Query 010064
Match_columns 519
No_of_seqs 294 out of 1965
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 19:06:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 6E-32 2E-36 293.3 35.6 368 41-418 12-407 (529)
2 3nmw_A APC variant protein; AR 100.0 5.9E-33 2E-37 286.1 24.1 268 104-379 48-338 (354)
3 3nmz_A APC variant protein; pr 100.0 2.1E-32 7.3E-37 290.4 25.3 310 102-420 96-453 (458)
4 1xm9_A Plakophilin 1; armadill 100.0 1.7E-32 5.7E-37 292.6 23.5 284 134-422 4-365 (457)
5 3nmw_A APC variant protein; AR 100.0 2.2E-32 7.7E-37 281.8 22.9 270 146-424 46-341 (354)
6 3ul1_B Importin subunit alpha- 100.0 5E-31 1.7E-35 284.9 33.1 308 102-418 71-388 (510)
7 4b8j_A Importin subunit alpha- 100.0 2.7E-30 9.1E-35 279.3 35.2 367 39-418 11-401 (528)
8 3l6x_A Catenin delta-1; cateni 100.0 3.3E-31 1.1E-35 287.6 27.3 286 134-423 50-390 (584)
9 1xm9_A Plakophilin 1; armadill 100.0 3.5E-30 1.2E-34 274.6 30.3 314 102-422 16-454 (457)
10 3now_A UNC-45 protein, SD10334 100.0 2.8E-30 9.6E-35 289.1 29.3 305 102-417 393-737 (810)
11 3nmz_A APC variant protein; pr 100.0 1.5E-30 5E-35 276.2 24.8 269 102-378 162-453 (458)
12 3l6x_A Catenin delta-1; cateni 100.0 2.6E-29 8.7E-34 272.8 30.7 311 102-419 62-478 (584)
13 1wa5_B Importin alpha subunit; 100.0 5.2E-28 1.8E-32 261.8 36.1 365 42-418 17-413 (530)
14 3now_A UNC-45 protein, SD10334 100.0 4.7E-30 1.6E-34 287.3 19.6 346 103-481 345-739 (810)
15 3ul1_B Importin subunit alpha- 100.0 9.8E-29 3.4E-33 267.0 28.9 304 102-417 115-430 (510)
16 3tpo_A Importin subunit alpha- 100.0 1.8E-28 6.1E-33 266.0 30.9 304 102-417 134-449 (529)
17 2jdq_A Importin alpha-1 subuni 100.0 4E-26 1.4E-30 240.1 35.2 303 102-418 34-348 (450)
18 4b8j_A Importin subunit alpha- 100.0 1.4E-26 4.9E-31 250.1 31.5 304 102-418 132-444 (528)
19 1jdh_A Beta-catenin; beta-cate 100.0 1.3E-26 4.4E-31 249.1 29.3 306 102-414 74-423 (529)
20 4hxt_A De novo protein OR329; 99.9 2.2E-26 7.6E-31 222.7 25.1 238 174-420 2-244 (252)
21 1jdh_A Beta-catenin; beta-cate 99.9 2.9E-26 1E-30 246.3 27.6 303 102-418 31-340 (529)
22 2jdq_A Importin alpha-1 subuni 99.9 6.5E-26 2.2E-30 238.4 29.6 304 102-418 79-391 (450)
23 4hxt_A De novo protein OR329; 99.9 5.6E-26 1.9E-30 219.9 25.6 237 133-378 3-244 (252)
24 1wa5_B Importin alpha subunit; 99.9 1E-25 3.6E-30 243.7 30.5 305 102-418 145-458 (530)
25 4db8_A Armadillo-repeat protei 99.9 2.3E-26 8E-31 223.8 22.5 234 133-375 13-251 (252)
26 2z6h_A Catenin beta-1, beta-ca 99.9 7.6E-26 2.6E-30 250.9 27.7 303 102-418 28-337 (644)
27 2z6h_A Catenin beta-1, beta-ca 99.9 2.1E-25 7E-30 247.4 28.1 307 102-420 71-385 (644)
28 4db8_A Armadillo-repeat protei 99.9 9.2E-26 3.2E-30 219.6 20.7 235 173-416 11-250 (252)
29 2z6g_A B-catenin; FULL-length, 99.9 1.3E-24 4.6E-29 246.0 29.2 303 102-411 207-553 (780)
30 2z6g_A B-catenin; FULL-length, 99.9 2E-24 6.9E-29 244.6 28.6 306 105-423 336-669 (780)
31 3tt9_A Plakophilin-2; cell adh 99.9 9E-25 3.1E-29 211.4 17.5 196 134-333 10-230 (233)
32 3opb_A SWI5-dependent HO expre 99.9 3.9E-24 1.3E-28 235.7 20.8 339 104-479 310-728 (778)
33 3tt9_A Plakophilin-2; cell adh 99.9 1.5E-24 5.3E-29 209.8 13.4 195 175-376 9-230 (233)
34 3opb_A SWI5-dependent HO expre 99.9 2.9E-22 9.8E-27 220.9 24.5 308 105-417 351-728 (778)
35 4db6_A Armadillo repeat protei 99.9 4.9E-22 1.7E-26 188.0 20.9 195 172-375 10-209 (210)
36 4db6_A Armadillo repeat protei 99.9 5E-22 1.7E-26 187.9 20.9 192 134-332 14-209 (210)
37 1xqr_A HSPBP1 protein; armadil 99.8 4.9E-20 1.7E-24 185.0 21.1 181 146-333 54-239 (296)
38 1xqr_A HSPBP1 protein; armadil 99.8 5.2E-19 1.8E-23 177.5 19.7 184 103-296 55-241 (296)
39 3grl_A General vesicular trans 99.5 4.2E-12 1.5E-16 137.0 26.4 277 130-418 19-343 (651)
40 3grl_A General vesicular trans 99.5 5.7E-12 1.9E-16 136.0 26.6 306 103-418 37-395 (651)
41 1oyz_A Hypothetical protein YI 99.3 1E-10 3.5E-15 115.2 18.0 223 134-417 25-250 (280)
42 3ltm_A Alpha-REP4; protein eng 99.2 5.5E-10 1.9E-14 105.1 19.3 186 173-419 18-205 (211)
43 3ltj_A Alpharep-4; protein eng 99.2 1.8E-09 6.3E-14 100.7 21.4 182 174-416 14-197 (201)
44 3ltm_A Alpha-REP4; protein eng 99.2 6E-10 2E-14 104.9 17.9 186 132-378 19-206 (211)
45 1oyz_A Hypothetical protein YI 99.2 1.5E-09 5E-14 106.8 20.1 199 170-416 19-220 (280)
46 3ltj_A Alpharep-4; protein eng 99.2 1.4E-09 4.7E-14 101.5 18.4 182 132-374 14-197 (201)
47 4fdd_A Transportin-1; heat rep 99.1 1.4E-09 4.8E-14 123.8 16.7 274 129-418 125-430 (852)
48 4fdd_A Transportin-1; heat rep 99.0 3.5E-09 1.2E-13 120.5 17.6 300 102-417 188-512 (852)
49 2vgl_B AP-2 complex subunit be 99.0 3E-08 1E-12 108.5 22.4 277 102-416 100-418 (591)
50 1ibr_B P95, importin beta-1 su 99.0 6E-09 2E-13 108.9 14.9 275 129-419 125-439 (462)
51 4gmo_A Putative uncharacterize 98.9 2E-09 6.8E-14 119.9 11.3 196 134-331 36-257 (684)
52 1b3u_A Protein (protein phosph 98.9 4E-08 1.4E-12 105.8 18.3 259 134-416 128-391 (588)
53 1b3u_A Protein (protein phosph 98.8 9.6E-08 3.3E-12 102.9 19.5 261 134-416 89-352 (588)
54 4gmo_A Putative uncharacterize 98.8 9.5E-09 3.3E-13 114.4 10.0 192 215-416 34-257 (684)
55 2vgl_B AP-2 complex subunit be 98.8 2.6E-07 9E-12 101.0 20.1 256 134-418 51-312 (591)
56 1qgr_A Protein (importin beta 98.6 1.7E-06 5.8E-11 97.8 21.3 273 129-418 125-438 (876)
57 1w63_A Adapter-related protein 98.6 3E-06 1E-10 93.1 22.4 278 102-417 121-414 (618)
58 1w63_A Adapter-related protein 98.5 2.5E-06 8.4E-11 93.8 19.0 252 134-418 109-380 (618)
59 1qgr_A Protein (importin beta 98.5 1.1E-06 3.7E-11 99.5 16.4 278 131-418 171-480 (876)
60 2bpt_A Importin beta-1 subunit 98.5 1.3E-06 4.4E-11 98.6 15.6 270 134-417 371-668 (861)
61 2bpt_A Importin beta-1 subunit 98.4 7.7E-06 2.6E-10 92.2 20.9 273 129-418 131-441 (861)
62 1ibr_B P95, importin beta-1 su 98.3 1.7E-06 5.7E-11 90.1 11.4 235 133-376 173-438 (462)
63 3b2a_A TON_1937, putative unch 98.2 0.00011 3.7E-09 69.5 19.3 185 132-334 33-220 (265)
64 1ho8_A Vacuolar ATP synthase s 98.2 5E-05 1.7E-09 79.4 18.9 234 178-416 171-475 (480)
65 1u6g_C TIP120 protein, CAND1; 98.2 1.5E-06 5.1E-11 102.7 7.8 271 133-422 7-289 (1230)
66 4ady_A RPN2, 26S proteasome re 98.1 0.00032 1.1E-08 79.4 24.0 233 134-416 431-675 (963)
67 2vgl_A Adaptor protein complex 98.1 0.00053 1.8E-08 75.2 24.6 281 102-416 125-432 (621)
68 2vgl_A Adaptor protein complex 98.1 0.00036 1.2E-08 76.5 23.1 256 134-418 113-399 (621)
69 2qk2_A LP04448P; mini spindles 98.0 7.8E-05 2.7E-09 71.3 14.7 180 136-332 19-205 (242)
70 1u6g_C TIP120 protein, CAND1; 98.0 6.8E-05 2.3E-09 88.5 16.3 222 134-376 50-285 (1230)
71 3b2a_A TON_1937, putative unch 97.9 0.0011 3.9E-08 62.6 18.7 220 175-416 34-260 (265)
72 1te4_A Conserved protein MTH18 97.9 1.5E-06 5E-11 75.5 -0.9 119 133-291 13-131 (131)
73 2qk2_A LP04448P; mini spindles 97.8 0.00013 4.4E-09 69.8 11.2 183 219-420 18-208 (242)
74 1te4_A Conserved protein MTH18 97.8 2.8E-06 9.5E-11 73.7 -0.8 118 173-329 11-130 (131)
75 2qk1_A Protein STU2; STU2P, XM 97.7 0.00013 4.6E-09 70.6 10.0 188 137-332 21-220 (249)
76 3tjz_B Coatomer subunit gamma; 97.6 0.0012 4.1E-08 67.1 15.5 242 134-417 70-316 (355)
77 2db0_A 253AA long hypothetical 97.5 0.023 7.8E-07 51.8 21.0 212 132-376 32-247 (253)
78 2db0_A 253AA long hypothetical 97.5 0.015 5.1E-07 53.0 19.6 211 174-416 32-245 (253)
79 3dad_A FH1/FH2 domain-containi 97.5 0.002 6.8E-08 64.3 15.3 149 263-416 121-285 (339)
80 4ady_A RPN2, 26S proteasome re 97.4 0.015 5.2E-07 65.8 23.2 242 132-418 472-720 (963)
81 2qk1_A Protein STU2; STU2P, XM 97.4 0.00099 3.4E-08 64.4 11.4 189 221-418 21-221 (249)
82 1ho8_A Vacuolar ATP synthase s 97.3 0.0015 5.1E-08 68.4 12.6 232 137-376 172-477 (480)
83 3dad_A FH1/FH2 domain-containi 97.2 0.0038 1.3E-07 62.3 13.9 155 133-292 119-285 (339)
84 2iw3_A Elongation factor 3A; a 97.2 0.012 4.1E-07 67.2 19.6 262 134-417 56-324 (986)
85 3tjz_B Coatomer subunit gamma; 97.0 0.0051 1.7E-07 62.5 12.6 240 133-410 105-346 (355)
86 2iw3_A Elongation factor 3A; a 96.7 0.014 4.8E-07 66.7 14.0 260 134-416 16-279 (986)
87 4ffb_C Protein STU2; tubulin f 96.1 0.072 2.5E-06 51.6 13.5 183 137-332 14-212 (278)
88 3oc3_A Helicase MOT1, MOT1; re 95.9 0.096 3.3E-06 55.6 13.8 238 132-413 174-432 (800)
89 1wa5_C Importin alpha RE-expor 94.4 1.6 5.6E-05 49.7 19.7 255 148-418 377-671 (960)
90 3ebb_A Phospholipase A2-activa 94.3 0.28 9.5E-06 48.6 11.3 138 276-414 160-303 (304)
91 2fv2_A RCD1 required for cell 94.0 1.1 3.9E-05 42.8 14.3 231 134-373 5-266 (268)
92 1wa5_C Importin alpha RE-expor 93.5 2.7 9.4E-05 47.9 19.5 217 143-374 416-669 (960)
93 2of3_A ZYG-9; multifunctional 93.3 1.2 4.1E-05 43.1 13.5 174 136-331 50-235 (266)
94 2fv2_A RCD1 required for cell 93.2 1.7 5.7E-05 41.6 13.9 174 237-415 74-266 (268)
95 2f31_A Diaphanous protein homo 92.6 2.3 7.9E-05 40.0 14.3 158 260-417 43-228 (233)
96 2x19_B Importin-13; nuclear tr 92.5 5.5 0.00019 45.1 19.9 175 232-415 462-644 (963)
97 4ffb_C Protein STU2; tubulin f 92.5 2.6 8.7E-05 40.4 14.8 184 218-417 12-212 (278)
98 1lrv_A LRV, leucine-rich repea 92.3 0.14 4.9E-06 49.0 5.4 45 348-412 197-241 (244)
99 3ebb_A Phospholipase A2-activa 91.9 3.3 0.00011 40.8 14.8 158 134-302 105-272 (304)
100 3c2g_A SYS-1 protein; beta-cat 91.2 3.4 0.00012 41.3 13.7 112 196-314 264-376 (619)
101 2x1g_F Cadmus; transport prote 91.1 9.1 0.00031 43.4 19.8 257 144-416 518-813 (971)
102 3eg5_B Protein diaphanous homo 90.8 5.1 0.00017 40.7 15.4 143 276-418 132-295 (383)
103 2x19_B Importin-13; nuclear tr 90.0 9.4 0.00032 43.1 18.5 217 184-420 459-717 (963)
104 4hat_C Exportin-1; heat repeat 89.8 1.4 4.8E-05 50.8 11.3 137 276-418 465-619 (1023)
105 2x1g_F Cadmus; transport prote 89.7 6.6 0.00023 44.6 17.0 137 232-376 477-616 (971)
106 2bnx_A Diaphanous protein homo 89.0 5.8 0.0002 40.3 14.1 142 277-418 71-233 (386)
107 1upk_A MO25 protein; transfera 87.5 8.4 0.00029 38.3 13.6 197 172-378 76-286 (341)
108 1upk_A MO25 protein; transfera 86.4 7.3 0.00025 38.7 12.4 192 134-335 80-286 (341)
109 3oc3_A Helicase MOT1, MOT1; re 85.2 3.2 0.00011 44.3 9.5 181 147-370 243-431 (800)
110 3m1i_C Exportin-1; heat repeat 83.6 31 0.0011 39.5 18.2 98 276-376 465-570 (1049)
111 3gjx_A Exportin-1; transport, 83.4 25 0.00086 40.6 17.0 219 132-376 28-276 (1073)
112 3u0r_A Apoptosis inhibitor 5; 83.0 12 0.00042 38.9 12.7 129 134-289 31-159 (507)
113 3qml_C Protein SLS1, nucleotid 82.0 25 0.00086 34.4 13.8 151 134-292 24-188 (315)
114 3ibv_A Exportin-T; karyopherin 81.9 35 0.0012 39.0 17.5 271 133-414 41-358 (980)
115 1lsh_A Lipovitellin (LV-1N, LV 80.9 21 0.00072 41.2 15.3 171 176-377 393-578 (1056)
116 3eg5_B Protein diaphanous homo 80.4 52 0.0018 33.2 18.8 153 136-296 70-249 (383)
117 2of3_A ZYG-9; multifunctional 79.6 6.8 0.00023 37.7 9.0 97 134-245 134-233 (266)
118 3c2g_A SYS-1 protein; beta-cat 78.3 44 0.0015 33.5 14.2 126 288-415 266-401 (619)
119 3l9t_A Putative uncharacterize 75.4 51 0.0017 31.0 13.4 150 127-303 65-218 (240)
120 3a6p_A Exportin-5; exportin-5, 74.8 89 0.0031 36.4 18.4 219 134-377 13-278 (1204)
121 3m1i_C Exportin-1; heat repeat 73.0 68 0.0023 36.6 16.7 218 134-376 18-264 (1049)
122 4hat_C Exportin-1; heat repeat 72.3 13 0.00044 42.8 10.3 143 144-295 465-620 (1023)
123 1lrv_A LRV, leucine-rich repea 70.3 2.8 9.7E-05 39.8 3.5 20 220-242 150-169 (244)
124 3u0r_A Apoptosis inhibitor 5; 69.7 33 0.0011 35.7 11.5 118 276-414 40-160 (507)
125 2f31_A Diaphanous protein homo 69.2 72 0.0025 29.5 18.4 124 165-296 35-183 (233)
126 1x5b_A Signal transducing adap 69.1 12 0.00041 33.1 7.2 74 129-202 49-124 (163)
127 1mhq_A ADP-ribosylation factor 67.6 14 0.00048 32.1 7.2 75 129-203 35-116 (148)
128 3ldz_A STAM-1, signal transduc 66.6 11 0.00038 32.4 6.3 73 130-202 40-113 (140)
129 1lsh_A Lipovitellin (LV-1N, LV 64.8 48 0.0016 38.2 13.0 129 136-296 444-579 (1056)
130 1juq_A ADP-ribosylation factor 63.5 14 0.00049 32.9 6.6 75 129-203 47-128 (171)
131 3g2s_A C-terminal fragment of 60.5 22 0.00074 30.9 7.0 75 129-203 45-126 (149)
132 2bnx_A Diaphanous protein homo 59.6 1.5E+02 0.0051 29.8 17.8 117 173-296 46-187 (386)
133 3ibv_A Exportin-T; karyopherin 57.7 2.5E+02 0.0086 31.8 20.9 208 145-377 21-262 (980)
134 3zyq_A Hepatocyte growth facto 57.0 18 0.00061 33.7 6.3 74 129-202 42-117 (226)
135 3a6p_A Exportin-5; exportin-5, 55.8 2E+02 0.007 33.4 16.4 259 142-413 57-376 (1204)
136 3gjx_A Exportin-1; transport, 48.8 3.6E+02 0.012 31.0 19.1 180 137-332 65-275 (1073)
137 1dvp_A HRS, hepatocyte growth 45.4 36 0.0012 31.4 6.4 74 129-202 39-114 (220)
138 3gs3_A Symplekin, LD45768P; he 44.5 1.4E+02 0.0047 28.3 10.4 141 134-291 17-171 (257)
139 3l9t_A Putative uncharacterize 41.7 1.4E+02 0.0047 28.0 9.6 93 143-251 115-210 (240)
140 3gae_A Protein DOA1; UFD3, CDC 37.3 46 0.0016 31.5 5.8 97 317-417 104-217 (253)
141 1elk_A Target of MYB1; superhe 37.2 78 0.0027 27.5 6.9 75 129-203 50-130 (157)
142 3gs3_A Symplekin, LD45768P; he 31.1 1.9E+02 0.0065 27.3 9.0 65 132-201 53-117 (257)
143 3gae_A Protein DOA1; UFD3, CDC 30.6 37 0.0013 32.1 3.9 100 276-379 102-221 (253)
144 1x5b_A Signal transducing adap 28.1 1.3E+02 0.0043 26.3 6.7 72 346-418 53-126 (163)
145 3ldz_A STAM-1, signal transduc 27.8 1.1E+02 0.0036 26.0 6.0 72 346-418 43-115 (140)
146 3o2t_A Symplekin; heat repeat, 27.2 3E+02 0.01 27.6 10.1 80 147-239 40-120 (386)
147 3l3f_X Protein DOA1, DOA1/UFD3 26.4 1.2E+02 0.004 30.4 6.8 128 281-417 180-326 (362)
148 3pst_A Protein DOA1; protein d 25.7 1.2E+02 0.004 31.1 6.7 128 281-417 243-389 (425)
149 3o2t_A Symplekin; heat repeat, 25.4 1.9E+02 0.0066 29.0 8.3 65 132-201 63-127 (386)
150 3qml_C Protein SLS1, nucleotid 22.8 5.3E+02 0.018 25.0 15.4 134 103-244 43-185 (315)
151 2xpp_A IWS1, ECU08_0440; trans 22.3 3.7E+02 0.013 23.0 10.6 86 152-243 40-131 (145)
152 1mhq_A ADP-ribosylation factor 21.8 1.3E+02 0.0045 25.8 5.4 72 346-418 39-117 (148)
153 1vdy_A Hypothetical protein (R 21.3 2.2E+02 0.0074 24.3 6.6 50 132-184 49-99 (140)
154 1juq_A ADP-ribosylation factor 20.6 1.2E+02 0.0041 26.7 5.1 72 346-418 51-129 (171)
155 3pst_A Protein DOA1; protein d 20.4 3.4E+02 0.012 27.6 8.9 102 276-381 274-395 (425)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=6e-32 Score=293.32 Aligned_cols=368 Identities=17% Similarity=0.189 Sum_probs=271.2
Q ss_pred Hhhhhhhheecc-CCcccccccccccCCCC----CCcchhhhhcccCCCCCCCCC-------CCccchhhh------hch
Q 010064 41 FRRKIFDAVSCG-GSSRYGREILDDEGISL----PTPKAKTEMESRGVDSEKGNG-------RKPEKQKEA------KGC 102 (519)
Q Consensus 41 ~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~------~~~ 102 (519)
-|++.|+.-+.. ++.|+||++..-..|+. ++.++|....... +...... ......++. +-+
T Consensus 12 ~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~lv~~l~s~d~ 90 (529)
T 3tpo_A 12 ARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPD-DATSPLQENRNNQGTVNWSVEDIVKGINSNNL 90 (529)
T ss_dssp --------------------------------CCSCSCCCCCC----------------CGGGSSCCHHHHHHHHTSSCH
T ss_pred HHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcc-cccChhhhccchhhhHHHHHHHHHHHhcCCCH
Confidence 378888877766 78888888887777766 6666654322111 1000000 000000000 113
Q ss_pred hhHHHHHHHHHcc-cC-ChhhHHHHHhcchhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHH
Q 010064 103 VSKSEKLLDLLNL-AE-GEAASEIKKKEEALEELKIVVKDLQ-SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPL 179 (519)
Q Consensus 103 ~~~~~~l~aLl~l-s~-~e~~~~~i~~~g~~~~l~~Lv~~L~-s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~L 179 (519)
..+.+++..+.++ +. .....+.+.+.|+ ++.||+.|. +++++.|.+|+++|.+|+..+++.+..+.+.|+||+|
T Consensus 91 ~~q~~a~~~~rklLs~~~~~~i~~ii~~G~---ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~L 167 (529)
T 3tpo_A 91 ESQLQATQAARKLLSREKQPPIDNIIRAGL---IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF 167 (529)
T ss_dssp HHHHHHHHHHHHHHTSSSCCCHHHHHHTTH---HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHCCC---HHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 3445555555554 22 2233456668888 999999996 4568899999999999999888889999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCCChhhh-
Q 010064 180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDSNKPII- 256 (519)
Q Consensus 180 v~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~~k~~I- 256 (519)
+.+|.+++.++++.|+++|+||+.+++.++..+++.|++++|+.++..+.. ....+...++++|.+++........+
T Consensus 168 v~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 247 (529)
T 3tpo_A 168 ISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 247 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 999999999999999999999999889999999999999999999987521 13456788999999999876554444
Q ss_pred hhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-
Q 010064 257 GSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS- 332 (519)
Q Consensus 257 ~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~- 332 (519)
...+++|.|+.++.+ .+.+++.+|+|+|.+|+.+++ ....+++.|+++.|+.+|.+ ..++..++.+|+||+.
T Consensus 248 ~~~~~lp~L~~LL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~ 323 (529)
T 3tpo_A 248 AVEQILPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 323 (529)
T ss_dssp HHHHHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHhhHHHHHHHHhcC----CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc
Confidence 347899999999988 799999999999999998876 56667789999999999964 4599999999999998
Q ss_pred CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064 333 TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL 412 (519)
Q Consensus 333 ~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L 412 (519)
+++.+..+.+ .|+++.|+.+|. +.++.+++.|+|+|+||+.+++..++.+.+.|++|.|+.++.+++..+++.|+++|
T Consensus 324 ~~~~~~~i~~-~g~l~~L~~LL~-~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 401 (529)
T 3tpo_A 324 TDEQTQKVID-AGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAI 401 (529)
T ss_dssp CHHHHHHHHH-TTGGGGHHHHTT-CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred chHHHHHHhh-cccHHHHHHHHc-CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5667777888 799999999999 67899999999999999999899999999999999999999999999999999999
Q ss_pred HHhhhc
Q 010064 413 ECLRVD 418 (519)
Q Consensus 413 ~~l~~~ 418 (519)
.++...
T Consensus 402 ~nl~~~ 407 (529)
T 3tpo_A 402 TNYTSG 407 (529)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 999854
No 2
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=5.9e-33 Score=286.08 Aligned_cols=268 Identities=20% Similarity=0.210 Sum_probs=235.2
Q ss_pred hHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccChhhHHHHHh
Q 010064 104 SKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQS-----------ESEEQRREAASKVRSLAKENSETRVTLAM 172 (519)
Q Consensus 104 ~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s-----------~~~~~~~~Aa~~L~~La~~~~~~r~~l~~ 172 (519)
.+++++++|.|++.+++++..+.+.|+ ++.|+.+|.. .+...|..|+++|++|+..+..+|..+..
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~---l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGG---LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTH---HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC---HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 378999999999999999999999998 8888888842 24678999999999999988778888865
Q ss_pred -cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-ChhhHHHHHhcCcHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcc-
Q 010064 173 -LGAIPPLAGMLDFQLADSQISSLYALLNLGIG-NDLNKAAIVKAGAVHKMLKLI-ESPVAPNPSVSEAIVANFLGLSA- 248 (519)
Q Consensus 173 -~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~-~~~nk~~iv~aG~v~~Lv~lL-~s~~~~~~~~~~~a~~aL~~LS~- 248 (519)
.|+||+||.+|+++++++++.|+++|.||+.+ ++.+|..|++.|+||.|+++| +++ +..+++.++++|++|+.
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~---~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---KESTLKSVLSALWNLSAH 201 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHHcc
Confidence 46699999999999999999999999999985 678999999999999999974 566 78999999999999998
Q ss_pred CCCChhhhh-hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC----CCccHHHHHhcCcHHHHHHHcCC--HHHHH
Q 010064 249 LDSNKPIIG-SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI----FPSNISFILETDLIRYLLEMLGD--MELSE 321 (519)
Q Consensus 249 ~~~~k~~I~-~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~----~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~ 321 (519)
.+++|..|. ..|+||.|+.+|.......+..++..|+++|+||+. +++++..+++.|++++|+.+|.+ .++++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 557888888 699999999999874111112689999999999995 66789999999999999999964 56999
Q ss_pred HHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh
Q 010064 322 RILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG 379 (519)
Q Consensus 322 ~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~ 379 (519)
.|+++|+||+. +++++..+.+ .|+++.|+++|. ++++.+++.|+++|.||+.+.+.
T Consensus 282 ~A~~aL~nLa~~~~~~~~~i~~-~G~i~~Lv~LL~-s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 282 NACGTLWNLSARNPKDQEALWD-MGAVSMLKNLIH-SKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHH-TTHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999996 7889999999 799999999998 67899999999999999988554
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=290.37 Aligned_cols=310 Identities=19% Similarity=0.202 Sum_probs=260.7
Q ss_pred hhhHHHHHHHHHcccCCh-hhHHHHHhcchh-------HHHHHHHHHhcCCC--H------------HHHHHHHHHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGE-AASEIKKKEEAL-------EELKIVVKDLQSES--E------------EQRREAASKVRSL 159 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e-~~~~~i~~~g~~-------~~l~~Lv~~L~s~~--~------------~~~~~Aa~~L~~L 159 (519)
+..+.++.++|.|+.... +.....++.+.+ .....+++.+.+.. . ..++.|+++|.++
T Consensus 96 ~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nl 175 (458)
T 3nmz_A 96 KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 175 (458)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHh
Confidence 466888999999997543 333333344443 12244556665442 1 1245899999999
Q ss_pred hccChhhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCChhhHHHHHh-cCcHHHHHHhhcC
Q 010064 160 AKENSETRVTLAMLGAIPPLAGMLDF-----------QLADSQISSLYALLNLGIGNDLNKAAIVK-AGAVHKMLKLIES 227 (519)
Q Consensus 160 a~~~~~~r~~l~~~G~i~~Lv~lL~s-----------~~~~~~~~a~~aL~NLa~~~~~nk~~iv~-aG~v~~Lv~lL~s 227 (519)
+. ++++|..+.+.|++++|+.+|.. .++.++..|+++|.||+.+++.+|..+.. .|+||.|+++|++
T Consensus 176 s~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s 254 (458)
T 3nmz_A 176 SF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS 254 (458)
T ss_dssp TT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGC
T ss_pred cC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhC
Confidence 85 47999999999999999999952 34678999999999999987778888875 5679999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC-CCccHHHHH-h
Q 010064 228 PVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI-FPSNISFIL-E 303 (519)
Q Consensus 228 ~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~-~~~n~~~l~-~ 303 (519)
+ +.++++.++++|.+|+.. +++|..|.+.|+||.||++|... .+..++..|+.+|+||+. +++++..++ .
T Consensus 255 ~---~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s---~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~ 328 (458)
T 3nmz_A 255 E---SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV---KKESTLKSVLSALWNLSAHCTENKADICAV 328 (458)
T ss_dssp S---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC---CSHHHHHHHHHHHHHHHHHCHHHHHHHHHS
T ss_pred C---CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC---CCHHHHHHHHHHHHHHccCCHHHHHHHHHh
Confidence 8 899999999999999985 45789999999999999986542 688999999999999998 557888887 7
Q ss_pred cCcHHHHHHHcCCH------HHHHHHHHHHHHhcC----CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHH
Q 010064 304 TDLIRYLLEMLGDM------ELSERILSILSNLVS----TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVM 373 (519)
Q Consensus 304 ~g~v~~Lv~lL~~~------~v~~~Al~~L~nLs~----~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL 373 (519)
.|++++|+.+|.+. ++++.|+++|+||+. ++++++.+.+ .|+++.|+++|. +++..+++.|+|+|+||
T Consensus 329 ~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~-~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLK-SHSLTIVSNACGTLWNL 406 (458)
T ss_dssp TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSS-CSCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHc-CCChHHHHHHHHHHHHH
Confidence 89999999999532 489999999999994 8888999998 799999999999 67899999999999999
Q ss_pred hcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCC
Q 010064 374 AHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKG 420 (519)
Q Consensus 374 ~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~ 420 (519)
+.+++++++.+.+.|+||.|++++..+++.+++.|.++|.+|.....
T Consensus 407 a~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 407 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 98888999999999999999999999999999999999999996543
No 4
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.7e-32 Score=292.58 Aligned_cols=284 Identities=17% Similarity=0.184 Sum_probs=246.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
++.++++|++++.+.|..|++.|++|+..++..+..+.+.|+||+||.+|+++++.++..|+++|.||+.+++++|..|+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 78999999999999999999999999988878898899999999999999999999999999999999998899999999
Q ss_pred hcCcHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhh--------cCCC----CCCHHH
Q 010064 214 KAGAVHKMLKLIE-SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLK--------NSDK----KVSPQA 280 (519)
Q Consensus 214 ~aG~v~~Lv~lL~-s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~--------~~~~----~~~~~~ 280 (519)
++|+||.|+++|+ ++ +..+++.++++|++|+..+++|..|++ |++|.|+++|. +... ..+..+
T Consensus 84 ~~G~i~~Lv~lL~~~~---~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTG---NAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HTTCHHHHHHHHTTCC---CHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HcCCHHHHHHHHhhCC---CHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 9999999999999 76 799999999999999999999999999 99999999993 2100 035677
Q ss_pred HHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCC--------HHHHHHHHHHHHHhcCC------------------
Q 010064 281 KQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGD--------MELSERILSILSNLVST------------------ 333 (519)
Q Consensus 281 ~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~--------~~v~~~Al~~L~nLs~~------------------ 333 (519)
+.+|+|+|+||+.+++++..+++. |++++|+.+|.+ ..+.+.++++|.||+..
T Consensus 160 ~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 889999999999987799999998 999999999953 34788999999999731
Q ss_pred ---------------------------------cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhh
Q 010064 334 ---------------------------------PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGD 380 (519)
Q Consensus 334 ---------------------------------~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~ 380 (519)
+.+.+.+++ .++++.|+.+|.+++++.+++.|+|+|.|||.++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 123334555 5788999999987778999999999999999875432
Q ss_pred -----HHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCc
Q 010064 381 -----RQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQ 422 (519)
Q Consensus 381 -----~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~ 422 (519)
+..+.+.|++|.|++++.+++..+++.|.++|.+|..+.+.+
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~ 365 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH
Confidence 223446899999999999999999999999999999765444
No 5
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=2.2e-32 Score=281.76 Aligned_cols=270 Identities=21% Similarity=0.236 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCChhhHHHHHh
Q 010064 146 EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-----------QLADSQISSLYALLNLGIGNDLNKAAIVK 214 (519)
Q Consensus 146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-----------~~~~~~~~a~~aL~NLa~~~~~nk~~iv~ 214 (519)
...++.|+++|.+++.+ +++|..+.+.|++++|+.+|.. .++.++..|+++|.||+.+++.+|..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35678899999999965 7999999999999999999952 24779999999999999987889988865
Q ss_pred -cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 215 -AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 215 -aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
.|+||.|+++|+++ +.++++.++++|.+|+.. +++|..|.+.|+||.||++|... .+..++..|+.+|+||
T Consensus 125 ~~GaIp~LV~LL~s~---~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~---~~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 125 MKGCMRALVAQLKSE---SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV---KKESTLKSVLSALWNL 198 (354)
T ss_dssp CHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC---CCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCC---CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC---CCHHHHHHHHHHHHHH
Confidence 46699999999998 899999999999999985 45789999999999999986442 6889999999999999
Q ss_pred cC-CCccHHHHH-hcCcHHHHHHHcCCH------HHHHHHHHHHHHhcC----CcccHHHHhhcCCcchhhhhhccCCCC
Q 010064 292 SI-FPSNISFIL-ETDLIRYLLEMLGDM------ELSERILSILSNLVS----TPEGRKAISRVPDAFPILVDVLNWTDS 359 (519)
Q Consensus 292 s~-~~~n~~~l~-~~g~v~~Lv~lL~~~------~v~~~Al~~L~nLs~----~~e~r~~i~~~~g~i~~Lv~lL~~s~~ 359 (519)
+. +++++..++ ..|++++|+.+|.+. ++++.|+++|.||+. .+++++.+.+ .|+++.|+++|. +++
T Consensus 199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~-~~~ 276 (354)
T 3nmw_A 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLK-SHS 276 (354)
T ss_dssp HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTT-CSC
T ss_pred HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHc-CCC
Confidence 99 446888887 689999999999532 489999999999995 8889999888 799999999999 678
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCccc
Q 010064 360 PGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVS 424 (519)
Q Consensus 360 ~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~~~ 424 (519)
..+++.|+++|.||+.+++++++.+.+.|+||.|++++..+++.+++.|.++|.+|......++.
T Consensus 277 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 99999999999999988889999999999999999999999999999999999999976555443
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=5e-31 Score=284.90 Aligned_cols=308 Identities=18% Similarity=0.235 Sum_probs=264.2
Q ss_pred hhhHHHHHHHHHcc-cC-ChhhHHHHHhcchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHH
Q 010064 102 CVSKSEKLLDLLNL-AE-GEAASEIKKKEEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPP 178 (519)
Q Consensus 102 ~~~~~~~l~aLl~l-s~-~e~~~~~i~~~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~ 178 (519)
+..+.+++.++.++ +. ...-.+.+.+.|+ ++.||++|+. ++++.|.+|+++|.+|+..+++.+..+++.|+||+
T Consensus 71 ~~~q~~a~~~~rklls~e~~ppi~~ii~~G~---ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~ 147 (510)
T 3ul1_B 71 LESQLQATQAARKLLSREKQPPIDNIIRAGL---IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA 147 (510)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTH---HHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHCCC---HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH
Confidence 44455555555554 22 2223455668888 9999999974 56889999999999999988899999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCCChhhh
Q 010064 179 LAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDSNKPII 256 (519)
Q Consensus 179 Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~~k~~I 256 (519)
|+.+|++++.++++.|+++|+||+.+++.++..+++.|++++|+.++..+.. ....+...++++|.+++........+
T Consensus 148 Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 227 (510)
T 3ul1_B 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 227 (510)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH
Confidence 9999999999999999999999999889999999999999999999987621 12456778999999999876554444
Q ss_pred h-hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC
Q 010064 257 G-SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS 332 (519)
Q Consensus 257 ~-~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~ 332 (519)
. ..+++|.|+.++.+ .+.+++..|+++|.+|+.+++ ....+++.|+++.|+.+|.+ ..++..++++|+||+.
T Consensus 228 ~~~~~~lp~L~~LL~~----~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~ 303 (510)
T 3ul1_B 228 DAVEQILPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303 (510)
T ss_dssp HHHHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhc
Confidence 3 47899999999988 799999999999999998876 55667788999999999964 4699999999999988
Q ss_pred -CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHH
Q 010064 333 -TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRI 411 (519)
Q Consensus 333 -~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~ 411 (519)
+++.+..+.+ .|+++.|+.+|. +.++.+++.|+|+|+||+.++..+++.+.+.|++|.|+.++.+++..+|+.|.++
T Consensus 304 ~~~~~~~~i~~-~g~l~~L~~LL~-~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~a 381 (510)
T 3ul1_B 304 GTDEQTQKVID-AGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381 (510)
T ss_dssp SCHHHHHHHHH-TTGGGGCC-CTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCHHHHHHHhh-ccchHHHHHHhc-CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 5667777888 799999999999 6789999999999999999989999999999999999999999999999999999
Q ss_pred HHHhhhc
Q 010064 412 LECLRVD 418 (519)
Q Consensus 412 L~~l~~~ 418 (519)
|.++...
T Consensus 382 L~Nl~~~ 388 (510)
T 3ul1_B 382 ITNYTSG 388 (510)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 9999854
No 7
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.7e-30 Score=279.33 Aligned_cols=367 Identities=18% Similarity=0.162 Sum_probs=278.5
Q ss_pred hHHhhhhhhheecc-CCcccccccccccCCCC----CCcchhhhhcccCC--CC-CCCC-CCCc------cchhhhhchh
Q 010064 39 AAFRRKIFDAVSCG-GSSRYGREILDDEGISL----PTPKAKTEMESRGV--DS-EKGN-GRKP------EKQKEAKGCV 103 (519)
Q Consensus 39 ~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~-~~~~-~~~~------~~~~~~~~~~ 103 (519)
...|++.|+. ++. ++.|++|++..-..|++ +.-++|........ +. .+.. .... ...-..+-+.
T Consensus 11 ~~~~~~~~k~-~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~ 89 (528)
T 4b8j_A 11 VEVRRNRYKV-AVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGGVYSDDNN 89 (528)
T ss_dssp -----------------CCCCC-----------------CCCC----------------------CHHHHHHHHTSSCHH
T ss_pred hHHHHHhhcc-cCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHHHcCCCHH
Confidence 3458889998 466 88899998888887776 56566654211100 00 0000 0000 0000011144
Q ss_pred hHHHHHHHHHccc-CCh-hhHHHHHhcchhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064 104 SKSEKLLDLLNLA-EGE-AASEIKKKEEALEELKIVVKDLQSES-EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180 (519)
Q Consensus 104 ~~~~~l~aLl~ls-~~e-~~~~~i~~~g~~~~l~~Lv~~L~s~~-~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv 180 (519)
.+..++.+|.++. ... .....+...|+ ++.|+++|.+++ +..+..|+++|.+|+..+++.+..+.+.|++++|+
T Consensus 90 ~~~~A~~~L~~l~s~~~~~~~~~~~~~g~---v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 166 (528)
T 4b8j_A 90 LQLEATTQFRKLLSIERSPPIEEVIQSGV---VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166 (528)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHTTC---HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHCCC---HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHH
Confidence 5667777777773 332 55666777888 999999999886 89999999999999988889999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhC
Q 010064 181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLI-ESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSS 259 (519)
Q Consensus 181 ~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL-~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~ 259 (519)
.+|.++++.++..|+++|.||+.+++.++..+++.|+++.|+.++ .+. +..++..++++|.+|+...+........
T Consensus 167 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 243 (528)
T 4b8j_A 167 KLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT---KLSMLRNATWTLSNFCRGKPQPSFEQTR 243 (528)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC---CHHHHHHHHHHHHHHHCSSSCCCHHHHT
T ss_pred HHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC---CHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 999999999999999999999998888999999999999999999 454 7899999999999999886555555679
Q ss_pred CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-Ccc
Q 010064 260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS-TPE 335 (519)
Q Consensus 260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~e 335 (519)
|++|.|+.+|.. .+..++..|+++|.||+...+ ....+++.|+++.|+.+|.+ +.++..|+++|+||+. .+.
T Consensus 244 ~~l~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~ 319 (528)
T 4b8j_A 244 PALPALARLIHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA 319 (528)
T ss_dssp THHHHHHHHTTC----CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH
Confidence 999999999988 799999999999999998876 45678889999999999964 4599999999999998 666
Q ss_pred cHHHHhhcCCcchhhhhhccCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010064 336 GRKAISRVPDAFPILVDVLNWTD-SPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILEC 414 (519)
Q Consensus 336 ~r~~i~~~~g~i~~Lv~lL~~s~-~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~ 414 (519)
.+..+.+ .|+++.|+.+|. +. ++.++..|+|+|.||+.++....+.+++.|++|.|+.++.++++.++..|.++|.+
T Consensus 320 ~~~~~~~-~~~l~~L~~lL~-~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~n 397 (528)
T 4b8j_A 320 QTQCIID-HQALPCLLSLLT-QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN 397 (528)
T ss_dssp HHHHHHT-TTHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-hhhHHHHHHHHc-CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7777887 799999999999 55 89999999999999999888888899999999999999999999999999999999
Q ss_pred hhhc
Q 010064 415 LRVD 418 (519)
Q Consensus 415 l~~~ 418 (519)
+...
T Consensus 398 l~~~ 401 (528)
T 4b8j_A 398 ATSG 401 (528)
T ss_dssp HHHH
T ss_pred HHcC
Confidence 9965
No 8
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.98 E-value=3.3e-31 Score=287.62 Aligned_cols=286 Identities=22% Similarity=0.249 Sum_probs=243.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-ChhhHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIG-NDLNKAAI 212 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~-~~~nk~~i 212 (519)
++.||++|.+++.+.|..|+++|++|+..+.++|..+++.|+||+||.+|++++.++++.|+++|.||+.+ +++||..|
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999995 69999999
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhc---C-----------CCCCCH
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKN---S-----------DKKVSP 278 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~---~-----------~~~~~~ 278 (519)
+++|+||.|+.+|++.. +..+++.++++|++||.++++|..|++ ++||.|++++.. + ....+.
T Consensus 130 ~~~GaIp~LV~LL~s~~--~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKAR--DMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHTTHHHHHHHHHHHCC--SHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHcCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 99999999999999731 688999999999999999999999985 579999998721 0 011367
Q ss_pred HHHHHHHHHHHHhcCCCc-cHHHHHhc-CcHHHHHHHcCC--------HHHHHHHHHHHHHhcCCcc-------------
Q 010064 279 QAKQDALRALYNLSIFPS-NISFILET-DLIRYLLEMLGD--------MELSERILSILSNLVSTPE------------- 335 (519)
Q Consensus 279 ~~~~~A~~aL~nLs~~~~-n~~~l~~~-g~v~~Lv~lL~~--------~~v~~~Al~~L~nLs~~~e------------- 335 (519)
.++.+|+++|.||+...+ ++..+++. |+++.|+.+|.+ ...++.|+++|.||+...+
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 999999999999998875 58888876 667899999842 3589999999999996411
Q ss_pred -------------cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh----hhHHHHHHcCcHHHHHHHhh
Q 010064 336 -------------GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY----GDRQAMIEAGIASALLELTL 398 (519)
Q Consensus 336 -------------~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~----~~~~~i~~~G~i~~Ll~Ll~ 398 (519)
+...++. .++++.|+.+|..+.++.+++.|+++|.|||.+.. ..+..+.+.|++|.|+.|+.
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ---------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred ccccccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 1122223 34566778899756789999999999999998752 23445667899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhcCCCcc
Q 010064 399 LGSTLAQKRASRILECLRVDKGKQV 423 (519)
Q Consensus 399 ~gs~~~~~~A~~~L~~l~~~~~~~~ 423 (519)
.+++.+++.|.++|.+|..+.+.+.
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~~~~~ 390 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDARNKE 390 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CCCHHHHHHHHHHHHHHhCChhHHH
Confidence 9999999999999999998766554
No 9
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=3.5e-30 Score=274.65 Aligned_cols=314 Identities=17% Similarity=0.153 Sum_probs=265.3
Q ss_pred hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv 180 (519)
+..+.+++.+|.+++.+ +..+..+.+.|+ ++.|+++|++++...|..|+++|++|+..++++|..+++.|+||+|+
T Consensus 16 ~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~---i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv 92 (457)
T 1xm9_A 16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGG---ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAV 92 (457)
T ss_dssp THHHHHHHHHHHHHTSSCSSHHHHHHHTTH---HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHcCC---HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence 55688899999999865 456778888888 99999999999999999999999999988789999999999999999
Q ss_pred Hhhc-CCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhc--------CCCC-----CCHHHHHHHHHHHHHh
Q 010064 181 GMLD-FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIE--------SPVA-----PNPSVSEAIVANFLGL 246 (519)
Q Consensus 181 ~lL~-s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~--------s~~~-----~~~~~~~~a~~aL~~L 246 (519)
++|+ ++++++++.++++|+||+.+ +.+|..+++ |++|.|++++. ++.. .+..+...|+++|.||
T Consensus 93 ~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nL 170 (457)
T 1xm9_A 93 SLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL 170 (457)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHH
Confidence 9999 88999999999999999997 889999999 99999999993 2200 1456677999999999
Q ss_pred ccCCCChhhhhhC-CChHHHHHHhhcC------C-C--------------------------------------------
Q 010064 247 SALDSNKPIIGSS-GAVPFLVKTLKNS------D-K-------------------------------------------- 274 (519)
Q Consensus 247 S~~~~~k~~I~~~-gai~~LV~lL~~~------~-~-------------------------------------------- 274 (519)
+..++++..+.+. |+++.|+.+|.+. + .
T Consensus 171 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (457)
T 1xm9_A 171 SSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCF 250 (457)
T ss_dssp TTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-------------
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchh
Confidence 9987788888887 9999999888640 0 0
Q ss_pred --------------------------------------------CCCHHHHHHHHHHHHHhcCCCcc----H-HHHH-hc
Q 010064 275 --------------------------------------------KVSPQAKQDALRALYNLSIFPSN----I-SFIL-ET 304 (519)
Q Consensus 275 --------------------------------------------~~~~~~~~~A~~aL~nLs~~~~n----~-~~l~-~~ 304 (519)
..++.++..|+|+|.||+.++.. . +.++ +.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~ 330 (457)
T 1xm9_A 251 SNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKE 330 (457)
T ss_dssp ---------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTS
T ss_pred hccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHc
Confidence 12456778899999999986542 1 2334 68
Q ss_pred CcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCC-----HHHHHHHHHHHHHHhcCC
Q 010064 305 DLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDS-----PGCQEKASYVLMVMAHKS 377 (519)
Q Consensus 305 g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~-----~~~qe~A~~~L~nL~~~~ 377 (519)
|+++.|+.+|. +.+++..|+++|.||+.+++.+..|.. ++++.|+++|...+. +++...++++|.|+..++
T Consensus 331 ~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~ 408 (457)
T 1xm9_A 331 KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ 408 (457)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC
T ss_pred CCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC
Confidence 99999999995 456999999999999998877766654 799999999984322 368889999999999888
Q ss_pred hhhHHHHHHcCcHHHHHHHhhcC-CHHHHHHHHHHHHHhhhcCCCc
Q 010064 378 YGDRQAMIEAGIASALLELTLLG-STLAQKRASRILECLRVDKGKQ 422 (519)
Q Consensus 378 ~~~~~~i~~~G~i~~Ll~Ll~~g-s~~~~~~A~~~L~~l~~~~~~~ 422 (519)
+++.+.+.+.|+++.|++|+.++ ++++++.|.++|.++..+.+-|
T Consensus 409 ~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 409 PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 88899999999999999999999 9999999999999988665433
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=2.8e-30 Score=289.05 Aligned_cols=305 Identities=14% Similarity=0.073 Sum_probs=268.0
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHh-cchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh----------------
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKK-EEALEELKIVVKDLQSESEEQRREAASKVRSLAKENS---------------- 164 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~-~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~---------------- 164 (519)
...+..++.+|..++.+...++.++. .|. ++.||++|++++...+..|+++|.||+...+
T Consensus 393 ~~v~~~AveaLayLS~~~~vk~~lv~d~g~---Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~ 469 (810)
T 3now_A 393 KDIRRWAADGLAYLTLDAECKEKLIEDKAS---IHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAK 469 (810)
T ss_dssp SSHHHHHHHHHHHHTTSHHHHHHHHHCHHH---HHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTC
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHccch---HHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhh
Confidence 45678889999999999888888864 566 9999999999999999999999999997531
Q ss_pred -------------hhH---HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCC
Q 010064 165 -------------ETR---VTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESP 228 (519)
Q Consensus 165 -------------~~r---~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~ 228 (519)
..+ ..+.+.|++|+|+.+|+++++.+++.|+|+|.||+. +++++..++++|++|+|+.+|+++
T Consensus 470 ~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~ 548 (810)
T 3now_A 470 QHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEG 548 (810)
T ss_dssp CSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred ccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccC
Confidence 123 577889999999999999999999999999999997 588999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCChhhhh---hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC-ccHHHHHhc
Q 010064 229 VAPNPSVSEAIVANFLGLSALDSNKPIIG---SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP-SNISFILET 304 (519)
Q Consensus 229 ~~~~~~~~~~a~~aL~~LS~~~~~k~~I~---~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~-~n~~~l~~~ 304 (519)
+...++.|+++|.+|+...+....+. ..|++|+|+.+|... .+...+..|+++|.||+..+ +++..+++.
T Consensus 549 ---~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~---~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a 622 (810)
T 3now_A 549 ---TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD---CTALENFESLMALTNLASMNESVRQRIIKE 622 (810)
T ss_dssp ---CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC---CcHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 78999999999999987644333321 246999999999863 45566779999999999986 488899999
Q ss_pred CcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 010064 305 DLIRYLLEMLGD--MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQ 382 (519)
Q Consensus 305 g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~ 382 (519)
|+++.|+.+|.+ +.+++.|+++|+||+.+++.+..++...|.++.|+.++. +.+..+|+.|+|+|.||+.+++..++
T Consensus 623 G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~-s~d~~vq~~Aa~ALanLt~~s~~~~~ 701 (810)
T 3now_A 623 QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE-DEDEETATACAGALAIITSVSVKCCE 701 (810)
T ss_dssp THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999953 459999999999999998888888853689999999999 67899999999999999997788889
Q ss_pred HHHH-cCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 383 AMIE-AGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 383 ~i~~-~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
.+++ .|++|.|+.|+.+++..+|++|.++|.++..
T Consensus 702 ~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 702 KILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 9998 9999999999999999999999999999985
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=276.23 Aligned_cols=269 Identities=20% Similarity=0.202 Sum_probs=235.5
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccChhhHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQS-----------ESEEQRREAASKVRSLAKENSETRVTL 170 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s-----------~~~~~~~~Aa~~L~~La~~~~~~r~~l 170 (519)
...+++++++|.|++.+++++..+.+.|+ ++.|+.+|.. .+...+.+|+++|.+|+..++.++..+
T Consensus 162 ~~~~~qAv~aL~nls~~~e~R~~i~~~G~---l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i 238 (458)
T 3nmz_A 162 EHQICPAVCVLMKLSFDEEHRHAMNELGG---LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 238 (458)
T ss_dssp TTTTHHHHHHHHHHTTSHHHHHHHHHTTH---HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHCCC---HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHH
Confidence 45588999999999999999999999998 8888888842 245679999999999999887788877
Q ss_pred Hh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-ChhhHHHHHhcCcHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhc
Q 010064 171 AM-LGAIPPLAGMLDFQLADSQISSLYALLNLGIG-NDLNKAAIVKAGAVHKMLKLI-ESPVAPNPSVSEAIVANFLGLS 247 (519)
Q Consensus 171 ~~-~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~-~~~nk~~iv~aG~v~~Lv~lL-~s~~~~~~~~~~~a~~aL~~LS 247 (519)
.. .|+||+||.+|+++++++++.|+++|.||+.+ ++.+|..|+++|+||.|+++| .++ +..+++.++++|++|+
T Consensus 239 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~---~~~v~~~A~~aL~nLs 315 (458)
T 3nmz_A 239 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---KESTLKSVLSALWNLS 315 (458)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC---SHHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHc
Confidence 65 56699999999999999999999999999985 678999999999999999975 555 7899999999999999
Q ss_pred c-CCCChhhhh-hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC----CCccHHHHHhcCcHHHHHHHcC--CHHH
Q 010064 248 A-LDSNKPIIG-SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI----FPSNISFILETDLIRYLLEMLG--DMEL 319 (519)
Q Consensus 248 ~-~~~~k~~I~-~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~----~~~n~~~l~~~g~v~~Lv~lL~--~~~v 319 (519)
. .++++..|. ..|+||.|+.+|.......+..++..|+++|+||+. +++++..+++.|++++|+.+|. +.++
T Consensus 316 ~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v 395 (458)
T 3nmz_A 316 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 395 (458)
T ss_dssp HHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHH
T ss_pred cCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHH
Confidence 8 667888888 699999999999874111112689999999999995 6678999999999999999995 4569
Q ss_pred HHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh
Q 010064 320 SERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY 378 (519)
Q Consensus 320 ~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~ 378 (519)
++.|+++|+||+. +++++..+++ .|+++.|+++|. ++++.+++.|+++|.||+.+++
T Consensus 396 ~~~A~~aL~nLa~~~~~~~~~i~~-~G~I~~Lv~LL~-s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 396 VSNACGTLWNLSARNPKDQEALWD-MGAVSMLKNLIH-SKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHH-HTHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999996 7889999999 799999999998 6889999999999999998754
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=2.6e-29 Score=272.81 Aligned_cols=311 Identities=17% Similarity=0.137 Sum_probs=261.0
Q ss_pred hhhHHHHHHHHHcccC-ChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHH
Q 010064 102 CVSKSEKLLDLLNLAE-GEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKE-NSETRVTLAMLGAIPPL 179 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~-~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~-~~~~r~~l~~~G~i~~L 179 (519)
...+.++..+|.+++. ++.++..+.+.|+ ++.||++|.+++.++|..|+++|++|+.. +.++|..+++.|+||+|
T Consensus 62 ~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~---Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~L 138 (584)
T 3l6x_A 62 DAVKSNAAAYLQHLCYRNDKVKTDVRKLKG---IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138 (584)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTH---HHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHcCC---cHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHH
Confidence 5678888899999985 7889999999998 99999999999999999999999999985 57999999999999999
Q ss_pred HHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcC---------------CCCCCHHHHHHHHHHH
Q 010064 180 AGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIES---------------PVAPNPSVSEAIVANF 243 (519)
Q Consensus 180 v~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s---------------~~~~~~~~~~~a~~aL 243 (519)
|.+|++ .+.++++.++.+|+||+. ++.+|..|++ |++|.|++++.. ....+..+++.|+++|
T Consensus 139 V~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L 216 (584)
T 3l6x_A 139 VRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCL 216 (584)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHH
Confidence 999997 688999999999999999 5999999996 579999997720 0001578999999999
Q ss_pred HHhccCCCC-hhhhhh-CCChHHHHHHhhcC----------------------------C--------------------
Q 010064 244 LGLSALDSN-KPIIGS-SGAVPFLVKTLKNS----------------------------D-------------------- 273 (519)
Q Consensus 244 ~~LS~~~~~-k~~I~~-~gai~~LV~lL~~~----------------------------~-------------------- 273 (519)
.||+...++ |..|.+ .|+++.||.++.+. .
T Consensus 217 ~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~ 296 (584)
T 3l6x_A 217 RNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTS 296 (584)
T ss_dssp HHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------C
T ss_pred HHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccccccccccc
Confidence 999987644 777777 46667888876530 0
Q ss_pred ----------------------CCCCHHHHHHHHHHHHHhcCCCc-----cHHHHHhcCcHHHHHHHcC--CHHHHHHHH
Q 010064 274 ----------------------KKVSPQAKQDALRALYNLSIFPS-----NISFILETDLIRYLLEMLG--DMELSERIL 324 (519)
Q Consensus 274 ----------------------~~~~~~~~~~A~~aL~nLs~~~~-----n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al 324 (519)
...++.+++.|++||.||+.+.. ++..+.+.++++.|+.+|. +.++++.|+
T Consensus 297 ~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~ 376 (584)
T 3l6x_A 297 PARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAAS 376 (584)
T ss_dssp CCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred CchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHH
Confidence 01346677888888888876542 2233445689999999995 467999999
Q ss_pred HHHHHhcCCcccHHHHhhcCCcchhhhhhccCCC-------CHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHh
Q 010064 325 SILSNLVSTPEGRKAISRVPDAFPILVDVLNWTD-------SPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELT 397 (519)
Q Consensus 325 ~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~-------~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll 397 (519)
++|+||+.++.++..| . .|+++.|+++|.+.. +..++..|+++|.||+.+++++++.+.+.|+||.|+.++
T Consensus 377 ~aL~nLs~~~~~~~~I-~-~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL 454 (584)
T 3l6x_A 377 GALRNLAVDARNKELI-G-KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLIN 454 (584)
T ss_dssp HHHHHHHTTCSCHHHH-H-HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHhCChhHHHHH-H-hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH
Confidence 9999999988888776 5 589999999998542 467889999999999999999999999999999999999
Q ss_pred hcC--CHHHHHHHHHHHHHhhhcC
Q 010064 398 LLG--STLAQKRASRILECLRVDK 419 (519)
Q Consensus 398 ~~g--s~~~~~~A~~~L~~l~~~~ 419 (519)
.++ ++.+++.|.++|.+|..+.
T Consensus 455 ~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 455 KSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred hCCCCChHHHHHHHHHHHHHHcCH
Confidence 987 8999999999999998554
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=5.2e-28 Score=261.81 Aligned_cols=365 Identities=16% Similarity=0.181 Sum_probs=289.5
Q ss_pred hhhhhhhee-cc-CCcccccccccccCCCC----CCcchhhhhcc-----cCCCCC-----CCCCC-C-------ccchh
Q 010064 42 RRKIFDAVS-CG-GSSRYGREILDDEGISL----PTPKAKTEMES-----RGVDSE-----KGNGR-K-------PEKQK 97 (519)
Q Consensus 42 ~~~~~~~~~-~~-~~~r~~~~~~~~~~~~~----~~~~~~~~~~~-----~~~~~~-----~~~~~-~-------~~~~~ 97 (519)
|++.|+.-+ .. ++.|++|++..-..|+. ++.++|..... ...+.. ....+ . ....-
T Consensus 17 ~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L 96 (530)
T 1wa5_B 17 RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQL 96 (530)
T ss_dssp GCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHHHHHH
T ss_pred HHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 677777755 33 78888888888777776 55555554211 000000 00000 0 00000
Q ss_pred hhhchhhHHHHHHHHHcccCC--hhhHHHHHhcchhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcC
Q 010064 98 EAKGCVSKSEKLLDLLNLAEG--EAASEIKKKEEALEELKIVVKDLQSE-SEEQRREAASKVRSLAKENSETRVTLAMLG 174 (519)
Q Consensus 98 ~~~~~~~~~~~l~aLl~ls~~--e~~~~~i~~~g~~~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G 174 (519)
..+.+..+..++.+|.++... +.....+.+.|. ++.|++.|.++ ++.++..|+++|.+++..+++.+..+...|
T Consensus 97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~---i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g 173 (530)
T 1wa5_B 97 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV---VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD 173 (530)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTC---HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCC---HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC
Confidence 011144566777777776432 344456667787 99999999987 899999999999999988888899999999
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CCh
Q 010064 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNK 253 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k 253 (519)
++++|+.+|+++++.++..|+++|.||+..++.++..++..|+++.|+.++.+. +..++..++++|.+|+... +..
T Consensus 174 ~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 174 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN---KPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC---CHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC---CHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999999998889999999999999999999987 8999999999999999775 555
Q ss_pred hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHh
Q 010064 254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG--DMELSERILSILSNL 330 (519)
Q Consensus 254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nL 330 (519)
......+++|.|+.+|.. .+..++..|+++|.||+...+ ....+++.|+++.|+.+|. +..++..|+++|+||
T Consensus 251 ~~~~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYS----MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp CHHHHGGGHHHHHHHTTC----CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHhHHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 555668999999999987 689999999999999998764 6777888999999999995 455999999999999
Q ss_pred cC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064 331 VS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRAS 409 (519)
Q Consensus 331 s~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~ 409 (519)
+. .++....+.+ .|+++.|+.+|. ++++.++..|+|+|.||+.+++...+.+++.|++|.|+.++.++++.++..|.
T Consensus 327 ~~~~~~~~~~~~~-~~~l~~L~~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 404 (530)
T 1wa5_B 327 VTGNDLQTQVVIN-AGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404 (530)
T ss_dssp TTSCHHHHHHHHH-TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HcCCHHHHHHHHH-cchHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 98 5566677777 799999999999 56899999999999999998888888899999999999999999999999999
Q ss_pred HHHHHhhhc
Q 010064 410 RILECLRVD 418 (519)
Q Consensus 410 ~~L~~l~~~ 418 (519)
++|.+|...
T Consensus 405 ~aL~~l~~~ 413 (530)
T 1wa5_B 405 WAISNASSG 413 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999864
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=4.7e-30 Score=287.29 Aligned_cols=346 Identities=15% Similarity=0.071 Sum_probs=276.8
Q ss_pred hhHHHHHHHHHcccCC---hhhHHHHHhcchhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHh-cCCH
Q 010064 103 VSKSEKLLDLLNLAEG---EAASEIKKKEEALEELKIVVKDLQSE--SEEQRREAASKVRSLAKENSETRVTLAM-LGAI 176 (519)
Q Consensus 103 ~~~~~~l~aLl~ls~~---e~~~~~i~~~g~~~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i 176 (519)
..+..++.+|++++.. +.....+.+.+....++.++++|.++ +.+.+..|++.|..|+.. ++.|..++. .|++
T Consensus 345 ~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~I 423 (810)
T 3now_A 345 GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASI 423 (810)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchH
Confidence 4566777788888532 22222332222234477888888887 789999999999999954 578888875 7999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCCh-----------------------------hhH---HHHHhcCcHHHHHHh
Q 010064 177 PPLAGMLDFQLADSQISSLYALLNLGIGND-----------------------------LNK---AAIVKAGAVHKMLKL 224 (519)
Q Consensus 177 ~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~-----------------------------~nk---~~iv~aG~v~~Lv~l 224 (519)
|+||.+|++++..++..++++|.||+.+++ .++ ..++++|++|.|+.+
T Consensus 424 p~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~L 503 (810)
T 3now_A 424 HALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL 503 (810)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999999999999998643 233 688999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHH---
Q 010064 225 IESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFI--- 301 (519)
Q Consensus 225 L~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l--- 301 (519)
++++ ++.+++.|+++|.|++.+++++..+++.|++|+|+.+|.+ ++...+..|+|+|.||+.+.+....+
T Consensus 504 L~s~---s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~ 576 (810)
T 3now_A 504 AKTE---SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITINPEVSFSGQ 576 (810)
T ss_dssp HTCC---CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSCHHHHTTTH
T ss_pred HcCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCChhhhhcch
Confidence 9998 8999999999999999988899999999999999999998 68899999999999998765432221
Q ss_pred HhcCcHHHHHHHcCCH---HHHHHHHHHHHHhcCC-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064 302 LETDLIRYLLEMLGDM---ELSERILSILSNLVST-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS 377 (519)
Q Consensus 302 ~~~g~v~~Lv~lL~~~---~v~~~Al~~L~nLs~~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~ 377 (519)
...+++++|+.+|.++ ..+..|+++|.||+.. ++.+..+++ .|+++.|+++|. ++++.+|+.|+++|+||+.+
T Consensus 577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~-s~~~~Vq~~A~~~L~NLa~~- 653 (810)
T 3now_A 577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMS- 653 (810)
T ss_dssp HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHH-SCCTTHHHHHHHHHHHHTTS-
T ss_pred hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCC-
Confidence 1246999999999643 2456899999999995 678889998 799999999999 67899999999999999997
Q ss_pred hhhHHHHHH-cCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc-C-CCccccc-CCCcccccccccCccccCCCCCCCCCC
Q 010064 378 YGDRQAMIE-AGIASALLELTLLGSTLAQKRASRILECLRVD-K-GKQVSGT-YGGNLVAAAAVSAPICGSSSSTSTNPN 453 (519)
Q Consensus 378 ~~~~~~i~~-~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~-~-~~~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~ 453 (519)
++.+..+.+ .|+++.|+.|+..++..+|+.|+++|++|... + +.+.... +|| -.|+.
T Consensus 654 ~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~--------I~~Lv----------- 714 (810)
T 3now_A 654 EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW--------LDILH----------- 714 (810)
T ss_dssp HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH--------HHHHH-----------
T ss_pred hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC--------HHHHH-----------
Confidence 456666665 79999999999999999999999999999963 2 2222211 221 01111
Q ss_pred CcchhhhhHhhhhhHHHHHHHHHHHHHH
Q 010064 454 GVAKECLEEEEDMMSEEKKAVKQLVQQS 481 (519)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s 481 (519)
.++..++++++++|..++.|++..+
T Consensus 715 ---~LL~s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 715 ---TLIANPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp ---HHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHCCCCHHHHHHHHHHHHHHHhCC
Confidence 1445567888999999999998744
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=9.8e-29 Score=266.95 Aligned_cols=304 Identities=17% Similarity=0.175 Sum_probs=268.2
Q ss_pred hhhHHHHHHHHHcccC-ChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064 102 CVSKSEKLLDLLNLAE-GEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~-~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv 180 (519)
+..|.+++++|.|++. +++++..+++.|+ ++.|+++|.+++.+++..|+++|.+|+.+++..|..+.+.|++++|+
T Consensus 115 ~~lq~~Aa~aL~nias~~~e~~~~vv~~Ga---Ip~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll 191 (510)
T 3ul1_B 115 SPIQFESAWALTNIASGTSEQTKAVVDGGA---IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 191 (510)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCC---HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHH
Confidence 4567889999999964 5678888889998 99999999999999999999999999998889999999999999999
Q ss_pred HhhcCCC-----HHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hh
Q 010064 181 GMLDFQL-----ADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KP 254 (519)
Q Consensus 181 ~lL~s~~-----~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~ 254 (519)
.+|...+ ..++..++++|.|++.+...........|++|.|++++.++ +..++..++++|.+|+..++. ..
T Consensus 192 ~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~~~A~~aL~~L~~~~~~~~~ 268 (510)
T 3ul1_B 192 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERIE 268 (510)
T ss_dssp HHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHHhhchhhhHH
Confidence 9998743 45788999999999996545455555578999999999998 899999999999999987654 45
Q ss_pred hhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhc
Q 010064 255 IIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLV 331 (519)
Q Consensus 255 ~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs 331 (519)
.+...|+++.|+.+|.+ .+..++..++++|.||+..++ +...+++.|+++.|+.+|.+ .++++.|+++|+||+
T Consensus 269 ~i~~~g~i~~Lv~lL~~----~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~ 344 (510)
T 3ul1_B 269 MVVKKGVVPQLVKLLGA----TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344 (510)
T ss_dssp HHHTTTCHHHHHHHHTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHhcccchhhhhhhcC----CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 56789999999999998 699999999999999998776 67788899999999999964 459999999999999
Q ss_pred C-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064 332 S-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRAS 409 (519)
Q Consensus 332 ~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~ 409 (519)
. .++.+..+.+ .|+++.|+.+|. ++++.++..|+|+|+||+.+ +.+++..+.+.|+++.|++++...+++++..+.
T Consensus 345 a~~~~~~~~v~~-~g~i~~Lv~lL~-~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L 422 (510)
T 3ul1_B 345 AGRQDQIQQVVN-HGLVPFLVGVLS-KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 422 (510)
T ss_dssp TSCHHHHHHHHH-TTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred cCcHHHHHHHHh-cCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHH
Confidence 8 6667777888 799999999999 67899999999999999974 567788899999999999999999999999999
Q ss_pred HHHHHhhh
Q 010064 410 RILECLRV 417 (519)
Q Consensus 410 ~~L~~l~~ 417 (519)
.+|.++..
T Consensus 423 ~aL~nil~ 430 (510)
T 3ul1_B 423 DAISNIFQ 430 (510)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998873
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=1.8e-28 Score=265.97 Aligned_cols=304 Identities=17% Similarity=0.179 Sum_probs=268.4
Q ss_pred hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv 180 (519)
+..+.+++++|.|++.+ ..+...+.+.|+ ++.|+.+|.+++.+++..|+++|.+|+.+++.+|..+.+.|++++|+
T Consensus 134 ~~~q~~Aa~aL~nia~~~~~~~~~vv~~Ga---ip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll 210 (529)
T 3tpo_A 134 SPIQFESAWALTNIASGTSEQTKAVVDGGA---IPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLL 210 (529)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCC---HHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHH
Confidence 45677888999999765 566778888888 99999999999999999999999999998889999999999999999
Q ss_pred HhhcCCC-----HHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hh
Q 010064 181 GMLDFQL-----ADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KP 254 (519)
Q Consensus 181 ~lL~s~~-----~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~ 254 (519)
.+|..++ ..+...++++|.|++.+...........|++|.|+.++.++ ++.++..++++|.+++..++. ..
T Consensus 211 ~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~~~a~~aL~~l~~~~~~~~~ 287 (529)
T 3tpo_A 211 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERIE 287 (529)
T ss_dssp HTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC---cHHHHHHHHHHHHHhhhhhhhhHH
Confidence 9997643 45788999999999997555555555678999999999998 899999999999999987654 55
Q ss_pred hhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhc
Q 010064 255 IIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLV 331 (519)
Q Consensus 255 ~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs 331 (519)
.+...|++|.|+.+|.+ .+..++..|+.+|.||+.+++ +...+++.|+++.|+.+|.+ ++++..|+++|+||+
T Consensus 288 ~v~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~ 363 (529)
T 3tpo_A 288 MVVKKGVVPQLVKLLGA----TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 363 (529)
T ss_dssp HHHTTTCHHHHHHHHTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHhcC----CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 66789999999999998 699999999999999998765 77788899999999999964 459999999999999
Q ss_pred C-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064 332 S-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRAS 409 (519)
Q Consensus 332 ~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~ 409 (519)
. .++.+..+.+ .|+++.|+.+|. ++++.++..|+|+|+||+.+ +.+++..+.+.|+|+.|++++...+++++..+.
T Consensus 364 ~~~~~~~~~v~~-~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L 441 (529)
T 3tpo_A 364 AGRQDQIQQVVN-HGLVPFLVGVLS-KADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 441 (529)
T ss_dssp TSCHHHHHHHHH-TTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred cccHHHHHHHHh-cCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHH
Confidence 8 6666777788 799999999999 67899999999999999974 567788899999999999999999999999999
Q ss_pred HHHHHhhh
Q 010064 410 RILECLRV 417 (519)
Q Consensus 410 ~~L~~l~~ 417 (519)
.+|.++..
T Consensus 442 ~aL~nil~ 449 (529)
T 3tpo_A 442 DAISNIFQ 449 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999873
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=4e-26 Score=240.07 Aligned_cols=303 Identities=18% Similarity=0.185 Sum_probs=261.5
Q ss_pred hhhHHHHHHHHHccc---CChhhHHHHHhc-chhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCH
Q 010064 102 CVSKSEKLLDLLNLA---EGEAASEIKKKE-EALEELKIVVKDLQSE-SEEQRREAASKVRSLAKENSETRVTLAMLGAI 176 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls---~~e~~~~~i~~~-g~~~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i 176 (519)
+..+..++..|.++. .++..+..+ +. +. ++.|++.|.++ +...+..|+++|.+++..+++....+.+.|++
T Consensus 34 ~~~r~~A~~~L~~l~~~~~~~~~~~~~-~~~~~---i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 109 (450)
T 2jdq_A 34 PEQQLSATQKFRKLLSKEPNPPIDEVI-STPGV---VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAV 109 (450)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCHHHHH-TSTTH---HHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHH-HcCCc---HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCH
Confidence 445666776776652 233334433 44 66 99999999988 89999999999999998777788888899999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcC-CCCCCHHHHHHHHHHHHHhccCC--CCh
Q 010064 177 PPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIES-PVAPNPSVSEAIVANFLGLSALD--SNK 253 (519)
Q Consensus 177 ~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s-~~~~~~~~~~~a~~aL~~LS~~~--~~k 253 (519)
+.|+.+|+++++.+++.|+++|.||+..++.++..+++.|+++.|+.++++ . +..++..++++|.+++... ..+
T Consensus 110 ~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~ 186 (450)
T 2jdq_A 110 PIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN---RLTMTRNAVWALSNLCRGKSPPPE 186 (450)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC---CHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999999999888899999999999999999995 4 7899999999999999764 333
Q ss_pred hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHh
Q 010064 254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP-SNISFILETDLIRYLLEMLG--DMELSERILSILSNL 330 (519)
Q Consensus 254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~-~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nL 330 (519)
..+. .+++|.|+.++.+ .+..++..++++|.||+... ++...+++.|+++.|+.+|. +++++..|+++|+||
T Consensus 187 ~~~~-~~~l~~L~~~l~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 187 FAKV-SPCLNVLSWLLFV----SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp GGGT-GGGHHHHHHHTTC----CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 3333 8899999999987 68999999999999999875 47777888999999999996 456999999999999
Q ss_pred cCC-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064 331 VST-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRAS 409 (519)
Q Consensus 331 s~~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~ 409 (519)
+.. ++.++.+.+ .|+++.|+.+|. +.++.++..|+++|.||+.+++...+.+++.|++|.|+.++.++++.+|..|.
T Consensus 262 ~~~~~~~~~~~~~-~~~l~~L~~ll~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 262 VTGDDIQTQVILN-CSALQSLLHLLS-SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp TTSCHHHHHHHHT-TTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred hhCChHHHHHHHH-CccHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 984 445566777 699999999999 57899999999999999998888888899999999999999999999999999
Q ss_pred HHHHHhhhc
Q 010064 410 RILECLRVD 418 (519)
Q Consensus 410 ~~L~~l~~~ 418 (519)
++|.++...
T Consensus 340 ~~L~~l~~~ 348 (450)
T 2jdq_A 340 WAITNATSG 348 (450)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 999999854
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.95 E-value=1.4e-26 Score=250.07 Aligned_cols=304 Identities=20% Similarity=0.208 Sum_probs=269.2
Q ss_pred hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv 180 (519)
+..+..++.+|.+++.+ +.++..+...|+ ++.|+++|.+++..++..|+++|.+|+..++.++..+...|++++|+
T Consensus 132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~---i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll 208 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGTSENTKVVIDHGA---VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLL 208 (528)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCCc---HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHH
Confidence 45677888899999875 677777877787 99999999999999999999999999988888999999999999999
Q ss_pred Hhh-cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh-hhhhh
Q 010064 181 GML-DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK-PIIGS 258 (519)
Q Consensus 181 ~lL-~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k-~~I~~ 258 (519)
.+| .+.+..++..++++|.||+... .+.......|++|.|+.++.++ +..++..++++|.+|+...+.+ ..+.+
T Consensus 209 ~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 284 (528)
T 4b8j_A 209 AQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSN---DEEVLTDACWALSYLSDGTNDKIQAVIE 284 (528)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTHHHHHHHHTTCC---CHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999 6689999999999999999864 4444555689999999999988 8999999999999999776543 56678
Q ss_pred CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC---CHHHHHHHHHHHHHhcC-C
Q 010064 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG---DMELSERILSILSNLVS-T 333 (519)
Q Consensus 259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~---~~~v~~~Al~~L~nLs~-~ 333 (519)
.|+++.|+.+|.. .+..++..|+++|.||+.+.+ ....+++.|+++.|+.+|. ++.++..|+++|+||+. .
T Consensus 285 ~g~v~~Lv~lL~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~ 360 (528)
T 4b8j_A 285 AGVCPRLVELLLH----PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 360 (528)
T ss_dssp TTCHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSC
T ss_pred cCHHHHHHHHHcC----CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCC
Confidence 9999999999998 689999999999999998665 6777889999999999994 45699999999999998 5
Q ss_pred cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064 334 PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL 412 (519)
Q Consensus 334 ~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L 412 (519)
++....+.+ .|+++.|+.+|. ++++.++..|+++|.||+.. +++.+..+.+.|+++.|+.++..+++.++..|..+|
T Consensus 361 ~~~~~~~~~-~~~i~~L~~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L 438 (528)
T 4b8j_A 361 KDQIQAVIN-AGIIGPLVNLLQ-TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438 (528)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 566777788 799999999998 56899999999999999986 677888899999999999999999999999999999
Q ss_pred HHhhhc
Q 010064 413 ECLRVD 418 (519)
Q Consensus 413 ~~l~~~ 418 (519)
.+|...
T Consensus 439 ~~l~~~ 444 (528)
T 4b8j_A 439 ENILKV 444 (528)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999843
No 19
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=1.3e-26 Score=249.12 Aligned_cols=306 Identities=17% Similarity=0.135 Sum_probs=258.2
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG 181 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~ 181 (519)
+..+..++.+|.+++.++.++..+.+.|+ ++.|+++|++++...+..|++.|.+|+..++..+..+.+.|++|.|+.
T Consensus 74 ~~~~~~a~~~L~~ls~~~~~~~~i~~~g~---i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 150 (529)
T 1jdh_A 74 VETARCTAGTLHNLSHHREGLLAIFKSGG---IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 150 (529)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHcCC---HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHH
Confidence 45677788899999988888888888877 999999999999999999999999999887788888989999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCC
Q 010064 182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGA 261 (519)
Q Consensus 182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~ga 261 (519)
+|++++..++..++.+|.|++.++++++..+++.|+++.|+.+++++. .......++.+|.+|+..++++..+.+.|+
T Consensus 151 ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~ 228 (529)
T 1jdh_A 151 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 228 (529)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTSTTHHHHHHHTTH
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC--hHHHHHHHHHHHHHHhcCcccHHHHHHCCC
Confidence 999999999999999999999988999999999999999999998763 466777888999999998888888888888
Q ss_pred hHHHHHHhhcC-----------------------------------CCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcC
Q 010064 262 VPFLVKTLKNS-----------------------------------DKKVSPQAKQDALRALYNLSIFPS-NISFILETD 305 (519)
Q Consensus 262 i~~LV~lL~~~-----------------------------------~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g 305 (519)
++.|+.++... ....+++++..|+++|.||+.++. ++..+.+.|
T Consensus 229 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 308 (529)
T 1jdh_A 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308 (529)
T ss_dssp HHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 87777666542 012578888999999999988754 888899999
Q ss_pred cHHHHHHHcCC----HHHHHHHHHHHHHhcCC-cc---cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064 306 LIRYLLEMLGD----MELSERILSILSNLVST-PE---GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS 377 (519)
Q Consensus 306 ~v~~Lv~lL~~----~~v~~~Al~~L~nLs~~-~e---~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~ 377 (519)
+++.|+.+|.+ +++++.|+.+|+||+.. ++ .+..+.+ .|+++.|+.+|.+..++.++..++|+|.|++.+
T Consensus 309 ~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~-~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~- 386 (529)
T 1jdh_A 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC- 386 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH-TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-
T ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-cCChhHHHHHhccccchHHHHHHHHHHHHHhcC-
Confidence 99999999942 57999999999999884 33 4667888 799999999999544569999999999999987
Q ss_pred hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010064 378 YGDRQAMIEAGIASALLELTLLGSTLAQKRASRILEC 414 (519)
Q Consensus 378 ~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~ 414 (519)
+.+++.+.+.|++|.|+.++.++++.+|+.|.|++.+
T Consensus 387 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 387 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp GGGHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence 5667889999999999999999999999999999887
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2.2e-26 Score=222.72 Aligned_cols=238 Identities=24% Similarity=0.311 Sum_probs=219.4
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCC
Q 010064 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSN 252 (519)
Q Consensus 174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~ 252 (519)
|.++.|+.+|++++++++..|+++|.+++..+++++..+++.|+++.|+.+++++ +..++..++++|.+++.. +++
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHcCChHH
Confidence 6799999999999999999999999999998788999999999999999999998 899999999999999987 677
Q ss_pred hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHH
Q 010064 253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI-FPSNISFILETDLIRYLLEMLGD--MELSERILSILSN 329 (519)
Q Consensus 253 k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~-~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~n 329 (519)
+..+.+.|+++.|+.++.+ .+..++..|+++|.||+. .++++..+++.|+++.|+.+|.+ ++++..++++|+|
T Consensus 79 ~~~~~~~~~i~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8889999999999999998 689999999999999995 45688889999999999999964 5699999999999
Q ss_pred hcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064 330 LVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRA 408 (519)
Q Consensus 330 Ls~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A 408 (519)
|+. .++.+..+.+ .|+++.|+.+|. ++++.++..|+++|.||+.+++..++.+.+.|+++.|++++.++++.+++.|
T Consensus 155 l~~~~~~~~~~~~~-~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 232 (252)
T 4hxt_A 155 IASGPDEAIKAIVD-AGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEA 232 (252)
T ss_dssp HTTSCHHHHHHHHH-TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred HHcCCHHHHHHHHH-CcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHH
Confidence 998 5555677777 799999999999 6789999999999999999888889999999999999999999999999999
Q ss_pred HHHHHHhhhcCC
Q 010064 409 SRILECLRVDKG 420 (519)
Q Consensus 409 ~~~L~~l~~~~~ 420 (519)
.++|.+|.....
T Consensus 233 ~~~L~~l~~~~~ 244 (252)
T 4hxt_A 233 QRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHTCB
T ss_pred HHHHHHHHcCCC
Confidence 999999996543
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=2.9e-26 Score=246.34 Aligned_cols=303 Identities=22% Similarity=0.221 Sum_probs=266.8
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhc-chhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKE-EALEELKIVVKDLQSE-SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPL 179 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~-g~~~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~L 179 (519)
+..+..++..|.+++.++.++..+... +. ++.|++.|.++ +.+.+..|+..|++|+.. ++++..+.+.|++++|
T Consensus 31 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~---i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L 106 (529)
T 1jdh_A 31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQM---VSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPAL 106 (529)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHhCcch---HHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHH
Confidence 567888889999999888777665433 55 99999999755 889999999999999976 4799999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCChhhhhh
Q 010064 180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSNKPIIGS 258 (519)
Q Consensus 180 v~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~k~~I~~ 258 (519)
+.+|+++++.++..++++|.||+.+++.++..+.+.|++|.|+++++++ +..++..++.+|.+++.. ++++..+.+
T Consensus 107 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~---~~~~~~~~~~~L~~la~~~~~~~~~i~~ 183 (529)
T 1jdh_A 107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQILAYGNQESKLIILA 183 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC---CHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999997778899999999999999999998 889999999999999874 567888889
Q ss_pred CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCccc
Q 010064 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEG 336 (519)
Q Consensus 259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~ 336 (519)
.|+++.|+.++... .....+..++.+|.||+.+++++..+++.|+++.|+.++.+ ++++..++++|.||+.....
T Consensus 184 ~~~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 260 (529)
T 1jdh_A 184 SGGPQALVNIMRTY---TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260 (529)
T ss_dssp TTHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred CCCHHHHHHHHHhC---ChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh
Confidence 99999999999985 67778888999999999998999999999999999999964 56899999999999985432
Q ss_pred HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcC--CHHHHHHHHHHHHH
Q 010064 337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG--STLAQKRASRILEC 414 (519)
Q Consensus 337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~g--s~~~~~~A~~~L~~ 414 (519)
.. .. .++++.|+++|. +.++.+++.|+++|.||+.++++.++.+.+.|++|.|++++.+. ++.++..|.++|.+
T Consensus 261 ~~--~~-~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 261 QE--GM-EGLLGTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp CS--CC-HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hH--HH-HhHHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 22 12 478999999998 67899999999999999998888999999999999999999863 37999999999999
Q ss_pred hhhc
Q 010064 415 LRVD 418 (519)
Q Consensus 415 l~~~ 418 (519)
|...
T Consensus 337 l~~~ 340 (529)
T 1jdh_A 337 LTSR 340 (529)
T ss_dssp HTSS
T ss_pred HHcC
Confidence 9854
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.95 E-value=6.5e-26 Score=238.41 Aligned_cols=304 Identities=20% Similarity=0.207 Sum_probs=264.5
Q ss_pred hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv 180 (519)
+..+..++.+|.+++.. ..+...+.+.|. ++.|++.|++++...+..|+++|.+|+..++..+..+.+.|++++|+
T Consensus 79 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~---i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 155 (450)
T 2jdq_A 79 CTLQFESAWVLTNIASGNSLQTRIVIQAGA---VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLL 155 (450)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhCCC---HHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence 45677888889898764 455555656676 99999999999999999999999999988888999999999999999
Q ss_pred HhhcC-CCHHHHHHHHHHHHHhcCCC-hhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhh
Q 010064 181 GMLDF-QLADSQISSLYALLNLGIGN-DLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIG 257 (519)
Q Consensus 181 ~lL~s-~~~~~~~~a~~aL~NLa~~~-~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~ 257 (519)
.+|++ .+..++..++++|.||+.+. +..+..++ .|++|.|+.++.++ +..++..++++|.+|+... +.+..+.
T Consensus 156 ~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~ 231 (450)
T 2jdq_A 156 QLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS---DTDVLADACWALSYLSDGPNDKIQAVI 231 (450)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC---CHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC---CHHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 99996 78999999999999999764 33333333 78999999999988 8999999999999999764 4466677
Q ss_pred hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-C
Q 010064 258 SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS-T 333 (519)
Q Consensus 258 ~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~ 333 (519)
..|+++.|+.++.. .+..++..|+++|.||+...+ ....+++.|+++.|+.+|.+ +.++..|+++|+||+. .
T Consensus 232 ~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~ 307 (450)
T 2jdq_A 232 DAGVCRRLVELLMH----NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN 307 (450)
T ss_dssp HTTTHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred HcCcHHHHHHHHCC----CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 89999999999987 689999999999999998876 45667888999999999965 4599999999999997 6
Q ss_pred cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064 334 PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL 412 (519)
Q Consensus 334 ~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L 412 (519)
++..+.+.+ .++++.|+.+|. ++++.++..|+|+|.||+.+ +++..+.+++.|++|.|++++..+++.++..|.++|
T Consensus 308 ~~~~~~~~~-~~~l~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 385 (450)
T 2jdq_A 308 RAQIQTVID-ANIFPALISILQ-TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGL 385 (450)
T ss_dssp HHHHHHHHH-TTHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 677777887 699999999998 57899999999999999975 567788888999999999999999999999999999
Q ss_pred HHhhhc
Q 010064 413 ECLRVD 418 (519)
Q Consensus 413 ~~l~~~ 418 (519)
.++...
T Consensus 386 ~~l~~~ 391 (450)
T 2jdq_A 386 ENILRL 391 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999854
No 23
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=5.6e-26 Score=219.91 Aligned_cols=237 Identities=24% Similarity=0.333 Sum_probs=218.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
.++.|++.|.+++.+.+..|++.|.+++..+++++..+.+.|+++.|+.+|++++++++..++++|.||+.+++.++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 48999999999999999999999999998887899999999999999999999999999999999999999889999999
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc-cCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS-ALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS-~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
++.|+++.|+.+++++ +..++..++++|.+|+ ..++++..+.+.|+++.|++++.+ .++.++..|+++|.||
T Consensus 83 ~~~~~i~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTST---DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANI 155 (252)
T ss_dssp HHTTHHHHHHHHTTCS---SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence 9999999999999988 8999999999999999 556778888899999999999998 6899999999999999
Q ss_pred cCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHH
Q 010064 292 SIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKAS 367 (519)
Q Consensus 292 s~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~ 367 (519)
+...+ +...+++.|+++.|+.+|.+ ++++..|+++|.||+. .++.+..+.+ .|+++.|++++. ++++.+++.|+
T Consensus 156 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~-~~~~~v~~~a~ 233 (252)
T 4hxt_A 156 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLT-STDSEVQKEAQ 233 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGG-CSCHHHHHHHH
T ss_pred HcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHC-CCcHHHHHHHH
Confidence 98665 66788899999999999964 5699999999999998 6677778888 799999999999 67899999999
Q ss_pred HHHHHHhcCCh
Q 010064 368 YVLMVMAHKSY 378 (519)
Q Consensus 368 ~~L~nL~~~~~ 378 (519)
++|.||+...+
T Consensus 234 ~~L~~l~~~~~ 244 (252)
T 4hxt_A 234 RALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHTCB
T ss_pred HHHHHHHcCCC
Confidence 99999998643
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.95 E-value=1e-25 Score=243.72 Aligned_cols=305 Identities=17% Similarity=0.168 Sum_probs=268.6
Q ss_pred hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv 180 (519)
+..+..++.+|.+++.+ +.....+...|+ ++.|+++|.+++..++..|+++|.+|+..++.++..+...|++++|+
T Consensus 145 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~---i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~ 221 (530)
T 1wa5_B 145 EMLQLEAAWALTNIASGTSAQTKVVVDADA---VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL 221 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTC---HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHCCC---HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHH
Confidence 45677888899999865 456667767787 99999999999999999999999999988788999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhC
Q 010064 181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSS 259 (519)
Q Consensus 181 ~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~ 259 (519)
.+|.+.+..++..++++|.||+.+...........|++|.|+.++.++ +..++..++++|.+|+... +....+.+.
T Consensus 222 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 298 (530)
T 1wa5_B 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM---DTETLVDACWAISYLSDGPQEAIQAVIDV 298 (530)
T ss_dssp HGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC---CHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 999999999999999999999986535555666789999999999988 8999999999999999764 346667788
Q ss_pred CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-Ccc
Q 010064 260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS-TPE 335 (519)
Q Consensus 260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~e 335 (519)
|+++.|+.+|.. .+..++..|+++|.||+...+ ....+++.|+++.|+.+|.+ ..++..|+++|+||+. .++
T Consensus 299 ~~v~~Lv~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~ 374 (530)
T 1wa5_B 299 RIPKRLVELLSH----ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374 (530)
T ss_dssp TCHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CcHHHHHHHHCC----CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999987 689999999999999998765 66777889999999999964 4599999999999997 666
Q ss_pred cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-Ch--hhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064 336 GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SY--GDRQAMIEAGIASALLELTLLGSTLAQKRASRIL 412 (519)
Q Consensus 336 ~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~--~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L 412 (519)
..+.+++ .++++.|+.+|. ++++.++..|+|+|.||+.. ++ +..+.+.+.|++|.|+.++.++++.++..|.++|
T Consensus 375 ~~~~~~~-~~~l~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL 452 (530)
T 1wa5_B 375 QIQAVID-ANLIPPLVKLLE-VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 452 (530)
T ss_dssp HHHHHHH-TTCHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHH-CCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7777887 799999999998 57899999999999999985 34 6788888999999999999999999999999999
Q ss_pred HHhhhc
Q 010064 413 ECLRVD 418 (519)
Q Consensus 413 ~~l~~~ 418 (519)
.++...
T Consensus 453 ~~l~~~ 458 (530)
T 1wa5_B 453 ENILKM 458 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999854
No 25
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=2.3e-26 Score=223.78 Aligned_cols=234 Identities=23% Similarity=0.335 Sum_probs=214.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
.++.+++.|++++.+.+..|++.|+++...+.+.+..+.+.|+++.|+.+|+++++.++..++++|.||+.+++.++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 37889999999999999999999987555566888899999999999999999999999999999999999889999999
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh-hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK-PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k-~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
++.|++|.|+.+++++ ++.+++.++++|.+|+..++.+ ..+.+.|++|.|+.+|.+ .+..++..|+++|.||
T Consensus 93 ~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 93 IDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNI 165 (252)
T ss_dssp HHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence 9999999999999998 8999999999999999988887 788899999999999988 6999999999999999
Q ss_pred cCCCc-cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHH
Q 010064 292 SIFPS-NISFILETDLIRYLLEMLG--DMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKAS 367 (519)
Q Consensus 292 s~~~~-n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~ 367 (519)
+..++ +...+++.|+++.|+.+|. ++++++.|+++|.||+. +++.+..+.+ .|+++.|++++. ++++.+++.|+
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~-~~~~~v~~~A~ 243 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQS-HENEKIQKEAQ 243 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTT-CSSSHHHHTHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhC-CCCHHHHHHHH
Confidence 98664 7778889999999999995 45699999999999997 6777788888 799999999999 67899999999
Q ss_pred HHHHHHhc
Q 010064 368 YVLMVMAH 375 (519)
Q Consensus 368 ~~L~nL~~ 375 (519)
++|.||+.
T Consensus 244 ~~L~~l~~ 251 (252)
T 4db8_A 244 EALEKLQS 251 (252)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 99999974
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.94 E-value=7.6e-26 Score=250.87 Aligned_cols=303 Identities=22% Similarity=0.220 Sum_probs=267.0
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhc-chhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKE-EALEELKIVVKDLQSE-SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPL 179 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~-g~~~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~L 179 (519)
+..+..++.+|.+++.++.++..+... +. ++.|++.|.++ +.+.+..|+..|++|+... +++..+.+.|+++.|
T Consensus 28 ~~vr~~A~~~L~~La~~~~~~~~i~~~~~~---i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~g~i~~L 103 (644)
T 2z6h_A 28 QVVVNKAAVMVHQLSKKEASRHAIMRSPQM---VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPAL 103 (644)
T ss_dssp HHHHHHHHHHHHHHHTSTTHHHHHTTCHHH---HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhHHHHHhccCh---HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCHHHH
Confidence 567888889999999887776666433 45 99999999865 8899999999999999764 799999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc-CCCChhhhhh
Q 010064 180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA-LDSNKPIIGS 258 (519)
Q Consensus 180 v~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~-~~~~k~~I~~ 258 (519)
+.+|+++++.++..|+++|.||+..++.++..+++.|++|.|+++|+++ +..++..++.+|.+|+. +++++..+.+
T Consensus 104 v~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~La~~~~~~~~~i~~ 180 (644)
T 2z6h_A 104 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQILAYGNQESKLIILA 180 (644)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC---CHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999999999999999997778888999999999999999998 78888888889999996 5677889999
Q ss_pred CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCccc
Q 010064 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEG 336 (519)
Q Consensus 259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~ 336 (519)
.|+++.|+.++.+. .....+..++.+|.||+.+++++..+++.|+++.|+.++.+ .+++..++++|.||+.....
T Consensus 181 ~g~v~~Lv~lL~~~---~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~ 257 (644)
T 2z6h_A 181 SGGPQALVNIMRTY---TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 257 (644)
T ss_dssp TTHHHHHHHHHTTC---CCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT
T ss_pred cCChHHHHHHHHcC---ChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh
Confidence 99999999999985 56788999999999999998999999999999999999964 56999999999999974322
Q ss_pred HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcC-C-HHHHHHHHHHHHH
Q 010064 337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG-S-TLAQKRASRILEC 414 (519)
Q Consensus 337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~g-s-~~~~~~A~~~L~~ 414 (519)
. ... .++++.|+.+|. +.++.+++.|+++|.+|+.+++++++.+.+.|+++.|++++.+. + +.++..|.++|.+
T Consensus 258 ~--~~~-~~~i~~Lv~lL~-~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 258 Q--EGM-EGLLGTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333 (644)
T ss_dssp C--CSC-HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h--hhh-hhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 1 112 378999999999 67899999999999999998888999999999999999999974 3 7999999999999
Q ss_pred hhhc
Q 010064 415 LRVD 418 (519)
Q Consensus 415 l~~~ 418 (519)
|...
T Consensus 334 L~~~ 337 (644)
T 2z6h_A 334 LTSR 337 (644)
T ss_dssp HTSS
T ss_pred HhcC
Confidence 9853
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.94 E-value=2.1e-25 Score=247.41 Aligned_cols=307 Identities=18% Similarity=0.146 Sum_probs=268.0
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG 181 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~ 181 (519)
...+..++.+|.+++.++.++..+.+.|+ ++.|+++|.+++...+..|+++|.+|+..+...+..+.+.|+++.|+.
T Consensus 71 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~---i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~ 147 (644)
T 2z6h_A 71 VETARCTAGTLHNLSHHREGLLAIFKSGG---IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 147 (644)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHTTTH---HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHcCC---HHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHH
Confidence 45677788889999988888888888777 999999999999999999999999999887788888889999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCC
Q 010064 182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGA 261 (519)
Q Consensus 182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~ga 261 (519)
+|+++++.++..++.+|.||+.++++++..+++.|+++.|+.++++.. ...+++.++.+|++|+..++++..+.+.|+
T Consensus 148 lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~ 225 (644)
T 2z6h_A 148 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 225 (644)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHTTCTTHHHHHHHTTH
T ss_pred HHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC--hHHHHHHHHHHHHHHhcCcccHHHHHHCCC
Confidence 999999999999999999999888999999999999999999999873 467888999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC-CcccHH
Q 010064 262 VPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVS-TPEGRK 338 (519)
Q Consensus 262 i~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~-~~e~r~ 338 (519)
++.|+.++.. .+..++..++++|.||+...... ....++++.|+.+|. ++++++.|+++|+||+. .++.+.
T Consensus 226 l~~L~~ll~~----~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~ 299 (644)
T 2z6h_A 226 MQALGLHLTD----PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299 (644)
T ss_dssp HHHHHTTTTC----SCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhc----CCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999988 68999999999999999764321 122378999999995 45699999999999998 457788
Q ss_pred HHhhcCCcchhhhhhccCCC-CHHHHHHHHHHHHHHhcCCh---hhHHHHHHcCcHHHHHHHhhcCC-HHHHHHHHHHHH
Q 010064 339 AISRVPDAFPILVDVLNWTD-SPGCQEKASYVLMVMAHKSY---GDRQAMIEAGIASALLELTLLGS-TLAQKRASRILE 413 (519)
Q Consensus 339 ~i~~~~g~i~~Lv~lL~~s~-~~~~qe~A~~~L~nL~~~~~---~~~~~i~~~G~i~~Ll~Ll~~gs-~~~~~~A~~~L~ 413 (519)
.+.+ .|+++.|+++|.+.+ .+.+++.|+++|.||+.... ..+..+.+.|++|.|++++.+++ +.+++.|.++|.
T Consensus 300 ~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~ 378 (644)
T 2z6h_A 300 MVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 378 (644)
T ss_dssp HHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHH
Confidence 8888 799999999998433 37999999999999997533 23556889999999999999875 799999999999
Q ss_pred HhhhcCC
Q 010064 414 CLRVDKG 420 (519)
Q Consensus 414 ~l~~~~~ 420 (519)
+|...+.
T Consensus 379 nLa~~~~ 385 (644)
T 2z6h_A 379 NLALCPA 385 (644)
T ss_dssp HHTTSGG
T ss_pred HHccCHH
Confidence 9985443
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=9.2e-26 Score=219.56 Aligned_cols=235 Identities=23% Similarity=0.302 Sum_probs=215.8
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc-CCC
Q 010064 173 LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA-LDS 251 (519)
Q Consensus 173 ~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~-~~~ 251 (519)
....+.++.+|.+++++++..|+++|.++...+++++..+++.|++|.|+.+|+++ ++.++..++++|.+++. +++
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCHH
Confidence 34689999999999999999999999887765688899999999999999999998 89999999999999997 567
Q ss_pred ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccH-HHHHhcCcHHHHHHHcC--CHHHHHHHHHHHH
Q 010064 252 NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNI-SFILETDLIRYLLEMLG--DMELSERILSILS 328 (519)
Q Consensus 252 ~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~-~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~ 328 (519)
++..+.+.|+++.|+.+|.+ .+..++..|+++|.||+.+++++ ..+++.|+++.|+.+|. +++++..|+++|+
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 78889999999999999998 68999999999999999998877 88899999999999995 4569999999999
Q ss_pred HhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHH
Q 010064 329 NLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKR 407 (519)
Q Consensus 329 nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~ 407 (519)
||+. .++.+..+.+ .|+++.|+++|. ++++.+++.|+++|.||+..+++.++.+.+.|+++.|+.++.++++.++..
T Consensus 164 ~l~~~~~~~~~~~~~-~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~ 241 (252)
T 4db8_A 164 NIASGGNEQIQAVID-AGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241 (252)
T ss_dssp HHTTSCHHHHHHHHH-TTCHHHHHHGGG-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHT
T ss_pred HHHcCChHHHHHHHH-CCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHH
Confidence 9998 5566677777 799999999999 678999999999999999888888999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 010064 408 ASRILECLR 416 (519)
Q Consensus 408 A~~~L~~l~ 416 (519)
|.++|.+|.
T Consensus 242 A~~~L~~l~ 250 (252)
T 4db8_A 242 AQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 999999886
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.93 E-value=1.3e-24 Score=246.02 Aligned_cols=303 Identities=17% Similarity=0.145 Sum_probs=253.8
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG 181 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~ 181 (519)
...+..++.+|.+++.++.++..+.+.|+ ++.|+++|.+++...+..|+++|.+|+..+...+..+.+.|+++.|+.
T Consensus 207 ~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~---I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~ 283 (780)
T 2z6g_A 207 VETARCTSGTLHNLSHHREGLLAIFKSGG---IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 283 (780)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHcCC---HHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHH
Confidence 34566777788888888777888877777 999999999999999999999999999887788888889999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCC
Q 010064 182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGA 261 (519)
Q Consensus 182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~ga 261 (519)
+|++++..++..++.+|.+|+..+++++..+++.|+++.|+.++++.. .....+.++.+|++|+..+.++..+.+.|+
T Consensus 284 lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~ 361 (780)
T 2z6g_A 284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 361 (780)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSTTHHHHHHHTTH
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHHHhhcChHHHHHHHHhch
Confidence 999999999999999999999988999999999999999999999872 456677888999999988888888888887
Q ss_pred hHHHHHHhhcC-----------------------------------CCCCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcC
Q 010064 262 VPFLVKTLKNS-----------------------------------DKKVSPQAKQDALRALYNLSIFP-SNISFILETD 305 (519)
Q Consensus 262 i~~LV~lL~~~-----------------------------------~~~~~~~~~~~A~~aL~nLs~~~-~n~~~l~~~g 305 (519)
++.|+.++... ....+..++..|+++|.||+..+ +++..+++.|
T Consensus 362 l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g 441 (780)
T 2z6g_A 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 441 (780)
T ss_dssp HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 77777665431 12267888999999999999876 4788888999
Q ss_pred cHHHHHHHcCC----HHHHHHHHHHHHHhcCC-cc---cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064 306 LIRYLLEMLGD----MELSERILSILSNLVST-PE---GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS 377 (519)
Q Consensus 306 ~v~~Lv~lL~~----~~v~~~Al~~L~nLs~~-~e---~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~ 377 (519)
+++.|+.+|.+ .++++.|+++|+||+.. ++ .+..+.. .++++.|+++|.+...+.+++.|+|+|.||+.+
T Consensus 442 ~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~-~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~- 519 (780)
T 2z6g_A 442 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC- 519 (780)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH-TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-
T ss_pred CHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-
Confidence 99999999943 26999999999999873 33 2556777 789999999999555569999999999999986
Q ss_pred hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHH
Q 010064 378 YGDRQAMIEAGIASALLELTLLGSTLAQKRASRI 411 (519)
Q Consensus 378 ~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~ 411 (519)
+.++..+.+.|++|.|++++.++++.+++.|.|+
T Consensus 520 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~a 553 (780)
T 2z6g_A 520 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553 (780)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhc
Confidence 5667889999999999999987665555444333
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.93 E-value=2e-24 Score=244.57 Aligned_cols=306 Identities=18% Similarity=0.178 Sum_probs=264.6
Q ss_pred HHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc
Q 010064 105 KSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD 184 (519)
Q Consensus 105 ~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~ 184 (519)
+..++.+|.+++....++..+.+.|+ ++.|+.+|.+++...+..|+++|.+|+...... ....++++.|+.+|+
T Consensus 336 ~~~a~~aL~~Ls~~~~~~~~i~~~g~---l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~ 409 (780)
T 2z6g_A 336 LWTTSRVLKVLSVCSSNKPAIVEAGG---MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLG 409 (780)
T ss_dssp HHHHHHHHHHHHTSTTHHHHHHHTTH---HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcChHHHHHHHHhch---HHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHc
Confidence 34456678888877788888888887 999999999999999999999999999765321 112468999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC----hhhhhhCC
Q 010064 185 FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN----KPIIGSSG 260 (519)
Q Consensus 185 s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~----k~~I~~~g 260 (519)
+.++.++..|+++|.||+.+++.++..+++.|+++.|+++|....+ ...++..++++|.+|+..... +..+...|
T Consensus 410 ~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~ 488 (780)
T 2z6g_A 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD-REDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488 (780)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCC-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC
Confidence 9999999999999999999888999999999999999999976311 348999999999999875432 45777899
Q ss_pred ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC------------------------
Q 010064 261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD------------------------ 316 (519)
Q Consensus 261 ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~------------------------ 316 (519)
+++.|+.+|... ....++..|+++|.||+.++.++..+.+.|+++.|+.+|.+
T Consensus 489 ~l~~L~~lL~~~---~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~ 565 (780)
T 2z6g_A 489 GLPVVVKLLHPP---SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 565 (780)
T ss_dssp CHHHHHHTTSTT---CCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCH
T ss_pred CHHHHHHHhcCC---ChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccCh
Confidence 999999999884 45699999999999999988888889999999999999843
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHH
Q 010064 317 MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLEL 396 (519)
Q Consensus 317 ~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~L 396 (519)
.++++.++.+|++|+.+++++..+.. .|+++.|+++|. +.++.++..|+.+|++|+.. ++.+..+.+.|+++.|+.+
T Consensus 566 ~~v~~~a~~aL~~La~~~~~~~~l~~-~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~L 642 (780)
T 2z6g_A 566 EEIVEACTGALHILARDIHNRIVIRG-LNTIPLFVQLLY-SPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTEL 642 (780)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHH-TCCHHHHHHGGG-CSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHH-CCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHH
Confidence 23677899999999999889888888 799999999999 67899999999999999865 6788999999999999999
Q ss_pred hhcCCHHHHHHHHHHHHHhhhcCCCcc
Q 010064 397 TLLGSTLAQKRASRILECLRVDKGKQV 423 (519)
Q Consensus 397 l~~gs~~~~~~A~~~L~~l~~~~~~~~ 423 (519)
+.++++.++..|.++|.++..+....+
T Consensus 643 l~~~~~~Vr~~A~~aL~~l~~~~~~~~ 669 (780)
T 2z6g_A 643 LHSRNEGVATYAAAVLFRMSEDKPQDY 669 (780)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTSCTTH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCChHhh
Confidence 999999999999999999997765443
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.92 E-value=9e-25 Score=211.39 Aligned_cols=196 Identities=21% Similarity=0.203 Sum_probs=174.9
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064 134 LKIVVKDLQSESE--EQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA 211 (519)
Q Consensus 134 l~~Lv~~L~s~~~--~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~ 211 (519)
++.+|++|++++. +.|..|++.|++|+..++++|..+.+.|+||+||++|+++++++|+.|+++|.||+.++++||..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 8999999999987 88999999999999988899999999999999999999999999999999999999988999999
Q ss_pred HHhcCcHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhh---cCC---------CCCCH
Q 010064 212 IVKAGAVHKMLKLIE-SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLK---NSD---------KKVSP 278 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~-s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~---~~~---------~~~~~ 278 (519)
|+++|+||+|+++|+ ++ +..+++.++++||+||..+++|..|.+. ++|.|+.++. ++. ...+.
T Consensus 90 I~~~GaI~~Lv~lL~~~~---~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTR---DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHcCCHHHHHHHHccCC---CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999998 45 7899999999999999999999999874 6999998663 110 12477
Q ss_pred HHHHHHHHHHHHhcCCC-ccHHHHHhc-CcHHHHHHHcC--------CHHHHHHHHHHHHHhcCC
Q 010064 279 QAKQDALRALYNLSIFP-SNISFILET-DLIRYLLEMLG--------DMELSERILSILSNLVST 333 (519)
Q Consensus 279 ~~~~~A~~aL~nLs~~~-~n~~~l~~~-g~v~~Lv~lL~--------~~~v~~~Al~~L~nLs~~ 333 (519)
.++.+|+.+|+||+... +++..+.+. |+|+.|+.++. +...+|.|+.+|.||+..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999999865 689999876 77899999993 235899999999999863
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.9e-24 Score=235.68 Aligned_cols=339 Identities=13% Similarity=0.115 Sum_probs=263.6
Q ss_pred hHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHh
Q 010064 104 SKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGM 182 (519)
Q Consensus 104 ~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~l 182 (519)
.+..++..|+.+....... +....+..+.+++.|..++.+.+..|+..|..|+. +++.|..++. .|+++.|+.+
T Consensus 310 ir~lAavvL~KL~~~~~~~----~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~l 384 (778)
T 3opb_A 310 VQIYSALVLVKTWSFTKLT----CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTM 384 (778)
T ss_dssp GHHHHHHHHHHHTGGGTCT----TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCC----cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHH
Confidence 3555666666664322111 11222347788888888887889999999999995 4689999988 5679999999
Q ss_pred hcC-CCHHHHHHHHHHHHHhcCCChh--------------------------------------hHHHHHhcCcHHHHHH
Q 010064 183 LDF-QLADSQISSLYALLNLGIGNDL--------------------------------------NKAAIVKAGAVHKMLK 223 (519)
Q Consensus 183 L~s-~~~~~~~~a~~aL~NLa~~~~~--------------------------------------nk~~iv~aG~v~~Lv~ 223 (519)
++. .+..+...++.+|.||+...+. ++..++++|++|.|+.
T Consensus 385 lk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~ 464 (778)
T 3opb_A 385 IKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKR 464 (778)
T ss_dssp HTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHH
Confidence 995 7778899999999999963221 5678889999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCH---HHHHHHHHHHHHhcCCCccHHH
Q 010064 224 LIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSP---QAKQDALRALYNLSIFPSNISF 300 (519)
Q Consensus 224 lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~---~~~~~A~~aL~nLs~~~~n~~~ 300 (519)
+++++ ++.+++.++++|.+|+.++++|..++++|+++.|+.+|.+. +. .++..|+++|.+|+...+....
T Consensus 465 Ll~S~---s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~----~~~~~~~k~~AA~ALArLlis~np~~~ 537 (778)
T 3opb_A 465 EMHNL---SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK----QDIGEPIRILGCRALTRMLIFTNPGLI 537 (778)
T ss_dssp HGGGS---CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC-------CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHcCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC----CCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 99998 89999999999999999999999999999999999999884 33 3899999999999976653332
Q ss_pred HHh---cCcHHHHHHHcCC-HH--------------H-HHHHHHHHHHhcCCc-----ccHHHHhhcCCcchhhhhhccC
Q 010064 301 ILE---TDLIRYLLEMLGD-ME--------------L-SERILSILSNLVSTP-----EGRKAISRVPDAFPILVDVLNW 356 (519)
Q Consensus 301 l~~---~g~v~~Lv~lL~~-~~--------------v-~~~Al~~L~nLs~~~-----e~r~~i~~~~g~i~~Lv~lL~~ 356 (519)
+-. .|+|++|+.+|.. ++ + ..+|+.+|+||+..+ +.|+.|+...|+|+.|+++|.
T Consensus 538 f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~- 616 (778)
T 3opb_A 538 FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML- 616 (778)
T ss_dssp SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG-
T ss_pred cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh-
Confidence 211 3899999999972 22 1 669999999999975 457878883389999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhH-HHHHH------cCcHHHHHHHhhcCCHHHHHHHHHHHHHhh-hcCCCcccccCC
Q 010064 357 TDSPGCQEKASYVLMVMAHKSYGDR-QAMIE------AGIASALLELTLLGSTLAQKRASRILECLR-VDKGKQVSGTYG 428 (519)
Q Consensus 357 s~~~~~qe~A~~~L~nL~~~~~~~~-~~i~~------~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~-~~~~~~~~~~~g 428 (519)
++++.+|++|+++++||+.++ +.+ +.+.. .+.++.|+.|+..++...|..|.++|+++. .++.....
T Consensus 617 s~n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~---- 691 (778)
T 3opb_A 617 DENVPLQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE---- 691 (778)
T ss_dssp CSSHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH----
T ss_pred CCCHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH----
Confidence 678999999999999999864 433 34432 224889999999999999999999999996 44322111
Q ss_pred CcccccccccCccccCCCCCCCCCCCcc---hhhhh--HhhhhhHHHHHHHHHHHH
Q 010064 429 GNLVAAAAVSAPICGSSSSTSTNPNGVA---KECLE--EEEDMMSEEKKAVKQLVQ 479 (519)
Q Consensus 429 g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~v~ 479 (519)
+.. +++|.+ ..|.+ ++++++|||.+++.||+.
T Consensus 692 ---------------ll~----~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 692 ---------------LLT----KKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp ---------------HTT----CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred ---------------HHH----ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 111 222333 26777 899999999999999985
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=209.77 Aligned_cols=195 Identities=19% Similarity=0.237 Sum_probs=175.5
Q ss_pred CHHHHHHhhcCCCH--HHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc-CCC
Q 010064 175 AIPPLAGMLDFQLA--DSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA-LDS 251 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~--~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~-~~~ 251 (519)
.+|+||++|+++++ +++..|+++|.||+.+++++|..|++.|+||.|+++|+++ +..+++.|+++|.+|+. +++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~---~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ---NEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999887 8999999999999988899999999999999999999998 89999999999999998 467
Q ss_pred ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC----------------
Q 010064 252 NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG---------------- 315 (519)
Q Consensus 252 ~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~---------------- 315 (519)
+|..|.+.|+||.||++|.+. .+..++..|+.+|+||+..++++..+++ +++++|+.++.
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~---~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQT---RDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred HHHHHHHcCCHHHHHHHHccC---CCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccc
Confidence 899999999999999999852 6899999999999999999999988887 47999998662
Q ss_pred --CHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCC-----CCHHHHHHHHHHHHHHhcC
Q 010064 316 --DMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWT-----DSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 316 --~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s-----~~~~~qe~A~~~L~nL~~~ 376 (519)
+.++.++|..+|.||++ ++++|+.|.+..|+|+.|+.+++.. .+.+.+|.|+.+|.||+..
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 34699999999999998 6799999998778899999999731 2567899999999999975
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.9e-22 Score=220.89 Aligned_cols=308 Identities=15% Similarity=0.121 Sum_probs=250.3
Q ss_pred HHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChh------------------
Q 010064 105 KSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSE------------------ 165 (519)
Q Consensus 105 ~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~------------------ 165 (519)
+..++..|.-++.+...|+.+++.. ..++.|++.++. ++......++..|.||+...+.
T Consensus 351 ~~~AvEgLaYLSl~~~VKe~L~~d~--~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~ 428 (778)
T 3opb_A 351 VEMSVEALAYLSLKASVKIMIRSNE--SFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXX 428 (778)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHCH--HHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhCH--HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhcccc
Confidence 5666677777888888888886542 349999999985 6777888999999999874321
Q ss_pred --------------------hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhh
Q 010064 166 --------------------TRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLI 225 (519)
Q Consensus 166 --------------------~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL 225 (519)
++..+.+.|+||+|+.+++++++.+++.++++|.||+. +.++|..+++.|+++.|+.++
T Consensus 429 ~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL 507 (778)
T 3opb_A 429 XPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYL 507 (778)
T ss_dssp ------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHT
T ss_pred CcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHH
Confidence 46677889999999999999999999999999999998 599999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh---CCChHHHHHHhhcCCCCC-----------CHHHHHHHHHHHHHh
Q 010064 226 ESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS---SGAVPFLVKTLKNSDKKV-----------SPQAKQDALRALYNL 291 (519)
Q Consensus 226 ~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~---~gai~~LV~lL~~~~~~~-----------~~~~~~~A~~aL~nL 291 (519)
.+........++.|+.+|.++....+....+.. .|+||+|+.+|... +.. +.-.+..|+.||.||
T Consensus 508 ~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~-~~~~~~~l~~~~~~~~l~~feAL~ALTNL 586 (778)
T 3opb_A 508 ANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRS-TPVDDNPLHNDEQIKLTDNYEALLALTNL 586 (778)
T ss_dssp TCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCS-SSCSSCC---CCCCCHHHHHHHHHHHHHH
T ss_pred hcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCC-CCcccccccccccccHHHHHHHHHHHHHH
Confidence 987210012789999999999876654444421 49999999999831 111 113377999999999
Q ss_pred cCCCc-----cHHHHHhc-CcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccH-HHHhhcC-----CcchhhhhhccCC
Q 010064 292 SIFPS-----NISFILET-DLIRYLLEMLGD--MELSERILSILSNLVSTPEGR-KAISRVP-----DAFPILVDVLNWT 357 (519)
Q Consensus 292 s~~~~-----n~~~l~~~-g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r-~~i~~~~-----g~i~~Lv~lL~~s 357 (519)
+..++ .+..++.. |+++.|..+|.+ ..++..|+++++||+.+++++ +.+.+.. +.++.|+.++. +
T Consensus 587 As~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~-s 665 (778)
T 3opb_A 587 ASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ-L 665 (778)
T ss_dssp HHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG-C
T ss_pred hcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc-C
Confidence 99874 36778885 999999999953 459999999999999988876 3554311 13788999998 7
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHHc-CcHHHHHHHhhc--CCHHHHHHHHHHHHHhhh
Q 010064 358 DSPGCQEKASYVLMVMAHKSYGDRQAMIEA-GIASALLELTLL--GSTLAQKRASRILECLRV 417 (519)
Q Consensus 358 ~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~-G~i~~Ll~Ll~~--gs~~~~~~A~~~L~~l~~ 417 (519)
++..+|++|+|+|.|++...+..++.+++. ++++.|++++.+ +++.++.++..++.+|.+
T Consensus 666 ~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 666 SDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999987667777888776 899999999999 899999999999999996
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=4.9e-22 Score=187.96 Aligned_cols=195 Identities=22% Similarity=0.302 Sum_probs=176.8
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc-CC
Q 010064 172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA-LD 250 (519)
Q Consensus 172 ~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~-~~ 250 (519)
..|+.++|+.+|++++++++..|+++|.||+.+++.++..+++.|++|.|+.+|+++ ++.+++.++++|.+++. ++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCc
Confidence 468899999999999999999999999999988899999999999999999999998 89999999999999995 45
Q ss_pred CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHH
Q 010064 251 SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG--DMELSERILSIL 327 (519)
Q Consensus 251 ~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L 327 (519)
+++..+.+.|+++.|+.+|.+ .+..++..|+++|.||+.+.+ ++..+++.|+++.|+.+|. +++++..|+++|
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL 162 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcC----CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 678888899999999999998 689999999999999997655 6778889999999999996 456999999999
Q ss_pred HHhcCC-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhc
Q 010064 328 SNLVST-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAH 375 (519)
Q Consensus 328 ~nLs~~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~ 375 (519)
.||+.. ++.+..+.+ .|+++.|++++. ++++.+++.|+++|.+|+.
T Consensus 163 ~~l~~~~~~~~~~~~~-~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 163 SNIASGGNEQKQAVKE-AGALEKLEQLQS-HENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTSCHHHHHHHHH-TTHHHHHHHGGG-CSCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCcHHHHHHHH-CCCHHHHHHHHh-CCCHHHHHHHHHHHHHHhc
Confidence 999995 778888888 799999999999 6899999999999999985
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=5e-22 Score=187.90 Aligned_cols=192 Identities=23% Similarity=0.313 Sum_probs=177.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
.+.|+.+|++++.+.+..|++.|.+|+..+++.+..+.+.|+++.|+.+|+++++.++..|+++|.||+.+++.++..++
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 78999999999999999999999999988889999999999999999999999999999999999999988899999999
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
+.|++|.|+.+|+++ +..++..++++|.+++... +.+..+.+.|+++.|+.++.+ .+..++..|+++|.||+
T Consensus 94 ~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 94 DAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIA 166 (210)
T ss_dssp HTTCHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCC---cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHH
Confidence 999999999999998 8999999999999999654 445677889999999999998 68999999999999999
Q ss_pred CC-CccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC
Q 010064 293 IF-PSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVS 332 (519)
Q Consensus 293 ~~-~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~ 332 (519)
.. ++++..+.+.|+++.|+.++. ++++++.|+++|.+|+.
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 88 458888889999999999995 45699999999999985
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=4.9e-20 Score=185.02 Aligned_cols=181 Identities=15% Similarity=0.199 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHh
Q 010064 146 EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG-MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKL 224 (519)
Q Consensus 146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~-lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~l 224 (519)
.+.+..|+..|..++.. .++...+...|++|+|+. +|+++++.++..|+++|.|++.+++.++..+++.|++|+|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 35788999999999954 578888899999999999 9999999999999999999999989999999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC-CccHHHHH
Q 010064 225 IESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFIL 302 (519)
Q Consensus 225 L~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~l~ 302 (519)
|+++. +..+++.|+++|.+++.+. +....+.+.|++|.|+.+|.+ .+..++..|+|+|.||+.+ ++.+..++
T Consensus 133 L~~~~--~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~----~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 133 LDRDA--CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ----QVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HccCC--CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 98531 6899999999999998654 446677889999999999998 7999999999999999876 45889999
Q ss_pred hcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCC
Q 010064 303 ETDLIRYLLEMLGD--MELSERILSILSNLVST 333 (519)
Q Consensus 303 ~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~ 333 (519)
+.|++++|+.+|.+ .++++.|+.+|.||+..
T Consensus 207 ~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999964 45999999999999985
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.81 E-value=5.2e-19 Score=177.53 Aligned_cols=184 Identities=16% Similarity=0.145 Sum_probs=167.1
Q ss_pred hhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064 103 VSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVK-DLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG 181 (519)
Q Consensus 103 ~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~-~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~ 181 (519)
..+..++..|..+.++..+...+.+.|+ ++.|+. +|.+++.++|..|+++|.+++.+++..+..+.+.|++|+|+.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~---l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSG---MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTH---HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCC---HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 3466777788888888778888878888 999999 999999999999999999999999899999999999999999
Q ss_pred hhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCChhhhhhC
Q 010064 182 MLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSNKPIIGSS 259 (519)
Q Consensus 182 lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~k~~I~~~ 259 (519)
+|++ ++..++..|+|+|.||+.+++.....++++|++|.|+.+|+++ +..++..|+++|.+|+.. ++.+..+++.
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~---d~~v~~~A~~aLs~L~~~~~~~~~~vv~~ 208 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGHPEHKGTLCSM 208 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence 9986 5899999999999999998888899999999999999999998 899999999999998764 5568888999
Q ss_pred CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 010064 260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS 296 (519)
Q Consensus 260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~ 296 (519)
|+++.|+.+|.. .+.+++..|+.+|.||+....
T Consensus 209 g~i~~Lv~LL~~----~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 209 GMVQQLVALVRT----EHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp THHHHHHHHHTS----CCSTHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcC----CChhHHHHHHHHHHHHHhCCh
Confidence 999999999998 688999999999999998744
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.50 E-value=4.2e-12 Score=136.98 Aligned_cols=277 Identities=16% Similarity=0.146 Sum_probs=217.3
Q ss_pred hhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCh
Q 010064 130 ALEELKIVVKDLQSES-EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGND 206 (519)
Q Consensus 130 ~~~~l~~Lv~~L~s~~-~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~ 206 (519)
+-+.++.|+..|.+.. .+.|+.|+..|+.++++ ++..+ ..++++.|+..|+. .|.++-..++.+|.|+...++
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 3456899999997664 67899999999999964 55544 35789999999976 688899999999999876543
Q ss_pred h-----------------hHHHH-HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--Chhhhhh-CCChHHH
Q 010064 207 L-----------------NKAAI-VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPIIGS-SGAVPFL 265 (519)
Q Consensus 207 ~-----------------nk~~i-v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~k~~I~~-~gai~~L 265 (519)
. +...+ .+.+.|+.|+.+|++. +-.++..++..|..|..+.+ ++..|.. .++|+.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~---df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~L 171 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF---DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRL 171 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc---cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHH
Confidence 2 22233 3468899999999998 89999999999998876543 4677774 6999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCCH------HHHHHHHHHHHHhcC-CcccH
Q 010064 266 VKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGDM------ELSERILSILSNLVS-TPEGR 337 (519)
Q Consensus 266 V~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~~------~v~~~Al~~L~nLs~-~~e~r 337 (519)
|.+|.. ....++..++..|.+|+.++.++++++.. |+++.|+.++..+ .+.+-|+.+|.||.. ++.++
T Consensus 172 v~lL~d----~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ 247 (651)
T 3grl_A 172 MDLLAD----SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQ 247 (651)
T ss_dssp HGGGGC----SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhC----chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHH
Confidence 999998 68999999999999999999988888876 9999999999432 278999999999999 55577
Q ss_pred HHHhhcCCcchhhhhhccCCCC-----HHHHHH---HHHHHHHHhcC------ChhhHHHHHHcCcHHHHHHHhhcC--C
Q 010064 338 KAISRVPDAFPILVDVLNWTDS-----PGCQEK---ASYVLMVMAHK------SYGDRQAMIEAGIASALLELTLLG--S 401 (519)
Q Consensus 338 ~~i~~~~g~i~~Lv~lL~~s~~-----~~~qe~---A~~~L~nL~~~------~~~~~~~i~~~G~i~~Ll~Ll~~g--s 401 (519)
..+.+ .++++.|..++..... +....+ +..++.-|+.. +..++..+.+.|+++.|++++... .
T Consensus 248 ~~FrE-t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p 326 (651)
T 3grl_A 248 NFFKE-GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVP 326 (651)
T ss_dssp HHHHH-TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCC
T ss_pred HHHHH-cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCC
Confidence 77777 7999999999872211 112222 45556666654 234677899999999999999865 5
Q ss_pred HHHHHHHHHHHHHhhhc
Q 010064 402 TLAQKRASRILECLRVD 418 (519)
Q Consensus 402 ~~~~~~A~~~L~~l~~~ 418 (519)
..++..|..+++-+...
T Consensus 327 ~~i~~~Al~tla~~irg 343 (651)
T 3grl_A 327 ADILTETINTVSEVIRG 343 (651)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 67888888888887743
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.49 E-value=5.7e-12 Score=136.00 Aligned_cols=306 Identities=13% Similarity=0.092 Sum_probs=230.2
Q ss_pred hhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChh---------------
Q 010064 103 VSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSE--SEEQRREAASKVRSLAKENSE--------------- 165 (519)
Q Consensus 103 ~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~~--------------- 165 (519)
..|..++..|-.++.+ ++..+ ..++ ++.|+..|+.+ |.+....++..|.++...+..
T Consensus 37 eDRR~Av~~Lk~~sk~--y~~~V-g~~~---l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~ 110 (651)
T 3grl_A 37 DDRRNAVRALKSLSKK--YRLEV-GIQA---MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG 110 (651)
T ss_dssp HHHHHHHHHHHHTTTT--TTTHH-HHHT---HHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHH
T ss_pred hHHHHHHHHHHHHHHH--hHHHh-hhhh---HHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHH
Confidence 3455666666666532 33333 2233 89999999764 667777788888876544322
Q ss_pred --hHHHH-HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh-hHHHHHhc-CcHHHHHHhhcCCCCCCHHHHHHHH
Q 010064 166 --TRVTL-AMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL-NKAAIVKA-GAVHKMLKLIESPVAPNPSVSEAIV 240 (519)
Q Consensus 166 --~r~~l-~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~-nk~~iv~a-G~v~~Lv~lL~s~~~~~~~~~~~a~ 240 (519)
+.+.+ .+.+.|+.|+.+|++.+-.++..++..|..|+...+. +++.|+.+ ++++.|+.+|.+. ...++..++
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~---rE~iRneal 187 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS---REVIRNDGV 187 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS---SHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc---hHHHHHHHH
Confidence 22333 3478899999999999999999999999999987766 78889966 9999999999998 789999999
Q ss_pred HHHHHhccCCCChhhhhh-CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCH-
Q 010064 241 ANFLGLSALDSNKPIIGS-SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDM- 317 (519)
Q Consensus 241 ~aL~~LS~~~~~k~~I~~-~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~- 317 (519)
..|.+|+.....-..++. .|+++.|+.++...-......+..+++.+|.||..++. |+..+.+.|+++.|..+|..+
T Consensus 188 lLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~ 267 (651)
T 3grl_A 188 LLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGD 267 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCS
T ss_pred HHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCc
Confidence 999999988766555554 89999999999873111234688999999999999875 899999999999999998521
Q ss_pred -------HHHH---HHHHHHHHhcCC-------cccHHHHhhcCCcchhhhhhccCCC-CHHHHHHHHHHHHHHhcCChh
Q 010064 318 -------ELSE---RILSILSNLVST-------PEGRKAISRVPDAFPILVDVLNWTD-SPGCQEKASYVLMVMAHKSYG 379 (519)
Q Consensus 318 -------~v~~---~Al~~L~nLs~~-------~e~r~~i~~~~g~i~~Lv~lL~~s~-~~~~qe~A~~~L~nL~~~~~~ 379 (519)
.... .++.++.-|+.. ..+++++.+ .|++..|++++..++ ...++..|..++..+..+++.
T Consensus 268 ~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~ 346 (651)
T 3grl_A 268 ENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV 346 (651)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH
Confidence 1122 366777777662 235677888 799999999987432 467889999999999999999
Q ss_pred hHHHHHHcC---------cHHHHHHHhhc-CCHHHHHHHHHHHHHhhhc
Q 010064 380 DRQAMIEAG---------IASALLELTLL-GSTLAQKRASRILECLRVD 418 (519)
Q Consensus 380 ~~~~i~~~G---------~i~~Ll~Ll~~-gs~~~~~~A~~~L~~l~~~ 418 (519)
+++.+.+.. ++..|+.++.+ .....|-.|...++.+..+
T Consensus 347 ~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 347 NQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp HHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence 888887643 33334444433 4578888888888888844
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.28 E-value=1e-10 Score=115.17 Aligned_cols=223 Identities=11% Similarity=0.013 Sum_probs=171.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
++.|++.|.+++..++..|+..|..+.. .++++.|+.+|+++++.++..++++|.++........
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~---- 89 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED---- 89 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch----
Confidence 8899999999999999999999998862 1357899999999999999999999999985322111
Q ss_pred hcCcHHHHHH-hhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 214 KAGAVHKMLK-LIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 214 ~aG~v~~Lv~-lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
.+++.|.. ++.++ +..++..++.+|..+..... .....+++.|+.++.+ .++.++..|+++|.++.
T Consensus 90 --~l~~~L~~~~~~d~---~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d----~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 90 --NVFNILNNMALNDK---SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFD----KSTNVRRATAFAISVIN 156 (280)
T ss_dssp --HHHHHHHHHHHHCS---CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTC----SCHHHHHHHHHHHHTC-
T ss_pred --HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhC----CCHHHHHHHHHHHHhcC
Confidence 13445543 45666 78999999999988863221 1123468899999887 68999999999999875
Q ss_pred CCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064 293 IFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL 370 (519)
Q Consensus 293 ~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L 370 (519)
. ..+++.|+.+|.++ .++..|+++|.++.... ..+++.|+.++. ++++.++..|+++|
T Consensus 157 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~-d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 157 D----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQ-DKNEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTT-CSCHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 3 25889999999654 58999999999885321 246778888998 67899999999999
Q ss_pred HHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 371 MVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 371 ~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
.++.. ..++|.|+.++.+++ ++..|..+|..+..
T Consensus 217 ~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 217 SYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred HHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 98862 247899999998754 78888888887753
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=5.5e-10 Score=105.09 Aligned_cols=186 Identities=20% Similarity=0.162 Sum_probs=155.3
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC
Q 010064 173 LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN 252 (519)
Q Consensus 173 ~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~ 252 (519)
.+.++.|+.+|+++++.++..++.+|..+.. ..+++.|+.++.++ +..++..++.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~---~~~vr~~a~~aL~~~~----- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE---DAWVRRAAADALGQIG----- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS---CHHHHHHHHHHHHHHC-----
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCC---CHHHHHHHHHHHHhhC-----
Confidence 4578999999999999999999999998764 25899999999988 8999999999988764
Q ss_pred hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHh
Q 010064 253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNL 330 (519)
Q Consensus 253 k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nL 330 (519)
...+++.|+.+|.+ .++.++..|+++|.++.. ..+++.|+.+|.++ .++..|+.+|+++
T Consensus 79 -----~~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 79 -----DERAVEPLIKALKD----EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp -----CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 24678999999987 689999999999998853 35788999999654 5999999999988
Q ss_pred cCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHH
Q 010064 331 VSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASR 410 (519)
Q Consensus 331 s~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~ 410 (519)
.. ...++.|..++. +.++.++..|+.+|..+.. ..+++.|..++.++++.++..|..
T Consensus 140 ~~-----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~ 196 (211)
T 3ltm_A 140 GD-----------ERAVEPLIKALK-DEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVN 196 (211)
T ss_dssp CC-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CC-----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHH
Confidence 42 347788999998 6789999999999999853 237888999999999999999999
Q ss_pred HHHHhhhcC
Q 010064 411 ILECLRVDK 419 (519)
Q Consensus 411 ~L~~l~~~~ 419 (519)
+|..+....
T Consensus 197 aL~~~~~~~ 205 (211)
T 3ltm_A 197 YLETHKSFN 205 (211)
T ss_dssp HHHC-----
T ss_pred HHHhcCCCC
Confidence 999888543
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.20 E-value=1.8e-09 Score=100.68 Aligned_cols=182 Identities=20% Similarity=0.173 Sum_probs=154.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh
Q 010064 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK 253 (519)
Q Consensus 174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k 253 (519)
+..+.++++|+++++.++..|+.+|..+.. ...++.|++++.++ +..++..++.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~---~~~vr~~a~~~L~~~~------ 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE---DAWVRRAAADALGQIG------ 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHC------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCC---CHHHHHHHHHHHHhhC------
Confidence 457899999999999999999999998764 25789999999888 8999999998887764
Q ss_pred hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhc
Q 010064 254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLV 331 (519)
Q Consensus 254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs 331 (519)
...+++.|+.+|.+ .++.++..|+++|.++.. ..+++.|+.+|.++ .++..|+.+|+++.
T Consensus 74 ----~~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 74 ----DERAVEPLIKALKD----EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp ----CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred ----CHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 23578999999987 699999999999998753 34788899999654 48999999999875
Q ss_pred CCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHH
Q 010064 332 STPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRI 411 (519)
Q Consensus 332 ~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~ 411 (519)
. ...++.|..++. +.++.++..|+++|..+.. + .+++.|..++.++++.++..|..+
T Consensus 136 ~-----------~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~a 192 (201)
T 3ltj_A 136 D-----------ERAVEPLIKALK-DEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNY 192 (201)
T ss_dssp C-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2 357888999998 6789999999999999842 2 278899999999999999999999
Q ss_pred HHHhh
Q 010064 412 LECLR 416 (519)
Q Consensus 412 L~~l~ 416 (519)
|..+.
T Consensus 193 L~~l~ 197 (201)
T 3ltj_A 193 LETHK 197 (201)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 98875
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.20 E-value=6e-10 Score=104.87 Aligned_cols=186 Identities=20% Similarity=0.156 Sum_probs=153.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA 211 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~ 211 (519)
+.++.|++.|.+++..+|..|+..|..+.. ..+++.|+.+|.++++.++..++++|.++..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 348899999999999999999999987753 2578999999999999999999999999863
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
.++++.|+.++.++ ++.++..++.+|..+.. ..+++.|+.++.+ .++.++..|+.+|.++
T Consensus 80 ---~~~~~~L~~~l~~~---~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDE---DGWVRQSAAVALGQIGD----------ERAVEPLIKALKD----EDWFVRIAAAFALGEI 139 (211)
T ss_dssp ---GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Confidence 35789999999988 89999999999988742 4578999999987 7999999999999998
Q ss_pred cCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHH
Q 010064 292 SIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYV 369 (519)
Q Consensus 292 s~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~ 369 (519)
.. ..+++.|..++.++ .++..|+.+|..+.. ..+++.|..+++ ++++.++..|..+
T Consensus 140 ~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~A~~a 197 (211)
T 3ltm_A 140 GD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAE-TGTGFARKVAVNY 197 (211)
T ss_dssp CC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHH-HCCHHHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHh-CCCHHHHHHHHHH
Confidence 53 35788899999654 589999999998842 346778888888 5789999999999
Q ss_pred HHHHhcCCh
Q 010064 370 LMVMAHKSY 378 (519)
Q Consensus 370 L~nL~~~~~ 378 (519)
|.++...+.
T Consensus 198 L~~~~~~~~ 206 (211)
T 3ltm_A 198 LETHKSFNH 206 (211)
T ss_dssp HHC------
T ss_pred HHhcCCCCC
Confidence 999887643
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.17 E-value=1.5e-09 Score=106.83 Aligned_cols=199 Identities=13% Similarity=0.043 Sum_probs=155.3
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC
Q 010064 170 LAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL 249 (519)
Q Consensus 170 l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~ 249 (519)
....+.++.|+..|.++++.++..|+++|.++.. .++++.|+.+++++ +..++..++.+|..+...
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~---~~~vR~~A~~aL~~l~~~ 84 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDK---NYIRRDIGAFILGQIKIC 84 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCS---SHHHHHHHHHHHHHSCCC
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCC---CHHHHHHHHHHHHHhccc
Confidence 3456789999999999999999999999999873 24789999999998 899999999999888644
Q ss_pred CCChhhhhhCCChHHHHH-HhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHH
Q 010064 250 DSNKPIIGSSGAVPFLVK-TLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSI 326 (519)
Q Consensus 250 ~~~k~~I~~~gai~~LV~-lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~ 326 (519)
+.... ..++.|.+ ++.. .+..++..++++|.++...... ....+++.|+.+|.++ .++..|+.+
T Consensus 85 ~~~~~-----~l~~~L~~~~~~d----~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~a 151 (280)
T 1oyz_A 85 KKCED-----NVFNILNNMALND----KSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFA 151 (280)
T ss_dssp TTTHH-----HHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred cccch-----HHHHHHHHHHhcC----CCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 33211 12344443 3344 6899999999999998643211 1124678888888654 588999999
Q ss_pred HHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHH
Q 010064 327 LSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQK 406 (519)
Q Consensus 327 L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~ 406 (519)
|+++.. ..+++.|++++. +.++.++..|+++|..+....+ .+++.|+.++.++++.++.
T Consensus 152 L~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~ 210 (280)
T 1oyz_A 152 ISVIND-----------KATIPLLINLLK-DPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRI 210 (280)
T ss_dssp HHTC--------------CCHHHHHHHHT-CSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHH
T ss_pred HHhcCC-----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHH
Confidence 987653 358899999998 6789999999999999865433 3688999999999999999
Q ss_pred HHHHHHHHhh
Q 010064 407 RASRILECLR 416 (519)
Q Consensus 407 ~A~~~L~~l~ 416 (519)
.|.++|..+.
T Consensus 211 ~A~~aL~~~~ 220 (280)
T 1oyz_A 211 EAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 9999999886
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.16 E-value=1.4e-09 Score=101.53 Aligned_cols=182 Identities=20% Similarity=0.168 Sum_probs=153.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA 211 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~ 211 (519)
...+.+++.|.+++..+|..|+..|..+.. .+.++.|+.+|.++++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 347899999999999999999999987763 2478999999999999999999999998864
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
..+++.|+.++.++ ++.++..++.+|..+.. ..+++.|+.++.+ .++.++..|+++|.++
T Consensus 75 ---~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDE---DGWVRQSAAVALGQIGD----------ERAVEPLIKALKD----EDWFVRIAAAFALGEI 134 (201)
T ss_dssp ---GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHh
Confidence 25789999999988 89999999999987642 3578999999987 6999999999999998
Q ss_pred cCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHH
Q 010064 292 SIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYV 369 (519)
Q Consensus 292 s~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~ 369 (519)
.. ..+++.|+.++.++ .++..|+.+|.++.. ..+++.|..++. +.++.++..|..+
T Consensus 135 ~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~A~~a 192 (201)
T 3ltj_A 135 GD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAE-TGTGFARKVAVNY 192 (201)
T ss_dssp TC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHH-HCCHHHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHh-CCCHHHHHHHHHH
Confidence 53 45788899999654 599999999998832 346778888888 5789999999999
Q ss_pred HHHHh
Q 010064 370 LMVMA 374 (519)
Q Consensus 370 L~nL~ 374 (519)
|..+-
T Consensus 193 L~~l~ 197 (201)
T 3ltj_A 193 LETHK 197 (201)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 98764
No 47
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.07 E-value=1.4e-09 Score=123.81 Aligned_cols=274 Identities=13% Similarity=0.125 Sum_probs=196.7
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH----hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLA----MLGAIPPLAGMLDFQLADSQISSLYALLNLGIG 204 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~----~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~ 204 (519)
.+.+.++.|++.+.+++...+..|+.+|..++...+..-..-. -..+++.|+.+++++++.++..|+++|.++...
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4566799999999999999999999999999865432211000 123678888888889999999999999988865
Q ss_pred ChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCCCHHHHH
Q 010064 205 NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQ 282 (519)
Q Consensus 205 ~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~~~~~~~ 282 (519)
.+..-... -..+++.|+.++.++ +..++..++.+|..++..... +..+ .+.++.++.++.+ .+..++.
T Consensus 205 ~~~~~~~~-~~~~l~~l~~~~~d~---~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~----~~~~vr~ 274 (852)
T 4fdd_A 205 RTQALMLH-IDSFIENLFALAGDE---EPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQD----QDENVAL 274 (852)
T ss_dssp TCHHHHTS-HHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTC----SSHHHHH
T ss_pred ccHHHHHH-HHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccC----CcHHHHH
Confidence 33211111 125788899988887 899999999999888754221 1111 2477888888877 6889999
Q ss_pred HHHHHHHHhcCCCccHHHHH--hcCcHHHHHHHc-----------CC-----------H--HHHHHHHHHHHHhcCCccc
Q 010064 283 DALRALYNLSIFPSNISFIL--ETDLIRYLLEML-----------GD-----------M--ELSERILSILSNLVSTPEG 336 (519)
Q Consensus 283 ~A~~aL~nLs~~~~n~~~l~--~~g~v~~Lv~lL-----------~~-----------~--~v~~~Al~~L~nLs~~~e~ 336 (519)
.|+.++.+++........+. -...++.|+..+ .+ . .++..|..+|..|+....
T Consensus 275 ~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~- 353 (852)
T 4fdd_A 275 EACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR- 353 (852)
T ss_dssp HHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-
Confidence 99999999987653322211 124566666666 22 0 146778888888876321
Q ss_pred HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
..+.. ..++.+.+.+. +.++.+++.|+++|.+++.+..+.... .-..++|.|+.++.+.++.++..|.++|..+.
T Consensus 354 -~~~~~--~l~~~l~~~l~-~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~ 428 (852)
T 4fdd_A 354 -DELLP--HILPLLKELLF-HHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYA 428 (852)
T ss_dssp -GGGHH--HHHHHHHHHHT-CSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTH
T ss_pred -HHHHH--HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 22333 37778888888 568999999999999999875442221 23567999999999999999999999999988
Q ss_pred hc
Q 010064 417 VD 418 (519)
Q Consensus 417 ~~ 418 (519)
+.
T Consensus 429 ~~ 430 (852)
T 4fdd_A 429 HW 430 (852)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 48
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.02 E-value=3.5e-09 Score=120.51 Aligned_cols=300 Identities=11% Similarity=-0.012 Sum_probs=197.8
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG 181 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~ 181 (519)
...+..++.+|.++...... .+ .....+.++.+++.+.+++.+++..|+.+|..++...+..-.... .++++.++.
T Consensus 188 ~~vR~~A~~aL~~~~~~~~~--~~-~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~ 263 (852)
T 4fdd_A 188 PKIRSHAVACVNQFIISRTQ--AL-MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQ 263 (852)
T ss_dssp HHHHHHHHHHHHTTTTTTCH--HH-HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccH--HH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHH
Confidence 44566666666665433221 11 112234578888888889999999999999999976543211111 247788888
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh--cCcHHHHHHhhc-----------CCCC--------CCHHHHHHHH
Q 010064 182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVK--AGAVHKMLKLIE-----------SPVA--------PNPSVSEAIV 240 (519)
Q Consensus 182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~--aG~v~~Lv~lL~-----------s~~~--------~~~~~~~~a~ 240 (519)
.+++.++.++..|+.++.+++.. ...+..+.. ..++|.|+..+. +..+ .+..++..++
T Consensus 264 ~~~~~~~~vr~~a~e~l~~l~~~-~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~ 342 (852)
T 4fdd_A 264 RTQDQDENVALEACEFWLTLAEQ-PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSA 342 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTS-TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHH
T ss_pred HccCCcHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHH
Confidence 88889999999999999999974 333332211 145777777772 2000 0123567777
Q ss_pred HHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--H
Q 010064 241 ANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--E 318 (519)
Q Consensus 241 ~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~ 318 (519)
.+|..++.... ..+ -...++.|...+.+ .+...+..|+++|.+++........-.-..+++.|+..+.|+ .
T Consensus 343 ~~L~~la~~~~--~~~-~~~l~~~l~~~l~~----~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~ 415 (852)
T 4fdd_A 343 AALDVLANVYR--DEL-LPHILPLLKELLFH----HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL 415 (852)
T ss_dssp HHHHHHHHHHG--GGG-HHHHHHHHHHHHTC----SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHhcc--HHH-HHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 77777664321 111 12457777888876 689999999999999998764211112246788888888765 4
Q ss_pred HHHHHHHHHHHhcCCc-c-cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHH
Q 010064 319 LSERILSILSNLVSTP-E-GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLEL 396 (519)
Q Consensus 319 v~~~Al~~L~nLs~~~-e-~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~L 396 (519)
++..|+++|++++..- . ...... ...++.|++.|. +.++.+++.|+++|.+++......... .-.++++.|+.+
T Consensus 416 Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~-d~~~~vr~~a~~aL~~l~~~~~~~l~~-~l~~ll~~L~~~ 491 (852)
T 4fdd_A 416 VRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRIL-DSNKRVQEAACSAFATLEEEACTELVP-YLAYILDTLVFA 491 (852)
T ss_dssp HHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhhHhhHh-HHHHHHHHHHHH
Confidence 9999999999998621 1 111122 247788888887 568999999999999999642221111 125678888888
Q ss_pred hhcCCHHHHHHHHHHHHHhhh
Q 010064 397 TLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 397 l~~gs~~~~~~A~~~L~~l~~ 417 (519)
+..........+..++..+.+
T Consensus 492 l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 492 FSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp HHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHH
Confidence 887777666666677777663
No 49
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.99 E-value=3e-08 Score=108.51 Aligned_cols=277 Identities=15% Similarity=0.100 Sum_probs=176.6
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG 181 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~ 181 (519)
+..+..++.+|.++...+ ..+.+ ++.+.+.|.+.++.+|..|+.++.++...+++.- ...++++.|..
T Consensus 100 ~~ir~~AL~~L~~i~~~~-~~~~l--------~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~ 167 (591)
T 2vgl_B 100 PLIRALAVRTMGCIRVDK-ITEYL--------CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRD 167 (591)
T ss_dssp HHHHHHHHHHHHTCCSGG-GHHHH--------HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHH-HHHHH--------HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHH
Confidence 456677777777775222 22222 6678888999999999999999999987665432 23567899999
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCChhh---------HHHHHh----------------------------cCcHHHHHHh
Q 010064 182 MLDFQLADSQISSLYALLNLGIGNDLN---------KAAIVK----------------------------AGAVHKMLKL 224 (519)
Q Consensus 182 lL~s~~~~~~~~a~~aL~NLa~~~~~n---------k~~iv~----------------------------aG~v~~Lv~l 224 (519)
+|.++++.++..|+.+|..++..++.. -..++. ..+++.+..+
T Consensus 168 lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~ 247 (591)
T 2vgl_B 168 LIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPR 247 (591)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTC
T ss_pred HhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999865422 111221 1345666666
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhcc----CCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHH
Q 010064 225 IESPVAPNPSVSEAIVANFLGLSA----LDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISF 300 (519)
Q Consensus 225 L~s~~~~~~~~~~~a~~aL~~LS~----~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~ 300 (519)
+++. +..+...|+.++..+.. +++....+ -..+.+.|+.++. .++.++..|+.+|..+.......
T Consensus 248 l~~~---~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-----~d~~vr~~aL~~l~~i~~~~p~~-- 316 (591)
T 2vgl_B 248 LSHA---NSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-----GEPEVQYVALRNINLIVQKRPEI-- 316 (591)
T ss_dssp SCSS---TTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-----SCHHHHHHHHHHHHHHHHHCCST--
T ss_pred HcCC---ChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHhChHH--
Confidence 7776 78899999999999864 22222222 2345677776653 47888888999888886532110
Q ss_pred HHhcCcHHHHHHHcC-CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh
Q 010064 301 ILETDLIRYLLEMLG-DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG 379 (519)
Q Consensus 301 l~~~g~v~~Lv~lL~-~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~ 379 (519)
+.. .+..+..... +..++..++.+|.+|+... +... .++.|.+++. +.++.++..+++.+.+++...+.
T Consensus 317 -~~~-~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~-nv~~------iv~~L~~~l~-~~d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 317 -LKQ-EIKVFFVKYNDPIYVKLEKLDIMIRLASQA-NIAQ------VLAELKEYAT-EVDVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp -TTT-CTTTTSCCTTSCHHHHHHHHHHHHHTCCSS-THHH------HHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTCHH
T ss_pred -HHH-HHHhheeccCChHHHHHHHHHHHHHHCChh-hHHH------HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhChh
Confidence 000 1111111122 2347777777777776432 2222 3345666666 45677777777777777765432
Q ss_pred hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 380 DRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 380 ~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
.. ..+++.|++++.+....+...+...+..+.
T Consensus 387 ~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 387 SA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp HH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 11 235667777777666666666655555553
No 50
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.96 E-value=6e-09 Score=108.85 Aligned_cols=275 Identities=11% Similarity=0.096 Sum_probs=191.3
Q ss_pred chhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccC-hhh-HHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhc
Q 010064 129 EALEELKIVVKDLQSE--SEEQRREAASKVRSLAKEN-SET-RVTLAMLGAIPPLAGMLDFQ--LADSQISSLYALLNLG 202 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~-~~~-r~~l~~~G~i~~Lv~lL~s~--~~~~~~~a~~aL~NLa 202 (519)
.+.+.++.|++.+.++ +...+..|+.+|..++... +.. ...+ ..+++.++.+|+++ ++.++..+++++.++.
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 4566789999999888 8899999999999998643 111 1111 23678888888887 7999999999999976
Q ss_pred CCChhhH-HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCCCHH
Q 010064 203 IGNDLNK-AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKVSPQ 279 (519)
Q Consensus 203 ~~~~~nk-~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~~~~ 279 (519)
...+.+- ......-+++.|...+.++ +..++..++.+|..+...... ...+ ....++.++..+.. .+..
T Consensus 203 ~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~----~~~~ 274 (462)
T 1ibr_B 203 EFTKANFDKESERHFIMQVVCEATQCP---DTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKS----DIDE 274 (462)
T ss_dssp TTTHHHHTSHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHC----SSHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC----CchH
Confidence 4322221 0111112567777777776 889999999888887653221 1211 12678888888877 6889
Q ss_pred HHHHHHHHHHHhcCCCccH------------------HHHHh---cCcHHHHHHHcCC---------HHHHHHHHHHHHH
Q 010064 280 AKQDALRALYNLSIFPSNI------------------SFILE---TDLIRYLLEMLGD---------MELSERILSILSN 329 (519)
Q Consensus 280 ~~~~A~~aL~nLs~~~~n~------------------~~l~~---~g~v~~Lv~lL~~---------~~v~~~Al~~L~n 329 (519)
++..|+..+.+++...... ..+++ ...++.|+..|.+ ..++..|..+|..
T Consensus 275 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~ 354 (462)
T 1ibr_B 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence 9999999998887542000 00111 3356666677732 1378889999998
Q ss_pred hcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064 330 LVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY-GDRQAMIEAGIASALLELTLLGSTLAQKRA 408 (519)
Q Consensus 330 Ls~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A 408 (519)
|+..-. ..+.. .+++.+.+.+. +.++.+++.|+.++..++.+.. +..... -..++|.|+.++.+.++.+|..|
T Consensus 355 l~~~~~--~~~~~--~~~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a 428 (462)
T 1ibr_B 355 LATCCE--DDIVP--HVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTA 428 (462)
T ss_dssp HHHHTT--TTHHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHhcc--HHHHH--HHHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHH
Confidence 887322 23333 37777888888 6789999999999999997643 111111 15689999999999999999999
Q ss_pred HHHHHHhhhcC
Q 010064 409 SRILECLRVDK 419 (519)
Q Consensus 409 ~~~L~~l~~~~ 419 (519)
+++|..+.+.-
T Consensus 429 ~~~l~~~~~~~ 439 (462)
T 1ibr_B 429 AWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHHHHHhc
Confidence 99999999654
No 51
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.95 E-value=2e-09 Score=119.95 Aligned_cols=196 Identities=14% Similarity=0.079 Sum_probs=147.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH-HhhcCCCHHHHHHHHHHHHHhcCC-ChhhHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA-GMLDFQLADSQISSLYALLNLGIG-NDLNKAA 211 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv-~lL~s~~~~~~~~a~~aL~NLa~~-~~~nk~~ 211 (519)
+.++++.|++.+...|..|+.+|.+|+. ++..+..+...|+|.+++ .+|..++.+++..|+++|.||+.. ..+....
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 7789999999999999999999999995 678999999999998865 578889999999999999999974 2566888
Q ss_pred HHhcCcHHHHHHhhcCCC-------C----CC-------HHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcC
Q 010064 212 IVKAGAVHKMLKLIESPV-------A----PN-------PSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNS 272 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~-------~----~~-------~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~ 272 (519)
++..|++++|..+++... . .. ..+.+.++.+|++|+... +....+...+.++.|+..|...
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 999999999999875320 0 00 123345677888887543 3455677889999999988542
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHH---HHHHcC-CHHHHHHHHHHHHHhc
Q 010064 273 DKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRY---LLEMLG-DMELSERILSILSNLV 331 (519)
Q Consensus 273 ~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~---Lv~lL~-~~~v~~~Al~~L~nLs 331 (519)
.....+++..|+.+|++|+.++. ....+.+.+.... |+.+.. +...+..++++|.|+.
T Consensus 195 -~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 -DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp -CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 12467899999999999998775 5556666554332 222222 2235667889999974
No 52
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.88 E-value=4e-08 Score=105.84 Aligned_cols=259 Identities=12% Similarity=0.064 Sum_probs=177.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
++.+.++.++++...|..|+..+..++..-... ....+++.+..+++++++.++..++.+|..++...... ..
T Consensus 128 ~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~ 200 (588)
T 1b3u_A 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NV 200 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hH
Confidence 444444556667788888888888887543221 12235788888888999999999999999998643321 22
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~ 293 (519)
...++|.|..++.++ +..++..++.+|..++..-+. .......+|.+..++.. .+..++..++.+|..++.
T Consensus 201 ~~~l~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d----~~~~vR~~a~~~l~~l~~ 271 (588)
T 1b3u_A 201 KSEIIPMFSNLASDE---QDSVRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAED----KSWRVRYMVADKFTELQK 271 (588)
T ss_dssp HHTHHHHHHHHHTCS---CHHHHTTHHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTC----SSHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHH
Confidence 456899999999888 889999988888777643221 11234578888888876 689999999999999975
Q ss_pred CCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCC--cccHH-HHhhcCCcchhhhhhccCCCCHHHHHHHHH
Q 010064 294 FPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVST--PEGRK-AISRVPDAFPILVDVLNWTDSPGCQEKASY 368 (519)
Q Consensus 294 ~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~--~e~r~-~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~ 368 (519)
.... .......++.++.++.|+ +++..|+.+|..++.. ++.+. ... ...++.+..++. +.++.++..+++
T Consensus 272 ~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~l~p~l~~~l~-d~~~~vR~~a~~ 346 (588)
T 1b3u_A 272 AVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM--SQILPCIKELVS-DANQHVKSALAS 346 (588)
T ss_dssp HHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH--HTHHHHHHHHHT-CSCHHHHHHHHT
T ss_pred HhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHH--HHHHHHHHHHhc-CCCHHHHHHHHH
Confidence 3211 123346788899999654 5889999999988862 22221 222 247788888888 678899999988
Q ss_pred HHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 369 VLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 369 ~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
+|..++..-.. ......++|.|+.++.+.++.+|..|..+|..+.
T Consensus 347 ~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 347 VIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391 (588)
T ss_dssp TGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 88887642111 1112335666666666666666666665555444
No 53
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.84 E-value=9.6e-08 Score=102.85 Aligned_cols=261 Identities=15% Similarity=0.101 Sum_probs=189.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
++.|...+.+++..+|..|+..|.+++...+.. .+ ..-+++.+..+..+++...+..++.+|..++...... .
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~~-~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~ 161 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPS--DL-EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----V 161 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HH-HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----H
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--HH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----H
Confidence 556666667788899999999999998664321 11 2234666667777888999999999999988754322 1
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~ 293 (519)
...++|.|..+++++ ++.++..++.+|..+...-... ......+|.|..++.. .+..++..|+.+|..++.
T Consensus 162 ~~~l~~~l~~l~~d~---~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d----~~~~vr~~a~~~l~~l~~ 232 (588)
T 1b3u_A 162 KAELRQYFRNLCSDD---TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASD----EQDSVRLLAVEACVNIAQ 232 (588)
T ss_dssp HHHHHHHHHHHHTCS---CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTC----SCHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHH
Confidence 234788888888887 8999999999998887543221 2235678888888877 688999999999998875
Q ss_pred CCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064 294 FPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM 371 (519)
Q Consensus 294 ~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~ 371 (519)
.... .......++.+..++.|+ .++..++.+|..++..... ..+ . ...++.++.++. ..++.++..|+++|.
T Consensus 233 ~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~-~~l~~~l~~~l~-d~~~~vr~~a~~~l~ 306 (588)
T 1b3u_A 233 LLPQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EIT-K-TDLVPAFQNLMK-DCEAEVRAAASHKVK 306 (588)
T ss_dssp HSCH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHH-H-HTHHHHHHHHHT-CSSHHHHHHHHHHHH
T ss_pred hCCH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccc-h-hHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4321 112234677777888654 4889999999999862111 112 2 347889999998 678999999999999
Q ss_pred HHhcCCh-hhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 372 VMAHKSY-GDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 372 nL~~~~~-~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
.++..-. +.+....-..++|.+..++.+.++.+|..+.++|..+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 307 EFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred HHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9987522 22222344567899999999999999999888777665
No 54
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.80 E-value=9.5e-09 Score=114.45 Aligned_cols=192 Identities=14% Similarity=0.120 Sum_probs=149.5
Q ss_pred cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHH-HhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064 215 AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVK-TLKNSDKKVSPQAKQDALRALYNLSI 293 (519)
Q Consensus 215 aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~-lL~~~~~~~~~~~~~~A~~aL~nLs~ 293 (519)
..++| +++.|+++ ++..+..|+++|.+|+.+++.+..+...++|..++. +|.. .+.+++..|+++|.||+.
T Consensus 34 ~~i~P-ll~~L~S~---~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D----~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 34 DKILP-VLKDLKSP---DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD----NNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp HTTHH-HHHHHSSS---CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC----SCHHHHHHHHHHHHHHHH
T ss_pred hhHHH-HHHHcCCC---CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHHh
Confidence 34444 66778988 889999999999999988888888888888887665 5665 699999999999999996
Q ss_pred C--CccHHHHHhcCcHHHHHHHcCC-----------------------HHHHHHHHHHHHHhcC-CcccHHHHhhcCCcc
Q 010064 294 F--PSNISFILETDLIRYLLEMLGD-----------------------MELSERILSILSNLVS-TPEGRKAISRVPDAF 347 (519)
Q Consensus 294 ~--~~n~~~l~~~g~v~~Lv~lL~~-----------------------~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i 347 (519)
. .+.+..++..|++++|..+|.. .++.+.++.+|++|+. +.+....+.. .+.+
T Consensus 106 ~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l 184 (684)
T 4gmo_A 106 EEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTI 184 (684)
T ss_dssp HSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHH
T ss_pred hcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccH
Confidence 5 4578889999999999988721 1256688999999997 5666667777 6899
Q ss_pred hhhhhhccCC--CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCc---HHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 348 PILVDVLNWT--DSPGCQEKASYVLMVMAHKSYGDRQAMIEAGI---ASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 348 ~~Lv~lL~~s--~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~---i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
+.|+..|... ....++..|+.+|++|+.++....+.+.+.+. +..|+.+... +...+.-++.+|.++.
T Consensus 185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 9999988422 24679999999999999998888888887664 3344443333 3444667788888875
No 55
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.77 E-value=2.6e-07 Score=100.98 Aligned_cols=256 Identities=16% Similarity=0.116 Sum_probs=187.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
+..+++.+.+.+...|..+...+..++..+++... -++..|.+-|.++++.++..|+.+|+++.. ++.-.
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~--- 120 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNPLIRALAVRTMGCIRV--DKITE--- 120 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHH---
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHH---
Confidence 66788888999999999999999888876554432 257888889999999999999999999874 33222
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~ 293 (519)
.+++.+.+++.++ ++.++..|+.++..+....+ ..+.+.+.++.|..+|.+ .++.++..|+.+|..++.
T Consensus 121 --~l~~~l~~~L~d~---~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d----~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 121 --YLCEPLRKCLKDE---DPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIAD----SNPMVVANAVAALSEISE 189 (591)
T ss_dssp --HHHHHHHHHSSCS---CHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTSC----SCHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHcCCC---ChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhCC----CChhHHHHHHHHHHHHHh
Confidence 2468899999988 89999999999998875422 223335778999999987 799999999999999987
Q ss_pred CCc-cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064 294 FPS-NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL 370 (519)
Q Consensus 294 ~~~-n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L 370 (519)
... ....-+..+.++.|+..+. ++-.+...+.+|.+++..++ ... ...++.+..+++ +.++.++..|++++
T Consensus 190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~~~---~~~l~~l~~~l~-~~~~~V~~ea~~~i 263 (591)
T 2vgl_B 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD--REA---QSICERVTPRLS-HANSAVVLSAVKVL 263 (591)
T ss_dssp SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--HHH---HHHHHHHTTCSC-SSTTHHHHHHHHHH
T ss_pred hCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--HHH---HHHHHHHHHHHc-CCChHHHHHHHHHH
Confidence 653 2111112244666777663 34467778888888775321 111 236677888888 56889999999999
Q ss_pred HHHhcC---ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 371 MVMAHK---SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 371 ~nL~~~---~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
..+... +++..+.+ -..+.+.|+.++. +++.+|..|...|..+...
T Consensus 264 ~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 264 MKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 998742 23333332 2345678887764 8899999999999999854
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.61 E-value=1.7e-06 Score=97.85 Aligned_cols=273 Identities=12% Similarity=0.072 Sum_probs=189.3
Q ss_pred chhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccC-hhhHHHHHh--cCCHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 010064 129 EALEELKIVVKDLQSE--SEEQRREAASKVRSLAKEN-SETRVTLAM--LGAIPPLAGMLDFQ--LADSQISSLYALLNL 201 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~-~~~r~~l~~--~G~i~~Lv~lL~s~--~~~~~~~a~~aL~NL 201 (519)
.+.+.++.+++.+.++ +...+..|+.++..++..- ++ .+.. ..+++.++..+..+ +..++..++.+|.++
T Consensus 125 ~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~ 201 (876)
T 1qgr_A 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (876)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 4566789999999888 8889999999999988642 11 1111 23567777888776 789999999999998
Q ss_pred cCCChhhH-HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--ChhhhhhCCChHHHHHHhhcCCCCCCH
Q 010064 202 GIGNDLNK-AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPIIGSSGAVPFLVKTLKNSDKKVSP 278 (519)
Q Consensus 202 a~~~~~nk-~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~k~~I~~~gai~~LV~lL~~~~~~~~~ 278 (519)
+...+.+- .......+++.+...+.+. +..++..++.+|..+..... ..+.+ ....++.++..+.. .+.
T Consensus 202 ~~~~~~~~~~~~~~~~il~~l~~~~~~~---~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~----~~~ 273 (876)
T 1qgr_A 202 LEFTKANFDKESERHFIMQVVCEATQCP---DTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKS----DID 273 (876)
T ss_dssp GGGCHHHHTSHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTC----SSH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcC----Cch
Confidence 85323221 1111123678888888776 78999999888887764321 12222 23678888887766 688
Q ss_pred HHHHHHHHHHHHhcCCCc---------------------cHHHHHhcCcHHHHHHHcC-------CH--HHHHHHHHHHH
Q 010064 279 QAKQDALRALYNLSIFPS---------------------NISFILETDLIRYLLEMLG-------DM--ELSERILSILS 328 (519)
Q Consensus 279 ~~~~~A~~aL~nLs~~~~---------------------n~~~l~~~g~v~~Lv~lL~-------~~--~v~~~Al~~L~ 328 (519)
.++..|+.++.+++.... ....-.-...++.++..|. +. .++..|..+|.
T Consensus 274 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~ 353 (876)
T 1qgr_A 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM 353 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHH
Confidence 999999999988875320 0000001245667777773 11 27788888888
Q ss_pred HhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcHHHHHHHhhcCCHHHHHH
Q 010064 329 NLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY-GDRQAMIEAGIASALLELTLLGSTLAQKR 407 (519)
Q Consensus 329 nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~ 407 (519)
.|+..-. ..+.. .+++.+...+. +.++.+++.|++++..++.+.. +..... -..++|.|+..+.+.++.++..
T Consensus 354 ~l~~~~~--~~~~~--~~l~~l~~~l~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~ 427 (876)
T 1qgr_A 354 LLATCCE--DDIVP--HVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDT 427 (876)
T ss_dssp HHHHHHG--GGGHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHCc--HhhHH--HHHHHHHHHcc-CCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHH
Confidence 8876221 12333 36677777887 5789999999999999997643 322222 2458999999999999999999
Q ss_pred HHHHHHHhhhc
Q 010064 408 ASRILECLRVD 418 (519)
Q Consensus 408 A~~~L~~l~~~ 418 (519)
|.++|..+...
T Consensus 428 a~~~l~~~~~~ 438 (876)
T 1qgr_A 428 AAWTVGRICEL 438 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999965
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.60 E-value=3e-06 Score=93.09 Aligned_cols=278 Identities=14% Similarity=0.077 Sum_probs=188.2
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG 181 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~ 181 (519)
+..+..++.+|.++...+ . . ...++.+.+.|.+.++.+|..|+.++.++.+.+++.- .++++.+..
T Consensus 121 ~~vr~lAL~~L~~i~~~~-~---~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~ 186 (618)
T 1w63_A 121 QFVQGLALCTLGCMGSSE-M---C-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKN 186 (618)
T ss_dssp SHHHHHHHHHHHHHCCHH-H---H-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTT
T ss_pred HhHHHHHHHHHHhcCCHH-H---H-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHH
Confidence 456677777777776322 1 1 1227788888999999999999999999998776533 257888889
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCC------------CCCCHHHHHHHHHHHHHhccC
Q 010064 182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESP------------VAPNPSVSEAIVANFLGLSAL 249 (519)
Q Consensus 182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~------------~~~~~~~~~~a~~aL~~LS~~ 249 (519)
+|...++.++..|+.+|..++..+++....+ ...+|.|+.+|.+- ..+++-.+..++.+|..+...
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred HhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 9999999999999999999998644322222 25788888876530 001577777788888777754
Q ss_pred CCChhhhhhCCChHHHHHHhhcCC--CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHH
Q 010064 250 DSNKPIIGSSGAVPFLVKTLKNSD--KKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--DMELSERILS 325 (519)
Q Consensus 250 ~~~k~~I~~~gai~~LV~lL~~~~--~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~ 325 (519)
++. .....++.|..++.... ...+..+...|+.++.++...+. +. ..++..|..+|. +++++..|+.
T Consensus 265 ~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~ 335 (618)
T 1w63_A 265 DDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESG----LR-VLAINILGRFLLNNDKNIRYVALT 335 (618)
T ss_dssp CHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHTCSSTTTHHHHHH
T ss_pred CHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHhCCCCchHHHHHH
Confidence 321 12345667777765310 11345788889999988754321 11 246677888775 4458888888
Q ss_pred HHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHH
Q 010064 326 ILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQ 405 (519)
Q Consensus 326 ~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~ 405 (519)
+|..++.. ...++. .....++..+. ++++.++..|..+|..|+... +.+. +++.|+..+.+.++..+
T Consensus 336 ~L~~i~~~---~p~~~~--~~~~~i~~~l~-d~d~~Ir~~alelL~~l~~~~--nv~~-----iv~eL~~~l~~~d~e~r 402 (618)
T 1w63_A 336 SLLKTVQT---DHNAVQ--RHRSTIVDCLK-DLDVSIKRRAMELSFALVNGN--NIRG-----MMKELLYFLDSCEPEFK 402 (618)
T ss_dssp HHHHHHHH---HHHHHG--GGHHHHHHGGG-SSCHHHHHHHHHHHHHHCCSS--STHH-----HHHHHHHHHHHCCHHHH
T ss_pred HHHHHHhh---CHHHHH--HHHHHHHHHcc-CCChhHHHHHHHHHHHHcccc--cHHH-----HHHHHHHHHHhCCHHHH
Confidence 88888752 122233 25567777777 567888888999988888642 2222 34666777777777788
Q ss_pred HHHHHHHHHhhh
Q 010064 406 KRASRILECLRV 417 (519)
Q Consensus 406 ~~A~~~L~~l~~ 417 (519)
..+..+|..++.
T Consensus 403 ~~~v~~I~~la~ 414 (618)
T 1w63_A 403 ADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777775
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.53 E-value=2.5e-06 Score=93.81 Aligned_cols=252 Identities=14% Similarity=0.053 Sum_probs=184.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
+..+.+.|.++|+..+..|+++|.++.. ++.- ..+++.+..+|.+.++.++..|+.++.++...+++..
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v---- 177 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM---- 177 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----
Confidence 6677788889999999999999999883 2222 2357889999999999999999999999997655422
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hhhhhhCCChHHHHHHhhcC----C-------CCCCHHHH
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KPIIGSSGAVPFLVKTLKNS----D-------KKVSPQAK 281 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~~I~~~gai~~LV~lL~~~----~-------~~~~~~~~ 281 (519)
+ +.++.+..++.+. ++.++..|+.+|..+....+. ...+ ...+|.|+.+|... . ...++-.+
T Consensus 178 ~-~~~~~l~~lL~D~---d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 178 E-MFLPATKNLLNEK---NHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp G-GGGGGTTTSTTCC---CHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred H-HHHHHHHHHhCCC---CHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 2 6788888899887 899999999999998754221 1111 36788888877641 0 01478899
Q ss_pred HHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC------CH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhh
Q 010064 282 QDALRALYNLSIFPSNISFILETDLIRYLLEMLG------DM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDV 353 (519)
Q Consensus 282 ~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~------~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~l 353 (519)
...+.+|..++..+... ....++.|..++. +. .+...|..++.++...+..+ . .++..|..+
T Consensus 252 ~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~----~--~a~~~L~~~ 321 (618)
T 1w63_A 252 VRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR----V--LAINILGRF 321 (618)
T ss_dssp HHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH----H--HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH----H--HHHHHHHHH
Confidence 99999999998764321 1234445555541 22 37788999999886543222 2 356688888
Q ss_pred ccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 354 LNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 354 L~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
|. +.++.++..|+.+|..++...+. ++ ....+.++..+.+.++.+|.+|..+|..+...
T Consensus 322 L~-~~d~~vr~~aL~~L~~i~~~~p~----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 322 LL-NNDKNIRYVALTSLLKTVQTDHN----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp HT-CSSTTTHHHHHHHHHHHHHHHHH----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred Hh-CCCCchHHHHHHHHHHHHhhCHH----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence 88 56889999999999999875332 22 22566788888899999999999999888753
No 59
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.52 E-value=1.1e-06 Score=99.46 Aligned_cols=278 Identities=12% Similarity=0.092 Sum_probs=183.2
Q ss_pred hHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhh-HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh
Q 010064 131 LEELKIVVKDLQSE--SEEQRREAASKVRSLAKENSET-RVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL 207 (519)
Q Consensus 131 ~~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~~~-r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~ 207 (519)
...++.+++.+..+ +..++..|+.++..+...-... ........+++.+...+..++.+++..++.+|..++...+.
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34467777777766 6888999999999877432111 00011112577777888888899999999999999975444
Q ss_pred hHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-------------------CChhhhh--hCCChHHHH
Q 010064 208 NKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-------------------SNKPIIG--SSGAVPFLV 266 (519)
Q Consensus 208 nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-------------------~~k~~I~--~~gai~~LV 266 (519)
.-...+...+++.++..+.+. +..++..++..+..++... .....+. -...+|.++
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll 327 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSD---IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHH
Confidence 323334447899999988877 7888888877666654321 0111110 134567777
Q ss_pred HHhhcCC---CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCc--ccHHH
Q 010064 267 KTLKNSD---KKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTP--EGRKA 339 (519)
Q Consensus 267 ~lL~~~~---~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~--e~r~~ 339 (519)
..+...+ .+.+...+..|+.+|..|+..... .++ ..+++.+...+.+ ..+++.|+.+|++++... +....
T Consensus 328 ~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~ 404 (876)
T 1qgr_A 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (876)
T ss_dssp HHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred HHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 7775421 013456888899999888753221 111 1345556666654 358999999999999742 22222
Q ss_pred HhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH-HHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 340 ISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR-QAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 340 i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~-~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
... ..++.|+..+. +.++.++..|+++|.+++....... ..-.-..+++.|+..+.+. +.++..|.++|..+...
T Consensus 405 ~~~--~~l~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 405 LVI--QAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHH--HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 333 48888999998 6789999999999999997532210 0001134678888888775 89999999999999854
No 60
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.48 E-value=1.3e-06 Score=98.65 Aligned_cols=270 Identities=13% Similarity=0.180 Sum_probs=176.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCh--hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh--H
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENS--ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN--K 209 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~--~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n--k 209 (519)
++.+.+.|.+.++..|..|+.++..++.... .....+ ..+++.|+..+.++++.++..++++|.+++...... .
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 4555566678889999999999999996532 222222 247888999999999999999999999998531110 0
Q ss_pred HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--Chhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHH
Q 010064 210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDAL 285 (519)
Q Consensus 210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~ 285 (519)
... -..++|.|+..+.++ +.++..++++|.++...-. ....+.. ...++.|+.++... ..+..++..++
T Consensus 449 ~~~-~~~~l~~l~~~l~~~----~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~--d~~~~vr~~a~ 521 (861)
T 2bpt_A 449 QQH-LPGVVQACLIGLQDH----PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI--DNEFNARASAF 521 (861)
T ss_dssp TTT-HHHHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS--CCGGGHHHHHH
T ss_pred HHH-HHHHHHHHHHHhccC----hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc--CcchHHHHHHH
Confidence 011 123678888888663 7889999888887764311 0111111 34577888888752 12367899999
Q ss_pred HHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC-----------------HHHHHHHHHHHHHhcC-CcccHHHHhhcCCc
Q 010064 286 RALYNLSIFPS-NISFILETDLIRYLLEMLGD-----------------MELSERILSILSNLVS-TPEGRKAISRVPDA 346 (519)
Q Consensus 286 ~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~-----------------~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~ 346 (519)
.+|..+..... .....+. ..++.++..|.+ .+++..++.+|.+++. .+..-..... ..
T Consensus 522 ~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l 598 (861)
T 2bpt_A 522 SALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD--ML 598 (861)
T ss_dssp HHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH--HH
T ss_pred HHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--HH
Confidence 99999976433 2222222 355666655531 1266789999999886 3222122222 47
Q ss_pred chhhhhhccCCCCH-HHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 347 FPILVDVLNWTDSP-GCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 347 i~~Lv~lL~~s~~~-~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
++.++.++. ..++ .+++.++.++..++......-...+ ..++|.|+..+.+.++.++..|..++..+..
T Consensus 599 ~~~l~~~l~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 599 MGLFFRLLE-KKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHHHHH-STTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-cCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 777888887 4445 7899999999998864222211111 2378899998887888888888888776653
No 61
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.45 E-value=7.7e-06 Score=92.24 Aligned_cols=273 Identities=12% Similarity=0.058 Sum_probs=185.6
Q ss_pred chhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCh-hh---HHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 010064 129 EALEELKIVVKDLQSE-SEEQRREAASKVRSLAKENS-ET---RVTLAMLGAIPPLAGMLDFQ--LADSQISSLYALLNL 201 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~-~~---r~~l~~~G~i~~Lv~lL~s~--~~~~~~~a~~aL~NL 201 (519)
.|.+.++.|++.+.++ +...+..|+.++..++..-. .. ...+ ..+++.++..+.++ ++.++..++.+|.++
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~ 208 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS--NNILIAIVQGAQSTETSKAVRLAALNALADS 208 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 4566789999999888 88999999999999886421 11 1111 22566777777776 899999999999997
Q ss_pred cCCChhhH-HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--ChhhhhhCCChHHHHHHhhcCCCCCCH
Q 010064 202 GIGNDLNK-AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPIIGSSGAVPFLVKTLKNSDKKVSP 278 (519)
Q Consensus 202 a~~~~~nk-~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~k~~I~~~gai~~LV~lL~~~~~~~~~ 278 (519)
...-..+- .......+++.|...+.++ +..++..++.+|..+..... ....+ ....++.+...+.. .+.
T Consensus 209 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~----~~~ 280 (861)
T 2bpt_A 209 LIFIKNNMEREGERNYLMQVVCEATQAE---DIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKS----PND 280 (861)
T ss_dssp GGGCHHHHTSHHHHHHHHHHHHHHHTCS---CHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTC----SSH
T ss_pred HHHHHHHccChhHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC----CcH
Confidence 53212210 0011123677777888777 78999999888877764321 12211 11556666666666 688
Q ss_pred HHHHHHHHHHHHhcCCCcc------------------HHHHHhcCcHHHHHHHcCC---------HHHHHHHHHHHHHhc
Q 010064 279 QAKQDALRALYNLSIFPSN------------------ISFILETDLIRYLLEMLGD---------MELSERILSILSNLV 331 (519)
Q Consensus 279 ~~~~~A~~aL~nLs~~~~n------------------~~~l~~~g~v~~Lv~lL~~---------~~v~~~Al~~L~nLs 331 (519)
.++..|+.++..++..... .... -...++.|+..|.+ ..++..+..+|..|+
T Consensus 281 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~ 359 (861)
T 2bpt_A 281 KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA 359 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHH
Confidence 9999999999988754211 1111 14567777777742 247788999998888
Q ss_pred CCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHH
Q 010064 332 STPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY-GDRQAMIEAGIASALLELTLLGSTLAQKRASR 410 (519)
Q Consensus 332 ~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~ 410 (519)
..-. ..+.. ..++.+.+.+. +.++..++.|++++..++.+.. ......+ ..++|.|+..+.+.++.++..+.+
T Consensus 360 ~~~~--~~~~~--~l~~~l~~~l~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~ 433 (861)
T 2bpt_A 360 QNCG--NHILE--PVLEFVEQNIT-ADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAW 433 (861)
T ss_dssp HHHG--GGGHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHcc--HhHHH--HHHHHHHHHcC-CCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHH
Confidence 6221 22222 36667777777 5689999999999999997642 2222222 257899999999999999999999
Q ss_pred HHHHhhhc
Q 010064 411 ILECLRVD 418 (519)
Q Consensus 411 ~L~~l~~~ 418 (519)
+|..+...
T Consensus 434 ~l~~l~~~ 441 (861)
T 2bpt_A 434 CIGRIADS 441 (861)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988854
No 62
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.35 E-value=1.7e-06 Score=90.11 Aligned_cols=235 Identities=12% Similarity=0.113 Sum_probs=153.5
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhH-HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH
Q 010064 133 ELKIVVKDLQSE--SEEQRREAASKVRSLAKENSETR-VTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK 209 (519)
Q Consensus 133 ~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~~~r-~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk 209 (519)
.++.++..|... +..+|..|+.++..+...-...- ......-+++.|...+.++++.++..++.+|..++...+..-
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 252 (462)
T 1ibr_B 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM 252 (462)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888877 78899999999998653211100 000011146667777788899999999999999986433211
Q ss_pred HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-------------------CChhhhh--hCCChHHHHHH
Q 010064 210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-------------------SNKPIIG--SSGAVPFLVKT 268 (519)
Q Consensus 210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-------------------~~k~~I~--~~gai~~LV~l 268 (519)
...+..++++.++..+++. +..++..++..+..++... .....+. -...+|.|+..
T Consensus 253 ~~~~~~~l~~~~~~~~~~~---~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 253 ETYMGPALFAITIEAMKSD---IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp TTTTTTTHHHHHHHHHHCS---SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 1112226788888888887 7889888877766665321 1111110 13356677777
Q ss_pred hhcCC---CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcc--cHHHHh
Q 010064 269 LKNSD---KKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPE--GRKAIS 341 (519)
Q Consensus 269 L~~~~---~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e--~r~~i~ 341 (519)
+...+ .+.+...+..|+.+|..|+..-.. .++ ..+++.+...|.++ .+++.|+.+|+.++.... .-....
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l 406 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 75421 123456888999999988754321 111 23556666777654 488999999999997322 111122
Q ss_pred hcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 342 RVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 342 ~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
...++.|+..|. +.++.++..|+|+|.+++..
T Consensus 407 --~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 407 --IQAMPTLIELMK-DPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp --TTHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh
Confidence 458899999998 57899999999999999964
No 63
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.22 E-value=0.00011 Score=69.52 Aligned_cols=185 Identities=16% Similarity=0.202 Sum_probs=143.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHH
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENS-ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKA 210 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~-~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~ 210 (519)
+.+..|+.+|+..|...+..|+.+|.++.+.-+ ..+... -..+++.++.++++.|..+...|+++|.-|-.+.+-...
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~-~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMV-LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 348889999999999999999999999887732 333322 235789999999999999999999999999987666666
Q ss_pred HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064 211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN 290 (519)
Q Consensus 211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~n 290 (519)
.+.. ++.+|..+++++ +.-+++.++-.+-.+......+ +.+.+|..++.+ .+.+++..++.+|.|
T Consensus 112 ~y~K--l~~aL~dlik~~---~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~S----kd~~vK~agl~~L~e 176 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESP---DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVS----PDLYTKVAGFCLFLN 176 (265)
T ss_dssp HHHH--HHHHHHHHTTSC---CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTC----SSHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHhcCC---CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhC----CChhHHHHHHHHHHH
Confidence 6655 468888999988 8999999999998885444433 357889999976 799999999999999
Q ss_pred hcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCc
Q 010064 291 LSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTP 334 (519)
Q Consensus 291 Ls~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~ 334 (519)
++...+....+ ..++.-+-.+|. |+.+.+.|+.+|..+...+
T Consensus 177 ia~~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 177 MLNSSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HGGGCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred hhcccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 98755321111 223333444453 6679999999999999854
No 64
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.22 E-value=5e-05 Score=79.41 Aligned_cols=234 Identities=12% Similarity=0.042 Sum_probs=161.4
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcC--cHHHHHHhhcC----CC----------CCCHHHHHHHH
Q 010064 178 PLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAG--AVHKMLKLIES----PV----------APNPSVSEAIV 240 (519)
Q Consensus 178 ~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG--~v~~Lv~lL~s----~~----------~~~~~~~~~a~ 240 (519)
.++..|.. .+...+..++.+|..|... ++.|..+.+.+ .+|.++.++.. .. .....++-.++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 35555655 3456677899999999994 99999998764 47777664431 10 00244566778
Q ss_pred HHHHHhccCCCChhhhhhCCCh--HHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-----cHH-HHHhcCcHHHHHH
Q 010064 241 ANFLGLSALDSNKPIIGSSGAV--PFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-----NIS-FILETDLIRYLLE 312 (519)
Q Consensus 241 ~aL~~LS~~~~~k~~I~~~gai--~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-----n~~-~l~~~g~v~~Lv~ 312 (519)
-++|-||..++....+...+.+ +.|+.+++.. ...++.+-++.+|.||..... ... .++..++ .+++.
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s---~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~ 325 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKIT---IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQ 325 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHC---CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHH
Confidence 8999999988766666666643 6778888874 678999999999999987651 223 2333455 44555
Q ss_pred Hc-----CCHHHHH-------HHHHHHHHhcCCcccHHHHhh-------------------------cCCcchhhhhhcc
Q 010064 313 ML-----GDMELSE-------RILSILSNLVSTPEGRKAISR-------------------------VPDAFPILVDVLN 355 (519)
Q Consensus 313 lL-----~~~~v~~-------~Al~~L~nLs~~~e~r~~i~~-------------------------~~g~i~~Lv~lL~ 355 (519)
.| .|+++.+ .--..+..|++.++.+.++.. .-..+..|+++|.
T Consensus 326 ~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~ 405 (480)
T 1ho8_A 326 SLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQ 405 (480)
T ss_dssp HHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHH
T ss_pred HHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 55 4555332 222223344434444443321 1234678888887
Q ss_pred C---------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 356 W---------TDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 356 ~---------s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
. +.++.+..-||.=++.++...+..|..+-+.|+=..+++|+.+.++.++..|..+++.+-
T Consensus 406 ~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 406 AKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred hhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3 235777778888899999987888888889999999999999999999999999998775
No 65
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.20 E-value=1.5e-06 Score=102.71 Aligned_cols=271 Identities=11% Similarity=0.057 Sum_probs=182.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
.+..++..+.+.+.+.|..|...|.+....+...-..-....+++.|+..|.+.++.+|..|+.+|.+++..... ..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~ 83 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQ 83 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HH
Confidence 377888889999999999999988886543210000000113578899999999999999999999999975443 11
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh------hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK------PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR 286 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k------~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~ 286 (519)
+ ..+++.|+..+.++ +..++..++.+|..++..-... ..-.....+|.|+..+... .+...+..|+.
T Consensus 84 ~-~~i~~~Ll~~l~d~---~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~---~~~~~~~~al~ 156 (1230)
T 1u6g_C 84 V-ETIVDTLCTNMLSD---KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ---EDVSVQLEALD 156 (1230)
T ss_dssp H-HHHHHHHHHHTTCS---SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC---SCHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC---CchHHHHHHHH
Confidence 1 23678888888877 6788888877776665321111 0111345789999988732 57899999999
Q ss_pred HHHHhcCC--CccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHH
Q 010064 287 ALYNLSIF--PSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGC 362 (519)
Q Consensus 287 aL~nLs~~--~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~ 362 (519)
+|..++.. ...... -...++.|+..|.+ +.++..|+.+|..++..... .+. ...++.|++.|....++..
T Consensus 157 ~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~ 230 (1230)
T 1u6g_C 157 IMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMST 230 (1230)
T ss_dssp HHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCS
T ss_pred HHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhH
Confidence 99998742 111111 12355666666654 45999999999999874321 222 3467788887764333456
Q ss_pred HHHHHHHHHHHhcCChhhHHHHH--HcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCc
Q 010064 363 QEKASYVLMVMAHKSYGDRQAMI--EAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQ 422 (519)
Q Consensus 363 qe~A~~~L~nL~~~~~~~~~~i~--~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~ 422 (519)
+..++.++..++...+. .+. -..++|.++..+.+.++.++..+..++..+....+..
T Consensus 231 r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 231 TRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp CTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH
Confidence 66788888888754222 111 1468999999999989999999999999888654433
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.12 E-value=0.00032 Score=79.36 Aligned_cols=233 Identities=12% Similarity=0.071 Sum_probs=160.0
Q ss_pred HHHHHHHhcCCC--------HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 010064 134 LKIVVKDLQSES--------EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGN 205 (519)
Q Consensus 134 l~~Lv~~L~s~~--------~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~ 205 (519)
+..|...|.+.+ ...+..|+..|....-+. ... .+++.|..+|..++..+...|+.+|+-+-.++
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS-~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGT 503 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS-ANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGT 503 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC-CCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC-CCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc
Confidence 445555565443 456777777777754333 111 14677888888888777888989988775553
Q ss_pred hhhHHHHHhcCcHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064 206 DLNKAAIVKAGAVHKMLKLIE-SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDA 284 (519)
Q Consensus 206 ~~nk~~iv~aG~v~~Lv~lL~-s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A 284 (519)
..+. ++..|+..+. .. +..++..++..|..+.. .+...++.|+.+|... .++.++..+
T Consensus 504 gn~~-------ai~~LL~~~~e~~---~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~---~dp~vRyga 562 (963)
T 4ady_A 504 GKPE-------AIHDMFTYSQETQ---HGNITRGLAVGLALINY--------GRQELADDLITKMLAS---DESLLRYGG 562 (963)
T ss_dssp CCHH-------HHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHC---SCHHHHHHH
T ss_pred CCHH-------HHHHHHHHHhccC---cHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhC---CCHHHHHHH
Confidence 3222 3455555443 33 67788777666665543 2445788999998874 788899988
Q ss_pred HHHHHHhcCCCccHHHHHhcCcHHHHHHHc---CCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHH
Q 010064 285 LRALYNLSIFPSNISFILETDLIRYLLEML---GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPG 361 (519)
Q Consensus 285 ~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL---~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~ 361 (519)
+.++.--..++.|.. +|+.|+..+ .+.+++..|+..|+.+....+ ..++.++++|..+.++.
T Consensus 563 a~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~ 627 (963)
T 4ady_A 563 AFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAH 627 (963)
T ss_dssp HHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHH
T ss_pred HHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHH
Confidence 888876666665543 455666665 245688899999998765432 24567777666578999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 362 CQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 362 ~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
++..|+++|+.++.+++. ..++..|..++.+.+..++..|..+|..+-
T Consensus 628 VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 628 VRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 999999999999987542 125677888888888888888888887665
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.08 E-value=0.00053 Score=75.23 Aligned_cols=281 Identities=13% Similarity=0.104 Sum_probs=175.8
Q ss_pred hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHH
Q 010064 102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDL--QSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPL 179 (519)
Q Consensus 102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L--~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~L 179 (519)
+..+.-+++++.++...+ ..+. .++.+.+.| .+.++.+|..|+.++.++.+.+++.-. ..++++.|
T Consensus 125 ~~ir~lALr~L~~i~~~e-~~~~--------l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l 192 (621)
T 2vgl_A 125 PTFMGLALHCIANVGSRE-MAEA--------FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRV 192 (621)
T ss_dssp HHHHHHHHHHHHHHCCHH-HHHH--------HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHH
T ss_pred HHHHHHHHHHhhccCCHH-HHHH--------HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHH
Confidence 456777778888876433 2222 266777888 788999999999999999977654322 24899999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHH----hhcCCCC----------CCHHHHHHHHHHHHH
Q 010064 180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLK----LIESPVA----------PNPSVSEAIVANFLG 245 (519)
Q Consensus 180 v~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~----lL~s~~~----------~~~~~~~~a~~aL~~ 245 (519)
..+|...++.++..|+.+|..++..++.. + ...+|.++. ++..+.- +++-.+..++..|..
T Consensus 193 ~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~ 267 (621)
T 2vgl_A 193 VHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC 267 (621)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred HHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence 99999999999999999999998754432 1 123454444 3322100 135666666666666
Q ss_pred hccCCC--ChhhhhhCCChHHHHHHhhcCC-----CCC--CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC-
Q 010064 246 LSALDS--NKPIIGSSGAVPFLVKTLKNSD-----KKV--SPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG- 315 (519)
Q Consensus 246 LS~~~~--~k~~I~~~gai~~LV~lL~~~~-----~~~--~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~- 315 (519)
+...++ .+..+. ..+..++..+.... .+. ...+...|+.++..+...++.. ..++..|..+|.
T Consensus 268 ~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~-----~~~~~~L~~~L~~ 340 (621)
T 2vgl_A 268 YPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLL-----VRACNQLGQFLQH 340 (621)
T ss_dssp SSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHSSC
T ss_pred hCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHHHHhcC
Confidence 654321 122111 12333332221100 001 2377888888888886332222 235677888884
Q ss_pred -CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHH
Q 010064 316 -DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALL 394 (519)
Q Consensus 316 -~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll 394 (519)
+++++.-++..|..++........ +. .....++..|..++++.++..+..+|..|+. +.+.+. ++..|.
T Consensus 341 ~~~niry~aL~~l~~l~~~~~~~~~-~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~ 410 (621)
T 2vgl_A 341 RETNLRYLALESMCTLASSEFSHEA-VK--THIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEML 410 (621)
T ss_dssp SCHHHHHHHHHHHHHHTTCTTTHHH-HH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccCcHHH-HH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHH
Confidence 567999999999999874322222 33 2566777777634578899999999999985 344333 344556
Q ss_pred HHhhcCCHHHHHHHHHHHHHhh
Q 010064 395 ELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 395 ~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
..+...+...+..+...+..++
T Consensus 411 ~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 411 SYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH
Confidence 6666666666666666666665
No 68
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.07 E-value=0.00036 Score=76.54 Aligned_cols=256 Identities=14% Similarity=0.089 Sum_probs=177.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML--DFQLADSQISSLYALLNLGIGNDLNKAA 211 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL--~s~~~~~~~~a~~aL~NLa~~~~~nk~~ 211 (519)
+..+.+.|.++|+..+..|+.+|.++.. ++.-. .+++++.++| .+.++-++..|+.++.++...+++ .
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~ 182 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---L 182 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---G
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---h
Confidence 5677778889999999999999999863 33333 3578889999 889999999999999999975443 2
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhh----cC-CC-C-------CCH
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLK----NS-DK-K-------VSP 278 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~----~~-~~-~-------~~~ 278 (519)
+...+.++.|.++|.+. ++.++..|+.+|..+..... ..+ ...+|.++..|. .. .+ . .++
T Consensus 183 ~~~~~~~~~l~~lL~d~---d~~V~~~a~~~l~~i~~~~~--~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~ 255 (621)
T 2vgl_A 183 VPMGDWTSRVVHLLNDQ---HLGVVTAATSLITTLAQKNP--EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP 255 (621)
T ss_dssp CCCCSCHHHHHHHTTCS---CHHHHHHHHHHHHHHHHHCH--HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESH
T ss_pred cCchhHHHHHHHHhCCC---CccHHHHHHHHHHHHHHhCh--HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCc
Confidence 22248899999999887 89999999999988875432 111 234555555443 21 00 0 167
Q ss_pred HHHHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHHc-C----------C--HHHHHHHHHHHHHhcCCcccHHHHhhc
Q 010064 279 QAKQDALRALYNLSIFPS--NISFILETDLIRYLLEML-G----------D--MELSERILSILSNLVSTPEGRKAISRV 343 (519)
Q Consensus 279 ~~~~~A~~aL~nLs~~~~--n~~~l~~~g~v~~Lv~lL-~----------~--~~v~~~Al~~L~nLs~~~e~r~~i~~~ 343 (519)
-.+...+..|..++..++ ....+.+ .+..++..+ . + ..+..+|..++..+...++...
T Consensus 256 w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~----- 328 (621)
T 2vgl_A 256 WLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV----- 328 (621)
T ss_dssp HHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----
T ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----
Confidence 899999999998886432 2332322 333333322 1 1 1477788888888875443332
Q ss_pred CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh-cCCHHHHHHHHHHHHHhhhc
Q 010064 344 PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTL-LGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 344 ~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~-~gs~~~~~~A~~~L~~l~~~ 418 (519)
.++..|..+|. +.++.++-.|...|..++...+. ...+ ....+.++..+. +.++.++.+|..+|..+..+
T Consensus 329 -~~~~~L~~~L~-~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 329 -RACNQLGQFLQ-HRETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp -HHHHHHHHHSS-CSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred -HHHHHHHHHhc-CCCcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 25567888887 57899999999999999976432 1222 235667777777 88899999999988887743
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.03 E-value=7.8e-05 Score=71.34 Aligned_cols=180 Identities=15% Similarity=0.123 Sum_probs=131.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhH-HHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 136 IVVKDLQSESEEQRREAASKVRSLAKENSETR-VTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 136 ~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r-~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
.+.+.+.+.++..|..|+..|..+....+... ..+ ..+++.|...|. ..+..++..|+.+|..|+..-...-...+
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 47778889999999999999999886522210 001 124677888884 88999999999999999964222111222
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~ 293 (519)
.-++|.|+..+.++ +..+++.+..+|..+...... ...++.|...+.. .++.++..++..|..+..
T Consensus 97 -~~ilp~ll~~l~d~---~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~----~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 97 -SACVPSLLEKFKEK---KPNVVTALREAIDAIYASTSL------EAQQESIVESLSN----KNPSVKSETALFIARALT 162 (242)
T ss_dssp -HHHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTC----SCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcC----CChHHHHHHHHHHHHHHH
Confidence 23799999999998 899999999999988764321 2246777788776 689999999999999644
Q ss_pred C--Cc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC
Q 010064 294 F--PS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS 332 (519)
Q Consensus 294 ~--~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~ 332 (519)
. ++ .....+ ...++.|+.+|.| .+++..|..+|+.|+.
T Consensus 163 ~~~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 163 RTQPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp TCCGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 3 22 112222 2678899999964 4699999999998875
No 70
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.99 E-value=6.8e-05 Score=88.54 Aligned_cols=222 Identities=15% Similarity=0.140 Sum_probs=153.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh-----
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN----- 208 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n----- 208 (519)
++.+++.|.+.+..+|..|+.+|..++..-.+ ..+ ..+++.|+..|.++++.++..++.+|..++......
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 77888989988999999999999999865433 111 225788888888888889999999999988542221
Q ss_pred -HHHHHhcCcHHHHHHhhcC-CCCCCHHHHHHHHHHHHHhccCC-C-ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064 209 -KAAIVKAGAVHKMLKLIES-PVAPNPSVSEAIVANFLGLSALD-S-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDA 284 (519)
Q Consensus 209 -k~~iv~aG~v~~Lv~lL~s-~~~~~~~~~~~a~~aL~~LS~~~-~-~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A 284 (519)
.... -..++|.|+..+.+ + +..++..++.+|..+.... + ..+. -...++.|+..+.. .+..++..|
T Consensus 126 ~~~~~-~~~llp~L~~~l~~~~---~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~----~~~~vR~~a 195 (1230)
T 1u6g_C 126 LAANV-CKKITGRLTSAIAKQE---DVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTS----PRLAVRKRT 195 (1230)
T ss_dssp THHHH-HHHHHHHHHHHHSCCS---CHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGC----SSHHHHHHH
T ss_pred hHHHH-HHHHHHHHHHHHcCCC---chHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcC----CcHHHHHHH
Confidence 1111 23478999999984 5 7899999988888876321 1 1111 13356666777766 578999999
Q ss_pred HHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC---HHHHHHHHHHHHHhcC-CcccHHHHh-hcCCcchhhhhhccCCCC
Q 010064 285 LRALYNLSIFPSNISFILETDLIRYLLEMLGD---MELSERILSILSNLVS-TPEGRKAIS-RVPDAFPILVDVLNWTDS 359 (519)
Q Consensus 285 ~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~---~~v~~~Al~~L~nLs~-~~e~r~~i~-~~~g~i~~Lv~lL~~s~~ 359 (519)
+.+|..++...... + -...++.|+..|.+ ..++..++.++..++. .+. .+. .....++.++..+. ..+
T Consensus 196 ~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~-d~~ 268 (1230)
T 1u6g_C 196 IIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCN-VDD 268 (1230)
T ss_dssp HHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHS-SCC
T ss_pred HHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhc-CCC
Confidence 99999998754321 1 12457778777732 2355567777777765 222 111 11357888888887 567
Q ss_pred HHHHHHHHHHHHHHhcC
Q 010064 360 PGCQEKASYVLMVMAHK 376 (519)
Q Consensus 360 ~~~qe~A~~~L~nL~~~ 376 (519)
+.+++.+..++..++..
T Consensus 269 ~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 269 DELREYCIQAFESFVRR 285 (1230)
T ss_dssp TTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999999999988875
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.86 E-value=0.0011 Score=62.59 Aligned_cols=220 Identities=12% Similarity=0.111 Sum_probs=154.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh-HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-
Q 010064 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN-KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN- 252 (519)
Q Consensus 175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n-k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~- 252 (519)
.+..|+.+|...|+.++..++.+|-++-..-+.. +..+++ ..+|.++.++++. +..+.-.|+.+|..|-.+.+.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~---dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQE---NEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCST---THHHHHHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhcc---chhHHHHHHHHHHHHHcCCCCC
Confidence 5678999999999999999999999999853333 434444 4899999999998 899999999999887655432
Q ss_pred hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHh
Q 010064 253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNL 330 (519)
Q Consensus 253 k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nL 330 (519)
...+ .-.+..|+.++.+ .+.-....|+..|.-|..-.... .++..+.+++. +..++..++.+|.|+
T Consensus 110 ~~~y--~Kl~~aL~dlik~----~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 110 SKTF--LKAAKTLVSLLES----PDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp HHHH--HHHHHHHHHHTTS----CCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHhcC----CCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 2222 1235677777776 79999999999999883222121 23456677775 455999999999999
Q ss_pred cCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh--hhHHHHHHcCcHHHHHHHh-hcCCHHHHHH
Q 010064 331 VSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY--GDRQAMIEAGIASALLELT-LLGSTLAQKR 407 (519)
Q Consensus 331 s~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~--~~~~~i~~~G~i~~Ll~Ll-~~gs~~~~~~ 407 (519)
+...+....+. ..+.-+-++|+ +.++.+++.|..++-.+...+- +....+. ++....-.+. ..|.|..+.+
T Consensus 178 a~~S~D~~i~~---~I~~eI~elL~-~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~k 251 (265)
T 3b2a_A 178 LNSSADSGHLT---LILDEIPSLLQ-NDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLK 251 (265)
T ss_dssp GGGCSSCCCGG---GTTTTHHHHHT-CSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHH
T ss_pred hcccCCHHHHH---HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHH
Confidence 98443333222 35667888998 6799999999999999887632 1111111 1222223333 4789999999
Q ss_pred HHHHHHHhh
Q 010064 408 ASRILECLR 416 (519)
Q Consensus 408 A~~~L~~l~ 416 (519)
|...-..+.
T Consensus 252 a~~v~~~le 260 (265)
T 3b2a_A 252 AKKVSDLID 260 (265)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888766654
No 72
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.86 E-value=1.5e-06 Score=75.54 Aligned_cols=119 Identities=16% Similarity=0.136 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
.++.++..|++++..+|..|++.|..+.. ..++.|+.+|+++++.++..++++|.++.. +
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~------ 72 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E------ 72 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H------
Confidence 36778888888888888888877765431 126888899988899999999999988763 1
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
.+++.|+.+++++ ++.++..++++|..+. ...+++.|+.++.. .+..++..|+.+|.+|
T Consensus 73 ---~a~~~L~~~L~d~---~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d----~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ---RAVEPLIKLLEDD---SGFVRSGAARSLEQIG----------GERVRAAMEKLAET----GTGFARKVAVNYLETH 131 (131)
T ss_dssp ---HHHHHHHHHHHHC---CTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTS----CCTHHHHHHHHHGGGC
T ss_pred ---HHHHHHHHHHcCC---CHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhC----CCHHHHHHHHHHHHhC
Confidence 2578888888877 7889998888888764 23468888888876 6788888888887653
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.77 E-value=0.00013 Score=69.83 Aligned_cols=183 Identities=10% Similarity=0.071 Sum_probs=130.8
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCCh-hhhhhCCChHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcCCC
Q 010064 219 HKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSNK-PIIGSSGAVPFLVKTLK-NSDKKVSPQAKQDALRALYNLSIFP 295 (519)
Q Consensus 219 ~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~k-~~I~~~gai~~LV~lL~-~~~~~~~~~~~~~A~~aL~nLs~~~ 295 (519)
+.+.+.+.+. +...+..++..|..+... +... ..+ ...++.|..++. . .+..++..|+.+|..|+..-
T Consensus 18 ~~l~~~l~s~---~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd----~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 18 KDFYDKLEEK---KWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKD----SNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp TTHHHHHTCS---SHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccC---CHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHH
Confidence 3467778777 788898888888776543 2210 111 245777888885 6 69999999999999998532
Q ss_pred ccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHH
Q 010064 296 SNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVM 373 (519)
Q Consensus 296 ~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL 373 (519)
.....-.-...++.|+..++|+ .+++.|..+|.++..... + ..+++.|...|. +.++.++..++..|..+
T Consensus 89 ~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~---~~ll~~l~~~l~-~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 89 AKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----L---EAQQESIVESLS-NKNPSVKSETALFIARA 160 (242)
T ss_dssp GGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----H---HHHHHHHHHHTT-CSCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----H---HHHHHHHHHHHc-CCChHHHHHHHHHHHHH
Confidence 2111112234788888888764 489999999999987432 1 136778888898 57899999999999996
Q ss_pred hcC-Chh--hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCC
Q 010064 374 AHK-SYG--DRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKG 420 (519)
Q Consensus 374 ~~~-~~~--~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~ 420 (519)
... .++ ....+ ..++|.|+.++.+..+.+|..|..+|..+...-+
T Consensus 161 l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 161 LTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 543 232 12222 2589999999999999999999999999885433
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.76 E-value=2.8e-06 Score=73.73 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=88.4
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC
Q 010064 173 LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN 252 (519)
Q Consensus 173 ~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~ 252 (519)
...++.|+.+|+++++.++..|+++|.++... .++.|+.+++++ ++.++..++++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~---~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNE---DWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCS---CHHHHHHHHHHHGGGCS----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCC---CHHHHHHHHHHHHhcCC----
Confidence 45788999999999999999999999877532 269999999987 89999999999887752
Q ss_pred hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHH
Q 010064 253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSN 329 (519)
Q Consensus 253 k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~n 329 (519)
..+++.|+.++.+ .+..++..|+++|.++.. ..+++.|+.+|.++ .++..|..+|.+
T Consensus 72 ------~~a~~~L~~~L~d----~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ------ERAVEPLIKLLED----DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ------HHHHHHHHHHHHH----CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3468999999987 689999999999999862 24678899998654 488888888764
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00013 Score=70.57 Aligned_cols=188 Identities=11% Similarity=0.083 Sum_probs=128.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HhccChhhHHHHHh-cCCHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCh-hhHH-H
Q 010064 137 VVKDLQSESEEQRREAASKVRS-LAKENSETRVTLAM-LGAIPPLAGML-DFQLADSQISSLYALLNLGIGND-LNKA-A 211 (519)
Q Consensus 137 Lv~~L~s~~~~~~~~Aa~~L~~-La~~~~~~r~~l~~-~G~i~~Lv~lL-~s~~~~~~~~a~~aL~NLa~~~~-~nk~-~ 211 (519)
+.+.+.+.++..|..|+..|.. +..+.+.....-.+ ..++..|...| +..+..++..|+.+|..|+.+-. ..-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3455689999999999999999 87543222100001 12467788888 67899999999999999996421 1111 1
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN 290 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~n 290 (519)
... -++|.++..+++. ...+++.+..+|..+...- +.-..---...++.|+..|.+ .+++++..++.+|..
T Consensus 101 y~~-~llp~ll~~l~dk---k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~----k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 101 YVS-LVFTPLLDRTKEK---KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH----KTPQIRMECTQLFNA 172 (249)
T ss_dssp HHH-HHHHHHHHGGGCC---CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC----SSHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC----CChHHHHHHHHHHHH
Confidence 212 2789999999988 7889888888887766432 111000001257778888877 689999999999999
Q ss_pred hcCCCcc--HH--HHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcC
Q 010064 291 LSIFPSN--IS--FILETDLIRYLLEMLGDM--ELSERILSILSNLVS 332 (519)
Q Consensus 291 Ls~~~~n--~~--~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~ 332 (519)
+...... .. ..+....++.|..++.|. +++..|..+|+.++.
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8854432 12 222357899999999754 599999999988764
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.58 E-value=0.0012 Score=67.13 Aligned_cols=242 Identities=14% Similarity=0.085 Sum_probs=155.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
...+++.+.+.|...|.-.--.+.++++..++. .+ ++..|.+=++++++-++-.|+++|+++... + ++
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--iL----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~----m~ 137 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--II----VTSSLTKDMTGKEDSYRGPAVRALCQITDS--T----ML 137 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--GG----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--T----TH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--HH----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--H----HH
Confidence 567888999999999999888888888764332 12 678888889999999999999999999974 2 22
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~ 293 (519)
+ .+.+.+-+.|.+. ++.++..|+-+...|-.. +.+.+ .+.++.+-.++.. .++.++..|+.+|+.+..
T Consensus 138 ~-~l~~~lk~~L~d~---~pyVRk~A~l~~~kL~~~--~pe~v--~~~~~~l~~ll~d----~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 138 Q-AIERYMKQAIVDK---VPSVSSSALVSSLHLLKC--SFDVV--KRWVNEAQEAASS----DNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp H-HHHHHHHHHHTCS---SHHHHHHHHHHHHHHTTT--CHHHH--HTTHHHHHHHTTC----SSHHHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHcCCC---CHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHhcC----CCccHHHHHHHHHHHHHh
Confidence 2 2567788888888 899999998888887643 33433 3688999999887 689999999999999987
Q ss_pred CCccHHHHHhcCcHHHHHHHcC-----CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHH
Q 010064 294 FPSNISFILETDLIRYLLEMLG-----DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASY 368 (519)
Q Consensus 294 ~~~n~~~l~~~g~v~~Lv~lL~-----~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~ 368 (519)
.+.. ++..|+..+. ++=.+...+.++..+...++.. .. ...++.|..+|+ +.++.+.-+|+.
T Consensus 206 ~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~-~~~~~~l~~~L~-~~~~aVvyEa~k 272 (355)
T 3tjz_B 206 NDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RD-SPLFDFIESCLR-NKHEMVVYEAAS 272 (355)
T ss_dssp TCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCC-CSSHHHHHHHHH
T ss_pred hchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hH-HHHHHHHHHHHc-CCChHHHHHHHH
Confidence 5421 2333444432 2223334444444443321000 11 345667777888 678999999999
Q ss_pred HHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 369 VLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 369 ~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
+++.|...+.. +. ..++..|..++.+.++.+|--|.+.|..+..
T Consensus 273 ~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 273 AIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp HHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred HHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 99998653222 11 2335666677778888888888777777764
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.52 E-value=0.023 Score=51.84 Aligned_cols=212 Identities=12% Similarity=0.083 Sum_probs=152.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCChhhHH
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIGNDLNKA 210 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~NLa~~~~~nk~ 210 (519)
+.+..++..|..+-+.+|.+|+..|..+++.-++.-..+ +..|+.|++ +....+....+++++.++.-+++--.
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH
Confidence 348899999998889999999999999998887777655 457777774 57788888899999999976554322
Q ss_pred HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064 211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN 290 (519)
Q Consensus 211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~n 290 (519)
+.||.|..-..-+ ++..+-....+|-.+.... ... -.+.+.-+..++.+ .+..-+..|+..+..
T Consensus 107 -----~vVp~lfanyrig---d~kikIn~~yaLeeIaran--P~l--~~~v~rdi~smlts----kd~~Dkl~aLnFi~a 170 (253)
T 2db0_A 107 -----SMIPVLFANYRIG---DEKTKINVSYALEEIAKAN--PML--MASIVRDFMSMLSS----KNREDKLTALNFIEA 170 (253)
T ss_dssp -----HHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHC--HHH--HHHHHHHHHHHTSC----SSHHHHHHHHHHHHT
T ss_pred -----hhHHHHHHHHhcC---CccceecHHHHHHHHHHhC--hHH--HHHHHHHHHHHhcC----CChHHHHHHHHHHHH
Confidence 3678888888888 8999999988888776432 111 23356677778877 455555555555554
Q ss_pred hcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHH
Q 010064 291 LSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKAS 367 (519)
Q Consensus 291 Ls~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~ 367 (519)
+.. |...- -.-.+|.|..+|.|.+ ++..|+.+|.||+. ++..|+.+.+ .++-++ ..+..++....
T Consensus 171 lGe---n~~~y-v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~-------kl~e~~-D~S~lv~~~V~ 238 (253)
T 2db0_A 171 MGE---NSFKY-VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK-------RLEELN-DTSSLVNKTVK 238 (253)
T ss_dssp CCT---TTHHH-HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH-------HHHHCC-CSCHHHHHHHH
T ss_pred Hhc---cCccc-cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH-------HHHHhc-CcHHHHHHHHH
Confidence 443 32221 2457889999996654 88899999999998 6665655544 344555 45788888888
Q ss_pred HHHHHHhcC
Q 010064 368 YVLMVMAHK 376 (519)
Q Consensus 368 ~~L~nL~~~ 376 (519)
..|..|+.-
T Consensus 239 egL~rl~l~ 247 (253)
T 2db0_A 239 EGISRLLLL 247 (253)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 888877653
No 78
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.50 E-value=0.015 Score=53.02 Aligned_cols=211 Identities=17% Similarity=0.174 Sum_probs=147.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhccCCCC
Q 010064 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIE-SPVAPNPSVSEAIVANFLGLSALDSN 252 (519)
Q Consensus 174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~-s~~~~~~~~~~~a~~aL~~LS~~~~~ 252 (519)
.++..++.+|+.+--.+|.+|+..+.+++..-++-... .+..|+-+++ +. ...+...++.++-.++.-
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksE---aIpltqeIa~a~G~la~i--- 100 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSE---AIPLTQEIAKAFGQMAKE--- 100 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcc---cCchHHHHHHHHhHHHHh---
Confidence 46788999998888899999999999999875554443 3456666654 44 566666677777777642
Q ss_pred hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHh
Q 010064 253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNL 330 (519)
Q Consensus 253 k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nL 330 (519)
++.++. +.||.|..=..- ++++++.+-..+|-.++..+.. +-.+++.-+..++.+++ -+..|+.. +
T Consensus 101 ~Pe~v~-~vVp~lfanyri----gd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnF---i 168 (253)
T 2db0_A 101 KPELVK-SMIPVLFANYRI----GDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNF---I 168 (253)
T ss_dssp CHHHHH-HHHHHHHHHSCC----CSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHH---H
T ss_pred CHHHHH-hhHHHHHHHHhc----CCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHH---H
Confidence 333321 234444444444 7999999999999998864421 22345677888887665 23334444 4
Q ss_pred cCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHH
Q 010064 331 VSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASR 410 (519)
Q Consensus 331 s~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~ 410 (519)
..-.++.-..+. -.+|.|..+|. .++..++..|+.+|.+|+..++..|..+. .-++-+.+.+..+++....
T Consensus 169 ~alGen~~~yv~--PfLprL~aLL~-D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~e 239 (253)
T 2db0_A 169 EAMGENSFKYVN--PFLPRIINLLH-DGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKE 239 (253)
T ss_dssp HTCCTTTHHHHG--GGHHHHHGGGG-CSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHH
T ss_pred HHHhccCccccC--cchHHHHHHHc-CcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHH
Confidence 443344444444 38999999999 68899999999999999999888766543 2355667888999999999
Q ss_pred HHHHhh
Q 010064 411 ILECLR 416 (519)
Q Consensus 411 ~L~~l~ 416 (519)
.|..+.
T Consensus 240 gL~rl~ 245 (253)
T 2db0_A 240 GISRLL 245 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988876
No 79
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.49 E-value=0.002 Score=64.34 Aligned_cols=149 Identities=14% Similarity=0.080 Sum_probs=123.3
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHH-hcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHH
Q 010064 263 PFLVKTLKNSDKKVSPQAKQDALRALYN-LSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKA 339 (519)
Q Consensus 263 ~~LV~lL~~~~~~~~~~~~~~A~~aL~n-Ls~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~ 339 (519)
..++.-|.+ .+...+..++.-|.. ++.+.+-...+++.+++..|+.++. +.+.+..++.+|.+|-.+..+...
T Consensus 121 ~~iiekL~~----~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 121 NAILEKLYS----SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHH----CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHhc----CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence 345566666 578889999999998 6677788999999999999999994 567999999999999999889988
Q ss_pred HhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC----------cHHHHHHHhh---cCCHHHHH
Q 010064 340 ISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAG----------IASALLELTL---LGSTLAQK 406 (519)
Q Consensus 340 i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G----------~i~~Ll~Ll~---~gs~~~~~ 406 (519)
++.+..+|..|..++. +....+.+.|..+|.+++..++.+...+.++= -.+.|+.++. .++..++.
T Consensus 197 vvs~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred hhCCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 8876789999999999 67899999999999999988776655544321 2778999997 67899999
Q ss_pred HHHHHHHHhh
Q 010064 407 RASRILECLR 416 (519)
Q Consensus 407 ~A~~~L~~l~ 416 (519)
.|..++-.+-
T Consensus 276 ~amtLIN~lL 285 (339)
T 3dad_A 276 YTVTLINKTL 285 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888876543
No 80
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.43 E-value=0.015 Score=65.80 Aligned_cols=242 Identities=12% Similarity=0.060 Sum_probs=157.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCChhhHH
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML-DFQLADSQISSLYALLNLGIGNDLNKA 210 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL-~s~~~~~~~~a~~aL~NLa~~~~~nk~ 210 (519)
+.+..|...|...+...+..|+..|..+--+. -+.. ++..|+..+ +..+..++..++.+|..+..++++
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e--- 541 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE--- 541 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---
Confidence 34666777777666655666766766653222 1111 345666654 346788999999999998887444
Q ss_pred HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064 211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN 290 (519)
Q Consensus 211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~n 290 (519)
.++.+++.|.... ++.++..++.++ .++.... ++..+|..|+..+.+. .+..+++.|+.+|..
T Consensus 542 ------~~~~li~~L~~~~--dp~vRygaa~al-glAyaGT-----Gn~~aIq~LL~~~~~d---~~d~VRraAViaLGl 604 (963)
T 4ady_A 542 ------LADDLITKMLASD--ESLLRYGGAFTI-ALAYAGT-----GNNSAVKRLLHVAVSD---SNDDVRRAAVIALGF 604 (963)
T ss_dssp ------GGHHHHHHHHHCS--CHHHHHHHHHHH-HHHTTTS-----CCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhCC--CHHHHHHHHHHH-HHHhcCC-----CCHHHHHHHHHHhccC---CcHHHHHHHHHHHHh
Confidence 5677777776431 566666554443 3333222 1233577788877764 678899999999999
Q ss_pred hcCCCccHHHHHhcCcHHHHHHHc---CCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHH
Q 010064 291 LSIFPSNISFILETDLIRYLLEML---GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKAS 367 (519)
Q Consensus 291 Ls~~~~n~~~l~~~g~v~~Lv~lL---~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~ 367 (519)
+....+ ..++.++.+| .++.++..|..+|+.++..... .. ++..|..+++ ..++.++..|+
T Consensus 605 I~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~------aid~L~~L~~-D~d~~Vrq~Ai 668 (963)
T 4ady_A 605 VLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QS------AIDVLDPLTK-DPVDFVRQAAM 668 (963)
T ss_dssp HTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HH------HHHHHHHHHT-CSSHHHHHHHH
T ss_pred hccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HH------HHHHHHHHcc-CCCHHHHHHHH
Confidence 876653 2455666655 3566999999999999874332 22 4446667777 67899999999
Q ss_pred HHHHHHhcCChhh-HHHHHHcCcHHHHHHHhhc--CCHHHHHHHHHHHHHhhhc
Q 010064 368 YVLMVMAHKSYGD-RQAMIEAGIASALLELTLL--GSTLAQKRASRILECLRVD 418 (519)
Q Consensus 368 ~~L~nL~~~~~~~-~~~i~~~G~i~~Ll~Ll~~--gs~~~~~~A~~~L~~l~~~ 418 (519)
.+|..+..+..+. ...+ ......|...+.+ .++.++-.|..++..+.-.
T Consensus 669 ~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 669 IALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp HHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 9999998764432 0011 1123345566653 4678888888888888733
No 81
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00099 Score=64.38 Aligned_cols=189 Identities=9% Similarity=0.022 Sum_probs=127.0
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHH-hcc-CCCChhhhhh-CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-
Q 010064 221 MLKLIESPVAPNPSVSEAIVANFLG-LSA-LDSNKPIIGS-SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS- 296 (519)
Q Consensus 221 Lv~lL~s~~~~~~~~~~~a~~aL~~-LS~-~~~~k~~I~~-~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~- 296 (519)
+.+.+++. +..-+.+++..|.. +.. .+.......+ ...+..|.+.+... .+..++..|+.+|..|+..-.
T Consensus 21 f~~~l~s~---~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D---~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 21 FQERITSS---KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKD---ANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp HHHHHTCS---SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhhcC---CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHhccc
Confidence 34566776 78888888888888 753 2221100112 24577778888432 789999999999999984221
Q ss_pred -cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-CcccHHHH-hhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064 297 -NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS-TPEGRKAI-SRVPDAFPILVDVLNWTDSPGCQEKASYVLM 371 (519)
Q Consensus 297 -n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~e~r~~i-~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~ 371 (519)
....-.-.-.++.++..+++ +.+++.+..+|..++. .+..-..- . ..+++.|+..|. +.++.+++.++.+|.
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l--~~ll~~l~~~l~-~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRN--EDMLKDILEHMK-HKTPQIRMECTQLFN 171 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT--HHHHHHHHHHTT-CSSHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcH--HHHHHHHHHHHc-CCChHHHHHHHHHHH
Confidence 11101112368888888876 4588888888888776 21111100 1 136778888998 569999999999999
Q ss_pred HHhcCChhh-HH--HHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 372 VMAHKSYGD-RQ--AMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 372 nL~~~~~~~-~~--~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
.++...... .+ ..+...++|.|..++.+.++.+|..|..+|.-+..-
T Consensus 172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 888653321 11 122257899999999999999999999999998854
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.32 E-value=0.0015 Score=68.35 Aligned_cols=232 Identities=18% Similarity=0.187 Sum_probs=154.2
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcC--CHHHHHHhhcC---------------C--CHHHHHHHHH
Q 010064 137 VVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLG--AIPPLAGMLDF---------------Q--LADSQISSLY 196 (519)
Q Consensus 137 Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G--~i~~Lv~lL~s---------------~--~~~~~~~a~~ 196 (519)
++..|.. ++.+.+.-++.++..|.+.+ ++|..+.+.+ .+++++.+++. + ...++-.++.
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 4445554 24455667899999999764 9999887643 47788765541 1 3567899999
Q ss_pred HHHHhcCCChhhHHHHHhcCcH--HHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-Ch-----hhhhhCCChHHHHHH
Q 010064 197 ALLNLGIGNDLNKAAIVKAGAV--HKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NK-----PIIGSSGAVPFLVKT 268 (519)
Q Consensus 197 aL~NLa~~~~~nk~~iv~aG~v--~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~k-----~~I~~~gai~~LV~l 268 (519)
+++-|+.. ++....+...++. +.|+.+++... .+.+...++++|.||..... .. ..+...++ +.+++.
T Consensus 251 ~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~--KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~ 326 (480)
T 1ho8_A 251 LIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITI--KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQS 326 (480)
T ss_dssp HHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHH
T ss_pred HHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHH
Confidence 99999995 6677777777754 77778777642 68999999999999876542 21 12223344 556666
Q ss_pred hhcCCCCCCHHHHHHHHHHH-------HHhcC---------------CCc---------cHHHHHhc--CcHHHHHHHcC
Q 010064 269 LKNSDKKVSPQAKQDALRAL-------YNLSI---------------FPS---------NISFILET--DLIRYLLEMLG 315 (519)
Q Consensus 269 L~~~~~~~~~~~~~~A~~aL-------~nLs~---------------~~~---------n~~~l~~~--g~v~~Lv~lL~ 315 (519)
|... +=.++++..+.-... ..+++ ++. |..++-+. ..+..|+.+|.
T Consensus 327 L~~r-k~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~ 405 (480)
T 1ho8_A 327 LSER-KYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQ 405 (480)
T ss_dssp HHSS-CCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHH
T ss_pred HhhC-CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 6653 224555444332221 11221 111 11122222 36788889885
Q ss_pred C------------HHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 316 D------------MELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 316 ~------------~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
+ +.+..-||.=|+.++. +|++|..+.+ .|+=..++++|. +.+++++.+|..++--+...
T Consensus 406 ~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~-lg~K~~VM~Lm~-h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 406 AKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLN-HSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTS-CSSHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHH-cCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh
Confidence 2 2266678888999998 8999988777 688888999999 67999999999888776643
No 83
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.24 E-value=0.0038 Score=62.32 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=121.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
.+..+++.|.+++...+..++..|..+-..|...-..|+..+++..|+.+....+...+..++.||.+|-.. ...-.-+
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gv 197 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccch
Confidence 466788888888999999999999995546778999999999999999999999999999999999999985 6666566
Q ss_pred Hh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-Chhhhhh----------CCChHHHHHHhhcCCCCCCHHH
Q 010064 213 VK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NKPIIGS----------SGAVPFLVKTLKNSDKKVSPQA 280 (519)
Q Consensus 213 v~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~k~~I~~----------~gai~~LV~lL~~~~~~~~~~~ 280 (519)
+. ...|..+..++.+. +..+...|+.+|..+....+ +...+.+ .-.+..|+.+|.+. ...+.++
T Consensus 198 vs~~~fI~~lyslv~s~---~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~-~~~D~el 273 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASL---SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEK-NGADPEL 273 (339)
T ss_dssp HHCHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTT-TSCCHHH
T ss_pred hCCHHHHHHHHHHHcCc---cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhcc-CCCCHHH
Confidence 64 46789999999876 78999999999988876554 3333322 12377899999721 1168899
Q ss_pred HHHHHHHHHHhc
Q 010064 281 KQDALRALYNLS 292 (519)
Q Consensus 281 ~~~A~~aL~nLs 292 (519)
+.+|...+--+.
T Consensus 274 q~~amtLIN~lL 285 (339)
T 3dad_A 274 LVYTVTLINKTL 285 (339)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998877665443
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.22 E-value=0.012 Score=67.19 Aligned_cols=262 Identities=15% Similarity=0.147 Sum_probs=174.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCh---hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENS---ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKA 210 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~---~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~ 210 (519)
+..+.+.+...... ..|+..+..|+.... ..--.+ .+.+|.++..+......++.+|..++..+...-+.+..
T Consensus 56 ~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 56 FGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 66666666655444 778888888885531 222222 25788888888777788998888887777754333322
Q ss_pred HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALRAL 288 (519)
Q Consensus 211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~aL 288 (519)
..++|.|+..|++.. .-..+..|+.++-.|+... ...+.. ...||.+-..+.. ..+++...|..++
T Consensus 132 ----~~~~~~~~~~~~~~~--kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d----~k~~v~~~~~~~~ 199 (986)
T 2iw3_A 132 ----KALLPHLTNAIVETN--KWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWD----TKKEVKAAATAAM 199 (986)
T ss_dssp ----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhccc----CcHHHHHHHHHHH
Confidence 347899999887642 4677888888888887543 344443 5667777777766 7899999999999
Q ss_pred HHhcCCCccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHH
Q 010064 289 YNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASY 368 (519)
Q Consensus 289 ~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~ 368 (519)
..+|..-+|... ...+|.|+..+.+|+-..+++..|+.-+-..+.-...... .+|.|..-|. .....+++.++-
T Consensus 200 ~~~~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~--~~p~l~r~l~-~~~~~~~r~~~~ 273 (986)
T 2iw3_A 200 TKATETVDNKDI---ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSI--MVPLLSRGLN-ERETGIKRKSAV 273 (986)
T ss_dssp HHHGGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHH--HHHHHHHHHT-SSSHHHHHHHHH
T ss_pred HHHHhcCCCcch---hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHH--HHHHHHhhhc-cCcchhheeeEE
Confidence 988865444332 3568889998877654444444443322222222222221 4566666676 457788899999
Q ss_pred HHHHHhcCChhhHH-HHHHcCcHHHHHHHhhc-CCHHHHHHHHHHHHHhhh
Q 010064 369 VLMVMAHKSYGDRQ-AMIEAGIASALLELTLL-GSTLAQKRASRILECLRV 417 (519)
Q Consensus 369 ~L~nL~~~~~~~~~-~i~~~G~i~~Ll~Ll~~-gs~~~~~~A~~~L~~l~~ 417 (519)
++-|||.--.+.+. +-+-...+|.|...... .+|++|..|.+++.-|..
T Consensus 274 ~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 274 IIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred EEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 99999974322222 22345677887776664 689999999999999974
No 85
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.01 E-value=0.0051 Score=62.48 Aligned_cols=240 Identities=15% Similarity=0.030 Sum_probs=132.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
.+..+.+.++++|+-.+-.|+++|+++...+ .-.. +.+++.+.|.+.++-++..|+.+...|...+++.
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---- 173 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---- 173 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----
Confidence 3677888889999999999999999998443 3332 4567888889999999999999999999865553
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
++ +.++.+-+++.+. ++-++-.|+++|..+...+ +. ++..|+..+... ...++-.+..-+..+..+.
T Consensus 174 v~-~~~~~l~~ll~d~---n~~V~~~Al~lL~ei~~~d--~~------a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~ 240 (355)
T 3tjz_B 174 VK-RWVNEAQEAASSD---NIMVQYHALGLLYHVRKND--RL------AVSKMISKFTRH-GLKSPFAYCMMIRVASRQL 240 (355)
T ss_dssp HH-TTHHHHHHHTTCS---SHHHHHHHHHHHHHHHTTC--HH------HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC-
T ss_pred HH-HHHHHHHHHhcCC---CccHHHHHHHHHHHHHhhc--hH------HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhc
Confidence 22 6889999999888 8899989999898887543 11 456667766652 1125666666666555544
Q ss_pred CCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064 293 IFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL 370 (519)
Q Consensus 293 ~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L 370 (519)
..++. -.....++.|...|. ++.+.-+|+.++..|...+. .+.. .++..|..+|. +.++.+|-.|...|
T Consensus 241 ~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~---~~~~--~a~~~L~~fLs-s~d~niryvaLr~L 311 (355)
T 3tjz_B 241 EDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA---KELA--PAVSVLQLFCS-SPKAALRYAAVRTL 311 (355)
T ss_dssp -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHH-SSSSSSHHHHHHCC
T ss_pred cccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH---HHHH--HHHHHHHHHHc-CCCchHHHHHHHHH
Confidence 33210 011234445555554 34588899999988866321 1222 35667777787 56788998888888
Q ss_pred HHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHH
Q 010064 371 MVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASR 410 (519)
Q Consensus 371 ~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~ 410 (519)
..+....++.-+. .-.-+.+++.+++..+...|..
T Consensus 312 ~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 312 NKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHH
Confidence 8888764432111 2233455666666555554443
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.68 E-value=0.014 Score=66.67 Aligned_cols=260 Identities=13% Similarity=0.121 Sum_probs=167.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh--hHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL--NKAA 211 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~--nk~~ 211 (519)
+..+++.+...+...+..|+..|..+...+.... ....+++..|.+.+...... +.|+.++..|+..... ..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~ 91 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP 91 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc
Confidence 5567777776555566777778877665431111 11135678888888764333 8999999999954322 1222
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL 291 (519)
++ .+.+|.++....+. ...++.+|..++..+...-+ ...+ ...+|.|+..|... ..-+.+..|+.+|..|
T Consensus 92 ~~-~~~~~~~~~~~~dk---~~~v~~aa~~~~~~~~~~~~-~~a~--~~~~~~~~~~~~~~---~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 92 YI-VQLVPAICTNAGNK---DKEIQSVASETLISIVNAVN-PVAI--KALLPHLTNAIVET---NKWQEKIAILAAFSAM 161 (986)
T ss_dssp HH-HTTHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHSC-GGGH--HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHH
T ss_pred ch-HHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHhCC-HHHH--HHHHHHHHHHhccc---cchHHHHHHHHHHHHH
Confidence 22 25788888888887 78888888776666543211 1111 45689999999773 5789999999999999
Q ss_pred cCCCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHH
Q 010064 292 SIFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYV 369 (519)
Q Consensus 292 s~~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~ 369 (519)
+..........=-..||.+...+-| +++...|..++..++..-.++. ....+|.|++-+.+ |.-...++..
T Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d----~~~~~~~~~~~~~~---p~~~~~~~~~ 234 (986)
T 2iw3_A 162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD----IERFIPSLIQCIAD---PTEVPETVHL 234 (986)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT----TGGGHHHHHHHHHC---TTHHHHHHHH
T ss_pred HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc----hhhhHHHHHHHhcC---hhhhHHHHHH
Confidence 8643221111123567777777765 4699999999999987444443 24588999999983 3334344444
Q ss_pred HHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064 370 LMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416 (519)
Q Consensus 370 L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~ 416 (519)
|..-+.-.+-..-.+ +=.+|.|.+=+...+...+++++.++.||+
T Consensus 235 l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~ 279 (986)
T 2iw3_A 235 LGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMC 279 (986)
T ss_dssp HTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred hhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchh
Confidence 443332211111110 114677777777889999999999999999
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.072 Score=51.65 Aligned_cols=183 Identities=14% Similarity=0.167 Sum_probs=116.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccChhh--HHHHH-hc-CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh-----
Q 010064 137 VVKDLQSESEEQRREAASKVRSLAKENSET--RVTLA-ML-GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL----- 207 (519)
Q Consensus 137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~--r~~l~-~~-G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~----- 207 (519)
+-+.|.+.++..|.+|+..|..+....... ..... .. ..++.+-.++...+..++..++.+|..++.....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567899999999999999999876443211 11111 12 2455666788889999999999999988753221
Q ss_pred hHHHHHhcCcHHHHHH-hhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064 208 NKAAIVKAGAVHKMLK-LIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR 286 (519)
Q Consensus 208 nk~~iv~aG~v~~Lv~-lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~ 286 (519)
......-..++|.|+. .+.+. ...++..+..++..+......... .+..++..+.+ .++.++..++.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~---k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~----Knpkv~~~~l~ 161 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSS---RATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEK----KLPKLIAAAAN 161 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCC---CHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGC----SCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCc---cHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhc----cCHHHHHHHHH
Confidence 1222223457888886 47776 788888888877776543222222 24555556666 79999999999
Q ss_pred HHHHhcCC--Cc--cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC
Q 010064 287 ALYNLSIF--PS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVS 332 (519)
Q Consensus 287 aL~nLs~~--~~--n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~ 332 (519)
.|.++... .. +....+ ..+++.+..+|. +++++..|..++..|-.
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 99887532 11 111111 123445566665 45699999888887754
No 88
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.88 E-value=0.096 Score=55.58 Aligned_cols=238 Identities=13% Similarity=0.085 Sum_probs=150.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhh--cC-----C---CHHHHHHHHHHHH
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAML--GAIPPLAGML--DF-----Q---LADSQISSLYALL 199 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~--G~i~~Lv~lL--~s-----~---~~~~~~~a~~aL~ 199 (519)
+.++.|+..|-+..++.|--|+..|+.+.+............ ...--|+.+| +. . -..+++.|+++|+
T Consensus 174 qfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 174 DFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp GTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 346788888889999999999999999876642110000011 2222333322 21 1 1469999999999
Q ss_pred HhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh-CCChHHHHHHhhcCCCCCCH
Q 010064 200 NLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS-SGAVPFLVKTLKNSDKKVSP 278 (519)
Q Consensus 200 NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~-~gai~~LV~lL~~~~~~~~~ 278 (519)
.+ ..-+.. ..++..|+..+..+ .-+++..+.-.|..+ +..+.+ .++++.++.-|.. .+.
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~---~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D----~DD 313 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSG---DWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSS----PDE 313 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCS---CHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTC----SSH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCC---CeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCC----ccc
Confidence 99 654443 44566666555665 678888777777777 233322 4556666666766 689
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc----CC-HH---HHHHHHHHHHHhcCCcccHHHHhhcCCcchhh
Q 010064 279 QAKQDALRALYNLSIFPSNISFILETDLIRYLLEML----GD-ME---LSERILSILSNLVSTPEGRKAISRVPDAFPIL 350 (519)
Q Consensus 279 ~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL----~~-~~---v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~L 350 (519)
+++..|+.+|.-++ .+ ..++.++.++ .+ ++ -....+..|+.|+..+. .+-.+ +..+|.|
T Consensus 314 DVRAVAAetLiPIA-~p---------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~--~a~~d-p~LVPRL 380 (800)
T 3oc3_A 314 DIKLLSAELLCHFP-IT---------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP--ELSIP-PERLKDI 380 (800)
T ss_dssp HHHHHHHHHHTTSC-CS---------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT--TCCCC-SGGGGGT
T ss_pred HHHHHHHHHhhhhc-ch---------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc--ccccC-hHHHHHH
Confidence 99999999999998 33 2333343333 21 11 34456677777777543 12223 5799999
Q ss_pred hhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 010064 351 VDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILE 413 (519)
Q Consensus 351 v~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~ 413 (519)
.-++. +.-+.++..+..+|..+.. ...-.. ....++...++.+++.+..+..
T Consensus 381 ~PFLR-HtITSVR~AVL~TL~tfL~--~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 381 FPCFT-SPVPEVRTSILNMVKNLSE--ESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGGT-CSSHHHHHHHHHHTTTCCC--HHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred Hhhhc-CCcHHHHHHHHHHHHHHHh--hhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 99999 5688999999999887771 121111 2244556778888877766664
No 89
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.38 E-value=1.6 Score=49.72 Aligned_cols=255 Identities=10% Similarity=0.088 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc------CCCHHHHHHHHHHHHHhcCCChhhHHHHHhc-----C
Q 010064 148 QRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD------FQLADSQISSLYALLNLGIGNDLNKAAIVKA-----G 216 (519)
Q Consensus 148 ~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~------s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a-----G 216 (519)
.+..|...|..|+.... .. +. .-+++.+-.++. +.+...++.|+.+++.++.+...... -... .
T Consensus 377 ~R~aa~~~L~~l~~~~~--~~-v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~ 451 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNE--VL-VT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLN 451 (960)
T ss_dssp HHHHHHHHHHHHHHHCH--HH-HH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCC
T ss_pred cHHHHHHHHHHHHHHcc--hh-HH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccC-Cccccccccc
Confidence 45667788888886542 11 11 112334444454 45667899999999999753110000 0000 1
Q ss_pred cHHHHH----HhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 217 AVHKML----KLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 217 ~v~~Lv----~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
..+.|. ..+.++.+.++-++..++++|...+..- .+. . -...++.++..|.+ .+..++..|++||.+++
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~-~-l~~~l~~l~~~L~d----~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA-Q-LIELMPILATFLQT----DEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-H-HHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-H-HHHHHHHHHHHhCC----CChhHHHHHHHHHHHHH
Confidence 222222 2233331115888999999998887542 111 1 23356777777766 58999999999999998
Q ss_pred CCCc---------cHHHHHh--cCcHHHHHHHcCCH-----H--HHHHHHHHHHHhcC--CcccHHHHhhcCCcchhhhh
Q 010064 293 IFPS---------NISFILE--TDLIRYLLEMLGDM-----E--LSERILSILSNLVS--TPEGRKAISRVPDAFPILVD 352 (519)
Q Consensus 293 ~~~~---------n~~~l~~--~g~v~~Lv~lL~~~-----~--v~~~Al~~L~nLs~--~~e~r~~i~~~~g~i~~Lv~ 352 (519)
...+ ....+.. ...++.|+.++... + ..+.++.+|..++. .++... ... ..++.|..
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~--~l~~~L~~ 601 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP--QLLAQFIE 601 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH--HHHHHHHH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH--HHHHHHHH
Confidence 7421 1111111 23455555565431 1 23455555555443 111111 111 13333333
Q ss_pred hc----cCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 353 VL----NWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 353 lL----~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
.+ +..+++.....+..++..++.. .++.. .-+...++|.+..++..........+..++..+.+.
T Consensus 602 ~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 602 IVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 33 3345677777788888888875 23322 334456788888888876555666666666666543
No 90
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.27 E-value=0.28 Score=48.56 Aligned_cols=138 Identities=12% Similarity=0.140 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHhc--CcHHHHHHHcC--CHHHHHHHHHHHHHhcCC-cccHHHHhhcCCcchhh
Q 010064 276 VSPQAKQDALRALYNLSIFPSNISFILET--DLIRYLLEMLG--DMELSERILSILSNLVST-PEGRKAISRVPDAFPIL 350 (519)
Q Consensus 276 ~~~~~~~~A~~aL~nLs~~~~n~~~l~~~--g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~-~e~r~~i~~~~g~i~~L 350 (519)
..+..+.-++++|.|+..++..+..+... .++..+...+. +..++..+..++.|++.. ...+. ..+...++..+
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~-~~~~~~ll~~l 238 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN-IEGKAQCLSLI 238 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHH
Confidence 46677999999999999988877666643 33444444443 445888899999999872 11111 11111244455
Q ss_pred hhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 010064 351 VDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLL-GSTLAQKRASRILEC 414 (519)
Q Consensus 351 v~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~-gs~~~~~~A~~~L~~ 414 (519)
..++....+++..-.+.-+|++|...+.+.++.....|+...+-.+... ..+++.+.+..+|+.
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 5566545678888888999999998766555555556666655555544 467777777777654
No 91
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.99 E-value=1.1 Score=42.75 Aligned_cols=231 Identities=15% Similarity=0.199 Sum_probs=144.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhh-------cCCC----HHHH-HHHHHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGML-------DFQL----ADSQ-ISSLYALLN 200 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~lL-------~s~~----~~~~-~~a~~aL~N 200 (519)
+..++..|. +++.|..|+..|.+--..-++..-.+.. -|.+..|++=+ ..+. ..-+ -.|+..|--
T Consensus 5 i~qli~~L~--~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 5 IYQWINELS--SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC 82 (268)
T ss_dssp HHHHHHHTS--STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence 445555555 3445777877776643333455555655 56666665322 2111 2223 344444555
Q ss_pred hcCCChhhHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCC
Q 010064 201 LGIGNDLNKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKV 276 (519)
Q Consensus 201 La~~~~~nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~ 276 (519)
+|. +++-|..++++.+.-.|.-+|....- +-+-++-.+.+++..|...++. -..+.+.+.||..++.+.. +
T Consensus 83 vAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~----G 157 (268)
T 2fv2_A 83 VAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMES----G 157 (268)
T ss_dssp HHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHH----S
T ss_pred HHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhh----c
Confidence 666 59999999999887666666654421 1245667788888888866442 2333478999999999999 7
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHhc--------CcHHHHHHHc-C--CHHHHHHHHHHHHHhcCCcccHHHHhhc-C
Q 010064 277 SPQAKQDALRALYNLSIFPSNISFILET--------DLIRYLLEML-G--DMELSERILSILSNLVSTPEGRKAISRV-P 344 (519)
Q Consensus 277 ~~~~~~~A~~aL~nLs~~~~n~~~l~~~--------g~v~~Lv~lL-~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~-~ 344 (519)
+.-.+.-|.-++..+..++.....+... .++..++.-+ . ++.+...++++-..|+.++..|.++... +
T Consensus 158 selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP 237 (268)
T 2fv2_A 158 SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLP 237 (268)
T ss_dssp CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCc
Confidence 9999999999998887766554444432 2333444433 2 3448889999999999999999988752 0
Q ss_pred Ccc--hhhhhhccCCCCHHHHHHHHHHHHHH
Q 010064 345 DAF--PILVDVLNWTDSPGCQEKASYVLMVM 373 (519)
Q Consensus 345 g~i--~~Lv~lL~~s~~~~~qe~A~~~L~nL 373 (519)
..+ ..+..+++ +++..+..-...+.|+
T Consensus 238 ~~Lrd~tf~~~l~--~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 238 DQLKDTTFAQVLK--DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp GGGTSSTTHHHHT--SCHHHHHHHHHHHHHS
T ss_pred HHhhChHHHHHHh--cCHHHHHHHHHHHHhc
Confidence 111 12333444 4677766666666554
No 92
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.53 E-value=2.7 Score=47.86 Aligned_cols=217 Identities=10% Similarity=0.107 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHH----hcCCHHH----HHHhhcCC---CHHHHHHHHHHHHHhcCCChhhHHH
Q 010064 143 SESEEQRREAASKVRSLAKENSETRVTLA----MLGAIPP----LAGMLDFQ---LADSQISSLYALLNLGIGNDLNKAA 211 (519)
Q Consensus 143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~----~~G~i~~----Lv~lL~s~---~~~~~~~a~~aL~NLa~~~~~nk~~ 211 (519)
+.++..|..|+.++..++.........+. ...+.+. ++..|.++ ++-++..++++|..++..- .+.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~- 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKA- 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHH-
Confidence 45667788888888888743100000000 0012222 33344555 8999999999999998642 222
Q ss_pred HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC---------Chhhhhh--CCChHHHHHHhhcCCCCC-C-H
Q 010064 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS---------NKPIIGS--SGAVPFLVKTLKNSDKKV-S-P 278 (519)
Q Consensus 212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~---------~k~~I~~--~gai~~LV~lL~~~~~~~-~-~ 278 (519)
.. ..+++.++..|.++ +..++..|+.+|.++....+ .+..+.. ...++.|+.++... + . .
T Consensus 493 ~l-~~~l~~l~~~L~d~---~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~---~~~~~ 565 (960)
T 1wa5_C 493 QL-IELMPILATFLQTD---EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH---GSSPE 565 (960)
T ss_dssp HH-HHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT---CCCHH
T ss_pred HH-HHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc---cCCCC
Confidence 22 23688888888877 78999999999999876321 2333322 33455666666651 1 0 1
Q ss_pred H--HHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHc----C---CHHHHHHHHHHHHHhcC--CcccHHHHhhcCC
Q 010064 279 Q--AKQDALRALYNLSIF--PSNISFILETDLIRYLLEML----G---DMELSERILSILSNLVS--TPEGRKAISRVPD 345 (519)
Q Consensus 279 ~--~~~~A~~aL~nLs~~--~~n~~~l~~~g~v~~Lv~lL----~---~~~v~~~Al~~L~nLs~--~~e~r~~i~~~~g 345 (519)
+ ....+..+|..++.. .+..+. . ...++.|+..+ . ++.+...++.+|+.++. .++....+.+ .
T Consensus 566 ~~~~~e~l~~al~~vv~~~~~~~~p~-~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~ 641 (960)
T 1wa5_C 566 KLAENEFLMRSIFRVLQTSEDSIQPL-F-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--S 641 (960)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTTGGG-H-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--H
T ss_pred cccccHHHHHHHHHHHHHHHHhhhhH-H-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--H
Confidence 1 223455555554321 111111 1 12334444444 2 33466667777777765 3444444554 4
Q ss_pred cchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064 346 AFPILVDVLNWTDSPGCQEKASYVLMVMA 374 (519)
Q Consensus 346 ~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~ 374 (519)
.++.+..+|. .......+.+..++..|.
T Consensus 642 ~~p~~~~iL~-~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 642 MMPTFLTVFS-EDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHHHHH-TTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhhHhhHHHHHHHHHHHH
Confidence 7788888887 444455666666655554
No 93
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.32 E-value=1.2 Score=43.08 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=111.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh----cCCCHHHHHHHHHHHHHhcCCChh--hH
Q 010064 136 IVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML----DFQLADSQISSLYALLNLGIGNDL--NK 209 (519)
Q Consensus 136 ~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL----~s~~~~~~~~a~~aL~NLa~~~~~--nk 209 (519)
.+...|.+.+...+..|+..|......++ +..+. .+..++..+ -+.+..+...++.+|..+...-.+ .+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44555667788888889988888654442 23232 233333332 356888888888888877521000 00
Q ss_pred HHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 210 AAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL 288 (519)
Q Consensus 210 ~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL 288 (519)
-.-.+ .-.+|.|+.-+.++ ...+++.+-.++..+... ..-+...+.++.-+.+ .+...+..++..|
T Consensus 125 ~~~~ea~~~lP~LveKlGd~---k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ks----KN~R~R~e~l~~l 191 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEA---KDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKS----KNARQRSECLLVI 191 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCS---SHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGC----SCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHcc----CCHHHHHHHHHHH
Confidence 01111 12689999999887 788998887777665421 1123356777777777 6899999999999
Q ss_pred HHhcCCCccHHHHHhcCcH---HHHHHHcCCH--HHHHHHHHHHHHhc
Q 010064 289 YNLSIFPSNISFILETDLI---RYLLEMLGDM--ELSERILSILSNLV 331 (519)
Q Consensus 289 ~nLs~~~~n~~~l~~~g~v---~~Lv~lL~~~--~v~~~Al~~L~nLs 331 (519)
.++....... ...++ +.+..+++|. .++..|+.++..+-
T Consensus 192 ~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 192 EYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 8885432211 24478 9999999755 48999988887554
No 94
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.20 E-value=1.7 Score=41.62 Aligned_cols=174 Identities=15% Similarity=0.128 Sum_probs=122.3
Q ss_pred HHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHH
Q 010064 237 EAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKK-VSPQAKQDALRALYNLSIFPS--NISFILETDLIRYLLEM 313 (519)
Q Consensus 237 ~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~-~~~~~~~~A~~aL~nLs~~~~--n~~~l~~~g~v~~Lv~l 313 (519)
.+|.+.|-.++.+++.|..+.+....-.|...|...... .-...+..++..+..|...++ -+.+++++..||..+..
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 456666777899999999999998887888888763111 114588889999999986543 67888999999999999
Q ss_pred c--CCHHHHHHHHHHHHHhcCCcccHHHHhhcC-------CcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 010064 314 L--GDMELSERILSILSNLVSTPEGRKAISRVP-------DAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAM 384 (519)
Q Consensus 314 L--~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~-------g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i 384 (519)
+ ++.--+.-|..++..+-.++.+-.-+..+. .++..++..+....++.+-++.+.+-..|+.+ +..|+++
T Consensus 154 me~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~aL 232 (268)
T 2fv2_A 154 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREAL 232 (268)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHHH
Confidence 9 455567788888888877777666655422 24445555454467889999999999999987 5666666
Q ss_pred HH-------cCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064 385 IE-------AGIASALLELTLLGSTLAQKRASRILECL 415 (519)
Q Consensus 385 ~~-------~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l 415 (519)
.+ .|.+..+ ..+++..++--..++.++
T Consensus 233 ~~~LP~~Lrd~tf~~~----l~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 233 RQCLPDQLKDTTFAQV----LKDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHSCGGGTSSTTHHH----HTSCHHHHHHHHHHHHHS
T ss_pred HHhCcHHhhChHHHHH----HhcCHHHHHHHHHHHHhc
Confidence 53 2322222 245777776555555544
No 95
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.63 E-value=2.3 Score=40.04 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=104.5
Q ss_pred CChHHHHHHhhcCC---C----CCCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCCH--HHHHHHHHHHHH
Q 010064 260 GAVPFLVKTLKNSD---K----KVSPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGDM--ELSERILSILSN 329 (519)
Q Consensus 260 gai~~LV~lL~~~~---~----~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~~--~v~~~Al~~L~n 329 (519)
+++..|+.+|.... . ..+...+..++.+|..|..+......+++. .++..|...|.++ .++..++.+|.-
T Consensus 43 ~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~ 122 (233)
T 2f31_A 43 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA 122 (233)
T ss_dssp HHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 45566666554310 0 125677888999999998877766667665 6888888888544 477788888988
Q ss_pred hcCCcc--c-HHHHhh---------cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh------hHHHHHHcCcHH
Q 010064 330 LVSTPE--G-RKAISR---------VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG------DRQAMIEAGIAS 391 (519)
Q Consensus 330 Ls~~~e--~-r~~i~~---------~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~------~~~~i~~~G~i~ 391 (519)
++..++ + ...+.+ ...-+..+++.+....+.+.+..+...+..|...+++ .|..+...|..+
T Consensus 123 lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~ 202 (233)
T 2f31_A 123 LCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ 202 (233)
T ss_dssp HHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHH
T ss_pred HHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH
Confidence 887543 5 443322 1334566778777445667777777777777776543 245566789888
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 392 ALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 392 ~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
.+-.+-...++....+...--....+
T Consensus 203 il~~l~~~~~~~L~~Qi~~fe~~~~e 228 (233)
T 2f31_A 203 VLQELREIENEDMKVQLCVFDEQGDE 228 (233)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 88777777888877765554444333
No 96
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.49 E-value=5.5 Score=45.07 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHH
Q 010064 232 NPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLL 311 (519)
Q Consensus 232 ~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv 311 (519)
+...++.++.++..++..-.. .....++.++..+... ....+.++..++++|..++..-......+ ..+++.|+
T Consensus 462 ~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~l~ 535 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPLVL 535 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHHH
Confidence 677888888888888754221 0123455666655432 22478899999999999875322111222 37888888
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCcccHHHHhhc-CCcchhhhhhccCC-CCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcC
Q 010064 312 EMLGDMELSERILSILSNLVSTPEGRKAISRV-PDAFPILVDVLNWT-DSPGCQEKASYVLMVMAHKSY-GDRQAMIEAG 388 (519)
Q Consensus 312 ~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~-~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~G 388 (519)
..|.++.++..|+.+|.+++. +++..+... ...+..|..++... -+...+..+..+++.++...+ +.....+ ..
T Consensus 536 ~~l~~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~~ 612 (963)
T 2x19_B 536 HALGNPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-HS 612 (963)
T ss_dssp HHTTCGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-HH
T ss_pred HHhCCchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-HH
Confidence 888888899999999999985 233333210 12444455555522 256788888889998876432 3333322 22
Q ss_pred cHHHHHHHhh----c-CCHHHHHHHHHHHHHh
Q 010064 389 IASALLELTL----L-GSTLAQKRASRILECL 415 (519)
Q Consensus 389 ~i~~Ll~Ll~----~-gs~~~~~~A~~~L~~l 415 (519)
+++.+...+. . .++..+.....++.+|
T Consensus 613 l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 613 LISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4444444332 2 2566666555555555
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.48 E-value=2.6 Score=40.44 Aligned_cols=184 Identities=9% Similarity=0.039 Sum_probs=112.4
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC---Chhhhh-h-CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 218 VHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS---NKPIIG-S-SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292 (519)
Q Consensus 218 v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~---~k~~I~-~-~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs 292 (519)
+| |-+-|.+. +-..+..+.-.|..+..... ...... . ...++.+...+.. .+..++..++.+|..++
T Consensus 12 lp-l~e~l~sk---~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D----sN~~v~~~al~~l~~~~ 83 (278)
T 4ffb_C 12 LP-LEERLTYK---LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD----SNVVAQEQAIVALNSLI 83 (278)
T ss_dssp CC-HHHHTTCS---SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC----SSHHHHHHHHHHHHHHH
T ss_pred CC-HHHhcccC---cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHH
Confidence 44 55667777 77888888777665433211 111111 1 2345556667766 79999999999999887
Q ss_pred CCCc----cH--HHHHhcCcHHHHHHH-cCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHH
Q 010064 293 IFPS----NI--SFILETDLIRYLLEM-LGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQ 363 (519)
Q Consensus 293 ~~~~----n~--~~l~~~g~v~~Lv~l-L~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~q 363 (519)
..-. .. ....-..+++.|+.- |++. .++..++.+|..++........ ++..++..+. +.+|.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~-~Knpkv~ 156 (278)
T 4ffb_C 84 DAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFE-KKLPKLI 156 (278)
T ss_dssp TTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGG-CSCHHHH
T ss_pred HHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHh-ccCHHHH
Confidence 5321 11 122234567777764 6554 4777888777766542211111 2345666777 6799999
Q ss_pred HHHHHHHHHHhcC--Chh-hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 364 EKASYVLMVMAHK--SYG-DRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 364 e~A~~~L~nL~~~--~~~-~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
..++..|..+... ... .....+ ..+++.+..++.+.++.+|..|..++.-+-.
T Consensus 157 ~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 157 AAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 9988888776542 111 111111 1345567788899999999999999887764
No 98
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.33 E-value=0.14 Score=48.98 Aligned_cols=45 Identities=18% Similarity=-0.019 Sum_probs=30.1
Q ss_pred hhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064 348 PILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL 412 (519)
Q Consensus 348 ~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L 412 (519)
+.|..++. ..++.++..++..+. .+.|..| .+.+..++..|...|
T Consensus 197 ~~L~~Ll~-D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 DDLLELLH-DPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGG-CSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHc-CCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 45666676 567777777666531 3556666 888888888876554
No 99
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=91.87 E-value=3.3 Score=40.79 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH----HhhcC-CCHHHHHHHHHHHHHhcCCChhh
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA----GMLDF-QLADSQISSLYALLNLGIGNDLN 208 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv----~lL~s-~~~~~~~~a~~aL~NLa~~~~~n 208 (519)
+..+.+.+ .=..+.+.-++..+|-+.. ++.....+...+.-..++ ..+.. ..+..+..+++++.|+... +..
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g 181 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAG 181 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chh
Confidence 34444444 2223345556677776664 445555555433323333 33432 4567799999999999994 878
Q ss_pred HHHHHhc--CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC---CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHH
Q 010064 209 KAAIVKA--GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD---SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQD 283 (519)
Q Consensus 209 k~~iv~a--G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~---~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~ 283 (519)
+..+... -+++.+...+.++ +..++.+++..++|++... ...+. ....+..+..++... .+.++..-
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~---nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~---~d~EalyR 253 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGS---NKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVV---QDLEATFR 253 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSC---CHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTC---CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhcc---CCHHHHHH
Confidence 8777753 3555666565555 7899999999999988531 11111 112445555666553 68899999
Q ss_pred HHHHHHHhcCCCccHHHHH
Q 010064 284 ALRALYNLSIFPSNISFIL 302 (519)
Q Consensus 284 A~~aL~nLs~~~~n~~~l~ 302 (519)
++.||.+|...+.....+.
T Consensus 254 ~LvALGtL~~~~~~~~~la 272 (304)
T 3ebb_A 254 LLVALGTLISDDSNAVQLA 272 (304)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCChhHHHHH
Confidence 9999999987654444333
No 100
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=91.22 E-value=3.4 Score=41.34 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=88.6
Q ss_pred HHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCC
Q 010064 196 YALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKK 275 (519)
Q Consensus 196 ~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~ 275 (519)
--|.||..++...-.-+++..+|..+..++..+ +.++..+....|+..|...... .+--...+|++++.+.-.
T Consensus 264 FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYp---N~~l~RaG~KLLLQVSDaksL~-~t~L~e~LPFi~~~i~~h--- 336 (619)
T 3c2g_A 264 FDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYP---NNDLIRAGCKLLLQVSDAKALA-KTPLENILPFLLRLIEIH--- 336 (619)
T ss_dssp HHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS---CHHHHHHHHHHHHHHTTCGGGG-TSCCTTHHHHHHHHHHHC---
T ss_pred HHHHHHHhcccccccceeecccceeEEEEeecC---CcHHHHhhhheeeeecchHHHh-hccccccchHHHHHhccC---
Confidence 347788887566677899999999999999998 8999998888888887543211 111256799999999864
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHH-HHhcCcHHHHHHHc
Q 010064 276 VSPQAKQDALRALYNLSIFPSNISF-ILETDLIRYLLEML 314 (519)
Q Consensus 276 ~~~~~~~~A~~aL~nLs~~~~n~~~-l~~~g~v~~Lv~lL 314 (519)
++.++.-.....|.|...+...... -+..|+++-|...+
T Consensus 337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 8999999999999999988875444 46789999998877
No 101
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.13 E-value=9.1 Score=43.39 Aligned_cols=257 Identities=11% Similarity=0.024 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh--cCcHHHH
Q 010064 144 ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK--AGAVHKM 221 (519)
Q Consensus 144 ~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~--aG~v~~L 221 (519)
.++.++..++++|..++.--......+ ..+++.|+..|+ +.++..|++++.+++.. .+..+.. ..++..|
T Consensus 518 ~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~---~~v~~~A~~al~~l~~~---~~~~l~p~~~~ll~~l 589 (971)
T 2x1g_F 518 LNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN---SSMSAQATLGLKELCRD---CQLQLKPYADPLLNAC 589 (971)
T ss_dssp SCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH---SSCHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC---hHHHHHHHHHHHHHHHH---HHHhccccHHHHHHHH
Confidence 377889999999998774321111222 125667777773 67899999999999954 3333432 2466777
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHhccC-C-CChhhhhhCCChHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhcCC---
Q 010064 222 LKLIESPVAPNPSVSEAIVANFLGLSAL-D-SNKPIIGSSGAVPFLVKTLKNSDKKV--SPQAKQDALRALYNLSIF--- 294 (519)
Q Consensus 222 v~lL~s~~~~~~~~~~~a~~aL~~LS~~-~-~~k~~I~~~gai~~LV~lL~~~~~~~--~~~~~~~A~~aL~nLs~~--- 294 (519)
..++..+.. +...+..+..++..+... + +.+.... ...+++++..|....... +.+.+.....+|..|+..
T Consensus 590 ~~~l~~~~~-~~~~~~~~~~ai~~i~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~ 667 (971)
T 2x1g_F 590 HASLNTGRM-KNSDSVRLMFSIGKLMSLLRPEEIPKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSS 667 (971)
T ss_dssp HHHHHSTTS-CHHHHHHHHHHHHHHHHTSCTTHHHHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCC-ChHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhh
Confidence 777776421 466777666666665432 1 2222221 223455554443210001 333344444444444311
Q ss_pred --C---cc--------HHHHHhcCcHHHHHHHc----CCHHHHHHHHHHHHHhcCC-cccHHHHhhcCCcchhhhhhccC
Q 010064 295 --P---SN--------ISFILETDLIRYLLEML----GDMELSERILSILSNLVST-PEGRKAISRVPDAFPILVDVLNW 356 (519)
Q Consensus 295 --~---~n--------~~~l~~~g~v~~Lv~lL----~~~~v~~~Al~~L~nLs~~-~e~r~~i~~~~g~i~~Lv~lL~~ 356 (519)
. ++ ...-+...+++.+..++ .+.++.+.++.+++.++.. .+.-..+.. ..++.|+..+..
T Consensus 668 l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~--~~~~~l~~~~~~ 745 (971)
T 2x1g_F 668 LNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQ--DLCLFIVASFQT 745 (971)
T ss_dssp HTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHH--HHHHHHHHHCC-
T ss_pred cCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHH--HHHHHHHHHHhc
Confidence 0 00 00112235666666655 3567999999999998752 111111111 233444444442
Q ss_pred CCCHHHHHHHHHHHHHHhcC--Ch-hhHHHHHH--cCcHHHHHHHhhc-------CCHHHHHHHHHHHHHhh
Q 010064 357 TDSPGCQEKASYVLMVMAHK--SY-GDRQAMIE--AGIASALLELTLL-------GSTLAQKRASRILECLR 416 (519)
Q Consensus 357 s~~~~~qe~A~~~L~nL~~~--~~-~~~~~i~~--~G~i~~Ll~Ll~~-------gs~~~~~~A~~~L~~l~ 416 (519)
+.. ..+++++..++.. .. .....+.+ ...+...+.++.. ..|++++..-.++..+.
T Consensus 746 ~~~----~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l 813 (971)
T 2x1g_F 746 RCC----APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQII 813 (971)
T ss_dssp -CC----HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHH
T ss_pred CCc----hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHH
Confidence 211 2366777777663 21 12222222 1223333444433 25667666655555544
No 102
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=90.79 E-value=5.1 Score=40.74 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcc--c-HHHHhh-------
Q 010064 276 VSPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGD--MELSERILSILSNLVSTPE--G-RKAISR------- 342 (519)
Q Consensus 276 ~~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e--~-r~~i~~------- 342 (519)
.+...+..++.||..|..+......++.. ..+..|...|.+ +.++..++.+|.-+|..++ + ...+.+
T Consensus 132 ~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 132 YDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 211 (383)
T ss_dssp -CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence 35678889999999998877766666665 788989888864 3578889999988888543 3 443332
Q ss_pred --cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhh------HHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010064 343 --VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGD------RQAMIEAGIASALLELTLLGSTLAQKRASRILEC 414 (519)
Q Consensus 343 --~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~------~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~ 414 (519)
...-+..+++.|....+.+.+..+...+..+...+++. |..+...|..+.+-.+-...++....+...--..
T Consensus 212 ~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi~~fe~~ 291 (383)
T 3eg5_B 212 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQ 291 (383)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 13447778888884456777777777777777765432 4556678988887776666677666654444444
Q ss_pred hhhc
Q 010064 415 LRVD 418 (519)
Q Consensus 415 l~~~ 418 (519)
..+|
T Consensus 292 ~~eD 295 (383)
T 3eg5_B 292 GDED 295 (383)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4333
No 103
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.03 E-value=9.4 Score=43.12 Aligned_cols=217 Identities=12% Similarity=0.094 Sum_probs=121.9
Q ss_pred cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhh---cCCCCCCHHHHHHHHHHHHHhccC-CCChhhhhhC
Q 010064 184 DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLI---ESPVAPNPSVSEAIVANFLGLSAL-DSNKPIIGSS 259 (519)
Q Consensus 184 ~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL---~s~~~~~~~~~~~a~~aL~~LS~~-~~~k~~I~~~ 259 (519)
.+.+...++.++++++.++.+..... ...++.++..+ .++ ++.++..+++++...+.. ..... . -.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~---~~~vr~~~~~~l~~~~~~l~~~~~-~-l~ 528 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS---NVQLADTVMFTIGALSEWLADHPV-M-IN 528 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC---SHHHHHHHHHHHHHTHHHHHHCHH-H-HT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC---cHHHHHHHHHHHHHHHHHHHhCHH-H-HH
Confidence 45677889999999999997643311 12344444433 223 678898888888776632 11111 1 24
Q ss_pred CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHH--hcCcHHHHHHHcC----CHHHHHHHHHHHHHhcC-
Q 010064 260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFIL--ETDLIRYLLEMLG----DMELSERILSILSNLVS- 332 (519)
Q Consensus 260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~--~~g~v~~Lv~lL~----~~~v~~~Al~~L~nLs~- 332 (519)
..++.|+..|. ++.++..|+.+|.+|+.... ..+. -...+..|..++. +.+.+..++.+++.++.
T Consensus 529 ~vl~~l~~~l~------~~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 529 SVLPLVLHALG------NPELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp TTHHHHHHHTT------CGGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC------CchHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 67888887773 36789999999999985322 1111 0123344444443 34577777888888775
Q ss_pred Cc-ccHHHHhhcCCcchhhhhhc----cCCCCHHHHHH---HHHHHHHHhcC--C--h-h--------------h--HHH
Q 010064 333 TP-EGRKAISRVPDAFPILVDVL----NWTDSPGCQEK---ASYVLMVMAHK--S--Y-G--------------D--RQA 383 (519)
Q Consensus 333 ~~-e~r~~i~~~~g~i~~Lv~lL----~~s~~~~~qe~---A~~~L~nL~~~--~--~-~--------------~--~~~ 383 (519)
.+ +......+ ..++.+.+.+ ....++..+.. ...+|+.+... . + . . --.
T Consensus 601 ~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (963)
T 2x19_B 601 LQVEEILKNLH--SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVV 678 (963)
T ss_dssp SCHHHHHHHHH--HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHH
T ss_pred CCHHHHHHHHH--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchH
Confidence 32 44444443 2454454443 22224544443 33334444321 0 0 0 0 011
Q ss_pred HHHcCcHHHHHHHhh--cCCHHHHHHHHHHHHHhhhcCC
Q 010064 384 MIEAGIASALLELTL--LGSTLAQKRASRILECLRVDKG 420 (519)
Q Consensus 384 i~~~G~i~~Ll~Ll~--~gs~~~~~~A~~~L~~l~~~~~ 420 (519)
-....++|.+..++. ..++.+.+.++.++..+...-+
T Consensus 679 ~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~ 717 (963)
T 2x19_B 679 VVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL 717 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence 123446677666665 3467888999999988775433
No 104
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.78 E-value=1.4 Score=50.85 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC-----CHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcc
Q 010064 276 VSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG-----DME--LSERILSILSNLVSTPEGRKAISRVPDAF 347 (519)
Q Consensus 276 ~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~-----~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i 347 (519)
.+-+.+..+++++..++.... ....-.-..+++.|+.++. |+. ++..++++|+..+..-........ ..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHH
Confidence 578899999999999997754 2222222356677777774 233 445677888876652222222333 266
Q ss_pred hhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH----------cCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064 348 PILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE----------AGIASALLELTLLGSTLAQKRASRILECLRV 417 (519)
Q Consensus 348 ~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~----------~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~ 417 (519)
..|++.|. .+++.+++.||+++.+||. +++..+.. ..++..+...+..-.+.....+..++..+..
T Consensus 543 ~~L~~~l~-~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 543 LKLFEFMH-ETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhh-cCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66777776 4578999999999999995 34444432 1223333444444566667777777777775
Q ss_pred c
Q 010064 418 D 418 (519)
Q Consensus 418 ~ 418 (519)
.
T Consensus 619 ~ 619 (1023)
T 4hat_C 619 E 619 (1023)
T ss_dssp T
T ss_pred h
Confidence 4
No 105
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.74 E-value=6.6 Score=44.55 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCC-CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHH
Q 010064 232 NPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSD-KKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYL 310 (519)
Q Consensus 232 ~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~-~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~L 310 (519)
+...+++++.++..++....... ...++.++.++.... ....+.++..++++|..++..-......+ ..+++.|
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~l 551 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINLL 551 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHH
Confidence 45678888888888764322111 234566666553320 01378899999999998875321111100 1345556
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhc-CCcchhhhhhccCC-CCHHHHHHHHHHHHHHhcC
Q 010064 311 LEMLGDMELSERILSILSNLVSTPEGRKAISRV-PDAFPILVDVLNWT-DSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 311 v~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~-~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~nL~~~ 376 (519)
+..| ++.++..|+.+|.+|+. +++..+... +..+..|.+++... -+...+..+..+++.++..
T Consensus 552 ~~~l-~~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 552 VRGL-NSSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHH-HSSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHh-ChHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 6656 35689999999999994 344444321 23556666777632 2467888888888888764
No 106
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.96 E-value=5.8 Score=40.33 Aligned_cols=142 Identities=17% Similarity=0.161 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcc--c-HHHHhh--------
Q 010064 277 SPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGDM--ELSERILSILSNLVSTPE--G-RKAISR-------- 342 (519)
Q Consensus 277 ~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e--~-r~~i~~-------- 342 (519)
+......++.||..|..+......++.. .++..|...|.++ .++..++.+|..+|..++ + ...+.+
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 5678889999999998887766666665 7888888888543 477788888888887443 5 333321
Q ss_pred -cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh------hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064 343 -VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG------DRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415 (519)
Q Consensus 343 -~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~------~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l 415 (519)
...-+..|++.+..+.+.+.+..+...+..|...+++ .|..+...|..+.|-.+-...++....+...--...
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~~fe~~~ 230 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQG 230 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHHHHHHHHHH
Confidence 1334566888787556677777777777777776553 255567789888877777677887776655444443
Q ss_pred hhc
Q 010064 416 RVD 418 (519)
Q Consensus 416 ~~~ 418 (519)
.+|
T Consensus 231 ~eD 233 (386)
T 2bnx_A 231 DED 233 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 107
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=87.52 E-value=8.4 Score=38.25 Aligned_cols=197 Identities=15% Similarity=0.093 Sum_probs=139.0
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH----HHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064 172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK----AAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGL 246 (519)
Q Consensus 172 ~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk----~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L 246 (519)
..+.+..|+..|..=+-+.+..++.+..++.......+ .-+.. ..++..|+.--..+ ++.-.+-..|...
T Consensus 76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~-----diAl~~G~mLRec 150 (341)
T 1upk_A 76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESP-----EIALNCGIMLREC 150 (341)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGST-----TTHHHHHHHHHHH
T ss_pred HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccc-----hhHhHHHHHHHHH
Confidence 44678889999988889999999999999887644322 12222 24555555555444 3333444455555
Q ss_pred ccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC-CccHHHHHhc---CcHHHHHHHcCCHH--HH
Q 010064 247 SALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFILET---DLIRYLLEMLGDME--LS 320 (519)
Q Consensus 247 S~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~l~~~---g~v~~Lv~lL~~~~--v~ 320 (519)
..++.....|..++.+..+.+.+.. .+.++..+|..++.-|-.. ......++.. ..+...-.+|.++. ++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~----~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk 226 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEM----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK 226 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTC----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcC----CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence 5565556666677778888888887 7999999999999988654 3344445544 35666677787776 77
Q ss_pred HHHHHHHHHhcCCcccHHHHh---hcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh
Q 010064 321 ERILSILSNLVSTPEGRKAIS---RVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY 378 (519)
Q Consensus 321 ~~Al~~L~nLs~~~e~r~~i~---~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~ 378 (519)
..++..|+.|-.+..+...+. +...-+..++.+|. +.+..+|-+|..+.-...+.+.
T Consensus 227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~-d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLR-DKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhc-CchhchhhhhhhheeeeeeCCC
Confidence 899999999998776666543 33566778888898 6789999999888877777644
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=86.44 E-value=7.3 Score=38.70 Aligned_cols=192 Identities=15% Similarity=0.147 Sum_probs=131.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhH----HHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhh
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETR----VTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLN 208 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r----~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~n 208 (519)
+..|+..|..=+.+.|..++....++.+.....+ ..+.. --+.|..+++. +++++-..+-..|+.+..+ +..
T Consensus 80 l~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRecir~-e~l 156 (341)
T 1upk_A 80 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECIRH-EPL 156 (341)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS-HHH
T ss_pred HHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHHHh-HHH
Confidence 6777777777788888888888888877653322 22222 12223233332 4455556677778887774 888
Q ss_pred HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCChhhhhh---CCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064 209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSNKPIIGS---SGAVPFLVKTLKNSDKKVSPQAKQDA 284 (519)
Q Consensus 209 k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~k~~I~~---~gai~~LV~lL~~~~~~~~~~~~~~A 284 (519)
...++..+.+-.+.+.++.+ +=++...|..++..|-.. ......+.. .-.....-++|.+ ++.-+++++
T Consensus 157 a~~iL~~~~f~~fF~yv~~~---~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S----~NYVTkRQS 229 (341)
T 1upk_A 157 AKIILWSEQFYDFFRYVEMS---TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS----ENYVTKRQS 229 (341)
T ss_dssp HHHHHHSGGGGHHHHHTTCS---SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC----SSHHHHHHH
T ss_pred HHHHhccHHHHHHHHHhcCC---CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC----CcchhHHHH
Confidence 88888888899999999998 889998888888776433 111111111 2345556677777 799999999
Q ss_pred HHHHHHhcCCCccHHHHH----hcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcc
Q 010064 285 LRALYNLSIFPSNISFIL----ETDLIRYLLEMLGDM--ELSERILSILSNLVSTPE 335 (519)
Q Consensus 285 ~~aL~nLs~~~~n~~~l~----~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e 335 (519)
+..|..|..+..|...+. +..-+..++.+|.|. .++.+|..+..--+++|.
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 999999998877655543 335677778888654 589999988877666554
No 109
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=85.19 E-value=3.2 Score=44.30 Aligned_cols=181 Identities=19% Similarity=0.218 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhc
Q 010064 147 EQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIE 226 (519)
Q Consensus 147 ~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~ 226 (519)
.+|+.|+.+|..+ ..-+.- ..++..|+..+..+.-+++..++-.|..+ . +--.. -.++++.++.-|+
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~--DLL~~---Ld~Vv~aVL~GL~ 309 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K--EFVED---KDGLCRKLVSLLS 309 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G--GGCCC---HHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H--HHHHH---HHHHHHHHHhhcC
Confidence 5777777777777 443221 34555666666778899999999999998 1 11111 2467888888899
Q ss_pred CCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHH----hhcC-CCCCCHHHHHHHHHHHHHhcCCCccHHHH
Q 010064 227 SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKT----LKNS-DKKVSPQAKQDALRALYNLSIFPSNISFI 301 (519)
Q Consensus 227 s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~l----L~~~-~~~~~~~~~~~A~~aL~nLs~~~~n~~~l 301 (519)
+. +.+++..|+.+|.-++ . ...++.|+.+ |.+. +-+.+.....+.+.+|+..-.....
T Consensus 310 D~---DDDVRAVAAetLiPIA-~---------p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~---- 372 (800)
T 3oc3_A 310 SP---DEDIKLLSAELLCHFP-I---------TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI---- 372 (800)
T ss_dssp CS---SHHHHHHHHHHHTTSC-C---------SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC----
T ss_pred Cc---ccHHHHHHHHHhhhhc-c---------hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc----
Confidence 88 8999999999998887 2 2334444443 3332 1123444555555555555421111
Q ss_pred HhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhh-hccCCCCHHHHHHHHHHH
Q 010064 302 LETDLIRYLLEMLGD--MELSERILSILSNLVSTPEGRKAISRVPDAFPILVD-VLNWTDSPGCQEKASYVL 370 (519)
Q Consensus 302 ~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~-lL~~s~~~~~qe~A~~~L 370 (519)
....||.|...|.. ..++..++.+|..+. . ..++..+.+ +|- ..++++++.+..+.
T Consensus 373 -dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~-~~~LRLIFQNILL-E~neeIl~lS~~VW 431 (800)
T 3oc3_A 373 -PPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------E-ESIDFLVAEVVLI-EEKDEIREMAIKLL 431 (800)
T ss_dssp -CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------C-HHHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred -ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------h-hhHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 12677777777754 569999999987776 1 223444444 333 45788887776555
No 110
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=83.60 E-value=31 Score=39.47 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCccH-HHHHhcCcHHHHHHHcC-----CHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcc
Q 010064 276 VSPQAKQDALRALYNLSIFPSNI-SFILETDLIRYLLEMLG-----DME--LSERILSILSNLVSTPEGRKAISRVPDAF 347 (519)
Q Consensus 276 ~~~~~~~~A~~aL~nLs~~~~n~-~~l~~~g~v~~Lv~lL~-----~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i 347 (519)
.+...+..+++++..++...... ..-.-..+++.|+.+.. ++. ++..++++++..+..-........ .++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHH
Confidence 57788999999999998643211 11111224444544432 122 344588888877652111123333 367
Q ss_pred hhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 348 PILVDVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 348 ~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
+.|++.|. +.++.++..|++++.++|..
T Consensus 543 ~~ll~~l~-~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 543 LKLFEFMH-ETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHTT-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence 77888887 56899999999999999963
No 111
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=83.41 E-value=25 Score=40.61 Aligned_cols=219 Identities=16% Similarity=0.073 Sum_probs=135.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcCC----Ch
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIG----ND 206 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~NLa~~----~~ 206 (519)
..+..++..+.+++.+.|..|-..|..+-+ +++.. ..+..+|. +.++.++.-|+.+|.+.... -+
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~aw---------~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDAW---------TRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCHH---------HHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchHH---------HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 347788888888888888888888876653 33433 23334443 46889999999999998752 12
Q ss_pred hhHHHHHhcCcHHHHHHhhcCCC--CCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHH
Q 010064 207 LNKAAIVKAGAVHKMLKLIESPV--APNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQ 282 (519)
Q Consensus 207 ~nk~~iv~aG~v~~Lv~lL~s~~--~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~ 282 (519)
.....-++..++..+.....++. ..++.+....+.++..+... ++. ....++.|+.++.. +.....
T Consensus 98 ~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~-----~~~~~~ 167 (1073)
T 3gjx_A 98 RNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT-----SESLCQ 167 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH-----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC-----CHHHHH
Confidence 33334445557777776543320 00345555555555555432 222 35578888888865 455666
Q ss_pred HHHHHHHHhcCC--C-------ccH----HHHHhcCcHHHHHHHc-------CCHHHHHHHHHHHHHhcCCcccHHHHhh
Q 010064 283 DALRALYNLSIF--P-------SNI----SFILETDLIRYLLEML-------GDMELSERILSILSNLVSTPEGRKAISR 342 (519)
Q Consensus 283 ~A~~aL~nLs~~--~-------~n~----~~l~~~g~v~~Lv~lL-------~~~~v~~~Al~~L~nLs~~~e~r~~i~~ 342 (519)
..+..|..|+.. . ..+ ...+.. -++.++.++ .++++...++.+|....+.-+ -..++.
T Consensus 168 ~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~-~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~ 245 (1073)
T 3gjx_A 168 NNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN-EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFE 245 (1073)
T ss_dssp HHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHS
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhcc
Confidence 777888777643 1 011 111212 144444443 355688889999999988543 234556
Q ss_pred cCCcchhh-hhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 343 VPDAFPIL-VDVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 343 ~~g~i~~L-v~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
...++.| ..+|. ++..+..|+.+|+.+...
T Consensus 246 -~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 246 -TKLISTLIYKFLN---VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp -SSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHS
T ss_pred -chHHHHHHHHhcC---ChHHHHHHHHHHHHHHhc
Confidence 5777777 46665 588999999999998864
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=82.95 E-value=12 Score=38.92 Aligned_cols=129 Identities=13% Similarity=0.180 Sum_probs=88.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
+..++.. ..++...|..|+..|....+.-++..+. ++..++.+++.++..+|..|.+.|-.+|.+ ++-..
T Consensus 31 y~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-- 100 (507)
T 3u0r_A 31 YQVILDG-VKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-- 100 (507)
T ss_dssp HHHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH--
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh--
Confidence 4445553 4568999999999999999888887775 578999999999999999999999999995 43222
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY 289 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~ 289 (519)
++..|+++|+.. ++.-...+-.+|..|-..++ .+.+..|..-+.. ++..++..++..|+
T Consensus 101 ---iaDvL~QlLqtd---d~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~----~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 101 ---VADILTQLLQTD---DSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQ----GEDIVRERAIKFLS 159 (507)
T ss_dssp ---HHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHH----SCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcc---chHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcc----cchHHHHHHHHHHH
Confidence 568899999987 55555555455555433221 2233344443333 34566666665553
No 113
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=81.98 E-value=25 Score=34.38 Aligned_cols=151 Identities=9% Similarity=0.037 Sum_probs=96.2
Q ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 010064 134 LKIVVKDLQSE------SEEQRREAASKVRSLAKENSETRVTLAM--LGAIPPLAGMLDFQLADSQISSLYALLNLGIGN 205 (519)
Q Consensus 134 l~~Lv~~L~s~------~~~~~~~Aa~~L~~La~~~~~~r~~l~~--~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~ 205 (519)
+..+..+++++ +.+.-..|+..|-.++ +|-.+-..++. -..+..|+ +.....+.+++.++++|.....+|
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElS-HDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFA-HDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGT-TSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhh-hhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence 33444445554 3344567888888888 45566666664 23344444 334567789999999999999999
Q ss_pred hhhHHHHHhc--CcHHHHHHhhc----CCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHH
Q 010064 206 DLNKAAIVKA--GAVHKMLKLIE----SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQ 279 (519)
Q Consensus 206 ~~nk~~iv~a--G~v~~Lv~lL~----s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~ 279 (519)
++....|.+. ..+..++.-|. .+......+...-+++|-.|..++. .+ ....+..|++++... ..+.+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~--~~d~~ 175 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERN--NKDKQ 175 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHT--TTCHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccC--CCCHH
Confidence 9988877764 45555554332 2211134566677888888887752 12 244668888887651 23888
Q ss_pred HHHHHHHHHHHhc
Q 010064 280 AKQDALRALYNLS 292 (519)
Q Consensus 280 ~~~~A~~aL~nLs 292 (519)
++..++..+..+-
T Consensus 176 ~k~Kvl~li~d~f 188 (315)
T 3qml_C 176 LQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8888888776554
No 114
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=81.88 E-value=35 Score=39.01 Aligned_cols=271 Identities=11% Similarity=0.040 Sum_probs=144.8
Q ss_pred HHHHHHHHhcCC---CHHHHHHHHHHHHHHhcc-Chh----hHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcC
Q 010064 133 ELKIVVKDLQSE---SEEQRREAASKVRSLAKE-NSE----TRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGI 203 (519)
Q Consensus 133 ~l~~Lv~~L~s~---~~~~~~~Aa~~L~~La~~-~~~----~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~NLa~ 203 (519)
........|... +...|.-|+..|.+..+. +++ .+..+. .-++..+...-. .+..-++...+.+|..++.
T Consensus 41 aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr-~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~ 119 (980)
T 3ibv_A 41 GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR-DSVWSYIKELSFLDEPAYISNAVQHLLTLLFL 119 (980)
T ss_dssp HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH-HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence 355566666543 678899999988875542 223 343332 223333333110 1345677777777777775
Q ss_pred CC-hhhHHHHHhcCcHHHHHHhhcCCCCCCH-HHHHHHHHHHHHhcc---CCC-C------------hhhhhhCC---Ch
Q 010064 204 GN-DLNKAAIVKAGAVHKMLKLIESPVAPNP-SVSEAIVANFLGLSA---LDS-N------------KPIIGSSG---AV 262 (519)
Q Consensus 204 ~~-~~nk~~iv~aG~v~~Lv~lL~s~~~~~~-~~~~~a~~aL~~LS~---~~~-~------------k~~I~~~g---ai 262 (519)
.. +.. =.+.++-|+.++.++ +. ........+|..++. +.. . |..+.+.. .+
T Consensus 120 ~~~p~~-----Wp~~i~~l~~~~~~~---~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~ 191 (980)
T 3ibv_A 120 QLYPSN-----WNDFFASLQGVIAAS---SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIV 191 (980)
T ss_dssp HHTTTT-----CTTHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HhCccc-----CchHHHHHHHHhcCC---ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHH
Confidence 31 011 024677777777654 23 233344444442221 100 0 22222210 13
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcC---CcccHHH
Q 010064 263 PFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVS---TPEGRKA 339 (519)
Q Consensus 263 ~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~---~~e~r~~ 339 (519)
+....+|.......++.++..++.+|......-+ ...+++...++.+..+|.+++++..|+.+|..+.. .++.+..
T Consensus 192 ~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~ 270 (980)
T 3ibv_A 192 SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLN 270 (980)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHH
Confidence 3333334220001477888899999988876533 34556678899999999999999999999999887 4445555
Q ss_pred HhhcCCcchhhhhhccC-CCCHHHHHHHHHHHHHHhc-------CC----hhhHHHHHH--cCcHHHHHHHhhcCCHHHH
Q 010064 340 ISRVPDAFPILVDVLNW-TDSPGCQEKASYVLMVMAH-------KS----YGDRQAMIE--AGIASALLELTLLGSTLAQ 405 (519)
Q Consensus 340 i~~~~g~i~~Lv~lL~~-s~~~~~qe~A~~~L~nL~~-------~~----~~~~~~i~~--~G~i~~Ll~Ll~~gs~~~~ 405 (519)
++..- .+..++..+.. .++.+..+.-+.++..++. .+ .+.+..... .+.++.++..+.+++..+-
T Consensus 271 li~~l-~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs 349 (980)
T 3ibv_A 271 LLNIL-NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETS 349 (980)
T ss_dssp HHHHH-HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHH
T ss_pred HHHHH-hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHH
Confidence 54421 11112222221 3456655544444433321 11 111222211 3688999999988887776
Q ss_pred HHHHHHHHH
Q 010064 406 KRASRILEC 414 (519)
Q Consensus 406 ~~A~~~L~~ 414 (519)
..+...+..
T Consensus 350 ~~t~~Fw~~ 358 (980)
T 3ibv_A 350 TAVFPFLSD 358 (980)
T ss_dssp HTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 655444443
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=80.95 E-value=21 Score=41.19 Aligned_cols=171 Identities=9% Similarity=0.037 Sum_probs=93.8
Q ss_pred HHHHHHhhcC----CCHHHHHHHHHHHHHhcC----CChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064 176 IPPLAGMLDF----QLADSQISSLYALLNLGI----GNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS 247 (519)
Q Consensus 176 i~~Lv~lL~s----~~~~~~~~a~~aL~NLa~----~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS 247 (519)
+..+..++.+ .++.++..+..++.+|.. .++.+...++. -+...|.+.+... +..-...++.+|-|+.
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~---~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRA---KEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTT---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcC---ChHHHHHHHHHhhccC
Confidence 3445555554 456666667776666653 11111111110 0223333444555 5555666677777775
Q ss_pred cCCCChhhhhhCCChHHHHHHhhcC---CCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc----CCHHHH
Q 010064 248 ALDSNKPIIGSSGAVPFLVKTLKNS---DKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML----GDMELS 320 (519)
Q Consensus 248 ~~~~~k~~I~~~gai~~LV~lL~~~---~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL----~~~~v~ 320 (519)
.. ..++.|..++... .......++..|++||.+++..... . +-+.|+.+. .+++++
T Consensus 469 ~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~---~----v~~il~~i~~n~~e~~EvR 531 (1056)
T 1lsh_A 469 QP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR---K----VQEIVLPIFLNVAIKSELR 531 (1056)
T ss_dssp CG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH---H----HHHHHHHHHHCTTSCHHHH
T ss_pred Ch----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH---H----HHHHHHHHhcCCCCChHHH
Confidence 31 2466676666421 0123567888999999999854321 1 112344444 356688
Q ss_pred HHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064 321 ERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS 377 (519)
Q Consensus 321 ~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~ 377 (519)
..|+.+|.. ..|. ...+..+...+.+..+.++.......|-+|+...
T Consensus 532 iaA~~~Lm~--t~P~--------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 532 IRSCIVFFE--SKPS--------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHH--TCCC--------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHH--HCcC--------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 777777753 2221 1244466677775567777777777777877754
No 116
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=80.38 E-value=52 Score=33.17 Aligned_cols=153 Identities=13% Similarity=0.137 Sum_probs=95.8
Q ss_pred HHHHHhcCCCHHHH-HHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhc
Q 010064 136 IVVKDLQSESEEQR-REAASKVRS-LAKENSETRVTLAMLGAIPPLAGMLDF-----------QLADSQISSLYALLNLG 202 (519)
Q Consensus 136 ~Lv~~L~s~~~~~~-~~Aa~~L~~-La~~~~~~r~~l~~~G~i~~Lv~lL~s-----------~~~~~~~~a~~aL~NLa 202 (519)
..++.|.++....+ ...+..|+. |......--..|. .+|+..|+.+|.. .+...+..++++|..|.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 45565655533322 334555655 3333333434555 6788999988842 24578888999999998
Q ss_pred CCChhhHHHHHhc-CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--C-hhhhh----------hCCChHHHHHH
Q 010064 203 IGNDLNKAAIVKA-GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--N-KPIIG----------SSGAVPFLVKT 268 (519)
Q Consensus 203 ~~~~~nk~~iv~a-G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~-k~~I~----------~~gai~~LV~l 268 (519)
. +......+++. ..+..|+..+.++ ++.++..++-.|..++..++ + ...+. +..-...+|..
T Consensus 149 N-~~~G~~~vl~~~~~i~~l~~~L~s~---~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~ 224 (383)
T 3eg5_B 149 N-NKFGIKTMLETEEGILLLVRAMDPA---VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG 224 (383)
T ss_dssp S-SHHHHHHHHTCSSHHHHHHHTCCTT---SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHT
T ss_pred c-chhhHHHHHcChHHHHHHHHHhCCC---chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 7 47677777764 7899999999888 88888888777766665543 3 33322 23445667777
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 010064 269 LKNSDKKVSPQAKQDALRALYNLSIFPS 296 (519)
Q Consensus 269 L~~~~~~~~~~~~~~A~~aL~nLs~~~~ 296 (519)
|.+. .+.+.+..++..+-.|...++
T Consensus 225 L~~~---~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 225 LKSG---TSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TSTT---SCHHHHHHHHHHHHHHHTTCC
T ss_pred HHcc---CcHHHHHHHHHHHHHHHcCCC
Confidence 7653 566666655555555554443
No 117
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=79.57 E-value=6.8 Score=37.70 Aligned_cols=97 Identities=11% Similarity=0.137 Sum_probs=67.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
++.|+..+.......|..+-..++.++.-.+. ..+++.++.-+++.+...++.++..|..+-......
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----- 201 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----- 201 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----
Confidence 66777777666666666665656555532111 224677888889999999999999888886432221
Q ss_pred hcCcH---HHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064 214 KAGAV---HKMLKLIESPVAPNPSVSEAIVANFLG 245 (519)
Q Consensus 214 ~aG~v---~~Lv~lL~s~~~~~~~~~~~a~~aL~~ 245 (519)
...++ |.+..++.+. |..++.+|..++..
T Consensus 202 ~~~~l~~~~~ia~ll~D~---d~~VR~aAl~~lve 233 (266)
T 2of3_A 202 PLKSLSVEKTVAPFVGDK---DVNVRNAAINVLVA 233 (266)
T ss_dssp GGGGGCHHHHHGGGGGCS---SHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 23478 9999999998 89999999777654
No 118
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=78.35 E-value=44 Score=33.48 Aligned_cols=126 Identities=11% Similarity=0.080 Sum_probs=92.0
Q ss_pred HHHhcCCC-ccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHH
Q 010064 288 LYNLSIFP-SNISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQE 364 (519)
Q Consensus 288 L~nLs~~~-~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe 364 (519)
|.||..++ +.+.-++...+|..+..++. ..++....+..|...+....-+..-. ...+|-++..+.-++++++.-
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceEE
Confidence 44555554 57888999999999999986 45688888888877765433222111 346777777776567888999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcC-------CHHHHHHHHHHHHHh
Q 010064 365 KASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG-------STLAQKRASRILECL 415 (519)
Q Consensus 365 ~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~g-------s~~~~~~A~~~L~~l 415 (519)
...+.|.|..++....++..+..|+|+-|-..+..- ...-++.|+.++.+-
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 999999999988677788889999999998887643 334566777776653
No 119
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=75.42 E-value=51 Score=30.98 Aligned_cols=150 Identities=13% Similarity=-0.030 Sum_probs=93.2
Q ss_pred hcchhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhcC-
Q 010064 127 KEEALEELKIVVKDL-QSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG-MLDFQLADSQISSLYALLNLGI- 203 (519)
Q Consensus 127 ~~g~~~~l~~Lv~~L-~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~-lL~s~~~~~~~~a~~aL~NLa~- 203 (519)
+....+.+..+...| .++..++|..|+..|..+ ..+ .. +++.+.. +-..++-.+++.++.++..++.
T Consensus 65 ~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---~~------~L~~ir~~va~D~~WrVre~lA~a~~~~~~~ 134 (240)
T 3l9t_A 65 KSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---KE------ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKK 134 (240)
T ss_dssp HHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---HH------HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---HH------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHh
Confidence 333344555666655 455578899999987777 321 22 3445555 4455778899999999999985
Q ss_pred CChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHH
Q 010064 204 GNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQD 283 (519)
Q Consensus 204 ~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~ 283 (519)
..++ -.++.+...++++ +..++..|+-.+.--+..+. ...-...++.++.......+.-++..
T Consensus 135 ~~pe--------~~l~~~~~W~~d~---n~~VRR~Ase~~rpW~~~~~------~k~dp~~ll~iL~~L~~D~s~yVrKS 197 (240)
T 3l9t_A 135 IEYK--------KALPIIDEWLKSS---NLHTRRAATEGLRIWTNRPY------FKENPNEAIRRIADLKEDVSEYVRKS 197 (240)
T ss_dssp HCTT--------TTHHHHHHHHHCS---SHHHHHHHHHHTCSGGGSTT------TTTCHHHHHHHHHTTTTCSCHHHHHH
T ss_pred cCHH--------HHHHHHHHHhcCC---CHHHHHHHHHhhHHHhccch------hhcCHHHHHHHHHHhcCChHHHHHHH
Confidence 2222 1678899999998 89999988655432111110 11222233333332222278899999
Q ss_pred HHHHHHHhcCCCc-cHHHHHh
Q 010064 284 ALRALYNLSIFPS-NISFILE 303 (519)
Q Consensus 284 A~~aL~nLs~~~~-n~~~l~~ 303 (519)
..++|..++.... -...+++
T Consensus 198 Van~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 198 VGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhhCHHHHHHHHH
Confidence 9999999998654 4444444
No 120
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=74.80 E-value=89 Score=36.44 Aligned_cols=219 Identities=15% Similarity=0.085 Sum_probs=120.9
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHhcCC-----
Q 010064 134 LKIVVKDLQSE--SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML--DFQLADSQISSLYALLNLGIG----- 204 (519)
Q Consensus 134 l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL--~s~~~~~~~~a~~aL~NLa~~----- 204 (519)
+..++..+.++ +...|..|-..|..+-... + +...+...| .+.+..++..|+.+|.|....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-P---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-T---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-h---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 44444444444 5667888888887765332 1 333333333 346789999999999997632
Q ss_pred ChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHH
Q 010064 205 NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQ 282 (519)
Q Consensus 205 ~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~ 282 (519)
+++.|.. ++..++..+.............++..++.++..++.. ++. ....++.|++++.+ +.....
T Consensus 83 ~~e~k~~-Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~-----~~~~~e 151 (1204)
T 3a6p_A 83 SRLEKVY-LKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ-----GETQTE 151 (1204)
T ss_dssp CHHHHHH-HHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT-----CHHHHH
T ss_pred CHHHHHH-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC-----CHHHHH
Confidence 2334443 3444666665542210001466777666666665543 221 35678999998875 445577
Q ss_pred HHHHHHHHhcCC---Cc----cHHH-----HHhc--CcHHHHHHHcCC---------------------HHHHHHHHHHH
Q 010064 283 DALRALYNLSIF---PS----NISF-----ILET--DLIRYLLEMLGD---------------------MELSERILSIL 327 (519)
Q Consensus 283 ~A~~aL~nLs~~---~~----n~~~-----l~~~--g~v~~Lv~lL~~---------------------~~v~~~Al~~L 327 (519)
.++.+|..|+.. .+ .+.. +.+. .+++.+..+|.+ ..+...++.++
T Consensus 152 ~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l 231 (1204)
T 3a6p_A 152 LVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTL 231 (1204)
T ss_dssp HHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHH
Confidence 788888887532 11 1111 1111 122223333321 12555677777
Q ss_pred HHhcCCcccHHHHhhcC-CcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064 328 SNLVSTPEGRKAISRVP-DAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS 377 (519)
Q Consensus 328 ~nLs~~~e~r~~i~~~~-g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~ 377 (519)
.+....-.. ..+.... ..++.+..++. ++.++..|+.+|..++...
T Consensus 232 ~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 232 AGYIDWVSM-SHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HTTTTTSCH-HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCC
T ss_pred HHHHhccCH-HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCC
Confidence 665553221 2222311 25666666555 4778999999999998754
No 121
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=73.03 E-value=68 Score=36.61 Aligned_cols=218 Identities=14% Similarity=0.112 Sum_probs=122.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcCC-----Chh
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIG-----NDL 207 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~NLa~~-----~~~ 207 (519)
+..++..+.+++.+.|..|-..|..+-+. + ++...+..+|. +.+..++..|+.+|.|.... +++
T Consensus 18 l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~ 87 (1049)
T 3m1i_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQDN-P---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1049)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHS-T---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHH
Confidence 55556556666766777777787766533 2 34445555554 46889999999999998632 233
Q ss_pred hHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHH
Q 010064 208 NKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQD 283 (519)
Q Consensus 208 nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~ 283 (519)
.|..| +..++..+...-..+.. .+..++...+.++..++.. ++. ..+.++.|++.++. +...+..
T Consensus 88 ~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~-----Wp~ll~~L~~~~~~-----~~~~~~~ 156 (1049)
T 3m1i_C 88 HRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-----WPEFIPELIGSSSS-----SVNVCEN 156 (1049)
T ss_dssp HHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHTT-----CHHHHHH
T ss_pred HHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHHcc-----ChHHHHH
Confidence 34333 44455555554322100 0134555555555555433 221 25678999998863 4555666
Q ss_pred HHHHHHHhcCC-----Cc----cH-----HHHHhc--CcHHHHHHHc---CCHHHHHHHHHHHHHhcCCcccHHHHhhcC
Q 010064 284 ALRALYNLSIF-----PS----NI-----SFILET--DLIRYLLEML---GDMELSERILSILSNLVSTPEGRKAISRVP 344 (519)
Q Consensus 284 A~~aL~nLs~~-----~~----n~-----~~l~~~--g~v~~Lv~lL---~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~ 344 (519)
++.+|..|+.. .+ .+ ..+.+. .+++.+..++ .+.++...++.++.+....-.. ..+.. .
T Consensus 157 ~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~-~ 234 (1049)
T 3m1i_C 157 NMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYE-T 234 (1049)
T ss_dssp HHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHS-S
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhh-h
Confidence 77777766521 11 11 112211 1222233333 2456888899999887763332 22333 4
Q ss_pred CcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064 345 DAFPILVDVLNWTDSPGCQEKASYVLMVMAHK 376 (519)
Q Consensus 345 g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~ 376 (519)
..+..+.+.+. .++.++..|+.+|..+...
T Consensus 235 ~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 235 NILELLSTKFM--TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp SHHHHHHTHHH--HSHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHhC--CCHhHHHHHHHHHHHHHhC
Confidence 56666664332 2578888888888877754
No 122
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=72.30 E-value=13 Score=42.83 Aligned_cols=143 Identities=10% Similarity=0.063 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHHhccChh--hHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCChhhHHHHHhcC
Q 010064 144 ESEEQRREAASKVRSLAKENSE--TRVTLAMLGAIPPLAGMLDF-----QLADSQISSLYALLNLGIGNDLNKAAIVKAG 216 (519)
Q Consensus 144 ~~~~~~~~Aa~~L~~La~~~~~--~r~~l~~~G~i~~Lv~lL~s-----~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG 216 (519)
.++..+..++.+++.++..-.+ ....+. .+++.|+.++.. +.+.++..++|+|+..+.--..+.. +++ .
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~L~-~ 540 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FLR-T 540 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-HHH-H
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-HHH-H
Confidence 4788889999999998865322 233333 377888888763 2233445677888876642122222 222 2
Q ss_pred cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh------CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064 217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS------SGAVPFLVKTLKNSDKKVSPQAKQDALRALYN 290 (519)
Q Consensus 217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~------~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~n 290 (519)
++..|+..+..+ ++.++..|++++.+|+.. .+..+.. .-.++.++..+.......+......+..++..
T Consensus 541 vl~~L~~~l~~~---~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 541 VILKLFEFMHET---HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHHHTTCS---CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcC---CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566677777665 689999999999999853 3333321 11344443332221111466777788888888
Q ss_pred hcCCC
Q 010064 291 LSIFP 295 (519)
Q Consensus 291 Ls~~~ 295 (519)
+...-
T Consensus 616 vi~~~ 620 (1023)
T 4hat_C 616 IISEE 620 (1023)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 87654
No 123
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=70.30 E-value=2.8 Score=39.83 Aligned_cols=20 Identities=5% Similarity=0.383 Sum_probs=12.2
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHH
Q 010064 220 KMLKLIESPVAPNPSVSEAIVAN 242 (519)
Q Consensus 220 ~Lv~lL~s~~~~~~~~~~~a~~a 242 (519)
.+..+++++ +..++..++..
T Consensus 150 ~l~~l~~D~---d~~VR~~aa~~ 169 (244)
T 1lrv_A 150 RLFRFMRDE---DRQVRKLVAKR 169 (244)
T ss_dssp GGGGTTTCS---CHHHHHHHHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHc
Confidence 444556665 67777766654
No 124
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=69.65 E-value=33 Score=35.71 Aligned_cols=118 Identities=18% Similarity=0.230 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhh
Q 010064 276 VSPQAKQDALRALYNLSIF-PSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVD 352 (519)
Q Consensus 276 ~~~~~~~~A~~aL~nLs~~-~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~ 352 (519)
++.+.++-|+..+.....+ ++. +..++..++.+.+|. .++..|..-|..+|.. +....+ ...|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l-----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki------aDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPEL-----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV------ADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGG-----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH------HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH------HHHHHH
Confidence 5788888888888776543 332 234677888888654 4888999999988877 554444 448899
Q ss_pred hccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010064 353 VLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILEC 414 (519)
Q Consensus 353 lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~ 414 (519)
+|. ++++.....+-..|..|....+. +.+..|...+..+++.+|.++...|+.
T Consensus 108 lLq-tdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 108 LLQ-TDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HTT-CCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHh-ccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 999 77777777777777777654332 456667777777888889886666643
No 125
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=69.24 E-value=72 Score=29.51 Aligned_cols=124 Identities=13% Similarity=0.105 Sum_probs=78.9
Q ss_pred hhHHHHHhcCCHHHHHHhhcC----C-------CHHHHHHHHHHHHHhcCCChhhHHHHHh-cCcHHHHHHhhcCCCCCC
Q 010064 165 ETRVTLAMLGAIPPLAGMLDF----Q-------LADSQISSLYALLNLGIGNDLNKAAIVK-AGAVHKMLKLIESPVAPN 232 (519)
Q Consensus 165 ~~r~~l~~~G~i~~Lv~lL~s----~-------~~~~~~~a~~aL~NLa~~~~~nk~~iv~-aG~v~~Lv~lL~s~~~~~ 232 (519)
.--..| ..+|+..|+.+|.. . +...+..++.+|..+.. +......++. .+.+..|+..+.++ +
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~---~ 109 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPA---V 109 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTT---S
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCC---C
Confidence 333444 46788888887743 1 35678889999999987 4766666776 47899999999877 8
Q ss_pred HHHHHHHHHHHHHhccCCC--C-hhhhh----------hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 010064 233 PSVSEAIVANFLGLSALDS--N-KPIIG----------SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS 296 (519)
Q Consensus 233 ~~~~~~a~~aL~~LS~~~~--~-k~~I~----------~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~ 296 (519)
+.++..++-.|..++..++ . ...+. +..-...+|..+.+. .+.+.+..++..+-.|..+++
T Consensus 110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~---~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG---TSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT---SCHHHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC---ChHHHHHHHHHHHHHHHCCCC
Confidence 8988888777766665543 3 33332 122344556655542 455555555555544444443
No 126
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=69.07 E-value=12 Score=33.12 Aligned_cols=74 Identities=7% Similarity=0.011 Sum_probs=58.4
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKE-NSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLG 202 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~-~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa 202 (519)
+..+.++.|.+.|.+.++.++..|+..|-.+.+. .......++...++..|+.++.. .++.++..++..+..-+
T Consensus 49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4455688899999999999999999999888876 35677677777788888888865 56788888777776655
No 127
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=67.62 E-value=14 Score=32.11 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=61.2
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHh
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKE-NSETRVTLAMLGAIPPLAGMLDF------QLADSQISSLYALLNL 201 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~-~~~~r~~l~~~G~i~~Lv~lL~s------~~~~~~~~a~~aL~NL 201 (519)
+..+.++.|.+.|++.|+.++..|+..|-.+.+. ...+...++...++..|+.++.. .+..++..++..+..-
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 3455588899999999999999999999998876 35677778778889999999863 4678888888888776
Q ss_pred cC
Q 010064 202 GI 203 (519)
Q Consensus 202 a~ 203 (519)
+.
T Consensus 115 ~~ 116 (148)
T 1mhq_A 115 TV 116 (148)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 128
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=66.64 E-value=11 Score=32.41 Aligned_cols=73 Identities=4% Similarity=0.007 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 010064 130 ALEELKIVVKDLQSESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLG 202 (519)
Q Consensus 130 ~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa 202 (519)
..+.++.|.+.|.++++.++..|+..|-.+.+.- ......++...++..|+.+++..++.++...+..+...+
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3445888899999999999999999888888663 355656666667788888887778888888888887665
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=64.83 E-value=48 Score=38.21 Aligned_cols=129 Identities=15% Similarity=0.113 Sum_probs=86.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHhcCCChhh
Q 010064 136 IVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-------QLADSQISSLYALLNLGIGNDLN 208 (519)
Q Consensus 136 ~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-------~~~~~~~~a~~aL~NLa~~~~~n 208 (519)
.+.+.+..++.+.+..++++|.|+-.. ..++.|..+|.. ....++..|++||.+++.. .+.
T Consensus 444 ~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-~p~ 511 (1056)
T 1lsh_A 444 LLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-DPR 511 (1056)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-CHH
T ss_pred HHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh-chH
Confidence 344445566777777788888887742 246677777742 2457888999999999864 221
Q ss_pred HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064 209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL 288 (519)
Q Consensus 209 k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL 288 (519)
+ +-+.|+.+..+... +.+++.+|...|+.-. ++ . ..+..+...+... .+.++.......|
T Consensus 512 ~-------v~~il~~i~~n~~e-~~EvRiaA~~~Lm~t~--P~-~------~~l~~ia~~l~~E---~~~QV~sfv~S~l 571 (1056)
T 1lsh_A 512 K-------VQEIVLPIFLNVAI-KSELRIRSCIVFFESK--PS-V------ALVSMVAVRLRRE---PNLQVASFVYSQM 571 (1056)
T ss_dssp H-------HHHHHHHHHHCTTS-CHHHHHHHHHHHHHTC--CC-H------HHHHHHHHHHTTC---SCHHHHHHHHHHH
T ss_pred H-------HHHHHHHHhcCCCC-ChHHHHHHHHHHHHHC--cC-H------HHHHHHHHHHhhC---chHHHHHHHHHHH
Confidence 1 34567777755433 7888888876665432 22 1 1356666777664 7899999999999
Q ss_pred HHhcCCCc
Q 010064 289 YNLSIFPS 296 (519)
Q Consensus 289 ~nLs~~~~ 296 (519)
.+|+..+.
T Consensus 572 ~sla~s~~ 579 (1056)
T 1lsh_A 572 RSLSRSSN 579 (1056)
T ss_dssp HHHTTCCS
T ss_pred HHHHhcCC
Confidence 99998764
No 130
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=63.53 E-value=14 Score=32.88 Aligned_cols=75 Identities=9% Similarity=0.078 Sum_probs=60.4
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHh
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDF------QLADSQISSLYALLNL 201 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s------~~~~~~~~a~~aL~NL 201 (519)
+..+.++.|.+.|++.|+.++..|+..|-.+.+.- ......++...++.-|+.++.. .+..++..++..+..-
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 34455888999999999999999999999988763 4677778778889999999863 3578888888888776
Q ss_pred cC
Q 010064 202 GI 203 (519)
Q Consensus 202 a~ 203 (519)
+.
T Consensus 127 ~~ 128 (171)
T 1juq_A 127 TM 128 (171)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 131
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=60.52 E-value=22 Score=30.92 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=59.8
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHh
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDF------QLADSQISSLYALLNL 201 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s------~~~~~~~~a~~aL~NL 201 (519)
+..+.++.|.+.|.+.|+.++..|+..|-.+.+.- ..+...++...++.-|+.++.. .+..++...+..+..-
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 34455888999999999999999999998888763 3566777777888899999863 5788898888888777
Q ss_pred cC
Q 010064 202 GI 203 (519)
Q Consensus 202 a~ 203 (519)
+.
T Consensus 125 ~~ 126 (149)
T 3g2s_A 125 TV 126 (149)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 132
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=59.58 E-value=1.5e+02 Score=29.75 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=78.8
Q ss_pred cCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCChhhHHHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHH
Q 010064 173 LGAIPPLAGMLDF-----------QLADSQISSLYALLNLGIGNDLNKAAIVK-AGAVHKMLKLIESPVAPNPSVSEAIV 240 (519)
Q Consensus 173 ~G~i~~Lv~lL~s-----------~~~~~~~~a~~aL~NLa~~~~~nk~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~ 240 (519)
.+|+..|+.+|.. .+...+..++.+|..|.. +......++. ..++..|+..+.++ ++.++..++
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~---~~~~r~~vl 121 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPA---VPNMMIDAA 121 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTT---SHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCC---CchHHHHHH
Confidence 5677777777742 145678889999999887 4666666666 47899999999877 788888887
Q ss_pred HHHHHhccCCC--C-hhhhh----------hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 010064 241 ANFLGLSALDS--N-KPIIG----------SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS 296 (519)
Q Consensus 241 ~aL~~LS~~~~--~-k~~I~----------~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~ 296 (519)
-.|..++..+. . ...+. +..-...||..+... .+.+.+..++..+-.|..+++
T Consensus 122 eLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~---~~~e~~~a~m~lIN~lv~~~~ 187 (386)
T 2bnx_A 122 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG---TSIALKVGCLQLINALITPAE 187 (386)
T ss_dssp HHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT---SCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC---ChHHHHHHHHHHHHHHHCCCC
Confidence 66666655443 3 33322 233455677777653 677777766666666665554
No 133
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=57.65 E-value=2.5e+02 Score=31.83 Aligned_cols=208 Identities=13% Similarity=0.070 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC---CHHHHHHHHHHHHHhcCCChhh----HHHHHhcCc
Q 010064 145 SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQ---LADSQISSLYALLNLGIGNDLN----KAAIVKAGA 217 (519)
Q Consensus 145 ~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~---~~~~~~~a~~aL~NLa~~~~~n----k~~iv~aG~ 217 (519)
+.+.|..|-..|..+-+. ++ +......+|... ++.++.-|+.+|.+....-+.. ....++.-+
T Consensus 21 d~~~r~~A~~~L~~~q~s-p~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~l 90 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-ST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSV 90 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-TT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC-hh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHH
Confidence 678888888888777644 33 333555666543 7899999999988765421222 334444446
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC--
Q 010064 218 VHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI-- 293 (519)
Q Consensus 218 v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~-- 293 (519)
+..+...-... . ...++...+.+|..+... ++ .....++-|+.++... ....+....+.+|..|+.
T Consensus 91 l~~l~~~~~~~-~-~~~IrnKL~~~la~l~~~~~p~-----~Wp~~i~~l~~~~~~~---~~~~~~~~~LriL~~i~EEv 160 (980)
T 3ibv_A 91 WSYIKELSFLD-E-PAYISNAVQHLLTLLFLQLYPS-----NWNDFFASLQGVIAAS---SQSEFSNFYLKVLLSIGDEI 160 (980)
T ss_dssp HHHHHHCCSTT-S-CTHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-C-cHHHHHHHHHHHHHHHHHhCcc-----cCchHHHHHHHHhcCC---ChhHHHHHHHHHHHHhHHHH
Confidence 66666521111 1 345666665556555432 22 2356788888888762 121344555666653321
Q ss_pred --CC-----c--c-----HHHHHhc---CcHHHHHHHc------CCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhh
Q 010064 294 --FP-----S--N-----ISFILET---DLIRYLLEML------GDMELSERILSILSNLVSTPEGRKAISRVPDAFPIL 350 (519)
Q Consensus 294 --~~-----~--n-----~~~l~~~---g~v~~Lv~lL------~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~L 350 (519)
.. + . +..+.+. .+++....+| .++++...++.+|..-...-. -..+.. ...++.+
T Consensus 161 ~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~-~~ll~~l 238 (980)
T 3ibv_A 161 ADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVN-EPCMNLL 238 (980)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHC-HHHHHHH
T ss_pred HhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhc-chHHHHH
Confidence 10 0 1 1112211 1133333444 345678888888888877433 344555 5788888
Q ss_pred hhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064 351 VDVLNWTDSPGCQEKASYVLMVMAHKS 377 (519)
Q Consensus 351 v~lL~~s~~~~~qe~A~~~L~nL~~~~ 377 (519)
..+|. ++.+++.|+.+|+.+....
T Consensus 239 ~~~L~---~~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 239 YSFLQ---IEELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHTT---SHHHHHHHHHHHHHHHHSC
T ss_pred HHHcC---ChHHHHHHHHHHHHHHHcC
Confidence 88887 3899999999999988753
No 134
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.96 E-value=18 Score=33.73 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLG 202 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa 202 (519)
+..+.++.|.+.|.+.|+.++..|+..|-.+.++- ......++...++..|+.+++. .+..++..++..|...+
T Consensus 42 ~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 42 QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 44455888999999999999999999998888662 3466667667777888888754 56778888888777665
No 135
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=55.81 E-value=2e+02 Score=33.38 Aligned_cols=259 Identities=14% Similarity=0.068 Sum_probs=140.7
Q ss_pred cCCCHHHHHHHHHHHHHHhcc-----ChhhHHHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064 142 QSESEEQRREAASKVRSLAKE-----NSETRVTLAMLGAIPPLAGMLDF---QLADSQISSLYALLNLGIGNDLNKAAIV 213 (519)
Q Consensus 142 ~s~~~~~~~~Aa~~L~~La~~-----~~~~r~~l~~~G~i~~Lv~lL~s---~~~~~~~~a~~aL~NLa~~~~~nk~~iv 213 (519)
.+.+..+|..|+..|++..+. +++.|..+. ..++..+...-.. ....++...+.++..++...-...
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~---- 131 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH---- 131 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----
Confidence 345788999999999986543 334555443 2333443332111 357788888888888876411100
Q ss_pred hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC---CCC----h-----hhhhhC--CChHHHHHHhhcCC------
Q 010064 214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL---DSN----K-----PIIGSS--GAVPFLVKTLKNSD------ 273 (519)
Q Consensus 214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~---~~~----k-----~~I~~~--gai~~LV~lL~~~~------ 273 (519)
=.+.++.|+.++.++ ....+.+..+|..|+.. .+. | ..+.+. ..++.+..++....
T Consensus 132 Wp~ll~~L~~~~~~~----~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~ 207 (1204)
T 3a6p_A 132 WPDMLIELDTLSKQG----ETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQV 207 (1204)
T ss_dssp CTTHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 136788888888764 56677777777666421 111 1 112211 22333333443200
Q ss_pred -C--------CCCHHHHHHHHHHHHHhcCCCccHHHHHhcC--cHHHHHHHcCCHHHHHHHHHHHHHhcCC---cccHHH
Q 010064 274 -K--------KVSPQAKQDALRALYNLSIFPSNISFILETD--LIRYLLEMLGDMELSERILSILSNLVST---PEGRKA 339 (519)
Q Consensus 274 -~--------~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g--~v~~Lv~lL~~~~v~~~Al~~L~nLs~~---~e~r~~ 339 (519)
+ ..+..+...++.+|.+....-+ ...+.+.. .++.++.++.+++++..|+.+|..+... ++.+..
T Consensus 208 ~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~-~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~ 286 (1204)
T 3a6p_A 208 KTDTSQESKAQANCRVGVAALNTLAGYIDWVS-MSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKP 286 (1204)
T ss_dssp TTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC-HHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGG
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHhccC-HHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHH
Confidence 0 0123456667777766554432 22333433 7788888888888999999999999972 233333
Q ss_pred HhhcC--Ccchhhhhhcc-------CCCCHHHHHHHHHHHHHHhcCChhhHHHHHH----------cCcHHHHHHHhhcC
Q 010064 340 ISRVP--DAFPILVDVLN-------WTDSPGCQEKASYVLMVMAHKSYGDRQAMIE----------AGIASALLELTLLG 400 (519)
Q Consensus 340 i~~~~--g~i~~Lv~lL~-------~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~----------~G~i~~Ll~Ll~~g 400 (519)
++..- ..+..++..+. ...+.+..+.-+.++..+.. .....+.+ .+.++.++.++.++
T Consensus 287 li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~ 363 (1204)
T 3a6p_A 287 LMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVETPSNFGKYLESFLAFTTHP 363 (1204)
T ss_dssp GGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS
T ss_pred HHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccChhHHHHHHHHHHHHHhCc
Confidence 33310 11223344321 01124455566666666662 11211110 24678888888888
Q ss_pred CHHHHHHHHHHHH
Q 010064 401 STLAQKRASRILE 413 (519)
Q Consensus 401 s~~~~~~A~~~L~ 413 (519)
+..+-..+.....
T Consensus 364 ~~~vs~~~l~fW~ 376 (1204)
T 3a6p_A 364 SQFLRSSTQMTWG 376 (1204)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHhHHHHHHHHH
Confidence 7777766665444
No 136
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=48.78 E-value=3.6e+02 Score=30.99 Aligned_cols=180 Identities=12% Similarity=0.057 Sum_probs=110.4
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHHhcc-----ChhhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCC
Q 010064 137 VVKDLQ-SESEEQRREAASKVRSLAKE-----NSETRVTLAMLGAIPPLAGMLDF-----QLADSQISSLYALLNLGIGN 205 (519)
Q Consensus 137 Lv~~L~-s~~~~~~~~Aa~~L~~La~~-----~~~~r~~l~~~G~i~~Lv~lL~s-----~~~~~~~~a~~aL~NLa~~~ 205 (519)
+...|. +.+..+|..|+..|.+..+. +++-+..+ +..++..+...-.. .++.++...+.++..++...
T Consensus 65 ~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~ 143 (1073)
T 3gjx_A 65 VDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQE 143 (1073)
T ss_dssp HTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHh
Confidence 333343 45788999999999986553 23344433 33344444443322 24556666677777766431
Q ss_pred -hhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CC-------------ChhhhhhCCChHHHHH---
Q 010064 206 -DLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DS-------------NKPIIGSSGAVPFLVK--- 267 (519)
Q Consensus 206 -~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~-------------~k~~I~~~gai~~LV~--- 267 (519)
+.. =.+.++-|+..+..+ +...+..+.+|..|+.. .+ .+..+.+. ++.++.
T Consensus 144 ~P~~-----Wp~fi~dLv~~~~~~----~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~ 212 (1073)
T 3gjx_A 144 WPKH-----WPTFISDIVGASRTS----ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQ 212 (1073)
T ss_dssp TTTT-----CTTHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred Chhh-----ccHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 111 124677777777643 55566666666666532 00 12223222 444444
Q ss_pred -HhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHH-HHHcCCHHHHHHHHHHHHHhcC
Q 010064 268 -TLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYL-LEMLGDMELSERILSILSNLVS 332 (519)
Q Consensus 268 -lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~L-v~lL~~~~v~~~Al~~L~nLs~ 332 (519)
+|... .++.+...++.+|..+...-+ ...+++.+.++.| ..+|.+++++..|+.+|..+..
T Consensus 213 ~iL~~~---~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll~~L~~~~L~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 213 FVMENS---QNAPLVHATLETLLRFLNWIP-LGYIFETKLISTLIYKFLNVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHC---CCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHhccc---CCHHHHHHHHHHHHHHHHhcC-HHHhccchHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 44443 678888889999999887754 3456778899988 5888999999999999999876
No 137
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.42 E-value=36 Score=31.36 Aligned_cols=74 Identities=8% Similarity=0.046 Sum_probs=56.0
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 010064 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLG 202 (519)
Q Consensus 129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa 202 (519)
+..+.++.|.+.|.+.|+.++..|+..|-.+.+.- ......++...++..|+.++.. .+..++..++..+..-+
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 44455888899999999999999999999988764 3566667666778888888754 45777777776666555
No 138
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=44.51 E-value=1.4e+02 Score=28.26 Aligned_cols=141 Identities=10% Similarity=0.033 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064 134 LKIVVKDLQSESEEQRREAASKVRSLAKE-NSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212 (519)
Q Consensus 134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~-~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i 212 (519)
+-.++........+.|+..+..++.|... ++..-. .+++.++.+....+.+++.-.+..|...+....+
T Consensus 17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~----- 86 (257)
T 3gs3_A 17 VVDWCNELVIASPSTKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE----- 86 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-----
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH-----
Confidence 44455544544447888888888886655 333222 2567788877667888888888888877743222
Q ss_pred HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHH--------hccCCCCh---hhh-hh-CCChHHHHHHhhcCCCCCCHH
Q 010064 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLG--------LSALDSNK---PII-GS-SGAVPFLVKTLKNSDKKVSPQ 279 (519)
Q Consensus 213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~--------LS~~~~~k---~~I-~~-~gai~~LV~lL~~~~~~~~~~ 279 (519)
+-.-+++.|..++.++ ++.+...++.+..+ ++.++... ... .. ...=..++.++.+ .+..
T Consensus 87 l~~~~l~~L~~Ll~d~---d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s----~n~g 159 (257)
T 3gs3_A 87 LLPHVINVVSMLLRDN---SAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDN----ENDG 159 (257)
T ss_dssp GHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGS----SCHH
T ss_pred HHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHcc----CCcc
Confidence 1123567777888776 77777666433322 22222110 000 00 1122344555555 5677
Q ss_pred HHHHHHHHHHHh
Q 010064 280 AKQDALRALYNL 291 (519)
Q Consensus 280 ~~~~A~~aL~nL 291 (519)
++..|+..+-.+
T Consensus 160 vkl~~iKF~e~v 171 (257)
T 3gs3_A 160 IRTNAIKFLEGV 171 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 777777666554
No 139
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=41.69 E-value=1.4e+02 Score=27.99 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHHhc-cChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--ChhhHHHHHhcCcHH
Q 010064 143 SESEEQRREAASKVRSLAK-ENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIG--NDLNKAAIVKAGAVH 219 (519)
Q Consensus 143 s~~~~~~~~Aa~~L~~La~-~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~--~~~nk~~iv~aG~v~ 219 (519)
.++..++.-++..+..++. .+++. .++.+...+.+++..++..|...+.--+.. ...+.. -++|
T Consensus 115 D~~WrVre~lA~a~~~~~~~~~pe~--------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~ 181 (240)
T 3l9t_A 115 DNNWRVQEVLAKAFDEFCKKIEYKK--------ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIR 181 (240)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCTTT--------THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHH
T ss_pred CCCccHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHH
Confidence 4577788888888888774 44331 567888899999999999998887643321 011111 1455
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC
Q 010064 220 KMLKLIESPVAPNPSVSEAIVANFLGLSALDS 251 (519)
Q Consensus 220 ~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~ 251 (519)
.|-.+..++ +.-++.++++.|..+|...+
T Consensus 182 iL~~L~~D~---s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 182 RIADLKEDV---SEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp HHHTTTTCS---CHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCh---HHHHHHHHHHHHHHHhhhCH
Confidence 565566666 78899999999999997643
No 140
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=37.29 E-value=46 Score=31.48 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCCcc-cHHHHhhcCCcchhhhhhccCC-------CCHHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 010064 317 MELSERILSILSNLVSTPE-GRKAISRVPDAFPILVDVLNWT-------DSPGCQEKASYVLMVMAHKSYGDRQAMIEAG 388 (519)
Q Consensus 317 ~~v~~~Al~~L~nLs~~~e-~r~~i~~~~g~i~~Lv~lL~~s-------~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G 388 (519)
+..+.-++++++|+-.++. +++.+... .....+++.+... .+..++-.++.++.|++......+. +..
T Consensus 104 ~~~~ml~lR~l~NlF~~~~~g~~l~~~~-~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e 179 (253)
T 3gae_A 104 ITLTMLTVRILVNCFNNENWGVKLLESN-QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLE 179 (253)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSH-HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTT
T ss_pred hhHHHHHHHHHHHcccCCchHHHHHhcc-hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHH
Confidence 4577889999999999888 67766652 3344555544211 2456777888889999863111110 122
Q ss_pred cHHHHHHHhh---------cCCHHHHHHHHHHHHHhhh
Q 010064 389 IASALLELTL---------LGSTLAQKRASRILECLRV 417 (519)
Q Consensus 389 ~i~~Ll~Ll~---------~gs~~~~~~A~~~L~~l~~ 417 (519)
....+++.+. ..++++.-|+..+|.+|..
T Consensus 180 ~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 180 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp HHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 3344455444 2378899999999999995
No 141
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=37.20 E-value=78 Score=27.46 Aligned_cols=75 Identities=12% Similarity=0.010 Sum_probs=57.1
Q ss_pred chhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHH-HHHhhcC---CCHHHHHHHHHHHHHhc
Q 010064 129 EALEELKIVVKDLQ-SESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPP-LAGMLDF---QLADSQISSLYALLNLG 202 (519)
Q Consensus 129 g~~~~l~~Lv~~L~-s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~-Lv~lL~s---~~~~~~~~a~~aL~NLa 202 (519)
+..+.++.|.+.|+ ..|+.++..|+..|-.+.+.- ......++...++.- |+.++.. ....++..++..+..-+
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 44556888999997 589999999999999888763 567777777778887 7888842 34678888877777655
Q ss_pred C
Q 010064 203 I 203 (519)
Q Consensus 203 ~ 203 (519)
.
T Consensus 130 ~ 130 (157)
T 1elk_A 130 D 130 (157)
T ss_dssp H
T ss_pred H
Confidence 3
No 142
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=31.10 E-value=1.9e+02 Score=27.27 Aligned_cols=65 Identities=18% Similarity=0.097 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNL 201 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NL 201 (519)
+.++.++......+.++|...+..|...++.+++.-.. +++.|..+|+.+++.+...+..+..++
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~-----~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPH-----VINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 33666666555677888888899998888766544332 467888888877777776666655543
No 143
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=30.64 E-value=37 Score=32.10 Aligned_cols=100 Identities=12% Similarity=0.167 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHc----CC------HHHHHHHHHHHHHhcCC-cccHHHHhhc
Q 010064 276 VSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEML----GD------MELSERILSILSNLVST-PEGRKAISRV 343 (519)
Q Consensus 276 ~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL----~~------~~v~~~Al~~L~nLs~~-~e~r~~i~~~ 343 (519)
.++..+.-++++|+|+..++. .+..+.+......++..+ .+ ..++..+...+.|++.. ...+. +
T Consensus 102 ~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~- 177 (253)
T 3gae_A 102 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D- 177 (253)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C-
T ss_pred CchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h-
Confidence 578899999999999999888 555554433344455444 22 23777888888999872 11111 1
Q ss_pred CCcchhhhhhccC--------CCCHHHHHHHHHHHHHHhcCChh
Q 010064 344 PDAFPILVDVLNW--------TDSPGCQEKASYVLMVMAHKSYG 379 (519)
Q Consensus 344 ~g~i~~Lv~lL~~--------s~~~~~qe~A~~~L~nL~~~~~~ 379 (519)
......+++.+.. ..+++..-.+.-++++|...++.
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~ 221 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 221 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHH
Confidence 1223344444431 12556666778888888865443
No 144
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=28.10 E-value=1.3e+02 Score=26.33 Aligned_cols=72 Identities=7% Similarity=0.011 Sum_probs=53.2
Q ss_pred cchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhc-CCHHHHHHHHHHHHHhhhc
Q 010064 346 AFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLL-GSTLAQKRASRILECLRVD 418 (519)
Q Consensus 346 ~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~-gs~~~~~~A~~~L~~l~~~ 418 (519)
++..|..-|. +.++.++-.|..+|-.+..+ ....+..+.....+.-|+.++.. .++.++.++..+++.-.+.
T Consensus 53 A~ral~krl~-~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVN-HKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 4446666677 57899998888888777654 34455566667778888888875 5689999999988887754
No 145
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=27.80 E-value=1.1e+02 Score=26.02 Aligned_cols=72 Identities=10% Similarity=0.041 Sum_probs=51.8
Q ss_pred cchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064 346 AFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418 (519)
Q Consensus 346 ~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~ 418 (519)
++..|..-|. +.++.++..|..+|-.+..+ ...-...+.....+..|+.++...++.++.++..++....+.
T Consensus 43 a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 43 CLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 4456666677 57899998888777766653 233354555566777778888778899999999999877753
No 146
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=27.20 E-value=3e+02 Score=27.58 Aligned_cols=80 Identities=6% Similarity=-0.014 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhh
Q 010064 147 EQRREAASKVRSLAKE-NSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLI 225 (519)
Q Consensus 147 ~~~~~Aa~~L~~La~~-~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL 225 (519)
+.|+..+..+++|... ++. . -..+++.++.+-...+.+++.-++..|...+....+.- .-+++.|..++
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps---L--l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL 109 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT---L--LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLL 109 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG---G--GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH---H--HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3455555556654332 221 1 13356666666655666666666666655553211111 12345555555
Q ss_pred cCCCCCCHHHHHHH
Q 010064 226 ESPVAPNPSVSEAI 239 (519)
Q Consensus 226 ~s~~~~~~~~~~~a 239 (519)
.+. ++.+...+
T Consensus 110 ~d~---d~~V~K~~ 120 (386)
T 3o2t_A 110 RDE---NVNVVKKA 120 (386)
T ss_dssp TCS---SHHHHHHH
T ss_pred cCC---CHHHHHHH
Confidence 554 55555444
No 147
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=26.42 E-value=1.2e+02 Score=30.37 Aligned_cols=128 Identities=12% Similarity=0.062 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH-HcC--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccC-
Q 010064 281 KQDALRALYNLSIFPSNISFILETDLIRYLLE-MLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNW- 356 (519)
Q Consensus 281 ~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~-lL~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~- 356 (519)
+..++..|+-+..++... +.+..++. .+. .+..+..++++|+||-.++.....+.........+++.+..
T Consensus 180 ~FP~LDLLRl~v~~~~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHhcCCChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 555777777666555421 12222222 121 24578889999999999888444444312223444444421
Q ss_pred ------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh---------cCCHHHHHHHHHHHHHhhh
Q 010064 357 ------TDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTL---------LGSTLAQKRASRILECLRV 417 (519)
Q Consensus 357 ------s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~---------~gs~~~~~~A~~~L~~l~~ 417 (519)
..+..++-.++.++.|++......+. +....+.+++.+. ..++++.-|+..+|.+|..
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 11345777888889999864211110 1223445555555 3588999999999999995
No 148
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=25.68 E-value=1.2e+02 Score=31.09 Aligned_cols=128 Identities=11% Similarity=0.041 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH-Hc--CCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCC
Q 010064 281 KQDALRALYNLSIFPSNISFILETDLIRYLLE-ML--GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWT 357 (519)
Q Consensus 281 ~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~-lL--~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s 357 (519)
+..++..|+-+..++... +.+..++. .+ ..+..+..++++|+||-.++.....+.........+++.+...
T Consensus 243 ~FPaLDLLRl~v~~p~~~------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 555777777776655421 12222222 22 1345778899999999998884444443222344555544211
Q ss_pred -------CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh---------cCCHHHHHHHHHHHHHhhh
Q 010064 358 -------DSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTL---------LGSTLAQKRASRILECLRV 417 (519)
Q Consensus 358 -------~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~---------~gs~~~~~~A~~~L~~l~~ 417 (519)
.+..++-.++.++.|++......+. +....+.+++.+. ..++++.-|+..+|.+|..
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 1345777888889999864211110 1223445555554 3588999999999999995
No 149
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=25.44 E-value=1.9e+02 Score=29.05 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNL 201 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NL 201 (519)
+.++.++.+-...+.++|...+.+|...+..+.+.-.. +++.|..+|..+++.+...+..+..++
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLK-----LIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 33778887777788999999999999988766555322 577888888888888887777776664
No 150
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=22.80 E-value=5.3e+02 Score=25.01 Aligned_cols=134 Identities=8% Similarity=-0.046 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHH
Q 010064 103 VSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM--LGAIPPLA 180 (519)
Q Consensus 103 ~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~--~G~i~~Lv 180 (519)
..-..+|-.|..++++-...-.|.... ...+..|+ .....+...+..|++.|....+.+|..-..+.. ...+..++
T Consensus 43 ~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 345677778889998876666665432 34466666 444556778999999999999999887776665 34555555
Q ss_pred HhhcC-------CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064 181 GMLDF-------QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFL 244 (519)
Q Consensus 181 ~lL~s-------~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~ 244 (519)
.-|.. ....++..-+.+|-.|...+... ....+..|.+++..... +..++..++-++.
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~-d~~~k~Kvl~li~ 185 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNK-DKQLQIKVLELIS 185 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCC-CHHHHHHHHHHHH
Confidence 44432 24466777788888888753222 13345666665543211 4666665544443
No 151
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=22.32 E-value=3.7e+02 Score=22.97 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=62.4
Q ss_pred HHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhh
Q 010064 152 AASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF------QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLI 225 (519)
Q Consensus 152 Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s------~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL 225 (519)
-+..+...... ......+.+.|++..+-..|+- ++..+|...+.+|.+|-.. +..+.+.|+-..++-+-
T Consensus 40 lL~~V~~~l~k-~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~----~e~Lk~SglGkvv~~l~ 114 (145)
T 2xpp_A 40 NVEEISDILMS-KALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH----KEHLVTSGVGKIVYFYS 114 (145)
T ss_dssp HHHHHHHHHTC-TTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC----HHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHhh-HHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC----HHHhhcCCCCcchhhhh
Confidence 33344443322 3578889999999999888853 6788999999999998653 77888898888887777
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 010064 226 ESPVAPNPSVSEAIVANF 243 (519)
Q Consensus 226 ~s~~~~~~~~~~~a~~aL 243 (519)
+++.+ .++.+..|-..+
T Consensus 115 k~~~e-t~~nk~la~~Li 131 (145)
T 2xpp_A 115 INPKE-SKEVRASAKALV 131 (145)
T ss_dssp HCTTS-CHHHHHHHHHHH
T ss_pred cCCcc-CHHHHHHHHHHH
Confidence 77644 566666664433
No 152
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=21.80 E-value=1.3e+02 Score=25.77 Aligned_cols=72 Identities=14% Similarity=0.003 Sum_probs=54.9
Q ss_pred cchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhc------CCHHHHHHHHHHHHHhhhc
Q 010064 346 AFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLL------GSTLAQKRASRILECLRVD 418 (519)
Q Consensus 346 ~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~------gs~~~~~~A~~~L~~l~~~ 418 (519)
++..|..-|. +.++.++..|..+|-.+..+ .......+.....+.-|+.++.. ..+.++.++..+++.-.+.
T Consensus 39 a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556666677 67999999998888877764 34556677777888888888864 3679999999988887754
No 153
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=21.31 E-value=2.2e+02 Score=24.29 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhc
Q 010064 132 EELKIVVKDLQSESEEQRREAASKVRSLAKE-NSETRVTLAMLGAIPPLAGMLD 184 (519)
Q Consensus 132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~-~~~~r~~l~~~G~i~~Lv~lL~ 184 (519)
+.+..|.+.|...++..+.+|+..|..|++. ++.++..+.+.- .+|+.|.
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~---~~Ik~l~ 99 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS---VAVRNLF 99 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT---HHHHTTT
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH---HHHHHHH
Confidence 4488899999999999999999999999865 456666665532 2455554
No 154
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=20.65 E-value=1.2e+02 Score=26.70 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=54.2
Q ss_pred cchhhhhhccCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHcCcHHHHHHHhhc------CCHHHHHHHHHHHHHhhhc
Q 010064 346 AFPILVDVLNWTDSPGCQEKASYVLMVMAHKS-YGDRQAMIEAGIASALLELTLL------GSTLAQKRASRILECLRVD 418 (519)
Q Consensus 346 ~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~-~~~~~~i~~~G~i~~Ll~Ll~~------gs~~~~~~A~~~L~~l~~~ 418 (519)
++..|..-|. +.++.++..|..+|-.+..+. ...+..+.....+.-|+.++.. ..+.+++++..+++.-.+.
T Consensus 51 A~ral~krl~-~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQ-SPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4456777777 678999999988888777653 3445667777888888888862 3579999999998887754
No 155
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=20.37 E-value=3.4e+02 Score=27.63 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcC----------CHHHHHHHHHHHHHhcCC-cccHHHHhhc
Q 010064 276 VSPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLG----------DMELSERILSILSNLVST-PEGRKAISRV 343 (519)
Q Consensus 276 ~~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~----------~~~v~~~Al~~L~nLs~~-~e~r~~i~~~ 343 (519)
..+..+.-++++|+|+..++.....++.. .....++..+. +..++..+...+-|++.. ...+..
T Consensus 274 ~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---- 349 (425)
T 3pst_A 274 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---- 349 (425)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----
T ss_pred CChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----
Confidence 57889999999999999988754444433 23455665552 123777888888899872 111111
Q ss_pred CCcchhhhhhcc-----C---CCCHHHHHHHHHHHHHHhcCChhhH
Q 010064 344 PDAFPILVDVLN-----W---TDSPGCQEKASYVLMVMAHKSYGDR 381 (519)
Q Consensus 344 ~g~i~~Lv~lL~-----~---s~~~~~qe~A~~~L~nL~~~~~~~~ 381 (519)
......+++.+. . ..+++..-.++-+|++|...++..+
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~ 395 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 395 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 123334444443 0 1356777778888889886544433
Done!