT~p~Il 205 (885)
T COG5218 170 -----IVNLLKDIVQNDP--SDEVRRL---ALLNISVDNSTYPCIL 205 (885)
T ss_pred -----HHHHHHHHHhcCc--HHHHHHH---HHHHeeeCCCcchhHH
Confidence 3446777787762 5677774 4788887776666655
No 247
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=55.18 E-value=38 Score=30.08 Aligned_cols=74 Identities=15% Similarity=0.075 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC-CCHH---HHHHHHHHHHHhcC
Q 010064 130 ALEELKIVVKDLQSESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDF-QLAD---SQISSLYALLNLGI 203 (519)
Q Consensus 130 ~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s-~~~~---~~~~a~~aL~NLa~ 203 (519)
..+.++.|-+.|.++++.++..|+..|-.+.+.- +.+...+....++..|+.++.. .... ++..++..|...+.
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3455888999999999999999999999998775 5777888778889999998865 3333 78888877776654
No 248
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=54.73 E-value=1.1e+02 Score=27.94 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=79.8
Q ss_pred cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 010064 217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS 296 (519)
Q Consensus 217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~ 296 (519)
.++.|+.+|+.+. +..++.+++.+|-.|.+.++.+........ + ..-... .+.......+ .+....+
T Consensus 11 LL~~L~~iLk~e~--s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~---~~~~~~---~~~~~~~~~l---~~~~~~~- 77 (160)
T PF11865_consen 11 LLDILLNILKTEQ--SQSIRREALRVLGILGALDPYKHKSIQKSL-D---SKSSEN---SNDESTDISL---PMMGISP- 77 (160)
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHhhhccccCcHHHhcccccC-C---cccccc---ccccchhhHH---hhccCCC-
Confidence 5678888998873 689999999999999988887666432211 1 000000 1111111111 1111111
Q ss_pred cHHHHHhcCcHHHHHHHcCCHH---HHHHHHHHHHHhcC--CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064 297 NISFILETDLIRYLLEMLGDME---LSERILSILSNLVS--TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM 371 (519)
Q Consensus 297 n~~~l~~~g~v~~Lv~lL~~~~---v~~~Al~~L~nLs~--~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~ 371 (519)
......-.-++..|+.+|.|+. ....++.++.++.. ...+ ..... ..+|.++..+. +.++..++.-.+-|+
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~--~viP~~l~~i~-~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLP--QVIPIFLRVIR-TCPDSLREFYFQQLA 153 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHH--HHhHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 1222333457788888887765 33456666666654 3333 33333 38899999998 444577776666666
Q ss_pred HHh
Q 010064 372 VMA 374 (519)
Q Consensus 372 nL~ 374 (519)
.|.
T Consensus 154 ~lv 156 (160)
T PF11865_consen 154 DLV 156 (160)
T ss_pred HHH
Confidence 554
No 249
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=52.57 E-value=2.8e+02 Score=28.47 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=111.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-cChh-hHHHHHhcCC-HHHHHHhhcC-----CC--------HHHHHHH
Q 010064 131 LEELKIVVKDLQSESEEQRREAASKVRSLAK-ENSE-TRVTLAMLGA-IPPLAGMLDF-----QL--------ADSQISS 194 (519)
Q Consensus 131 ~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~-~~~~-~r~~l~~~G~-i~~Lv~lL~s-----~~--------~~~~~~a 194 (519)
.+.++.+.+.|++........+++.|..++. .... .++.+..-+. .+.|..++.. .. +.+|...
T Consensus 55 ~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~f 134 (330)
T PF11707_consen 55 QNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNF 134 (330)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHH
Confidence 3447778888888887788889999999887 5534 4444444443 3455556532 11 2677777
Q ss_pred HHHHHHhcC-CChhhHHHHHhc-CcHHHHHHhhcCCCCCCHHHHHHHHHHHHH-hccCC----CChhhhhhCCChHHHHH
Q 010064 195 LYALLNLGI-GNDLNKAAIVKA-GAVHKMLKLIESPVAPNPSVSEAIVANFLG-LSALD----SNKPIIGSSGAVPFLVK 267 (519)
Q Consensus 195 ~~aL~NLa~-~~~~nk~~iv~a-G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~-LS~~~----~~k~~I~~~gai~~LV~ 267 (519)
...+..+.. .+...+..+++. +.+..+.+-|..+ +.++...++.+|.. +..++ ..|..+.+..++..|+.
T Consensus 135 I~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D---~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 135 IRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD---PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC---CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 776665554 455567777765 6788899988887 78888888888874 43333 34666677788999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHhcCCCcc
Q 010064 268 TLKNSDKKVSPQAKQDALRALYNLSIFPSN 297 (519)
Q Consensus 268 lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n 297 (519)
+.....+.....+...+-..|..+|+++.+
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhcCCCc
Confidence 777631112347888888889999887653
No 250
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=52.56 E-value=2.5e+02 Score=27.95 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhcC-------CChhhHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCCChhhhhh
Q 010064 188 ADSQISSLYALLNLGI-------GNDLNKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDSNKPIIGS 258 (519)
Q Consensus 188 ~~~~~~a~~aL~NLa~-------~~~~nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~~k~~I~~ 258 (519)
....+.+...|..|+. ++.+++-.+.=.+.+|.++..+.++.. ++..+ ..++..|..++... .
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~-~~~A~~La~~a~~~-------~ 147 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQEC-IEIAEALAQVAEAQ-------G 147 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHH-HHHHHHHHHHHHhC-------C
Confidence 3344556666666663 223344444444667888888877720 01333 34455666666221 1
Q ss_pred CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCccc
Q 010064 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEG 336 (519)
Q Consensus 259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~ 336 (519)
...+..++.........+..+-...++..|+.-.. ++ .+...+-.|+.+|.. +.++...+.+|..|-...+.
T Consensus 148 ~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~ 221 (262)
T PF14225_consen 148 LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDM 221 (262)
T ss_pred CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccC
Confidence 22344444444432122344455555555554221 11 123455667788853 34889999999999885555
Q ss_pred HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064 337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA 374 (519)
Q Consensus 337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~ 374 (519)
++. .. .+.+.+|..+|+ + ....+|..+|-+..
T Consensus 222 ~~~-~~-~dlispllrlL~-t---~~~~eAL~VLd~~v 253 (262)
T PF14225_consen 222 RSP-HG-ADLISPLLRLLQ-T---DLWMEALEVLDEIV 253 (262)
T ss_pred CCC-cc-hHHHHHHHHHhC-C---ccHHHHHHHHHHHH
Confidence 555 33 468999999998 3 23345566655443
No 251
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=50.87 E-value=2.6e+02 Score=27.73 Aligned_cols=64 Identities=25% Similarity=0.281 Sum_probs=37.5
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIG 204 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~ 204 (519)
.+.+.++.|.+.|...+...+ .+...+ +..+ +.....||.|+..= +++.+-..++..|.+|++.
T Consensus 10 dcl~~LkdL~r~lr~dd~~~~-~v~r~l---g~~~------iv~~DLiPiL~~~~--~~~~l~~~~l~LLV~LT~P 73 (266)
T PF04821_consen 10 DCLECLKDLKRFLRRDDEDQR-DVRRQL---GEWN------IVQKDLIPILISYK--DDDKLFLACLRLLVNLTWP 73 (266)
T ss_pred hHHHHHHHHHHHHHHhCcchH-HHHHHH---HHhc------hhhhhHHHHHHhcc--CchHHHHHHHHHHHHhCCC
Confidence 445557777777766554443 222222 2111 22334455554432 4788889999999999984
No 252
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=50.33 E-value=1.9e+02 Score=27.04 Aligned_cols=142 Identities=19% Similarity=0.168 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhcc-Ch----hhHHHHHh------cCCHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhc
Q 010064 148 QRREAASKVRSLAKE-NS----ETRVTLAM------LGAIPPLAG-MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA 215 (519)
Q Consensus 148 ~~~~Aa~~L~~La~~-~~----~~r~~l~~------~G~i~~Lv~-lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a 215 (519)
+|..|+.+|..+++. +. .++..+.- ...-+.|+. ++.++++.++..|+.+|..|-.+....-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 356677777777765 22 12222221 224445554 4466889999999999999988743332222111
Q ss_pred ----CcH---------------HHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCC
Q 010064 216 ----GAV---------------HKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKV 276 (519)
Q Consensus 216 ----G~v---------------~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~ 276 (519)
+.. ..|+..|+.+. +..+......+|..|..+.++.. .+.|.++.++.-+.....+.
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~--~~~~l~q~lK~la~Lv~~tPY~r--L~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEK--SPPVLTQLLKCLAVLVQATPYHR--LPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHccCChhh--cCHhHHHHHHHHHHHHHhcC
Confidence 111 22333344332 33444444455555544443322 13444554444332221225
Q ss_pred CHHHHHHHHHHHHHhcC
Q 010064 277 SPQAKQDALRALYNLSI 293 (519)
Q Consensus 277 ~~~~~~~A~~aL~nLs~ 293 (519)
+.+++..++.++.-|..
T Consensus 158 d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLS 174 (182)
T ss_pred CCcHHHHHHHHHHHHHc
Confidence 66666666666665544
No 253
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=50.14 E-value=4.5e+02 Score=30.23 Aligned_cols=255 Identities=11% Similarity=0.048 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhc---cChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhc
Q 010064 150 REAASKVRSLAK---ENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIE 226 (519)
Q Consensus 150 ~~Aa~~L~~La~---~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~ 226 (519)
.-|++.+.++.. .+...+..+ +.=+++.++..++++..-++..++..+.-+.. +-+..-+-..+.+....+++
T Consensus 434 egalr~lasi~s~itk~sp~an~m-e~fiv~hv~P~f~s~ygfL~Srace~is~~ee---Dfkd~~ill~aye~t~ncl~ 509 (970)
T COG5656 434 EGALRLLASIKSFITKMSPAANVM-EYFIVNHVIPAFRSNYGFLKSRACEFISTIEE---DFKDNGILLEAYENTHNCLK 509 (970)
T ss_pred hhHHHHHHHHHHHhccCchHHHHH-HHHHHHHhhHhhcCcccchHHHHHHHHHHHHH---hcccchHHHHHHHHHHHHHh
Confidence 445555555432 222333322 33345666677788888888899998888843 33333333345666777888
Q ss_pred CCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHHHHH-HhcCC-CccHHHHH
Q 010064 227 SPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALRALY-NLSIF-PSNISFIL 302 (519)
Q Consensus 227 s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~-nLs~~-~~n~~~l~ 302 (519)
+. +..++-.|+-+|-.+-.+......+.+ .+.+..|+.+-+. -+.+........+. +.+.. ......+.
T Consensus 510 nn---~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~----feiD~LS~vMe~fVe~fseELspfa~eLa 582 (970)
T COG5656 510 NN---HLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT----FEIDPLSMVMESFVEYFSEELSPFAPELA 582 (970)
T ss_pred cC---CcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc----ccchHHHHHHHHHHHHhHHhhchhHHHHH
Confidence 76 677877777777666555554555433 2333333333222 34444443333332 11110 01111111
Q ss_pred hcCcHHHHHHH----cCCH--------HHHHHHHHHHHHhcC---CcccHHHHhhc--CCcchhhhhhccCCCCHHHHHH
Q 010064 303 ETDLIRYLLEM----LGDM--------ELSERILSILSNLVS---TPEGRKAISRV--PDAFPILVDVLNWTDSPGCQEK 365 (519)
Q Consensus 303 ~~g~v~~Lv~l----L~~~--------~v~~~Al~~L~nLs~---~~e~r~~i~~~--~g~i~~Lv~lL~~s~~~~~qe~ 365 (519)
...++..+.+ +..+ +-+..|.++|.-+.+ +-+++..+... ....|.+-=+|. +.-...-.+
T Consensus 583 -~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filk-n~i~dfy~E 660 (970)
T COG5656 583 -GSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILK-NEISDFYQE 660 (970)
T ss_pred -HHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-hhHHHHHHH
Confidence 1223322222 2111 223345555544433 33444433221 123333333444 444556667
Q ss_pred HHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh----cCC-HHHHHHHHHHHHHhhhcCCCcc
Q 010064 366 ASYVLMVMAHKSYGDRQAMIEAGIASALLELTL----LGS-TLAQKRASRILECLRVDKGKQV 423 (519)
Q Consensus 366 A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~----~gs-~~~~~~A~~~L~~l~~~~~~~~ 423 (519)
|+.+|-+.+..+.+ + + ++.+.+.+++. +.. ..--..+.-+|.++--.+++..
T Consensus 661 a~dildg~tf~ske----I-~-pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef 717 (970)
T COG5656 661 ALDILDGYTFMSKE----I-E-PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEF 717 (970)
T ss_pred HHHHHhhhhHHHHH----h-h-hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccc
Confidence 88888777654222 1 1 44444444444 433 3556778888888886544443
No 254
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=49.21 E-value=1.5e+02 Score=27.02 Aligned_cols=144 Identities=14% Similarity=0.042 Sum_probs=76.8
Q ss_pred ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhc-CCcccHHH
Q 010064 261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLV-STPEGRKA 339 (519)
Q Consensus 261 ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs-~~~e~r~~ 339 (519)
.++.|+++|+.. .+..++..++.+|..|-.-+..+-+......-. -...-...+.....+ ...+++ ..++...
T Consensus 11 LL~~L~~iLk~e---~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~-~~~~~~~~~~~~~~l-~~~~~~~~~ee~y~- 84 (160)
T PF11865_consen 11 LLDILLNILKTE---QSQSIRREALRVLGILGALDPYKHKSIQKSLDS-KSSENSNDESTDISL-PMMGISPSSEEYYP- 84 (160)
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHhhhccccCcHHHhcccccCCc-cccccccccchhhHH-hhccCCCchHHHHH-
Confidence 467788888884 679999999999999976655444422211100 000000001111111 111111 1222222
Q ss_pred HhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064 340 ISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415 (519)
Q Consensus 340 i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l 415 (519)
. -++..|+.+|+...-..-...++.++.++.......+ .-.=.-++|.++..+...++..++.-..-|..|
T Consensus 85 --~--vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 85 --T--VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred --H--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2 3556788888743333344566777777774311112 112235799999999988777776655555444
No 255
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=49.17 E-value=1.9e+02 Score=32.54 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHHhcCCChhhHHHHH---hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCCh
Q 010064 186 QLADSQISSLYALLNLGIGNDLNKAAIV---KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAV 262 (519)
Q Consensus 186 ~~~~~~~~a~~aL~NLa~~~~~nk~~iv---~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai 262 (519)
-.++.+.-|+-+|+-+..+...+-..+. ....+..++..+. . ++..+-.+++.|.|+-.++..+..+... .
T Consensus 556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~---~~an~ll~vR~L~N~f~~~~g~~~~~s~--~ 629 (745)
T KOG0301|consen 556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A---DPANQLLVVRCLANLFSNPAGRELFMSR--L 629 (745)
T ss_pred CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c---chhHHHHHHHHHHHhccCHHHHHHHHHH--H
Confidence 3445556666666666665333333322 1224444544444 2 4677788899999998887666666442 2
Q ss_pred HHHHHH---hhcCCCCCCHHHHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHc-------CCHHHHHHHHHHHHHh
Q 010064 263 PFLVKT---LKNSDKKVSPQAKQDALRALYNLSIF--PSNISFILETDLIRYLLEML-------GDMELSERILSILSNL 330 (519)
Q Consensus 263 ~~LV~l---L~~~~~~~~~~~~~~A~~aL~nLs~~--~~n~~~l~~~g~v~~Lv~lL-------~~~~v~~~Al~~L~nL 330 (519)
..+... .+.. .+..++...+....|++.. .++.+ .+..+.|...+ .|-+..-..+.+|++|
T Consensus 630 ~~i~~~~~~~~s~---~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 630 ESILDPVIEASSL---SNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred HHHhhhhhhhhcc---cchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 222222 2221 3344554444444555421 12211 34444444333 2223556788889999
Q ss_pred cCCcccHHHHhhcCCcchhhhhhccC
Q 010064 331 VSTPEGRKAISRVPDAFPILVDVLNW 356 (519)
Q Consensus 331 s~~~e~r~~i~~~~g~i~~Lv~lL~~ 356 (519)
...+.....+.. .-.+..++.-+..
T Consensus 703 ~t~~~~~~~~A~-~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 703 MTVDASVIQLAK-NRSVDSIAKKLKE 727 (745)
T ss_pred ccccHHHHHHHH-hcCHHHHHHHHHH
Confidence 887766666655 3455566665553
No 256
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=48.71 E-value=1.3e+02 Score=29.81 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=67.6
Q ss_pred hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC--Cc---cHHHHHhcCcHHHHHHHcCCHH----HHHHHHHHHH
Q 010064 258 SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF--PS---NISFILETDLIRYLLEMLGDME----LSERILSILS 328 (519)
Q Consensus 258 ~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~--~~---n~~~l~~~g~v~~Lv~lL~~~~----v~~~Al~~L~ 328 (519)
+.-+.|.|+.+++.. ++ .+..+..+ ++ ..-..+-.|-+++|..++.+++ ++..|+.+|.
T Consensus 71 e~~A~~~li~l~~~~---~~---------~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQD---DD---------FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCC---cc---------hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 466899999999763 22 11111111 11 1122334577888888887664 7889999999
Q ss_pred HhcC-CcccHHHHhhcCCcchhhhhh-ccCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHcCcHHH
Q 010064 329 NLVS-TPEGRKAISRVPDAFPILVDV-LNWTDSPGCQEKASYVLMVMAHKS-YGDRQAMIEAGIASA 392 (519)
Q Consensus 329 nLs~-~~e~r~~i~~~~g~i~~Lv~l-L~~s~~~~~qe~A~~~L~nL~~~~-~~~~~~i~~~G~i~~ 392 (519)
.++. .+..|..+++ .+..++.- +. .....+...-+..++.|.... -...+.+.+.|.|+.
T Consensus 139 ~l~~~~~~~Re~vi~---~f~~ll~~~l~-~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 139 FLVHEGPISREEVIQ---YFRELLNYFLE-RNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred HHHHcCCCCHHHHHH---HHHHHHHHHhc-cCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 9998 7777888887 45555554 54 332333333333333433221 022445556666654
No 257
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.66 E-value=34 Score=37.51 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=45.0
Q ss_pred CcHHHHHHH-cC--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064 305 DLIRYLLEM-LG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS 377 (519)
Q Consensus 305 g~v~~Lv~l-L~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~ 377 (519)
|+|..|+.. .. +++++..|+.+|+-.+..+ ...+...+++|..+.++.++-..+.+|..-|.+.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 455556555 22 4568888887777666432 3466677888877889999988888888888764
No 258
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.53 E-value=1.3e+02 Score=32.49 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=78.3
Q ss_pred CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC-CccHHHHHh---cCcHHHHHHHcCCHHHHHHHHHHHHHhcCCc
Q 010064 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFILE---TDLIRYLLEMLGDMELSERILSILSNLVSTP 334 (519)
Q Consensus 259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~l~~---~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~ 334 (519)
.|.+.-++..+.......+...+..|+..|.|.+.. ++-+..... .+.|..|..-.. .+++-.++.+|..+....
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhh
Confidence 466665555554433345678999999999999988 332222221 233333333322 567777777777666422
Q ss_pred ccHH---HHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHH--cCcHHHHHHHhhcCCHHHHHHH
Q 010064 335 EGRK---AISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY-GDRQAMIE--AGIASALLELTLLGSTLAQKRA 408 (519)
Q Consensus 335 e~r~---~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~--~G~i~~Ll~Ll~~gs~~~~~~A 408 (519)
.++. -+.. ..-.+..+.. +.+++.+-.|..++..|+.-.. +.+.-+.+ .+...+|+-.+.+.+|.+-...
T Consensus 332 ~~~~l~~~~l~---ialrlR~l~~-se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 332 SNDDLESYLLN---IALRLRTLFD-SEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred hhcchhhhchh---HHHHHHHHHH-hcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH
Confidence 2222 1222 3335555666 6678888887666555543211 22222222 1122334445556677655444
Q ss_pred HHHH
Q 010064 409 SRIL 412 (519)
Q Consensus 409 ~~~L 412 (519)
...+
T Consensus 408 r~~~ 411 (533)
T KOG2032|consen 408 RSEL 411 (533)
T ss_pred HHHH
Confidence 3333
No 259
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=46.14 E-value=56 Score=29.92 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcC--CHHHHHHhhcCC-CHHHHHHHHHHHHHhc---CCChh
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLG--AIPPLAGMLDFQ-LADSQISSLYALLNLG---IGNDL 207 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G--~i~~Lv~lL~s~-~~~~~~~a~~aL~NLa---~~~~~ 207 (519)
+..+..+|++.+...+..++..++..+..+ -.+.+.+.| .+..|+.+|+.+ ...+.+.++.+|..|. .+.++
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~--~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQC--SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 677888899999999999999988888554 145554433 578899999874 4455666666655554 44444
Q ss_pred hHHHHHhc---CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 208 NKAAIVKA---GAVHKMLKLIESPVAPNPSVSEAIVANFLGL 246 (519)
Q Consensus 208 nk~~iv~a---G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L 246 (519)
....+.-. ++++.++.+++.. ...+.++.+|..+
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~~-----~~~~~~l~~L~~l 141 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQDS-----SCPETALDALATL 141 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhcc-----ccHHHHHHHHHHH
Confidence 44444322 3455566665531 3344444445443
No 260
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=43.44 E-value=3.2e+02 Score=26.56 Aligned_cols=127 Identities=21% Similarity=0.281 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC---------------HH-----HHHHHHHHHHHhcCCccc
Q 010064 277 SPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD---------------ME-----LSERILSILSNLVSTPEG 336 (519)
Q Consensus 277 ~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~---------------~~-----v~~~Al~~L~nLs~~~e~ 336 (519)
+..-...++..+..|...++....+.+.+.++.+...|.. ++ +...=...|+-|+.++.+
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 4666777888899999888878888888999888877721 11 333455678889999999
Q ss_pred HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064 337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415 (519)
Q Consensus 337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l 415 (519)
.+.+.+ .+.+..+..+...++.+.+ ..-+|.+|=...+++.+.+ |-..+..++..+|..|...|..+
T Consensus 157 l~lLe~-~~if~~l~~i~~~~~~~~l---~klil~~LDY~~~~~~R~i--------LsKaLt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 157 LKLLER-WNIFTMLYHIFSLSSRDDL---LKLILSSLDYSVDGHPRII--------LSKALTSGSESIRLYATKHLRVL 223 (226)
T ss_pred HHHHHH-CCHHHHHHHHHccCchHHH---HHHHHhhCCCCCccHHHHH--------HHHHHhcCCHHHHHHHHHHHHHH
Confidence 988888 6999999999884333322 2335555533322322222 23455677889999988888765
No 261
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=42.54 E-value=2.1e+02 Score=28.66 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=48.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH-HHHHhcCcHHHHHHh----hc---C--CCCCCHHHHHHHHHHHH
Q 010064 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK-AAIVKAGAVHKMLKL----IE---S--PVAPNPSVSEAIVANFL 244 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk-~~iv~aG~v~~Lv~l----L~---s--~~~~~~~~~~~a~~aL~ 244 (519)
++|+++.++++.++..+..++.+|..+....+... ..+...|..+.+-.. +. . +.+.+..+...+.-+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999997533332 235667766555443 22 0 00003455566666666
Q ss_pred Hhc
Q 010064 245 GLS 247 (519)
Q Consensus 245 ~LS 247 (519)
.|.
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 663
No 262
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=41.65 E-value=1.3e+02 Score=25.20 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=51.0
Q ss_pred CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010064 344 PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILEC 414 (519)
Q Consensus 344 ~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~ 414 (519)
...+..|++..+. .++..++.+...+..|... +...+.+.+-|++.-|-++-..-++..+.....++..
T Consensus 29 ~~Ll~~LleWFnf-~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 29 RLLLKQLLEWFNF-PPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHHHHHHHHhCC-CCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 4566677777763 3444778888889998887 4457778889999998888777788888877766653
No 263
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=41.48 E-value=65 Score=25.66 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=50.7
Q ss_pred CCcchhhhhhccCCCCHHHHHHH-HHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 344 PDAFPILVDVLNWTDSPGCQEKA-SYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 344 ~g~i~~Lv~lL~~s~~~~~qe~A-~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
.|.+....++|....+++..+.. .|+|++-.+. .+|+|...-...-|.++.....++..+++-
T Consensus 9 dgLveKytELL~Ge~~~e~~EkVk~W~lYshiaK------------sMPpL~kHWN~~~PeaK~~ik~li~~Ik~l 72 (82)
T PF10835_consen 9 DGLVEKYTELLLGETSPEMKEKVKQWALYSHIAK------------SMPPLAKHWNGTYPEAKEEIKELIEEIKQL 72 (82)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH------------hCcHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 36778888888756778777665 8999887765 579999998888999999999999888853
No 264
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.40 E-value=99 Score=34.10 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=69.8
Q ss_pred cCCHHHHHHh-hcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC
Q 010064 173 LGAIPPLAGM-LDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS 251 (519)
Q Consensus 173 ~G~i~~Lv~l-L~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~ 251 (519)
.|+|..|+.+ ++..+.+++.+|.-||+-.|.+ ++ ..++..+++|... ++.-++...+ .-+.+++...
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~-D~--------~~lv~tvelLs~s--hN~hVR~g~A-vaLGiacag~ 617 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD-DR--------DLLVGTVELLSES--HNFHVRAGVA-VALGIACAGT 617 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEec-Cc--------chhhHHHHHhhhc--cchhhhhhhH-HHhhhhhcCC
Confidence 4566777666 5567888999999999988886 32 3455666666543 1566655443 3344443322
Q ss_pred ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC--ccHHHHHhcCcHHHHHHHcCC
Q 010064 252 NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP--SNISFILETDLIRYLLEMLGD 316 (519)
Q Consensus 252 ~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~--~n~~~l~~~g~v~~Lv~lL~~ 316 (519)
+.+-++..|=.++.. .+.-+++.|.-++.-+.... +-.+.+ .+++..+.+++.+
T Consensus 618 -----G~~~a~diL~~L~~D----~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~ 673 (926)
T COG5116 618 -----GDKVATDILEALMYD----TNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVD 673 (926)
T ss_pred -----ccHHHHHHHHHHhhC----cHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhh
Confidence 122345555555555 56678888888887775432 211111 3445556666643
No 265
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=40.88 E-value=1.2e+02 Score=27.29 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=58.0
Q ss_pred cchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhc-CCHHHHHHHHHHHHHhhhc
Q 010064 346 AFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLL-GSTLAQKRASRILECLRVD 418 (519)
Q Consensus 346 ~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~-gs~~~~~~A~~~L~~l~~~ 418 (519)
++..|..=|. +.+|.++-.|..+|-.+..+ .......+.....+..|..++.. ..+.++.++..+++...+.
T Consensus 38 a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 4556666677 57899999999988888765 33457778888999999999998 7889999999999888754
No 266
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.80 E-value=80 Score=29.54 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=52.1
Q ss_pred cchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 010064 346 AFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK 419 (519)
Q Consensus 346 ~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~ 419 (519)
.++.++++.. +.+..++..|+.++.-..+..--+= .-++|.|+.|..++++.++..|..++..+.+-.
T Consensus 9 yl~~Il~~~~-~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCL-SSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 6677778777 5688899899888876665311100 127999999999999999999999999998654
No 267
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=40.00 E-value=3.3e+02 Score=28.54 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=78.0
Q ss_pred ccCChhhHHHHHhcchhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc------CCC
Q 010064 115 LAEGEAASEIKKKEEALEELKIVVKDLQSES-EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD------FQL 187 (519)
Q Consensus 115 ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~-~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~------s~~ 187 (519)
++..++..+.+ +..-.|.++. .+...+ ...+..|+..|+.|++... ..+.. -+...+-.+|. +.+
T Consensus 197 l~~~e~D~Elf-EddP~EYIrr---d~e~sd~~TrR~AA~dfl~~L~~~~~---~~v~~-i~~~~i~~~l~~y~~~~~~~ 268 (370)
T PF08506_consen 197 LCLREEDEELF-EDDPEEYIRR---DLEGSDSDTRRRAACDFLRSLCKKFE---KQVTS-ILMQYIQQLLQQYASNPSNN 268 (370)
T ss_dssp HS--HHHHHHH-HHSHHHHHHH---HSCSS---SHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHH-TTT-
T ss_pred cCCCHHHHHHH-ccCHHHHHHh---hccccccCCcHHHHHHHHHHHHHHHh---HHHHH-HHHHHHHHHHHHHhhCCccc
Confidence 34444444444 2333333443 233223 3456778899999995421 11111 01123333443 356
Q ss_pred HHHHHHHHHHHHHhcCCChh------------hHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhh
Q 010064 188 ADSQISSLYALLNLGIGNDL------------NKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPI 255 (519)
Q Consensus 188 ~~~~~~a~~aL~NLa~~~~~------------nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~ 255 (519)
...+..|+..+..|+..... +-..++..-++|-|. --.+. .+-++..|+..+...-.. =.+..
T Consensus 269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~---~piLka~aik~~~~Fr~~-l~~~~ 343 (370)
T PF08506_consen 269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNS---HPILKADAIKFLYTFRNQ-LPKEQ 343 (370)
T ss_dssp HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S----HHHHHHHHHHHHHHGGG-S-HHH
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCC---CcchHHHHHHHHHHHHhh-CCHHH
Confidence 67889999999999976322 123333444444443 10112 455666665555444322 11332
Q ss_pred hhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 256 IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL 288 (519)
Q Consensus 256 I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL 288 (519)
+ .+.+|.|+..|.+ .+.-+...|+.|+
T Consensus 344 l--~~~~~~l~~~L~~----~~~vv~tyAA~~i 370 (370)
T PF08506_consen 344 L--LQIFPLLVNHLQS----SSYVVHTYAAIAI 370 (370)
T ss_dssp H--HHHHHHHHHHTTS----S-HHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhCC----CCcchhhhhhhhC
Confidence 2 3478999999988 6777888887764
No 268
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=38.88 E-value=6.5e+02 Score=28.84 Aligned_cols=143 Identities=13% Similarity=0.082 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCC
Q 010064 132 EELKIVVKDLQS-----ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIGN 205 (519)
Q Consensus 132 ~~l~~Lv~~L~s-----~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~NLa~~~ 205 (519)
..+.++|..+-+ .|+..|..|--+|..+.--+.++. ..-+|.|+..+. +++|.++.+|.-.|+.+++..
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf 965 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF 965 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence 345666666532 478889999888888443332322 235788988886 799999999999998888742
Q ss_pred hhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHH
Q 010064 206 DLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDAL 285 (519)
Q Consensus 206 ~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~ 285 (519)
.. .++ ..-..|.+-|.+. +..++..+..++.+|-... .+--.|-++.++.+|.. .+..+...|-
T Consensus 966 N~----~~d-e~t~yLyrrL~De---~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~d----eda~Isdmar 1029 (1128)
T COG5098 966 NT----TAD-EHTHYLYRRLGDE---DADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTD----EDAEISDMAR 1029 (1128)
T ss_pred hh----hhH-HHHHHHHHHhcch---hhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccC----CcchHHHHHH
Confidence 11 111 1356777878777 7899999988887765332 22236778888888887 5777888787
Q ss_pred HHHHHhcCCC
Q 010064 286 RALYNLSIFP 295 (519)
Q Consensus 286 ~aL~nLs~~~ 295 (519)
..+..++..+
T Consensus 1030 ~fft~~a~Kd 1039 (1128)
T COG5098 1030 HFFTQIAKKD 1039 (1128)
T ss_pred HHHHHHHhcc
Confidence 8888777544
No 269
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=38.74 E-value=1.6e+02 Score=25.87 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=55.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh-hHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDL-NKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS 247 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~-nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS 247 (519)
++..|-.-|+++++.++..|+.+|-.+..+... ....+.....+.-|+.++.....++..++..++..+...+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 567888888899999999999999999887655 5666666577777999887631127889988887776554
No 270
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=38.25 E-value=2.6e+02 Score=31.63 Aligned_cols=181 Identities=10% Similarity=0.037 Sum_probs=104.7
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC
Q 010064 172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS 251 (519)
Q Consensus 172 ~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~ 251 (519)
..+++|.|++|+++.+..+|..-+.-+-+...+ -...+++.-++|.+..-+.+. ++.+++..+-.+..|+.-=.
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DT---n~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDT---NATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccC---CHHHHHHHHHHHHHHHhhhc
Confidence 356899999999999999887766666655532 445677888999999988887 89999988877776653211
Q ss_pred ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHH
Q 010064 252 NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSN 329 (519)
Q Consensus 252 ~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~n 329 (519)
.+ ..+...+..+-.+-. . ....++.+..-+|.-++.+..... ...-.+.++...+.|+ +.+..++..|+.
T Consensus 402 ~~--~Ln~Ellr~~ar~q~-d---~~~~irtntticlgki~~~l~~~~--R~~vL~~aftralkdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 402 KR--NLNGELLRYLARLQP-D---EHGGIRTNTTICLGKIAPHLAASV--RKRVLASAFTRALKDPFVPARKAGVLALAA 473 (690)
T ss_pred hh--hhcHHHHHHHHhhCc-c---ccCcccccceeeecccccccchhh--hccccchhhhhhhcCCCCCchhhhhHHHhh
Confidence 11 112223333333322 1 455567777777766665432111 1112223334445554 256666666665
Q ss_pred hcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064 330 LVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL 370 (519)
Q Consensus 330 Ls~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L 370 (519)
.....+... +. ...++.++-+.- ..+..++..|-..+
T Consensus 474 t~~~~~~~~-va--~kIlp~l~pl~v-d~e~~vr~~a~~~i 510 (690)
T KOG1243|consen 474 TQEYFDQSE-VA--NKILPSLVPLTV-DPEKTVRDTAEKAI 510 (690)
T ss_pred cccccchhh-hh--hhcccccccccc-CcccchhhHHHHHH
Confidence 554333222 22 236667766665 34555555554443
No 271
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=37.89 E-value=1.5e+02 Score=26.51 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=57.5
Q ss_pred CcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhh-cCCHHHHHHHHHHHHHhhhc
Q 010064 345 DAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTL-LGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 345 g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~-~gs~~~~~~A~~~L~~l~~~ 418 (519)
.++..|..=|. ++++.+|-.|..+|-.+..+ .......+.+.+.+..|+.++. ...+.+++++..+++.-.+.
T Consensus 41 ~a~ral~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLL-SKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 35567777777 57899999998888877765 3455777888899999999987 45778999999999887754
No 272
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=37.62 E-value=58 Score=24.52 Aligned_cols=49 Identities=24% Similarity=0.503 Sum_probs=38.0
Q ss_pred HHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 327 LSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 327 L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
|.-|+.+..+|..+.+ .|+.+.|-++=.|..++.+++.+-.++..|..+
T Consensus 2 LllL~~T~~GR~~lR~-~~vY~IlRe~h~~E~d~~V~e~~erlV~iLird 50 (58)
T PF04064_consen 2 LLLLCATREGREYLRE-KGVYPILRELHKWEEDEEVQEACERLVQILIRD 50 (58)
T ss_pred HhHHhccHHHHHHHHH-cCchHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 4557888899999999 688887777766677888888877777766655
No 273
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=37.49 E-value=2.3e+02 Score=23.82 Aligned_cols=70 Identities=9% Similarity=-0.026 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhc------CCCHHHHHHHHHHHHHh
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLD------FQLADSQISSLYALLNL 201 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~------s~~~~~~~~a~~aL~NL 201 (519)
+.+..|.+.|.+.++..+..|+..|..|.+.- ..+...+....++..++.+.. ..+..++..+...+...
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 34788888999999999999999999998764 467777777666666655311 13567788777766544
No 274
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=36.99 E-value=42 Score=28.63 Aligned_cols=41 Identities=34% Similarity=0.460 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHH
Q 010064 150 REAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQ 191 (519)
Q Consensus 150 ~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~ 191 (519)
-.++..+..|+. .|+.-..+++.|+++.|+.+|.+++.++.
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 345677777884 56777788899999999999999887653
No 275
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=36.46 E-value=2.9e+02 Score=30.87 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=66.4
Q ss_pred CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCccc
Q 010064 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEG 336 (519)
Q Consensus 259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~ 336 (519)
.|.+..++.-+.+ .+..++..++..|+.++..-..+...+-+|.+..|..-+-|. -++..|+.+|+.+-....+
T Consensus 90 ~~~~~h~lRg~es----kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 90 AGTFYHLLRGTES----KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHhcccC----cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3455666666665 688999999999999987776777777788888888766443 3888999998877542221
Q ss_pred HHHHhhcCCcchhhhhhccCCCCHHHHHHH
Q 010064 337 RKAISRVPDAFPILVDVLNWTDSPGCQEKA 366 (519)
Q Consensus 337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A 366 (519)
-+.. ....|+.+++...+.+++..|
T Consensus 166 een~-----~~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 166 EENR-----IVNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred hHHH-----HHHHHHHHHhcCcHHHHHHHH
Confidence 1111 122566666655556666544
No 276
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=35.49 E-value=1.7e+02 Score=26.06 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=56.8
Q ss_pred cchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhc------CCHHHHHHHHHHHHHhhhc
Q 010064 346 AFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLL------GSTLAQKRASRILECLRVD 418 (519)
Q Consensus 346 ~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~------gs~~~~~~A~~~L~~l~~~ 418 (519)
++..|..-|. +.++.++-.|..+|-.+... .......+...+.+.-|+.++.. ..+.++.+...+++.-.+.
T Consensus 39 a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5556777777 67899999999988888764 34567788888999999999963 4679999999988887753
No 277
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=35.18 E-value=4.2e+02 Score=25.60 Aligned_cols=124 Identities=16% Similarity=0.041 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHcccCCh-hhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGE-AASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e-~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv 180 (519)
++.+...+..|-.++.++ .+...+ ++.+..+...+..+.+.-+.+.+..+.+.++..- +.+..++
T Consensus 15 ~~~~~~~L~~L~~l~~~~~~~~~~v--------~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L 80 (234)
T PF12530_consen 15 PELQLPLLEALPSLACHKNVCVPPV--------LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLL 80 (234)
T ss_pred hHHHHHHHHHHHHHhccCccchhHH--------HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHH
Confidence 455666666777776655 333322 5566666666666666667777777776543222 3444444
Q ss_pred Hhh--c--------CCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhc
Q 010064 181 GML--D--------FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLI-ESPVAPNPSVSEAIVANFLGLS 247 (519)
Q Consensus 181 ~lL--~--------s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL-~s~~~~~~~~~~~a~~aL~~LS 247 (519)
..+ + ....+.....+.++..++...+. .....++.+..++ +.. ++..+..++.+|..|.
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~---~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSC---DEVAQALALEALAPLC 150 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHH
Confidence 441 1 12345566667788888886444 2334678888888 555 5666777776676665
No 278
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=34.56 E-value=4.5e+02 Score=26.06 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=46.3
Q ss_pred cHHHHhhcCCcchhhhhhcc------CC----CCHHHHHHHHHHHHHHhcCCh----------------hhHHHHHHcCc
Q 010064 336 GRKAISRVPDAFPILVDVLN------WT----DSPGCQEKASYVLMVMAHKSY----------------GDRQAMIEAGI 389 (519)
Q Consensus 336 ~r~~i~~~~g~i~~Lv~lL~------~s----~~~~~qe~A~~~L~nL~~~~~----------------~~~~~i~~~G~ 389 (519)
.+.++.+ .+++..++.++. +. .+..+.+.....+.|+.+-++ .....+.+.|+
T Consensus 101 yK~afl~-~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v 179 (266)
T PF04821_consen 101 YKEAFLD-PRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGV 179 (266)
T ss_pred HHHHHcc-cHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCH
Confidence 4455555 566776666552 11 123456778888888877522 11234557899
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHHHHHhh
Q 010064 390 ASALLELTLLG-STLAQKRASRILECLR 416 (519)
Q Consensus 390 i~~Ll~Ll~~g-s~~~~~~A~~~L~~l~ 416 (519)
...|+.+..+. ...-..-...++.+|-
T Consensus 180 ~~lLL~l~s~~~~~~f~~~lLEIi~ll~ 207 (266)
T PF04821_consen 180 LDLLLTLASSPQESDFNLLLLEIIYLLF 207 (266)
T ss_pred HHHHHHHHhCccccchhhHHHHHHHHHH
Confidence 99999998875 2233333444444444
No 279
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=33.48 E-value=5.5e+02 Score=26.38 Aligned_cols=201 Identities=13% Similarity=0.095 Sum_probs=126.1
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHH---HHHhc--CcHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064 170 LAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKA---AIVKA--GAVHKMLKLIESPVAPNPSVSEAIVANFL 244 (519)
Q Consensus 170 l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~---~iv~a--G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~ 244 (519)
+-++|.+..|+..|...+-+.+..++.+.-|+-...-..+- ..+.+ .++..|+.--.. .+++.-.+...|.
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~----~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN----TPEIALTCGNMLR 150 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc----chHHHHHHHHHHH
Confidence 44678999999999888888888888888877643222222 22222 344444444111 1343333334444
Q ss_pred HhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcC---cHHH-HHHHcCCHH-
Q 010064 245 GLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETD---LIRY-LLEMLGDME- 318 (519)
Q Consensus 245 ~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g---~v~~-Lv~lL~~~~- 318 (519)
.....+.....|..+.-...-...++. ...++..+|..+...+..... .+..++..+ ..+. --.++.+..
T Consensus 151 Ecirhe~LakiiL~s~~~~~FF~~vq~----p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Ny 226 (342)
T KOG1566|consen 151 ECIRHEFLAKIILESTNFEKFFLYVQL----PNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENY 226 (342)
T ss_pred HHHhhHHHHHHHHcchhHHHHHHHHhc----cchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccce
Confidence 444444455556666666666666666 678999999999988875543 444444433 2333 333445555
Q ss_pred -HHHHHHHHHHHhcCCcccHHHHh---hcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh
Q 010064 319 -LSERILSILSNLVSTPEGRKAIS---RVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG 379 (519)
Q Consensus 319 -v~~~Al~~L~nLs~~~e~r~~i~---~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~ 379 (519)
++..++..|+.+-....+...+. ..+..+..+..+|. ..+..+|-+|-.+.....+.+.+
T Consensus 227 vtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llr-dkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 227 VTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLR-DKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred ehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhh-CccccchHHHHHHHHHHhcCCCC
Confidence 67789999999887655555443 22567778888888 56788998998888877776443
No 280
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.47 E-value=2.8e+02 Score=28.39 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=80.6
Q ss_pred ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-Cccc
Q 010064 261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEG 336 (519)
Q Consensus 261 ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~ 336 (519)
++...+..|.+ .+-....+++-.+..|+.... .....+ ...+-.+++-++++. +...|+.++.-|.. ....
T Consensus 89 al~~~l~~L~s----~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~ 163 (334)
T KOG2933|consen 89 ALKQALKKLSS----DDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS 163 (334)
T ss_pred HHHHHHHHhch----HHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555665 577778888888888886543 211111 134445555566553 88889999998887 3333
Q ss_pred HHHHhhcCCcchhhhh-hccCC--CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 010064 337 RKAISRVPDAFPILVD-VLNWT--DSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILE 413 (519)
Q Consensus 337 r~~i~~~~g~i~~Lv~-lL~~s--~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~ 413 (519)
.....+ .++. ++... ++.-+++.|-.+|..|...-. . .-+++.|+..+.+..+.++..++...-
T Consensus 164 i~~~ld------~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt--p-----~~~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 164 IDQELD------DLVTQLLHKASQDNRFVREDAEKALVAMVNHVT--P-----QKLLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred HHHHHH------HHHHHHHhhhcccchHHHHHHHHHHHHHHhccC--h-----HHHHHHHHHHHhhhchhhhhhhhcccc
Confidence 333333 3333 33322 355688999999988886511 1 124566677777777777766554433
No 281
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.17 E-value=2.8e+02 Score=34.36 Aligned_cols=105 Identities=22% Similarity=0.236 Sum_probs=66.0
Q ss_pred CcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH
Q 010064 305 DLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR 381 (519)
Q Consensus 305 g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~ 381 (519)
+.+..++..|+.+. ++.+|+.||.+++. ++.... . +.+-..+..=+. ..+..+++.|+.+++......++..
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~-~dvq~~Vh~R~~-DssasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---R-PDVQEAVHGRLN-DSSASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---C-HHHHHHHHHhhc-cchhHHHHHHHHHHhhhhhccHHHH
Confidence 45566667776543 89999999999987 332111 1 122223333333 3467899999999997666545533
Q ss_pred HHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 010064 382 QAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK 419 (519)
Q Consensus 382 ~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~ 419 (519)
.... ..+.+=+.+.+.-+|+|+-++|+-+++..
T Consensus 891 ~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 891 FQYY-----DQIIERILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred HHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhC
Confidence 3222 23344445667888999999999888653
No 282
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=32.84 E-value=2.2e+02 Score=28.54 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=48.8
Q ss_pred cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChh--hhhhCCChHHHHHHhhcCC--------CCCCHHHHHHHHH
Q 010064 217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKP--IIGSSGAVPFLVKTLKNSD--------KKVSPQAKQDALR 286 (519)
Q Consensus 217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~--~I~~~gai~~LV~lL~~~~--------~~~~~~~~~~A~~ 286 (519)
++|.++.++++. ++..+..++.+|..+...-.... .+.+.|..+.+-..+.... ...+..+...+.-
T Consensus 120 iiP~iL~llDD~---~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~ 196 (282)
T PF10521_consen 120 IIPPILNLLDDY---SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP 196 (282)
T ss_pred HHhhHHHHhcCC---CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence 689999999998 78999999888888765433322 3456776665555443221 0245667777777
Q ss_pred HHHHhc
Q 010064 287 ALYNLS 292 (519)
Q Consensus 287 aL~nLs 292 (519)
+|..|.
T Consensus 197 ~L~~L~ 202 (282)
T PF10521_consen 197 ALLSLL 202 (282)
T ss_pred HHHHHH
Confidence 777773
No 283
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=32.23 E-value=3.5e+02 Score=24.09 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=57.1
Q ss_pred chhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHH-HHHhhcC---CCHHHHHHHHHHHHHhc
Q 010064 129 EALEELKIVVKDLQS-ESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPP-LAGMLDF---QLADSQISSLYALLNLG 202 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~-Lv~lL~s---~~~~~~~~a~~aL~NLa 202 (519)
+..+.++.|-+.|.. .++.++..|+..|-.+.+.- ......++..+++.. |+.++.. .+..++...+..+...+
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 344558888888874 58888999998888888663 467777888889987 9999963 34578888888887776
Q ss_pred C
Q 010064 203 I 203 (519)
Q Consensus 203 ~ 203 (519)
.
T Consensus 115 ~ 115 (141)
T cd03565 115 D 115 (141)
T ss_pred H
Confidence 4
No 284
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=32.15 E-value=1.9e+02 Score=21.79 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=38.9
Q ss_pred HHHHhcCChhhHHHHHHcCcHHHHHHHhhc-CCHHHHHHHHHHHHHhhhcC
Q 010064 370 LMVMAHKSYGDRQAMIEAGIASALLELTLL-GSTLAQKRASRILECLRVDK 419 (519)
Q Consensus 370 L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~-gs~~~~~~A~~~L~~l~~~~ 419 (519)
|.-||.. ...|+.+.+.|+-+.|-++-.. .++.++...-++.+.|..+.
T Consensus 2 LllL~~T-~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE 51 (58)
T PF04064_consen 2 LLLLCAT-REGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDE 51 (58)
T ss_pred HhHHhcc-HHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 4456665 6679999999999988887774 58999999999999988553
No 285
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=32.05 E-value=3.9e+02 Score=27.29 Aligned_cols=146 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHhcCC---CHHHHHHHHHHHHHHhccChhhHHHHHhc-----------CCHHHHHHhhc------CCCHHHHHHHHH
Q 010064 137 VVKDLQSE---SEEQRREAASKVRSLAKENSETRVTLAML-----------GAIPPLAGMLD------FQLADSQISSLY 196 (519)
Q Consensus 137 Lv~~L~s~---~~~~~~~Aa~~L~~La~~~~~~r~~l~~~-----------G~i~~Lv~lL~------s~~~~~~~~a~~ 196 (519)
|.-.|... ..+.|..|+.++.....++++.+..+... .....|+..|- +.++--..-|+.
T Consensus 40 L~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~ 119 (312)
T PF04869_consen 40 LNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAV 119 (312)
T ss_dssp HHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHH
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHH
Q ss_pred HHHHhcCCChhhHHHHHhc--C--------------cHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhccCCCC--hhhhh
Q 010064 197 ALLNLGIGNDLNKAAIVKA--G--------------AVHKMLKLIE-SPVAPNPSVSEAIVANFLGLSALDSN--KPIIG 257 (519)
Q Consensus 197 aL~NLa~~~~~nk~~iv~a--G--------------~v~~Lv~lL~-s~~~~~~~~~~~a~~aL~~LS~~~~~--k~~I~ 257 (519)
+|..+..+++..|+.+.+. | +...|+.-+. +. ++.++-.-+..|..-...... +.-+.
T Consensus 120 il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~---d~ri~igyL~LL~~WL~e~p~AV~~FL~ 196 (312)
T PF04869_consen 120 ILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNS---DPRIQIGYLMLLIVWLFECPDAVNDFLS 196 (312)
T ss_dssp HHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T-----HHHHHHHHHHHHHHHTT-HHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCC---chhHHHHHHHHHHHHHhCCHHHHHHHHc
Q ss_pred hCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 258 SSGAVPFLVKTLKNSDKKVSPQAKQDALRAL 288 (519)
Q Consensus 258 ~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL 288 (519)
+...++.|+...... .+.+.....+.|+
T Consensus 197 ~~s~l~~Li~~~~~~---~~~~~~VqGL~A~ 224 (312)
T PF04869_consen 197 EGSNLQSLIEFSNQS---SSEDVLVQGLCAF 224 (312)
T ss_dssp STTHHHHHHHHHS-----TCCCHHHHHHHHH
T ss_pred CcchHHHHHHHhhcC---CCCcchHHHHHHH
No 286
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.89 E-value=49 Score=34.25 Aligned_cols=63 Identities=16% Similarity=-0.064 Sum_probs=53.4
Q ss_pred HHHHHHHHhccChhhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHhcCCChhhHHHHHh
Q 010064 152 AASKVRSLAKENSETRVTLAMLGAIPPLAGML--DFQLADSQISSLYALLNLGIGNDLNKAAIVK 214 (519)
Q Consensus 152 Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL--~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~ 214 (519)
..+.|.+|+...+++.+.+.+.|+++.++.-. +..+|-+++-...++.+|..+|.+|+..|.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 44688889988889999999999999887644 4567889999999999999999999877754
No 287
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=31.72 E-value=4.3e+02 Score=24.59 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENS-ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL 207 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~-~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~ 207 (519)
.++.+++...+.+...+..|+..|....+.-- .-. -++|.|+.+..++++.++..|...+..+....+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 46778887788999999999999988665431 112 2689999999999999999999999999875333
No 288
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=31.55 E-value=1e+03 Score=29.80 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA 211 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~ 211 (519)
..+..++..|.++...+|..|+++|..+...++.... ...+-..+-.=+...+..++++|+..++......++.-..
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 4477788888888889999999999999977764432 1122233333334467889999999998666543443222
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS 251 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~ 251 (519)
+ -..+..-+.+. ...++..++.++..+....+
T Consensus 893 y-----Y~~i~erIlDt---gvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 893 Y-----YDQIIERILDT---GVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred H-----HHHHHhhcCCC---chhHHHHHHHHHHHHHHhCC
Confidence 2 22333433444 57788888887777664443
No 289
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=31.47 E-value=2.6e+02 Score=24.62 Aligned_cols=107 Identities=18% Similarity=0.167 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-hhhHHH
Q 010064 134 LKIVVKDLQSES-EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGN-DLNKAA 211 (519)
Q Consensus 134 l~~Lv~~L~s~~-~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~-~~nk~~ 211 (519)
+..+|....++. .+.-......|+.+...++..-. .++..|-+-|.+.++.++..|+..|-.+..+. +.....
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~k-----ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~e 80 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLILEICDLINSSPDGAK-----EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHRE 80 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHH-----HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 445555554331 12223344445554433322221 25677888888999999999999998888765 344666
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHH--HHHHHHHHHHHh
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPS--VSEAIVANFLGL 246 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~--~~~~a~~aL~~L 246 (519)
+.....+..|..++.+... ... +++.+...|...
T Consensus 81 v~~~~fl~~l~~l~~~~~~-~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 81 VASKEFLDELVKLIKSKKT-DPETPVKEKILELLQEW 116 (140)
T ss_dssp HTSHHHHHHHHHHHHHTTT-HHHSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHccCCC-CchhHHHHHHHHHHHHH
Confidence 6667788999998876532 222 788777666443
No 290
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=30.67 E-value=1.1e+02 Score=31.35 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHhcC--cHHHHHHHcCC-----HHHHHHHHHHHHHhcCCcccHHHHh
Q 010064 279 QAKQDALRALYNLSIFPSNISFILETD--LIRYLLEMLGD-----MELSERILSILSNLVSTPEGRKAIS 341 (519)
Q Consensus 279 ~~~~~A~~aL~nLs~~~~n~~~l~~~g--~v~~Lv~lL~~-----~~v~~~Al~~L~nLs~~~e~r~~i~ 341 (519)
.++..|+..|.++...+.....++..+ .+..|+.++.. .+++..|+.+|..|+........++
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 345556666666666666777888776 99999999953 3489999999999988544344443
No 291
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=30.20 E-value=3.7e+02 Score=30.92 Aligned_cols=62 Identities=21% Similarity=0.388 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHh
Q 010064 276 VSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAIS 341 (519)
Q Consensus 276 ~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~ 341 (519)
.=..++..++.++++|.++..... ...+..||+-|++++ +...|...|.+|.. +|.-+..++
T Consensus 316 ~L~~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi 380 (988)
T KOG2038|consen 316 PLEEVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVI 380 (988)
T ss_pred cHHHHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehH
Confidence 567889999999999988765332 234567888888886 88899999999987 666554444
No 292
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.20 E-value=3.3e+02 Score=31.01 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 186 QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS 247 (519)
Q Consensus 186 ~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS 247 (519)
..+..+..++..|+.+....+..--.|.+...++.|+++|+... +..+...|+-+|.-|-
T Consensus 80 ~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~--~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 80 VKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDT--SITVVSSALLVLIMLL 139 (668)
T ss_pred cCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcc--cHHHHHHHHHHHHHHh
Confidence 35678899999999999988888999999999999999998763 4555666655555544
No 293
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=28.07 E-value=6e+02 Score=25.17 Aligned_cols=213 Identities=16% Similarity=0.146 Sum_probs=115.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHHHHhcC
Q 010064 139 KDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAAIVKAG 216 (519)
Q Consensus 139 ~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG 216 (519)
..|.+++...|..|...|......-+... + ...-+..|+.+.-+ .|......++.+|..|.....-.... ...
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L-~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~~~ 80 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF--L-SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--AVK 80 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh--c-cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--HHH
Confidence 35778899999999999888654432221 1 12235667666643 55555555566666666421111111 011
Q ss_pred cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC
Q 010064 217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF 294 (519)
Q Consensus 217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~ 294 (519)
++..+.+...-+. .....+..+-.+|..|..+ ....+.. .+.+..+++++... .+|.....+...+..+...
T Consensus 81 i~~~l~~~~~~q~-~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gE---kDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 81 ILRSLFQNVDVQS-LPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGE---KDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred HHHHHHHhCChhh-hhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHh
Confidence 2223332211110 0234455555556555533 3333332 45677777777764 8999999999888877643
Q ss_pred CccHHHHHhcCcHHHHHHHc------------CCH-H-HHHH-HHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCC
Q 010064 295 PSNISFILETDLIRYLLEML------------GDM-E-LSER-ILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDS 359 (519)
Q Consensus 295 ~~n~~~l~~~g~v~~Lv~lL------------~~~-~-v~~~-Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~ 359 (519)
=+. ....+.|...+ +|+ . ..+. .......|++++. +. +-++|.|++=|. ++.
T Consensus 155 ~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~----fa--~~~~p~LleKL~-s~~ 221 (262)
T PF14500_consen 155 FDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL----FA--PFAFPLLLEKLD-STS 221 (262)
T ss_pred ccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh----hH--HHHHHHHHHHHc-CCC
Confidence 321 23334444444 122 1 1222 2222333444432 22 348889999998 667
Q ss_pred HHHHHHHHHHHHHHhc
Q 010064 360 PGCQEKASYVLMVMAH 375 (519)
Q Consensus 360 ~~~qe~A~~~L~nL~~ 375 (519)
+.++..+..+|...+.
T Consensus 222 ~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 222 PSVKLDSLQTLKACIE 237 (262)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 8888888888877654
No 294
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=28.04 E-value=2.6e+02 Score=24.54 Aligned_cols=72 Identities=15% Similarity=0.101 Sum_probs=53.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-hhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGN-DLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS 247 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~-~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS 247 (519)
++..|-+=|+++++.++..|+..|-.+..++ ......+.....+..|..++..... .+.++..++..+..-+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~-~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP-LPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHHH
Confidence 4567778888899999999999998888764 3456677777889999999887643 3337887777665543
No 295
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=27.87 E-value=1e+03 Score=27.64 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=113.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
+..++..+++.-.-.|..|+..+..+. . +.++.-.-..+.+....++++++-.++..|+.||.-+-.+ ++.-..+-
T Consensus 462 v~hv~P~f~s~ygfL~Srace~is~~e-e--Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~-~q~h~k~s 537 (970)
T COG5656 462 VNHVIPAFRSNYGFLKSRACEFISTIE-E--DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN-EQSHEKFS 537 (970)
T ss_pred HHHhhHhhcCcccchHHHHHHHHHHHH-H--hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc-hhhhHHHH
Confidence 556666667777778888999988884 2 3343333344667777888888888999999999888885 43333333
Q ss_pred hc--CcHHHHHHhhcCCCCCCHHHHHHHHHHHH-HhccC-CCChhhhhh---CCChHHHHHHhhcCC--CCCCHHHHHHH
Q 010064 214 KA--GAVHKMLKLIESPVAPNPSVSEAIVANFL-GLSAL-DSNKPIIGS---SGAVPFLVKTLKNSD--KKVSPQAKQDA 284 (519)
Q Consensus 214 ~a--G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~-~LS~~-~~~k~~I~~---~gai~~LV~lL~~~~--~~~~~~~~~~A 284 (519)
+. +.++.|+.+-..- +.+....+.-.+. ..+.. .+....++. ...++....++.+.. .....+-+..|
T Consensus 538 ahVp~tmekLLsLSn~f---eiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaa 614 (970)
T COG5656 538 AHVPETMEKLLSLSNTF---EIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAA 614 (970)
T ss_pred hhhhHHHHHHHHhcccc---cchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 22 3344444443332 2333222221111 11110 011111111 223333344444320 00112345556
Q ss_pred HHHHHHhcC---CCccHHHHHh---cCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccC
Q 010064 285 LRALYNLSI---FPSNISFILE---TDLIRYLLEMLGD--MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNW 356 (519)
Q Consensus 285 ~~aL~nLs~---~~~n~~~l~~---~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~ 356 (519)
...|..+.+ +-+|++.++. ....|..--+|++ .++-.+|+.+|-+.+-.......+. -|.+..|.+++..
T Consensus 615 sGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pim--wgi~Ell~~~l~~ 692 (970)
T COG5656 615 SGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIM--WGIFELLLNLLID 692 (970)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhh--hHHHHHHHhcccc
Confidence 666555432 3344443332 2222322223332 2466677777776654211111111 2455566666653
Q ss_pred CCCHHHHHHHHHHHHHHhc
Q 010064 357 TDSPGCQEKASYVLMVMAH 375 (519)
Q Consensus 357 s~~~~~qe~A~~~L~nL~~ 375 (519)
......-+.+.-++.|+..
T Consensus 693 ~~t~~y~ee~~~al~nfit 711 (970)
T COG5656 693 EITAVYSEEVADALDNFIT 711 (970)
T ss_pred cchhhhHHHHHHHHHHHHH
Confidence 3333445566666666543
No 296
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=27.51 E-value=5.2e+02 Score=24.21 Aligned_cols=110 Identities=19% Similarity=0.140 Sum_probs=65.0
Q ss_pred ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHh-----cCcHH---------------HHHHHcC---CH
Q 010064 261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILE-----TDLIR---------------YLLEMLG---DM 317 (519)
Q Consensus 261 ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~-----~g~v~---------------~Lv~lL~---~~ 317 (519)
.-+.|+..+..+ .+++++..|+.+|..|-.+...--...+ .+..- .|+..|. +.
T Consensus 40 ~~~sLlt~il~D---p~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~ 116 (182)
T PF13251_consen 40 ATPSLLTCILKD---PSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSP 116 (182)
T ss_pred CCcchhHHHHcC---CchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 444555544443 7999999999999998776531111111 11111 1222232 23
Q ss_pred HHHHHHHHHHHHhcC---CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 318 ELSERILSILSNLVS---TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 318 ~v~~~Al~~L~nLs~---~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
.+....+.+|..|.. +...+..+.. .++..+..++. +.++.++..+..++..|..-
T Consensus 117 ~~l~q~lK~la~Lv~~tPY~rL~~~ll~--~~v~~v~~~l~-~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 117 PVLTQLLKCLAVLVQATPYHRLPPGLLT--EVVTQVRPLLR-HRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHHccCChhhcCHhHHH--HHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcC
Confidence 466688888888887 3333333433 25556666666 46788888888888777653
No 297
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=27.23 E-value=3.1e+02 Score=32.51 Aligned_cols=126 Identities=11% Similarity=0.102 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhc
Q 010064 148 QRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIE 226 (519)
Q Consensus 148 ~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~ 226 (519)
++..+...|.++|-.+...... .+|.|++-|+- +...++-+..-+++.+|.+ -..+++. .+|.+...|+
T Consensus 947 vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~----YTam~d~-YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSS----YTAMTDR-YIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHH----HHHHHHH-hhHHHHHHhc
Confidence 4455667777777554333332 47899988865 5566777777788888774 2233343 7899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064 227 SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293 (519)
Q Consensus 227 s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~ 293 (519)
++ ++-++..+.-.|.+|-.-+-.|. -..-.+.++..++.+ +++++..|=..+..+..
T Consensus 1017 Dp---~~iVRrqt~ilL~rLLq~~~vKw--~G~Lf~Rf~l~l~D~-----~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1017 DP---SVIVRRQTIILLARLLQFGIVKW--NGELFIRFMLALLDA-----NEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred Cc---hHHHHHHHHHHHHHHHhhhhhhc--chhhHHHHHHHHccc-----CHHHHHHHHHHHHHHHh
Confidence 98 88999988877777764332111 012256677777765 66677766666655543
No 298
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=27.18 E-value=2.6e+02 Score=24.41 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHh-cCCHHHHHHhhcCC--------CHHHHHHHHHHHHHh
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKE-NSETRVTLAM-LGAIPPLAGMLDFQ--------LADSQISSLYALLNL 201 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~-~~~~r~~l~~-~G~i~~Lv~lL~s~--------~~~~~~~a~~aL~NL 201 (519)
+.+..|.+.|+..++.+|..+++.|..|+.. ++.++..+.+ ...|..+..+=-.. +..++..|-.++..|
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 3478899999998999999999999998865 4466666655 44555555543312 234666555555444
No 299
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=26.23 E-value=3.9e+02 Score=27.38 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHhcC--cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhh-------hCCC
Q 010064 191 QISSLYALLNLGIGNDLNKAAIVKAG--AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIG-------SSGA 261 (519)
Q Consensus 191 ~~~a~~aL~NLa~~~~~nk~~iv~aG--~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~-------~~ga 261 (519)
+..|...|..+.. +......++..+ .+.-|+++++.+......++..|..+|-.++........|. ..|.
T Consensus 239 RllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 239 RLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 4445555655555 477777888776 99999999987644467888999999988887654333322 3566
Q ss_pred hHHHHHH
Q 010064 262 VPFLVKT 268 (519)
Q Consensus 262 i~~LV~l 268 (519)
++.+++-
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 7666653
No 300
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=25.67 E-value=5.3e+02 Score=26.64 Aligned_cols=148 Identities=13% Similarity=0.029 Sum_probs=76.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC------C-CHHHHHHHHHHHHHhcC
Q 010064 131 LEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF------Q-LADSQISSLYALLNLGI 203 (519)
Q Consensus 131 ~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s------~-~~~~~~~a~~aL~NLa~ 203 (519)
...+..+.+.+...+...+..|+..| . .|+.... .+|.++.++.. . +..........+..|..
T Consensus 177 q~yf~~It~a~~~~~~~~r~~aL~sL---~-tD~gl~~------LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~ 246 (343)
T cd08050 177 QLYFEEITEALVGSNEEKRREALQSL---R-TDPGLQQ------LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD 246 (343)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHh---c-cCCCchh------hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc
Confidence 34456666666666666666665554 3 2222222 56778877754 2 55666667777777777
Q ss_pred CChhhHHHHHhcCcHHHHHHhhcCCC-------CCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCC
Q 010064 204 GNDLNKAAIVKAGAVHKMLKLIESPV-------APNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKV 276 (519)
Q Consensus 204 ~~~~nk~~iv~aG~v~~Lv~lL~s~~-------~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~ 276 (519)
+ +.-.....=.-.+|.++.++-... ..+-.+++.|+..|..+...-.....-...-.+..|.+.|.+. ..
T Consensus 247 N-~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~--~~ 323 (343)
T cd08050 247 N-PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDP--KK 323 (343)
T ss_pred C-CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCC--CC
Confidence 3 443222222237888887662210 0135778888887777663211111111222244555555542 22
Q ss_pred CHHHHHHHHHHHHHh
Q 010064 277 SPQAKQDALRALYNL 291 (519)
Q Consensus 277 ~~~~~~~A~~aL~nL 291 (519)
.....-=|+..|..|
T Consensus 324 ~~~~~YGAi~GL~~l 338 (343)
T cd08050 324 PLTTHYGAIVGLSAL 338 (343)
T ss_pred CcchhhHHHHHHHHh
Confidence 333344455555544
No 301
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=25.23 E-value=32 Score=37.12 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=48.2
Q ss_pred hhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHH-HHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 348 PILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAM-IEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 348 ~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i-~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
..+.+.+....++.++++|..++.|++.+.+ +|... -....-..+++++...-+++-+.+.++|+.+-+
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~-~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLE-NRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheeccc-ccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3444555446789999999999999998843 44433 344555667888888877777777777766553
No 302
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.01 E-value=6.2e+02 Score=29.63 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=54.9
Q ss_pred CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC------ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 344 PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK------SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 344 ~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~------~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
...++.+++++..+..+.+|..|...|+.++.. +....+.+.....|..|+.....+....-.-+..+..+++
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ 267 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLIS 267 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHH
Confidence 578999999998667789999999999999875 2345667777888888888888765544444555555555
No 303
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=24.96 E-value=1.4e+02 Score=30.10 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=41.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC--------------hhhHHHHHhcCcHHHHHHhhcCC
Q 010064 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGN--------------DLNKAAIVKAGAVHKMLKLIESP 228 (519)
Q Consensus 174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~--------------~~nk~~iv~aG~v~~Lv~lL~s~ 228 (519)
..+..++.-|.+.+...+..|+.+|+.++.|. ..|-..+.++|+++.|+.+|+..
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~ 128 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMF 128 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35678888888888888899999999998653 23555677888888888887653
No 304
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=24.83 E-value=3.3e+02 Score=25.55 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCh
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGND 206 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~ 206 (519)
++.+++-|.+....-+..|...+..|.......+..-.-.-.|.+|-.-|.+.++++...++.+|..|+..++
T Consensus 40 Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 40 LPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 6777777777777777888888888765521222211113356666677778999999999999999976433
No 305
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=23.98 E-value=1.3e+02 Score=26.12 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=45.3
Q ss_pred ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHH
Q 010064 261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSIL 327 (519)
Q Consensus 261 ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L 327 (519)
.+..+.+++..............++.++...... -....+.+...++.+..+|.++++++.|+.+|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~-~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISW-IPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT-S-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh-CCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3555555555520001177888899999888763 24455666789999999998888888888775
No 306
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.39 E-value=3.8e+02 Score=23.38 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=47.9
Q ss_pred hhhhhccCCCCHHHHHHHHHHHHHHhcCChh-hHHHHH-HcCcHHHHHHHhhc-----C---CHHHHHHHHHHHHHhhhc
Q 010064 349 ILVDVLNWTDSPGCQEKASYVLMVMAHKSYG-DRQAMI-EAGIASALLELTLL-----G---STLAQKRASRILECLRVD 418 (519)
Q Consensus 349 ~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~-~~~~i~-~~G~i~~Ll~Ll~~-----g---s~~~~~~A~~~L~~l~~~ 418 (519)
.|..=|+ ..++.++-.+..+|-.||...++ .+..+. ..-+|..+.+.-.. | ...++..|..++..+..+
T Consensus 42 ~L~kRL~-~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 42 YLLKRLK-RSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred HHHHHhc-CCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhcc
Confidence 5666677 46799999999999999986444 344333 34566776666552 2 246888899999887643
No 307
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=22.92 E-value=8.4e+02 Score=25.08 Aligned_cols=198 Identities=14% Similarity=0.182 Sum_probs=127.8
Q ss_pred hcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcC-C-CHHHHHHHHHHHHHhc
Q 010064 127 KEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM--LGAIPPLAGMLDF-Q-LADSQISSLYALLNLG 202 (519)
Q Consensus 127 ~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~--~G~i~~Lv~lL~s-~-~~~~~~~a~~aL~NLa 202 (519)
+++. +..+++.|...+.+.+..++....++-+.....|....+ .--.+.+-.+++. . .+++-..+-..|....
T Consensus 77 ~~~~---l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 77 NADV---LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECI 153 (342)
T ss_pred hCCc---hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 4455 788888888888888888888887777665444433322 0112222233332 2 3666666666666666
Q ss_pred CCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-C-hhhhhh-C-CChHH-HHHHhhcCCCCCC
Q 010064 203 IGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-N-KPIIGS-S-GAVPF-LVKTLKNSDKKVS 277 (519)
Q Consensus 203 ~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~-k~~I~~-~-gai~~-LV~lL~~~~~~~~ 277 (519)
.+ +.-.+.|.+..-+......++.+ +=++...|.++...+..... . .+.+.. . -..+- --.++.+ ++
T Consensus 154 rh-e~LakiiL~s~~~~~FF~~vq~p---~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s----~N 225 (342)
T KOG1566|consen 154 RH-EFLAKIILESTNFEKFFLYVQLP---NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRS----EN 225 (342)
T ss_pred hh-HHHHHHHHcchhHHHHHHHHhcc---chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcc----cc
Confidence 64 66666777888888888999888 67888888777777654321 1 222221 1 11232 3345666 79
Q ss_pred HHHHHHHHHHHHHhcCCCccHHH----HHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcc
Q 010064 278 PQAKQDALRALYNLSIFPSNISF----ILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPE 335 (519)
Q Consensus 278 ~~~~~~A~~aL~nLs~~~~n~~~----l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e 335 (519)
.-++..+..+|..+-.+..|-.. +.+-..+..+..+|.++ .++-+|-.+.+-.+.++.
T Consensus 226 yvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 226 YVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred eehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99999999999998877665433 33346778888888665 488889888888777554
No 308
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.80 E-value=4.2e+02 Score=31.26 Aligned_cols=92 Identities=14% Similarity=-0.013 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH----HhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRS----LAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK 209 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~----La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk 209 (519)
+..-..+|++.+...|.+|+.++.. |+..+...-..+ .-..|.++..+..+++-+...|..+|.+++..+...-
T Consensus 805 l~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv--hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 805 LGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV--HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH--HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 5666777899999999999988875 444332222222 3478999999999999999999999999998766653
Q ss_pred HHHHhcCcHHHHHHhhcC
Q 010064 210 AAIVKAGAVHKMLKLIES 227 (519)
Q Consensus 210 ~~iv~aG~v~~Lv~lL~s 227 (519)
..=+-..++|.|-.+++.
T Consensus 883 ~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334478888766654
No 309
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.05 E-value=43 Score=33.56 Aligned_cols=20 Identities=40% Similarity=0.805 Sum_probs=17.5
Q ss_pred hhhHHhhhhhhhee---ccCCcc
Q 010064 37 SGAAFRRKIFDAVS---CGGSSR 56 (519)
Q Consensus 37 ~~~~~~~~~~~~~~---~~~~~r 56 (519)
|+.+++|-++|++. |||+.|
T Consensus 81 SGTTLMRAmLDAHPdVRCGeETr 103 (378)
T KOG3988|consen 81 SGTTLMRAMLDAHPDVRCGEETR 103 (378)
T ss_pred CchHHHHHHHhcCCCcccCccce
Confidence 78889999999976 998865
No 310
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=21.88 E-value=67 Score=27.45 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHH
Q 010064 321 ERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQ 363 (519)
Q Consensus 321 ~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~q 363 (519)
...+.-|..|+..|+.-..++. .|+++.|+.+|. +.|..+.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~-l~~v~sL~~LL~-HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVE-LGAVPSLLGLLS-HENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHH-cCCHHHHHHHHC-CCCccee
Confidence 3577778889999998889998 799999999998 4565543
No 311
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=21.53 E-value=9.3e+02 Score=25.06 Aligned_cols=132 Identities=19% Similarity=0.142 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHhcC---cHHHHHHHcCC----HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchh
Q 010064 277 SPQAKQDALRALYNLSIFPSNISFILETD---LIRYLLEMLGD----MELSERILSILSNLVSTPEGRKAISRVPDAFPI 349 (519)
Q Consensus 277 ~~~~~~~A~~aL~nLs~~~~n~~~l~~~g---~v~~Lv~lL~~----~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~ 349 (519)
+..+..+|+.+|..+..+++....+-+.- .+...+..+.+ ..+....+++|..=--.+. +.. ...+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~----~~~-~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK----IMT-SDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc----ccc-hhhHHH
Confidence 66788899999999987776444443321 34455555533 2366666666653211211 222 233344
Q ss_pred hhhhcc----CCCCHHHHHHHHHHHHHHhcCChhhHHHHHH-cC-cHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 350 LVDVLN----WTDSPGCQEKASYVLMVMAHKSYGDRQAMIE-AG-IASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 350 Lv~lL~----~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~-~G-~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
++..+. .-++..+..+...++.+|... ..+.|.+ .. .+|.|+..+.+....++.+|..++..+.
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q---~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQ---FPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 444332 123456777788888888854 3344443 33 6888888888888889888888777766
No 312
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.01 E-value=3.6e+02 Score=33.15 Aligned_cols=228 Identities=14% Similarity=0.098 Sum_probs=111.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh-c-CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC
Q 010064 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK-A-GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN 252 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~-a-G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~ 252 (519)
+++.+-.....-....+..+..++.+.+..+...+..|.. . |.+-....+...... ..+++...+-+|.++-..+-.
T Consensus 797 aa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~-~~evr~~sl~~l~silet~ge 875 (1610)
T KOG1848|consen 797 AAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSR-GVEVRISSLEALVSILETVGE 875 (1610)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCc-cceeeHHHHHHHHHHHhccch
Confidence 4444444433333445555566666666655554444442 2 444444444333211 455565556666665533221
Q ss_pred hhhhhhCCChHHHHHHhhcC---CCCCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCcHHHHHHHc---CCHHHHHHHHH
Q 010064 253 KPIIGSSGAVPFLVKTLKNS---DKKVSPQAKQDALRALYNLSIFP-SNISFILETDLIRYLLEML---GDMELSERILS 325 (519)
Q Consensus 253 k~~I~~~gai~~LV~lL~~~---~~~~~~~~~~~A~~aL~nLs~~~-~n~~~l~~~g~v~~Lv~lL---~~~~v~~~Al~ 325 (519)
+. =.| -+.+.+++++. ..+....+.+.+...|.-++.+- ...+.-.-.+.|..++..- .|.++.--|+.
T Consensus 876 ~l---l~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~ 951 (1610)
T KOG1848|consen 876 HL---LHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIG 951 (1610)
T ss_pred hh---ccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence 11 112 34444444321 12234556666777776665431 1122212223444444443 35558888999
Q ss_pred HHHHhcCCcccHHHHhhcCCcchhhhhhccCC-CCHHHHHHHHHHHH--HHhcCChhhHHHHHHcCcHHHHHHHhhcCCH
Q 010064 326 ILSNLVSTPEGRKAISRVPDAFPILVDVLNWT-DSPGCQEKASYVLM--VMAHKSYGDRQAMIEAGIASALLELTLLGST 402 (519)
Q Consensus 326 ~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~--nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~ 402 (519)
.+|+++-+-..+..-....+.-...++.+..+ ....+--+++|++. +|.....+ -..-++.|+++.|.+.+.....
T Consensus 952 lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d-sr~eVRngAvqtlfri~~Shg~ 1030 (1610)
T KOG1848|consen 952 LFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED-SRAEVRNGAVQTLFRIFNSHGS 1030 (1610)
T ss_pred HHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc-chHHHhhhHHHHHHHHHhhhcc
Confidence 99998864333222222134444555555422 23344456666632 23222122 2334567888888888886655
Q ss_pred HHHHHH
Q 010064 403 LAQKRA 408 (519)
Q Consensus 403 ~~~~~A 408 (519)
.....|
T Consensus 1031 ~l~~~a 1036 (1610)
T KOG1848|consen 1031 KLGTNA 1036 (1610)
T ss_pred cCChhH
Confidence 555544
No 313
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.45 E-value=2e+02 Score=24.62 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=31.2
Q ss_pred cchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc
Q 010064 346 AFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEA 387 (519)
Q Consensus 346 ~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~ 387 (519)
+++.|+..|. ..++.+...|..+|...|..+ .+.+.++..
T Consensus 9 ~i~lLv~QL~-D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLY-DPSPEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 5678888897 567899999999999999875 555555543
No 314
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=20.33 E-value=3.6e+02 Score=25.13 Aligned_cols=65 Identities=20% Similarity=0.102 Sum_probs=39.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064 308 RYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA 374 (519)
Q Consensus 308 ~~Lv~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~ 374 (519)
|.|+..|...++.+....+|+.+++.-..---... .+.|+-|.+.+.+ ....-.+.|+.+...|+
T Consensus 6 plLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~-~~~W~eL~d~Ils-~~~~e~~kA~~IF~~L~ 70 (174)
T PF04510_consen 6 PLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQ-EGGWDELSDCILS-LSENEPVKAFHIFICLP 70 (174)
T ss_pred HHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHH-hhccchHHHHHHHHhCC
Confidence 45667776666666666667666653222111124 6889888887763 22333467888888777
Done!