Query 010065
Match_columns 519
No_of_seqs 432 out of 3474
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 20:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0151 PurD Phosphoribosylami 100.0 1.4E-67 3.1E-72 519.2 48.9 427 83-515 1-428 (428)
2 PLN02257 phosphoribosylamine-- 100.0 1.8E-67 3.9E-72 546.8 49.4 429 86-515 1-430 (434)
3 PRK13789 phosphoribosylamine-- 100.0 6.8E-67 1.5E-71 542.4 52.0 423 81-509 3-425 (426)
4 PRK05784 phosphoribosylamine-- 100.0 1.3E-61 2.8E-66 507.3 49.0 426 83-516 1-452 (486)
5 PRK00885 phosphoribosylamine-- 100.0 7.5E-61 1.6E-65 501.0 51.1 418 83-510 1-418 (420)
6 PRK06395 phosphoribosylamine-- 100.0 1.4E-58 3.1E-63 481.4 48.8 416 82-516 2-428 (435)
7 KOG0237 Glycinamide ribonucleo 100.0 3.9E-59 8.4E-64 466.3 42.6 425 82-512 2-429 (788)
8 TIGR00877 purD phosphoribosyla 100.0 1.3E-57 2.9E-62 477.5 50.0 421 83-511 1-423 (423)
9 PRK13790 phosphoribosylamine-- 100.0 5.5E-55 1.2E-59 448.7 44.6 368 130-512 10-378 (379)
10 PRK01966 ddl D-alanyl-alanine 100.0 3E-45 6.4E-50 370.9 29.3 309 55-401 3-330 (333)
11 PRK14570 D-alanyl-alanine synt 100.0 1E-44 2.2E-49 368.7 30.2 312 55-402 2-346 (364)
12 PRK14568 vanB D-alanine--D-lac 100.0 1.6E-44 3.5E-49 367.0 29.3 307 55-400 3-338 (343)
13 PRK14572 D-alanyl-alanine synt 100.0 4.4E-44 9.6E-49 364.1 30.6 307 55-400 1-343 (347)
14 PRK14569 D-alanyl-alanine synt 100.0 2.7E-43 5.8E-48 350.8 31.5 283 54-400 2-293 (296)
15 PRK09288 purT phosphoribosylgl 100.0 1.4E-41 3.1E-46 353.5 42.2 379 81-498 11-394 (395)
16 TIGR00514 accC acetyl-CoA carb 100.0 2.5E-41 5.5E-46 356.2 42.6 410 82-517 2-438 (449)
17 TIGR01142 purT phosphoribosylg 100.0 7.2E-41 1.6E-45 346.4 42.1 374 84-496 1-379 (380)
18 PRK08462 biotin carboxylase; V 100.0 3.4E-40 7.3E-45 347.7 42.3 409 82-518 4-439 (445)
19 PRK14571 D-alanyl-alanine synt 100.0 4.4E-41 9.5E-46 336.2 32.2 281 56-399 1-292 (299)
20 PRK05586 biotin carboxylase; V 100.0 4.9E-40 1.1E-44 346.1 41.3 409 82-518 2-439 (447)
21 PRK12833 acetyl-CoA carboxylas 100.0 1.4E-39 3E-44 343.5 43.5 409 82-518 5-442 (467)
22 PRK08591 acetyl-CoA carboxylas 100.0 1E-39 2.3E-44 344.8 42.1 408 82-517 2-438 (451)
23 PRK06111 acetyl-CoA carboxylas 100.0 4.1E-39 8.9E-44 340.4 42.9 395 83-506 3-419 (450)
24 PRK07178 pyruvate carboxylase 100.0 3.1E-39 6.6E-44 341.3 41.6 407 83-517 3-437 (472)
25 PLN02948 phosphoribosylaminoim 100.0 7.1E-39 1.5E-43 342.9 44.3 377 81-498 21-403 (577)
26 PRK08463 acetyl-CoA carboxylas 100.0 4E-39 8.8E-44 340.6 41.9 404 83-517 3-438 (478)
27 TIGR01205 D_ala_D_alaTIGR D-al 100.0 2.8E-40 6.1E-45 333.3 31.5 296 57-400 1-313 (315)
28 PRK14573 bifunctional D-alanyl 100.0 1.5E-40 3.2E-45 373.1 32.4 311 54-403 450-787 (809)
29 PRK08654 pyruvate carboxylase 100.0 4.7E-39 1E-43 339.9 41.0 388 83-498 3-413 (499)
30 PRK07206 hypothetical protein; 100.0 1.1E-38 2.3E-43 334.0 42.6 396 82-498 2-411 (416)
31 PRK06019 phosphoribosylaminoim 100.0 9.6E-38 2.1E-42 320.8 40.7 361 82-492 2-366 (372)
32 PRK02186 argininosuccinate lya 100.0 1.1E-37 2.5E-42 351.9 43.5 385 82-497 2-395 (887)
33 PRK01372 ddl D-alanine--D-alan 100.0 1.2E-38 2.6E-43 319.7 31.3 286 55-400 4-298 (304)
34 PLN02735 carbamoyl-phosphate s 100.0 8.2E-38 1.8E-42 355.8 41.1 375 82-492 23-419 (1102)
35 TIGR02712 urea_carbox urea car 100.0 9.5E-37 2.1E-41 348.5 44.4 407 83-518 2-438 (1201)
36 COG1181 DdlA D-alanine-D-alani 100.0 2.8E-37 6.1E-42 305.7 27.5 297 54-400 1-314 (317)
37 TIGR01161 purK phosphoribosyla 100.0 2.2E-35 4.9E-40 301.8 39.3 347 84-479 1-352 (352)
38 TIGR01369 CPSaseII_lrg carbamo 100.0 2.3E-35 5E-40 337.2 42.1 375 82-493 6-401 (1050)
39 PRK12999 pyruvate carboxylase; 100.0 3.9E-35 8.4E-40 333.5 43.4 408 82-517 5-449 (1146)
40 PLN02735 carbamoyl-phosphate s 100.0 9.5E-36 2E-40 339.0 38.3 303 81-402 573-902 (1102)
41 TIGR01369 CPSaseII_lrg carbamo 100.0 3.7E-35 8E-40 335.5 42.2 303 81-403 553-868 (1050)
42 PRK12815 carB carbamoyl phosph 100.0 3.1E-35 6.8E-40 336.2 41.2 300 81-402 554-865 (1068)
43 PRK05294 carB carbamoyl phosph 100.0 5.6E-35 1.2E-39 335.3 41.7 300 81-402 553-867 (1066)
44 PRK05294 carB carbamoyl phosph 100.0 2.7E-35 5.8E-40 337.9 38.6 375 82-492 7-402 (1066)
45 PRK12815 carB carbamoyl phosph 100.0 4E-35 8.8E-40 335.3 39.4 375 82-493 7-402 (1068)
46 COG0027 PurT Formate-dependent 100.0 4.5E-34 9.8E-39 268.3 33.9 377 81-497 11-393 (394)
47 COG0439 AccC Biotin carboxylas 100.0 1.1E-33 2.4E-38 289.2 38.9 403 82-515 2-436 (449)
48 TIGR01235 pyruv_carbox pyruvat 100.0 7.7E-34 1.7E-38 321.3 41.4 407 84-517 1-445 (1143)
49 COG0458 CarB Carbamoylphosphat 100.0 9.3E-34 2E-38 279.5 33.6 362 95-493 19-389 (400)
50 PRK12767 carbamoyl phosphate s 100.0 3.1E-33 6.7E-38 283.4 35.2 299 82-415 1-309 (326)
51 COG4770 Acetyl/propionyl-CoA c 100.0 4.2E-31 9.2E-36 266.1 33.2 384 83-499 3-415 (645)
52 COG0026 PurK Phosphoribosylami 100.0 6.8E-30 1.5E-34 249.2 38.9 356 82-492 1-366 (375)
53 PF01071 GARS_A: Phosphoribosy 100.0 6.4E-32 1.4E-36 246.2 22.7 191 187-379 2-193 (194)
54 KOG0370 Multifunctional pyrimi 100.0 2.5E-33 5.4E-38 292.8 9.0 436 20-493 298-770 (1435)
55 PRK06524 biotin carboxylase-li 100.0 3.6E-30 7.7E-35 264.6 31.3 251 137-406 94-357 (493)
56 KOG0238 3-Methylcrotonyl-CoA c 100.0 1.3E-29 2.7E-34 251.2 32.5 387 97-515 13-433 (670)
57 PF15632 ATPgrasp_Ter: ATP-gra 100.0 1.6E-29 3.4E-34 250.0 31.9 282 94-407 11-311 (329)
58 COG1038 PycA Pyruvate carboxyl 100.0 5.2E-29 1.1E-33 257.8 33.8 395 83-517 8-451 (1149)
59 PF07478 Dala_Dala_lig_C: D-al 100.0 2.2E-30 4.7E-35 242.5 18.6 191 194-399 1-202 (203)
60 PRK10446 ribosomal protein S6 100.0 9.2E-28 2E-32 240.0 30.8 265 97-402 18-289 (300)
61 PRK06849 hypothetical protein; 100.0 2.2E-27 4.7E-32 246.1 29.8 269 80-380 2-281 (389)
62 KOG0369 Pyruvate carboxylase [ 100.0 2.3E-26 5.1E-31 233.7 30.5 377 83-499 34-451 (1176)
63 PF02786 CPSase_L_D2: Carbamoy 100.0 1.7E-26 3.6E-31 216.9 23.9 200 187-402 1-206 (211)
64 TIGR00768 rimK_fam alpha-L-glu 99.9 5.3E-24 1.1E-28 210.7 31.1 260 96-398 15-276 (277)
65 TIGR02144 LysX_arch Lysine bio 99.9 6E-24 1.3E-28 210.7 30.8 263 95-402 13-278 (280)
66 PF13535 ATP-grasp_4: ATP-gras 99.9 2E-25 4.3E-30 206.9 18.8 182 184-379 1-183 (184)
67 PRK13278 purP 5-formaminoimida 99.9 1.3E-23 2.7E-28 211.3 30.4 277 82-380 18-318 (358)
68 COG2232 Predicted ATP-dependen 99.9 3.5E-24 7.6E-29 203.3 24.1 348 82-495 11-373 (389)
69 KOG0370 Multifunctional pyrimi 99.9 7.2E-23 1.6E-27 215.0 26.4 309 67-406 910-1235(1435)
70 KOG0368 Acetyl-CoA carboxylase 99.9 7.6E-22 1.6E-26 214.5 32.0 336 133-500 123-521 (2196)
71 PF02222 ATP-grasp: ATP-grasp 99.9 1.7E-21 3.8E-26 176.3 18.9 165 195-384 1-170 (172)
72 PRK13277 5-formaminoimidazole- 99.9 1.6E-20 3.6E-25 185.6 24.4 298 82-402 17-346 (366)
73 COG0189 RimK Glutathione synth 99.8 2.4E-19 5.2E-24 178.4 24.6 229 146-401 77-313 (318)
74 PF02655 ATP-grasp_3: ATP-gras 99.8 5.7E-21 1.2E-25 172.9 10.0 159 185-377 1-160 (161)
75 PF08443 RimK: RimK-like ATP-g 99.8 1.2E-19 2.5E-24 169.1 18.3 185 185-398 1-189 (190)
76 TIGR03103 trio_acet_GNAT GNAT- 99.8 1.3E-18 2.8E-23 186.2 25.7 233 137-399 245-540 (547)
77 COG3919 Predicted ATP-grasp en 99.8 1.3E-18 2.9E-23 162.9 19.6 292 84-403 5-314 (415)
78 COG1821 Predicted ATP-utilizin 99.8 4.7E-19 1E-23 162.8 15.2 210 147-405 73-285 (307)
79 PRK14016 cyanophycin synthetas 99.8 8.7E-18 1.9E-22 185.6 27.5 143 136-287 162-308 (727)
80 TIGR01435 glu_cys_lig_rel glut 99.8 4.1E-17 9E-22 176.7 23.7 199 178-398 466-735 (737)
81 TIGR02068 cya_phycin_syn cyano 99.8 1.4E-16 3.1E-21 179.4 26.0 202 177-400 203-471 (864)
82 PRK02471 bifunctional glutamat 99.8 1.3E-16 2.9E-21 175.6 24.3 241 136-399 434-750 (752)
83 PRK12458 glutathione synthetas 99.7 1.2E-15 2.5E-20 154.3 24.9 204 166-402 109-324 (338)
84 PLN02941 inositol-tetrakisphos 99.7 8.5E-15 1.8E-19 145.5 23.9 205 147-380 66-309 (328)
85 PF02844 GARS_N: Phosphoribosy 99.7 3.7E-16 8E-21 126.6 9.7 99 83-184 1-99 (100)
86 TIGR01380 glut_syn glutathione 99.7 2.3E-14 5E-19 143.7 24.6 221 147-400 78-309 (312)
87 PRK05246 glutathione synthetas 99.7 3.7E-14 8.1E-19 142.7 25.5 223 147-402 79-312 (316)
88 PF02843 GARS_C: Phosphoribosy 99.6 5.2E-15 1.1E-19 120.0 9.6 93 414-510 1-93 (93)
89 TIGR02291 rimK_rel_E_lig alpha 99.5 1.3E-12 2.7E-17 129.1 23.0 211 177-400 27-293 (317)
90 COG1759 5-formaminoimidazole-4 99.4 8.4E-11 1.8E-15 112.3 21.5 280 82-378 18-318 (361)
91 PF14398 ATPgrasp_YheCD: YheC/ 99.3 1.2E-10 2.7E-15 113.6 20.6 192 167-378 4-236 (262)
92 PF01820 Dala_Dala_lig_N: D-al 99.2 2.8E-13 6E-18 115.3 -4.3 100 56-177 1-117 (117)
93 TIGR01016 sucCoAbeta succinyl- 99.1 1.7E-09 3.6E-14 112.1 16.3 101 187-287 4-117 (386)
94 PF02955 GSH-S_ATP: Prokaryoti 99.1 4.7E-09 1E-13 95.1 15.5 146 202-374 12-161 (173)
95 PF14397 ATPgrasp_ST: Sugar-tr 99.1 2.6E-08 5.6E-13 98.4 21.3 93 177-274 16-126 (285)
96 PF05770 Ins134_P3_kin: Inosit 99.0 3.4E-08 7.3E-13 97.2 17.3 208 147-380 52-294 (307)
97 PRK00696 sucC succinyl-CoA syn 98.9 9.6E-09 2.1E-13 106.5 12.6 101 186-286 3-116 (388)
98 PF14305 ATPgrasp_TupA: TupA-l 98.6 2E-06 4.3E-11 82.7 17.3 184 182-379 15-222 (239)
99 PF13549 ATP-grasp_5: ATP-gras 98.5 2.3E-06 4.9E-11 81.1 14.3 102 186-287 10-122 (222)
100 COG0045 SucC Succinyl-CoA synt 98.4 2.7E-06 5.8E-11 84.7 12.4 100 188-287 5-115 (387)
101 PF08442 ATP-grasp_2: ATP-gras 98.4 1.3E-06 2.9E-11 81.4 9.5 100 188-287 4-116 (202)
102 PLN02235 ATP citrate (pro-S)-l 98.2 1.7E-05 3.8E-10 81.0 12.6 99 188-287 8-126 (423)
103 PRK14046 malate--CoA ligase su 98.2 1.9E-05 4E-10 81.6 12.6 99 188-286 5-116 (392)
104 PF00289 CPSase_L_chain: Carba 98.1 4.1E-06 9E-11 70.2 4.5 95 83-182 3-110 (110)
105 PLN00124 succinyl-CoA ligase [ 98.1 3.4E-05 7.4E-10 79.9 11.9 100 186-286 30-151 (422)
106 PF02750 Synapsin_C: Synapsin, 97.7 0.0043 9.2E-08 56.4 17.4 166 178-374 2-177 (203)
107 PF03133 TTL: Tubulin-tyrosine 97.6 0.00022 4.8E-09 71.1 9.4 51 224-283 67-123 (292)
108 PF06973 DUF1297: Domain of un 97.0 0.0061 1.3E-07 54.7 9.8 111 265-378 21-145 (188)
109 KOG3895 Synaptic vesicle prote 96.9 0.0063 1.4E-07 59.6 9.9 199 144-373 152-365 (488)
110 PF14403 CP_ATPgrasp_2: Circul 96.7 0.0083 1.8E-07 62.4 9.2 113 162-287 259-397 (445)
111 KOG1057 Arp2/3 complex-interac 96.2 0.0073 1.6E-07 64.8 5.4 208 148-374 91-322 (1018)
112 PF14243 DUF4343: Domain of un 96.1 0.055 1.2E-06 46.8 9.9 114 223-376 2-117 (130)
113 TIGR00715 precor6x_red precorr 95.2 0.22 4.7E-06 48.5 11.2 118 83-219 1-123 (256)
114 COG1748 LYS9 Saccharopine dehy 95.0 0.061 1.3E-06 55.1 7.1 117 82-205 1-122 (389)
115 KOG2156 Tubulin-tyrosine ligas 94.3 0.3 6.5E-06 50.8 9.8 63 197-274 279-343 (662)
116 COG0505 CarA Carbamoylphosphat 94.2 0.017 3.7E-07 57.4 0.8 30 33-62 326-355 (368)
117 PF11379 DUF3182: Protein of u 93.9 0.59 1.3E-05 46.4 10.6 90 202-294 114-206 (355)
118 KOG2157 Predicted tubulin-tyro 93.6 0.19 4.2E-06 53.0 7.3 52 222-274 199-250 (497)
119 PRK08057 cobalt-precorrin-6x r 92.8 1.2 2.6E-05 43.1 10.9 91 82-175 2-96 (248)
120 KOG2799 Succinyl-CoA synthetas 92.8 0.48 1E-05 47.1 8.1 102 184-285 23-144 (434)
121 COG2099 CobK Precorrin-6x redu 92.7 2.6 5.7E-05 40.3 12.6 123 82-222 2-128 (257)
122 COG1091 RfbD dTDP-4-dehydrorha 91.8 0.79 1.7E-05 45.0 8.3 54 83-153 1-56 (281)
123 PF02785 Biotin_carb_C: Biotin 91.4 0.12 2.6E-06 43.0 1.9 53 466-518 47-104 (107)
124 PLN02819 lysine-ketoglutarate 90.5 1.4 3E-05 51.2 9.9 116 82-204 569-701 (1042)
125 smart00878 Biotin_carb_C Bioti 90.0 0.22 4.8E-06 41.4 2.3 52 466-517 47-103 (107)
126 PF02571 CbiJ: Precorrin-6x re 89.2 2.4 5.3E-05 41.0 9.2 90 83-175 1-97 (249)
127 COG1087 GalE UDP-glucose 4-epi 87.1 1.9 4E-05 42.5 6.8 68 83-153 1-73 (329)
128 PRK05849 hypothetical protein; 85.9 39 0.00084 38.4 17.2 176 184-373 7-214 (783)
129 PF04321 RmlD_sub_bind: RmlD s 85.7 1.9 4.1E-05 42.7 6.4 56 83-153 1-57 (286)
130 COG0569 TrkA K+ transport syst 85.7 3.7 7.9E-05 39.2 8.1 107 83-199 1-113 (225)
131 PF06849 DUF1246: Protein of u 84.4 4.8 0.0001 34.0 7.1 115 86-205 2-122 (124)
132 COG2102 Predicted ATPases of P 84.3 24 0.00051 33.3 12.3 133 84-229 2-142 (223)
133 PLN02771 carbamoyl-phosphate s 83.0 0.59 1.3E-05 48.4 1.4 24 33-56 386-409 (415)
134 PLN02657 3,8-divinyl protochlo 82.1 8.4 0.00018 40.0 9.6 111 41-153 19-142 (390)
135 PF13460 NAD_binding_10: NADH( 81.6 6.3 0.00014 35.6 7.7 65 85-153 1-66 (183)
136 TIGR03025 EPS_sugtrans exopoly 80.2 16 0.00034 38.7 11.1 90 82-175 125-219 (445)
137 TIGR02355 moeB molybdopterin s 79.7 24 0.00052 34.0 11.2 31 82-113 24-54 (240)
138 PRK13303 L-aspartate dehydroge 79.3 16 0.00035 35.7 10.0 113 82-201 1-115 (265)
139 PF13380 CoA_binding_2: CoA bi 79.0 18 0.0004 30.4 9.0 95 83-181 1-112 (116)
140 PLN00016 RNA-binding protein; 78.8 12 0.00025 38.7 9.4 91 81-173 51-158 (378)
141 TIGR03023 WcaJ_sugtrans Undeca 78.7 19 0.00042 38.1 11.2 90 82-175 128-222 (451)
142 KOG1447 GTP-specific succinyl- 78.1 16 0.00035 35.1 9.0 99 188-286 24-142 (412)
143 PRK06179 short chain dehydroge 77.7 9 0.0002 37.1 7.8 70 82-153 4-79 (270)
144 PRK10124 putative UDP-glucose 77.2 22 0.00047 37.9 11.0 87 82-175 143-234 (463)
145 COG1606 ATP-utilizing enzymes 77.0 34 0.00074 33.0 10.8 139 82-233 17-174 (269)
146 PRK00048 dihydrodipicolinate r 76.2 27 0.00059 33.9 10.6 86 82-175 1-88 (257)
147 TIGR02049 gshA_ferroox glutama 76.1 13 0.00029 37.5 8.3 53 225-277 260-315 (403)
148 TIGR01368 CPSaseIIsmall carbam 76.1 1.6 3.4E-05 44.7 1.9 22 33-54 320-341 (358)
149 PRK05472 redox-sensing transcr 75.9 25 0.00054 33.1 10.0 91 81-175 83-174 (213)
150 PF03435 Saccharop_dh: Sacchar 75.8 8.8 0.00019 39.7 7.5 113 85-204 1-120 (386)
151 PRK12475 thiamine/molybdopteri 75.8 21 0.00045 36.3 9.9 33 82-115 24-57 (338)
152 TIGR00268 conserved hypothetic 75.5 31 0.00067 33.4 10.8 138 83-233 13-168 (252)
153 COG0796 MurI Glutamate racemas 75.5 18 0.0004 35.2 8.9 85 82-177 5-97 (269)
154 PRK00865 glutamate racemase; P 75.5 28 0.0006 33.9 10.4 97 82-183 5-102 (261)
155 PLN02778 3,5-epimerase/4-reduc 75.4 13 0.00028 36.9 8.4 55 81-153 8-63 (298)
156 PLN02572 UDP-sulfoquinovose sy 75.1 15 0.00033 38.8 9.2 71 81-153 46-142 (442)
157 PRK08300 acetaldehyde dehydrog 74.8 10 0.00022 37.7 7.2 101 81-181 3-104 (302)
158 TIGR02622 CDP_4_6_dhtase CDP-g 74.7 12 0.00025 38.1 7.9 70 82-153 4-81 (349)
159 PF00070 Pyr_redox: Pyridine n 74.4 11 0.00023 29.1 6.0 59 84-152 1-59 (80)
160 PF01408 GFO_IDH_MocA: Oxidore 73.7 1.4 3.1E-05 36.9 0.8 88 83-175 1-90 (120)
161 cd01483 E1_enzyme_family Super 73.7 25 0.00055 30.5 8.9 28 84-112 1-28 (143)
162 PRK09987 dTDP-4-dehydrorhamnos 73.6 13 0.00029 36.8 7.9 59 83-153 1-60 (299)
163 TIGR02356 adenyl_thiF thiazole 73.6 32 0.0007 32.0 10.0 31 81-112 20-50 (202)
164 TIGR01470 cysG_Nterm siroheme 73.1 27 0.00058 32.7 9.3 33 82-115 9-41 (205)
165 PF00899 ThiF: ThiF family; I 73.1 18 0.00039 31.1 7.7 33 82-115 2-35 (135)
166 PRK07688 thiamine/molybdopteri 72.9 23 0.00049 36.1 9.4 34 81-115 23-57 (339)
167 COG0702 Predicted nucleoside-d 72.6 84 0.0018 30.0 13.3 163 83-255 1-187 (275)
168 PRK12838 carbamoyl phosphate s 72.0 2.2 4.9E-05 43.5 1.9 21 33-53 314-334 (354)
169 PF13727 CoA_binding_3: CoA-bi 71.9 15 0.00032 32.7 7.2 90 82-174 77-171 (175)
170 cd01492 Aos1_SUMO Ubiquitin ac 71.7 23 0.00051 32.9 8.5 71 82-153 21-94 (197)
171 PRK10675 UDP-galactose-4-epime 71.7 14 0.0003 37.1 7.7 69 83-153 1-79 (338)
172 PF07065 D123: D123; InterPro 71.4 1.1E+02 0.0025 30.4 14.5 143 212-378 75-242 (299)
173 COG0512 PabA Anthranilate/para 71.3 2.1 4.5E-05 39.2 1.3 19 34-52 157-175 (191)
174 PF04174 CP_ATPgrasp_1: A circ 70.8 8.4 0.00018 38.9 5.6 100 162-270 222-330 (330)
175 PRK07856 short chain dehydroge 70.8 16 0.00034 35.0 7.5 70 82-153 6-81 (252)
176 PRK08309 short chain dehydroge 70.8 18 0.00039 33.0 7.4 30 83-113 1-30 (177)
177 PRK11579 putative oxidoreducta 70.7 9.2 0.0002 38.9 6.1 142 81-229 3-150 (346)
178 KOG1209 1-Acyl dihydroxyaceton 70.6 18 0.00038 34.0 7.1 112 80-199 5-132 (289)
179 PRK12564 carbamoyl phosphate s 70.1 2.6 5.5E-05 43.2 1.8 22 33-54 324-345 (360)
180 COG1064 AdhP Zn-dependent alco 69.7 30 0.00066 35.0 9.3 151 5-172 98-254 (339)
181 PLN03209 translocon at the inn 69.4 12 0.00027 40.6 6.8 137 8-153 7-165 (576)
182 COG4569 MhpF Acetaldehyde dehy 69.4 12 0.00025 34.6 5.6 91 81-175 3-99 (310)
183 PLN02695 GDP-D-mannose-3',5'-e 69.1 24 0.00051 36.3 8.8 71 79-153 18-91 (370)
184 TIGR01472 gmd GDP-mannose 4,6- 68.9 19 0.00041 36.4 7.9 69 83-153 1-84 (343)
185 cd00755 YgdL_like Family of ac 68.3 17 0.00037 34.7 6.9 31 82-113 11-41 (231)
186 PRK05562 precorrin-2 dehydroge 68.3 21 0.00046 33.9 7.4 87 82-175 25-114 (223)
187 COG2308 Uncharacterized conser 67.9 10 0.00022 39.2 5.5 72 196-274 340-413 (488)
188 KOG2158 Tubulin-tyrosine ligas 67.8 5.5 0.00012 41.2 3.5 44 206-249 210-253 (565)
189 PRK05597 molybdopterin biosynt 67.5 54 0.0012 33.5 10.9 31 82-113 28-58 (355)
190 TIGR00036 dapB dihydrodipicoli 67.2 38 0.00083 33.1 9.4 111 83-202 2-121 (266)
191 PLN02240 UDP-glucose 4-epimera 66.8 30 0.00065 34.9 8.9 70 82-153 5-87 (352)
192 COG2344 AT-rich DNA-binding pr 66.6 33 0.00071 31.5 7.8 90 81-174 83-173 (211)
193 PLN02653 GDP-mannose 4,6-dehyd 66.1 24 0.00053 35.5 8.1 70 82-153 6-89 (340)
194 COG0771 MurD UDP-N-acetylmuram 66.1 44 0.00096 35.3 10.0 92 82-184 7-105 (448)
195 TIGR01214 rmlD dTDP-4-dehydror 65.7 20 0.00043 35.0 7.2 55 84-153 1-56 (287)
196 CHL00197 carA carbamoyl-phosph 65.6 3.3 7.1E-05 42.7 1.5 21 33-53 338-358 (382)
197 PRK05993 short chain dehydroge 65.5 15 0.00033 35.8 6.3 70 82-153 4-82 (277)
198 PRK06398 aldose dehydrogenase; 65.3 28 0.0006 33.5 8.0 67 82-153 6-78 (258)
199 PRK10217 dTDP-glucose 4,6-dehy 65.3 26 0.00056 35.5 8.1 69 83-153 2-80 (355)
200 PF01113 DapB_N: Dihydrodipico 64.7 28 0.0006 29.6 6.9 88 83-175 1-95 (124)
201 PLN02968 Probable N-acetyl-gam 64.3 42 0.00092 34.7 9.4 93 81-175 37-131 (381)
202 TIGR00290 MJ0570_dom MJ0570-re 64.3 1.2E+02 0.0027 28.7 11.8 96 135-232 46-144 (223)
203 cd00757 ThiF_MoeB_HesA_family 64.1 81 0.0018 29.9 10.8 31 82-113 21-51 (228)
204 cd01994 Alpha_ANH_like_IV This 64.0 1.2E+02 0.0027 28.0 13.8 138 84-231 1-146 (194)
205 PRK08762 molybdopterin biosynt 63.8 61 0.0013 33.4 10.5 31 82-113 135-165 (376)
206 COG1648 CysG Siroheme synthase 63.7 73 0.0016 29.9 10.1 88 81-175 11-101 (210)
207 PRK00436 argC N-acetyl-gamma-g 63.7 29 0.00063 35.3 8.0 91 82-176 2-97 (343)
208 TIGR03466 HpnA hopanoid-associ 63.6 24 0.00052 35.0 7.5 67 83-153 1-70 (328)
209 PRK08223 hypothetical protein; 63.3 55 0.0012 32.4 9.5 32 82-114 27-58 (287)
210 PRK08644 thiamine biosynthesis 63.2 72 0.0016 30.0 10.1 30 82-112 28-57 (212)
211 PRK13304 L-aspartate dehydroge 63.1 33 0.00071 33.5 8.0 87 83-176 2-90 (265)
212 cd01485 E1-1_like Ubiquitin ac 62.8 1.1E+02 0.0025 28.2 11.3 32 82-114 19-50 (198)
213 PF01370 Epimerase: NAD depend 62.8 12 0.00025 35.2 4.7 67 85-153 1-71 (236)
214 PF05368 NmrA: NmrA-like famil 62.5 36 0.00078 32.1 8.1 114 85-202 1-137 (233)
215 TIGR03022 WbaP_sugtrans Undeca 62.3 70 0.0015 33.9 11.0 87 82-172 125-216 (456)
216 PRK06719 precorrin-2 dehydroge 62.3 36 0.00079 30.3 7.5 34 81-115 12-45 (157)
217 PRK00421 murC UDP-N-acetylmura 62.3 36 0.00078 36.1 8.8 33 81-114 6-39 (461)
218 TIGR03215 ac_ald_DH_ac acetald 62.2 29 0.00062 34.3 7.4 97 82-181 1-98 (285)
219 PRK05690 molybdopterin biosynt 62.1 79 0.0017 30.4 10.4 32 81-113 31-62 (245)
220 PRK13302 putative L-aspartate 62.1 53 0.0012 32.2 9.3 111 82-201 6-118 (271)
221 PRK08177 short chain dehydroge 62.0 25 0.00053 33.0 6.8 69 83-153 2-77 (225)
222 PF01118 Semialdhyde_dh: Semia 62.0 34 0.00073 28.8 7.0 87 84-177 1-96 (121)
223 PRK07878 molybdopterin biosynt 61.8 88 0.0019 32.5 11.3 31 82-113 42-72 (392)
224 COG3494 Uncharacterized protei 61.8 48 0.001 31.9 8.3 65 84-153 6-74 (279)
225 PRK08857 para-aminobenzoate sy 61.6 4.3 9.3E-05 37.6 1.4 20 33-52 158-177 (193)
226 PRK14106 murD UDP-N-acetylmura 61.4 61 0.0013 34.2 10.3 34 81-115 4-37 (450)
227 PF02629 CoA_binding: CoA bind 61.3 38 0.00083 27.2 6.8 88 81-174 2-89 (96)
228 COG0002 ArgC Acetylglutamate s 61.2 31 0.00067 34.9 7.3 114 82-204 2-122 (349)
229 PRK03659 glutathione-regulated 60.6 16 0.00034 40.4 5.8 112 82-202 400-514 (601)
230 PRK08264 short chain dehydroge 60.4 34 0.00074 32.2 7.5 70 82-153 6-79 (238)
231 PRK02842 light-independent pro 60.4 21 0.00045 37.6 6.5 88 81-174 289-381 (427)
232 PRK05600 thiamine biosynthesis 60.2 66 0.0014 33.1 9.9 31 81-112 40-70 (370)
233 PRK06171 sorbitol-6-phosphate 60.2 42 0.0009 32.3 8.2 69 82-153 9-83 (266)
234 PRK15181 Vi polysaccharide bio 60.0 35 0.00075 34.6 7.9 70 80-153 13-96 (348)
235 TIGR00289 conserved hypothetic 59.5 1.6E+02 0.0035 27.9 12.9 94 134-232 45-143 (222)
236 PF01488 Shikimate_DH: Shikima 59.5 18 0.00039 31.3 4.9 32 81-113 11-42 (135)
237 PRK08340 glucose-1-dehydrogena 59.3 19 0.0004 34.7 5.6 69 83-153 1-82 (259)
238 COG1179 Dinucleotide-utilizing 58.9 65 0.0014 31.0 8.6 29 83-112 31-59 (263)
239 PRK04148 hypothetical protein; 58.8 40 0.00086 29.3 6.8 32 82-115 17-48 (134)
240 COG1086 Predicted nucleoside-d 58.7 69 0.0015 34.7 9.7 91 80-174 114-207 (588)
241 PRK10084 dTDP-glucose 4,6 dehy 58.7 37 0.00081 34.3 7.9 69 83-153 1-79 (352)
242 PRK03202 6-phosphofructokinase 58.4 61 0.0013 32.7 9.1 41 135-177 81-122 (320)
243 PRK05865 hypothetical protein; 58.3 1E+02 0.0023 35.5 11.8 109 83-202 1-120 (854)
244 PRK06182 short chain dehydroge 58.3 19 0.00041 34.9 5.4 70 82-153 3-80 (273)
245 PF08886 GshA: Glutamate-cyste 58.1 8.6 0.00019 39.0 2.9 52 225-276 263-317 (404)
246 PRK15204 undecaprenyl-phosphat 58.0 1.1E+02 0.0023 32.8 11.4 87 82-173 146-236 (476)
247 PRK03562 glutathione-regulated 57.9 22 0.00047 39.4 6.4 113 82-203 400-515 (621)
248 PRK07231 fabG 3-ketoacyl-(acyl 57.6 15 0.00032 34.9 4.4 70 82-153 5-87 (251)
249 TIGR01279 DPOR_bchN light-inde 57.1 30 0.00064 36.2 6.9 87 81-174 273-364 (407)
250 COG0754 Gsp Glutathionylspermi 56.9 8.9 0.00019 38.6 2.7 106 156-274 236-341 (387)
251 CHL00194 ycf39 Ycf39; Provisio 56.8 27 0.00058 34.9 6.3 67 83-153 1-70 (317)
252 TIGR02964 xanthine_xdhC xanthi 56.7 46 0.00099 32.2 7.6 34 81-115 99-132 (246)
253 PRK01710 murD UDP-N-acetylmura 56.6 91 0.002 33.1 10.6 32 82-114 14-45 (458)
254 TIGR03649 ergot_EASG ergot alk 56.6 1.1E+02 0.0023 29.8 10.6 87 84-173 1-98 (285)
255 PRK08328 hypothetical protein; 56.5 1.3E+02 0.0029 28.6 10.8 31 82-113 27-57 (231)
256 PRK08267 short chain dehydroge 56.2 21 0.00046 34.2 5.4 69 83-153 2-83 (260)
257 PRK08220 2,3-dihydroxybenzoate 56.2 44 0.00095 31.7 7.6 70 81-153 7-82 (252)
258 TIGR02990 ectoine_eutA ectoine 55.7 1.1E+02 0.0023 29.4 10.0 59 135-203 166-229 (239)
259 PRK01438 murD UDP-N-acetylmura 55.7 73 0.0016 34.0 9.8 34 81-115 15-48 (480)
260 PF10281 Ish1: Putative stress 55.3 32 0.0007 22.5 4.4 30 188-219 6-35 (38)
261 COG4091 Predicted homoserine d 55.2 34 0.00075 34.5 6.4 141 81-227 16-182 (438)
262 PRK10537 voltage-gated potassi 54.9 49 0.0011 34.4 8.0 111 82-201 240-351 (393)
263 PRK05693 short chain dehydroge 54.7 23 0.00049 34.4 5.3 69 83-153 2-78 (274)
264 TIGR02354 thiF_fam2 thiamine b 54.4 66 0.0014 29.9 8.1 33 82-115 21-54 (200)
265 PRK11908 NAD-dependent epimera 54.0 32 0.00069 34.8 6.5 69 82-153 1-74 (347)
266 TIGR01861 ANFD nitrogenase iro 54.0 69 0.0015 34.6 9.1 86 81-175 327-420 (513)
267 PLN02427 UDP-apiose/xylose syn 53.9 33 0.00071 35.3 6.6 70 81-153 13-92 (386)
268 PRK07577 short chain dehydroge 53.9 51 0.0011 30.8 7.5 66 83-153 4-74 (234)
269 PF03681 UPF0150: Uncharacteri 53.8 13 0.00027 25.7 2.4 21 473-493 24-44 (48)
270 PRK10669 putative cation:proto 53.8 64 0.0014 35.2 9.1 69 82-153 417-487 (558)
271 PRK07578 short chain dehydroge 53.8 54 0.0012 29.9 7.5 59 83-153 1-61 (199)
272 cd01979 Pchlide_reductase_N Pc 53.6 24 0.00051 36.8 5.5 86 81-175 275-367 (396)
273 PRK02472 murD UDP-N-acetylmura 53.5 1.7E+02 0.0037 30.7 12.1 32 82-114 5-36 (447)
274 cd01491 Ube1_repeat1 Ubiquitin 53.4 61 0.0013 32.1 8.0 33 82-115 19-51 (286)
275 cd01075 NAD_bind_Leu_Phe_Val_D 53.1 57 0.0012 30.3 7.5 110 81-204 27-137 (200)
276 COG0300 DltE Short-chain dehyd 53.0 19 0.00041 35.1 4.3 71 81-153 5-90 (265)
277 COG2910 Putative NADH-flavin r 52.8 52 0.0011 30.3 6.6 67 83-153 1-68 (211)
278 PF03808 Glyco_tran_WecB: Glyc 52.8 1.6E+02 0.0034 26.6 10.2 104 82-199 48-155 (172)
279 TIGR01181 dTDP_gluc_dehyt dTDP 52.8 42 0.0009 33.0 7.0 69 84-153 1-79 (317)
280 cd00763 Bacterial_PFK Phosphof 52.7 70 0.0015 32.2 8.4 39 136-176 81-120 (317)
281 PRK09186 flagellin modificatio 52.6 44 0.00094 31.8 6.9 71 81-153 3-89 (256)
282 PRK10538 malonic semialdehyde 52.6 29 0.00063 33.0 5.6 69 83-153 1-80 (248)
283 PRK07023 short chain dehydroge 52.5 52 0.0011 31.1 7.4 69 83-153 2-83 (243)
284 PRK07454 short chain dehydroge 52.4 28 0.00061 32.8 5.5 70 82-153 6-89 (241)
285 PRK06523 short chain dehydroge 52.2 60 0.0013 31.0 7.8 69 82-153 9-83 (260)
286 cd01995 ExsB ExsB is a transcr 52.1 1.1E+02 0.0024 27.2 9.1 28 84-112 1-29 (169)
287 PLN02889 oxo-acid-lyase/anthra 51.8 7.9 0.00017 44.4 1.7 19 34-52 301-319 (918)
288 PRK07326 short chain dehydroge 51.6 28 0.0006 32.7 5.3 70 82-153 6-88 (237)
289 PRK09009 C factor cell-cell si 51.6 66 0.0014 30.1 7.9 70 83-153 1-73 (235)
290 COG0673 MviM Predicted dehydro 51.4 41 0.00089 33.7 6.8 143 81-228 2-152 (342)
291 PRK07774 short chain dehydroge 51.2 46 0.00099 31.5 6.8 70 82-153 6-89 (250)
292 TIGR01851 argC_other N-acetyl- 51.0 1.1E+02 0.0023 30.8 9.2 75 83-175 2-77 (310)
293 PLN00198 anthocyanidin reducta 50.8 43 0.00093 33.6 6.8 69 81-153 8-86 (338)
294 PRK07831 short chain dehydroge 50.7 38 0.00083 32.5 6.2 34 80-114 15-50 (262)
295 PRK02261 methylaspartate mutas 50.3 1.7E+02 0.0037 25.4 12.0 64 136-201 43-114 (137)
296 TIGR01921 DAP-DH diaminopimela 50.2 97 0.0021 31.3 8.9 86 82-177 3-90 (324)
297 PRK12745 3-ketoacyl-(acyl-carr 50.2 57 0.0012 31.0 7.3 69 83-153 3-86 (256)
298 PF13478 XdhC_C: XdhC Rossmann 50.1 46 0.00099 28.9 5.8 31 85-116 1-31 (136)
299 PRK06194 hypothetical protein; 50.1 36 0.00077 33.2 5.9 70 82-153 6-89 (287)
300 PRK07102 short chain dehydroge 49.9 32 0.0007 32.5 5.4 69 83-153 2-82 (243)
301 PRK00536 speE spermidine synth 49.9 78 0.0017 30.9 8.0 30 81-113 72-101 (262)
302 PRK08278 short chain dehydroge 49.8 70 0.0015 31.0 7.9 33 82-115 6-39 (273)
303 PRK05565 fabG 3-ketoacyl-(acyl 49.7 26 0.00056 33.1 4.7 70 82-153 5-89 (247)
304 PRK12384 sorbitol-6-phosphate 49.4 38 0.00082 32.4 5.9 70 82-153 2-87 (259)
305 PRK12829 short chain dehydroge 49.4 21 0.00046 34.2 4.1 71 81-153 10-92 (264)
306 PRK08265 short chain dehydroge 49.2 38 0.00083 32.6 5.9 70 82-153 6-86 (261)
307 PRK15116 sulfur acceptor prote 49.1 57 0.0012 32.0 6.9 30 82-112 30-59 (268)
308 PRK05884 short chain dehydroge 49.1 27 0.00059 32.8 4.7 69 83-153 1-75 (223)
309 KOG1201 Hydroxysteroid 17-beta 49.0 35 0.00075 33.8 5.3 70 82-153 38-120 (300)
310 PRK06057 short chain dehydroge 48.7 29 0.00062 33.2 4.9 71 81-153 6-85 (255)
311 cd01489 Uba2_SUMO Ubiquitin ac 48.6 1.4E+02 0.003 30.0 9.8 30 84-114 1-30 (312)
312 CHL00073 chlN photochlorophyll 48.5 61 0.0013 34.4 7.5 85 82-174 314-412 (457)
313 PRK09135 pteridine reductase; 48.4 66 0.0014 30.2 7.4 70 82-153 6-91 (249)
314 PRK12937 short chain dehydroge 48.3 53 0.0012 30.9 6.7 71 81-153 4-89 (245)
315 PRK12939 short chain dehydroge 48.1 40 0.00087 31.8 5.8 70 82-153 7-90 (250)
316 PRK07890 short chain dehydroge 48.1 37 0.0008 32.3 5.6 71 81-153 4-88 (258)
317 PRK05557 fabG 3-ketoacyl-(acyl 48.0 68 0.0015 30.0 7.4 71 81-153 4-89 (248)
318 PRK12825 fabG 3-ketoacyl-(acyl 48.0 58 0.0013 30.5 6.9 70 82-153 6-90 (249)
319 TIGR01284 alt_nitrog_alph nitr 48.0 72 0.0016 33.9 8.1 88 81-175 324-417 (457)
320 PRK08007 para-aminobenzoate sy 47.9 10 0.00022 35.0 1.4 20 33-52 153-172 (187)
321 PRK05717 oxidoreductase; Valid 47.9 50 0.0011 31.5 6.5 70 82-153 10-90 (255)
322 cd01965 Nitrogenase_MoFe_beta_ 47.8 1.1E+02 0.0024 32.1 9.5 87 81-175 298-393 (428)
323 cd01484 E1-2_like Ubiquitin ac 47.7 1.2E+02 0.0025 29.1 8.7 29 84-113 1-29 (234)
324 cd01487 E1_ThiF_like E1_ThiF_l 47.4 91 0.002 28.2 7.7 31 84-115 1-32 (174)
325 PF13241 NAD_binding_7: Putati 47.3 26 0.00057 28.6 3.8 83 81-175 6-89 (103)
326 cd03466 Nitrogenase_NifN_2 Nit 47.2 67 0.0015 33.8 7.7 87 82-175 300-394 (429)
327 COG0240 GpsA Glycerol-3-phosph 47.2 1.1E+02 0.0024 30.8 8.7 31 82-113 1-31 (329)
328 TIGR01179 galE UDP-glucose-4-e 47.1 58 0.0013 32.1 7.1 68 84-153 1-76 (328)
329 PLN02253 xanthoxin dehydrogena 47.0 40 0.00086 32.7 5.7 71 81-153 17-100 (280)
330 PRK12429 3-hydroxybutyrate deh 46.8 47 0.001 31.5 6.1 70 82-153 4-87 (258)
331 PRK05867 short chain dehydroge 46.8 37 0.00081 32.4 5.4 70 82-153 9-92 (253)
332 TIGR00566 trpG_papA glutamine 46.8 10 0.00022 34.9 1.4 19 34-52 155-173 (188)
333 PF02254 TrkA_N: TrkA-N domain 46.8 34 0.00074 28.2 4.5 82 85-169 1-85 (116)
334 PLN02260 probable rhamnose bio 46.7 53 0.0012 36.7 7.3 54 82-153 380-434 (668)
335 PRK06079 enoyl-(acyl carrier p 46.5 42 0.00091 32.1 5.7 71 81-153 6-89 (252)
336 PRK07411 hypothetical protein; 46.5 1.9E+02 0.004 30.1 10.7 31 82-113 38-68 (390)
337 COG0482 TrmU Predicted tRNA(5- 46.3 1.2E+02 0.0026 31.0 8.8 107 81-195 2-109 (356)
338 PRK07806 short chain dehydroge 46.3 71 0.0015 30.1 7.3 70 82-153 6-90 (248)
339 PRK14477 bifunctional nitrogen 46.3 84 0.0018 36.7 8.9 87 81-175 319-411 (917)
340 PRK05875 short chain dehydroge 46.2 39 0.00085 32.7 5.5 70 82-153 7-92 (276)
341 COG0289 DapB Dihydrodipicolina 46.1 2.9E+02 0.0064 26.9 12.1 31 82-112 2-33 (266)
342 PF00117 GATase: Glutamine ami 46.1 5.9 0.00013 36.4 -0.4 23 33-55 157-179 (192)
343 COG0205 PfkA 6-phosphofructoki 45.9 1.2E+02 0.0026 30.9 8.9 41 136-177 83-124 (347)
344 PLN02896 cinnamyl-alcohol dehy 45.8 42 0.00091 34.0 5.9 68 82-153 10-85 (353)
345 PRK14851 hypothetical protein; 45.8 1.6E+02 0.0034 33.1 10.6 31 82-113 43-73 (679)
346 PRK08219 short chain dehydroge 45.6 37 0.00081 31.5 5.1 69 82-153 3-77 (227)
347 PRK06138 short chain dehydroge 45.2 47 0.001 31.4 5.8 70 82-153 5-87 (252)
348 PRK12828 short chain dehydroge 45.2 55 0.0012 30.5 6.2 70 82-153 7-88 (239)
349 PRK05866 short chain dehydroge 45.0 52 0.0011 32.5 6.2 70 82-153 40-123 (293)
350 PRK00141 murD UDP-N-acetylmura 45.0 42 0.00091 35.8 5.8 34 79-113 12-45 (473)
351 PRK06181 short chain dehydroge 44.9 35 0.00077 32.7 4.9 69 83-153 2-84 (263)
352 COG1181 DdlA D-alanine-D-alani 44.7 0.69 1.5E-05 46.5 -7.3 95 185-283 49-148 (317)
353 TIGR00067 glut_race glutamate 44.6 1.7E+02 0.0037 28.3 9.5 89 85-178 1-92 (251)
354 PRK06940 short chain dehydroge 44.6 39 0.00085 32.9 5.2 31 82-114 2-32 (275)
355 PRK06196 oxidoreductase; Provi 44.5 35 0.00077 33.9 5.0 70 82-153 26-105 (315)
356 PRK12748 3-ketoacyl-(acyl-carr 44.3 59 0.0013 31.0 6.4 31 82-113 5-38 (256)
357 PRK08628 short chain dehydroge 44.2 82 0.0018 30.0 7.4 70 82-153 7-89 (258)
358 PRK05876 short chain dehydroge 44.2 38 0.00081 33.1 5.0 71 81-153 5-89 (275)
359 PF10087 DUF2325: Uncharacteri 44.2 1.6E+02 0.0035 23.5 8.0 29 147-175 48-79 (97)
360 PRK07063 short chain dehydroge 44.2 58 0.0013 31.1 6.3 70 82-153 7-92 (260)
361 TIGR01850 argC N-acetyl-gamma- 44.1 1.3E+02 0.0029 30.6 9.1 88 83-175 1-96 (346)
362 PRK07067 sorbitol dehydrogenas 43.8 52 0.0011 31.4 5.9 70 82-153 6-86 (257)
363 PLN02871 UDP-sulfoquinovose:DA 43.7 2.9E+02 0.0062 29.2 12.0 80 95-175 81-172 (465)
364 PRK06463 fabG 3-ketoacyl-(acyl 43.7 51 0.0011 31.4 5.8 70 82-153 7-85 (255)
365 PRK07814 short chain dehydroge 43.7 51 0.0011 31.7 5.8 71 81-153 9-93 (263)
366 PRK13394 3-hydroxybutyrate deh 43.6 41 0.00089 32.1 5.1 70 82-153 7-90 (262)
367 PRK06947 glucose-1-dehydrogena 43.5 52 0.0011 31.1 5.8 70 82-153 2-86 (248)
368 PLN02927 antheraxanthin epoxid 43.5 35 0.00077 38.0 5.1 33 81-114 80-112 (668)
369 PRK06935 2-deoxy-D-gluconate 3 43.3 74 0.0016 30.4 6.9 71 81-153 14-97 (258)
370 PRK06774 para-aminobenzoate sy 43.3 14 0.0003 34.1 1.7 20 33-52 157-176 (191)
371 PRK07523 gluconate 5-dehydroge 43.0 29 0.00062 33.2 3.9 71 81-153 9-93 (255)
372 PRK12744 short chain dehydroge 43.0 89 0.0019 29.8 7.4 70 82-153 8-95 (257)
373 PRK07453 protochlorophyllide o 42.9 63 0.0014 32.2 6.6 70 82-153 6-89 (322)
374 PRK06200 2,3-dihydroxy-2,3-dih 42.9 36 0.00079 32.6 4.7 71 81-153 5-86 (263)
375 PRK07478 short chain dehydroge 42.8 52 0.0011 31.3 5.7 70 82-153 6-89 (254)
376 PRK08217 fabG 3-ketoacyl-(acyl 42.3 54 0.0012 30.9 5.7 70 82-153 5-88 (253)
377 PRK04663 murD UDP-N-acetylmura 41.9 2.6E+02 0.0056 29.4 11.2 32 83-114 8-40 (438)
378 PRK06841 short chain dehydroge 41.7 44 0.00096 31.8 5.0 70 82-153 15-95 (255)
379 TIGR01832 kduD 2-deoxy-D-gluco 41.6 52 0.0011 31.1 5.5 71 81-153 4-86 (248)
380 PLN02172 flavin-containing mon 41.6 44 0.00096 35.5 5.4 37 78-115 6-42 (461)
381 PRK07904 short chain dehydroge 41.6 1.2E+02 0.0026 29.0 8.0 34 81-114 7-41 (253)
382 PF10727 Rossmann-like: Rossma 41.5 9.1 0.0002 32.9 0.1 32 81-113 9-40 (127)
383 PRK12742 oxidoreductase; Provi 41.5 60 0.0013 30.4 5.8 70 82-153 6-81 (237)
384 PRK08063 enoyl-(acyl carrier p 41.2 64 0.0014 30.5 6.0 69 83-153 5-88 (250)
385 PRK05878 pyruvate phosphate di 41.2 5E+02 0.011 28.2 13.7 21 351-373 276-296 (530)
386 PRK10637 cysG siroheme synthas 41.1 85 0.0019 33.3 7.4 34 81-115 11-44 (457)
387 PRK14852 hypothetical protein; 40.9 1.9E+02 0.0042 33.7 10.4 32 82-114 332-363 (989)
388 PRK08643 acetoin reductase; Va 40.9 59 0.0013 30.9 5.8 69 83-153 3-85 (256)
389 PRK12446 undecaprenyldiphospho 40.8 1.3E+02 0.0027 30.7 8.4 31 83-114 2-37 (352)
390 COG0451 WcaG Nucleoside-diphos 40.8 98 0.0021 30.3 7.5 67 84-153 2-70 (314)
391 PRK06701 short chain dehydroge 40.8 1.1E+02 0.0025 29.9 7.9 70 82-153 46-130 (290)
392 PRK06113 7-alpha-hydroxysteroi 40.8 58 0.0013 31.0 5.7 71 81-153 10-94 (255)
393 PRK12826 3-ketoacyl-(acyl-carr 40.7 67 0.0014 30.2 6.1 70 82-153 6-89 (251)
394 PRK06847 hypothetical protein; 40.6 46 0.00099 33.9 5.2 33 81-114 3-35 (375)
395 PRK01368 murD UDP-N-acetylmura 40.6 2.2E+02 0.0048 30.2 10.4 30 82-113 6-35 (454)
396 PF04174 CP_ATPgrasp_1: A circ 40.6 43 0.00094 33.8 4.8 26 352-378 70-95 (330)
397 PRK05329 anaerobic glycerol-3- 40.5 91 0.002 32.8 7.4 33 82-115 2-34 (422)
398 PRK08017 oxidoreductase; Provi 40.3 61 0.0013 30.7 5.8 31 83-114 3-34 (256)
399 TIGR03325 BphB_TodD cis-2,3-di 40.3 50 0.0011 31.7 5.2 70 82-153 5-85 (262)
400 PRK07074 short chain dehydroge 40.0 43 0.00092 32.0 4.6 69 83-153 3-83 (257)
401 cd01976 Nitrogenase_MoFe_alpha 39.9 75 0.0016 33.4 6.7 86 81-175 299-391 (421)
402 PRK06197 short chain dehydroge 39.9 55 0.0012 32.3 5.5 70 82-153 16-101 (306)
403 PRK08085 gluconate 5-dehydroge 39.6 74 0.0016 30.3 6.2 71 81-153 8-92 (254)
404 PRK07024 short chain dehydroge 39.5 46 0.001 31.8 4.8 69 83-153 3-84 (257)
405 PRK06180 short chain dehydroge 39.3 58 0.0013 31.6 5.5 70 82-153 4-84 (277)
406 PRK08936 glucose-1-dehydrogena 39.3 76 0.0017 30.3 6.3 71 81-153 6-91 (261)
407 PRK08642 fabG 3-ketoacyl-(acyl 39.3 65 0.0014 30.5 5.7 71 81-153 4-87 (253)
408 PRK07576 short chain dehydroge 39.2 63 0.0014 31.1 5.7 70 82-153 9-92 (264)
409 PRK02705 murD UDP-N-acetylmura 39.1 2.5E+02 0.0054 29.6 10.7 30 84-114 2-31 (459)
410 PRK12824 acetoacetyl-CoA reduc 39.1 97 0.0021 29.0 6.9 69 83-153 3-86 (245)
411 PLN02662 cinnamyl-alcohol dehy 39.1 85 0.0019 31.0 6.8 67 83-153 5-82 (322)
412 PRK05653 fabG 3-ketoacyl-(acyl 39.0 1.1E+02 0.0023 28.6 7.2 70 82-153 5-88 (246)
413 TIGR01501 MthylAspMutase methy 38.9 2.6E+02 0.0056 24.2 11.7 64 136-201 41-112 (134)
414 TIGR03693 ocin_ThiF_like putat 38.8 1.4E+02 0.003 32.9 8.4 87 82-171 129-231 (637)
415 PRK06128 oxidoreductase; Provi 38.7 1.1E+02 0.0023 30.2 7.4 70 82-153 55-140 (300)
416 PLN02214 cinnamoyl-CoA reducta 38.6 95 0.0021 31.4 7.1 69 81-153 9-87 (342)
417 PRK03673 hypothetical protein; 38.6 4.8E+02 0.01 27.2 12.1 50 134-187 45-102 (396)
418 PRK13397 3-deoxy-7-phosphohept 38.5 3.5E+02 0.0076 26.2 10.4 99 155-275 64-162 (250)
419 COG1598 Predicted nuclease of 38.5 26 0.00055 26.8 2.2 22 472-493 25-46 (73)
420 PRK06114 short chain dehydroge 38.5 1.4E+02 0.003 28.4 7.9 70 82-153 8-92 (254)
421 PRK07666 fabG 3-ketoacyl-(acyl 38.5 52 0.0011 31.0 4.9 70 82-153 7-90 (239)
422 PRK08213 gluconate 5-dehydroge 38.4 52 0.0011 31.5 4.9 70 82-153 12-95 (259)
423 PRK07533 enoyl-(acyl carrier p 38.2 1E+02 0.0023 29.5 7.1 32 82-114 10-44 (258)
424 PRK09496 trkA potassium transp 38.2 70 0.0015 33.7 6.3 90 83-175 1-95 (453)
425 PRK12743 oxidoreductase; Provi 38.2 1.1E+02 0.0025 29.0 7.3 70 82-153 2-86 (256)
426 PRK14665 mnmA tRNA-specific 2- 38.1 2.9E+02 0.0063 28.3 10.4 109 81-201 4-115 (360)
427 COG1832 Predicted CoA-binding 38.0 1.4E+02 0.003 26.0 6.7 33 82-115 16-52 (140)
428 PF02737 3HCDH_N: 3-hydroxyacy 38.0 49 0.0011 30.2 4.4 31 84-115 1-31 (180)
429 PRK04308 murD UDP-N-acetylmura 37.8 1.9E+02 0.0042 30.4 9.5 32 82-114 5-36 (445)
430 PRK06718 precorrin-2 dehydroge 37.8 54 0.0012 30.6 4.7 34 81-115 9-42 (202)
431 PRK12481 2-deoxy-D-gluconate 3 37.8 83 0.0018 30.0 6.2 70 82-153 8-89 (251)
432 PRK14027 quinate/shikimate deh 37.7 46 0.00099 32.9 4.4 31 82-113 127-157 (283)
433 PRK06500 short chain dehydroge 37.7 52 0.0011 31.1 4.8 70 82-153 6-86 (249)
434 PRK06483 dihydromonapterin red 37.7 68 0.0015 30.1 5.6 70 82-153 2-80 (236)
435 PRK08163 salicylate hydroxylas 37.6 53 0.0011 33.8 5.1 33 81-114 3-35 (396)
436 TIGR03206 benzo_BadH 2-hydroxy 37.5 52 0.0011 31.1 4.7 70 82-153 3-86 (250)
437 PTZ00318 NADH dehydrogenase-li 37.4 51 0.0011 34.6 5.0 39 77-116 5-43 (424)
438 PLN00200 argininosuccinate syn 37.4 2.5E+02 0.0055 29.3 9.9 66 162-231 104-176 (404)
439 PRK08416 7-alpha-hydroxysteroi 37.3 1E+02 0.0023 29.4 6.9 31 82-113 8-39 (260)
440 PRK12823 benD 1,6-dihydroxycyc 37.1 78 0.0017 30.2 5.9 70 82-153 8-90 (260)
441 COG0505 CarA Carbamoylphosphat 37.0 2.8E+02 0.0061 28.3 9.6 29 82-112 179-207 (368)
442 cd01744 GATase1_CPSase Small c 37.0 18 0.00039 32.9 1.3 21 33-53 145-165 (178)
443 PRK07097 gluconate 5-dehydroge 36.9 70 0.0015 30.7 5.6 70 82-153 10-93 (265)
444 PRK08818 prephenate dehydrogen 36.8 2.3E+02 0.005 29.2 9.4 35 81-115 3-38 (370)
445 TIGR01283 nifE nitrogenase mol 36.8 1.3E+02 0.0027 32.0 7.9 87 81-175 325-417 (456)
446 PLN02335 anthranilate synthase 36.7 19 0.00041 34.2 1.4 20 33-52 177-197 (222)
447 COG1086 Predicted nucleoside-d 36.6 1.2E+02 0.0027 32.8 7.5 71 81-153 249-331 (588)
448 cd01076 NAD_bind_1_Glu_DH NAD( 36.6 1.7E+02 0.0037 27.8 8.0 33 82-115 31-63 (227)
449 PRK05671 aspartate-semialdehyd 36.6 3E+02 0.0066 27.9 10.2 88 81-176 3-95 (336)
450 PRK00726 murG undecaprenyldiph 36.5 1.7E+02 0.0037 29.4 8.7 36 138-175 82-118 (357)
451 PRK07649 para-aminobenzoate/an 36.5 19 0.00042 33.4 1.4 20 33-52 153-172 (195)
452 PRK06505 enoyl-(acyl carrier p 36.5 1.3E+02 0.0029 29.1 7.5 32 81-113 6-40 (271)
453 cd01486 Apg7 Apg7 is an E1-lik 36.4 3E+02 0.0065 27.5 9.7 30 84-114 1-30 (307)
454 PLN02989 cinnamyl-alcohol dehy 36.4 1.2E+02 0.0026 30.1 7.4 68 82-153 5-83 (325)
455 PRK08226 short chain dehydroge 36.2 85 0.0018 30.0 6.1 71 81-153 5-88 (263)
456 PRK06172 short chain dehydroge 36.2 63 0.0014 30.7 5.1 71 81-153 6-90 (253)
457 PRK06139 short chain dehydroge 36.2 79 0.0017 31.9 6.0 70 82-153 7-90 (330)
458 PRK12409 D-amino acid dehydrog 36.1 53 0.0012 34.0 4.9 33 83-116 2-34 (410)
459 PRK08594 enoyl-(acyl carrier p 36.1 1.3E+02 0.0029 28.7 7.4 31 82-113 7-40 (257)
460 PRK08862 short chain dehydroge 36.0 91 0.002 29.4 6.1 31 82-113 5-36 (227)
461 PF01902 ATP_bind_4: ATP-bindi 35.9 1.7E+02 0.0038 27.6 7.8 88 139-231 50-143 (218)
462 COG0063 Predicted sugar kinase 35.7 4.5E+02 0.0097 26.0 11.3 83 143-230 97-198 (284)
463 TIGR01282 nifD nitrogenase mol 35.7 51 0.0011 35.2 4.7 85 81-174 334-425 (466)
464 PRK08277 D-mannonate oxidoredu 35.6 72 0.0016 30.8 5.5 70 82-153 10-93 (278)
465 PRK05650 short chain dehydroge 35.6 91 0.002 30.0 6.2 69 83-153 1-83 (270)
466 TIGR03013 EpsB_2 sugar transfe 35.6 3.1E+02 0.0067 28.9 10.6 89 82-175 124-217 (442)
467 cd01488 Uba3_RUB Ubiquitin act 35.5 1.4E+02 0.003 29.7 7.3 29 84-113 1-29 (291)
468 PRK06482 short chain dehydroge 35.5 69 0.0015 30.9 5.4 69 83-153 3-82 (276)
469 COG2179 Predicted hydrolase of 35.5 3.1E+02 0.0068 24.8 8.7 126 99-243 21-153 (175)
470 PRK06753 hypothetical protein; 35.5 55 0.0012 33.3 4.8 31 83-114 1-31 (373)
471 PRK07060 short chain dehydroge 35.4 52 0.0011 30.9 4.4 70 82-153 9-83 (245)
472 PRK06953 short chain dehydroge 35.3 92 0.002 28.9 6.0 69 83-153 2-76 (222)
473 PRK05854 short chain dehydroge 35.3 73 0.0016 31.7 5.5 32 82-114 14-46 (313)
474 PLN02260 probable rhamnose bio 35.2 1.4E+02 0.003 33.4 8.3 73 80-153 4-86 (668)
475 COG0169 AroE Shikimate 5-dehyd 35.2 54 0.0012 32.4 4.4 30 82-112 126-155 (283)
476 PF01494 FAD_binding_3: FAD bi 34.9 53 0.0012 32.7 4.6 32 83-115 2-33 (356)
477 PLN00141 Tic62-NAD(P)-related 34.8 1.2E+02 0.0026 28.9 6.8 32 81-113 16-48 (251)
478 PRK09134 short chain dehydroge 34.8 1.1E+02 0.0024 29.1 6.7 70 82-153 9-93 (258)
479 PRK14478 nitrogenase molybdenu 34.7 1.6E+02 0.0035 31.5 8.3 87 81-175 323-415 (475)
480 PRK09072 short chain dehydroge 34.7 62 0.0014 31.0 4.8 70 82-153 5-86 (263)
481 PRK07832 short chain dehydroge 34.6 73 0.0016 30.8 5.3 70 83-153 1-84 (272)
482 PRK06949 short chain dehydroge 34.6 67 0.0014 30.5 5.0 70 82-153 9-92 (258)
483 TIGR01285 nifN nitrogenase mol 34.4 2E+02 0.0043 30.3 8.8 84 82-175 311-395 (432)
484 PRK08125 bifunctional UDP-gluc 34.4 1E+02 0.0022 34.5 7.0 70 81-153 314-388 (660)
485 cd00316 Oxidoreductase_nitroge 34.4 2.1E+02 0.0046 29.4 9.1 85 82-175 279-370 (399)
486 cd06281 PBP1_LacI_like_5 Ligan 34.3 1.2E+02 0.0026 28.9 6.8 40 137-176 45-84 (269)
487 PRK12827 short chain dehydroge 34.0 1.3E+02 0.0028 28.2 6.9 31 82-113 6-37 (249)
488 PRK04527 argininosuccinate syn 34.0 3.7E+02 0.008 28.0 10.4 31 83-113 3-33 (400)
489 PRK07825 short chain dehydroge 34.0 71 0.0015 30.8 5.1 70 82-153 5-84 (273)
490 PRK07236 hypothetical protein; 34.0 63 0.0014 33.2 5.0 33 82-115 6-38 (386)
491 PLN00093 geranylgeranyl diphos 34.0 73 0.0016 33.8 5.5 34 81-115 38-71 (450)
492 PLN02650 dihydroflavonol-4-red 33.9 1.4E+02 0.003 30.1 7.4 69 81-153 4-83 (351)
493 cd01990 Alpha_ANH_like_I This 33.7 3.7E+02 0.0081 24.5 9.9 24 210-233 133-156 (202)
494 PRK07775 short chain dehydroge 33.5 81 0.0017 30.6 5.4 71 81-153 9-93 (274)
495 PRK06249 2-dehydropantoate 2-r 33.5 67 0.0015 32.1 4.9 34 81-115 4-37 (313)
496 PRK07035 short chain dehydroge 33.3 62 0.0013 30.7 4.5 70 82-153 8-91 (252)
497 TIGR03589 PseB UDP-N-acetylglu 33.3 85 0.0018 31.4 5.7 69 82-153 4-80 (324)
498 PRK05872 short chain dehydroge 33.3 92 0.002 30.6 5.9 71 81-153 8-91 (296)
499 PRK07370 enoyl-(acyl carrier p 33.3 2E+02 0.0043 27.5 8.1 70 82-153 6-93 (258)
500 PRK03670 competence damage-ind 33.2 4.3E+02 0.0093 25.6 10.2 52 134-189 44-104 (252)
No 1
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-67 Score=519.16 Aligned_cols=427 Identities=59% Similarity=0.937 Sum_probs=394.1
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
|||||||+|+|||+++|+|+++.-+..+++.|.|+++........+ ..+ .|.+.|.+++++.++|.+|+|+|.+++.+
T Consensus 1 mkVLviGsGgREHAiA~~la~s~~v~~~~~apgN~G~a~~~~~~~~-~~~-~~~~~lv~fA~~~~idl~vVGPE~pL~~G 78 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTALEAYLVNI-EID-TDHEALVAFAKEKNVDLVVVGPEAPLVAG 78 (428)
T ss_pred CeEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCCccchhhhhccC-ccc-cCHHHHHHHHHHcCCCEEEECCcHHHhhh
Confidence 6899999999999999999998777788889999998753222222 233 68999999999999999999999999999
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeC
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAM 242 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~ 242 (519)
+.+.|++.|||++||+.+++++..+|..+|++++++|||++.|..+++.+++.+++++.+.|+||||....+++||.++.
T Consensus 79 vvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~ 158 (428)
T COG0151 79 VVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAM 158 (428)
T ss_pred hHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHcCCCEEEecccccCCCCeEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCC
Q 010065 243 TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVL 322 (519)
Q Consensus 243 ~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l 322 (519)
+.+|..+++.+++....|++...+++||||++|.|+|+.+++||+.+++++..++|++.++++.+|++|+|+.+.|++.+
T Consensus 159 ~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQDhKra~dgD~GPNTGGMGaysp~P~~ 238 (428)
T COG0151 159 TLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFI 238 (428)
T ss_pred CHHHHHHHHHHHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECccccccccccCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999998777774457899999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 323 TKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 323 ~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
+++..+++.+.+++++++.+.+.|..|.|+....||++++| |++||.|.|+|.+.++.+++.+-.||.+++.+.+.|+
T Consensus 239 t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G--PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~ 316 (428)
T COG0151 239 TDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG--PKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDGK 316 (428)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC--cEEEEEecccCChhHHHHHHhccccHHHHHHHHHhCC
Confidence 99999999989999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCCCCc-ccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHH
Q 010065 403 LTGVTL-NWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVE 481 (519)
Q Consensus 403 ~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ 481 (519)
+..... .|.+++++.+++++.|||..+.++..|.+.++... .+..+||++......+.+.++++|+..|+++|+|.+
T Consensus 317 L~~~~~~~~~~~a~v~vvlA~~GYP~~~~kG~~I~~~~~~~~--~~~~vf~Agv~~~~~~~lvt~GgRvL~v~~~g~t~~ 394 (428)
T COG0151 317 LDEVEILFWDKGAAVGVVLAAEGYPGDPEKGDVITGDEEAEE--EGAKVFHAGVKLDDGGQLVTSGGRVLAVVGTGDTLE 394 (428)
T ss_pred ccccchhhccCCceEEEEEecCCCCCCCCCCCEEecChhhcc--cCcEEEEeeEeccCCceEEecCCeEEEEEecCCCHH
Confidence 888764 45556999999999999999999999999876432 268899999887444579999999999999999999
Q ss_pred HHHHHHHHHhhccccCCeeecccccccccccccc
Q 010065 482 EAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQF 515 (519)
Q Consensus 482 ea~~~a~~~~~~i~~~g~~~r~dig~~~~~~~~~ 515 (519)
||+++|+++++.|.++|.|||+|||.+.+.++++
T Consensus 395 eA~~~ay~~~~~i~~~g~~yRkDIG~~a~~~~~~ 428 (428)
T COG0151 395 EAQEKAYEALEKIHFDGLFYRKDIGSRALERKRI 428 (428)
T ss_pred HHHHHHHHHHhhcCCCCceeecccchhhhhhhcC
Confidence 9999999999999999999999999999988763
No 2
>PLN02257 phosphoribosylamine--glycine ligase
Probab=100.00 E-value=1.8e-67 Score=546.76 Aligned_cols=429 Identities=83% Similarity=1.348 Sum_probs=384.9
Q ss_pred EEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHHHHH
Q 010065 86 LVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLAN 165 (519)
Q Consensus 86 liiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~~a~ 165 (519)
||||+|+|+|+++|+|.++.....+++.|+|+++...+....++.+|..|.+.+.++++++++|+|+++.|..++.++++
T Consensus 1 lviG~ggrehal~~~l~~s~~~~~~~~~pgn~g~~~~~~~~~vp~~~~~d~~~l~~~a~~~~id~vvvg~E~~lv~~~~d 80 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVFCAPGNAGIATSGDATCVPDLDISDSAAVISFCRKWGVGLVVVGPEAPLVAGLAD 80 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCCEEEECCCCHHHhhhccceeecCCCCCCHHHHHHHHHHcCCCEEEECCchHHHHHHHH
Confidence 68999999999999999986677889999999876654322232368889999999999999999999999999889999
Q ss_pred HHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHH
Q 010065 166 KLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLE 245 (519)
Q Consensus 166 ~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~ 245 (519)
.|+..|+|++|++.+++.+++||..+|++|+++|||+|++..+++.+++.+++++++||+||||..+++|+||.++++.+
T Consensus 81 ~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~~~~~~g~PvVVKp~~~~~GkGV~iv~~~~ 160 (434)
T PLN02257 81 DLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLE 160 (434)
T ss_pred HHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCCCEEEEcCCCCCCCCEEEECCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHH
Q 010065 246 EAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKE 325 (519)
Q Consensus 246 el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~ 325 (519)
|+.++++.++....|+..+..+||||||+|+|+++.+++||+.++++...+.|+++++++.||++|+++++.|++.++++
T Consensus 161 el~~a~~~~~~~~~fg~~~~~vlIEefi~G~E~Sv~~~~dG~~~~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~ 240 (434)
T PLN02257 161 EAYEAVDSMLVKGAFGSAGSEVVVEEFLDGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPE 240 (434)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEECCCCCEEEEEEEECCCcEEEEEeeeecccccCCCCCCCCCCCeeEecCCCCCHH
Confidence 99999988764434444457899999999999999999998777888878888899999999999999999998778999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEE-cCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCC
Q 010065 326 LQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIE-KKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELT 404 (519)
Q Consensus 326 ~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~-~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~ 404 (519)
+.+++.+.+++.+++++.+.+++|.|++++||+++ +++ +|||+|+|+|||++.++.+++.++.||.+++++++.|++.
T Consensus 241 ~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~l~ 319 (434)
T PLN02257 241 LESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-LPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGELS 319 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-CEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCCCC
Confidence 99988888888888999999999999999999998 555 6999999999999988888888999999999999999988
Q ss_pred CCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHH
Q 010065 405 GVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQ 484 (519)
Q Consensus 405 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~ 484 (519)
+.++.|.+.++++++++++|||+.+.++..|.++++.....+++.+||++......|++.++++|++.|++.|+|.+||+
T Consensus 320 ~~~~~~~~~~av~vv~a~~gYp~~~~~g~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~t~ggRvl~v~~~g~~~~~A~ 399 (434)
T PLN02257 320 GVSLTWSPDSAMVVVMASNGYPGSYKKGTVIKNLDEAEAVAPGVKVFHAGTALDSDGNVVAAGGRVLGVTAKGKDIAEAR 399 (434)
T ss_pred CCCceECCCceEEEEEcCCCCCCCCCCCCEeeCCccccccCCCCEEEECCceEccCCEEEECCCeEEEEEEecCCHHHHH
Confidence 77889988899999999999999998888999887643223567799988775346889999999999999999999999
Q ss_pred HHHHHHhhccccCCeeecccccccccccccc
Q 010065 485 DRAYLAVEEINWPGGFYRRDIGWRALPQKQF 515 (519)
Q Consensus 485 ~~a~~~~~~i~~~g~~~r~dig~~~~~~~~~ 515 (519)
++|+++++.|+|+|.|||+|||.+++.+++-
T Consensus 400 ~~ay~~~~~i~~~~~~~R~DIg~~~~~~~~~ 430 (434)
T PLN02257 400 ARAYDAVDQIDWPGGFFRRDIGWRAVARLQV 430 (434)
T ss_pred HHHHHHHhcCCCCCCEeechhhHHHHHhhhh
Confidence 9999999999999999999999998877663
No 3
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=6.8e-67 Score=542.37 Aligned_cols=423 Identities=47% Similarity=0.784 Sum_probs=378.2
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
..|||||+|+|+++|+++|+|+++..+..+++.|+|.++........+ .+|..|.+.|+++++++++|+|++++|++++
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~-~~~~~d~~~l~~~a~~~~iD~Vv~g~E~~l~ 81 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPAD-SFSILDKSSVQSFLKSNPFDLIVVGPEDPLV 81 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhcccccccc-CcCcCCHHHHHHHHHHcCCCEEEECCchHHH
Confidence 358999999999999999999998656778888998876543211112 4688999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEE
Q 010065 161 SGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIV 240 (519)
Q Consensus 161 ~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~ 240 (519)
+++++.++++|+|++|++..++.+++||..+|++|+++|||+|++..+++.+++.+++++++||+||||..+++|+||.+
T Consensus 82 ~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~v 161 (426)
T PRK13789 82 AGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLPIVIKADGLAAGKGVTV 161 (426)
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCC
Q 010065 241 AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAP 320 (519)
Q Consensus 241 v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~ 320 (519)
+++.+|+.++++.++....++..+..+||||||+|+|+++.+++||+.+.+++..+.|++.++++.+|++|++++++|++
T Consensus 162 v~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G~E~Sv~~~~dg~~~~~lp~~~d~k~~~d~d~g~~tggmg~~~P~p 241 (426)
T PRK13789 162 ATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEGQEASIFAISDGDSYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAP 241 (426)
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCCeEEEEEEEECCCEEEEccceEecccccCCCCCCCCCCceEEeeCC
Confidence 99999999999998765555544568999999999999999999888777777777888999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHh
Q 010065 321 VLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACR 400 (519)
Q Consensus 321 ~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~ 400 (519)
.++++..+++++.+.+.+.++++++|+.|.|++++|||++++| ++||+|+|+|||++.++.+++.+..||.+++++++.
T Consensus 242 ~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g-~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~~ 320 (426)
T PRK13789 242 VITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEG-EPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAAST 320 (426)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCC-CEEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHHc
Confidence 7799999999887777788999999988889999999999877 799999999999999988888889999999999999
Q ss_pred CCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCH
Q 010065 401 GELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDV 480 (519)
Q Consensus 401 g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~ 480 (519)
|+++..++.|.+++++.++++++|||..+.++..+. +++.. .+++.+||+++.. ..|++.++++|++.|++.|+|.
T Consensus 321 g~l~~~~~~~~~~~s~~vv~a~~gyp~~~~~g~~i~-~~~~~--~~~~~if~a~~~~-~~~~~~t~ggRvl~v~~~g~~~ 396 (426)
T PRK13789 321 GKIKVVNLKLKQGAAAVVVLAAQGYPDSYEKNIPLN-LPETS--GQNVVLFHAGTKK-KDGKVFSSGGRILGIVAQGKDL 396 (426)
T ss_pred CCCCCCCceecCCceEEEEECcCCcCCCcCCCCEEe-ccCcC--CCCcEEEEeeeee-eCCEEEeCCCeEEEEEEecCCH
Confidence 998777788888899999999999999887776666 55421 1467799988764 5788999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCeeecccccccc
Q 010065 481 EEAQDRAYLAVEEINWPGGFYRRDIGWRA 509 (519)
Q Consensus 481 ~ea~~~a~~~~~~i~~~g~~~r~dig~~~ 509 (519)
+||+++|++++++|+|+|.|||+|||.+.
T Consensus 397 ~~A~~~ay~~~~~i~~~~~~~R~Dig~~~ 425 (426)
T PRK13789 397 KDSVDQAYSFLEKIQAPKTFYRKDIGRRA 425 (426)
T ss_pred HHHHHHHHHHHhcCCCCCCEEeccccccc
Confidence 99999999999999999999999999865
No 4
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.3e-61 Score=507.33 Aligned_cols=426 Identities=32% Similarity=0.506 Sum_probs=362.9
Q ss_pred cEEEEEeCChhHHHHHHHHHhcC-CCcEEEEecC--CCCCcCCCC---CccccCCCCCCHHHHHHHHHHcCCcEEEECCC
Q 010065 83 VVVLVIGGGGREHALCYALKRSH-SCDAVFCAPG--NAGISNSGD---ATCIPDLDVLDGDAVISFCRKWSVGLVVVGPE 156 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~-g~~~v~~~~~--~~~~~~~~~---~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E 156 (519)
|||||+|+|+++|+++|+|+++. +++++.+ +. |+++...+. ...+ ..+..|.+.++++++++++|+|++++|
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~-~g~~Npg~~~~~~~~~~~~~-~~~~~d~~~l~~~a~~~~id~Vi~g~E 78 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYAL-SSYLNPGINSVVKATGGEYF-IGNINSPEEVKKVAKEVNPDLVVIGPE 78 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEE-ECCCChhheeecccccCceE-ecCCCCHHHHHHHHHHhCCCEEEECCc
Confidence 68999999999999999998875 5655554 55 666544321 1223 567889999999999999999999999
Q ss_pred hhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCC-CeeecCCHHHHHHHHHHhCCCEEEEeCCCCCC
Q 010065 157 APLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTA-KYKTFTDPNAAKQYIQEEGAPIVVKADGLAAG 235 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p-~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs 235 (519)
+++++++++.|+.+|+|++|++.+++.+++||..||++|+++|||+| ++..+++.+++.++++.. +|+||||..++||
T Consensus 79 ~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~~~~~-~PvVVKP~~~agg 157 (486)
T PRK05784 79 EPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYDVEEAAKFIEYG-GSVAIKPARQAGG 157 (486)
T ss_pred hHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCCHHHHHHHHhhc-CCEEEeeCCCCCC
Confidence 99998999999999999999999999999999999999999999996 788889999988888665 6999999999999
Q ss_pred CcEEEeCCHHH-----HHHHH----HHHHhh-ccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCC
Q 010065 236 KGVIVAMTLEE-----AYEAV----DSMLLK-NAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 236 ~GV~~v~~~~e-----l~~a~----~~~~~~-~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~ 305 (519)
+||.++++.++ +.+++ ++++.. ..|+..+..+||||||+|+|++|++++||+.+++++..+.++++++++
T Consensus 158 kGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G~E~SV~al~dG~~~~~l~~~qd~k~~~~~d 237 (486)
T PRK05784 158 KGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDG 237 (486)
T ss_pred CCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCCeEEEEEEEECCCeEEEeeeeEeecceecCC
Confidence 99999999873 33444 444322 334445678999999999999999999888777788888889999999
Q ss_pred CCCCCCCceEEec----CCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEE-cCCCceEEEEEeCCCCCCc
Q 010065 306 TGPNTGGMGAYSP----APVLTKELQSVVMESIILPTVKGMSAE-GCKFVGVLYAGLMIE-KKSGLPKLIEYNVRFGDPE 379 (519)
Q Consensus 306 ~~~~~g~~~~~~P----~~~l~~~~~~~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~-~~g~~~~viEiN~R~G~~~ 379 (519)
.++++|+++++.| .+.++++..+++.+. ++.+++++... |+.|+|++|+|++++ ++| |++||+|+|+|++.
T Consensus 238 ~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~-v~~~l~al~~~~g~~~~G~l~~elmlt~~~G--P~vIE~n~R~Gdpe 314 (486)
T PRK05784 238 IGPETGGMGSISGPGELLPFINEEEYEEAVEI-VKRTIDAIYKETGERYVGVISGQMMLTELWG--PTVIEYYSRFGDPE 314 (486)
T ss_pred CCCCCCCCcccCCccccCCCCCHHHHHHHHHH-HHHHHHHHHHhcCCCcEEEEEEEEEEecCCC--cEEEEEecccCCch
Confidence 9999999999999 775678877777754 44455666555 888889999999999 888 99999999999999
Q ss_pred hHHHHHHhCCCHHHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEEEeeeee
Q 010065 380 CQVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIFHAGTAL 457 (519)
Q Consensus 380 ~~~~~~~~G~d~~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 457 (519)
++.+++.++.|+.+++++++.|++.+.++.|++.+++.+++++.|||.. +.++..|.+.++.. ..+++.+||+++..
T Consensus 315 ~~~llp~l~~dl~~~~~~~~~g~l~~~~~~~~~~~~~~vv~as~gYp~~~~~~~g~~i~~~~~~~-~~~~~~v~~ag~~~ 393 (486)
T PRK05784 315 ASNIIPRIESDFGELFELAATGKLSKAKIKFNEEPSVVKAIAPLGYPLSRDLASGRRIVVDLDKI-KEEGCLVFFGSVEL 393 (486)
T ss_pred HHHHHHhccCCHHHHHHHHHcCCCCCCCeeecCCceEEEEECCCCCCCcccCCCCCEEECCcccc-ccCCCEEEECCcee
Confidence 9999999988999999999999988778888888899999999999988 77888887765311 11356689988764
Q ss_pred cCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHhhcc-ccCCeeeccccccccccccccc
Q 010065 458 DADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEI-NWPGGFYRRDIGWRALPQKQFA 516 (519)
Q Consensus 458 ~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i-~~~g~~~r~dig~~~~~~~~~~ 516 (519)
..|++.++++|++.|++.|+|.++|+++|++++++| +|+|.|||+|||.+++++++|.
T Consensus 394 -~~~~~~t~ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~~~yR~DIg~~~~~~~~~~ 452 (486)
T PRK05784 394 -EGGQLITKGSRALEIVAIGKDFEEAYEKLERCISYVSSDTKLIYRTDIGSPEYMEYQIE 452 (486)
T ss_pred -eCCEEEEcCCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCCCCcccccCchHHHHHHHH
Confidence 578899999999999999999999999999999999 9999999999999999999874
No 5
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=7.5e-61 Score=500.95 Aligned_cols=418 Identities=62% Similarity=1.011 Sum_probs=365.5
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
|||||+|+|+++++++|+++++.++.+++++|.|++....+. .+ .+++.|.+.++++++++++|+|+++.|+.+...
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~~~~~~i~~~~~n~g~~~~~~--~~-~~~~~d~~~l~~~~~~~~id~vi~~~e~~l~~~ 77 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVAPGNAGTALLAE--NV-VIDVTDIEALVAFAKEEGIDLTVVGPEAPLVAG 77 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEeCCCHHHHhhcc--cc-CCCCCCHHHHHHHHHHhCCCEEEECCchHHHHH
Confidence 689999999999999999999877778888888877654432 34 578889999999999999999999999888778
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeC
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAM 242 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~ 242 (519)
+++.++++|+|++|++++++.+++||..+|++|+++|||+|++..+.+.+++.+++++++||+|+||..++||+||++++
T Consensus 78 ~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~VvKP~~~~gs~Gv~~v~ 157 (420)
T PRK00885 78 IVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAM 157 (420)
T ss_pred HHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCCcEEEeC
Confidence 88899999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCC
Q 010065 243 TLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVL 322 (519)
Q Consensus 243 ~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l 322 (519)
+.+|+.++++.++....++.....+||||||+|+|+++.+++||+.+.+++..+.+++.++++.++++|+++++.|++.+
T Consensus 158 ~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l 237 (420)
T PRK00885 158 TLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDGEEASFFAFVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVV 237 (420)
T ss_pred CHHHHHHHHHHHhhcccccCCCCeEEEEEccCCcEEEEEEEECCCceEeceeeEeeeecccCCCCCCCCCCceeccCCCC
Confidence 99999999999875433333456899999999999999999988777767766677778888888999999999999768
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 323 TKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 323 ~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
+++..+++.+...+.+.+++.++|+.++|++|+||+++++| +||+|+|+|+|++.++.+++.++.|+.+++++++.|.
T Consensus 238 ~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g--~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g~ 315 (420)
T PRK00885 238 TEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG--PKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADGK 315 (420)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC--cEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcCC
Confidence 88888877765556677888899998889999999999888 9999999999998887888888999999999999999
Q ss_pred CCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHH
Q 010065 403 LTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEE 482 (519)
Q Consensus 403 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~e 482 (519)
+++.++.+.+..++++++++++||..+.++..+.+++++. .+.+++.+... ..+.+.++++|+++|++.|+|.+|
T Consensus 316 ~~~~~~~~~~~~a~~~~~~~~gy~~~~~~~~~i~~~~~~~----~~~~~~~~~~~-~~~~~~~~g~R~~~vi~~g~t~~e 390 (420)
T PRK00885 316 LDEVELEWDDRAAVGVVLAAKGYPGDYRKGDVITGLEAAD----ADKVFHAGTKL-EDGKLVTNGGRVLCVTALGDTLEE 390 (420)
T ss_pred CCCCCceECCCcEEEEEEeCCCCCCCCCCCCEeecccccC----CCEEEECceec-cCCeEEEeCCEEEEEEEecCCHHH
Confidence 7766677767788899999999998877777777776532 23566666553 458899999999999999999999
Q ss_pred HHHHHHHHhhccccCCeeeccccccccc
Q 010065 483 AQDRAYLAVEEINWPGGFYRRDIGWRAL 510 (519)
Q Consensus 483 a~~~a~~~~~~i~~~g~~~r~dig~~~~ 510 (519)
|+++|+++++.|+++|.|||+|||.+++
T Consensus 391 A~~~a~~~~~~i~~~~~~~r~dig~~~~ 418 (420)
T PRK00885 391 AQKRAYAALDKIDFDGGFYRRDIGYRAL 418 (420)
T ss_pred HHHHHHHHHhccCCCCCEeechhhhhhh
Confidence 9999999999999999999999999765
No 6
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.4e-58 Score=481.39 Aligned_cols=416 Identities=31% Similarity=0.455 Sum_probs=347.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC--CCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG--NAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~--~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
.|||||+|+|+++|+++|+|+++ |.+++.+ +. |++....++ ..+ .+++.|.+.++++|+++++|+|+++.|..+
T Consensus 2 ~~kVLvlG~G~re~al~~~l~~~-g~~v~~~-~~~~Npg~~~~a~-~~~-~~~~~d~e~l~~~~~~~~id~Vi~~~d~~l 77 (435)
T PRK06395 2 TMKVMLVGSGGREDAIARAIKRS-GAILFSV-IGHENPSIKKLSK-KYL-FYDEKDYDLIEDFALKNNVDIVFVGPDPVL 77 (435)
T ss_pred ceEEEEECCcHHHHHHHHHHHhC-CCeEEEE-ECCCChhhhhccc-cee-ecCCCCHHHHHHHHHHhCCCEEEECCChHH
Confidence 47999999999999999999987 7655544 55 666544332 223 578899999999999999999999988888
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCC-eeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcE
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK-YKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGV 238 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~-~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV 238 (519)
..++++.|++.|+|++|++.+++.+++||..||++|+++|||+|+ +..+.+.+++..+..+++||+||||.+++||+||
T Consensus 78 ~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~e~~~~~~~~~~PvVVKP~~~sggkGV 157 (435)
T PRK06395 78 ATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITSMKDVAVKPIGLTGGKGV 157 (435)
T ss_pred HHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCChHHHHHHHHhhCCCEEEEeCCCCCCCCe
Confidence 778888899999999999999999999999999999999999974 4466667777777778899999999999999999
Q ss_pred EEeCC----HHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCce
Q 010065 239 IVAMT----LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMG 314 (519)
Q Consensus 239 ~~v~~----~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (519)
.++.+ .+++..+..+.+ +.+..+||||||+|.||++++++||+.+++++..+.+++.++++.++++|+++
T Consensus 158 ~v~~~~~~~~~ea~~~~~~~~------~~~~~viIEEfl~G~E~Svd~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG 231 (435)
T PRK06395 158 KVTGEQLNSVDEAIRYAIEIL------DRDGVVLIEKKMTGEEFSLQAFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMG 231 (435)
T ss_pred EEecCchhhHHHHHHHHHHHh------CCCCcEEEEeecCCceEEEEEEEcCCeEEEecccceeeecccCCCCCccCCCc
Confidence 99954 334333333332 13468999999999999999999998888888888888999999999999999
Q ss_pred EEe----cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCC
Q 010065 315 AYS----PAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESD 390 (519)
Q Consensus 315 ~~~----P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d 390 (519)
++. |.+.++++..+++.+ +++.+.+++...+..++|++++||+++++| ||+||+|+|+|++..+.+++.+..|
T Consensus 232 ~~s~~~~~~p~l~~~~~~~i~~-i~~~~~~~l~~~~~~~~G~l~~~~~lt~~g--p~ViE~n~R~gdpe~~~il~~l~~d 308 (435)
T PRK06395 232 SISDRDFSLPFLSKDAPERAKH-ILNDIIRAMKDENNPFKGIMYGQFMDTPNG--VKVIEINARFADPEGINVLYLLKSD 308 (435)
T ss_pred cccCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCCceEEEEEEEEEEeCCC--cEEEEEeCCCCCccHHhhhhhcccC
Confidence 887 444488998888855 555677777878888899999999999888 9999999999999888899999999
Q ss_pred HHHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeE
Q 010065 391 LAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRV 470 (519)
Q Consensus 391 ~~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rv 470 (519)
|.+++++++.|++.. ...+.+..++..++++.|||..+.++ .|...+.+ ..+++.+|+.+... ..+.+.++++|+
T Consensus 309 ~~~~~~~~~~g~l~~-~~~~~~~~~~~~~l~~~gYp~~~~~g-~i~~~~~~--~~~~~~~~~~~~~~-~~~~~~s~ggRv 383 (435)
T PRK06395 309 FVETLHQIYSGNLNG-SIKFERKATVLKYIVPPGYGENPSPG-RIKIDKTI--FDSNSDVYYASVSG-TLNDVKTSGSRS 383 (435)
T ss_pred HHHHHHHHhcCCCCC-CceecCCCEEEEEEecCCCCCCCCCC-ceeccccc--cCCCCEEEEeeccc-cCCCeEECCCcE
Confidence 999999999998755 56666667777899999999988776 56544322 12455677776542 234589999999
Q ss_pred EEEEEecCCHHHHHHHHHHHhhccccCCeeeccccccccccccccc
Q 010065 471 LGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQKQFA 516 (519)
Q Consensus 471 g~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig~~~~~~~~~~ 516 (519)
++|++.|+|.+||+++|+++++.|+ .+.|||+|||.++|++++|.
T Consensus 384 ~~vv~~g~~~~eA~~~a~~~~~~I~-~~~~~R~Dig~~~~~~~~~~ 428 (435)
T PRK06395 384 LAIIAKGDSIPEASEKVDSDLNAVH-GSYYVRRDIGDSDFIRKKIK 428 (435)
T ss_pred EEEEEEcCCHHHHHHHHHHHHhccC-CCcEeecchhhHHHHHHHHH
Confidence 9999999999999999999999999 89999999999999998874
No 7
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.9e-59 Score=466.30 Aligned_cols=425 Identities=60% Similarity=0.978 Sum_probs=399.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCcccc--CCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIP--DLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~--~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
+.+|||||+|+|||.++|+|++++-+..+++.|+|.+++. .++..++ .++..|.+++.++|+++++.+|++|+|.++
T Consensus 2 ~~~vLviGsGgREHal~wkL~qSp~v~~v~vaPGn~G~a~-~~~~~~~~~dI~~~d~~ala~f~~e~~I~lVvvGPE~PL 80 (788)
T KOG0237|consen 2 RVNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTAS-GDASKVPNLDISVADFEALASFCKEHNINLVVVGPELPL 80 (788)
T ss_pred ceEEEEEcCCchHhHHHHHhhcCCccceEEEccCCCCccc-CccccCcccccChhhHHHHHHHHHHcceeEEEECCchhh
Confidence 4689999999999999999999999999999999998876 3344444 455569999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC-CCEEEEeCCCCCCCcE
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG-APIVVKADGLAAGKGV 238 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g-~P~VvKP~~g~gs~GV 238 (519)
+.+++..|.+.|||++||+.+++.+..+|..+|+++.++|||++.|..+++.+++..+++..+ .++|||...-..++||
T Consensus 81 ~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~~~ViKAdGLAAGKGV 160 (788)
T KOG0237|consen 81 VAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVIKADGLAAGKGV 160 (788)
T ss_pred hhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHHHHHHHHHhCCCcceEEeecccccCCce
Confidence 999999999999999999999999999999999999999999999999999999999999998 5699999999999999
Q ss_pred EEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEec
Q 010065 239 IVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSP 318 (519)
Q Consensus 239 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P 318 (519)
.+..+.+|..+++++++....|++....++|||+++|.|+|+-++.||..+.+++..++|++.++++.+|++|+++.++|
T Consensus 161 iv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEGeEvS~laftDG~s~~~mp~aQDHKRl~dgD~GpNTGgmGaY~p 240 (788)
T KOG0237|consen 161 IVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEGEEVSFLAFTDGYSVRPLPPAQDHKRLGDGDTGPNTGGMGAYAP 240 (788)
T ss_pred EeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCcceEEEEEEecCcccccCCcccchhhhcCCCCCCCCCCcccccc
Confidence 99999999999999999877888888999999999999999999999998899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 319 APVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 319 ~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
++..++++.+.+++.+++.+++-++..|+.|.|+...-+|+++++ |.++|.|.|+|.+.++.+++.+..|+++.+...
T Consensus 241 aPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~--P~vLEfN~RFGDPEtQv~l~lLesDL~evi~a~ 318 (788)
T KOG0237|consen 241 APVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDG--PKVLEFNVRFGDPETQVLLPLLESDLAEVILAC 318 (788)
T ss_pred CCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecCC--ccEEEEecccCCchhhhhHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecC
Q 010065 399 CRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGK 478 (519)
Q Consensus 399 ~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~ 478 (519)
+.|++....+.|.+..++.+++++.+||+.+.++..|.++++. ..+...+||+|... ..+.+.++++|+..|++.++
T Consensus 319 ~~~~L~~~~i~w~~~sa~~VV~as~gYP~sy~KG~~It~~~~~--~~~~~rVFHAGTs~-~ss~vvTNGGRVLsVTA~~~ 395 (788)
T KOG0237|consen 319 CNGRLDTVDIVWSKKSAVTVVMASGGYPGSYTKGSIITGLPEA--DRPGTRVFHAGTSL-DSSNVVTNGGRVLSVTATGD 395 (788)
T ss_pred hhCCccccCccccccceEEEEEecCCCCCCCcCCcccccCccc--CCCcceEEeccccc-cccceEecCceEEEEEecCc
Confidence 9999999999999889999999999999999999999999885 45688999999887 35578899999999999999
Q ss_pred CHHHHHHHHHHHhhccccCCeeeccccccccccc
Q 010065 479 DVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQ 512 (519)
Q Consensus 479 t~~ea~~~a~~~~~~i~~~g~~~r~dig~~~~~~ 512 (519)
+.++|.+.|+++.+.|.|.|.+||+|||++.|--
T Consensus 396 ~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~ra~~~ 429 (788)
T KOG0237|consen 396 DLESAAETAYKAVQVISFSGKFYRKDIAWRAFKN 429 (788)
T ss_pred hHHHHHHHHHHHheEEeeccccccchhhhhhcch
Confidence 9999999999999999999999999999997753
No 8
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=100.00 E-value=1.3e-57 Score=477.45 Aligned_cols=421 Identities=57% Similarity=0.921 Sum_probs=357.4
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCc-EEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCD-AVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVS 161 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~-~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~ 161 (519)
|||+|+|+|++++.++|++++. ++. .+++.++|++.........+ ..|+.|.+.++++++++++|+|+++.|..+..
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~~~~~~~~id~vi~~~e~~l~~ 78 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQS-PLVKYVYVAPGNAGTARLAKNKNV-AISITDIEALVEFAKKKKIDLAVIGPEAPLVL 78 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhC-CCccEEEEECCCHHHhhhcccccc-cCCCCCHHHHHHHHHHhCCCEEEECCchHHHH
Confidence 6899999999999999999887 543 55556777766544322333 56889999999999999999999998877766
Q ss_pred HHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC-EEEEeCCCCCCCcEEE
Q 010065 162 GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP-IVVKADGLAAGKGVIV 240 (519)
Q Consensus 162 ~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P-~VvKP~~g~gs~GV~~ 240 (519)
.+++.++.+|+|++|++++++.+++||..||++|+++|||+|++..+.+.+++.+++++++|| +|+||..++||+||++
T Consensus 79 ~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~ 158 (423)
T TIGR00877 79 GLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQEKGAPAIVVKADGLAAGKGVIV 158 (423)
T ss_pred HHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcCCCeEEEEECCCCCCCCEEE
Confidence 788889999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCC
Q 010065 241 AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAP 320 (519)
Q Consensus 241 v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~ 320 (519)
+++.+|+.++++.++... ++.....+||||||+|+|+++.++.||+.+..++..+.+++.++++.++++++++++.|++
T Consensus 159 v~~~~el~~~~~~~~~~~-~g~~~~~~lvEe~i~G~E~sv~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 237 (423)
T TIGR00877 159 AKTNEEAIKAVEEILEQK-FGDAGERVVIEEFLDGEEVSLLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAP 237 (423)
T ss_pred ECCHHHHHHHHHHHHHHh-cCCCCCeEEEEECccCceEEEEEEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCC
Confidence 999999999998886532 2223468999999999999999999887666666666666777888888889989999986
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHh
Q 010065 321 VLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACR 400 (519)
Q Consensus 321 ~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~ 400 (519)
.++++...++.+.+.+.+.+++.++++.++|++|+||+++++| +|++|||||+|++.++.+.+.+++|+.+++++++.
T Consensus 238 ~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g--~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~ 315 (423)
T TIGR00877 238 VFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEG--PKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVE 315 (423)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCC--cEEEEEEccCCCccceeEecccCCCHHHHHHHHHc
Confidence 6888877777776777778888888887789999999999888 99999999999887766777789999999999999
Q ss_pred CCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCH
Q 010065 401 GELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDV 480 (519)
Q Consensus 401 g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~ 480 (519)
|.++++++.+.+..++.+++++++||....++..|.+.+ . ...+++.+++.+... ..+.+.++++|+++|++.|+|.
T Consensus 316 g~l~~~~~~~~~~~a~~~~~~~~~yp~~~~~~~~i~~~~-~-~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~vi~~g~~~ 392 (423)
T TIGR00877 316 GKLDEVELRFDNRAAVTVVLASEGYPGDYRKGDPITGEP-L-IEAEGVKVFHAGTKQ-DNGKLVTSGGRVLAVTALGKSL 392 (423)
T ss_pred CCCCCCCceECCCceEEEEEecCCcCCCCCCCCEeeCCc-c-cccCCCEEEECceec-cCCEEEEcCCEEEEEEEecCCH
Confidence 987766677777788888888899998776666776653 2 223566677655433 4688899999999999999999
Q ss_pred HHHHHHHHHHhhccccCCeeecccccccccc
Q 010065 481 EEAQDRAYLAVEEINWPGGFYRRDIGWRALP 511 (519)
Q Consensus 481 ~ea~~~a~~~~~~i~~~g~~~r~dig~~~~~ 511 (519)
++|++++++++++|+++|.|||+|||.+.++
T Consensus 393 ~~a~~~~~~~~~~i~~~~~~~r~dig~~~~~ 423 (423)
T TIGR00877 393 EEARERAYEAVEYIKFEGMFYRKDIGFRALE 423 (423)
T ss_pred HHHHHHHHHHHhcCCCCCCEEecccchhhhC
Confidence 9999999999999999999999999997753
No 9
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=5.5e-55 Score=448.66 Aligned_cols=368 Identities=44% Similarity=0.738 Sum_probs=324.5
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecC
Q 010065 130 DLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT 209 (519)
Q Consensus 130 ~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~ 209 (519)
.+|..|.+.++++|+++++|+|+++.|..++.++++.|+..|+|++|++++++.+++||..+|++|+++|||+|++..+.
T Consensus 10 ~~~~~d~~~l~~~~~~~~id~vi~g~E~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~ 89 (379)
T PRK13790 10 EISESDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVE 89 (379)
T ss_pred cCCCCCHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEEC
Confidence 56888999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCee
Q 010065 210 DPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENA 289 (519)
Q Consensus 210 ~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~ 289 (519)
+.+++.+++++++||+|+||..+++|+||.+++|.+|+.++++.++.. ..+..+||||||+|+|+++.++++|+..
T Consensus 90 ~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~----~~~~~vlvEe~i~G~E~sv~~~~~g~~~ 165 (379)
T PRK13790 90 RKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGD----EEEGTVVFETFLEGEEFSLMTFVNGDLA 165 (379)
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc----CCCCeEEEEEcccCceEEEEEEeeCCEE
Confidence 999998888999999999999999999999999999999999987631 1346899999999999999999988755
Q ss_pred EEe-ccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEE
Q 010065 290 IPL-ESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKL 368 (519)
Q Consensus 290 ~~~-~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~v 368 (519)
.++ ...+.++++++++.++++|+++.++|++.++++..+++.+.+.+.+.+++.+.|+.|.|++|+||+++++| +||
T Consensus 166 ~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g--~~v 243 (379)
T PRK13790 166 VPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG--PKV 243 (379)
T ss_pred EecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC--eEE
Confidence 544 34556778899999999999999999876888877777555656677888888998889999999999888 999
Q ss_pred EEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCe
Q 010065 369 IEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSV 448 (519)
Q Consensus 369 iEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 448 (519)
+|+|+|+|++..+.+++.+|+|+.+++++.+.|+ .+.+.+.+..++.+.+++.+||..+.++..|.+++. +.
T Consensus 244 iEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~--~~~~~~~~~~~~~v~~~s~gyp~~~~~~~~i~~~~~-----~~- 315 (379)
T PRK13790 244 IEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGK--RTEFKWKNESIVGVMLASKGYPDAYEKGHKVSGFDL-----NE- 315 (379)
T ss_pred EEEEcccCCCcceeeecccCCCHHHHHHHHHcCC--CCceeEcCCCEEEEEEccCCCCCCCCCCCeeeecCC-----CC-
Confidence 9999999998887788888999999999999997 344667777888999999999998877777776531 22
Q ss_pred EEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCeeeccccccccccc
Q 010065 449 KIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIGWRALPQ 512 (519)
Q Consensus 449 ~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig~~~~~~ 512 (519)
.+|+.+... ..|.+.++++|++.|++.|+|.+||+++|+++++.|+++|.+||+|||.+++.+
T Consensus 316 ~~~~~~~~~-~~~~~~~~ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~~~R~dig~~~~~~ 378 (379)
T PRK13790 316 NYFVSGLKK-QGDTFVTSGGRVILAIGKGDNVQDAQRDAYEKVSQIQSDHLFYRHDIANKALQL 378 (379)
T ss_pred eEEECCccc-cCCeEEECCCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechhhhHhhhc
Confidence 477777543 467799999999999999999999999999999999999999999999988754
No 10
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=100.00 E-value=3e-45 Score=370.90 Aligned_cols=309 Identities=22% Similarity=0.196 Sum_probs=242.6
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCC--cccc--C
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDA--TCIP--D 130 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~--~~v~--~ 130 (519)
++||+|||||.|+||+||+.||.+ +..+|.+. |++++.++.+..+.+..... ..+. .
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~------------------v~~~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 63 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKS------------------VLKALDKE-KYEVVPIGITKDGRWYLIDADNMELADDD 63 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHH------------------HHHHhccc-CCEEEEEEECCCCCEeeccchhhhccccc
Confidence 679999999999999999999876 67888665 89988887554443322110 0010 0
Q ss_pred CCCCCHHHHHHHHHHc--CCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCC
Q 010065 131 LDVLDGDAVISFCRKW--SVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTA 203 (519)
Q Consensus 131 ~d~~d~~~l~~~~~~~--~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p 203 (519)
.+..+.. +....+.. ++|+||+. +|++.+|++ |+.+|+||+|+++.++.+++||..+|++|+++|||+|
T Consensus 64 ~~~~~~~-~~~~~~~~~~~~D~vf~~lhG~~gedg~iq~l---le~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p 139 (333)
T PRK01966 64 NDKEDLS-LLILPSGGSEEVDVVFPVLHGPPGEDGTIQGL---LELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVA 139 (333)
T ss_pred ccccccc-hhccccccCccCCEEEEccCCCCCCCcHHHHH---HHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCC
Confidence 0001111 11111122 69999992 699987666 9999999999999999999999999999999999999
Q ss_pred CeeecCCHHH----HHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEE
Q 010065 204 KYKTFTDPNA----AKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEAS 279 (519)
Q Consensus 204 ~~~~v~~~~~----~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~s 279 (519)
++..+.+.++ +..+.+.++||+||||..++||.||.++++.+|+.++++.++. .++.+|||+||+|+|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~------~~~~vlvEefI~G~E~~ 213 (333)
T PRK01966 140 PYVVLTRGDWEEASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFE------YDRKVLVEQGIKGREIE 213 (333)
T ss_pred CEEEEeccccchhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHh------cCCcEEEEcCcCCEEEE
Confidence 9998876544 3445678999999999999999999999999999999998874 46789999999999999
Q ss_pred EEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEE
Q 010065 280 FFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMI 359 (519)
Q Consensus 280 v~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~ 359 (519)
|.++.++..+.++........+++++.+|..+.+.+++|+. ++++..+++++.+ .++++++|++ |++|+||++
T Consensus 214 v~vl~~~~~~~~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a----~~~~~aLg~~--G~~rvDf~~ 286 (333)
T PRK01966 214 CAVLGNDPKASVPGEIVKPDDFYDYEAKYLDGSAELIIPAD-LSEELTEKIRELA----IKAFKALGCS--GLARVDFFL 286 (333)
T ss_pred EEEECCCCeEcccEEEecCCceEcHHHccCCCCceEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCc--ceEEEEEEE
Confidence 99997533344333333333588888888777778889998 9999999998877 4688999987 999999999
Q ss_pred EcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHhC
Q 010065 360 EKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACRG 401 (519)
Q Consensus 360 ~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~g 401 (519)
+++| ++||+|||||||+|.. ++++. .|+++.+++..++..
T Consensus 287 ~~~g-~~~vlEiNt~Pg~t~~-s~~p~~~~~~G~~~~~l~~~ii~~ 330 (333)
T PRK01966 287 TEDG-EIYLNEINTMPGFTPI-SMYPKLWEASGLSYPELIDRLIEL 330 (333)
T ss_pred cCCC-CEEEEEeeCCCCCCcc-cHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9876 8999999999999887 56554 399999998877643
No 11
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=1e-44 Score=368.68 Aligned_cols=312 Identities=17% Similarity=0.162 Sum_probs=234.5
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCC-CCcCCCCC-ccccC-C
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNA-GISNSGDA-TCIPD-L 131 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~-~~~~~~~~-~~v~~-~ 131 (519)
++||+|||||.|+||+||+.||.+ +..+|.+..+++++.+..+.. +.|..... ..... .
T Consensus 2 ~~~v~vl~GG~S~EhevSl~Sa~~------------------v~~~l~~~~~~~v~~i~i~~~~g~~~~~~~~~~~~~~~ 63 (364)
T PRK14570 2 KKNLMLIFGGVSFEHEISLRSAYG------------------IYSALLKLDKYNIYSVFIDKCTGIWYLLDSVPDPPKLI 63 (364)
T ss_pred CcEEEEEECCCCcchhhhHHhHHH------------------HHHHhccccCceEEEEEEecCCCeEEecCccccccccc
Confidence 569999999999999999999987 566663333677766554322 32211100 00000 0
Q ss_pred CCCC---------HHHHHHHHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHH
Q 010065 132 DVLD---------GDAVISFCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDK 197 (519)
Q Consensus 132 d~~d---------~~~l~~~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~ 197 (519)
...+ ...+.. .+..++|+||+ .+||+.+|++ |+.+|+||+|+++.++++++||..+|++|++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~-~~~~~~D~vf~~lhG~~GEdg~iqgl---le~~giPy~Gs~~~asal~~DK~~tK~~l~~ 139 (364)
T PRK14570 64 KRDVLPIVSLIPGCGIFVN-NKNLEIDVVFPIVHGRTGEDGAIQGF---LKVMDIPCVGAGILGSAISINKYFCKLLLKS 139 (364)
T ss_pred ccccccccccccccccccc-CcCcCCCEEEEcCCCCCCCcCHHHHH---HHHcCCCccCCCHHHHHHHHCHHHHHHHHHH
Confidence 0000 000000 12236999999 3899988777 9999999999999999999999999999999
Q ss_pred cCCCCCCeeecCC------HHHHHH-HHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEE
Q 010065 198 YGIPTAKYKTFTD------PNAAKQ-YIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIE 270 (519)
Q Consensus 198 ~Gi~~p~~~~v~~------~~~~~~-~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvE 270 (519)
+|||+|++..+.. .+++.+ +.+.++||+||||+++++|.||.++++.+|+.++++.++. .+..+|||
T Consensus 140 ~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~------~~~~vlVE 213 (364)
T PRK14570 140 FNIPLVPFIGFRKYDYFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFK------YDLTVVIE 213 (364)
T ss_pred cCCCCCCEEEEeccccccchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHh------CCCCEEEE
Confidence 9999999877643 344443 3467899999999999999999999999999999999874 45789999
Q ss_pred eccCCcEEEEEEEEeCC-eeEEeccccc-cccccCCCCCCC--CCCc-eEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 010065 271 EFLEGEEASFFALVDGE-NAIPLESAQD-HKRVGDGDTGPN--TGGM-GAYSPAPVLTKELQSVVMESIILPTVKGMSAE 345 (519)
Q Consensus 271 e~I~G~E~sv~~l~dg~-~~~~~~~~~~-~~~~~~~~~~~~--~g~~-~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~ 345 (519)
+||+|+|++|.++.++. .+.+..+... ...+++|+.||. .+.. ...+|++ ++++..+++++.| .++++++
T Consensus 214 efI~GrEi~v~Vlg~~~~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~-l~~e~~~~i~~~A----~~~~~aL 288 (364)
T PRK14570 214 KFIEAREIECSVIGNEQIKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH-LDTKHLLDIKEYA----FLTYKNL 288 (364)
T ss_pred CCcCCEEEEEEEECCCCceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC-CCHHHHHHHHHHH----HHHHHHh
Confidence 99999999999996543 3344333332 225788888885 3443 4567998 9999999999887 4789999
Q ss_pred CCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHh----CCCHHHHHHHHHhCC
Q 010065 346 GCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRL----ESDLAEVLLAACRGE 402 (519)
Q Consensus 346 g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~----G~d~~~~~i~~~~g~ 402 (519)
||+ |+++|||+++++++++||+||||+||+|.+ +++|.+ |+++.+++..++...
T Consensus 289 g~~--G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~-S~~p~~~~~~G~~~~~li~~li~~a 346 (364)
T PRK14570 289 ELR--GMARIDFLIEKDTGLIYLNEINTIPGFTDI-SMFAKMCEHDGLQYKSLVDNLIDLA 346 (364)
T ss_pred CCc--ceEEEEEEEECCCCcEEEEEeeCCCCCCcc-cHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 998 999999999965338999999999999987 666654 999998888776544
No 12
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=100.00 E-value=1.6e-44 Score=367.02 Aligned_cols=307 Identities=19% Similarity=0.190 Sum_probs=232.3
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCc--cc----
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDAT--CI---- 128 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~--~v---- 128 (519)
+|||+|||||.|+||+||+.||++ ++.+|.+. +++++.++.+..+.|...... .+
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~------------------v~~~l~~~-~~~v~~i~i~~~g~~~~~~~~~~~~~~~~ 63 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIE------------------VARNLDTE-KYEPFYIGITKSGVWKLCDGPCAEWENGS 63 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHH------------------HHHhhccc-CCeEEEEEECCCCcEEeCCcccccccccc
Confidence 689999999999999999999987 56777655 788877765543333211100 00
Q ss_pred --c-CCCCC-CHHHHHHH----HHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHH
Q 010065 129 --P-DLDVL-DGDAVISF----CRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC 195 (519)
Q Consensus 129 --~-~~d~~-d~~~l~~~----~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l 195 (519)
. .+.+. +...+... .+..++|+||| .+||+.+|++ |+.+|+||+|+++.++++++||..+|+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~l---le~~gipy~G~~~~asai~~DK~~~k~~l 140 (343)
T PRK14568 64 CRPAVLSPDRKVHGLLVLEQGEYETIRLDVVFPVLHGKLGEDGAIQGL---LELSGIPYVGCDIQSSALCMDKSLAYIVA 140 (343)
T ss_pred ccceeeccccccccccccCccccccccCCEEEEcCCCCCCCchHHHHH---HHHcCCCccCCCHHHHHHHhCHHHHHHHH
Confidence 0 00000 00000000 12346999999 2899987776 99999999999999999999999999999
Q ss_pred HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC
Q 010065 196 DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG 275 (519)
Q Consensus 196 ~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G 275 (519)
+++|||+|++..+.+.++.. .+.++||+||||++++||.||.++++.+||.++++.++. ++..+|||+||+|
T Consensus 141 ~~~GIp~p~~~~~~~~~~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~------~~~~vlVEe~I~G 212 (343)
T PRK14568 141 KNAGIATPAFWTVTADERPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQ------YDSKVLIEEAVVG 212 (343)
T ss_pred HHcCcCcCCEEEEECCchhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh------cCCcEEEECCcCC
Confidence 99999999999987665432 357899999999999999999999999999999998864 4678999999999
Q ss_pred cEEEEEEEEeCCeeEE--eccccccccccCCCCCCC----CCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 010065 276 EEASFFALVDGENAIP--LESAQDHKRVGDGDTGPN----TGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKF 349 (519)
Q Consensus 276 ~E~sv~~l~dg~~~~~--~~~~~~~~~~~~~~~~~~----~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~ 349 (519)
+|++|.++.++..... +........+|++..++. .+....+.|+. ++++..+++++.+ .++++++|+.
T Consensus 213 ~E~sv~vl~~~~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a----~~~~~~Lg~~- 286 (343)
T PRK14568 213 SEVGCAVLGNGADLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD-ISAEERSRVQETA----KAIYRALGCR- 286 (343)
T ss_pred EEEEEEEEcCCCCcceecceEEecCCCccchhhhhccccCCCCeeEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCC-
Confidence 9999999975432211 111222234666665543 23345678998 9999888888876 4688999987
Q ss_pred eeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHh
Q 010065 350 VGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACR 400 (519)
Q Consensus 350 ~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~ 400 (519)
|++|+||+++++| ++||+|||++||+|.. ++++. .|+++.+++-+++.
T Consensus 287 -G~~rvDf~l~~~g-~~~llEINt~Pg~t~~-S~~p~~~~~~G~~~~~l~~~li~ 338 (343)
T PRK14568 287 -GLARVDMFLQEDG-TVVLNEVNTLPGFTSY-SRYPRMMAAAGIPLAELIDRLVS 338 (343)
T ss_pred -cEEEEEEEEeCCC-CEEEEEeeCCCCCCcc-CHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999887 8999999999999876 55543 49999998887764
No 13
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=4.4e-44 Score=364.13 Aligned_cols=307 Identities=18% Similarity=0.188 Sum_probs=236.1
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCC--ccccCCC
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDA--TCIPDLD 132 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~--~~v~~~d 132 (519)
++||+|||||.|+||+||+.||++ ++.+|.+. |++++.+..+..+.+..... ..+ ..+
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~------------------v~~~l~~~-~~~v~~i~~~~~~~~~~~~~~~~~~-~~~ 60 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCF------------------ICATLHTM-GHSVKPILLTPDGGWVVPTVYRPSI-PDE 60 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHH------------------HHHHHhhc-CCEEEEEEECCCCCEeecccccccc-ccc
Confidence 469999999999999999999987 67777665 88876665332222211000 000 000
Q ss_pred C--CCHHHHH-----------HHHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHH
Q 010065 133 V--LDGDAVI-----------SFCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNL 194 (519)
Q Consensus 133 ~--~d~~~l~-----------~~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~ 194 (519)
. .+...+. ......++|++|+ .+||+.+|++ |+.+|+||+|+++.++.+++||..+|++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~hg~~gEdg~iq~~---le~~gipy~Gs~~~a~~i~~DK~~~k~~ 137 (347)
T PRK14572 61 SGNSEDLFLEEFQKANGVSEPADISQLDADIAFLGLHGGAGEDGRIQGF---LDTLGIPYTGSGVLASALAMDKTRANQI 137 (347)
T ss_pred cccccccccccccccccccccccccccCcCEEEEecCCCCCCCcHHHHH---HHHcCcCcCCCCHHHHHHHhCHHHHHHH
Confidence 0 0000011 1112246899998 2899987776 9999999999999999999999999999
Q ss_pred HHHcCCCCCCeeecCC------HHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEE
Q 010065 195 CDKYGIPTAKYKTFTD------PNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVI 268 (519)
Q Consensus 195 l~~~Gi~~p~~~~v~~------~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~l 268 (519)
|+++|||+|++..+.+ .+++.+..++++||+||||.++++|.||.++++.+||..+++.++. .++.+|
T Consensus 138 l~~~GI~~p~~~~~~~~~~~~~~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~------~~~~vl 211 (347)
T PRK14572 138 FLQSGQKVAPFFELEKLKYLNSPRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFE------SDSKVM 211 (347)
T ss_pred HHHcCCCCCCEEEEEccccccChHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHh------cCCCEE
Confidence 9999999999988753 3344444567899999999999999999999999999999999864 457899
Q ss_pred EEeccCCcEEEEEEEEe---CC-eeEEec--cccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 010065 269 IEEFLEGEEASFFALVD---GE-NAIPLE--SAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGM 342 (519)
Q Consensus 269 vEe~I~G~E~sv~~l~d---g~-~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~ 342 (519)
|||||+|+|++|.++.+ |+ ..+.++ .......+++++.||+.++...++|++ ++++..+++++.+ .+++
T Consensus 212 VEefI~G~E~sv~vi~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a----~~~~ 286 (347)
T PRK14572 212 SQSFLSGTEVSCGVLERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR-ISDQEMKRVQELA----IRAH 286 (347)
T ss_pred EEcCcccEEEEEEEEeCccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECCC-CCHHHHHHHHHHH----HHHH
Confidence 99999999999999963 32 222222 233334678889999888888888998 8999888888877 4688
Q ss_pred HHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHh
Q 010065 343 SAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR----LESDLAEVLLAACR 400 (519)
Q Consensus 343 ~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~ 400 (519)
+++|+. |++|+||+++++ ++|++|||++||++.. ++++. .|+++.+++..++.
T Consensus 287 ~~Lg~~--G~~rvD~~~~~~--~~~vlEiNt~PG~t~~-S~~p~~~~~~G~~~~~l~~~ii~ 343 (347)
T PRK14572 287 ESLGCK--GYSRTDFIIVDG--EPHILETNTLPGMTET-SLIPQQAKAAGINMEEVFTDLIE 343 (347)
T ss_pred HHhCCc--ceeEEEEEEECC--cEEEEeeeCCCCCCcc-cHHHHHHHHcCCCHHHHHHHHHH
Confidence 999987 999999999854 5999999999999987 66664 39999999888764
No 14
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=2.7e-43 Score=350.83 Aligned_cols=283 Identities=17% Similarity=0.127 Sum_probs=224.6
Q ss_pred cceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCC
Q 010065 54 SSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDV 133 (519)
Q Consensus 54 ~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~ 133 (519)
+++||+||+||.|+||+||+.||++ +..+|.+. |++++.++.+.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~------------------v~~aL~~~-g~~~~~~~~~~----------------- 45 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKA------------------VLDSLISQ-GYDAVGVDASG----------------- 45 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHH------------------HHHHHHHc-CCEEEEEcCCc-----------------
Confidence 3789999999999999999999876 68888776 99988774210
Q ss_pred CCHHHHHHHHHHcCCcEEEE---C--CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeec
Q 010065 134 LDGDAVISFCRKWSVGLVVV---G--PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTF 208 (519)
Q Consensus 134 ~d~~~l~~~~~~~~id~Vi~---g--~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v 208 (519)
..++..+.+.++|+||+ | +|++.+++ .|+.+|+||+|++++++.+++||..+|++|+++|||+|++..+
T Consensus 46 ---~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~---~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~ 119 (296)
T PRK14569 46 ---KELVAKLLELKPDKCFVALHGEDGENGRVSA---LLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFL 119 (296)
T ss_pred ---hhHHHHhhccCCCEEEEeCCCCCCCChHHHH---HHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEE
Confidence 01122233457999998 2 67876655 4999999999999999999999999999999999999999877
Q ss_pred CCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCe
Q 010065 209 TDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGEN 288 (519)
Q Consensus 209 ~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~ 288 (519)
.+.. ...+.++||+||||..+++|.||.++++.+||.++++.++. .+.+|||+||+|+|++|.++.++.
T Consensus 120 ~~~~---~~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~G~E~tv~vl~~~~- 188 (296)
T PRK14569 120 TDKL---VAEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVTGKEITVAIVNDEV- 188 (296)
T ss_pred chhh---hhHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEcccccEEEEEEEECCcC-
Confidence 6422 23467899999999999999999999999999999998753 257999999999999999984432
Q ss_pred eEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEE
Q 010065 289 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKL 368 (519)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~v 368 (519)
...........++++..+| .+.+....|+. ++++..+++++.+ .++++++|++ |++++||+++++| ++|+
T Consensus 189 -~~~~~i~~~~~~~~~~~k~-~~~~~~~~P~~-l~~~~~~~i~~~a----~~~~~~Lg~~--G~~rvD~~~~~~g-~~~v 258 (296)
T PRK14569 189 -YSSVWIEPQNEFYDYESKY-SGKSIYHSPSG-LCEQKELEVRQLA----KKAYDLLGCS--GHARVDFIYDDRG-NFYI 258 (296)
T ss_pred -cceEEEecCCCcCChhhcc-CCCcEEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCc--eEEEEEEEEcCCC-CEEE
Confidence 1111112223466666666 45566678988 8888777777766 5788999987 9999999999876 7999
Q ss_pred EEEeCCCCCCchHHHHHH----hCCCHHHHHHHHHh
Q 010065 369 IEYNVRFGDPECQVLMVR----LESDLAEVLLAACR 400 (519)
Q Consensus 369 iEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~~ 400 (519)
+|||||||++.. ++++. .|+++.+++..++.
T Consensus 259 lEIN~~Pg~t~~-s~~~~~~~~~G~~~~~li~~ii~ 293 (296)
T PRK14569 259 MEINSSPGMTDN-SLSPKSAAAEGVDFDSFVKRIIE 293 (296)
T ss_pred EEeeCCCCCCCc-CHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999876 55543 39999999988764
No 15
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=1.4e-41 Score=353.46 Aligned_cols=379 Identities=22% Similarity=0.267 Sum_probs=282.0
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC--CCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG--NAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAP 158 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~--~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~ 158 (519)
.+++|||+|+|.....++.++++. |++++.++.+ +++.. .++ ..+ ..|..|.+.+.++++++++|+|+++.|+.
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~-G~~v~~~~~~~~~~~~~-~ad-~~~-~~~~~d~~~l~~~~~~~~id~vi~~~e~~ 86 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRL-GVEVIAVDRYANAPAMQ-VAH-RSH-VIDMLDGDALRAVIEREKPDYIVPEIEAI 86 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCCCchHH-hhh-heE-ECCCCCHHHHHHHHHHhCCCEEEEeeCcC
Confidence 357999999996555677777766 9999888754 22222 111 122 45778899999999999999999988875
Q ss_pred hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCc
Q 010065 159 LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC-DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKG 237 (519)
Q Consensus 159 ~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l-~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~G 237 (519)
.... ...+++.|+++. ++++++.+++||..+|+++ +++|||+|++..+++.+++.+++++++||+|+||..+++|+|
T Consensus 87 ~~~~-~~~l~~~g~~~~-~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~g~P~VvKP~~g~~s~G 164 (395)
T PRK09288 87 ATDA-LVELEKEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIGYPCVVKPVMSSSGKG 164 (395)
T ss_pred CHHH-HHHHHhcCCeeC-CCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhcCCCEEEEeCCCcCCCC
Confidence 4444 345677799875 8999999999999999999 489999999999999999999889999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEEEeCC-eeEEeccccccccccCCCCCCCCCCceE
Q 010065 238 VIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNTGGMGA 315 (519)
Q Consensus 238 V~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 315 (519)
|+++++.+|+.++++.+..... ..+..+||||||+ |.|+++.++++++ ....+.... +.. .++. ....
T Consensus 165 v~~v~~~~el~~~~~~~~~~~~--~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~~~~~-~~~-~~~~------~~~~ 234 (395)
T PRK09288 165 QSVVRSPEDIEKAWEYAQEGGR--GGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIG-HRQ-EDGD------YRES 234 (395)
T ss_pred eEEECCHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCcc-cEE-ECCE------EEEE
Confidence 9999999999999998753210 0136899999999 6999999998544 333222221 111 0100 1234
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHH
Q 010065 316 YSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVL 395 (519)
Q Consensus 316 ~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~ 395 (519)
+.|+. ++++..+++.+.+ .+++.+++ ++|++|+||++++++ +|++|+|||+|++.++.+.. .|+|+++++
T Consensus 235 ~~p~~-l~~~~~~~i~~~~----~~~~~~L~--~~G~~~ve~~~~~~~--~~viEinpR~~~~~~~~~~~-~g~~~~~~~ 304 (395)
T PRK09288 235 WQPQP-MSPAALEEAQEIA----KKVTDALG--GRGLFGVELFVKGDE--VYFSEVSPRPHDTGMVTLIS-QNLSEFELH 304 (395)
T ss_pred ECCCC-CCHHHHHHHHHHH----HHHHHHcC--CeeEEEEEEEEeCCe--EEEEEecCCCCCCcceeeee-cccCHHHHH
Confidence 56887 8888888877765 46778888 459999999999876 99999999999887654443 399999999
Q ss_pred HHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEE
Q 010065 396 LAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTA 475 (519)
Q Consensus 396 i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~ 475 (519)
++.++|... ..+.+....++.+++...+++ ...+.+++++. ..+++.+...+.. ..+.++|+|+|++
T Consensus 305 ~~~~lG~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~-~~~g~~~~~~~k~------~~~~~~~lG~v~~ 371 (395)
T PRK09288 305 ARAILGLPI-PDIRLYSPAASAVILAEGESA-----NPSFDGLAEAL-AVPGTDVRLFGKP------EIRGGRRMGVALA 371 (395)
T ss_pred HHHHcCCCC-CcccccCCceeEEEecccccc-----ccchhhHHHHh-cCCCCEEEEecCC------CCCCCCeeEEEEe
Confidence 999999632 233333445666776654444 12344555432 2355554443321 1246789999999
Q ss_pred ecCCHHHHHHHHHHHhhccccCC
Q 010065 476 KGKDVEEAQDRAYLAVEEINWPG 498 (519)
Q Consensus 476 ~g~t~~ea~~~a~~~~~~i~~~g 498 (519)
.|+|.++|+++++++.+.|++.|
T Consensus 372 ~g~~~~~a~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 372 TGEDVEEAREKAKEAASKVKVVG 394 (395)
T ss_pred ecCCHHHHHHHHHHHHhheeecc
Confidence 99999999999999999999876
No 16
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=2.5e-41 Score=356.21 Aligned_cols=410 Identities=19% Similarity=0.187 Sum_probs=287.9
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-C-C-CCcCCCCCcc-cc-C---CCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-N-A-GISNSGDATC-IP-D---LDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~-~-~~~~~~~~~~-v~-~---~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.+||||+|+|..+..+++++++. |++++.++++ + . .....++... +. . -++.|.+.++++|+++++|+|+|
T Consensus 2 ~kkili~g~g~~~~~~~~aa~~l-G~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (449)
T TIGR00514 2 LDKILIANRGEIALRILRACKEL-GIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHP 80 (449)
T ss_pred cceEEEeCCCHHHHHHHHHHHHc-CCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEe
Confidence 46999999998888888888876 9999998653 2 1 1111222111 10 0 13456789999999999999999
Q ss_pred CC----ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEE
Q 010065 154 GP----EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g~----E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~Vv 227 (519)
+. |+.. +++.++++|++++|++++++.+++||..++++|+++|||+|++. .+.+.+++.+++++++||+|+
T Consensus 81 g~g~~se~~~---~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~Pvvv 157 (449)
T TIGR00514 81 GYGFLSENAN---FAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVII 157 (449)
T ss_pred CCCccccCHH---HHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEE
Confidence 53 5553 56679999999999999999999999999999999999999874 677889988888999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCCC
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~~ 305 (519)
||..++||+||+++++.+|+.++++.+.....-......++|||||+| +|+++.++.|+ +.+..+..... ....
T Consensus 158 KP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~--~~~~-- 233 (449)
T TIGR00514 158 KATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDC--SIQR-- 233 (449)
T ss_pred EeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEecccc--Ccee--
Confidence 999999999999999999999999876532100012467999999998 89999999864 33443322110 0000
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH
Q 010065 306 TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV 385 (519)
Q Consensus 306 ~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~ 385 (519)
.........|+..++++..+++++.+ .+++.++|+. |++|+||+++++| ++||+|||||++++.. ....
T Consensus 234 ---~~~~~~~~~p~~~l~~~~~~~i~~~a----~~~~~~lg~~--G~~~vef~~~~~g-~~~viEiNpR~~~~~~-~~~~ 302 (449)
T TIGR00514 234 ---RHQKLLEEAPSPALTPELRRKMGDAA----VKAAVSIGYR--GAGTVEFLLDKNG-EFYFMEMNTRIQVEHP-VTEM 302 (449)
T ss_pred ---cccceEEECCCCCCCHHHHHHHHHHH----HHHHHHCCCc--ceEEEEEEEeCCC-CEEEEEEECCCCCCcc-eeeh
Confidence 00011223465558888888888876 4677888875 9999999999776 6999999999987643 2334
Q ss_pred HhCCCHHHHHHHHHhCCCCCCCc-cc-CCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEEEeeeeecCCC
Q 010065 386 RLESDLAEVLLAACRGELTGVTL-NW-SPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIFHAGTALDADG 461 (519)
Q Consensus 386 ~~G~d~~~~~i~~~~g~~~~~~~-~~-~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (519)
.+|+|+.++++++++|....... .. .+++++..++..+..-.. +..+ .+..+.. ...+++++... . ..|
T Consensus 303 ~tGvdl~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g-~~~~~~~--~~~~gv~~~~~-~---~~G 375 (449)
T TIGR00514 303 ITGVDLIKEQIRIAAGEPLSLKQEDVVVRGHAIECRINAEDPIKTFLPSPG-RITRYLP--PGGPGVRWDSH-V---YSG 375 (449)
T ss_pred hcCCcHHHHHHHHHCCCCCCCccccCCCceEEEEEEeeccCCCCCeeeCCC-EEEEEEc--CCCCCEeeccC-c---cCC
Confidence 57999999999999998544321 11 235666666555431011 1111 1211110 01123332110 1 123
Q ss_pred cEEe--cCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeecccccccccccccccc
Q 010065 462 NFIA--TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 462 ~~~~--~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~ 517 (519)
.... ..+|+|+|+++|+|++||.+++.++++.++++| .+.|+=+.+++|...++-|
T Consensus 376 ~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g~~tn~~~l~~~~~~~~f~~~~~~t 438 (449)
T TIGR00514 376 YTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDGIKTTIPFHQRILEDENFQHGGTNI 438 (449)
T ss_pred CEeCccccccceEEEEEcCCHHHHHHHHHHHHhhcEEeCccCCHHHHHHHhcChhhcCCceee
Confidence 2221 336999999999999999999999999999998 2455555667777666554
No 17
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=7.2e-41 Score=346.36 Aligned_cols=374 Identities=20% Similarity=0.221 Sum_probs=278.4
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
||+|||+|.....+++++++. |++++.++++.... ...++ ..+ ..+..|.+.+.++++++++|+|++..|+.....
T Consensus 1 kililG~g~~~~~l~~aa~~~-G~~v~~~d~~~~~~~~~~ad-~~~-~~~~~d~~~l~~~~~~~~id~v~~~~e~v~~~~ 77 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL-GVEVIAVDRYANAPAMQVAH-RSY-VINMLDGDALRAVIEREKPDYIVPEIEAIATDA 77 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCCCCchhhhCc-eEE-EcCCCCHHHHHHHHHHhCCCEEEeccCccCHHH
Confidence 689999997777888888776 99999887652221 11222 222 357788999999999999999999877654333
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEe
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC-DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVA 241 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l-~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v 241 (519)
...+++.|+|+. ++++++.+++||..+++++ +++|||+|++..+++.+++.+++++++||+|+||.++++|+||.++
T Consensus 78 -~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v 155 (380)
T TIGR01142 78 -LFELEKEGYFVV-PNARATKLTMNREGIRRLAAEELGLPTSRYMFADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVV 155 (380)
T ss_pred -HHHHHhcCCeeC-CCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcCCCEEEEECCCcCCCCeEEE
Confidence 456788998864 8999999999999999985 8999999999999999999888899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEE--eCCeeEEeccccccccccCCCCCCCCCCceEEec
Q 010065 242 MTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALV--DGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSP 318 (519)
Q Consensus 242 ~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~--dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P 318 (519)
++.+|+.++++.+..... ..++.+||||||+| .|+++.+++ ||+... ........ . +..+ ..++.|
T Consensus 156 ~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~-~~~~~~~~--~--~~~~----~~~~~p 224 (380)
T TIGR01142 156 RGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDGNTTF-CAPIGHRQ--I--DGDY----HESWQP 224 (380)
T ss_pred CCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCCCEEE-ecCcceEE--e--CCee----EEEECC
Confidence 999999999988753210 12468999999997 899998886 444222 21111110 0 1111 134678
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 319 APVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 319 ~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
+. ++++..+++.+.+ .+++.++|+. |++|+||++++++ +||+|||||||++.++.+.. .|+|++++++++
T Consensus 225 ~~-l~~~~~~~i~~~a----~~~~~~l~~~--G~~~ie~~~~~~~--~~viEinpR~~~~~~~~~~~-~g~~~~~~~~r~ 294 (380)
T TIGR01142 225 QE-MSEKALEEAQRIA----KRITDALGGY--GLFGVELFVKGDE--VIFSEVSPRPHDTGMVTLIS-QGLSEFALHVRA 294 (380)
T ss_pred CC-CCHHHHHHHHHHH----HHHHHHcCCc--ceEEEEEEEECCc--EEEEEeecCCCCCceEEeee-cCCCHHHHHHHH
Confidence 87 8988888887766 4688889864 9999999999776 99999999999887754443 399999999999
Q ss_pred HhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecC
Q 010065 399 CRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGK 478 (519)
Q Consensus 399 ~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~ 478 (519)
++|..... ......+++.+++... .+. ...+.+++++.+ .+++.++.++.. | ...++|+|+|++.|+
T Consensus 295 ~~G~~~~~-~~~~~~~~~~~i~~~~--~g~---~~~~~~~~~~~~-~~~~~~~~~~k~----~--~~~~~~~G~v~~~~~ 361 (380)
T TIGR01142 295 ILGLPIPG-IPQLGPAASAVIKAKV--TGY---SPAFRGLEKALS-VPNTQVRLFGKP----E--AYVGRRLGVALATAK 361 (380)
T ss_pred HcCCCCCC-ccccCCceEEEEEccc--ccc---cchhhHHHHHHc-CCCCEEEECCCC----c--CCCCCcCEEEEEecC
Confidence 99974332 2222235555655432 121 123455555433 345555554322 2 246699999999999
Q ss_pred CHHHHHHHHHHHhhcccc
Q 010065 479 DVEEAQDRAYLAVEEINW 496 (519)
Q Consensus 479 t~~ea~~~a~~~~~~i~~ 496 (519)
|.+++.++++++.+.|++
T Consensus 362 s~~~~~~~~~~~~~~i~~ 379 (380)
T TIGR01142 362 SVEAARERAEEVAHAVEV 379 (380)
T ss_pred CHHHHHHHHHHHHhhccC
Confidence 999999999999998876
No 18
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=3.4e-40 Score=347.66 Aligned_cols=409 Identities=18% Similarity=0.183 Sum_probs=285.9
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CC-CC-cCCCCCccccCC-------CCCCHHHHHHHHHHcCCcEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NA-GI-SNSGDATCIPDL-------DVLDGDAVISFCRKWSVGLV 151 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~-~~-~~~~~~~~v~~~-------d~~d~~~l~~~~~~~~id~V 151 (519)
.+||||+|.|..+.++++++++. |++++.+... |. .. ...++ ..+ .+ +..|.+.++++|+++++|+|
T Consensus 4 ~k~ili~~~g~~~~~~~~~~~~~-G~~~v~~~~~~d~~~~~~~~ad-~~~-~~~~~~~~~~y~~~~~l~~~~~~~~~D~i 80 (445)
T PRK08462 4 IKRILIANRGEIALRAIRTIQEM-GKEAIAIYSTADKDALYLKYAD-AKI-CIGGAKSSESYLNIPAIISAAEIFEADAI 80 (445)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCCEEEEechhhcCCchhhhCC-EEE-EeCCCchhcccCCHHHHHHHHHHcCCCEE
Confidence 57999999998888889998877 9999988532 22 11 11121 111 12 45678999999999999999
Q ss_pred EECCCh-hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEEE
Q 010065 152 VVGPEA-PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 152 i~g~E~-~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~VvK 228 (519)
+|+.+. .....+++.++.+|++++|++++++.+++||..||++|+++|||+|++. .+.+.+++.+++++++||+|+|
T Consensus 81 ~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvK 160 (445)
T PRK08462 81 FPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILK 160 (445)
T ss_pred EECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEE
Confidence 996322 1113466779999999999999999999999999999999999999864 5778899988899999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDG 304 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~ 304 (519)
|.+|+||+|++++++.+||.++++.+... ..+ .++.++||+||+| +|+++.++.++ +.+..+...... ....
T Consensus 161 P~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~--~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~--~~~~ 236 (445)
T PRK08462 161 AAAGGGGRGMRVVEDESDLENLYLAAESEALSAF--GDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCS--LQRR 236 (445)
T ss_pred eCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhcc--CCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEecccc--ceec
Confidence 99999999999999999999988765321 112 2357999999996 89999999754 234433221100 0000
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH
Q 010065 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384 (519)
Q Consensus 305 ~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~ 384 (519)
..++ ....|+..++++..+++.+.+ .++++++|+. |++++||++++++ ++||+|||||++++.. ...
T Consensus 237 ~~~~-----~~~~p~~~l~~~~~~~i~~~a----~~~~~alg~~--G~~~ve~~~~~~g-~~~viEiNpR~~~~~~-~~~ 303 (445)
T PRK08462 237 HQKL-----IEESPAVVLDEKTRERLHETA----IKAAKAIGYE--GAGTFEFLLDSNL-DFYFMEMNTRLQVEHT-VSE 303 (445)
T ss_pred ccce-----EEEcCCCCCCHHHHHHHHHHH----HHHHHHcCCC--CcceEEEEEeCCC-CEEEEEEECCcCcCcc-eeh
Confidence 0111 123466558888888888776 4688899987 9999999999876 6999999999977543 223
Q ss_pred HHhCCCHHHHHHHHHhCCCCCCCc-ccCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEEEeeeeecCCC
Q 010065 385 VRLESDLAEVLLAACRGELTGVTL-NWSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIFHAGTALDADG 461 (519)
Q Consensus 385 ~~~G~d~~~~~i~~~~g~~~~~~~-~~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (519)
..+|+|+.++++++++|....... ....++++...+.... |.. +..+ .+..+... ....+++... . ..|
T Consensus 304 ~~~Gidl~~~~i~~a~G~~l~~~~~~~~~~~a~~~~~~~~~-~~~~~p~~G-~l~~~~~~--~~~~~r~~~~-~---~~g 375 (445)
T PRK08462 304 MVSGLDLIEWMIKIAEGEELPSQESIKLKGHAIECRITAED-PKKFYPSPG-KITKWIAP--GGRNVRMDSH-A---YAG 375 (445)
T ss_pred hhhCCCHHHHHHHHHCCCCcccccccCCceeEEEEEeccCC-CCceecccC-EEeEEEcC--CCCCEEEccC-c---CCC
Confidence 446999999999999998433211 1123455554443321 110 0011 11111100 0012222210 0 112
Q ss_pred cEE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeeccccccccccccccccC
Q 010065 462 NFI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFATR 518 (519)
Q Consensus 462 ~~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~~ 518 (519)
... ...+|+|+|+++|+|.++|.+++.++++.+++.| .+.|+=+.+++|...++-|+
T Consensus 376 ~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (445)
T PRK08462 376 YVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVEGIKTTIPFHLEMMENADFINNKYDTK 439 (445)
T ss_pred CEeChhhccCccEEEEEcCCHHHHHHHHHHHHHhcEEECccCCHHHHHHHhcChhhcCCceech
Confidence 111 2357999999999999999999999999999998 35666667788877766664
No 19
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=4.4e-41 Score=336.22 Aligned_cols=281 Identities=17% Similarity=0.160 Sum_probs=222.7
Q ss_pred eeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCC
Q 010065 56 FFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLD 135 (519)
Q Consensus 56 ~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d 135 (519)
|||+|||||.|+||+||+.|+.. +..+|.+. |+++..++.+..
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~------------------i~~al~~~-g~~~~~i~~~~~------------------ 43 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGER------------------VKKALEKL-GYEVTVFDVDED------------------ 43 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHH------------------HHHHHHHc-CCeEEEEccCch------------------
Confidence 79999999999999999999876 68888766 998877742210
Q ss_pred HHHHHHHHHHcCCcEEEE---C--CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCC
Q 010065 136 GDAVISFCRKWSVGLVVV---G--PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTD 210 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~---g--~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~ 210 (519)
.+..+.+..++|+||+ | +|++.++++ ++.+|+|++|+++.++.+++||..++++++ .|||+|++..+.+
T Consensus 44 --~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~---le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~~~~ 117 (299)
T PRK14571 44 --FLKKVDQLKSFDVVFNVLHGTFGEDGTLQAI---LDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVEIKE 117 (299)
T ss_pred --HHHHhhhccCCCEEEEeCCCCCCCccHHHHH---HHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEEEec
Confidence 0111112246899998 2 578766555 999999999999999999999999999998 5899999988865
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCC--e
Q 010065 211 PNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE--N 288 (519)
Q Consensus 211 ~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~--~ 288 (519)
.. ..+.++||+|+||..++||.||.+++|.+|+.++++.++. ....+||||||+|+|++|.++.+++ .
T Consensus 118 ~~----~~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~------~~~~vlVEeyI~G~E~sv~vl~~~~~~~ 187 (299)
T PRK14571 118 FM----KTSPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLP------RYGSVIVQEYIPGREMTVSILETEKGFE 187 (299)
T ss_pred hh----hhhhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHh------hCCcEEEEccccceEEEEEEEcCCCCee
Confidence 32 2356899999999999999999999999999999988763 3468999999999999999998654 2
Q ss_pred eEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEE
Q 010065 289 AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKL 368 (519)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~v 368 (519)
++++........++++..++..+......|++ ++++..+++++.+ .+++.++|+. |++++||+++++ ++||
T Consensus 188 vl~~~e~~~~~~~~~~~~k~~~g~~~~~~p~~-l~~~~~~~i~~~a----~~~~~~lg~~--g~~rvD~~~~~~--~~~v 258 (299)
T PRK14571 188 VLPILELRPKRRFYDYVAKYTKGETEFILPAP-LNPEEERLVKETA----LKAFVEAGCR--GFGRVDGIFSDG--RFYF 258 (299)
T ss_pred eeceEEEecCCCccccccccCCCCeeEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCC--ceEEEEEEEECC--cEEE
Confidence 33333232333466777778767666677988 8999888888876 4688999987 999999999864 5999
Q ss_pred EEEeCCCCCCchHHHHHH----hCCCHHHHHHHHH
Q 010065 369 IEYNVRFGDPECQVLMVR----LESDLAEVLLAAC 399 (519)
Q Consensus 369 iEiN~R~G~~~~~~~~~~----~G~d~~~~~i~~~ 399 (519)
+|||++||++.. +.++. .|+++.+++..++
T Consensus 259 iEiN~~Pg~~~~-s~~~~~~~~~G~~~~~li~~ii 292 (299)
T PRK14571 259 LEINTVPGLTEL-SDLPASAKAGGIEFEELVDIII 292 (299)
T ss_pred EEeeCCCCCCcc-CHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999876 54443 3999999776654
No 20
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=4.9e-40 Score=346.08 Aligned_cols=409 Identities=20% Similarity=0.197 Sum_probs=287.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CC--CCcCCCCCccc-cCC----CCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NA--GISNSGDATCI-PDL----DVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~--~~~~~~~~~~v-~~~----d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.+||||+|+|..+..+++++++. |++++.+... +. .....++...+ ... ...|.+.++++|++.++|+|+|
T Consensus 2 ~kkvli~g~G~~~~~~~~aa~~l-G~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p 80 (447)
T PRK05586 2 FKKILIANRGEIAVRIIRACREM-GIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHP 80 (447)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-CCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEc
Confidence 36999999998888888888876 9998777422 21 11111221111 011 1225688999999999999998
Q ss_pred C----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCe--eecCCHHHHHHHHHHhCCCEEE
Q 010065 154 G----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY--KTFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~--~~v~~~~~~~~~~~~~g~P~Vv 227 (519)
+ +|+. .++..++..|++++|++++++.+++||..+|++++++|||+|++ ..+.+.+++.+++++++||+||
T Consensus 81 ~~~~~~E~~---~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvv 157 (447)
T PRK05586 81 GFGFLSENS---KFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMV 157 (447)
T ss_pred CccccccCH---HHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEE
Confidence 5 5665 45666899999999999999999999999999999999999997 4678899998888999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhhc--cCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccC
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLKN--AFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGD 303 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~~--~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~ 303 (519)
||.+++||+|++++++.+|+.++++.+.... .+ .++.++||+||+| +|+++.+++|+ +++..+...... ..
T Consensus 158 KP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~--~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~--~~- 232 (447)
T PRK05586 158 KASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAF--GDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCS--LQ- 232 (447)
T ss_pred EECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhc--CCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecc--eE-
Confidence 9999999999999999999999998765321 12 1367999999998 89999999864 344444321100 00
Q ss_pred CCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHH
Q 010065 304 GDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVL 383 (519)
Q Consensus 304 ~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~ 383 (519)
.+........|++.+++++.+++.+.+ .++++++|+. |++++||+++++| ++||+|||||+|++.. ..
T Consensus 233 ----~~~~~~~~~~p~~~l~~~~~~~l~~~a----~~i~~aLg~~--g~~~vEf~~~~~g-~~~~iEvNpR~~~~~~-~t 300 (447)
T PRK05586 233 ----RRNQKVLEEAPSPVMTEELRKKMGEIA----VKAAKAVNYK--NAGTIEFLLDKDG-NFYFMEMNTRIQVEHP-IT 300 (447)
T ss_pred ----ecccceEEEcCCCCCCHHHHHHHHHHH----HHHHHHcCCc--ceeEEEEEEcCCC-CEEEEEEECCCCCCcc-ce
Confidence 000112334576558888888887776 4677888876 9999999999876 8999999999987654 33
Q ss_pred HHHhCCCHHHHHHHHHhCCCCCCC-cc-cCCCcEEEEEEecCCCCC--CCCCCcccccchhhhccCCCeEEEEeeeeecC
Q 010065 384 MVRLESDLAEVLLAACRGELTGVT-LN-WSPGSAMVVVMASKGYPG--SYEKGSEIQNLEEAEQVAPSVKIFHAGTALDA 459 (519)
Q Consensus 384 ~~~~G~d~~~~~i~~~~g~~~~~~-~~-~~~~~a~~~~l~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 459 (519)
...+|+|++++++++++|...... .. ...++++...+..+.-.. .+..| .+..+..- ...++++... . .
T Consensus 301 ~~~tGid~~~~~i~~a~G~~l~~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G-~~~~~~~~--~~~~vr~~~~-~---~ 373 (447)
T PRK05586 301 EMITGVDLVKEQIKIAYGEKLSIKQEDIKINGHSIECRINAEDPKNGFMPCPG-KIEELYIP--GGLGVRVDSA-V---Y 373 (447)
T ss_pred ehhhCCCHHHHHHHHHcCCCCCCcccccCcCceEEEEEeeccCcccCccCCCC-EEEEEEcC--CCCCeEeecc-c---c
Confidence 345799999999999999843321 11 123567776655543111 11111 22222110 0122332210 0 1
Q ss_pred CCcE--EecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eeccccccccccccccccC
Q 010065 460 DGNF--IATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQFATR 518 (519)
Q Consensus 460 ~g~~--~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~~~~ 518 (519)
.|.. ....+++|+|+++|+|.++|++++.++++.+.+.|. +.|+=+.++.|....+.|+
T Consensus 374 ~g~~v~~~~~~~~~~vi~~g~~~~~a~~~~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~t~ 439 (447)
T PRK05586 374 SGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEGVNTNIDFQFIILEDEEFIKGTYDTS 439 (447)
T ss_pred CCCccCCccCchhheeEEEcCCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCccccH
Confidence 1211 123469999999999999999999999999999992 4455555677766665553
No 21
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=1.4e-39 Score=343.53 Aligned_cols=409 Identities=20% Similarity=0.219 Sum_probs=289.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CC--CCcCCCCCcc-cc----CCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NA--GISNSGDATC-IP----DLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~--~~~~~~~~~~-v~----~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.+||||+|.|.....+++++++. |++++.+.++ +. .....++... +. .-+..|.+.+++++++.++|+|+|
T Consensus 5 ~~~vLi~~~geia~~ii~aa~~l-G~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~p 83 (467)
T PRK12833 5 IRKVLVANRGEIAVRIIRAAREL-GMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHP 83 (467)
T ss_pred CcEEEEECCcHHHHHHHHHHHHc-CCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEEE
Confidence 47999999998777888888776 9999877532 11 1111121111 10 114567899999999999999999
Q ss_pred C----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEE
Q 010065 154 G----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~Vv 227 (519)
+ +|.. .+++.++..|++++|++++++.++.||..+|++++++|||+|++. .+.+.+++.++++++|||+|+
T Consensus 84 g~g~lsE~~---~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvv 160 (467)
T PRK12833 84 GYGFLSENA---AFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMI 160 (467)
T ss_pred CCCccccCH---HHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEE
Confidence 5 3554 345668999999999999999999999999999999999999885 788999999999999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCCeeEEeccccccccccCC
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGENAIPLESAQDHKRVGDG 304 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~~~~~~~~~~~~~~~~~~ 304 (519)
||..++||+|++++++.+||.++++.+... ..+ .++.++||+||+| +|+++.++.|++.++.+...... ....
T Consensus 161 Kp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~--~~~~vlvEefi~~~~ei~v~v~~dg~~~~~~~~~~~~--~~r~ 236 (467)
T PRK12833 161 KAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAF--GDGGVYLERFIARARHIEVQILGDGERVVHLFERECS--LQRR 236 (467)
T ss_pred EECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhc--CCCcEEEEecCCCCEEEEEEEEeCCCcEEEEEEeecc--cccC
Confidence 999999999999999999999998876432 122 2467999999995 99999999988654443321100 0000
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH
Q 010065 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384 (519)
Q Consensus 305 ~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~ 384 (519)
.. ......|+..++++..+++.+.+ .++++++|+. |++++||+++++++++||||||||++++.. ...
T Consensus 237 ~~-----ki~e~~p~~~l~~~~~~~l~~~a----~~~~~alg~~--G~~~vEf~~~~~~g~~~~iEvNpR~~~~~~-~te 304 (467)
T PRK12833 237 RQ-----KILEEAPSPSLTPAQRDALCASA----VRLARQVGYR--GAGTLEYLFDDARGEFYFIEMNTRIQVEHP-VTE 304 (467)
T ss_pred Cc-----cEEEECCCCCCCHHHHHHHHHHH----HHHHHHcCCc--CcceEEEEEecCCCCEEEEEEECCCCcchh-hhH
Confidence 00 11234465458888888888776 4677888876 999999999864337999999999987543 333
Q ss_pred HHhCCCHHHHHHHHHhCCCCCCCc--ccCCCcEEEEEEecCCCCCC---CCCCcccccchhhhccCCCeEEEEeeeeecC
Q 010065 385 VRLESDLAEVLLAACRGELTGVTL--NWSPGSAMVVVMASKGYPGS---YEKGSEIQNLEEAEQVAPSVKIFHAGTALDA 459 (519)
Q Consensus 385 ~~~G~d~~~~~i~~~~g~~~~~~~--~~~~~~a~~~~l~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 459 (519)
..+|+|+.+++++++.|....... ....++++...+..+. |.. +..+ .+..+... ..+++++-. .. .
T Consensus 305 ~~tGvdl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-~~~~~~p~~g-~i~~~~~~--~~~gvr~d~-~~---~ 376 (467)
T PRK12833 305 AITGIDLVQEMLRIADGEPLRFAQGDIALRGAALECRINAED-PLRDFFPNPG-RIDALVWP--QGPGVRVDS-LL---Y 376 (467)
T ss_pred HHhCCCHHHHHHHHHCCCCCCCCccccCcceEEEEEEEeccc-CCCCcccCCC-EEEEEEcC--CCCCeEEec-ce---e
Confidence 457999999999999998544221 1223667766665432 110 1111 12222110 113333211 11 1
Q ss_pred CCcEE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeeccccccccccccccccC
Q 010065 460 DGNFI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFATR 518 (519)
Q Consensus 460 ~g~~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~~ 518 (519)
.|... ...+++++|+++|+|+++|++++.++++.+++.| .|.++=+.++.|...++.|+
T Consensus 377 ~G~~v~~~~ds~l~~vi~~g~~~~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~ 442 (467)
T PRK12833 377 PGYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRIDGMKTTAPLHRALLADADVRAGRFHTN 442 (467)
T ss_pred CcCEeCCCcCcchheEEEEcCCHHHHHHHHHHHHHhcEeECccCCHHHHHHHhcChhhcCCCcccH
Confidence 12222 1346899999999999999999999999999998 35666666777766666553
No 22
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=1e-39 Score=344.82 Aligned_cols=408 Identities=22% Similarity=0.217 Sum_probs=284.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CC-CC-cCCCCCccc-cC----CCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NA-GI-SNSGDATCI-PD----LDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~-~~-~~~~~~~~v-~~----~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
++||||+|+|.....+++++++. |++++.++++ +. .. ...++...+ .+ -+..|.+.++++|+++++|+|+|
T Consensus 2 ~k~iLi~g~g~~a~~i~~aa~~~-G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 2 FDKILIANRGEIALRIIRACKEL-GIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred cceEEEECCCHHHHHHHHHHHHc-CCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 47999999998778888888877 9999888543 21 11 111221111 01 13346889999999999999999
Q ss_pred CC----ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCe--eecCCHHHHHHHHHHhCCCEEE
Q 010065 154 GP----EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY--KTFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g~----E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~--~~v~~~~~~~~~~~~~g~P~Vv 227 (519)
+. |+. .+++.++.+|+|++|++++++.+++||..|+++++++|||+|++ ..+++.+++.+++++++||+|+
T Consensus 81 ~~~~~~e~~---~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~Pvvv 157 (451)
T PRK08591 81 GYGFLSENA---DFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVII 157 (451)
T ss_pred CCCccccCH---HHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEE
Confidence 63 554 35667999999999999999999999999999999999999987 4678999999999999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhhc--cCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccC
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLKN--AFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGD 303 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~~--~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~ 303 (519)
||..++||+|++++++.+|+.++++.+.... .+ .++.++|||||+| +|+++.+++|+. .+..+..... ....
T Consensus 158 KP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~--~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~--~~~~ 233 (451)
T PRK08591 158 KATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAF--GNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDC--SLQR 233 (451)
T ss_pred EECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhc--CCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEecccc--ccee
Confidence 9999999999999999999999998865321 12 2467999999997 799999998763 4443321110 0000
Q ss_pred CCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHH
Q 010065 304 GDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVL 383 (519)
Q Consensus 304 ~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~ 383 (519)
... ......|+..++++..+++.+.+ .++++++|+. |++|+||+++++| ++||+|||||++++.. ..
T Consensus 234 ~~~-----~~~~~~p~~~l~~~~~~~l~~~a----~~~~~~lg~~--G~~~vEf~~~~~g-~~~viEINpR~~~~~~-~~ 300 (451)
T PRK08591 234 RHQ-----KVLEEAPSPAITEELRRKIGEAA----VKAAKAIGYR--GAGTIEFLYEKNG-EFYFIEMNTRIQVEHP-VT 300 (451)
T ss_pred cce-----eEEEECCCCCCCHHHHHHHHHHH----HHHHHHcCCC--ceEEEEEEEcCCC-CEEEEEEECCCCccch-hh
Confidence 000 01223455448888888888766 4688889976 9999999999766 7999999999987643 33
Q ss_pred HHHhCCCHHHHHHHHHhCCCCCCCc--ccCCCcEEEEEEecCC--CCCCCCCCcccccchhhhccCCCeEEEEeeeeecC
Q 010065 384 MVRLESDLAEVLLAACRGELTGVTL--NWSPGSAMVVVMASKG--YPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDA 459 (519)
Q Consensus 384 ~~~~G~d~~~~~i~~~~g~~~~~~~--~~~~~~a~~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 459 (519)
...+|+|+.++++++++|....... ....++++...+..+. +.-.+..+ .+..+.. . ..+++.+.. .. .
T Consensus 301 ~~~~Gvdl~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g-~~~~~~~-~-~~~~v~~~~-~~---~ 373 (451)
T PRK08591 301 EMITGVDLVKEQIRIAAGEPLSIKQEDIVFRGHAIECRINAEDPAKNFMPSPG-KITRYHP-P-GGPGVRVDS-AV---Y 373 (451)
T ss_pred hhhhCCCHHHHHHHHHCCCCCCCcccccCcCceEEEEEEeeecCccCcccCCC-EeeEEEc-C-CCCCeeecc-cc---c
Confidence 3457999999999999998443211 1123566665543322 10011111 1222110 0 011222111 01 1
Q ss_pred CCcE--EecCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeecccccccccccccccc
Q 010065 460 DGNF--IATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 460 ~g~~--~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~ 517 (519)
.|.. ..+.+++|+|+++|+|.++|.+++.++++.+++.| .+.++=+..+.|.+.++-|
T Consensus 374 ~g~~v~~~~~~~lg~vi~~g~~~~~~~~~~~~~l~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t 438 (451)
T PRK08591 374 TGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDGIKTTIPLHLRLLNDPNFQAGDYNI 438 (451)
T ss_pred CCCCcCccccCcceEEEEEcCCHHHHHHHHHHHHhhCEEECCCCCHHHHHHHhcCHhhhCCCccc
Confidence 1211 12446999999999999999999999999999998 2444445566666655544
No 23
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=4.1e-39 Score=340.43 Aligned_cols=395 Identities=21% Similarity=0.212 Sum_probs=272.5
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcCCCCCccccC-------CCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-ISNSGDATCIPD-------LDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~~~~~~v~~-------~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
+||||+|+|..+..+++++++. |++++.++++... ......++.... -+..|.+.++++++++++|+|+|+
T Consensus 3 ~~ililg~g~~~~~~~~~a~~l-G~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p~ 81 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKL-GIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPG 81 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHc-CCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEeC
Confidence 7899999998888888888776 9999988754221 111111111101 144578999999999999999996
Q ss_pred ----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCe--eecCCHHHHHHHHHHhCCCEEEE
Q 010065 155 ----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY--KTFTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 155 ----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~--~~v~~~~~~~~~~~~~g~P~VvK 228 (519)
+|.+ .+++.++.+|++++|++.+++.+++||..++++|+++|||+|++ ..+.+.+++.++++.++||+|+|
T Consensus 82 ~~~~~e~~---~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvK 158 (450)
T PRK06111 82 YGLLSENA---SFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLK 158 (450)
T ss_pred CCccccCH---HHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEE
Confidence 4664 45677999999999999999999999999999999999999986 55688888888889999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDG 304 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~ 304 (519)
|..++||+||.++++.+|+.++++.+... ..+ .+..++|||||+| +|+++.++.++ +....+..... .....
T Consensus 159 P~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~--~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~--~~~~~ 234 (450)
T PRK06111 159 ASAGGGGIGMQLVETEQELTKAFESNKKRAANFF--GNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWEREC--SVQRR 234 (450)
T ss_pred eCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhc--CCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecc--ccccc
Confidence 99999999999999999999999875421 111 2468999999998 78899988754 22332221110 00000
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH
Q 010065 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384 (519)
Q Consensus 305 ~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~ 384 (519)
. +. .....|++.+++++.+++.+.+ .+++.++|+. |++|+||+++++| ++||+|||||++++.. .+.
T Consensus 235 ~-~~----~~~~~p~~~~~~~~~~~i~~~a----~~~~~~lg~~--g~~~ve~~~~~~g-~~~viEiN~R~~~~~~-~~~ 301 (450)
T PRK06111 235 H-QK----VIEEAPSPFLDEETRKAMGERA----VQAAKAIGYT--NAGTIEFLVDEQK-NFYFLEMNTRLQVEHP-VTE 301 (450)
T ss_pred c-cc----eEEecCCCCCCHHHHHHHHHHH----HHHHHHcCCC--CceeEEEEEcCCC-CEEEEEEECCcCCcch-hhH
Confidence 0 00 1112355547777777777766 4677888877 9999999999876 7999999999977643 344
Q ss_pred HHhCCCHHHHHHHHHhCCCCCCCcc--cCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCc
Q 010065 385 VRLESDLAEVLLAACRGELTGVTLN--WSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGN 462 (519)
Q Consensus 385 ~~~G~d~~~~~i~~~~g~~~~~~~~--~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 462 (519)
..+|+|+.++++++++|...+.... ...+.++...+.+..+.........+..++. . ...++.+. ... ..|.
T Consensus 302 ~~~Gvd~~~~~i~~~~G~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~G~~~~i~~-~-~~~~~~~~---~~~-~~G~ 375 (450)
T PRK06111 302 EITGIDLVEQQLRIAAGEKLSFTQDDIKRSGHAIEVRIYAEDPKTFFPSPGKITDLTL-P-GGEGVRHD---HAV-ENGV 375 (450)
T ss_pred HHhCcCHHHHHHHHhcCCCCCCccccCCcCceEEEEEEecCCCCCcccCCCeeCeEec-C-CCCCEEEE---ecc-cCCC
Confidence 4579999999999999974332211 1223344444333221111100001111110 0 01122211 101 1222
Q ss_pred EE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCeeeccccc
Q 010065 463 FI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGGFYRRDIG 506 (519)
Q Consensus 463 ~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~~~r~dig 506 (519)
.. ...+|+|+|++.|+|.++|+++++++++.|+++| .++++.
T Consensus 376 ~v~~~~~~~lg~vi~~g~~~~ea~~~~~~~~~~i~~~g--~~~~~~ 419 (450)
T PRK06111 376 TVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEG--IKTNIP 419 (450)
T ss_pred EeChhhcccceEEEEEeCCHHHHHHHHHHHHHhCEEeC--ccCCHH
Confidence 11 1246889999999999999999999999999999 455544
No 24
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=3.1e-39 Score=341.31 Aligned_cols=407 Identities=18% Similarity=0.188 Sum_probs=286.6
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCCcCCCCCcc---cc---CCCCCCHHHHHHHHHHcCCcEEEEC-
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGISNSGDATC---IP---DLDVLDGDAVISFCRKWSVGLVVVG- 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~~~~~~~~~---v~---~~d~~d~~~l~~~~~~~~id~Vi~g- 154 (519)
+||||+|.|.....+++++++. |++++.++.+. ........++. +. .-+..|.+.|+++++++++|+|+|+
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~-Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~ 81 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEM-GIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGY 81 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCC
Confidence 6999999998777888888877 99998886542 21111111111 10 1124568899999999999999995
Q ss_pred ---CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee--cCCHHHHHHHHHHhCCCEEEEe
Q 010065 155 ---PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT--FTDPNAAKQYIQEEGAPIVVKA 229 (519)
Q Consensus 155 ---~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~--v~~~~~~~~~~~~~g~P~VvKP 229 (519)
+|+. .+++.++++|+|++|++++++.+++||..+|++++++|||+|++.. +.+.+++.++++++|||+|+||
T Consensus 82 g~lse~~---~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp 158 (472)
T PRK07178 82 GFLSENA---ELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKA 158 (472)
T ss_pred CCcccCH---HHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEe
Confidence 3554 3567799999999999999999999999999999999999988764 7888999888999999999999
Q ss_pred CCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccCCC
Q 010065 230 DGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 230 ~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~ 305 (519)
..|+||+|++++++.+||.++++.+... ..+ .+..+++|+||++ +|+++.++.|+. .++.+..... ......
T Consensus 159 ~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~--~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~--s~~~~~ 234 (472)
T PRK07178 159 TSGGGGRGIRRCNSREELEQNFPRVISEATKAF--GSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDC--SIQRRN 234 (472)
T ss_pred CCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhc--CCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEcccc--ceEecC
Confidence 9999999999999999999998876432 112 2457999999976 899999998643 3333321110 000000
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH
Q 010065 306 TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV 385 (519)
Q Consensus 306 ~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~ 385 (519)
. ......|++.++++..+++.+.+ .++++++|+. |.+++||++++++ ++||+|||||++++.. ....
T Consensus 235 ~-----~~~e~~P~~~l~~~~~~~i~~~a----~~~~~aLg~~--g~~~vEf~~d~~g-~~y~iEiNpRl~~~~~-~te~ 301 (472)
T PRK07178 235 Q-----KLIEIAPSPQLTPEQRAYIGDLA----VRAAKAVGYE--NAGTVEFLLDADG-EVYFMEMNTRVQVEHT-ITEE 301 (472)
T ss_pred c-----ceEEECCCCCCCHHHHHHHHHHH----HHHHHHcCCC--ceeEEEEEEeCCC-CEEEEEEeCCcCCCcc-ceee
Confidence 0 11234577558998888888876 4677888876 9999999998766 6999999999977543 3334
Q ss_pred HhCCCHHHHHHHHHhCCCCCCC--cccCCCcEEEEEEecCCCCC--CCCCCcccccchhhhccCCCeEEEEeeeeecCCC
Q 010065 386 RLESDLAEVLLAACRGELTGVT--LNWSPGSAMVVVMASKGYPG--SYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADG 461 (519)
Q Consensus 386 ~~G~d~~~~~i~~~~g~~~~~~--~~~~~~~a~~~~l~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (519)
.+|+|+.++++++++|...... .....++++.+.+..+. |. .......+..+... ..+++++.. +. ..|
T Consensus 302 ~tGvdl~~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-~~~~f~p~~g~i~~~~~~--~~~~vr~d~-~~---~~g 374 (472)
T PRK07178 302 ITGIDIVREQIRIASGLPLSYKQEDIQHRGFALQFRINAED-PKNDFLPSFGKITRYYAP--GGPGVRTDT-AI---YTG 374 (472)
T ss_pred eeCcCHHHHHHHHHCCCCCCCccccCCcceEEEEEEEeeec-CCcCEecCceEEEEEEcC--CCCCeEEEe-cc---cCC
Confidence 5799999999999999844321 12234788888777654 21 00011123222111 112343321 11 123
Q ss_pred cEEe--cCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeecccccccccccccccc
Q 010065 462 NFIA--TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 462 ~~~~--~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~ 517 (519)
...+ .+..+|+|+++|+|+++|.+++.++++.+++.| .+.++=+.++.|...++.|
T Consensus 375 ~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t 437 (472)
T PRK07178 375 YTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQGVKTTIPYYQEILRNPEFRSGQFNT 437 (472)
T ss_pred CEeCcccCCccceEEEEcCCHHHHHHHHHHHHhhcEEeCccCCHHHHHHHhcCHhhcCCCccc
Confidence 2222 123459999999999999999999999999998 2344444456665555544
No 25
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=7.1e-39 Score=342.92 Aligned_cols=377 Identities=20% Similarity=0.165 Sum_probs=278.8
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
++++|+|||+|.....+++++++. |++++.++++.... ...++ ..+ ..+..|.+.+.+++++ +|+|....|...
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~l-G~~Vi~ld~~~~apa~~~AD-~~~-v~~~~D~~~l~~~a~~--~dvIt~e~e~v~ 95 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQM-GIKVKVLDPLEDCPASSVAA-RHV-VGSFDDRAAVREFAKR--CDVLTVEIEHVD 95 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCCCchhhhCc-eee-eCCCCCHHHHHHHHHH--CCEEEEecCCCC
Confidence 457999999998777777777765 99999987653211 12221 122 3567888999999987 677776555543
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC-CCCcE
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA-AGKGV 238 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~-gs~GV 238 (519)
.. ..+.++..|+|+ +++++++.+++||..+|++|+++|||+|+|..+.+.+++.++.+++|||+|+||..++ +|+|+
T Consensus 96 ~~-~l~~le~~gi~v-~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv 173 (577)
T PLN02948 96 VD-TLEALEKQGVDV-QPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLFGYPLMLKSRRLAYDGRGN 173 (577)
T ss_pred HH-HHHHHHhcCCcc-CCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCe
Confidence 33 347789999985 5999999999999999999999999999999999999998888999999999999877 69999
Q ss_pred EEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccc-cc-cccCCCCCCCCCCce
Q 010065 239 IVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQD-HK-RVGDGDTGPNTGGMG 314 (519)
Q Consensus 239 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~-~~-~~~~~~~~~~~g~~~ 314 (519)
+++++.+|+.++++.+.. ++..+|||+||++ +|++|.++++. +.+..++.... +. .++ ..
T Consensus 174 ~~v~~~~eL~~a~~~~~~------~~~~vlvEefI~~~~EisV~v~r~~~G~i~~~p~~E~~~~~~~~----------~~ 237 (577)
T PLN02948 174 AVAKTEEDLSSAVAALGG------FERGLYAEKWAPFVKELAVMVARSRDGSTRCYPVVETIHKDNIC----------HV 237 (577)
T ss_pred EEECCHHHHHHHHHHhhC------CCCcEEEEecCCCCeEEEEEEEECCCCCEEEecCcccEEECCee----------EE
Confidence 999999999999988753 4568999999998 99999999742 22333332221 11 111 12
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHH
Q 010065 315 AYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEV 394 (519)
Q Consensus 315 ~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~ 394 (519)
.+.|+. ++++..+++++.+ .++++++++. |++|+|||++++| ++||+|||||||++.++.. ..+++|+++.
T Consensus 238 ~~~Pa~-l~~~~~~~~~~~A----~~~~~aLg~~--Gv~~vEffv~~dG-~v~v~EInpRpg~sGh~t~-ea~~~s~fe~ 308 (577)
T PLN02948 238 VEAPAN-VPWKVAKLATDVA----EKAVGSLEGA--GVFGVELFLLKDG-QILLNEVAPRPHNSGHYTI-EACYTSQFEQ 308 (577)
T ss_pred EEECCC-CCHHHHHHHHHHH----HHHHHHhCCC--eEEEEEEEEcCCC-cEEEEEEeCCCCCCCceee-ecccCCHHHH
Confidence 357998 8999888888876 4688888865 9999999999887 7999999999998777444 4679999999
Q ss_pred HHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEE
Q 010065 395 LLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVT 474 (519)
Q Consensus 395 ~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi 474 (519)
++++++|.+........+.+.+.+++.... ... .....+.+++.+.. .+++++++++... ...+.|+|||+
T Consensus 309 ~vRa~lGlpl~~~~~~~~~A~m~nl~g~~~-~~~-g~~~~~~~~~~~~~-~p~~~v~~ygk~~------~r~~rkmGhV~ 379 (577)
T PLN02948 309 HLRAVLGLPLGDTSMKVPAAIMYNILGEDE-GEA-GFRLAHQLMGRALN-IPGASVHWYGKPE------MRKQRKMGHIT 379 (577)
T ss_pred HHHHHcCCCCCCccccCCcEEEEEEecccc-ccc-cccchhhHHHHHhh-CCCCEEEEecCCC------CCCCCeeEEEE
Confidence 999999984433222222244445555321 100 00011234444433 4566666665422 23458999999
Q ss_pred EecCCHHHHHHHHHHHhhccccCC
Q 010065 475 AKGKDVEEAQDRAYLAVEEINWPG 498 (519)
Q Consensus 475 ~~g~t~~ea~~~a~~~~~~i~~~g 498 (519)
+.|+|.+++.++++.+++.+++..
T Consensus 380 ~~g~~~~e~~~~~~~~~~~~~~~~ 403 (577)
T PLN02948 380 VVGPSAAEVEARLDQLLAEESADP 403 (577)
T ss_pred EecCCHHHHHHHHHHHHhhhccCC
Confidence 999999999999999999887653
No 26
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=4e-39 Score=340.62 Aligned_cols=404 Identities=20% Similarity=0.224 Sum_probs=284.7
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-C-CCCc-CCCCCccccCC------CCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-N-AGIS-NSGDATCIPDL------DVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~-~~~~-~~~~~~~v~~~------d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+||||+|.|..+..+++++++. |++++.++.. + .... ..++. .+ .+ +..|.+.+++++++.++|+|+|
T Consensus 3 kkiLi~~~ge~a~~~i~aa~~l-G~~~v~v~~~~d~~~~~~~~AD~-~~-~i~~~~~~~y~d~~~i~~~a~~~~iDaI~p 79 (478)
T PRK08463 3 HKILIANRGEIAVRVIRACRDL-HIKSVAIYTEPDRECLHVKIADE-AY-RIGTDPIKGYLDVKRIVEIAKACGADAIHP 79 (478)
T ss_pred cEEEEECCCHHHHHHHHHHHHc-CCeEEEEECCCccCCcchhhcCE-EE-EcCCCchhcccCHHHHHHHHHHhCCCEEEE
Confidence 6999999998777788887766 9998877643 2 1111 11211 11 12 2357889999999999999999
Q ss_pred CC----ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee-c--CCHHHHHHHHHHhCCCEE
Q 010065 154 GP----EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT-F--TDPNAAKQYIQEEGAPIV 226 (519)
Q Consensus 154 g~----E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~-v--~~~~~~~~~~~~~g~P~V 226 (519)
+. |.. .+++.++.+|++++|++++++..++||..+|++++++|||+|++.. + .+.+++.++++++|||+|
T Consensus 80 g~g~lsE~~---~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvv 156 (478)
T PRK08463 80 GYGFLSENY---EFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVI 156 (478)
T ss_pred CCCccccCH---HHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEE
Confidence 53 444 3567799999999999999999999999999999999999988543 2 477888888899999999
Q ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEecccccccccc
Q 010065 227 VKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVG 302 (519)
Q Consensus 227 vKP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~ 302 (519)
+||..|+||+|++++++.+|+.++++.+... ..+ .++.++||+||+| +|+++.++.|+ +.++.+.. +.. ...
T Consensus 157 vKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~--~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~e-r~~-s~~ 232 (478)
T PRK08463 157 LKASGGGGGRGIRVVHKEEDLENAFESCKREALAYF--NNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCE-RDC-SIQ 232 (478)
T ss_pred EEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEec-cCC-ccc
Confidence 9999999999999999999999998865321 112 3468999999997 88999988865 34443322 100 000
Q ss_pred CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHH
Q 010065 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQV 382 (519)
Q Consensus 303 ~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~ 382 (519)
.... ......|++.+++++.+++.+.+ .++++++|+. |+.++||++++++ ++||+|||||++++.. .
T Consensus 233 ~~~~-----~~ie~~P~~~l~~~~~~~i~~~a----~~~~~alg~~--g~~~vEf~~~~~~-~~y~iEiN~R~~~~~~-~ 299 (478)
T PRK08463 233 RRHQ-----KVIEIAPCPSISDNLRKTMGVTA----VAAAKAVGYT--NAGTIEFLLDDYN-RFYFMEMNTRIQVEHG-V 299 (478)
T ss_pred cccC-----ceEEECCCCCCCHHHHHHHHHHH----HHHHHHcCCC--CceeEEEEEcCCC-CEEEEEEECCcCCCcc-e
Confidence 0000 12345677668998888888776 4677888877 8999999999766 7999999999988643 4
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCCCCc--ccCCCcEEEEEEecCCCC--CC-CCCCcccccchhhhccCCCeEEEEeeeee
Q 010065 383 LMVRLESDLAEVLLAACRGELTGVTL--NWSPGSAMVVVMASKGYP--GS-YEKGSEIQNLEEAEQVAPSVKIFHAGTAL 457 (519)
Q Consensus 383 ~~~~~G~d~~~~~i~~~~g~~~~~~~--~~~~~~a~~~~l~~~~~~--~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 457 (519)
....+|+|+.++++++++|...+... ...+++++...+..+. | .. +..| .+..+... ..+++++- ...
T Consensus 300 te~~tGidlv~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-~~~~f~p~~G-~~~~~~~~--~~~~vr~d-~~~-- 372 (478)
T PRK08463 300 TEEITGIDLIVRQIRIAAGEILDLEQSDIKPRGFAIEARITAEN-VWKNFIPSPG-KITEYYPA--LGPSVRVD-SHI-- 372 (478)
T ss_pred eeHhhCCCHHHHHHHHHcCCCCCCccccCCCceEEEEEEEeccC-cccCeecCCc-EEEEEEcC--CCCCeeEe-ccc--
Confidence 44567999999999999998543211 1234677776655543 2 11 1111 22222110 11233322 111
Q ss_pred cCCCcEE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccccccc
Q 010065 458 DADGNFI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 458 ~~~g~~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~~~ 517 (519)
..|... ..+++++.++++|+|+++|.+++.++++.+.++|. +++.=+.++.|....+.|
T Consensus 373 -~~g~~v~~~~d~~la~~i~~g~~r~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t 438 (478)
T PRK08463 373 -YKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDGIRTTIPFLIAITKTREFRRGYFDT 438 (478)
T ss_pred -cCCCEeCcccccceeEEEEECCCHHHHHHHHHHHHhhcEEeCccCCHHHHHHHhCCHHHhCCCccc
Confidence 123222 24479999999999999999999999999999992 444444455555444443
No 27
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=100.00 E-value=2.8e-40 Score=333.32 Aligned_cols=296 Identities=22% Similarity=0.235 Sum_probs=229.4
Q ss_pred eEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCH
Q 010065 57 FSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDG 136 (519)
Q Consensus 57 ~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~ 136 (519)
||+|||||.|+||++|+.|+.. +..+|.+. |++++.++....+.+ +..+.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~------------------i~~al~~~-g~~v~~i~~~~~~~~-----------~~~~~ 50 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAA------------------VLKALRDL-GYDVYPVDIDKMGSW-----------TYKDL 50 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHH------------------HHHHHhhc-CCEEEEEeecCCccc-----------cccch
Confidence 7999999999999999999865 68888776 999988865432221 11121
Q ss_pred HH-HHHHH-HHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecC
Q 010065 137 DA-VISFC-RKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT 209 (519)
Q Consensus 137 ~~-l~~~~-~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~ 209 (519)
.. +.... ...++|+|++ .+|++.+ +..++.+|+|++|+++.++.+++||..++++|+++|||+|++..+.
T Consensus 51 ~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~---~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~ 127 (315)
T TIGR01205 51 PQLILELGALLEGIDVVFPVLHGRYGEDGTI---QGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLT 127 (315)
T ss_pred HHHHhhccccCCCCCEEEEecCCCCCCCcHH---HHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEe
Confidence 22 21111 1257999999 2566654 4559999999999999999999999999999999999999999887
Q ss_pred -CHHHH-----HHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEE
Q 010065 210 -DPNAA-----KQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFAL 283 (519)
Q Consensus 210 -~~~~~-----~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l 283 (519)
+.++. ..+.+.++||+|+||..+++|.||.+++|.+|+.++++.++. .+..+|||+||+|+|+++.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~i~G~e~~v~vi 201 (315)
T TIGR01205 128 QNRASADELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFE------YDEEVLVEQFIKGRELEVSIL 201 (315)
T ss_pred cccccchhhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHh------cCCcEEEEcCCCCEEEEEEEE
Confidence 54322 233467899999999999999999999999999999988763 457899999999999999999
Q ss_pred EeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCC
Q 010065 284 VDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKS 363 (519)
Q Consensus 284 ~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g 363 (519)
.+++....+........++++..++..+++...+|+. ++++..+++++.+ .++++++|+. |++++||+++++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a----~~~~~~lg~~--G~~~vD~~~~~~g 274 (315)
T TIGR01205 202 GNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAP-LDEELEEKIKELA----LKAYKALGCR--GLARVDFFLDEEG 274 (315)
T ss_pred CCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCC--ceEEEEEEEeCCC
Confidence 7554211111111111256667777777777778887 8988888888876 4688999987 9999999999876
Q ss_pred CceEEEEEeCCCCCCchHHHHH----HhCCCHHHHHHHHHh
Q 010065 364 GLPKLIEYNVRFGDPECQVLMV----RLESDLAEVLLAACR 400 (519)
Q Consensus 364 ~~~~viEiN~R~G~~~~~~~~~----~~G~d~~~~~i~~~~ 400 (519)
++||+|||||||++.. ++++ ..|.++.+++..++.
T Consensus 275 -~~~viEvN~~pg~~~~-s~~~~~~~~~G~~~~~l~~~ii~ 313 (315)
T TIGR01205 275 -EIYLNEINTIPGMTAI-SLFPKAAAAAGIEFSQLVERILE 313 (315)
T ss_pred -CEEEEEeeCCCCCCCc-cHHHHHHHHcCCCHHHHHHHHHh
Confidence 7999999999998775 4443 239999999988764
No 28
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=1.5e-40 Score=373.08 Aligned_cols=311 Identities=19% Similarity=0.194 Sum_probs=238.3
Q ss_pred cceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC-CccccCCC
Q 010065 54 SSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD-ATCIPDLD 132 (519)
Q Consensus 54 ~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~-~~~v~~~d 132 (519)
.++||+|||||.|+||+||+.||.+ +..+|.+. ||+++.++.+..+.+.... .......+
T Consensus 450 ~~~~i~vl~GG~S~E~~vSl~s~~~------------------v~~al~~~-~~~v~~~~i~~~g~~~~~~~~~~~~~~~ 510 (809)
T PRK14573 450 KKLSLGLVCGGKSCEHDISLLSAKN------------------IAKYLSPE-FYDVSYFLINRQGLWETVSSLETAIEED 510 (809)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHH------------------HHHhhccc-CcEEEEEEECCCCeEEeccccccccccc
Confidence 4789999999999999999999876 57777665 8888877655433221110 00000000
Q ss_pred C--CCH-HHHHHHHHHcCCcEEEE---C--CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 010065 133 V--LDG-DAVISFCRKWSVGLVVV---G--PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204 (519)
Q Consensus 133 ~--~d~-~~l~~~~~~~~id~Vi~---g--~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~ 204 (519)
. ... ..+. -...++|+||+ | +||+.+|++ ||.+|+||+|+++.++++++||..+|++++++|||+|+
T Consensus 511 ~~~~~~~~~~~--~~~~~~d~vf~~lhG~~gedg~iq~~---le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~ 585 (809)
T PRK14573 511 SGKSVLSSEIA--QALAKVDVVLPILHGPFGEDGTMQGF---LEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVP 585 (809)
T ss_pred ccccccchhhh--hccccCCEEEEcCCCCCCCChHHHHH---HHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCC
Confidence 0 000 0110 01146899999 3 899988777 99999999999999999999999999999999999999
Q ss_pred eeecCC------HH-HHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-c
Q 010065 205 YKTFTD------PN-AAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-E 276 (519)
Q Consensus 205 ~~~v~~------~~-~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~ 276 (519)
|..++. .+ .+.++.++++||+||||++++||.||.+|++.+|+.+++++++. .+.++|||||+.| +
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~------~~~~vlVEe~i~~gr 659 (809)
T PRK14573 586 YQPLTLAGWKREPELCLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFL------YDTDVFVEESRLGSR 659 (809)
T ss_pred EEEEechhcccChHHHHHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHh------cCCcEEEEeccCCCE
Confidence 988863 22 23456678999999999999999999999999999999999874 4578999999876 9
Q ss_pred EEEEEEEEeCCeeEEe---ccccccccccCCCCCCCC-CC--ceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCee
Q 010065 277 EASFFALVDGENAIPL---ESAQDHKRVGDGDTGPNT-GG--MGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFV 350 (519)
Q Consensus 277 E~sv~~l~dg~~~~~~---~~~~~~~~~~~~~~~~~~-g~--~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~ 350 (519)
|++|.++.++...+.+ ........+|+|+.||.. +. ....+|++ +++++.+++++.+ .++++++|+.
T Consensus 660 Ei~v~vl~~~~~~~~~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a----~~~~~aLg~~-- 732 (809)
T PRK14573 660 EIEVSCLGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD-LSKESQEQVLELA----ERIYRLLQGK-- 732 (809)
T ss_pred EEEEEEEeCCCCceEeccceEEccCCCeeCchhcccCCCCCceEEecCCC-CCHHHHHHHHHHH----HHHHHHhCCc--
Confidence 9999999865432211 112222368899999953 32 23346888 9999999999887 4788999988
Q ss_pred eEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHh----CCCHHHHHHHHHhCCC
Q 010065 351 GVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRL----ESDLAEVLLAACRGEL 403 (519)
Q Consensus 351 G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~----G~d~~~~~i~~~~g~~ 403 (519)
|+++|||+++++| ++||+|||||||+|.. +++|.+ |+++.+++.+++...+
T Consensus 733 G~~riDf~v~~~g-~~yv~EiNt~PG~t~~-s~~p~~~~~~G~~~~~li~~ii~~a~ 787 (809)
T PRK14573 733 GSCRIDFFLDEEG-NFWLSEMNPIPGMTEA-SPFLTAFVRKGWTYEQIVHQLIIDGL 787 (809)
T ss_pred eEEEEEEEEcCCC-CEEEEEeeCCCCCCcc-cHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999876 8999999999999987 666643 9999998888765543
No 29
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=4.7e-39 Score=339.86 Aligned_cols=388 Identities=22% Similarity=0.250 Sum_probs=277.0
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CCC-C-cCCCCCcc-cc----CCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NAG-I-SNSGDATC-IP----DLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~~-~-~~~~~~~~-v~----~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
+||||+|.|.....+++++++. |++++.+..+ +.. . ...++... +. .-+..|.+.+++++++.++|+|+||
T Consensus 3 ~kvLIan~Geia~~iiraar~l-Gi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg 81 (499)
T PRK08654 3 KKILIANRGEIAIRVMRACREL-GIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPG 81 (499)
T ss_pred ceEEEECCcHHHHHHHHHHHHc-CCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEEC
Confidence 6899999998777778888776 9998887543 211 1 11122111 10 1234578999999999999999996
Q ss_pred ----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee--cCCHHHHHHHHHHhCCCEEEE
Q 010065 155 ----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT--FTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 155 ----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~--v~~~~~~~~~~~~~g~P~VvK 228 (519)
+|.. .+++.++..|++++|++++++.++.||..+|++++++|||+|++.. +.+.+++.++++++|||+|+|
T Consensus 82 ~gflsE~~---~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIK 158 (499)
T PRK08654 82 YGFLAENP---EFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIK 158 (499)
T ss_pred CCccccCH---HHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEE
Confidence 3554 4567799999999999999999999999999999999999988764 688999999999999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDG 304 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~ 304 (519)
|+.|+||+|++++++.+||.++++.+... ..|+ ++.++||+||+| +|+++.++.|+ ++++.+...... +...
T Consensus 159 p~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~--~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recs--iqrr 234 (499)
T PRK08654 159 ASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFG--DSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECS--IQRR 234 (499)
T ss_pred eCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCC--CCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccc--cccC
Confidence 99999999999999999999999876532 1232 468999999997 89999999875 344444321100 0000
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH
Q 010065 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384 (519)
Q Consensus 305 ~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~ 384 (519)
.. ......|++.+++++.+++.+.+. ++++++|+. |..+|||+++++ ++||+|||||++.... ...
T Consensus 235 ~q-----k~ie~~Pa~~l~~~~~~~l~~~A~----~l~~algy~--g~gtVEfl~~~g--~~yflEiNpRlqveh~-vte 300 (499)
T PRK08654 235 HQ-----KLIEEAPSPIMTPELRERMGEAAV----KAAKAINYE--NAGTVEFLYSNG--NFYFLEMNTRLQVEHP-ITE 300 (499)
T ss_pred cc-----ceEEECCCCCCCHHHHHHHHHHHH----HHHHHcCCC--CceEEEEEEECC--cEEEEEEECCCCCCCc-eee
Confidence 00 112345776689888888888764 677888876 999999999754 5999999999976543 333
Q ss_pred HHhCCCHHHHHHHHHhCCCCCCCc--ccCCCcEEEEEEecCCCC-CCCCCCcccccchhhhccCCCeEEEEeeeeecCCC
Q 010065 385 VRLESDLAEVLLAACRGELTGVTL--NWSPGSAMVVVMASKGYP-GSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADG 461 (519)
Q Consensus 385 ~~~G~d~~~~~i~~~~g~~~~~~~--~~~~~~a~~~~l~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (519)
..+|+|+.+++++++.|...+... ....++++.+.+...+.. +.....-.|..+... ..+++++-. +. ..|
T Consensus 301 ~~tGvDlv~~~i~~A~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p--~~~~vr~d~-~~---~~g 374 (499)
T PRK08654 301 MVTGIDIVKEQIKIAAGEELSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSP--GGPGVRVDS-GV---HMG 374 (499)
T ss_pred hhhCCCHHHHHHHHhcCCCCCCcccccccceEEEEEEEEeecCccCcCCCCCeEEEEEcC--CCCCEEEEC-cc---cCC
Confidence 457999999999999998443221 123467877666554310 111111123332211 012333221 11 112
Q ss_pred cEE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCC
Q 010065 462 NFI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG 498 (519)
Q Consensus 462 ~~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g 498 (519)
... ...+++++|+++|+|+++|++++.++++...+.|
T Consensus 375 ~~v~~~~ds~~ak~i~~g~~r~~a~~~~~~al~~~~i~g 413 (499)
T PRK08654 375 YEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVG 413 (499)
T ss_pred CCcCCccCchhheeeEeCCCHHHHHHHHHHHHhhcEEEC
Confidence 211 2446899999999999999999999999999999
No 30
>PRK07206 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=334.03 Aligned_cols=396 Identities=17% Similarity=0.137 Sum_probs=272.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCC---cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCCh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGI---SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEA 157 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~---~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~ 157 (519)
++++++++++.....+++++++. |++++.++.+. ... ...........++..+.+.++++++++++|+|+++.|.
T Consensus 2 ~k~~liv~~~~~~~~~~~a~~~~-G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~~~e~ 80 (416)
T PRK07206 2 MKKVVIVDPFSSGKFLAPAFKKR-GIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIAGAES 80 (416)
T ss_pred CCeEEEEcCCchHHHHHHHHHHc-CCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCCEEEECCCc
Confidence 46899999886666788888876 99999887442 111 11111111112344678899999999999999999887
Q ss_pred hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC---CEEEEeCCCCC
Q 010065 158 PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA---PIVVKADGLAA 234 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~---P~VvKP~~g~g 234 (519)
.+. ..+...+.+|+|+ +++++++..++||..|+++|+++|||+|++..+.+.+++.+++++++| |+||||.+++|
T Consensus 81 ~~~-~~a~l~~~l~l~~-~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~e~~~~~~~~g~~~~P~VvKP~~g~g 158 (416)
T PRK07206 81 GVE-LADRLAEILTPQY-SNDPALSSARRNKAEMINALAEAGLPAARQINTADWEEAEAWLRENGLIDRPVVIKPLESAG 158 (416)
T ss_pred cHH-HHHHHHHhcCCCc-CCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHHHHHHHHHhcCCCCCCEEEeCCCCCC
Confidence 653 2344556788875 689999999999999999999999999999999999999999999888 99999999999
Q ss_pred CCcEEEeCCHHHHHHHHHHHHhh-ccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCc
Q 010065 235 GKGVIVAMTLEEAYEAVDSMLLK-NAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGM 313 (519)
Q Consensus 235 s~GV~~v~~~~el~~a~~~~~~~-~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~ 313 (519)
|.||++|+|.+|+.++++++... +.++..+..+||||||+|+||+++++..++.+........+..... .+......
T Consensus 159 s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~E~sv~~~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~ 236 (416)
T PRK07206 159 SDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIGTEYVVNFVSLDGNHLVTEIVRYHKTSLN--SGSTVYDY 236 (416)
T ss_pred CCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccccEEEEEEEEEECCEEEEEEeEEeeecccC--CCCceecc
Confidence 99999999999999999987642 1122234689999999999999999974433333222221111111 01111111
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH-HHhCCCHH
Q 010065 314 GAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM-VRLESDLA 392 (519)
Q Consensus 314 ~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~-~~~G~d~~ 392 (519)
....| .+....+++.+.+ .+++.++|+++ |++|+||+++++| +++||||+|+||+..+.+. ..+|+|+.
T Consensus 237 ~~~~p---~~~~~~~~i~~~~----~~~~~alg~~~-G~~h~E~~~~~~g--~~liEin~R~~G~~~~~~~~~~~G~d~~ 306 (416)
T PRK07206 237 DEFLD---YSEPEYQELVDYT----KQALDALGIKN-GPAHAEVMLTADG--PRLIEIGARLDGGLHPDVARLATGDSQL 306 (416)
T ss_pred cccCC---ccHHHHHHHHHHH----HHHHHHcCCcc-CCceEEEEEcCCC--CEEEEECCccCCCCccchhhhhcCcCHH
Confidence 12233 2344555555544 57889999964 9999999999988 9999999999887664444 44699999
Q ss_pred HHHHHHHhCCCCCCC---c--ccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecC
Q 010065 393 EVLLAACRGELTGVT---L--NWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATG 467 (519)
Q Consensus 393 ~~~i~~~~g~~~~~~---~--~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 467 (519)
+++++.++|...... . ...+..++.+ +.++. .+. ...+.+++++.+.+....+...-...+......++.
T Consensus 307 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~G~---~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~~~d~~ 381 (416)
T PRK07206 307 DATVESLADPDVFRETLREGYRLKAHVFNVF-LISPA-AGV---FSNVEFLEEIQKLPSFKKSHIYVKEGDYVPQTVDLF 381 (416)
T ss_pred HHHHHHHhCchhhccccCCCcChhhceEEEE-EecCC-Cce---EeCCccHHHHHhCCchhheEEecCCCCCccCceecC
Confidence 999999999732111 1 1112233333 33221 232 245777787765433222111111111234556778
Q ss_pred CeEEEEEEecCCHHHHHHHHHHHhhccccCC
Q 010065 468 GRVLGVTAKGKDVEEAQDRAYLAVEEINWPG 498 (519)
Q Consensus 468 ~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g 498 (519)
+|+|+|++.|+|.+++.+..+++.+ ++-+|
T Consensus 382 ~~~g~v~~~~~~~~~~~~~~~~~~~-~~~~~ 411 (416)
T PRK07206 382 SQPGTVYLVHKDKEQLWQDYEKIRK-MESKG 411 (416)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHH-HhhcC
Confidence 9999999999999999888777643 44333
No 31
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=9.6e-38 Score=320.80 Aligned_cols=361 Identities=20% Similarity=0.191 Sum_probs=267.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-ISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
+++|+|||+|.....++.++++. |+++++++++... ....++ ..+ ..+..|.+.+.++++ .+|+|.+..|+...
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l-G~~v~~~d~~~~~pa~~~ad-~~~-~~~~~D~~~l~~~a~--~~dvit~e~e~i~~ 76 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL-GYKVIVLDPDPDSPAAQVAD-EVI-VADYDDVAALRELAE--QCDVITYEFENVPA 76 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCCCCchhHhCc-eEE-ecCCCCHHHHHHHHh--cCCEEEeCcCCCCH
Confidence 46899999997666666666655 9999999876322 222222 222 457788999999887 57877776666544
Q ss_pred HHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCC-CCCCcEE
Q 010065 161 SGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGL-AAGKGVI 239 (519)
Q Consensus 161 ~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g-~gs~GV~ 239 (519)
.. .+.+++.+ + ++++++++.+++||..+|++|+++|||+|+|..+.+.+++.++.+++|||+|+||..+ .+|+|++
T Consensus 77 ~~-l~~l~~~~-~-~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~ 153 (372)
T PRK06019 77 EA-LDALAARV-P-VPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADLGLPAVLKTRRGGYDGKGQW 153 (372)
T ss_pred HH-HHHHhcCC-e-eCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeE
Confidence 33 33455543 3 4699999999999999999999999999999999999999988899999999999986 5899999
Q ss_pred EeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccccCCCCCCCCCCceEEe
Q 010065 240 VAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRVGDGDTGPNTGGMGAYS 317 (519)
Q Consensus 240 ~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (519)
++++.+|+.++++.+ .+..+|||+||++ +|+++.++++. +.+..++........ +. ...++.
T Consensus 154 ~v~~~~el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p~~e~~~~~-----gi---~~~~~~ 217 (372)
T PRK06019 154 VIRSAEDLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRDGEVVFYPLVENVHRN-----GI---LRTSIA 217 (372)
T ss_pred EECCHHHHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCCCCEEEeCCcccEEeC-----CE---EEEEEC
Confidence 999999999998876 2468999999995 99999988742 234434433221110 00 012467
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHH
Q 010065 318 PAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLA 397 (519)
Q Consensus 318 P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~ 397 (519)
|+. +++++.+++++.+ .+++.++++. |++++|||++++| ++||+||||||+++.+++ ...+++|.++.+++
T Consensus 218 pa~-~~~~~~~~~~~~a----~~i~~~L~~~--G~~~vEff~~~dg-~~~v~EinpR~~~sg~~t-~~~~~~sqf~~~ir 288 (372)
T PRK06019 218 PAR-ISAELQAQAEEIA----SRIAEELDYV--GVLAVEFFVTGDG-ELLVNEIAPRPHNSGHWT-IEACSTSQFEQHLR 288 (372)
T ss_pred CCC-CCHHHHHHHHHHH----HHHHHHcCcc--ceeEEEEEEcCCC-eEEEEEecCCccCcccEE-hhhcCccHHHHHHH
Confidence 887 8888888887766 4677888865 9999999999876 899999999999888855 34679999999999
Q ss_pred HHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEec
Q 010065 398 ACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKG 477 (519)
Q Consensus 398 ~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g 477 (519)
+++|.+.. .+.....+++.+++.... ...+++.+.+ .++++++++|... ...+.++|||.+.|
T Consensus 289 a~~Glpl~-~~~~~~~~~m~nilg~~~---------~~~~~~~~~~-~~~~~~~~ygk~~------~~~~rk~Ghv~~~~ 351 (372)
T PRK06019 289 AILGLPLG-TTRLLSPAVMVNLLGDDW---------LEPRWDALLA-LPGAHLHLYGKAE------ARPGRKMGHVTVLG 351 (372)
T ss_pred HHcCCCCC-CccccCceEEEEEECchh---------hhhHHHHHhh-CCCCEEEECCCCC------CCCCCceEEEEeec
Confidence 99998544 233233356667766431 0122333322 3677777776532 13456799999999
Q ss_pred CCHHHHHHHHHHHhh
Q 010065 478 KDVEEAQDRAYLAVE 492 (519)
Q Consensus 478 ~t~~ea~~~a~~~~~ 492 (519)
+|.+++.++++.+..
T Consensus 352 ~~~~~~~~~~~~~~~ 366 (372)
T PRK06019 352 DDVEALLAKLEALAP 366 (372)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999876
No 32
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.1e-37 Score=351.90 Aligned_cols=385 Identities=17% Similarity=0.197 Sum_probs=280.9
Q ss_pred ccEEEEEeCCh--hHHHHHHHHHhcCCCcEEEEecCCCCCcCCC-CCccccCCCCCCHHHHHHHHHHc-CCcEEEECCCh
Q 010065 82 RVVVLVIGGGG--REHALCYALKRSHSCDAVFCAPGNAGISNSG-DATCIPDLDVLDGDAVISFCRKW-SVGLVVVGPEA 157 (519)
Q Consensus 82 ~~~vliiG~g~--~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~-~~~~v~~~d~~d~~~l~~~~~~~-~id~Vi~g~E~ 157 (519)
.+++++|+++. ....++.++++. |++++++.++........ ..+.+...|+.|.+.+++++++. .+++|+++.|.
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~l-G~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~~~i~~V~~~se~ 80 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLR-GFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAGIMSSSEY 80 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHc-CCEEEEEeCCchhhchhhhcceeEEEcCCCCHHHHHHHHHhcCCCCEEEeCchh
Confidence 36788888763 223456666655 999998875432111111 11111156889999999999887 68999998776
Q ss_pred hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCc
Q 010065 158 PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKG 237 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~G 237 (519)
.. ...++..+.+|+| |++++++.+++||..|+++|+++|||+|++..+++.+++.++.++++||+||||.+++||.|
T Consensus 81 ~v-~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~e~~~~~~~~~~PvVVKP~~g~gS~G 157 (887)
T PRK02186 81 FI-EVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGLTYPVVVKPRMGSGSVG 157 (887)
T ss_pred hH-HHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCC
Confidence 54 3456778899999 89999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEe
Q 010065 238 VIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYS 317 (519)
Q Consensus 238 V~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (519)
|++|+|.+|+.++++.+... ....+||||||+|+||+++++.+++....+.....+. ...+++.+.++..
T Consensus 158 V~~v~~~~el~~a~~~~~~~-----~~~~~lvEEfI~G~E~sVe~i~~~g~~~i~~i~~k~~-----~~~~~~ve~g~~~ 227 (887)
T PRK02186 158 VRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEGDEYSVETLTVARGHQVLGITRKHL-----GPPPHFVEIGHDF 227 (887)
T ss_pred eEEECCHHHHHHHHHHHHhc-----CCCcEEEeecccCCcEEEEEEEECCcEEEEEEEeeec-----CCCCCeEEecccc
Confidence 99999999999999887542 3578999999999999999998544333333332211 1123344556678
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH-HhCCCHHHHHH
Q 010065 318 PAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV-RLESDLAEVLL 396 (519)
Q Consensus 318 P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~-~~G~d~~~~~i 396 (519)
|++ ++++..+++.+.+ .+++.++|+++ |++|+||++++++ +||||||||+||+.++.+.. .+|+|+.++++
T Consensus 228 P~~-l~~~~~~~l~~~~----~~~l~aLG~~~-G~~hvE~~~t~~g--~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i 299 (887)
T PRK02186 228 PAP-LSAPQRERIVRTV----LRALDAVGYAF-GPAHTELRVRGDT--VVIIEINPRLAGGMIPVLLEEAFGVDLLDHVI 299 (887)
T ss_pred CCC-CCHHHHHHHHHHH----HHHHHHcCCCc-CceEEEEEEECCC--EEEEEECCCCCCccHHHHHHHHHCcCHHHHHH
Confidence 988 8888877777765 57889999974 9999999999877 99999999998876544444 46999999999
Q ss_pred HHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcE----EecCCeEEE
Q 010065 397 AACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNF----IATGGRVLG 472 (519)
Q Consensus 397 ~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~rvg~ 472 (519)
++++|......+......++.+++... ++.. ..+.+.++.....+.+. ++.-. +.|.. .+..+|+|+
T Consensus 300 ~~~lG~~~~~~~~~~~~~ai~~~~~~~--~G~i---~~i~~~~~~~~~~~~~~-~~~~~---~~G~~v~~~~~~~~~~g~ 370 (887)
T PRK02186 300 DLHLGVAAFADPTAKRYGAIRFVLPAR--SGVL---RGLLFLPDDIAARPELR-FHPLK---QPGDALRLEGDFRDRIAA 370 (887)
T ss_pred HHhCCCCCCCCCCCCCeEEEEEEecCC--CceE---EecccchhhcccCCeEE-EEEec---CCCCEecCCCCCCCccEE
Confidence 999998655444433334444443321 2222 22333222111122333 21111 23332 345689999
Q ss_pred EEEecCCHHHHHHHHHHHhhccccC
Q 010065 473 VTAKGKDVEEAQDRAYLAVEEINWP 497 (519)
Q Consensus 473 vi~~g~t~~ea~~~a~~~~~~i~~~ 497 (519)
|++.|+|.+++.+.++++.+.+++.
T Consensus 371 vi~~g~~~~e~~~~~~~~~~~l~~~ 395 (887)
T PRK02186 371 VVCAGDHRDSVAAAAERAVAGLSID 395 (887)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCEEE
Confidence 9999999999999999999998874
No 33
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=100.00 E-value=1.2e-38 Score=319.74 Aligned_cols=286 Identities=23% Similarity=0.260 Sum_probs=232.4
Q ss_pred ceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCC
Q 010065 55 SFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVL 134 (519)
Q Consensus 55 ~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~ 134 (519)
+++|+|++||.|+||++|+.|+.. +..+|++. |+++..++.++
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~------------------i~~al~~~-g~~v~~i~~~~------------------ 46 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAA------------------VLAALREA-GYDAHPIDPGE------------------ 46 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHH------------------HHHHHHHC-CCEEEEEecCc------------------
Confidence 569999999999999999999765 68888776 99988774321
Q ss_pred CHHHHHHHHHHcCCcEEEEC-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecC
Q 010065 135 DGDAVISFCRKWSVGLVVVG-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFT 209 (519)
Q Consensus 135 d~~~l~~~~~~~~id~Vi~g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~ 209 (519)
.+.+.++..++|+||+. ++++.+++ .++.+|+|++|++..++.++.||..++++|+++|||+|++..+.
T Consensus 47 ---~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~---~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~ 120 (304)
T PRK01372 47 ---DIAAQLKELGFDRVFNALHGRGGEDGTIQG---LLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLT 120 (304)
T ss_pred ---chHHHhccCCCCEEEEecCCCCCCccHHHH---HHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEe
Confidence 12333445689999982 56665544 48999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCee
Q 010065 210 DPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENA 289 (519)
Q Consensus 210 ~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~ 289 (519)
+.+++..++++++||+|+||..+++|.||.++++.+|+.++++.+.. .+..+|||+||+|+|+++.++.+ + .
T Consensus 121 ~~~~~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~------~~~~~lvEe~i~G~E~~v~vi~~-~-~ 192 (304)
T PRK01372 121 REEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK------YDDEVLVEKYIKGRELTVAVLGG-K-A 192 (304)
T ss_pred CcchHHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh------cCCcEEEEcccCCEEEEEEEECC-C-c
Confidence 99888888889999999999999999999999999999999887753 35789999999999999988743 3 2
Q ss_pred EEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEE
Q 010065 290 IPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLI 369 (519)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~vi 369 (519)
.++.........+++..+++.|+.....|+. ++++..+++.+.+ .++++++|+. |++++||+++++| ++||+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~~~~~~~~l~~~a----~~~~~~lg~~--g~~~iD~~~~~~g-~~~vi 264 (304)
T PRK01372 193 LPVIEIVPAGEFYDYEAKYLAGGTQYICPAG-LPAEIEAELQELA----LKAYRALGCR--GWGRVDFMLDEDG-KPYLL 264 (304)
T ss_pred cceEEEEecCCEEeeeccccCCCeEEEeCCC-CCHHHHHHHHHHH----HHHHHHhCCc--ceEEEEEEEcCCC-CEEEE
Confidence 2222222223456677778888877888876 8888888888765 4688888976 9999999999876 89999
Q ss_pred EEeCCCCCCchHHHHH----HhCCCHHHHHHHHHh
Q 010065 370 EYNVRFGDPECQVLMV----RLESDLAEVLLAACR 400 (519)
Q Consensus 370 EiN~R~G~~~~~~~~~----~~G~d~~~~~i~~~~ 400 (519)
|+|+|||++.. +.++ ..|+++.+++..++.
T Consensus 265 EvN~~p~~~~~-~~~~~~~~~~g~~~~~~~~~ii~ 298 (304)
T PRK01372 265 EVNTQPGMTSH-SLVPMAARAAGISFSELVDRILE 298 (304)
T ss_pred EecCCCCCCcc-cHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999988654 3333 339999998887764
No 34
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=8.2e-38 Score=355.82 Aligned_cols=375 Identities=18% Similarity=0.201 Sum_probs=274.0
Q ss_pred ccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 82 RVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 82 ~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
.+||||+|+|.. ..+++++|++. |++++.++++...... ...++.+ ++.+.+.+.+.++++++++|
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~-G~~Vi~vd~np~t~~~~~~~aD~~-yi~p~~~e~v~~ii~~e~~D 100 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVVLINSNPATIMTDPETADRT-YIAPMTPELVEQVIAKERPD 100 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHc-CCEEEEEeCCcccccCChhhCcEE-EeCCCCHHHHHHHHHHhCCC
Confidence 357777777742 23578898877 9999998755321111 1112333 56777888999999999999
Q ss_pred EEEE--CCChhhHHHH----HHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC-
Q 010065 150 LVVV--GPEAPLVSGL----ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG- 222 (519)
Q Consensus 150 ~Vi~--g~E~~~~~~~----a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g- 222 (519)
+|+| +++.++.... ...|+.+|+|++|++++++.+++||..+|++|+++|+|+|++..+.+.+++.++++++|
T Consensus 101 ~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~eea~~~~~~iG~ 180 (1102)
T PLN02735 101 ALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTLDECFEIAEDIGE 180 (1102)
T ss_pred EEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCHHHHHHHHHHhCC
Confidence 9999 6777653221 24688999999999999999999999999999999999999999999999988889998
Q ss_pred CCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEecccccccc
Q 010065 223 APIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKR 300 (519)
Q Consensus 223 ~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~ 300 (519)
||+||||+++.||.|+.+|+|.+||.++++.++.. +.++++||||||.| +|+++++++|. +++..++....
T Consensus 181 yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~----s~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v~~ie~--- 253 (1102)
T PLN02735 181 FPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAA----SITSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIEN--- 253 (1102)
T ss_pred CCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhc----CCCCeEEEEEecCCCeEEEEEEEEcCCCCEEEEeeEEE---
Confidence 99999999999999999999999999999887532 35678999999999 89999999863 33433333222
Q ss_pred ccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCch
Q 010065 301 VGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPEC 380 (519)
Q Consensus 301 ~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~ 380 (519)
++ ..++++|.+..+.|+..++++..+++++.+ .++++++|+. +|.+|+||+++++++++||||||||++++..
T Consensus 254 -~d-p~gvh~G~s~~vaPa~tL~~~~~q~l~~~A----~ki~~aLgi~-~G~~nVqf~l~~~~g~~~ViEVNPR~s~ss~ 326 (1102)
T PLN02735 254 -ID-PMGVHTGDSITVAPAQTLTDKEYQRLRDYS----VAIIREIGVE-CGGSNVQFAVNPVDGEVMIIEMNPRVSRSSA 326 (1102)
T ss_pred -Ec-CCccccCCEEEEEeCCCCCHHHHHHHHHHH----HHHHHHhCCC-cCceEEEEEEECCCCcEEEEEecCCCCCcch
Confidence 22 235677887778899769999988888877 4688999985 3999999999963338999999999987543
Q ss_pred HHHHHHhCCCHHHHHHHHHhCCCCC-CCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecC
Q 010065 381 QVLMVRLESDLAEVLLAACRGELTG-VTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDA 459 (519)
Q Consensus 381 ~~~~~~~G~d~~~~~i~~~~g~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 459 (519)
.....+|+|+.+..+++++|...+ .......... ..+-...+| .+..+ | .+....-...
T Consensus 327 -l~s~atG~~~a~~~~klalG~~l~~~~~~~~~~~~-a~~ep~~d~--------~~~k~-------p---~~~f~~f~~~ 386 (1102)
T PLN02735 327 -LASKATGFPIAKMAAKLSVGYTLDQIPNDITLKTP-ASFEPSIDY--------VVTKI-------P---RFAFEKFPGS 386 (1102)
T ss_pred -hhhhhhCCCHHHHHHHHHCCCChhhhccccccccc-hheeecCCc--------EEEEc-------c---cCCcccccCC
Confidence 333457999999999999998322 2111111110 111000000 00000 0 1111111112
Q ss_pred CCcEEecCCeEEEEEEecCCHHHHHHHHHHHhh
Q 010065 460 DGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVE 492 (519)
Q Consensus 460 ~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~ 492 (519)
...+.+....+|.|++.|.|.+||.++|.+.++
T Consensus 387 ~~~l~~~mks~ge~m~~gr~~~ea~~ka~~~~~ 419 (1102)
T PLN02735 387 QPILTTQMKSVGEAMALGRTFQESFQKALRSLE 419 (1102)
T ss_pred CcccceeeeecceEEEecCCHHHHHHHHHHHhc
Confidence 334566778899999999999999999998875
No 35
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=9.5e-37 Score=348.52 Aligned_cols=407 Identities=19% Similarity=0.237 Sum_probs=290.3
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcCCCCCcc-c--c----CCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-ISNSGDATC-I--P----DLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~~~~~~-v--~----~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
+||||+|.|.....+++++++. |++++.++.+... ......++. + . .-+..|.+.++++|+++++|+|+|+
T Consensus 2 ~kvLI~g~Geia~~iiraak~l-Gi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG 80 (1201)
T TIGR02712 2 DTVLIANRGEIAVRIIRTLRRM-GIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPG 80 (1201)
T ss_pred cEEEEECCCHHHHHHHHHHHHc-CCeEEEEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeC
Confidence 6899999998777888888876 9998888654211 111111111 1 0 1245578999999999999999996
Q ss_pred ----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCC-eeecCCHHHHHHHHHHhCCCEEEEe
Q 010065 155 ----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK-YKTFTDPNAAKQYIQEEGAPIVVKA 229 (519)
Q Consensus 155 ----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~-~~~v~~~~~~~~~~~~~g~P~VvKP 229 (519)
.|.. .+++.++..|++++|++++++.++.||..+|++++++|||+|+ +..+.+.+++.+++++++||+||||
T Consensus 81 ~gflsE~~---~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~dea~~~a~~igyPvVVKP 157 (1201)
T TIGR02712 81 YGFLSENA---AFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSLDEALEAAKEIGYPVMLKS 157 (1201)
T ss_pred CcccccCH---HHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCHHHHHHHHHhcCCeEEEEE
Confidence 3444 4567799999999999999999999999999999999999866 6677899999988999999999999
Q ss_pred CCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccCCC
Q 010065 230 DGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 230 ~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~ 305 (519)
..++||+|+++|++.+|+.++++.+... ..+ .+..++|||||+| +|+++.+++|+. .+..+...... +....
T Consensus 158 ~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f--~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s--~qr~~ 233 (1201)
T TIGR02712 158 TAGGGGIGMQKCDSAAELAEAFETVKRLGESFF--GDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCS--LQRRN 233 (1201)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhc--CCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEee--eEecC
Confidence 9999999999999999999998877531 112 2356999999995 999999999764 34444321100 00000
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH
Q 010065 306 TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV 385 (519)
Q Consensus 306 ~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~ 385 (519)
. ......|++.++++..+++.+.+ .+++.++++. |+.++||+++++++++||+|||||+++... ....
T Consensus 234 ~-----k~vee~Pap~l~~~~~~~l~~~a----~~l~~aLgy~--G~~~VEfild~~~g~~y~lEVNpRlq~~~~-lte~ 301 (1201)
T TIGR02712 234 Q-----KVVEETPAPNLPPETRQALLAAA----ERLGEAVNYR--SAGTVEFIYDEARDEFYFLEVNTRLQVEHP-VTEM 301 (1201)
T ss_pred c-----cEEEEcCCCCCCHHHHHHHHHHH----HHHHHhcCcc--ceEEEEEEEECCCCCEEEEEEECCcCcchh-hHHH
Confidence 0 11234577668888888888776 4566777866 999999999975336999999999977543 3444
Q ss_pred HhCCCHHHHHHHHHhCCCCCCC-cc---cCCCcEEEEEEecCCCCCCC--CCCcccccchhhhccCCCeEEEEeeeeecC
Q 010065 386 RLESDLAEVLLAACRGELTGVT-LN---WSPGSAMVVVMASKGYPGSY--EKGSEIQNLEEAEQVAPSVKIFHAGTALDA 459 (519)
Q Consensus 386 ~~G~d~~~~~i~~~~g~~~~~~-~~---~~~~~a~~~~l~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 459 (519)
.+|+|+.+++++++.|...+.. .. ...++++...+.++.....+ ..+ .+..+ ..+.++++-. -. .
T Consensus 302 ~tGvDlve~~ir~a~G~~~~~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G-~l~~v----~~p~~vrvd~---~v-~ 372 (1201)
T TIGR02712 302 VTGLDLVEWMIRIAAGELPDFASLNISLTPRGAAIEARVYAENPAKNFQPSPG-LLTDV----QFPDDVRVDT---WV-E 372 (1201)
T ss_pred HhCCCHHHHHHHHHcCCCCCccccccccccceEEEEEEEeccCcccCcCCCCc-eeeEE----ECCCeEEEec---ee-c
Confidence 6799999999999999854432 11 12356666655554311111 011 11111 1122322211 11 2
Q ss_pred CCcEE--ecCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeeccccccccccccccccC
Q 010065 460 DGNFI--ATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFATR 518 (519)
Q Consensus 460 ~g~~~--~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~~ 518 (519)
.|... ...++++.|+++|+|+++|+++++++++.++++| .|.|.-+..+.|...++.|+
T Consensus 373 ~G~~V~~~~d~~la~vI~~g~~r~eA~~~~~~al~~i~i~G~~tn~~~l~~~~~~~~~~~~~~~t~ 438 (1201)
T TIGR02712 373 TGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYGIETNLDYLRSILSSETFRSAQVSTR 438 (1201)
T ss_pred CCCEECCccCCCeEEEEEEECCHHHHHHHHHHHHhceEEcCcCcCHHHHHHHhcChhhcCCCccch
Confidence 23222 2458999999999999999999999999999998 36667677777777666654
No 36
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.8e-37 Score=305.65 Aligned_cols=297 Identities=21% Similarity=0.194 Sum_probs=241.5
Q ss_pred cceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCC
Q 010065 54 SSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDV 133 (519)
Q Consensus 54 ~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~ 133 (519)
++++++|++||.|+||+||+.|+.+ +..++... ++++..++....+.+... .
T Consensus 1 ~~~~vavl~gG~s~e~eVsl~sa~~------------------v~~~l~~~-~~~~~~~~~~~~~~~~~~---------~ 52 (317)
T COG1181 1 GKMKVAVLLGGRSAEREVSLLSAKA------------------VLRALKGF-GYDVTPVDITEAGLWMLD---------K 52 (317)
T ss_pred CceEEEEeeCCccccceEEEecHHH------------------HHHHHhhc-CceeEEEeccccceEEec---------c
Confidence 3689999999999999999999765 56666654 777766654432222211 0
Q ss_pred CCHHHHHHHHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeec
Q 010065 134 LDGDAVISFCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTF 208 (519)
Q Consensus 134 ~d~~~l~~~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v 208 (519)
.... ..-.++|.+|| .+||+.+|++ |+.+|+||+|++..++..++||..+|++++..|+|++++..+
T Consensus 53 ~~~~-----~~~~~~~vvfp~lhG~~gEDg~iqg~---le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~ 124 (317)
T COG1181 53 EVTK-----RVLQKADVVFPVLHGPYGEDGTIQGL---LELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVAL 124 (317)
T ss_pred ccch-----hhcccCCEEEEeCCCCCCCCchHHHH---HHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeee
Confidence 0001 11246788998 3899988887 999999999999999999999999999999999999999888
Q ss_pred CCH----HHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEE
Q 010065 209 TDP----NAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALV 284 (519)
Q Consensus 209 ~~~----~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~ 284 (519)
... ...++..+.++||++|||.+.++|.|+.++++.+|+..+++.++. ++.++++|+|+.|+|++|.++.
T Consensus 125 ~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~------~d~~vl~e~~~~~rei~v~vl~ 198 (317)
T COG1181 125 TRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFK------YDRDVLREQGITGREIEVGVLG 198 (317)
T ss_pred ecccchhHHHHHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHH------hCCceeeccCCCcceEEEEecC
Confidence 742 234566678899999999999999999999999999998888875 6799999999999999999996
Q ss_pred eCC--eeEEecccccc-ccccCCCCCCCC-CCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEE
Q 010065 285 DGE--NAIPLESAQDH-KRVGDGDTGPNT-GGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIE 360 (519)
Q Consensus 285 dg~--~~~~~~~~~~~-~~~~~~~~~~~~-g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~ 360 (519)
+.. ..+++.++... ..+|+|++||.. |++.+.+|++ ++++..+++++.|+ ++++++||. |++++||+++
T Consensus 199 ~~~~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~-lt~~~~~~i~~lA~----~a~~alg~~--g~~rvDf~~~ 271 (317)
T COG1181 199 NDYEEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAG-LTDEIHEEIKELAL----RAYKALGCL--GLARVDFFVD 271 (317)
T ss_pred CcccceecCceEEecCCCeEEeeeccccCCCCceeeCCCC-CCHHHHHHHHHHHH----HHHHhcCCC--ceEEEEEEEE
Confidence 433 34445555544 589999999977 7778888998 99999999999885 799999999 9999999999
Q ss_pred cCCCceEEEEEeCCCCCCchHHHHHHh----CCCHHHHHHHHHh
Q 010065 361 KKSGLPKLIEYNVRFGDPECQVLMVRL----ESDLAEVLLAACR 400 (519)
Q Consensus 361 ~~g~~~~viEiN~R~G~~~~~~~~~~~----G~d~~~~~i~~~~ 400 (519)
++.+++|++|||+.||+|.+ +++|.+ |+++.++...+..
T Consensus 272 ~~~g~~~l~EvNt~PG~t~~-sl~P~~~~~~gi~~~~L~~~~~e 314 (317)
T COG1181 272 DDEGEFVLLEVNTNPGMTAM-SLFPKAAAAAGISFAILVLRFVE 314 (317)
T ss_pred CCCCCEEEEEEeCCCCCccc-ccchhhHHHcCCCHHHHHHHHHh
Confidence 92237999999999999887 777765 9999888877654
No 37
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=2.2e-35 Score=301.77 Aligned_cols=347 Identities=22% Similarity=0.246 Sum_probs=252.6
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC-CcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG-ISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
+|+|||+|.....+++++++. |+++++++++... ....++ ..+ ..+..|.+.+.++++. .|+|....|.... .
T Consensus 1 ~igiiG~gql~~~l~~aa~~l-G~~v~~~d~~~~~p~~~~ad-~~~-~~~~~d~~~i~~~a~~--~dvit~e~e~i~~-~ 74 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPL-GIKVHVLDPDANSPAVQVAD-HVV-LAPFFDPAAIRELAES--CDVITFEFEHVDV-E 74 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEECCCCCCChhHhCc-eeE-eCCCCCHHHHHHHHhh--CCEEEeCcCcCCH-H
Confidence 489999997777777777766 9999998765222 122222 122 3567788899998875 4666555555332 2
Q ss_pred HHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC-CCCcEEEe
Q 010065 163 LANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA-AGKGVIVA 241 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~-gs~GV~~v 241 (519)
..+.+++.|+++. ++++++.+++||..+|++|+++|||+|++..+.+.+++.+++++++||+|+||..++ +|+|+.++
T Consensus 75 ~l~~l~~~g~~~~-p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v 153 (352)
T TIGR01161 75 ALEKLEARGVKLF-PSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQELGFPVVLKARTGGYDGRGQYRI 153 (352)
T ss_pred HHHHHHhCCCeEC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEE
Confidence 3456888888865 999999999999999999999999999999999999999989999999999999876 89999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEE--eCCeeEEeccccccccccCCCCCCCCCCceEEec
Q 010065 242 MTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALV--DGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSP 318 (519)
Q Consensus 242 ~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~--dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P 318 (519)
++.+|+.++++.+ .+..+||||||+| +|+++.+++ +|+ +..++......+ + +. ...++.|
T Consensus 154 ~~~~el~~a~~~~--------~~~~~lvEe~I~~~~E~sv~~~~~~~G~-~~~~~~~~~~~~--~---g~---~~~~~~p 216 (352)
T TIGR01161 154 RNEADLPQAAKEL--------GDRECIVEEFVPFERELSVIVARSADGE-TAFYPVVENIHQ--D---GI---LRYVVAP 216 (352)
T ss_pred CCHHHHHHHHHhc--------CCCcEEEEecCCCCeEEEEEEEEcCCCC-EEEECCcccEEe--C---CE---EEEEECC
Confidence 9999999988875 2358999999995 999999886 444 333433322111 0 00 0134568
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 319 APVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 319 ~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
+. ++++..+++.+.+ .++++++++. |++++||+++++| ++||+|||||+|++.++++ ..++.+.++.++++
T Consensus 217 ~~-~~~~~~~~~~~~a----~~i~~~l~~~--G~~~ve~~~~~dg-~~~v~EinpR~~~sg~~~~-~~~~~s~f~~~~ra 287 (352)
T TIGR01161 217 AA-VPDAIQARAEEIA----RRLMEELGYV--GVLAVEMFVLPDG-RLLINELAPRVHNSGHYTL-DGCSTSQFEQHLRA 287 (352)
T ss_pred CC-CCHHHHHHHHHHH----HHHHHHcCce--eEEEEEEEEeCCC-cEEEEEecCCCCCcCcCch-hhccccHHHHHHHH
Confidence 87 8888777777765 4677888864 9999999999887 8999999999998887544 45799999999999
Q ss_pred HhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecC
Q 010065 399 CRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGK 478 (519)
Q Consensus 399 ~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~ 478 (519)
++|..... +.....+++.+++... .. ....+..+++ .+++++++++... ...+.++|||...|+
T Consensus 288 ~~g~~l~~-~~~~~~~~m~n~~~~~-~~-------~~~~~~~~~~-~~~~~~~~y~k~~------~~~~rk~Ghi~~~~~ 351 (352)
T TIGR01161 288 ILGLPLGS-TELLLPSVMVNLLGTE-DD-------VIPLWEEILA-LPGAKLHWYGKAE------VRPGRKVGHVNLVGS 351 (352)
T ss_pred HcCCCCCC-ccccCCEEEEEEecCc-cc-------hHHHHHHHHh-CCCCEEEECCCCC------CCCCCcceEEEeecC
Confidence 99974332 2222225666666642 00 1123333322 4677788776532 234567899998886
Q ss_pred C
Q 010065 479 D 479 (519)
Q Consensus 479 t 479 (519)
+
T Consensus 352 ~ 352 (352)
T TIGR01161 352 D 352 (352)
T ss_pred C
Confidence 5
No 38
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=2.3e-35 Score=337.22 Aligned_cols=375 Identities=21% Similarity=0.231 Sum_probs=271.4
Q ss_pred ccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 82 RVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 82 ~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
.+||||||+|.. ..+++++|++. |+++++++++....... ..++.. ++.+.+.+.+.++++++++|
T Consensus 6 ~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~-G~~vi~v~~np~~~~~~~~~aD~~-y~~p~~~~~v~~ii~~e~~D 83 (1050)
T TIGR01369 6 IKKILVIGSGPIVIGQAAEFDYSGSQACKALKEE-GYRVILVNSNPATIMTDPEMADKV-YIEPLTPEAVEKIIEKERPD 83 (1050)
T ss_pred CcEEEEECCCcchhcchhcccchHHHHHHHHHHc-CCEEEEEecchhhccCChhcCCEE-EECCCCHHHHHHHHHHhCCC
Confidence 478999999842 13578888876 99999997653221111 112222 33455788999999999999
Q ss_pred EEEE--CCChhhHH----HHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC
Q 010065 150 LVVV--GPEAPLVS----GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA 223 (519)
Q Consensus 150 ~Vi~--g~E~~~~~----~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~ 223 (519)
+|+| +++.++.. ..+..++.+|++++|++++++.+++||..+|++|+++|+|+|++..+++.+++.++++++||
T Consensus 84 aIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~igy 163 (1050)
T TIGR01369 84 AILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSVEEALAAAKEIGY 163 (1050)
T ss_pred EEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHhCC
Confidence 9999 45665421 12456899999999999999999999999999999999999999999999999888999999
Q ss_pred CEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccc
Q 010065 224 PIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRV 301 (519)
Q Consensus 224 P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~ 301 (519)
|+||||+.+.||+|+.++++++|+.+++..++.. +...++||||||+| +|+++++++|.. ++..++....
T Consensus 164 PvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~----s~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~~~~e~---- 235 (1050)
T TIGR01369 164 PVIVRPAFTLGGTGGGIAYNREELKEIAERALSA----SPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMEN---- 235 (1050)
T ss_pred CeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhc----CCCCcEEEEEcccCceEEEEEEEEeCCCCEEEEeecee----
Confidence 9999999999999999999999999998887642 12368999999999 899999998743 3443433222
Q ss_pred cCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchH
Q 010065 302 GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQ 381 (519)
Q Consensus 302 ~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~ 381 (519)
++ ..+.++|++..+.|+..++++..+++++.+ .++++++|+. |.+||||+++++++++||+|||||++++.+
T Consensus 236 ~~-p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a----~~i~~~Lg~~--G~~~Vef~l~~~~g~~~viEiNPR~~~s~~- 307 (1050)
T TIGR01369 236 FD-PMGVHTGDSIVVAPSQTLTDKEYQMLRDAS----IKIIRELGIE--GGCNVQFALNPDSGRYYVIEVNPRVSRSSA- 307 (1050)
T ss_pred cc-CcceecCceEEEecCCCCCHHHHHHHHHHH----HHHHHHcCCc--ceeEEEEEEECCCCcEEEEEeecCcCcchh-
Confidence 22 235677777778898778888888888876 4688888877 999999999976447999999999987654
Q ss_pred HHHHHhCCCHHHHHHHHHhCCCCCCCcc-cCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCC
Q 010065 382 VLMVRLESDLAEVLLAACRGELTGVTLN-WSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDAD 460 (519)
Q Consensus 382 ~~~~~~G~d~~~~~i~~~~g~~~~~~~~-~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (519)
.....+|+++.+..+++++|.....-.+ .. +.... .+..... .+.. + .+.+.+.+++. ..
T Consensus 308 l~s~atG~pl~~~~~~~alG~~l~~~~n~i~-g~~~~------~~~p~~~---~~~~-----k-~p~~~~~~~~~---~~ 368 (1050)
T TIGR01369 308 LASKATGYPIAKVAAKLAVGYGLDELKNPVT-GTTPA------SFEPSLD---YVVV-----K-IPRWDFDKFAG---VD 368 (1050)
T ss_pred hhhHHhCCCHHHHHHHHHcCCCchhhcCCCc-CcCcc------ccCcCCC---eEEE-----E-EEeCCCCCCCc---cc
Confidence 3344679999999999999983221111 11 10000 0100000 0000 0 01111111111 11
Q ss_pred CcEEecCCeEEEEEEecCCHHHHHHHHHHHhhc
Q 010065 461 GNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEE 493 (519)
Q Consensus 461 g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~ 493 (519)
.++.+....+|+|++.|.|.+||.+++.+.++.
T Consensus 369 ~~~~~~~k~~G~v~~~g~~~~ea~~ka~~~~~~ 401 (1050)
T TIGR01369 369 RKLGTQMKSVGEVMAIGRTFEEALQKALRSLEI 401 (1050)
T ss_pred CCcCcccceeeEEEEECCCHHHHHHHHHHHhcc
Confidence 223333446999999999999999999999874
No 39
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=3.9e-35 Score=333.52 Aligned_cols=408 Identities=23% Similarity=0.249 Sum_probs=284.9
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CCC--CcCCCCCcc-cc-----CCCCCCHHHHHHHHHHcCCcEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NAG--ISNSGDATC-IP-----DLDVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~~--~~~~~~~~~-v~-----~~d~~d~~~l~~~~~~~~id~Vi 152 (519)
.+||||.+.|.....+++++++. |++++.+..+ +.. ....++... +. .-+..|.+.++++++++++|+|+
T Consensus 5 ~kkvLianrGeiavri~raa~el-Gi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~ 83 (1146)
T PRK12999 5 IKKVLVANRGEIAIRIFRAATEL-GIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIH 83 (1146)
T ss_pred ccEEEEECCcHHHHHHHHHHHHc-CCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEE
Confidence 46899999997777778887765 9999877543 211 111121111 11 11345789999999999999999
Q ss_pred EC----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEE
Q 010065 153 VG----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIV 226 (519)
Q Consensus 153 ~g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~V 226 (519)
|+ +|.. .+++.++..|++++|++++++..+.||..+|++++++|||+|++. .+.+.+++.++++++|||+|
T Consensus 84 PgyGflsE~~---~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvV 160 (1146)
T PRK12999 84 PGYGFLSENP---EFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIM 160 (1146)
T ss_pred eCCCccccCH---HHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEE
Confidence 96 4554 356778999999999999999999999999999999999998765 47899999999999999999
Q ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEecccccccccc
Q 010065 227 VKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVG 302 (519)
Q Consensus 227 vKP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~ 302 (519)
+||..|+||+|+++|++.+||.++++.+... ..++ ++.+++|+||+| +++++.++.|+. +++.+...... ..
T Consensus 161 VKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg--~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcs--vq 236 (1146)
T PRK12999 161 LKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFG--NDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCS--VQ 236 (1146)
T ss_pred EEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcC--CCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccccc--ee
Confidence 9999999999999999999999999886542 1232 468999999998 789999998753 34433211000 00
Q ss_pred CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHH
Q 010065 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQV 382 (519)
Q Consensus 303 ~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~ 382 (519)
.... ......|+..++++..+++.+.+ .++++++|+. |.+++||+++++| ++||+|||||++.... .
T Consensus 237 rr~q-----k~ie~aP~~~L~~~~~~~l~~~A----~kl~~algy~--G~gtVEflvd~dg-~~yfIEINpRlqveh~-v 303 (1146)
T PRK12999 237 RRHQ-----KVVEIAPAPGLSEELRERICEAA----VKLARAVGYV--NAGTVEFLVDADG-NFYFIEVNPRIQVEHT-V 303 (1146)
T ss_pred ecCc-----cEEEEcCCCCCCHHHHHHHHHHH----HHHHHHcCCC--ceEEEEEEEECCC-CEEEEEEECCCCCcch-H
Confidence 0000 01224576558888888888776 4677888876 9999999999876 6999999999987543 3
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCCC-C-------cccCCCcEEEEEEecCCCCC--C-CCCCcccccchhhhccCCCeEEE
Q 010065 383 LMVRLESDLAEVLLAACRGELTGV-T-------LNWSPGSAMVVVMASKGYPG--S-YEKGSEIQNLEEAEQVAPSVKIF 451 (519)
Q Consensus 383 ~~~~~G~d~~~~~i~~~~g~~~~~-~-------~~~~~~~a~~~~l~~~~~~~--~-~~~~~~i~~~~~~~~~~~~~~~~ 451 (519)
....+|+|+.++++++++|..... . -....++++...+.... |. . +..| .|..+... ...++++.
T Consensus 304 te~~tGvDlv~~~iriA~G~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aed-p~~~f~P~~G-~i~~~~~p--~~~~vr~d 379 (1146)
T PRK12999 304 TEEVTGIDIVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTED-PANNFMPDTG-RITAYRSP--GGFGVRLD 379 (1146)
T ss_pred HHHHhCcCHHHHHHHHHCCCCCCccccccccccccccceeEEEEEEEeec-CccCccCCCc-EEEEEEcC--CCCcEEee
Confidence 345579999999999999984332 1 01223677876655543 21 1 1111 22221110 00122221
Q ss_pred EeeeeecCCC-cEEecCCe-EEEEEEecCCHHHHHHHHHHHhhccccCC-----eeecccccccccccccccc
Q 010065 452 HAGTALDADG-NFIATGGR-VLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 452 ~~~~~~~~~g-~~~~~~~r-vg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~ 517 (519)
. +.. ..| .+....++ +++|+++|+|+++|.+++.++++.+++.| .|.++=+.++.|...++.|
T Consensus 380 ~-~~~--~~g~~v~~~~Ds~l~kvi~~g~~~~~A~~~~~~aL~~~~i~gv~tn~~~l~~~~~~~~f~~~~~~t 449 (1146)
T PRK12999 380 G-GNA--FAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFRIRGVKTNIPFLENVLKHPDFRAGDYTT 449 (1146)
T ss_pred c-ccc--CCCCeeCCCccCCceEEEEEcCCHHHHHHHHHHHHhhcEEecccCcHHHHHHHhCCHhhcCCCccc
Confidence 1 110 123 23334444 67899999999999999999999999999 2445555556665555444
No 40
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=9.5e-36 Score=339.02 Aligned_cols=303 Identities=16% Similarity=0.228 Sum_probs=240.8
Q ss_pred CccEEEEEeCChhH-----------HHHHHHHHhcCCCcEEEEecCCCCCc-CCCCCccccCCCCCCHHHHHHHHHHcCC
Q 010065 81 QRVVVLVIGGGGRE-----------HALCYALKRSHSCDAVFCAPGNAGIS-NSGDATCIPDLDVLDGDAVISFCRKWSV 148 (519)
Q Consensus 81 ~~~~vliiG~g~~~-----------~~l~~~l~~~~g~~~v~~~~~~~~~~-~~~~~~~v~~~d~~d~~~l~~~~~~~~i 148 (519)
+++||||||+|..+ ...+++|++. |++++.++.+....+ ..+.++.. ++.+.+.+.++++++++++
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~-G~~tI~v~~npetvstd~~~aD~~-y~~pl~~e~vl~i~~~e~~ 650 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDA-GYETIMMNSNPETVSTDYDTSDRL-YFEPLTVEDVLNVIDLERP 650 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHc-CCeEEEEeCCCccccCCcccCCeE-EEEeCCHHHHHHHHHHhCC
Confidence 57899999999532 2367888877 999998864421111 11122333 3455669999999999999
Q ss_pred cEEEE--CCChhhH--HHHHHHHHH---------CCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHH
Q 010065 149 GLVVV--GPEAPLV--SGLANKLVK---------AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAK 215 (519)
Q Consensus 149 d~Vi~--g~E~~~~--~~~a~~le~---------~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~ 215 (519)
|+|+| |+|.++. ..+.+.|++ .|++++|++++++.+++||..++++|+++|||+|++..+.+.+++.
T Consensus 651 d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~eea~ 730 (1102)
T PLN02735 651 DGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEADAL 730 (1102)
T ss_pred CEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCHHHHH
Confidence 99998 6677642 233333332 2789999999999999999999999999999999999999999998
Q ss_pred HHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEEEeCC-eeEEec
Q 010065 216 QYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFALVDGE-NAIPLE 293 (519)
Q Consensus 216 ~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l~dg~-~~~~~~ 293 (519)
++++++|||+||||+.++||+|+.++++.+||.++++.++.. ..+.+++||+||+ |+|++|++++|++ .+...
T Consensus 731 ~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~----~~~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~~- 805 (1102)
T PLN02735 731 AIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEV----DPERPVLVDKYLSDATEIDVDALADSEGNVVIG- 805 (1102)
T ss_pred HHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHh----cCCCCEEEEEecCCcEEEEEEEEECCCCCEEEe-
Confidence 889999999999999999999999999999999999998753 2346799999998 5999999999753 34322
Q ss_pred cccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeC
Q 010065 294 SAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNV 373 (519)
Q Consensus 294 ~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~ 373 (519)
....+.. +.+++.|++....|+..++++..+++++.+. ++++++++. |++++||++++++ ++||+|+||
T Consensus 806 ~i~e~~~----~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~----ki~~~L~~~--G~~~vqf~v~~dg-~~yviEiNp 874 (1102)
T PLN02735 806 GIMEHIE----QAGVHSGDSACSLPTQTIPSSCLATIRDWTT----KLAKRLNVC--GLMNCQYAITPSG-EVYIIEANP 874 (1102)
T ss_pred cceEeee----ccCccCCCccEEecCCCCCHHHHHHHHHHHH----HHHHHcCCc--ceeeEEEEEcCCC-cEEEEEEeC
Confidence 2333321 4567888888888986699999888888764 566788876 9999999998766 799999999
Q ss_pred CCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 374 RFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 374 R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
|++.+.. .+...+|+|+.++.+++++|.
T Consensus 875 R~s~t~p-~~~katGidl~~~~~~~~~G~ 902 (1102)
T PLN02735 875 RASRTVP-FVSKAIGHPLAKYASLVMSGK 902 (1102)
T ss_pred CCCccHH-HHHHHHCCCHHHHHHHHHcCC
Confidence 9987554 455667999999999999998
No 41
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=3.7e-35 Score=335.53 Aligned_cols=303 Identities=21% Similarity=0.275 Sum_probs=243.1
Q ss_pred CccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCCCCCCHHHHHHHHHHcCC
Q 010065 81 QRVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDLDVLDGDAVISFCRKWSV 148 (519)
Q Consensus 81 ~~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~d~~d~~~l~~~~~~~~i 148 (519)
+++||||+|+|.. ...++++|++. |++++.++.+...... .+..+.+ ++++.+.+.++++++++++
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~-G~~vI~v~~npetvs~d~~~~D~l-y~ep~~~e~vl~i~~~e~i 630 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALREL-GYETIMINYNPETVSTDYDTSDRL-YFEPLTFEDVMNIIELEKP 630 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhC-CCEEEEEecCCccccccccccceE-EEecCCHHHHHHHHhhcCC
Confidence 3589999999943 24668888877 9999988654221111 1112223 4566678999999999999
Q ss_pred cEEEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEE
Q 010065 149 GLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 149 d~Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvK 228 (519)
|+|++.........+++.+++.|+|++|++++++..+.||..|+++|+++|||+|++..+.+.+++.+++++++||+|||
T Consensus 631 dgVI~~~gg~~~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~igyPvIVK 710 (1050)
T TIGR01369 631 EGVIVQFGGQTPLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIGYPVLVR 710 (1050)
T ss_pred CEEEEccCcHhHHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhcCCCEEEE
Confidence 99998432222335788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-CcEEEEEEEEeCCeeEEeccccccccccCCCCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-GEEASFFALVDGENAIPLESAQDHKRVGDGDTG 307 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~ 307 (519)
|+++.||+|+.+++|.+||.++++++... +.+.+++||+||+ |+|++++++++++.+...... .+.. ..+
T Consensus 711 P~~~~Gg~gv~iv~~~eeL~~~l~~a~~~----s~~~~vlVeefI~~G~E~~Vd~l~d~g~v~i~~i~-e~~~----~~g 781 (1050)
T TIGR01369 711 PSYVLGGRAMEIVYNEEELRRYLEEAVEV----SPEHPVLIDKYLEDAVEVDVDAVSDGEEVLIPGIM-EHIE----EAG 781 (1050)
T ss_pred ECCCCCCCCeEEECCHHHHHHHHHHHHHh----CCCCCEEEeecCCCCeEEEEEEEEeCCEEEEEEEE-Eeec----ccC
Confidence 99999999999999999999999987642 2456799999999 799999999987755543322 2211 345
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHh
Q 010065 308 PNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRL 387 (519)
Q Consensus 308 ~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~ 387 (519)
.+.|.+....|+..++++..+++.+.+ .++++++|+. |++|+||++++++ +|+||+|||++++.. .+...+
T Consensus 782 v~sGds~~~~P~~~l~~~~~~~i~~~a----~ki~~aLgi~--G~~~vqf~~~~~~--~yvIEvNpR~s~t~p-~vs~at 852 (1050)
T TIGR01369 782 VHSGDSTCVLPPQTLSAEIVDRIKDIV----RKIAKELNVK--GLMNIQFAVKDGE--VYVIEVNPRASRTVP-FVSKAT 852 (1050)
T ss_pred CcCCCceEEecCCCCCHHHHHHHHHHH----HHHHHHCCCc--ceEEEEEEEECCe--EEEEEEeCCCCchHH-HHHHHH
Confidence 667777778888668988888888766 4677888876 9999999999765 999999999987543 344567
Q ss_pred CCCHHHHHHHHHhCCC
Q 010065 388 ESDLAEVLLAACRGEL 403 (519)
Q Consensus 388 G~d~~~~~i~~~~g~~ 403 (519)
|+|+.++++++++|..
T Consensus 853 Gi~l~~~~~~~~lG~~ 868 (1050)
T TIGR01369 853 GVPLIKLATRVMLGKK 868 (1050)
T ss_pred CCCHHHHHHHHHcCCC
Confidence 9999999999999983
No 42
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=3.1e-35 Score=336.19 Aligned_cols=300 Identities=20% Similarity=0.280 Sum_probs=241.2
Q ss_pred CccEEEEEeCChhH-----------HHHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCCCCCCHHHHHHHHHHcCC
Q 010065 81 QRVVVLVIGGGGRE-----------HALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDLDVLDGDAVISFCRKWSV 148 (519)
Q Consensus 81 ~~~~vliiG~g~~~-----------~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~d~~d~~~l~~~~~~~~i 148 (519)
.+++|||+|+|..+ ..++++|++. |++++.++.+...... ....+.. ++++.+.+.++++++++++
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~-G~~vI~vn~npetvs~~~~~aD~~-y~ep~~~e~vl~I~~~e~~ 631 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKE-GYETIMINNNPETVSTDYDTADRL-YFEPLTLEDVLNVAEAENI 631 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHc-CCEEEEEeCCccccccccccCceE-EEccCCHHHHHHHHhhcCC
Confidence 46899999998531 3357888877 9999988654211111 1112333 4566678999999999999
Q ss_pred cEEEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEE
Q 010065 149 GLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 149 d~Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvK 228 (519)
|+|++..+......+++.+++.|+|++|++++++..+.||..|+++|+++|||+|++..+.+.+++.++++++|||+|+|
T Consensus 632 dgVI~~~g~~~~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~ee~~~~~~~igyPvVVK 711 (1068)
T PRK12815 632 KGVIVQFGGQTAINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRIGYPVLIR 711 (1068)
T ss_pred CEEEEecCcHHHHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHhcCCCEEEE
Confidence 99999533333446788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGP 308 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~ 308 (519)
|+++.||+|+.++++.+|+.++++.+. +.+.++|||+||+|.|+++++++||+.+... ....+.. ..+.
T Consensus 712 P~~~~Gg~gv~iv~~~eeL~~~l~~~~------s~~~~vlIeefI~G~E~~Vd~i~dg~~v~i~-~i~e~~e----~~gv 780 (1068)
T PRK12815 712 PSYVIGGQGMAVVYDEPALEAYLAENA------SQLYPILIDQFIDGKEYEVDAISDGEDVTIP-GIIEHIE----QAGV 780 (1068)
T ss_pred eCCCCCCCCEEEECCHHHHHHHHHHhh------cCCCCEEEEEeecCceEEEEEEEcCCceEEe-eEEEEee----ccCC
Confidence 999999999999999999999998873 2457899999999999999999988754422 2232211 2345
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhC
Q 010065 309 NTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLE 388 (519)
Q Consensus 309 ~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G 388 (519)
+.|++..+.|...++++..+++++.+. ++++++++. |++|+||++++++ +|+||+|||+|++.. .+...+|
T Consensus 781 ~sGds~~v~pp~~l~~~~~~~i~~~a~----ki~~~L~~~--G~~niqf~v~~~~--~yviEiNpR~s~t~~-~~skatG 851 (1068)
T PRK12815 781 HSGDSIAVLPPQSLSEEQQEKIRDYAI----KIAKKLGFR--GIMNIQFVLANDE--IYVLEVNPRASRTVP-FVSKATG 851 (1068)
T ss_pred cCCCeeEEECCCCCCHHHHHHHHHHHH----HHHHHcCCc--cEEEEEEEEECCc--EEEEEEeCCCCccHH-HHHHHHC
Confidence 667666677665589888888888764 567788876 9999999999766 999999999988654 3444579
Q ss_pred CCHHHHHHHHHhCC
Q 010065 389 SDLAEVLLAACRGE 402 (519)
Q Consensus 389 ~d~~~~~i~~~~g~ 402 (519)
+|+.++++++++|.
T Consensus 852 v~l~~~~~~~~lG~ 865 (1068)
T PRK12815 852 VPLAKLATKVLLGK 865 (1068)
T ss_pred CCHHHHHHHHHcCC
Confidence 99999999999998
No 43
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=5.6e-35 Score=335.30 Aligned_cols=300 Identities=23% Similarity=0.318 Sum_probs=242.5
Q ss_pred CccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCCCCCCHHHHHHHHHHcCC
Q 010065 81 QRVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDLDVLDGDAVISFCRKWSV 148 (519)
Q Consensus 81 ~~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~d~~d~~~l~~~~~~~~i 148 (519)
.++||||||+|.. ...++++|++. |++++.++.+...... ....+.+ ++++.+.+.++++++++++
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~-G~~vi~v~~npetvs~~~~~aD~~-y~e~~~~e~v~~i~~~e~~ 630 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREA-GYETIMVNCNPETVSTDYDTSDRL-YFEPLTLEDVLEIIEKEKP 630 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHC-CCEEEEEeCCccccccccchhhhe-eecCCCHHHHHHHHHHcCC
Confidence 4689999999853 14568888877 9999988654221111 1112233 4577789999999999999
Q ss_pred cEEEE--CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEE
Q 010065 149 GLVVV--GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIV 226 (519)
Q Consensus 149 d~Vi~--g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~V 226 (519)
|+|++ +++.+. .++..|+++|+|++|++++++.+++||..++++|+++|||+|++..+.+.+++.+++++++||+|
T Consensus 631 dgVi~~~g~~~~~--~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~igyPvv 708 (1066)
T PRK05294 631 KGVIVQFGGQTPL--KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIGYPVL 708 (1066)
T ss_pred CEEEEEeCchhHH--HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhcCCCeE
Confidence 99997 667664 57888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCc-EEEEEEEEeCCeeEEeccccccccccCCC
Q 010065 227 VKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGE-EASFFALVDGENAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 227 vKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~-E~sv~~l~dg~~~~~~~~~~~~~~~~~~~ 305 (519)
|||+++.||.|+.+++|.+|+.++++.+... ..+.+++||+||+|. |+++++++||+.+.... ...+.. .
T Consensus 709 VKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~----s~~~~vlIEefI~G~~E~sV~~v~dg~~v~i~~-i~e~i~----~ 779 (1066)
T PRK05294 709 VRPSYVLGGRAMEIVYDEEELERYMREAVKV----SPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGG-IMEHIE----E 779 (1066)
T ss_pred EEeCCCCCCCcEEEECCHHHHHHHHHHHHhh----CCCCcEEEEecCCCCEEEEEEEEecCCeEEEee-eEEeee----e
Confidence 9999999999999999999999999987642 245789999999997 99999999887443322 222211 2
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH
Q 010065 306 TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV 385 (519)
Q Consensus 306 ~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~ 385 (519)
.+.+.|+.....|+..++++..+++++.+ .++++++|+. |++|+||++++++ +|++|||||++++.. .+..
T Consensus 780 ~gv~~Gds~~~~p~~~l~~~~~~~i~~~a----~~i~~aLg~~--G~~~vqf~~~~~~--~yViEiNpR~s~t~~-~~s~ 850 (1066)
T PRK05294 780 AGVHSGDSACSLPPQTLSEEIIEEIREYT----KKLALELNVV--GLMNVQFAVKDDE--VYVIEVNPRASRTVP-FVSK 850 (1066)
T ss_pred ccccCCCCcEEecCCCCCHHHHHHHHHHH----HHHHHHcCCe--eeEEEEEEEECCe--EEEEEEecCCCccHH-HHHH
Confidence 34566777777776558988888888776 4677888876 9999999999765 999999999987543 3445
Q ss_pred HhCCCHHHHHHHHHhCC
Q 010065 386 RLESDLAEVLLAACRGE 402 (519)
Q Consensus 386 ~~G~d~~~~~i~~~~g~ 402 (519)
.+|+|+.++++++++|.
T Consensus 851 atGi~~~~~~~~~~lG~ 867 (1066)
T PRK05294 851 ATGVPLAKIAARVMLGK 867 (1066)
T ss_pred HhCccHHHHHHHHHcCC
Confidence 57999999999999998
No 44
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.7e-35 Score=337.94 Aligned_cols=375 Identities=22% Similarity=0.232 Sum_probs=272.7
Q ss_pred ccEEEEEeCChhH-----------HHHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 82 RVVVLVIGGGGRE-----------HALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 82 ~~~vliiG~g~~~-----------~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
.+||||+|+|... .+++++|++. |+++++++++...... ...++.. ++.+.+.+.+.++++++++|
T Consensus 7 ~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~-G~~vi~v~~~p~~~~~~~~~aD~~-y~~p~~~e~l~~ii~~e~~D 84 (1066)
T PRK05294 7 IKKILIIGSGPIVIGQACEFDYSGTQACKALREE-GYRVVLVNSNPATIMTDPEMADAT-YIEPITPEFVEKIIEKERPD 84 (1066)
T ss_pred CCEEEEECCchhhhcccccccchHHHHHHHHHHc-CCEEEEEcCCcccccCCcccCCEE-EECCCCHHHHHHHHHHHCcC
Confidence 4789999998531 3578888877 9999998765322111 1112222 33455688999999999999
Q ss_pred EEEE--CCChhhHHHH----HHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC
Q 010065 150 LVVV--GPEAPLVSGL----ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA 223 (519)
Q Consensus 150 ~Vi~--g~E~~~~~~~----a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~ 223 (519)
+|+| +++.++.... ...|+++|++++|++++++..++||..+|++|+++|+|+|++..+++.+++.++++++||
T Consensus 85 ~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~ 164 (1066)
T PRK05294 85 AILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSMEEALEVAEEIGY 164 (1066)
T ss_pred EEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCHHHHHHHHHHcCC
Confidence 9999 4666653222 235889999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccc
Q 010065 224 PIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRV 301 (519)
Q Consensus 224 P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~ 301 (519)
|+||||+.+.||.|+.++++.+|+.++++..+.. +....+|||+||+| +|+++.+++|+. .+..++....
T Consensus 165 PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~----s~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~~~~e~---- 236 (1066)
T PRK05294 165 PVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDL----SPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVCSIEN---- 236 (1066)
T ss_pred CeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhh----CCCCeEEEEEcccCceEEEEEEEEcCCCCEEEEeeeee----
Confidence 9999999999999999999999999999876532 23468999999999 799999998653 3443433222
Q ss_pred cCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchH
Q 010065 302 GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQ 381 (519)
Q Consensus 302 ~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~ 381 (519)
++ ..+++.|+...+.|+..++++..+++++.+ .++++++|+.+ |++++||+++++++++||+|||||++++..
T Consensus 237 ~d-p~gih~g~~~~~~Pa~~l~~~~~~~l~~~a----~ki~~aLg~~~-G~~~vef~~~~~~g~~~viEiNPR~~~s~~- 309 (1066)
T PRK05294 237 ID-PMGVHTGDSITVAPAQTLTDKEYQMLRDAS----IAIIREIGVET-GGCNVQFALNPKDGRYIVIEMNPRVSRSSA- 309 (1066)
T ss_pred cc-ccceecCCeEEEeCCCCCCHHHHHHHHHHH----HHHHHHcCCcc-CceEEEEEEECCCCcEEEEEeecCCCccee-
Confidence 12 235677777777898558888888888876 46778888653 999999999964448999999999987653
Q ss_pred HHHHHhCCCHHHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchh-hhccCCCeEEEEeeeeecCC
Q 010065 382 VLMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEE-AEQVAPSVKIFHAGTALDAD 460 (519)
Q Consensus 382 ~~~~~~G~d~~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~ 460 (519)
.....+|.++.+..+++++|.....-.+.-.+.... ... |. ++. +.+ .|.+.+++++.. .
T Consensus 310 ~~s~~tG~pl~~~~~~~~lG~~l~~m~n~~~g~~~~--~~~---p~----------~~~v~~k-~p~~~~~~y~k~---~ 370 (1066)
T PRK05294 310 LASKATGYPIAKVAAKLAVGYTLDEIKNDITGKTPA--SFE---PS----------LDYVVTK-IPRFAFEKFPGA---D 370 (1066)
T ss_pred eeeHhhCCCHHHHHHHHHcCCChHHhcCcccCCCcc--ccc---cc----------CCeEEEE-ccCCccccccCC---C
Confidence 223357999999999999997322111111010000 000 10 111 001 234444444332 2
Q ss_pred CcEEecCCeEEEEEEecCCHHHHHHHHHHHhh
Q 010065 461 GNFIATGGRVLGVTAKGKDVEEAQDRAYLAVE 492 (519)
Q Consensus 461 g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~ 492 (519)
.++.++...+|||++.|+|.+||.+++.+.++
T Consensus 371 ~~~g~~mrk~G~v~~~g~~~e~~~~k~~~~~~ 402 (1066)
T PRK05294 371 RRLGTQMKSVGEVMAIGRTFEESLQKALRSLE 402 (1066)
T ss_pred CCccceecccceEEEEcCCHHHHHHHHHHhcC
Confidence 23444557799999999999999999999875
No 45
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=4e-35 Score=335.29 Aligned_cols=375 Identities=22% Similarity=0.241 Sum_probs=272.4
Q ss_pred ccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 82 RVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 82 ~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
.+||||||+|.. ..+++++|++. |++++.++++....... ..++.+ ++++.+.+.+.++++++++|
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~-G~~vi~v~~np~~~~~d~~~ad~~-y~ep~~~e~l~~ii~~e~~D 84 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYSGTQACLALKEE-GYQVVLVNPNPATIMTDPAPADTV-YFEPLTVEFVKRIIAREKPD 84 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhHHHHHHHHHHHc-CCEEEEEeCCcchhhcCcccCCee-EECCCCHHHHHHHHHHhCcC
Confidence 467888888742 23578888877 99999987543221110 112223 45667789999999999999
Q ss_pred EEEE--CCChhhHHHH----HHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC
Q 010065 150 LVVV--GPEAPLVSGL----ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA 223 (519)
Q Consensus 150 ~Vi~--g~E~~~~~~~----a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~ 223 (519)
+|+| +++.++.... ...|+++|++++|++++++..+.||..++++|+++|||+|++..+++.+++.++++++||
T Consensus 85 ~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~igy 164 (1068)
T PRK12815 85 ALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSVEEALAFAEKIGF 164 (1068)
T ss_pred EEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCHHHHHHHHHHcCC
Confidence 9999 5676653222 235789999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccccccccc
Q 010065 224 PIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESAQDHKRV 301 (519)
Q Consensus 224 P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~~~~~~~ 301 (519)
|+||||+.+.||.|+.+++|.+||.++++.++.. +...++|||+||+| +|+++++++|+ +.+..++.....
T Consensus 165 PvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~----s~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~~~~e~~--- 237 (1068)
T PRK12815 165 PIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQA----SPIHQCLLEESIAGWKEIEYEVMRDRNGNCITVCNMENI--- 237 (1068)
T ss_pred CEEEEECcCCCCCceEEECCHHHHHHHHHHHHhc----CCCCeEEEEEccCCCeEEEEEEEEcCCCCEEEEEeceec---
Confidence 9999999999999999999999999999887642 22368999999999 79999999864 334434333221
Q ss_pred cCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchH
Q 010065 302 GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQ 381 (519)
Q Consensus 302 ~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~ 381 (519)
+ ..+.++|....+.|+..++++..+++++.+ .++++++|+. |.+++||+++++++++|++|||||++++.++
T Consensus 238 -~-p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a----~ki~~~Lg~~--G~~~vef~l~~~~g~~~ViEINPR~~~s~~l 309 (1068)
T PRK12815 238 -D-PVGIHTGDSIVVAPSQTLTDDEYQMLRSAS----LKIISALGVV--GGCNIQFALDPKSKQYYLIEVNPRVSRSSAL 309 (1068)
T ss_pred -c-cccccCCceEEEecCCCCCHHHHHHHHHHH----HHHHHHcCCC--CceEEEEEEECCCCcEEEEEEecCcccchhh
Confidence 1 235666777777898668988888888876 4677888874 9999999999865589999999999887653
Q ss_pred HHHHHhCCCHHHHHHHHHhCCC-CCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCC
Q 010065 382 VLMVRLESDLAEVLLAACRGEL-TGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDAD 460 (519)
Q Consensus 382 ~~~~~~G~d~~~~~i~~~~g~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (519)
....+|+++.+..++++.|.. ++...... +..... .. |. . ..+ +.+ .|.+.+..++.. .
T Consensus 310 -~~~atG~pl~~~~~~~alG~~l~ei~~~i~-g~~~a~--~e---p~-~---d~~-----~~k-~p~~~f~~y~~~---~ 369 (1068)
T PRK12815 310 -ASKATGYPIAKIAAKLAVGYTLNELKNPVT-GLTYAS--FE---PA-L---DYV-----VVK-FPRWPFDKFGYA---D 369 (1068)
T ss_pred -hhHhhCCcHHHHHHHHHcCCChHHhcCCcc-CCcccc--cC---Cc-c---ceE-----EEE-eccCccccccCc---c
Confidence 234679999999999999972 21111111 110000 00 10 0 000 001 133333333321 1
Q ss_pred CcEEecCCeEEEEEEecCCHHHHHHHHHHHhhc
Q 010065 461 GNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEE 493 (519)
Q Consensus 461 g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~ 493 (519)
.++.+....+|+|++.|+|.+||.++|.+.++.
T Consensus 370 ~~~g~kmks~G~v~~ig~~~eea~~ka~~~~~~ 402 (1068)
T PRK12815 370 RTLGTQMKATGEVMAIGRNFESAFQKALRSLEI 402 (1068)
T ss_pred ccccceecccceEEEecCCHHHHHHHHHHhhcC
Confidence 223334455699999999999999999999853
No 46
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.5e-34 Score=268.29 Aligned_cols=377 Identities=22% Similarity=0.271 Sum_probs=283.1
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC-CCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG-NAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~-~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
...|||++|+|....+++..+.+. |.+++.+|.. |.+....+... + .+|..|.++|..+++++++|.|+|--|.-.
T Consensus 11 ~a~kvmLLGSGELGKEvaIe~QRL-G~eViAVDrY~~APAmqVAhrs-~-Vi~MlD~~al~avv~rekPd~IVpEiEAI~ 87 (394)
T COG0027 11 QATKVMLLGSGELGKEVAIEAQRL-GVEVIAVDRYANAPAMQVAHRS-Y-VIDMLDGDALRAVVEREKPDYIVPEIEAIA 87 (394)
T ss_pred CCeEEEEecCCccchHHHHHHHhc-CCEEEEecCcCCChhhhhhhhe-e-eeeccCHHHHHHHHHhhCCCeeeehhhhhh
Confidence 457899999997666777777665 9999999865 32233333222 3 579999999999999999999999766544
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHH-HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcE
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC-DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGV 238 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l-~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV 238 (519)
... ...+|+.|..++ |...+..+++|+...|+++ +++|+|+.+|...++.+++.++++++||||++||..+++++|-
T Consensus 88 td~-L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGq 165 (394)
T COG0027 88 TDA-LVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQ 165 (394)
T ss_pred HHH-HHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCCeecccccccCCCCc
Confidence 433 345889999987 9999999999999999887 6899999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEE--eCCeeEEecccccc-ccccCCCCCCCCCCce
Q 010065 239 IVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALV--DGENAIPLESAQDH-KRVGDGDTGPNTGGMG 314 (519)
Q Consensus 239 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~--dg~~~~~~~~~~~~-~~~~~~~~~~~~g~~~ 314 (519)
.++++++|+.++++.+.....- ...+++||+||+- .|+++-.++ ||...+ +.-..| +.-.||. .
T Consensus 166 svv~~~e~ve~AW~~A~~g~R~--~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~F--c~PIGHrq~dgdY~--------E 233 (394)
T COG0027 166 SVVRSPEDVEKAWEYAQQGGRG--GSGRVIVEEFVKFDFEITLLTVRAVDGTGSF--CAPIGHRQEDGDYR--------E 233 (394)
T ss_pred eeecCHHHHHHHHHHHHhcCCC--CCCcEEEEEEecceEEEEEEEEEEecCCCCc--CCCcccccCCCChh--------c
Confidence 9999999999999998754332 3579999999997 788888776 454322 221122 1222332 4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHH
Q 010065 315 AYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEV 394 (519)
Q Consensus 315 ~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~ 394 (519)
++.|.. +++...++.+..|. ++-.+||-. |++.||+|+..|. +||.|+.|||.+|.. ..+...+.+-+++
T Consensus 234 SWQP~~-mS~~al~~A~~IA~----~vt~aLGG~--GiFGVElfv~gDe--V~FsEVSPRPHDTGm-VTLiSq~lsEF~L 303 (394)
T COG0027 234 SWQPQE-MSEAALEEAQSIAK----RVTDALGGR--GLFGVELFVKGDE--VIFSEVSPRPHDTGM-VTLISQDLSEFAL 303 (394)
T ss_pred ccCccc-cCHHHHHHHHHHHH----HHHHhhcCc--cceeEEEEEeCCE--EEEeecCCCCCCCce-EEEEeccchHHHH
Confidence 577888 89988888887764 566788866 9999999999886 999999999988765 2222238889999
Q ss_pred HHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEE
Q 010065 395 LLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVT 474 (519)
Q Consensus 395 ~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi 474 (519)
+++.++|.+.+.-..+.++++ .++++... . ......++.++... ++..+...|... ...+.|+|..+
T Consensus 304 H~RAiLGLPi~~i~~~~P~AS-~vI~~~~~-~----~~~~f~~l~~AL~~-p~t~vRlFGKP~------~~~~RRmGVAL 370 (394)
T COG0027 304 HVRAILGLPIPEIRQISPAAS-AVILAQET-S----QAPTFDGLAEALGV-PDTQVRLFGKPE------ADGGRRLGVAL 370 (394)
T ss_pred HHHHHhCCCccceeeeccccc-ceeecccc-c----cCCchhhHHHHhcC-CCceEEEecCCc------ccCCceeeEEE
Confidence 999999985443334444433 34444321 1 12345667776553 333333333221 23457799999
Q ss_pred EecCCHHHHHHHHHHHhhccccC
Q 010065 475 AKGKDVEEAQDRAYLAVEEINWP 497 (519)
Q Consensus 475 ~~g~t~~ea~~~a~~~~~~i~~~ 497 (519)
++++|.++|+++|.++.+.|.+.
T Consensus 371 A~a~~Ve~Are~A~~aa~~i~v~ 393 (394)
T COG0027 371 ATAESVEEARERARKAASAIEVK 393 (394)
T ss_pred ecCccHHHHHHHHHHHHhheecC
Confidence 99999999999999999998875
No 47
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=1.1e-33 Score=289.24 Aligned_cols=403 Identities=21% Similarity=0.252 Sum_probs=285.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC--CC-CcCCCCCccccCCC-------CCCHHHHHHHHHHcCCcEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN--AG-ISNSGDATCIPDLD-------VLDGDAVISFCRKWSVGLV 151 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~--~~-~~~~~~~~~v~~~d-------~~d~~~l~~~~~~~~id~V 151 (519)
.+||||...|....-+.++.++. |++++.+.... .. ....++ +.+ .++ ..+.+.++..++....|+|
T Consensus 2 ~~kiLIanrGeia~ri~ra~~~l-Gi~tvav~s~~d~~~~~~~~ad-eav-~i~~~~~~~syl~i~~ii~~a~~~gadai 78 (449)
T COG0439 2 FKKILIANRGEIAVRIIRACREL-GIETVAVYSEADADALHVALAD-EAV-CIGPAPSADSYLNIDAIIAAAEETGADAI 78 (449)
T ss_pred CceEEEecCchhHHHHHHHHHHh-CCeEEEEeccccccchhhhhCc-eEE-EcCCccchhhhhhHHHHHHHHHhcCCceE
Confidence 46899999987666666666554 99998876431 11 111111 112 222 3458899999999999999
Q ss_pred EEC----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee--cCCHHHHHHHHHHhCCCE
Q 010065 152 VVG----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT--FTDPNAAKQYIQEEGAPI 225 (519)
Q Consensus 152 i~g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~--v~~~~~~~~~~~~~g~P~ 225 (519)
+|| +|+. .+++.+++.|+-++||++++++.+.||..+|++++++|+|+|++.. +.+.+++.++++++|||+
T Consensus 79 ~pGygflsen~---~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPV 155 (449)
T COG0439 79 HPGYGFLSENA---AFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPV 155 (449)
T ss_pred cccchhhhCCH---HHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCE
Confidence 995 5665 4677799999999999999999999999999999999999999762 566788999999999999
Q ss_pred EEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccc
Q 010065 226 VVKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRV 301 (519)
Q Consensus 226 VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~ 301 (519)
||||..|+||+|+++|++.+||.+++..+... ..|+ ++.+++|+||++ +.+.+.++.|+. .++.+......
T Consensus 156 ivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg--~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcs--- 230 (449)
T COG0439 156 IVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFG--NPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCS--- 230 (449)
T ss_pred EEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcC--CCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCC---
Confidence 99999999999999999999999999988754 2354 356999999999 689999999886 55555432211
Q ss_pred cCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchH
Q 010065 302 GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQ 381 (519)
Q Consensus 302 ~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~ 381 (519)
............|++.++++.+.++-+.+ .++.+..|.. |..++||+++.++ ++||+|+|||+++-..
T Consensus 231 ----iqrr~qkvieeapsp~~~~e~r~~i~~~a----~~a~~~~gY~--gagtvEfl~~~~~-~~yfiEmN~Rlqveh~- 298 (449)
T COG0439 231 ----IQRRHQKVIEEAPSPLLTEELREKIGEAA----VRAAKLIGYR--GAGTVEFLYDSNG-EFYFIEMNTRLQVEHP- 298 (449)
T ss_pred ----CcCCccceeeecCCCCCCHHHHHHHHHHH----HHHHHhcCCC--CCceEEEEEeCCC-CEEEEEEecccccCcc-
Confidence 01112234556788878888777777766 4676777755 9999999999744 6999999999977544
Q ss_pred HHHHHhCCCHHHHHHHHHhCCCCCC---CcccCCCcEEEEEEecCCCCCC-CCCCcccccchhhhccC--CCeEEEEeee
Q 010065 382 VLMVRLESDLAEVLLAACRGELTGV---TLNWSPGSAMVVVMASKGYPGS-YEKGSEIQNLEEAEQVA--PSVKIFHAGT 455 (519)
Q Consensus 382 ~~~~~~G~d~~~~~i~~~~g~~~~~---~~~~~~~~a~~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~--~~~~~~~~~~ 455 (519)
.....+|+|+.+.+++++.|+..+. +.... +.++...+..+. |.. + .+..|.-.....| +++++...
T Consensus 299 vte~vtGiDlv~~qi~ia~ge~l~~~q~~~~~~-g~aie~Ri~aed-p~~~f---~pspG~i~~~~~P~g~gvr~d~~-- 371 (449)
T COG0439 299 VTEMVTGIDLVKEQIRIAAGEPLSLKQEDIKFR-GHAIECRINAED-PLGNF---LPSPGKITRYAPPGGPGVRVDSG-- 371 (449)
T ss_pred ceehhhhhhHHHHHHHHHcCCCCCCCCCccccc-ceeeeceeeccC-CCCCc---CCCCCeeeeecCCCCCceEEEee--
Confidence 4555679999999999999973222 12222 556665555543 211 1 1111211111112 23333321
Q ss_pred eecCCCcE-EecCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccccc
Q 010065 456 ALDADGNF-IATGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQF 515 (519)
Q Consensus 456 ~~~~~g~~-~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~ 515 (519)
.. ...++ ....+.++.+++.|.++++|..+++++++.+.++|. +++.=+..+.|....+
T Consensus 372 ~~-~~~~i~~~yds~i~k~i~~~~~r~~ai~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~g~~ 436 (449)
T COG0439 372 VY-DGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDGIKTNIPLLQEILRDPDFLAGDL 436 (449)
T ss_pred cc-cCcccCcchhhheeEEEEecCChHHHHHHHHHHHHheEecCccCChHHHHHHhcChHhhcCCc
Confidence 11 11122 235688999999999999999999999999999993 3444444444444433
No 48
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=7.7e-34 Score=321.28 Aligned_cols=407 Identities=19% Similarity=0.214 Sum_probs=283.6
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC--C-cCCCCCcc-cc-------CCCCCCHHHHHHHHHHcCCcEEE
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG--I-SNSGDATC-IP-------DLDVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~--~-~~~~~~~~-v~-------~~d~~d~~~l~~~~~~~~id~Vi 152 (519)
||||-.-|.....+.+++++. |++++.+.++... . ...++... +. .-+..|.+.++++|+++++|+|+
T Consensus 1 ~~lianrgeia~ri~ra~~el-Gi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~ 79 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANEL-GIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIH 79 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEE
Confidence 477777775555567777766 9999998754221 1 11122111 10 11345789999999999999999
Q ss_pred EC----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEE
Q 010065 153 VG----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIV 226 (519)
Q Consensus 153 ~g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~V 226 (519)
|+ +|.. .+++.++..|++++|++++++.++.||..++++++++|||+|++. .+.+.+++.++++++|||+|
T Consensus 80 PGyGflsE~~---~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvI 156 (1143)
T TIGR01235 80 PGYGFLSENS---EFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVI 156 (1143)
T ss_pred ECCCccccCH---HHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEE
Confidence 96 3554 456779999999999999999999999999999999999999975 56788999999999999999
Q ss_pred EEeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEecccccccccc
Q 010065 227 VKADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVG 302 (519)
Q Consensus 227 vKP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~ 302 (519)
+||..|+||+|++++++.+|+.++++.+..+ ..|+ ++.++||+||+| +|++|.++.|+. +++.+...... ..
T Consensus 157 VKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg--~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcs--vq 232 (1143)
T TIGR01235 157 IKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFG--NDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCS--VQ 232 (1143)
T ss_pred EEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcC--CCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEecccc--cc
Confidence 9999999999999999999999999887532 1232 368999999997 899999998653 34433211000 00
Q ss_pred CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHH
Q 010065 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQV 382 (519)
Q Consensus 303 ~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~ 382 (519)
.... ......|+..++++..+++.+.+. ++++++|+. |+.+|||+++++| ++||||||||++.+.. .
T Consensus 233 rr~q-----k~ie~aPa~~L~~e~r~~I~~~A~----kla~aLgy~--G~gtVEFlvd~dg-~~yfIEVNPRiqveh~-v 299 (1143)
T TIGR01235 233 RRHQ-----KVVEVAPAPYLSREVRDEIAEYAV----KLAKAVNYI--NAGTVEFLVDNDG-KFYFIEVNPRIQVEHT-V 299 (1143)
T ss_pred ccCc-----eEEEEeCCCCCCHHHHHHHHHHHH----HHHHHcCCc--ceEEEEEEEeCCC-cEEEEEeecCCCcchh-H
Confidence 0000 112356776689988888888764 577888866 9999999999876 7999999999987544 3
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCC------C--CcccCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEEE
Q 010065 383 LMVRLESDLAEVLLAACRGELTG------V--TLNWSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIFH 452 (519)
Q Consensus 383 ~~~~~G~d~~~~~i~~~~g~~~~------~--~~~~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~ 452 (519)
....+|+|+.+..++++.|.... + ......++++...+..++-... +..| .|..+... ..+++++-.
T Consensus 300 Te~vtGiDlv~~qi~iA~G~~L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f~p~~g-~i~~~~~~--~g~gvr~d~ 376 (1143)
T TIGR01235 300 TEEITGIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTG-RIEAYRSA--GGFGIRLDG 376 (1143)
T ss_pred HHHHhCcHHHHHHHHHHcCCCCCccccCCCcccccCCCcEEEEEEEeeecCCCCcccCCc-EeeEEecC--CCCCeEecc
Confidence 33457999999999999998433 1 1112347888887776541111 1111 12211110 001222110
Q ss_pred eeeeecCCCc-EEe-cCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeecccccccccccccccc
Q 010065 453 AGTALDADGN-FIA-TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 453 ~~~~~~~~g~-~~~-~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~ 517 (519)
+.. ..|. +.. .++-++.++++|.|+++|.+++.++++..++.| .|.++=+.++.|...++-|
T Consensus 377 -~~~--~~g~~v~~~yds~~~k~~~~~~~~~~a~~~~~~al~e~~i~gv~tn~~~l~~~l~~~~f~~~~~~t 445 (1143)
T TIGR01235 377 -GNS--YAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFRIRGVKTNIPFLENVLGHPKFLDGSYDT 445 (1143)
T ss_pred -ccc--CCCCCcCCcccchhhhheeeCCCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhcCHhhcCCCccc
Confidence 000 0122 222 345567899999999999999999999999999 2444444556665555444
No 49
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=9.3e-34 Score=279.51 Aligned_cols=362 Identities=23% Similarity=0.233 Sum_probs=267.4
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHcCCcEEEE--CCChhhHHHH--H--HHH
Q 010065 95 HALCYALKRSHSCDAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKWSVGLVVV--GPEAPLVSGL--A--NKL 167 (519)
Q Consensus 95 ~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~--g~E~~~~~~~--a--~~l 167 (519)
.+.+++|+++ |+++++++++....... ..++.+ ++.+...+.+..+++++++|+++| ++++++...+ . ..|
T Consensus 19 ~qac~aLkee-g~~vvlvnsnpAti~td~e~AD~~-y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l 96 (400)
T COG0458 19 TQACKALKEE-GYGVVLVNSNPATIMTDPELADKV-YIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVL 96 (400)
T ss_pred HHHHHHHHhc-CCeEEEEcCCCccccCCchhccee-eeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcch
Confidence 4568888777 99999986543222211 123333 566777899999999999999999 5676663222 1 235
Q ss_pred HHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHH
Q 010065 168 VKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEA 247 (519)
Q Consensus 168 e~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el 247 (519)
+++|++++|++++++.++.||.+++++|+++|+|+| ....++.+++.+..+.+|||+||||+.+.||.|..+++|.+||
T Consensus 97 ~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel 175 (400)
T COG0458 97 EKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEEL 175 (400)
T ss_pred hhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccccccHHHHhhhHhhcCCCEEEecCcCCCCCceeEEeCHHHH
Confidence 677999999999999999999999999999999999 6788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccCCCCCCCCCCceEEecCCCCCHH
Q 010065 248 YEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKE 325 (519)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~ 325 (519)
.+.....+.. .+..++++||+|.| +|+..++++|++ +++..+ ... .++ ..+.|++.+....|++++++.
T Consensus 176 ~~~~~~~l~~----s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc-~me---n~d-p~gvhtgdsi~vapaqtl~d~ 246 (400)
T COG0458 176 EEIIEEGLRA----SPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVC-NME---NLD-PMGVHTGDSITVAPAQTLTDK 246 (400)
T ss_pred HHHHHhcccc----CccccceeeeeecCceEEEEEEEEeCCCCEEEEE-eCC---ccc-cccccccceeeeccccccccH
Confidence 9999887753 34579999999999 999999999875 343332 222 122 457889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCCC
Q 010065 326 LQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTG 405 (519)
Q Consensus 326 ~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~ 405 (519)
..+.++..+. ++++.+|+. |.+++||.++++++++|+||+|||++.+.. .-..++|..+..+..+++.|-..+
T Consensus 247 eyq~~r~~~~----~iir~igi~--G~~niQ~av~~~~~~~~viEvNpRvSrssa-LaskAtgypia~vaakla~g~~l~ 319 (400)
T COG0458 247 EYQMLRDAAI----KVIREIGIE--GGCNIQFAVDPGGGELYVIEINPRVSRSSA-LASKATGYPIAKVAAKLAVGYTLD 319 (400)
T ss_pred HHHHHHHHHH----HHHHHhccc--CCCceeEEEcCCCceEEEEEecCCcCcchh-hhhhccCChHHHHHHHhhcccCch
Confidence 8888887664 577888988 999999999998779999999999988665 333456888888888888887433
Q ss_pred CCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHH
Q 010065 406 VTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQD 485 (519)
Q Consensus 406 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~ 485 (519)
...+.-.+..... ..|. .. -.+..+.. .....|.. ...++.+....+|.|++.|+|++||++
T Consensus 320 Ei~n~it~~t~a~--fePs---ld---yvv~k~pr-----~~f~kf~~-----~~~~l~~~mks~gevm~igr~f~eal~ 381 (400)
T COG0458 320 EIRNDITGRTPAS--FEPS---LD---YVVTKIPR-----FDFEKFPG-----ADRRLGTQMKSVGEVMAIGRTFEEALQ 381 (400)
T ss_pred hhcCccccccccc--cCCc---cc---eeeeecCC-----CCcccccc-----cccceeeeeeccceEEEecchHHHHHH
Confidence 2221111111111 1111 00 01111111 01112211 123456677788999999999999999
Q ss_pred HHHHHhhc
Q 010065 486 RAYLAVEE 493 (519)
Q Consensus 486 ~a~~~~~~ 493 (519)
+|.+.++.
T Consensus 382 ka~~~l~~ 389 (400)
T COG0458 382 KALRSLEI 389 (400)
T ss_pred HHHHhhcc
Confidence 99998763
No 50
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=3.1e-33 Score=283.44 Aligned_cols=299 Identities=20% Similarity=0.225 Sum_probs=218.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcC-CCcEEEEecCC--CCCcCCCCCccccCC-CCCCHHHHHHHHHHcCCcEEEECCCh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSH-SCDAVFCAPGN--AGISNSGDATCIPDL-DVLDGDAVISFCRKWSVGLVVVGPEA 157 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~-g~~~v~~~~~~--~~~~~~~~~~~v~~~-d~~d~~~l~~~~~~~~id~Vi~g~E~ 157 (519)
++||||+|+|... +++++|++.. |++++.++.+. ++....+....++.. +....+.++++++++++|+|+|+.|.
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~d~~~~~p~~~~~~~~~~l~~~~~~~~id~ii~~~d~ 79 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADISELAPALYFADKFYVVPKVTDPNYIDRLLDICKKEKIDLLIPLIDP 79 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEECCCCcchhhHhccCcEecCCCCChhHHHHHHHHHHHhCCCEEEECCcH
Confidence 4799999998654 7899998874 58888876542 222211111111111 22236889999999999999998765
Q ss_pred h--hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHH--HHHHhCCCEEEEeCCCC
Q 010065 158 P--LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQ--YIQEEGAPIVVKADGLA 233 (519)
Q Consensus 158 ~--~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~--~~~~~g~P~VvKP~~g~ 233 (519)
. .+...++.++..|+++++++++++.+++||..|+++|+++|+|+|++..+.+.+++.+ +.+.++||+|+||.++.
T Consensus 80 ~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~viKP~~g~ 159 (326)
T PRK12767 80 ELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGELQFPLFVKPRDGS 159 (326)
T ss_pred HHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCHHHHHhhhhcccCCCCEEEEeCCCC
Confidence 4 3445667788889988899999999999999999999999999999999999988877 45678999999999999
Q ss_pred CCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEe-CCeeEEeccccccccccCCCCCCCCCC
Q 010065 234 AGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVD-GENAIPLESAQDHKRVGDGDTGPNTGG 312 (519)
Q Consensus 234 gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~d-g~~~~~~~~~~~~~~~~~~~~~~~~g~ 312 (519)
+|.|+.+++|.+|+.++++.. ..++|||||+|+|++++++++ ++.+..+...... ... .|.
T Consensus 160 ~s~gv~~v~~~~el~~~~~~~----------~~~lvqeyi~G~e~~v~~~~~~~G~~~~~~~~~~~-~~~-------~g~ 221 (326)
T PRK12767 160 ASIGVFKVNDKEELEFLLEYV----------PNLIIQEFIEGQEYTVDVLCDLNGEVISIVPRKRI-EVR-------AGE 221 (326)
T ss_pred CccCeEEeCCHHHHHHHHHhC----------CCeEEEeccCCceEEEEEEEcCCCCEEEEEEeeee-eec-------CCc
Confidence 999999999999999888754 489999999999999999986 4444433222211 111 111
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHH
Q 010065 313 MGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLA 392 (519)
Q Consensus 313 ~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~ 392 (519)
....... .++ ++.+.+ .++++++|+ +|++++||++++++ +|+||+|||++++.. +...+|+|+.
T Consensus 222 ~~~~~~~--~~~----~i~~~~----~~i~~~lg~--~G~~~vd~~~~~g~--~~viEiNpR~~g~~~--~~~~~G~n~~ 285 (326)
T PRK12767 222 TSKGVTV--KDP----ELFKLA----ERLAEALGA--RGPLNIQCFVTDGE--PYLFEINPRFGGGYP--LSYMAGANEP 285 (326)
T ss_pred eeEEEEc--CCH----HHHHHH----HHHHHhcCC--eeeEEEEEEEECCe--EEEEEEeCCCCCcch--hhHhhCCCHH
Confidence 1111111 122 344433 345678886 49999999999854 999999999987653 3345799999
Q ss_pred HHHHHHHhCCCCCCCc-ccCCCcE
Q 010065 393 EVLLAACRGELTGVTL-NWSPGSA 415 (519)
Q Consensus 393 ~~~i~~~~g~~~~~~~-~~~~~~a 415 (519)
+++++.++|....+.+ .++.+..
T Consensus 286 ~~~~~~~~g~~~~~~~~~~~~~~~ 309 (326)
T PRK12767 286 DWIIRNLLGGENEPIIGEYKEGLY 309 (326)
T ss_pred HHHHHHHcCCCCCcchhccccCeE
Confidence 9999999998544443 4444433
No 51
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=4.2e-31 Score=266.09 Aligned_cols=384 Identities=24% Similarity=0.285 Sum_probs=283.6
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCC---CCcCCCC-Ccccc----CCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNA---GISNSGD-ATCIP----DLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~---~~~~~~~-~~~v~----~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
.||||-.-|-....+++..++. |+.++.+.++.+ .....++ +..+- .-++.+.+.|++.+++...++|-||
T Consensus 3 ~KiLIANRGEIAcRVIRtar~l-Gi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHPG 81 (645)
T COG4770 3 SKILIANRGEIACRVIRTARDL-GIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPG 81 (645)
T ss_pred ceEEEeccchhhHHHHHHHHHc-CCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccCC
Confidence 4788888775444566666655 999998865421 1122221 11111 1234568999999999999999995
Q ss_pred ----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee--cCCHHHHHHHHHHhCCCEEEE
Q 010065 155 ----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT--FTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 155 ----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~--v~~~~~~~~~~~~~g~P~VvK 228 (519)
+|.+ .+++.++..|+-++||++.+++..-||...|.++.++|+|+.|.+. +.+.+++..+++++|||+++|
T Consensus 82 YGFLSENa---~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIK 158 (645)
T COG4770 82 YGFLSENA---DFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIK 158 (645)
T ss_pred ccccccCH---HHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEE
Confidence 6876 5678899999999999999999999999999999999999977654 667888999999999999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccc-----cccc
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESA-----QDHK 299 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~-----~~~~ 299 (519)
++.|+|++|++++.+.+|+.++++.+..+ ..|+ ++.++||+|+.- +.+.+.++.|+ ++++.+.+. +.|+
T Consensus 159 AsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFG--ddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQ 236 (645)
T COG4770 159 ASAGGGGKGMRVVETPEEFAEALESARREAKASFG--DDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQ 236 (645)
T ss_pred eccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcC--CceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcc
Confidence 99999999999999999999999988754 4564 489999999998 99999999875 366666542 3444
Q ss_pred cccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCc
Q 010065 300 RVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPE 379 (519)
Q Consensus 300 ~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~ 379 (519)
++.+ -.|++.|++++++.|-+.+. ++.++.| |.|.-.|||+++.++ .+||+|+|+|+.- .
T Consensus 237 KVIE------------EAPaP~l~~~~R~amg~aAv----~~a~avg--Y~gAGTVEFivd~~~-~f~FlEMNTRLQV-E 296 (645)
T COG4770 237 KVIE------------EAPAPFLTEETREAMGEAAV----AAAKAVG--YVGAGTVEFIVDADG-NFYFLEMNTRLQV-E 296 (645)
T ss_pred hhhh------------cCCCCCCCHHHHHHHHHHHH----HHHHhcC--CCcCceEEEEEcCCC-cEEEEEeecceec-c
Confidence 4433 35888899999999999875 4556767 559999999999988 7999999999955 3
Q ss_pred hHHHHHHhCCCHHHHHHHHHhCCCCCCC--cccCCCcEEEEEEecCC-CCCCCCCCcccccchhhhccCCC--eEEEEee
Q 010065 380 CQVLMVRLESDLAEVLLAACRGELTGVT--LNWSPGSAMVVVMASKG-YPGSYEKGSEIQNLEEAEQVAPS--VKIFHAG 454 (519)
Q Consensus 380 ~~~~~~~~G~d~~~~~i~~~~g~~~~~~--~~~~~~~a~~~~l~~~~-~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 454 (519)
+......+|+||.++.++++.|+..+.. ...-+++++...+..++ +-+.....-.+..+.. |.+ +++ ..|
T Consensus 297 HPVTE~iTGiDLVewqiRVA~GekL~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~----P~~~~vRv-DsG 371 (645)
T COG4770 297 HPVTELITGIDLVEWQIRVASGEKLPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRP----PAGPGVRV-DSG 371 (645)
T ss_pred ccchhhhhhhHHHHHHHHHhcCCcCCcccccccccceeEEEEEeccCcccCccCCCceeEeecC----CCCCceec-ccC
Confidence 3355556799999999999999843321 12234889988877764 1122211112222211 111 111 111
Q ss_pred eeecCCCcEEec-CCeEEEEEEecCCHHHHHHHHHHHhhccccCCe
Q 010065 455 TALDADGNFIAT-GGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG 499 (519)
Q Consensus 455 ~~~~~~g~~~~~-~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~ 499 (519)
.. ..+.+... +..+..++++|.|+++|++++.++++...++|+
T Consensus 372 V~--~G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~~~v~Gi 415 (645)
T COG4770 372 VR--EGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVEGI 415 (645)
T ss_pred cc--cCCccccccchHHHHHhhcCCCHHHHHHHHHHHHHhhEecCc
Confidence 11 12233333 344677899999999999999999999999983
No 52
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.8e-30 Score=249.18 Aligned_cols=356 Identities=20% Similarity=0.223 Sum_probs=256.2
Q ss_pred ccEEEEEeCChhHHHHHHHHHhc---CCCcEEEEecCCC-CCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCCh
Q 010065 82 RVVVLVIGGGGREHALCYALKRS---HSCDAVFCAPGNA-GISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEA 157 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~---~g~~~v~~~~~~~-~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~ 157 (519)
+++|.|||+|+ |.|++..+ .|+++++++|+.. .....++ ..+ ..+.+|.+++.+++.+. |+|-...|.
T Consensus 1 ~~tvgIlGGGQ----LgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~-~~i-~~~~dD~~al~ela~~~--DViT~EfE~ 72 (375)
T COG0026 1 MKTVGILGGGQ----LGRMMALAAARLGIKVIVLDPDADAPAAQVAD-RVI-VAAYDDPEALRELAAKC--DVITYEFEN 72 (375)
T ss_pred CCeEEEEcCcH----HHHHHHHHHHhcCCEEEEecCCCCCchhhccc-cee-ecCCCCHHHHHHHHhhC--CEEEEeecc
Confidence 36899999996 55555443 3999999987733 3333322 223 44666889999998764 556656666
Q ss_pred hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCC-CCCCC
Q 010065 158 PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADG-LAAGK 236 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~-g~gs~ 236 (519)
.-...+.. ++.. .++. |++++..+..||...|++|+++|+|+|+|..+.+.+++..+++++|+|+|+|-.. |..|+
T Consensus 73 V~~~aL~~-l~~~-~~v~-p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~p~VlKtr~gGYDGk 149 (375)
T COG0026 73 VPAEALEK-LAAS-VKVF-PSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRRGGYDGK 149 (375)
T ss_pred CCHHHHHH-HHhh-cCcC-CCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCCceEEEeccccccCC
Confidence 55544433 4433 4554 9999999999999999999999999999999999999999999999999999964 56899
Q ss_pred cEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEE--eCCeeEEecc--ccccccccCCCCCCCCC
Q 010065 237 GVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALV--DGENAIPLES--AQDHKRVGDGDTGPNTG 311 (519)
Q Consensus 237 GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~--dg~~~~~~~~--~~~~~~~~~~~~~~~~g 311 (519)
|.+++++.+++........ .....++|+||+- +|+|+-+.+ ||+ +..++. +.....++.
T Consensus 150 GQ~~i~~~~~~~~~~~~~~-------~~~~~vlE~fV~F~~EiSvi~aR~~~G~-~~~yP~~eN~h~~gIl~-------- 213 (375)
T COG0026 150 GQWRIRSDADLELRAAGLA-------EGGVPVLEEFVPFEREISVIVARSNDGE-VAFYPVAENVHRNGILR-------- 213 (375)
T ss_pred CeEEeeCcccchhhHhhhh-------ccCceeEEeecccceEEEEEEEEcCCCC-EEEecccceeeecCEEE--------
Confidence 9999999998887555542 1234499999997 999999997 444 333433 333233332
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCH
Q 010065 312 GMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDL 391 (519)
Q Consensus 312 ~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~ 391 (519)
.++.|+. +++...+..++++. +++..++ |.|++.||||++.+| +++++|+.|||..+.+|++. .+.++-
T Consensus 214 --~siaPa~-i~~~~~~~A~~~a~----~i~~~L~--yvGVl~vE~Fv~~dg-~llvNEiAPRvHNSGH~T~~-gc~~SQ 282 (375)
T COG0026 214 --TSIAPAR-IPDDLQAQAEEMAK----KIAEELD--YVGVLAVEFFVTPDG-ELLVNEIAPRVHNSGHWTID-GCETSQ 282 (375)
T ss_pred --EEEecCc-CCHHHHHHHHHHHH----HHHHHcC--ceEEEEEEEEEECCC-cEEEeeccCCCCCccccchh-hccccH
Confidence 3578997 88887777777664 5556655 669999999999997 79999999999999997765 356777
Q ss_pred HHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEE
Q 010065 392 AEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVL 471 (519)
Q Consensus 392 ~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg 471 (519)
++.+++.++|.+... +.......|.++++....+. ...++. ..++.+++++|... ...+..+|
T Consensus 283 FEqHlRAv~glPLg~-~~~~~p~vMvNlLG~~~~~~---------~~~~~l-~~p~~~lH~YGK~e------~R~gRKmG 345 (375)
T COG0026 283 FEQHLRAVLGLPLGS-TTLLSPSVMVNLLGDDVPPD---------DVKAVL-ALPGAHLHWYGKAE------ARPGRKMG 345 (375)
T ss_pred HHHHHHHHhCCCCCC-ccccCceEEEEecCCCCchh---------hhHHHH-hCCCCEEEEecCcc------CCCCCeee
Confidence 888888888874333 22233467777777532111 122222 25678888887632 12345589
Q ss_pred EEEEecCCHHHHHHHHHHHhh
Q 010065 472 GVTAKGKDVEEAQDRAYLAVE 492 (519)
Q Consensus 472 ~vi~~g~t~~ea~~~a~~~~~ 492 (519)
||...+.|.+++.+.+...-.
T Consensus 346 Hvn~~~~~~~~~~~~~~~l~~ 366 (375)
T COG0026 346 HVNVLGSDSDELEQLAALLPA 366 (375)
T ss_pred eEEeecCCHHHHHHHHHhhhh
Confidence 999999997777766555543
No 53
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=100.00 E-value=6.4e-32 Score=246.20 Aligned_cols=191 Identities=60% Similarity=1.023 Sum_probs=173.7
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCE-EEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCC
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPI-VVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGC 265 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~-VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~ 265 (519)
+|..+|++++++|||++++..+++.+++.+++++.++|+ ||||...++++||.++.+.+|..+++++++....|+..+.
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~ 81 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGS 81 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGS
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCC
Confidence 799999999999999999999999999999999999999 9999999999999999999999999999998777877788
Q ss_pred cEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 010065 266 RVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE 345 (519)
Q Consensus 266 ~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~ 345 (519)
.++||||+.|.|+|+.++.||+.+.+++..++|++.++++.+|++|+|+.++|.+.++++..+.+.+.+++++++++++.
T Consensus 82 ~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt~~~l~~e 161 (194)
T PF01071_consen 82 KVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPTLKGLKKE 161 (194)
T ss_dssp SEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHHHHHHHHT
T ss_pred cEEEEeccCCeEEEEEEEEcCCeEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCc
Q 010065 346 GCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPE 379 (519)
Q Consensus 346 g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~ 379 (519)
|+.|.|+..+.+|++++| |++||.|.|+|.+.
T Consensus 162 g~~y~GvLy~glMlt~~G--p~vlEfN~RfGDPE 193 (194)
T PF01071_consen 162 GIPYRGVLYAGLMLTEDG--PKVLEFNVRFGDPE 193 (194)
T ss_dssp T---EEEEEEEEEEETTE--EEEEEEESSGSTTC
T ss_pred CCCcceeeeeeeEEeCCC--cEEEEEeCCCCCCC
Confidence 999999999999999998 99999999999864
No 54
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.98 E-value=2.5e-33 Score=292.83 Aligned_cols=436 Identities=19% Similarity=0.186 Sum_probs=322.4
Q ss_pred ccccccccccccC-----CCceeccCCceeEEeccCCCccceeEEEeeccCCCC--CcccccCCC----------CCCCc
Q 010065 20 TKCFQFQKPFASS-----NNLRFSVGPNFSISFNPQGSKSSFFSTVKCLAQKSQ--PSVSVNAPT----------NAGQR 82 (519)
Q Consensus 20 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GG~s~e--~~vS~~s~~----------~~~~~ 82 (519)
|-|-||+..|+|. +||.|+.+|+||+||||+...+.+.-..+|+-.-.. +.-+...+. ...+.
T Consensus 298 tLp~gWk~lFvN~NDgSNEGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~kst~tAs~~~t~~~~~~~~~~~ 377 (1435)
T KOG0370|consen 298 TLPAGWKPLFVNANDGSNEGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKKSKSTPTASAFITEPAKAAPRVEV 377 (1435)
T ss_pred cccCCCchheeecccCCCceEecCCCCceeeecCCcCCCCCcchHHHHHHHHHHHHHHhcCCcccccccccccccccccc
Confidence 5678999999987 699999999999999999998776666666542111 111111110 11245
Q ss_pred cEEEEEeCChhH-----------HHHHHHHHhcCCCcEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHcCCcE
Q 010065 83 VVVLVIGGGGRE-----------HALCYALKRSHSCDAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKWSVGL 150 (519)
Q Consensus 83 ~~vliiG~g~~~-----------~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id~ 150 (519)
++|+|+|+||.. .+.+++|+++ |+.+++++|+-....+. ..++.+ ++-+..++.+....+.+.+|+
T Consensus 378 ~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe-~i~TiLiNPNIAtvQts~~lAD~v-yflpvT~~~vt~vi~~erPd~ 455 (1435)
T KOG0370|consen 378 KKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEE-NIFTILINPNIATVQTSKGLADKV-YFLPVTPEYVTKVIKAERPDG 455 (1435)
T ss_pred cEEEEEccCCccccccceeeeeHHHHHHhhhhc-ccEEEEECCcccccccccccceEE-EEeecCHHHHHHHHHhhCCCe
Confidence 899999999642 4457788777 99999997762222211 124444 455667888889999999999
Q ss_pred EEE--CCChhhHHHH----HHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC
Q 010065 151 VVV--GPEAPLVSGL----ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP 224 (519)
Q Consensus 151 Vi~--g~E~~~~~~~----a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P 224 (519)
++. |+...+..++ +..+++++++++|.+.++.....|+.++.+.+++.+.+..++...++.+++.++++.++||
T Consensus 456 il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~sie~al~aae~l~yp 535 (1435)
T KOG0370|consen 456 ILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVSTIEEALEAAERLGYP 535 (1435)
T ss_pred EEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccchhhHhHHHHHHHHHHhcCcH
Confidence 998 4555543332 2358889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCC-eeEEecccccccccc
Q 010065 225 IVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVG 302 (519)
Q Consensus 225 ~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~ 302 (519)
+++.....-|+.|-.+++|++||.+....+++ ...+++||+-+.| +|+..++++|.. +++.++ .++ .+
T Consensus 536 vivRaayalgglgSgfa~n~eeL~~l~~~a~a------~s~QilvekSlkGwkevEyevvrDa~~nciTvc-nme---n~ 605 (1435)
T KOG0370|consen 536 VIVRAAYALGGLGSGFANNEEELQDLAAQALA------LSPQILVEKSLKGWKEVEYEVVRDAYDNCITVC-NME---NF 605 (1435)
T ss_pred HHHHHHHHhcCccccccccHHHHHHHHhhccc------cCceeeehhhhccccceEEEEEeccccchhhhc-CCc---cc
Confidence 99999999999999999999999999888875 5689999999999 999999998753 344332 222 34
Q ss_pred CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHH
Q 010065 303 DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQV 382 (519)
Q Consensus 303 ~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~ 382 (519)
| ..+.|+|++..+.|+.+++++..+.++..++ ++.+.+|.- |-+++++.+++...++++||+|+|...+.. .
T Consensus 606 D-plgihtGdSiVvapsqtlsd~ey~mlrttai----kVirhlgvv--GEcniQyaL~p~s~~y~IiEVNarLSrssa-L 677 (1435)
T KOG0370|consen 606 D-PLGIHTGDSIVVAPSQTLSDEEYQMLRTTAI----KVIRHLGVV--GECNIQYALNPYSLEYRIIEVNARLSRSSA-L 677 (1435)
T ss_pred C-cceeeccceEEEeeccccChHHHHHHHhcch----hheeccCCc--ccccceeeecccceeEEEEEEEeEEeehhh-h
Confidence 4 5689999999999999999999999998875 577788866 999999999998878999999999966443 2
Q ss_pred HHHHhCCCHHHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCc
Q 010065 383 LMVRLESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGN 462 (519)
Q Consensus 383 ~~~~~G~d~~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 462 (519)
...++|..+.....++++|.+.+.-++.-.+.....+-..-+ +.. .+|..++. .-|.. ...+
T Consensus 678 ASkaTgypLAy~aAKlalg~~lpe~~n~Vt~~T~AcFEpslD----Y~v-~KiprWDl--------~kf~~-----vs~~ 739 (1435)
T KOG0370|consen 678 ASKATGYPLAYTAAKLALGIPLPELKNSVTKTTTACFEPSLD----YCV-VKIPRWDL--------SKFQR-----VSTE 739 (1435)
T ss_pred hccCccCcHHHHHHHHhcCcccccCCcccccceecccCcchh----hee-eecccccH--------HHHHH-----HHHh
Confidence 223459999999999999984322222222333333211111 110 11222221 01110 1123
Q ss_pred EEecCCeEEEEEEecCCHHHHHHHHHHHhhc
Q 010065 463 FIATGGRVLGVTAKGKDVEEAQDRAYLAVEE 493 (519)
Q Consensus 463 ~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~ 493 (519)
+.++...+|.|++.|.+.|||.++|.+..+.
T Consensus 740 igssmKSvgEvm~iGR~feea~QKalr~vd~ 770 (1435)
T KOG0370|consen 740 IGSSMKSVGEVMAIGRTFEEAFQKALRMVDP 770 (1435)
T ss_pred hchhhhhhhhhhhhhhhHHHHHHHHHhhcCh
Confidence 4466788999999999999999999888764
No 55
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.98 E-value=3.6e-30 Score=264.57 Aligned_cols=251 Identities=14% Similarity=0.048 Sum_probs=182.8
Q ss_pred HHHHHHHHHcCCcEEEE-CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeec--CCHHH
Q 010065 137 DAVISFCRKWSVGLVVV-GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTF--TDPNA 213 (519)
Q Consensus 137 ~~l~~~~~~~~id~Vi~-g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v--~~~~~ 213 (519)
..++++++.......+. -.||+.+|++ |+.+|+|++|++++++.+++||..+|++++++|||+|++..+ .+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~fl~~DG~iQ~l---LE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~ee 170 (493)
T PRK06524 94 PETLEFIKRRGPGGKACFVMFDEETEAL---ARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDE 170 (493)
T ss_pred HHHHHHHHhhCCCCceEEecCCHHHHHH---HHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHH
Confidence 45666666655433332 4789977666 999999999999999999999999999999999999999873 56666
Q ss_pred HHHHHHH--hCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCC-eeE
Q 010065 214 AKQYIQE--EGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE-NAI 290 (519)
Q Consensus 214 ~~~~~~~--~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~-~~~ 290 (519)
+.+.++. +|||+||||+.|+||+|+++|++.+|+.+++.+++. .+.++||+||+|+|++|+++++++ .+.
T Consensus 171 l~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~-------~~~viVEe~I~GrEitVev~vd~dG~Vv 243 (493)
T PRK06524 171 LSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG-------QPEIKVMKRIRNVEVCIEACVTRHGTVI 243 (493)
T ss_pred HHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC-------CCCEEEEeccCcEEEEEEEEEeCCCCEE
Confidence 6666655 999999999999999999999999999999888752 367999999999999999997543 233
Q ss_pred Eec--cccccccccCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEEcCCCce
Q 010065 291 PLE--SAQDHKRVGDGDTGPNTGGM-GAYSPAPVLTKELQSVVMESIILPTVKGMSAE-GCKFVGVLYAGLMIEKKSGLP 366 (519)
Q Consensus 291 ~~~--~~~~~~~~~~~~~~~~~g~~-~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~~~g~~~ 366 (519)
... ....+..+.+ |..|.. ..++|+. +++++.+++++.|. +++.++ ++++.|+++|||+++++++++
T Consensus 244 ~~~~~e~vg~~Ei~~----yr~G~~~~~i~PA~-L~~ei~eeIqeiA~----ka~~aL~~lG~~Gv~rVDFfvd~ddgev 314 (493)
T PRK06524 244 GPAMTSLVGYPELTP----YRGGWCGNDIWPGA-LPPAQTRKAREMVR----KLGDVLSREGYRGYFEVDLLHDLDADEL 314 (493)
T ss_pred eccccccccceEEEE----ccCCeEEEEEccCC-CCHHHHHHHHHHHH----HHHHHhhcCCCEEEEEEEEEEECCCCeE
Confidence 211 1111111211 111211 2467988 99999999888875 566666 223449999999999642379
Q ss_pred EEEEEeCCCCCCchHHHH-HHh--CCCHHHHHHHHHhCCCCCC
Q 010065 367 KLIEYNVRFGDPECQVLM-VRL--ESDLAEVLLAACRGELTGV 406 (519)
Q Consensus 367 ~viEiN~R~G~~~~~~~~-~~~--G~d~~~~~i~~~~g~~~~~ 406 (519)
||+||||||+++...+.. ..+ +.++..++++..+|.+.+.
T Consensus 315 YfnEINPR~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~~ 357 (493)
T PRK06524 315 YLGEVNPRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYEL 357 (493)
T ss_pred EEEEEeCCcccccccchhhhccCCChhHHHHHHHHHhCCCcee
Confidence 999999999774432333 223 4455555666777875443
No 56
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=99.98 E-value=1.3e-29 Score=251.22 Aligned_cols=387 Identities=21% Similarity=0.274 Sum_probs=275.5
Q ss_pred HHHHHHhcCCCcEEEEecCCC---CCcCCCC-Ccccc----CCCCCCHHHHHHHHHHcCCcEEEEC----CChhhHHHHH
Q 010065 97 LCYALKRSHSCDAVFCAPGNA---GISNSGD-ATCIP----DLDVLDGDAVISFCRKWSVGLVVVG----PEAPLVSGLA 164 (519)
Q Consensus 97 l~~~l~~~~g~~~v~~~~~~~---~~~~~~~-~~~v~----~~d~~d~~~l~~~~~~~~id~Vi~g----~E~~~~~~~a 164 (519)
+.+.+++. |++++.+.++-+ -....++ +-.+- ..+..+.+.+++.+++.+..+|.|| +|.. .++
T Consensus 13 VirTakkm-GI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGFLSEn~---~Fa 88 (670)
T KOG0238|consen 13 VIRTAKKM-GIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGFLSENA---EFA 88 (670)
T ss_pred hhhHHHHh-CCeEEEEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccccccch---HHH
Confidence 45555554 999988864411 1111111 11110 1233457899999999999999995 6776 467
Q ss_pred HHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeC
Q 010065 165 NKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAM 242 (519)
Q Consensus 165 ~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~ 242 (519)
+.++..|+.++||++.+++-..||...|++++++|+|+.+.. ...+.+++.+.++++|||+++|+..|+|++|++++.
T Consensus 89 e~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~ 168 (670)
T KOG0238|consen 89 ELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAW 168 (670)
T ss_pred HHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCCCcceEeec
Confidence 789999999999999999999999999999999999997753 356788899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccc-----cccccccCCCCCCCCCCc
Q 010065 243 TLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESA-----QDHKRVGDGDTGPNTGGM 313 (519)
Q Consensus 243 ~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~-----~~~~~~~~~~~~~~~g~~ 313 (519)
+++|+.+.++.+..+ ..|+ ++.+++|+||+. +.+.+.++.|+ ++.+.+.+. ++++.+.+
T Consensus 169 ~~~ef~~~~~~ak~Ea~~sFG--dd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiE---------- 236 (670)
T KOG0238|consen 169 SEEEFEEGLESAKQEAAKSFG--DDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIE---------- 236 (670)
T ss_pred ChHHHHHHHHHHHHHHHhhcC--cchhhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhh----------
Confidence 999999999887754 3464 488999999998 99999999976 356666542 23333332
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHH
Q 010065 314 GAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAE 393 (519)
Q Consensus 314 ~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~ 393 (519)
-.|++.++++.+..+-+.|+ ++.++.|+. |.-.|||++|..+ ++||+|+|+|+.- .+......+|.|+.+
T Consensus 237 --EaPap~l~~e~R~~lgeaAv----~aa~avgY~--~aGTVEFi~D~~~-~FyFmEmNTRLQV-EHPvTEmItg~DLVe 306 (670)
T KOG0238|consen 237 --EAPAPNLPEETRRALGEAAV----RAAKAVGYV--GAGTVEFIVDSKD-NFYFMEMNTRLQV-EHPVTEMITGTDLVE 306 (670)
T ss_pred --cCCCCCCCHHHHHHHHHHHH----HHHHhhCCc--ccceEEEEEcCCC-cEEEEEeeceeee-cccchhhccchHHHH
Confidence 35888899999999999875 466777754 9999999999976 8999999999954 232444457999999
Q ss_pred HHHHHHhCCCCCCC---cccCCCcEEEEEEecCCCCCCCC-CCcccccchhhhccCCCeEEEEeeeeecCCCcEE--ecC
Q 010065 394 VLLAACRGELTGVT---LNWSPGSAMVVVMASKGYPGSYE-KGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFI--ATG 467 (519)
Q Consensus 394 ~~i~~~~g~~~~~~---~~~~~~~a~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~ 467 (519)
+.++++.|...+.. ... +++++...+..++-.+.+. ..-++...... ...+.+++- .+. ..|.-. ..+
T Consensus 307 wqiRvA~ge~lp~~q~ei~l-~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p-~~~~~vRvd-tgV---~~g~~vs~~YD 380 (670)
T KOG0238|consen 307 WQIRVAAGEPLPLKQEEIPL-NGHAFEARIYAEDPYKGFLPSAGRLVYYSFP-GHSPGVRVD-TGV---RSGDEVSIHYD 380 (670)
T ss_pred HHHHHhcCCCCCCCcceeee-cceEEEEEEeecCCcccCCCCCccceeeccC-CCCCCeeee-cCc---ccCCccccccc
Confidence 99999999954432 222 4777777666554222211 00011111110 000122211 111 123222 245
Q ss_pred CeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccccc
Q 010065 468 GRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQF 515 (519)
Q Consensus 468 ~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~ 515 (519)
..++.++++|.|+++|+.+..++++.-.+.|. |.|.-+.++.|.-.++
T Consensus 381 pmiaKlvvwg~dR~~Al~kl~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g~V 433 (670)
T KOG0238|consen 381 PMIAKLVVWGKDREEALNKLKDALDNYVIRGVPTNIDFLRDIISHPEFAKGNV 433 (670)
T ss_pred chheeeeEecCCHHHHHHHHHHHHhhcEEecCccchHHHHHHhcChhhhcCcc
Confidence 56788999999999999999999999999883 4444455555544443
No 57
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.97 E-value=1.6e-29 Score=250.04 Aligned_cols=282 Identities=19% Similarity=0.228 Sum_probs=205.1
Q ss_pred HHHHHHHHHhcCCCcEEEEecCC-CCCcCCCCCccccCCCCCC-HHHHHHHHHHcCCcEEEECCChhhHHHHHHHHHHCC
Q 010065 94 EHALCYALKRSHSCDAVFCAPGN-AGISNSGDATCIPDLDVLD-GDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAG 171 (519)
Q Consensus 94 ~~~l~~~l~~~~g~~~v~~~~~~-~~~~~~~~~~~v~~~d~~d-~~~l~~~~~~~~id~Vi~g~E~~~~~~~a~~le~~g 171 (519)
.+.+...|++...++++..+.+. ......++.....+.+..+ .+.++++|+++++|+++|+-+...+....+.++..|
T Consensus 11 ~~~~i~~lr~~~~~~i~~sh~~~~~~~~~~aD~~~~eP~~~~~yv~~~l~~C~~~~Idv~~P~~~~~~l~~~r~~F~a~G 90 (329)
T PF15632_consen 11 QRDIIRSLRANRDFTIIASHRDPRAPILYAADEAYLEPADGEEYVDWCLDFCKEHGIDVFVPGRNRELLAAHRDEFEALG 90 (329)
T ss_pred HHHHHHHHHcCCCeEEEEEeCCCCchHHhcCceeeecCCCHHHHHHHHHHHHHHhCCeEEEcCccHHHHHHHHHHHHHhC
Confidence 35577777765334333333221 1111222222111222222 788999999999999999877666778888999999
Q ss_pred CCeeC-CcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC---EEEEeCCCCCCCcEEEeC-CHHH
Q 010065 172 IPTFG-PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP---IVVKADGLAAGKGVIVAM-TLEE 246 (519)
Q Consensus 172 ip~~g-~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P---~VvKP~~g~gs~GV~~v~-~~~e 246 (519)
+.++- ++.++..++.||..+.+.+++.|+|+|+++.+++.+++..+.+++++| ++|||+.|.||.|.++++ +.++
T Consensus 91 v~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~ 170 (329)
T PF15632_consen 91 VKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDE 170 (329)
T ss_pred CEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcch
Confidence 99976 789999999999999999999999999999999999999999988877 999999999999999998 4555
Q ss_pred HHHHHH------------HHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCce
Q 010065 247 AYEAVD------------SMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMG 314 (519)
Q Consensus 247 l~~a~~------------~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (519)
+....+ .+++. .+.-.++||+||++|.||||+++.+.+.++.....++. |..+
T Consensus 171 l~~l~~~~~~~i~~~~~~~~l~~---~~~~~~llvMeyL~G~EySVD~l~~~G~viaaV~R~K~------------G~~q 235 (329)
T PF15632_consen 171 LDALFEPDSRRISLDELLAALQR---SEEFPPLLVMEYLPGPEYSVDCLADEGRVIAAVPRRKL------------GRRQ 235 (329)
T ss_pred HHHhcCCCcceeCHHHHHHHHhc---cCCCCCcEEecCCCCCeEEEEEEecCCEEEEEEEEEec------------Ccee
Confidence 444333 11110 02457899999999999999999976666544332221 1112
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHH
Q 010065 315 AYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEV 394 (519)
Q Consensus 315 ~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~ 394 (519)
.+. -++++.+..++ +.+.++++ |+++|||+.|.+| +++++|||||++|+...+. .+|+|+..+
T Consensus 236 ~l~----~~~~l~e~a~~--------l~~~~~l~--g~~NiQ~r~d~~g-~p~LLEINpR~sGGi~~s~--~aGvNlp~l 298 (329)
T PF15632_consen 236 VLE----NDEELIELARR--------LAEAFGLD--GLFNIQFRYDEDG-NPKLLEINPRPSGGIGYSC--AAGVNLPYL 298 (329)
T ss_pred EEE----ECHHHHHHHHH--------HHHHhCCC--ceEEEEEEEcCCC-CEEEEEeCCCCccchhhHh--hcCCChHHH
Confidence 221 24444444443 44788888 9999999998887 8999999999977665333 479999999
Q ss_pred HHHHHhCCCCCCC
Q 010065 395 LLAACRGELTGVT 407 (519)
Q Consensus 395 ~i~~~~g~~~~~~ 407 (519)
.++.++|...++.
T Consensus 299 a~~~~lG~~~~~~ 311 (329)
T PF15632_consen 299 AVKLALGEPIPPP 311 (329)
T ss_pred HHHHHcCCCCCCc
Confidence 9999999965443
No 58
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.97 E-value=5.2e-29 Score=257.81 Aligned_cols=395 Identities=21% Similarity=0.288 Sum_probs=285.0
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCc--CC-CCCccc-----cCC-CCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGIS--NS-GDATCI-----PDL-DVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~--~~-~~~~~v-----~~~-d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+||||-.-|.....+-++.. +.|+.++.+.+..+..+ .. ++..+. .++ ...+++.+++++++.+.|+|.|
T Consensus 8 ~KvLVANRgEIAIRvFRAa~-ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIhP 86 (1149)
T COG1038 8 KKVLVANRGEIAIRVFRAAN-ELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIHP 86 (1149)
T ss_pred heeeeeccchhhHHHHHHHH-hcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCeecC
Confidence 68888887743222233333 34999998875532211 11 111111 012 2346899999999999999999
Q ss_pred C----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEE
Q 010065 154 G----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~Vv 227 (519)
| +|.. .+++.+.+.||-++||.++.+..+.||...+....++|+|+.+.. .+.+.+++.+++++.|||+++
T Consensus 87 GYGfLSEn~---efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmi 163 (1149)
T COG1038 87 GYGFLSENP---EFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMI 163 (1149)
T ss_pred CcccccCCH---HHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEE
Confidence 5 6776 468889999999999999999999999999999999999996643 355789999999999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccc-----ccc
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESA-----QDH 298 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~-----~~~ 298 (519)
|.+.|+|++|++++.+++++.++++++.++ ..|+ ++.+.||+||+. +.+.|.++.|. ++++++-+. ++|
T Consensus 164 KA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG--~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRh 241 (1149)
T COG1038 164 KAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFG--NDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRH 241 (1149)
T ss_pred EEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcC--CCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhcc
Confidence 999999999999999999999999988754 4565 489999999999 89999999864 356655432 233
Q ss_pred ccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCC
Q 010065 299 KRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDP 378 (519)
Q Consensus 299 ~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~ 378 (519)
+.+ ..+.|+..|++++++++.+.+++ .+..++|.+.-.+||.+|++| ++||||+|||..--
T Consensus 242 QKV------------VE~APa~~L~~~~R~~ic~~Avk------la~~~~Y~~AGTvEFLvd~~~-~fyFIEvNPRiQVE 302 (1149)
T COG1038 242 QKV------------VEVAPAPYLSPELRDEICDDAVK------LARNIGYINAGTVEFLVDEDG-KFYFIEVNPRIQVE 302 (1149)
T ss_pred cee------------EEecCCCCCCHHHHHHHHHHHHH------HHHHcCCcccceEEEEEcCCC-cEEEEEecCceeeE
Confidence 332 34679999999999999998865 344555679999999999998 89999999999552
Q ss_pred chHHHHHHhCCCHHHHHHHHHhCC-CCCCCc--c-----cCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCe
Q 010065 379 ECQVLMVRLESDLAEVLLAACRGE-LTGVTL--N-----WSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSV 448 (519)
Q Consensus 379 ~~~~~~~~~G~d~~~~~i~~~~g~-~~~~~~--~-----~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~ 448 (519)
++.....+|+|+.+..+.++.|. +..+++ . ...++++...+.-++-... +++| .+
T Consensus 303 -HTiTE~vTgiDIV~aQi~ia~G~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtG--------------rI 367 (1149)
T COG1038 303 -HTITEEITGIDIVKAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTG--------------RI 367 (1149)
T ss_pred -EeeeeeeechhHHHHHHHHhccCccCCcccCCCccccccccceEEEEEeeccCcccCCCCCCc--------------eE
Confidence 22344457999999999999997 332221 1 1246788777665441111 1111 22
Q ss_pred EEEEe----eeeec----CCCcEEe-cC-CeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccc
Q 010065 449 KIFHA----GTALD----ADGNFIA-TG-GRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQK 513 (519)
Q Consensus 449 ~~~~~----~~~~~----~~g~~~~-~~-~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~ 513 (519)
..|+. |...+ -.|..++ .. +-+..+.++|.|+++|.+++.++++..++.|. |..+=+.++.|...
T Consensus 368 ~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~~F~~g 447 (1149)
T COG1038 368 TAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHPDFRSG 447 (1149)
T ss_pred EEEecCCCceEEecCCcccccceeccccccceeeEeecCCCHHHHHHHHHHHHHHheecceecCcHHHHHHhcCcccccC
Confidence 33321 11111 1233443 33 44567899999999999999999999999983 34455556666665
Q ss_pred cccc
Q 010065 514 QFAT 517 (519)
Q Consensus 514 ~~~~ 517 (519)
+..|
T Consensus 448 ~y~T 451 (1149)
T COG1038 448 RYTT 451 (1149)
T ss_pred ccee
Confidence 5544
No 59
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.97 E-value=2.2e-30 Score=242.55 Aligned_cols=191 Identities=23% Similarity=0.316 Sum_probs=153.2
Q ss_pred HHHHcCCCCCCeeecCCHHHH----HHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEE
Q 010065 194 LCDKYGIPTAKYKTFTDPNAA----KQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVII 269 (519)
Q Consensus 194 ~l~~~Gi~~p~~~~v~~~~~~----~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lv 269 (519)
+++++|||+|++..+...+.. .+....++||+||||..+++|.||.+|++.+||.++++.++. .++.+||
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~------~~~~vlV 74 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFK------YDDDVLV 74 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTT------THSEEEE
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhh------hcceEEE
Confidence 578999999999999865543 345688999999999999999999999999999999999874 5689999
Q ss_pred EeccCCcEEEEEEEEeCC-eeEEeccccccccccCCCCCCCC--CCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 010065 270 EEFLEGEEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNT--GGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEG 346 (519)
Q Consensus 270 Ee~I~G~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g 346 (519)
||||+|+|++|.++.++. .+.+.........+++|+.||.. +.....+|+. +++++.+++++.| .++++++|
T Consensus 75 EefI~G~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~-l~~~~~~~i~~~a----~~a~~~lg 149 (203)
T PF07478_consen 75 EEFISGREFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPAD-LSEELQEKIKEIA----KKAFKALG 149 (203)
T ss_dssp EE--SSEEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-S-S-HHHHHHHHHHH----HHHHHHTT
T ss_pred EeeecccceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecCC-CCHHHHHHHHHHH----HHHHHHHc
Confidence 999999999999998665 45555555555688999999843 5667778988 9999999999987 47999999
Q ss_pred CCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHh----CCCHHHHHHHHH
Q 010065 347 CKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRL----ESDLAEVLLAAC 399 (519)
Q Consensus 347 ~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~----G~d~~~~~i~~~ 399 (519)
|+ |++|+||+++++| ++||+|+|+.||++.. +.++.+ |+++.+++.+++
T Consensus 150 ~~--~~~RiD~rv~~~g-~~~~lEiNt~PGlt~~-S~~p~~~~~~G~sy~~li~~ii 202 (203)
T PF07478_consen 150 CR--GYARIDFRVDEDG-KPYFLEINTIPGLTPT-SLFPRMAEAAGISYEDLIERII 202 (203)
T ss_dssp TC--SEEEEEEEEETTT-EEEEEEEESS-G-STT-SHHHHHHHHTT--HHHHHHHHH
T ss_pred CC--CceeEEEEeccCC-ceEEEeccCcccccCC-CHHHHHHHHcCCCHHHHHHHHh
Confidence 99 9999999999887 8999999999999886 555543 999999988765
No 60
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.97 E-value=9.2e-28 Score=239.99 Aligned_cols=265 Identities=18% Similarity=0.176 Sum_probs=188.2
Q ss_pred HHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC--CChhh-HHHHHHHHHHCCCC
Q 010065 97 LCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG--PEAPL-VSGLANKLVKAGIP 173 (519)
Q Consensus 97 l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g--~E~~~-~~~~a~~le~~gip 173 (519)
+..++++. |+++.++++.+...........+ ... . .+..++|+||+. ++... -...+..||.+| +
T Consensus 18 ~~~a~~~~-g~~v~~i~~~~~~~~~~~~~~~~-~~~--~-------~~~~~~d~v~~~~~~~~~~~~~~~~~~le~~g-~ 85 (300)
T PRK10446 18 LREAAIQR-GHLVEILDPLSCYMNINPAASSI-HYK--G-------RKLPHFDAVIPRIGTAITFYGTAALRQFEMLG-S 85 (300)
T ss_pred HHHHHHHc-CCeEEEEehHHceEecCCCcccE-EEC--C-------cccCCCCEEEEcCCCchhhHHHHHHHHHHHCC-C
Confidence 67787766 99999887553210000000000 000 0 012368999983 32111 112356799999 4
Q ss_pred eeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh-CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHH
Q 010065 174 TFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE-GAPIVVKADGLAAGKGVIVAMTLEEAYEAVD 252 (519)
Q Consensus 174 ~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~-g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~ 252 (519)
++++++.++.+++||..++++|+++|||+|++..+.+.+++.++++++ +||+|+||.+|++|.||.++++.+++..+++
T Consensus 86 ~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~ 165 (300)
T PRK10446 86 YPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVID 165 (300)
T ss_pred ceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHHH
Confidence 557999999999999999999999999999999888888888877777 7999999999999999999999999988887
Q ss_pred HHHhhccCCCCCCcEEEEecc---CCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHH
Q 010065 253 SMLLKNAFGSAGCRVIIEEFL---EGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSV 329 (519)
Q Consensus 253 ~~~~~~~~~~~~~~~lvEe~I---~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~ 329 (519)
.+.. .+..+|||||| .|+|+.|.++ +++ +++........ -++..+++.|+... |.+ +++++
T Consensus 166 ~~~~------~~~~~lvQe~I~~~~g~d~rv~vi-g~~-~~~~~~r~~~~--~~~~~n~~~g~~~~--~~~-l~~~~--- 229 (300)
T PRK10446 166 AFRG------LNAHILVQEYIKEAQGCDIRCLVV-GDE-VVAAIERRAKE--GDFRSNLHRGGAAS--VAS-ITPQE--- 229 (300)
T ss_pred HHHh------cCCCEEEEeeeccCCCceEEEEEE-CCE-EEEEEEEecCC--CchhheeccCCeec--cCC-CCHHH---
Confidence 6643 34689999999 5899999877 443 44332221111 24455666665433 444 66553
Q ss_pred HHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 330 VMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 330 i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
++.+ .++++++|+. +++|||+++++| +||+|||++||++. +...+|+|+.+.+++.+...
T Consensus 230 -~~~a----~~a~~alg~~---~~gvD~~~~~~g--~~vlEvN~~pg~~~---~~~~~g~~~~~~~~~~i~~~ 289 (300)
T PRK10446 230 -REIA----IKAARTMALD---VAGVDILRANRG--PLVMEVNASPGLEG---IEKTTGIDIAGKMIRWIERH 289 (300)
T ss_pred -HHHH----HHHHHHhCCC---EEEEEEEEcCCC--cEEEEEECCCChhh---hHHHHCcCHHHHHHHHHHHh
Confidence 3433 3566888976 567999999877 89999999998753 44557999999999988766
No 61
>PRK06849 hypothetical protein; Provisional
Probab=99.96 E-value=2.2e-27 Score=246.15 Aligned_cols=269 Identities=16% Similarity=0.134 Sum_probs=186.5
Q ss_pred CCccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc---CCCC-CccccCCCCCC----HHHHHHHHHHcCCcE
Q 010065 80 GQRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS---NSGD-ATCIPDLDVLD----GDAVISFCRKWSVGL 150 (519)
Q Consensus 80 ~~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~---~~~~-~~~v~~~d~~d----~~~l~~~~~~~~id~ 150 (519)
+++++|||+|++. ...++++++++. |+++++++....... ...+ ...+ +....+ .+.|+++++++++|+
T Consensus 2 ~~~~~VLI~G~~~~~~l~iar~l~~~-G~~Vi~~d~~~~~~~~~s~~~d~~~~~-p~p~~d~~~~~~~L~~i~~~~~id~ 79 (389)
T PRK06849 2 NTKKTVLITGARAPAALELARLFHNA-GHTVILADSLKYPLSRFSRAVDGFYTI-PSPRWDPDAYIQALLSIVQRENIDL 79 (389)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHhhhheEEe-CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 3579999999985 457789999987 999998865432111 1111 1111 101112 688999999999999
Q ss_pred EEECCChhh-HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh-CCCEEEE
Q 010065 151 VVVGPEAPL-VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE-GAPIVVK 228 (519)
Q Consensus 151 Vi~g~E~~~-~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~-g~P~VvK 228 (519)
|+|+.|+.. +....+.++. ++.+.+++.+.+..++||..|+++++++|||+|++..+++.+++.++..+. +||+|+|
T Consensus 80 vIP~~e~~~~~a~~~~~l~~-~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~~~l~~~~~~~~~~P~vlK 158 (389)
T PRK06849 80 LIPTCEEVFYLSHAKEELSA-YCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDPEAIRNFMFKTPHTPYVLK 158 (389)
T ss_pred EEECChHHHhHHhhhhhhcC-CcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHhhcCCCCcEEEE
Confidence 999877543 2222233322 466778999999999999999999999999999999999999988877666 8999999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCC
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGP 308 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~ 308 (519)
|..+.+|.|+.++.+.+++. .... ..+..+|+||||+|.|+++.++..++.+........ .+. .
T Consensus 159 P~~~~~~~~v~~~~~~~~l~----~~~~-----~~~~~~ivQe~I~G~e~~~~~~~~~G~v~~~~~~~~---~~~----~ 222 (389)
T PRK06849 159 PIYSRFVRRVDLLPKEAALK----ELPI-----SKDNPWVMQEFIQGKEYCSYSIVRSGELRAHSCYKP---EYC----A 222 (389)
T ss_pred eCcccCCCeEEEecCHHHhc----cccc-----CCCCCeEEEEEecCCeEEEEEEEECCEEEEEEEeec---ccc----C
Confidence 99999999999998854432 2210 123569999999999999988874443443322111 010 0
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCch
Q 010065 309 NTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPEC 380 (519)
Q Consensus 309 ~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~ 380 (519)
..+....+.|.. ++ ++.+.+ .+++.++++. |.+++||+++++| ++|+||||||++++.+
T Consensus 223 ~~~~~~~~~~~~--~~----~l~~~~----~~~~~~l~~~--G~~~~df~~~~~g-~~~~iEiNpR~~~g~~ 281 (389)
T PRK06849 223 GSGAQIAFQPIN--HP----RIEEFV----THFVKELNYT--GQISFDFIETENG-DAYPIECNPRTTSGLH 281 (389)
T ss_pred CCCceeEeEECC--cH----HHHHHH----HHHHHhcCce--eEEEEEEEECCCC-CEEEEEecCCCCceeE
Confidence 011111223322 33 344433 3455777765 9999999998766 7999999999987665
No 62
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.96 E-value=2.3e-26 Score=233.75 Aligned_cols=377 Identities=23% Similarity=0.300 Sum_probs=272.9
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCC--CCcCC-CCCccc-----cC-CCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNA--GISNS-GDATCI-----PD-LDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~--~~~~~-~~~~~v-----~~-~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.||||-.-|.....+-+++.+ .+.+++.+..... ..... ++..++ ++ -....+++++++++++++|+|-|
T Consensus 34 ~kvlVANRgEIaIRvFRa~tE-L~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP 112 (1176)
T KOG0369|consen 34 NKVLVANRGEIAIRVFRAATE-LSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP 112 (1176)
T ss_pred ceeEEecCCcchhHHHHHHhh-hcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecC
Confidence 588888777432223334333 3788887764421 11111 111111 01 12234789999999999999999
Q ss_pred C----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCEEE
Q 010065 154 G----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK--TFTDPNAAKQYIQEEGAPIVV 227 (519)
Q Consensus 154 g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~--~v~~~~~~~~~~~~~g~P~Vv 227 (519)
| +|.. .+++.....|+.++||+++.+....||...|.+.-++|+|+.+.. .+++.+++.++.++.|+|+|+
T Consensus 113 GYGFLSErs---dFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~ 189 (1176)
T KOG0369|consen 113 GYGFLSERS---DFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVII 189 (1176)
T ss_pred Cccccccch---HHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEE
Confidence 5 5665 467779999999999999999999999999999999999997753 477899999999999999999
Q ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccCCCCCCcEEEEeccCC-cEEEEEEEEeC-CeeEEeccc-----ccc
Q 010065 228 KADGLAAGKGVIVAMTLEEAYEAVDSMLLK--NAFGSAGCRVIIEEFLEG-EEASFFALVDG-ENAIPLESA-----QDH 298 (519)
Q Consensus 228 KP~~g~gs~GV~~v~~~~el~~a~~~~~~~--~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~~-----~~~ 298 (519)
|.+.|+|++|+++|++.+|+++++.++.++ ..|+ ++.++||+||+- +.+.|..+.|. ++++++-+. +.|
T Consensus 190 KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFG--nG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRH 267 (1176)
T KOG0369|consen 190 KAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFG--NGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRH 267 (1176)
T ss_pred eecccCCCcceEEeechhhHHHHHHHHHHHHHHhcC--CceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhh
Confidence 999999999999999999999999988754 3454 488999999998 89999999864 356655432 233
Q ss_pred ccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCC
Q 010065 299 KRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDP 378 (519)
Q Consensus 299 ~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~ 378 (519)
+.+ ..+.|+..|++++++.+...+++ ..+..|+. -...+||.+|..| +.||||||+|+.--
T Consensus 268 QKV------------VEiAPA~~Lp~~vR~~~~~davk----lAk~vgY~--NAGTvEFLvD~~g-~hYFIEvN~RlQVE 328 (1176)
T KOG0369|consen 268 QKV------------VEIAPAKTLPPEVRDAILTDAVK----LAKHVGYE--NAGTVEFLVDQKG-RHYFIEVNPRLQVE 328 (1176)
T ss_pred cce------------eEecccccCCHHHHHHHHHHHHH----HHHHhCcc--cCCceEEEEccCC-CEEEEEecCceeee
Confidence 332 34789999999999999888764 44666655 5567899999988 89999999999553
Q ss_pred chHHHHHHhCCCHHHHHHHHHhCC-CCCCCcc----cCCCcEEEEEEecCCCCCC--CCCCcccccchhhhccCCCeEEE
Q 010065 379 ECQVLMVRLESDLAEVLLAACRGE-LTGVTLN----WSPGSAMVVVMASKGYPGS--YEKGSEIQNLEEAEQVAPSVKIF 451 (519)
Q Consensus 379 ~~~~~~~~~G~d~~~~~i~~~~g~-~~~~~~~----~~~~~a~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~ 451 (519)
.+ .....+|+|+.+..+.++.|. +++..+. ...++++.+.+.-++-... +++ +.+.+|
T Consensus 329 HT-vTEEITgvDlV~aQi~vAeG~tLp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdt--------------GriEVf 393 (1176)
T KOG0369|consen 329 HT-VTEEITGVDLVQAQIHVAEGASLPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDT--------------GRIEVF 393 (1176)
T ss_pred ee-eeeeeccchhhhhhhhhhcCCCcccccccccceeecceEEEEEEeccCccccCCCCC--------------ceEEEE
Confidence 22 444557999999999999998 4444332 1246777776655431111 111 234445
Q ss_pred Eeee----eec----CCCcEEe--cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe
Q 010065 452 HAGT----ALD----ADGNFIA--TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG 499 (519)
Q Consensus 452 ~~~~----~~~----~~g~~~~--~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~ 499 (519)
..+. ..+ -.|.+++ .++-+..+++.|.|++-+.++..+++.+.++.|.
T Consensus 394 RSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRiRGV 451 (1176)
T KOG0369|consen 394 RSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRIRGV 451 (1176)
T ss_pred EeCCCceEeecCccccccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhhcce
Confidence 4321 111 1234444 2455678999999999999999999999999884
No 63
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.95 E-value=1.7e-26 Score=216.87 Aligned_cols=200 Identities=25% Similarity=0.324 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHcCCCCCCeeec--CCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhc--cCCC
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTF--TDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKN--AFGS 262 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v--~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~--~~~~ 262 (519)
||..++++++++|+|+|++... ++.+++.++++++|||+++||+.++|++|++++++.+||.++++...... .|
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~f-- 78 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAF-- 78 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccc--
Confidence 8999999999999999999887 99999999999999999999999999999999999999999999887542 23
Q ss_pred CCCcEEEEeccCC-cEEEEEEEEeCC-eeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHH
Q 010065 263 AGCRVIIEEFLEG-EEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVK 340 (519)
Q Consensus 263 ~~~~~lvEe~I~G-~E~sv~~l~dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~ 340 (519)
.+..+++|+|++| +|+.|++++|+. +++.+........ -|.+.+....|+..|+++..+++++.+. +
T Consensus 79 g~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~-------~hs~dsi~~~P~~~L~~~~~~~l~~~a~----~ 147 (211)
T PF02786_consen 79 GDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQ-------RHSQDSIEEAPAQTLSDEERQKLREAAK----K 147 (211)
T ss_dssp STS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEE-------ETTEEEEEEES-SSS-HHHHHHHHHHHH----H
T ss_pred ccceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccc-------cccccceeEeeccccchHHHHHHHHHHH----H
Confidence 2578999999999 999999999986 4554443221111 1445566788998899999999999875 4
Q ss_pred HHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 341 GMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 341 ~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
+.+++++. |++++||.++++++++||+|+|||..-+.. .....+|+|+.++.+++++|.
T Consensus 148 ia~~l~~~--G~~tvef~~~~~~~~~y~lEvNpR~~~~~p-~~e~~tg~dlv~~~~~ia~G~ 206 (211)
T PF02786_consen 148 IARALGYV--GAGTVEFAVDPDDGEFYFLEVNPRLQREHP-VTEKVTGYDLVRVQIRIALGE 206 (211)
T ss_dssp HHHHTT-E--EEEEEEEEEETTTTEEEEEEEESS--TTHH-HHHHHHT--HHHHHHHHHTT-
T ss_pred HHHhhCee--ecceEEEEEccCccceeeecccCCCCCcch-HHHHHHCCCHHHHHHHHHCCC
Confidence 66677754 999999999984448999999999977554 555667999999999999998
No 64
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.94 E-value=5.3e-24 Score=210.70 Aligned_cols=260 Identities=21% Similarity=0.185 Sum_probs=178.5
Q ss_pred HHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECC-ChhhHHHHHHHHHHCCCCe
Q 010065 96 ALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGP-EAPLVSGLANKLVKAGIPT 174 (519)
Q Consensus 96 ~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~-E~~~~~~~a~~le~~gip~ 174 (519)
.+..++++. |+++.++++.+.... .+... ....++|+|++.. +...-..+++.++..|+|+
T Consensus 15 ~l~~a~~~~-g~~~~~~~~~~~~~~----------~~~~~-------~~~~~~d~v~~r~~~~~~~~~~~~~l~~~g~~~ 76 (277)
T TIGR00768 15 MLKEAAEEL-GIDYKVVTPPAIPLT----------FNEGP-------RELAELDVVIVRIVSMFRGLAVARYLESLGVPV 76 (277)
T ss_pred HHHHHHHHc-CCceEEEEhHHcEEe----------ccCCC-------ccCCCCCEEEEechhHhhHHHHHHHHHHCCCee
Confidence 467777665 998888765432110 00000 0023588888832 1111124677789999999
Q ss_pred eCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHH
Q 010065 175 FGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSM 254 (519)
Q Consensus 175 ~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~ 254 (519)
+ ++++++..++||..++++|+++|+|+|++..+.+.+++.++.++++||+|+||..|++|.||.++++.+++..+++..
T Consensus 77 ~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~ 155 (277)
T TIGR00768 77 I-NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHF 155 (277)
T ss_pred e-CCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHhcCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHH
Confidence 8 568999999999999999999999999999999999999999999999999999999999999999999998887765
Q ss_pred HhhccCCCCCCcEEEEeccCCcE-EEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHH
Q 010065 255 LLKNAFGSAGCRVIIEEFLEGEE-ASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMES 333 (519)
Q Consensus 255 ~~~~~~~~~~~~~lvEe~I~G~E-~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~ 333 (519)
.... .....+++||||+|.+ +++.++..++.+...........+ ....+.|+ ...|.. ++++. .+.
T Consensus 156 ~~~~---~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~~~~---~~n~~~g~--~~~~~~-l~~~~----~~~ 222 (277)
T TIGR00768 156 EQLN---GPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITSGHW---RTNLARGG--KAEPCP-LTEEI----EEL 222 (277)
T ss_pred HHhc---ccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCCCch---hhhhhcCC--eeeecC-CCHHH----HHH
Confidence 4210 1124799999999754 555555544444322211111111 11122222 234555 66543 333
Q ss_pred HHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 334 IILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 334 a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
+ .+++.++++ |++++||+++++| ++|++|+|+|||... +...+|+|+.+++++.
T Consensus 223 a----~~~~~~l~~---~~~~vD~~~~~~g-~~~viEiN~~p~~~~---~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 223 A----IKAAKALGL---DVVGIDLLESEDR-GLLVNEVNPNPEFKN---SVKTTGVNIAGKLLDY 276 (277)
T ss_pred H----HHHHHHhCC---CeEEEEEEEcCCC-CeEEEEEcCCcchhh---hHHHHCCCHHHHHHhh
Confidence 3 245567775 5677999999886 799999999998643 3445799999998864
No 65
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.94 E-value=6e-24 Score=210.75 Aligned_cols=263 Identities=20% Similarity=0.142 Sum_probs=179.9
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChhhHHHHHHHHHHCCCC
Q 010065 95 HALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAPLVSGLANKLVKAGIP 173 (519)
Q Consensus 95 ~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~~~~~~a~~le~~gip 173 (519)
..+..++++. |+++..++..+... ..+..+ ....++|++++- .-+.....++..++..|+|
T Consensus 13 ~~l~~al~~~-g~~~~~~~~~~~~~----------~~~~~~-------~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~ 74 (280)
T TIGR02144 13 KMLIEELEKL-GLPYRKIYVPALPL----------PFGERP-------KELEDVDVAIIRCVSQSRALYSARLLEALGVP 74 (280)
T ss_pred HHHHHHHHHc-CCceEEEEhhheEE----------EcCCCc-------cccCCCCEEEEcCcchhhHHHHHHHHHHCCCc
Confidence 4466677666 99988775432111 011000 011368998883 1112222456678999999
Q ss_pred eeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHH
Q 010065 174 TFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDS 253 (519)
Q Consensus 174 ~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~ 253 (519)
++ ++++++.++.||..++++|+++|||+|++..+.+.+++.++.+.++||+|+||..|++|.||.++++.+++.++++.
T Consensus 75 ~~-n~~~~~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~ 153 (280)
T TIGR02144 75 VI-NSSHVIEACGDKIFTYLKLAKAGVPTPRTYLAFDREAALKLAEALGYPVVLKPVIGSWGRLVALIRDKDELESLLEH 153 (280)
T ss_pred EE-CcHHHHHHHhhHHHHHHHHHHCCcCCCCeEeeCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEECCHHHHHHHHHH
Confidence 98 57899999999999999999999999999999888888888888999999999999999999999999999887753
Q ss_pred HHhhccCCCCCCcEEEEeccCC--cEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHH
Q 010065 254 MLLKNAFGSAGCRVIIEEFLEG--EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVM 331 (519)
Q Consensus 254 ~~~~~~~~~~~~~~lvEe~I~G--~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~ 331 (519)
.... ....+..+|+|+||+| +++++.++ +++ ..... .+.. .++......| +...|.+ +++++.
T Consensus 154 ~~~~--~~~~~~~~ivQefI~~~~~d~~v~vi-g~~-~~~~~-~r~~---~~~~~~~~~g--~~~~~~~-~~~~~~---- 218 (280)
T TIGR02144 154 KEVL--GGSQHKLFYIQEYINKPGRDIRVFVI-GDE-AIAAI-YRYS---NHWRTNTARG--GKAEPCP-LDEEVE---- 218 (280)
T ss_pred HHhh--cCCcCCeEEEEcccCCCCCceEEEEE-CCE-EEEEE-EEcC---CchhhhhhcC--CceeccC-CCHHHH----
Confidence 2110 0013357999999985 56666554 333 32111 1111 1111111222 2345666 676543
Q ss_pred HHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 332 ESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 332 ~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
+.+ .++++++|+ |+++|||+++++| ++|++|||+|||++. +...+|+|+.+.+++.+..+
T Consensus 219 ~~a----~~~~~~lg~---~~~~vD~~~~~~g-~~~v~EvN~~p~~~~---~~~~~g~~~~~~~~~~~~~~ 278 (280)
T TIGR02144 219 ELA----VKAAEAVGG---GVVAIDIFESKER-GLLVNEVNHVPEFKN---SVRVTGVNVAGEILEYAVSL 278 (280)
T ss_pred HHH----HHHHHHhCC---CeEEEEEEEcCCC-CEEEEEEeCCcchhh---hhHhhCCCHHHHHHHHHHHh
Confidence 333 345578885 5778999999876 699999999998854 34557999999999987654
No 66
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.94 E-value=2e-25 Score=206.92 Aligned_cols=182 Identities=21% Similarity=0.289 Sum_probs=124.2
Q ss_pred HhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCC
Q 010065 184 LEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSA 263 (519)
Q Consensus 184 ~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~ 263 (519)
+++||..|+++++++|+|+|++..+.+.+++.++.+.++||+||||..++||.||.++++.+|+.++++.+..... ..
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~--~~ 78 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP--LG 78 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS---H
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--cC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999998864311 01
Q ss_pred CCcEEEEeccCCcEEEEEEEEeCCeeEEecccccccc-ccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 010065 264 GCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKR-VGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGM 342 (519)
Q Consensus 264 ~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~ 342 (519)
...+|+||||+|.|+++.++..++.++.+...+.... ...... ....+...+.+ ....+++.+.+ .+++
T Consensus 79 ~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~----~~~~ 148 (184)
T PF13535_consen 79 NGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYVRQSPGHFSG---GVPTGYSVPSE---PPLPEELRDLA----RKLL 148 (184)
T ss_dssp SSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEEEEETCCCSS---SEEEEEEES-----CEHHHHHHHHH----HHHH
T ss_pred CccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEeccccccccc---ceeeeeecccc---cccHHHHHHHH----HHHH
Confidence 3689999999999999999985554443333222111 111000 01122233322 22334555544 4567
Q ss_pred HHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCc
Q 010065 343 SAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPE 379 (519)
Q Consensus 343 ~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~ 379 (519)
.++|+. +|++|+||+++++| +++++|||||+||+.
T Consensus 149 ~~~g~~-~G~~~id~~~~~~g-~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 149 RALGYR-NGFFHIDFIVDPDG-ELYFIEINPRFGGGS 183 (184)
T ss_dssp HHHT---SEEEEEEEEEETCC-EEEEEEEESS--STT
T ss_pred HHcCCc-eEEEEEEEEEeCCC-CEEEEEECccCCCCC
Confidence 888985 49999999999996 899999999998854
No 67
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.93 E-value=1.3e-23 Score=211.28 Aligned_cols=277 Identities=16% Similarity=0.196 Sum_probs=183.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCCc-CCCCCccccCCC-C---CCHHHHHHHHHHcCCcEEEE-C
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGIS-NSGDATCIPDLD-V---LDGDAVISFCRKWSVGLVVV-G 154 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~~-~~~~~~~v~~~d-~---~d~~~l~~~~~~~~id~Vi~-g 154 (519)
+++|..+|+-. ..++.+.++++ |++++.+.... .... .....+.+..+| . .|.+.+.++.+ .+.. ++| |
T Consensus 18 ~~~i~~~~shs-aL~I~~gAkee-Gf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~~~~~~~l~~-~~~i-iIp~g 93 (358)
T PRK13278 18 NITIATIGSHS-SLQILKGAKKE-GFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILNEAVQEKLRE-MNAI-LIPHG 93 (358)
T ss_pred cceEEEEeccc-HHHHHHHHHHC-CCeEEEEEeCCCccccccccccceEEEEcchhhhcCHHHHHHHhh-cCcE-EEeCC
Confidence 45788888763 45688888877 99999886442 1111 111111111222 2 22233333333 3332 555 5
Q ss_pred CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCC
Q 010065 155 PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAA 234 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~g 234 (519)
++.+.+ + ++.++.+++|++| +.+++.+..||..++++|+++|||+|++ +.+.+ +++||+||||..+.|
T Consensus 94 s~v~y~-~-~d~l~~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~--~~~~~-------~i~~PvIVKp~~g~g 161 (358)
T PRK13278 94 SFVAYL-G-LENVEKFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRK--YESPE-------DIDRPVIVKLPGAKG 161 (358)
T ss_pred Ccceee-c-HHHHHHCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCE--eCCHH-------HcCCCEEEEeCCCCC
Confidence 565544 3 3445578999885 8889999999999999999999999996 44543 357999999999999
Q ss_pred CCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEe---CCeeEEeccccccccc----c-----
Q 010065 235 GKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVD---GENAIPLESAQDHKRV----G----- 302 (519)
Q Consensus 235 s~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~d---g~~~~~~~~~~~~~~~----~----- 302 (519)
|+|++++++.+|+.++++.+.....++. .+.++|||||.|.||+++++.. |+ +..+...+++... +
T Consensus 162 gkGv~i~~s~~El~~~~~~l~~~~~~~~-~~~~iIEEfI~G~e~sv~~f~s~~~~~-~e~l~id~r~~~~~d~~~r~p~~ 239 (358)
T PRK13278 162 GRGYFIAKSPEEFKEKIDKLIERGLITE-VEEAIIQEYVVGVPYYFHYFYSPIKNR-LELLGIDRRYESNIDGLVRIPAK 239 (358)
T ss_pred CCCeEEeCCHHHHHHHHHHHHhccccCC-CCeEEEEecCCCcEEEEEEEEeccCCe-EEEEeeceeeeecccceeeccch
Confidence 9999999999999999998865433322 5789999999999999999964 44 3333332222110 0
Q ss_pred ---CCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEEcCCCceEEEEEeCCC-CC
Q 010065 303 ---DGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE-GCKFVGVLYAGLMIEKKSGLPKLIEYNVRF-GD 377 (519)
Q Consensus 303 ---~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~~~g~~~~viEiN~R~-G~ 377 (519)
.....+.....+ ..|+. +.+.+...+.+.+.+.+..+.+.+ +.. .|++++|+++++++ ++|++|+|+|+ ||
T Consensus 240 ~~~~~~~~p~~v~~G-n~P~~-~resll~~v~~~~~~~v~a~~~~~~~~~-~Gp~~ie~~~~~d~-~~~V~Eis~R~~gg 315 (358)
T PRK13278 240 DQLELGIDPTYVVVG-NIPVV-LRESLLPQVFEYGERFVETSKELVPPGM-IGPFCLESVVTDNL-EIVVFEISARIVAG 315 (358)
T ss_pred hhhhcccCCceeEec-ceecc-chHhHHHHHHHHHHHHHHHHHHhcCccc-cCCceEEEEEcCCC-CEEEEEEeCcccCC
Confidence 011122222233 35776 777777777776654333333334 332 49999999999887 79999999999 76
Q ss_pred Cch
Q 010065 378 PEC 380 (519)
Q Consensus 378 ~~~ 380 (519)
|..
T Consensus 316 tn~ 318 (358)
T PRK13278 316 TNL 318 (358)
T ss_pred ccc
Confidence 544
No 68
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.93 E-value=3.5e-24 Score=203.26 Aligned_cols=348 Identities=18% Similarity=0.134 Sum_probs=229.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEec---CCCCC-cC--C--CCCccccCCCCCCHHHHHHHHHH--cCCcE-
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAP---GNAGI-SN--S--GDATCIPDLDVLDGDAVISFCRK--WSVGL- 150 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~---~~~~~-~~--~--~~~~~v~~~d~~d~~~l~~~~~~--~~id~- 150 (519)
+.|+|++|...+. ++..+.+. |+++..+.- .+... .. . .....+..+...|.+.|++.+.+ .++|+
T Consensus 11 ~~kiLviGvntR~--vveSA~kl-Gf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~ 87 (389)
T COG2232 11 SCKILVIGVNTRP--VVESASKL-GFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAP 87 (389)
T ss_pred cceEEEEeecchH--hHHHHHhc-CeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhccee
Confidence 4689999998754 55665555 898877642 22110 00 0 00011112235567888888776 45888
Q ss_pred EEEC-CChhhHHHHHHHHHHCCCCeeCCcHH-HHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEE
Q 010065 151 VVVG-PEAPLVSGLANKLVKAGIPTFGPSSE-AAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVK 228 (519)
Q Consensus 151 Vi~g-~E~~~~~~~a~~le~~gip~~g~~~~-~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvK 228 (519)
++++ +...+- .--.++.++.|++++ ....+.+|..+.+.+..+|+|.|+....... +.--.++|+|
T Consensus 88 ii~~sg~e~l~-----~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e~~-------~~gekt~IlK 155 (389)
T COG2232 88 IIPFSGFEALR-----TSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIEPL-------EEGEKTLILK 155 (389)
T ss_pred eeecccccccc-----ccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhhhhh-------hhcceeeEEe
Confidence 5553 222210 012456788898888 8888999999999999999999986544211 1223689999
Q ss_pred eCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCC-
Q 010065 229 ADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTG- 307 (519)
Q Consensus 229 P~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~- 307 (519)
|+.|+||. +.++.-.++ . ....+|.|+||+|+.+|+.++.+|...+++....+... +..+
T Consensus 156 Pv~GaGG~-~el~~~~Ee-------~--------~~~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~QiI~---~~~~~ 216 (389)
T COG2232 156 PVSGAGGL-VELVKFDEE-------D--------PPPGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQIID---GLRGE 216 (389)
T ss_pred eccCCCce-eeecccccc-------c--------CCcceehhhhcCCceeEEEEEecCcceEEEEEeeeeec---ccccc
Confidence 99999885 222221111 1 23789999999999999999999987766655443221 1111
Q ss_pred C-CCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHH
Q 010065 308 P-NTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVR 386 (519)
Q Consensus 308 ~-~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~ 386 (519)
+ .+...|..+|.+.... +++.+.+. .+...+|+. |...|||.+++.| +|+||||||+.|+.- .+...
T Consensus 217 ~~~f~Y~GNlTP~~~~~~---ee~e~la~----elV~~lgL~--GsnGVDfvl~d~g--pyViEVNPR~qGt~e-~iE~s 284 (389)
T COG2232 217 YSQFVYKGNLTPFPYEEV---EEAERLAE----ELVEELGLV--GSNGVDFVLNDKG--PYVIEVNPRIQGTLE-CIERS 284 (389)
T ss_pred cccceeccCcCCCcchhh---HHHHHHHH----HHHHHhccc--cccccceEeecCC--cEEEEecCcccchHH-HHHHh
Confidence 1 1112344567653222 44444443 344677776 9999999999999 999999999988665 67777
Q ss_pred hCCCHHHHHHHHHhCCCCCCCcccCCCcEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEec
Q 010065 387 LESDLAEVLLAACRGELTGVTLNWSPGSAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIAT 466 (519)
Q Consensus 387 ~G~d~~~~~i~~~~g~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 466 (519)
+|+|++++++.+..|+++.. ++. .++++..++.++. . ..+. .+ -..+++ +.+ ..|+++..
T Consensus 285 ~giNl~~lHi~af~G~LpEr-~kp-r~~a~krILyap~---~----v~v~---~l----~~~~~~---DiP-~~Gtviek 344 (389)
T COG2232 285 SGINLFRLHIQAFDGELPER-PKP-RGYACKRILYAPR---T----VRVP---IL----KLSWTH---DIP-RPGTVIEK 344 (389)
T ss_pred cCCCHHHHHHHHhcCcCcCC-CCc-ceeEEeEEEeccc---e----eecc---cc----cccccc---cCC-CCCcccCC
Confidence 89999999999999997543 222 3577777777654 1 1121 11 012222 333 57889999
Q ss_pred CCeEEEEEEecCCHHHHHHHHHHHhhccc
Q 010065 467 GGRVLGVTAKGKDVEEAQDRAYLAVEEIN 495 (519)
Q Consensus 467 ~~rvg~vi~~g~t~~ea~~~a~~~~~~i~ 495 (519)
+..+++|+|.+.|+++|...+++..+++.
T Consensus 345 gePl~sviA~~nt~~~a~~~~er~~ervk 373 (389)
T COG2232 345 GEPLCSVIASSNTRSGAESMAERLAERVK 373 (389)
T ss_pred CCceeeeeeccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887664
No 69
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.91 E-value=7.2e-23 Score=215.04 Aligned_cols=309 Identities=18% Similarity=0.265 Sum_probs=246.5
Q ss_pred CCCcccccCCCCCCCccEEEEEeCChh-----------HHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCCccccCCCC
Q 010065 67 SQPSVSVNAPTNAGQRVVVLVIGGGGR-----------EHALCYALKRSHSCDAVFCAPGNAGISNS--GDATCIPDLDV 133 (519)
Q Consensus 67 ~e~~vS~~s~~~~~~~~~vliiG~g~~-----------~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~~~v~~~d~ 133 (519)
.||||+... ..++|+|+|-. ...-++.|++. |+.++.++- ||.+.+. +.++.+ +++.
T Consensus 910 ~~hDv~F~~-------~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~-g~kTimvNy-NPETVSTDyDecdrL-YFee 979 (1435)
T KOG0370|consen 910 TEHDVDFNE-------HGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKL-GKKTIMVNY-NPETVSTDYDECDRL-YFEE 979 (1435)
T ss_pred cccccccCC-------CceEEEcccceecccceeechhhhhHHHHHHHc-CCceEEEec-CcccccCchHHHhhH-hHhh
Confidence 788888663 46899998831 24457777776 999998842 3333222 122333 4555
Q ss_pred CCHHHHHHHHHHcCCcEEEE--CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCH
Q 010065 134 LDGDAVISFCRKWSVGLVVV--GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDP 211 (519)
Q Consensus 134 ~d~~~l~~~~~~~~id~Vi~--g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~ 211 (519)
-..+.++++=..++..+++. |+..+- .++-.|.+.|++++|.+++.+..+.|+..+.+.|.+.|+..|+|..+++.
T Consensus 980 is~E~vmDiYe~E~~~G~iis~GGQ~pn--NiA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~ 1057 (1435)
T KOG0370|consen 980 ISYERVMDIYELENSEGIIISVGGQLPN--NIALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSL 1057 (1435)
T ss_pred hhhhhhhhhhhhccCCceEEEecCcCcc--hhhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhhhccH
Confidence 56778888877778888876 666654 45666889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEE-eCCee
Q 010065 212 NAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALV-DGENA 289 (519)
Q Consensus 212 ~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~-dg~~~ 289 (519)
+++.++++++||||+|.|+.--++.-+.++.+.+||+.+++.+..- +.+.++++.+||+| +|+.++++. ||+.+
T Consensus 1058 ~eA~~F~~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~v----s~dhPVVisKfie~AkEidvDAVa~~G~~~ 1133 (1435)
T KOG0370|consen 1058 EEAKKFAEKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAV----SPDHPVVISKFIEGAKEIDVDAVASDGKVL 1133 (1435)
T ss_pred HHHHHHHHhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhc----CCCCCEEhHHhhcccceechhhhccCCeEE
Confidence 9999999999999999999988899999999999999999988643 46789999999999 999999996 66633
Q ss_pred EEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEE
Q 010065 290 IPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLI 369 (519)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~vi 369 (519)
. . .+.+|-. ++|.|.|......|...++++..+++.+.+. ++.+++.+. |+++++|+.+++. +.+|
T Consensus 1134 ~-h-aiSEHvE----nAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~----ki~~a~~it--GPfN~Q~i~k~n~--lkVI 1199 (1435)
T KOG0370|consen 1134 V-H-AISEHVE----NAGVHSGDATLVLPPQDLSADTLERIKDIAA----KVAKALKIT--GPFNMQIIAKDNE--LKVI 1199 (1435)
T ss_pred E-E-ehhhhhh----cccccCCceeEeCCchhcCHHHHHHHHHHHH----HHHHHhccc--CCceEEEEecCCe--EEEE
Confidence 2 2 2233322 5778888888888988899999999998774 455777766 9999999998876 9999
Q ss_pred EEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCCCCC
Q 010065 370 EYNVRFGDPECQVLMVRLESDLAEVLLAACRGELTGV 406 (519)
Q Consensus 370 EiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~~~~ 406 (519)
|+|-|...+.. .....+|+||.++..+...|....+
T Consensus 1200 ECN~RaSRSFP-FvSKtlgvdfi~~At~~i~g~~~~~ 1235 (1435)
T KOG0370|consen 1200 ECNVRASRSFP-FVSKTLGVDFIALATRAIMGVPVPP 1235 (1435)
T ss_pred Eeeeeeecccc-ceehhcCchHHHHHHHHHhCCCCCC
Confidence 99999976554 3444569999999999999974443
No 70
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.91 E-value=7.6e-22 Score=214.54 Aligned_cols=336 Identities=18% Similarity=0.254 Sum_probs=254.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEC----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCee--
Q 010065 133 VLDGDAVISFCRKWSVGLVVVG----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYK-- 206 (519)
Q Consensus 133 ~~d~~~l~~~~~~~~id~Vi~g----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~-- 206 (519)
..+.+-+++++++.++|+|.+| +|.+. +-+.|...||-++||+..++....||....-+++.+|+|+.+|-
T Consensus 123 yANVdlIvdiAe~~~VdAVWaGWGHASENP~---LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS 199 (2196)
T KOG0368|consen 123 YANVDLIVDIAERTDVDAVWAGWGHASENPE---LPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGS 199 (2196)
T ss_pred cccHHHHHHHHHhcccceEeecccccccCcc---hHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCC
Confidence 3458999999999999999995 57775 45569999999999999999999999999999999999998752
Q ss_pred ------------------------ecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCC
Q 010065 207 ------------------------TFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGS 262 (519)
Q Consensus 207 ------------------------~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~ 262 (519)
.+.+.+|..++++.+|||+++|.+.|+||+|+++|++.+|+...+++...+ -
T Consensus 200 ~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~E----v 275 (2196)
T KOG0368|consen 200 GVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE----V 275 (2196)
T ss_pred cceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhh----C
Confidence 123567777888999999999999999999999999999999999988754 3
Q ss_pred CCCcEEEEeccCC-cEEEEEEEEeC-CeeEEecc-----ccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHH
Q 010065 263 AGCRVIIEEFLEG-EEASFFALVDG-ENAIPLES-----AQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESII 335 (519)
Q Consensus 263 ~~~~~lvEe~I~G-~E~sv~~l~dg-~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~ 335 (519)
++.++++.+...+ +.+.|..+.|. ++++.+.. .++|+.+.+ -.|+.+.+.+..+++.+.|+
T Consensus 276 PGSPIFlMK~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIE------------EAPatIap~etf~~Me~~Av 343 (2196)
T KOG0368|consen 276 PGSPIFLMKLADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIE------------EAPATIAPPETFKKMEQAAV 343 (2196)
T ss_pred CCCceeeeecccCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHh------------hCCcccCCHHHHHHHHHHHH
Confidence 5688999999998 99999999864 33443322 234555443 23777678888999998886
Q ss_pred HHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHhCCC----CCC-----
Q 010065 336 LPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACRGEL----TGV----- 406 (519)
Q Consensus 336 ~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~g~~----~~~----- 406 (519)
+ ..+..| |.+...||+.+.++.+++||+|.|||..- .+......+|+|++.+.+++++|.+ ++.
T Consensus 344 r----Lak~VG--YvSAGTVEYLYsp~d~~fyFLELNPRLQV-EHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg 416 (2196)
T KOG0368|consen 344 R----LAKLVG--YVSAGTVEYLYSPDDGEYYFLELNPRLQV-EHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYG 416 (2196)
T ss_pred H----HHHhhc--ceecceEEEEEecCCCcEEEEecCccccc-cCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcC
Confidence 4 445556 56999999999986669999999999955 2334555679999999999999973 110
Q ss_pred -------C-------cccCCCcEEEEEEecCCCCC--CCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEe-cCCe
Q 010065 407 -------T-------LNWSPGSAMVVVMASKGYPG--SYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIA-TGGR 469 (519)
Q Consensus 407 -------~-------~~~~~~~a~~~~l~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~r 469 (519)
+ ...++++.+...+..++ |. .....-.|..+..- ..+++|-|.. +...|.+.. +++.
T Consensus 417 ~~~~GdS~idfe~~~~p~pkgHciA~RITsEd-PddgFkPSsG~v~eLnFr--SssnvWgYFS---V~~~g~iHeFadSQ 490 (2196)
T KOG0368|consen 417 LEPTGDSPIDFENAKLPCPKGHCIAARITSED-PDDGFKPSSGTVQELNFR--SSSNVWGYFS---VGNGGGIHEFADSQ 490 (2196)
T ss_pred CCCCCCCCCChhhccCCCCCceEEEEEeeccC-CCCCcCCCCCeeEEeccC--CCCCeeEEEE---ecCCCceeeccccc
Confidence 0 11234667777766654 32 11122234443321 2346665532 113455655 6788
Q ss_pred EEEEEEecCCHHHHHHHHHHHhhccccCCee
Q 010065 470 VLGVTAKGKDVEEAQDRAYLAVEEINWPGGF 500 (519)
Q Consensus 470 vg~vi~~g~t~~ea~~~a~~~~~~i~~~g~~ 500 (519)
+||+.+.|+|+++|++++--+++.+.+.|.+
T Consensus 491 FGHiFa~Ge~R~eAi~nMv~aLKelsIRgdF 521 (2196)
T KOG0368|consen 491 FGHIFAFGESRQEAIANMVVALKELSIRGDF 521 (2196)
T ss_pred cceeeeecCcHHHHHHHHHHHHHheeecccc
Confidence 9999999999999999999999999998854
No 71
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.88 E-value=1.7e-21 Score=176.31 Aligned_cols=165 Identities=24% Similarity=0.266 Sum_probs=127.3
Q ss_pred HHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEe-CCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEecc
Q 010065 195 CDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA-DGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFL 273 (519)
Q Consensus 195 l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP-~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I 273 (519)
|+++|||+|+|..+.+.+++.++++++|||+|+|+ ..|..++|..++++.+|+..++..+ ....+|+|+||
T Consensus 1 l~~~gip~~~~~~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~~v 72 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEEFV 72 (172)
T ss_dssp HHHTT--B-EEEEESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE--
T ss_pred CcccCCCCCCeEEECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEecc
Confidence 68999999999999999999999999999999995 6778899999999999999999887 35899999999
Q ss_pred CC-cEEEEEEEEeCC-eeEEecc--ccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 010065 274 EG-EEASFFALVDGE-NAIPLES--AQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKF 349 (519)
Q Consensus 274 ~G-~E~sv~~l~dg~-~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~ 349 (519)
+. +|+++-+.++.. .+..++. .......+. ..+.|++ +++++.+++++.+. +++.+++.
T Consensus 73 ~f~~EiSvivaR~~~G~~~~yp~~en~~~~~il~----------~s~~Pa~-i~~~~~~~a~~ia~----~i~~~l~~-- 135 (172)
T PF02222_consen 73 PFDREISVIVARDQDGEIRFYPPVENVHRDGILH----------ESIAPAR-ISDEVEEEAKEIAR----KIAEALDY-- 135 (172)
T ss_dssp -ESEEEEEEEEEETTSEEEEEEEEEEEEETTEEE----------EEEESCS-S-HHHHHHHHHHHH----HHHHHHTS--
T ss_pred CCcEEEEEEEEEcCCCCEEEEcCceEEEECCEEE----------EEECCCC-CCHHHHHHHHHHHH----HHHHHcCc--
Confidence 98 999999998543 3333333 332223332 4578999 89998888888764 67777775
Q ss_pred eeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHH
Q 010065 350 VGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLM 384 (519)
Q Consensus 350 ~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~ 384 (519)
.|++.||||++++|.++|++||.|||..+.++++.
T Consensus 136 vGv~~VE~Fv~~~g~~v~vNEiaPRpHnSGh~Ti~ 170 (172)
T PF02222_consen 136 VGVLAVEFFVTKDGDEVLVNEIAPRPHNSGHWTIE 170 (172)
T ss_dssp SEEEEEEEEEETTSTEEEEEEEESS--GGGGGHHH
T ss_pred EEEEEEEEEEecCCCEEEEEeccCCccCcccEeee
Confidence 49999999999988339999999999999987764
No 72
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.87 E-value=1.6e-20 Score=185.59 Aligned_cols=298 Identities=18% Similarity=0.198 Sum_probs=184.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCC-cCC-CCCccccCCC-CCC--HHHHHHHHHHcCCcEEEECC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGI-SNS-GDATCIPDLD-VLD--GDAVISFCRKWSVGLVVVGP 155 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~-~~~-~~~~~v~~~d-~~d--~~~l~~~~~~~~id~Vi~g~ 155 (519)
+.+|..+|+.. ..++..-++++ |.+++.+.... ... ... ...+.+..+| ..| -+.+.+.+++.+. .++|.+
T Consensus 17 ~~~i~t~~SHs-al~i~~gAk~e-gf~t~~v~~~~r~~~Y~~f~~~~d~~i~~~~f~~~~~~~~~~~l~~~n~-i~iPh~ 93 (366)
T PRK13277 17 KVKIGVLASHS-ALDVFDGAKDE-GFRTIAVCQKGRERTYREFKGIVDEVIVLDKFKDILSEKVQDELREENA-IFVPNR 93 (366)
T ss_pred ccEEEEEecch-HHHHhccHHhc-CCcEEEEEcCCCcchhhhhccccceEEEecchhhhhhHHHHHHHHHCCe-EEecCC
Confidence 45788888873 23455555656 99998886442 111 111 0111110122 111 1234444444332 344532
Q ss_pred ChhhHHHHHHHHH-HCCCCeeCCcHHHHHHh--cCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCC
Q 010065 156 EAPLVSGLANKLV-KAGIPTFGPSSEAAALE--GSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGL 232 (519)
Q Consensus 156 E~~~~~~~a~~le-~~gip~~g~~~~~~~~~--~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g 232 (519)
--....++ +..| .+.+|++|+ -...++. +||..+.++|+++||++|++.. ++ +++.+|+||||..+
T Consensus 94 sf~~y~g~-~~ie~~~~vp~fGn-r~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~~--~p-------~eId~PVIVKp~~a 162 (366)
T PRK13277 94 SFAVYVGY-DAIENEFKVPIFGN-RYLLRWEERTGEKNYYWLLEKAGIPYPKLFK--DP-------EEIDRPVIVKLPEA 162 (366)
T ss_pred CeEEEecH-HHHhhcCCCCcccC-HHHhhhhhccCHHHHHHHHHHcCCCCceeec--Cc-------cccCccEEEEECCC
Confidence 22222243 3355 689999975 3344444 8898888899999999999765 22 35689999999999
Q ss_pred CC--CCcEEEeCCHHHHHHHHHHHHhhccCC-CCCCcEEEEeccCCcEEEEEEEEe--CCeeEEeccccccccccC----
Q 010065 233 AA--GKGVIVAMTLEEAYEAVDSMLLKNAFG-SAGCRVIIEEFLEGEEASFFALVD--GENAIPLESAQDHKRVGD---- 303 (519)
Q Consensus 233 ~g--s~GV~~v~~~~el~~a~~~~~~~~~~~-~~~~~~lvEe~I~G~E~sv~~l~d--g~~~~~~~~~~~~~~~~~---- 303 (519)
.| |+|+++++|.+|+....+.+....... ..-.+++|||||.|.+|+++++.+ .+.+..+...+++....|
T Consensus 163 sG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r 242 (366)
T PRK13277 163 KRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVR 242 (366)
T ss_pred CCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeeccccccccccc
Confidence 99 999999999999998877764311110 112466899999999999999976 333333333221111000
Q ss_pred --------CCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcC----CCeeeEEEEEEEEEcCCCceEEEEE
Q 010065 304 --------GDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEG----CKFVGVLYAGLMIEKKSGLPKLIEY 371 (519)
Q Consensus 304 --------~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g----~~~~G~~~vdf~~~~~g~~~~viEi 371 (519)
....+....+|+ .|.. +.+.+.+.+.+.+. ++..+++ -...|++++|+++++++ ++|++||
T Consensus 243 ~pa~~ql~~~~~p~~vv~G~-~p~t-~rEslle~v~e~ge----r~v~a~~~~~~pg~iGpf~lQ~iv~~d~-~~~V~EI 315 (366)
T PRK13277 243 LPAPQQLKLNEEPRYIEVGH-EPAT-IRESLLEKVFEIGE----KFVEATKELYPPGIIGPFTLQTIVTPDL-DFVVYDV 315 (366)
T ss_pred cChhhhhhcccCCceEEEcC-cccc-chHHHHHHHHHHHH----HHHHHhhhhcCcccccceEEEEEEcCCC-cEEEEEE
Confidence 011111222333 4555 66666677776654 3334433 12349999999999877 8999999
Q ss_pred eCCCCCCchHHHHHHhCCCHHHHHHH--HHhCC
Q 010065 372 NVRFGDPECQVLMVRLESDLAEVLLA--ACRGE 402 (519)
Q Consensus 372 N~R~G~~~~~~~~~~~G~d~~~~~i~--~~~g~ 402 (519)
|||+||+.. +...+|.|+..+++. +.+|+
T Consensus 316 npR~gGGtn--l~~~aGs~y~~l~~~~~ms~Gr 346 (366)
T PRK13277 316 APRIGGGTN--VYMGVGSPYSKLYFGKPMSTGR 346 (366)
T ss_pred cCCcCCCcc--ceeecCCCcHHHHhcCccccCC
Confidence 999977655 444469999999998 88887
No 73
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.4e-19 Score=178.42 Aligned_cols=229 Identities=19% Similarity=0.308 Sum_probs=164.2
Q ss_pred cCCcEEEE--C-CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHH-HHh
Q 010065 146 WSVGLVVV--G-PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYI-QEE 221 (519)
Q Consensus 146 ~~id~Vi~--g-~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~-~~~ 221 (519)
...|++++ + .-+. ...+++.+|..|++++ +++.++..|.||..+.+++...|+|+|++.++.+.++...+. +.+
T Consensus 77 ~~~D~i~~R~~~~~~~-~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~ 154 (318)
T COG0189 77 DELDVIIMRKDPPFDF-ATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHL 154 (318)
T ss_pred ccCCEEEEecCCchhh-HHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCHHHHHHHHHHhc
Confidence 36789998 2 2222 2356778999999999 999999999999999999999999999999999986665554 556
Q ss_pred CCCEEEEeCCCCCCCcEEEeCCHH-HHHHHHHHHHhhccCCCCCCcEEEEeccCC--cEEEEEEEEeCCeeEEe-ccccc
Q 010065 222 GAPIVVKADGLAAGKGVIVAMTLE-EAYEAVDSMLLKNAFGSAGCRVIIEEFLEG--EEASFFALVDGENAIPL-ESAQD 297 (519)
Q Consensus 222 g~P~VvKP~~g~gs~GV~~v~~~~-el~~a~~~~~~~~~~~~~~~~~lvEe~I~G--~E~sv~~l~dg~~~~~~-~~~~~ 297 (519)
|||+|+||.+|++|+||.++++.+ ++.+.++.+... ....+|+||||+- +..-.-++.++. +.+. +..+
T Consensus 155 g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~-----~~~~~ivQeyi~~~~~~~rrivv~~~~-~~~~y~~~R- 227 (318)
T COG0189 155 GFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQE-----GRKLIIVQEYIPKAKRDDRRVLVGGGE-VVAIYALAR- 227 (318)
T ss_pred CCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhcc-----ccceEehhhhcCcccCCcEEEEEeCCE-EeEEeeecc-
Confidence 799999999999999999999999 999888887531 2246999999985 344444444443 3322 2111
Q ss_pred cccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCC
Q 010065 298 HKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGD 377 (519)
Q Consensus 298 ~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~ 377 (519)
...--++....+.|+.. .|.+ ++++..+...+ +..++|+.+.| ||++.+++| .||+|||..|++
T Consensus 228 ~~~~~~~R~N~a~Gg~~--e~~~-l~~e~~elA~k--------aa~~lGl~~~G---VDiie~~~g--~~V~EVN~sP~~ 291 (318)
T COG0189 228 IPASGDFRSNLARGGRA--EPCE-LTEEEEELAVK--------AAPALGLGLVG---VDIIEDKDG--LYVTEVNVSPTG 291 (318)
T ss_pred ccCCCCceeeccccccc--cccC-CCHHHHHHHHH--------HHHHhCCeEEE---EEEEecCCC--cEEEEEeCCCcc
Confidence 11122334444555543 3555 77765544433 33677865544 999999888 999999998855
Q ss_pred CchHHHHHHhCCCHHHHHHHHHhC
Q 010065 378 PECQVLMVRLESDLAEVLLAACRG 401 (519)
Q Consensus 378 ~~~~~~~~~~G~d~~~~~i~~~~g 401 (519)
-. .+....|+|....+.+.+..
T Consensus 292 ~~--~i~~~~g~~~~~~~~~~ie~ 313 (318)
T COG0189 292 KG--EIERVTGVNIAGLIIDAIEK 313 (318)
T ss_pred cc--chhhhcCCchHHHHHHHHHH
Confidence 33 24445688998888877643
No 74
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.84 E-value=5.7e-21 Score=172.94 Aligned_cols=159 Identities=25% Similarity=0.312 Sum_probs=85.0
Q ss_pred hcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCC
Q 010065 185 EGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAG 264 (519)
Q Consensus 185 ~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~ 264 (519)
|.||.+++++|+++|||+|.+....... ...+|+|+||.+|+||.|++++++.+++.......
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~~-------~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~~---------- 63 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEPE-------PIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNKL---------- 63 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EESS---------SSSEEEEESS-------B--SS--TTE----------------
T ss_pred CCCHHHHHHHHHccCCCCCCcccccccc-------ccCCcEEEEeCCCCCCCCeEEECCchhhccccccc----------
Confidence 6899999999999999999433222211 23689999999999999999999998877654332
Q ss_pred CcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010065 265 CRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSA 344 (519)
Q Consensus 265 ~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a 344 (519)
.++||||+|.++|+.++.+++....+...+......+ ..+. -.+...|+. .+ ...++.+.+ .++..+
T Consensus 64 --~i~Qe~i~G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~--~~~~--~~G~~~~~~-~~--~~~~~~~~~----~~i~~~ 130 (161)
T PF02655_consen 64 --RIVQEFIEGEPYSVSFLASGGGARLLGVNRQLIGNDD--GRFR--YCGGIVPAD-TP--LKEEIIELA----RRIAEA 130 (161)
T ss_dssp ---EEEE---SEEEEEEEEE-SSSEEEEEEEEEEEET------TE--EEEEEES-------HHHHHHHHH----HHHHTT
T ss_pred --eEEeeeeCCEEeEEEEEEeCCceEEEEechHhhcccc--ceee--ecccccccC-Cc--hHHHHHHHH----HHHHHH
Confidence 2999999999999999987765555555544322211 1111 124556765 22 245555554 355577
Q ss_pred c-CCCeeeEEEEEEEEEcCCCceEEEEEeCCCCC
Q 010065 345 E-GCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGD 377 (519)
Q Consensus 345 ~-g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~ 377 (519)
+ |+. |++.|||++++++ +|+||||||+++
T Consensus 131 l~gl~--G~~giD~I~~~~~--~~viEINPR~t~ 160 (161)
T PF02655_consen 131 LPGLR--GYVGIDFILDDGG--PYVIEINPRFTG 160 (161)
T ss_dssp STT----EEEEEEEEESS-S--EEEEEEESS--G
T ss_pred cCCCe--eeEeEEEEEeCCc--EEEEEEcCCCCC
Confidence 7 766 9999999999866 999999999965
No 75
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.84 E-value=1.2e-19 Score=169.14 Aligned_cols=185 Identities=23% Similarity=0.348 Sum_probs=101.4
Q ss_pred hcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh-CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCC
Q 010065 185 EGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE-GAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSA 263 (519)
Q Consensus 185 ~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~-g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~ 263 (519)
+.||..+.++|+++|||+|++..+.+.+++.++++++ ++|+|+||..|+.|.||.++++.+++...++.... .
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~------~ 74 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKR------L 74 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH-----------
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHh------c
Confidence 4699999999999999999999999999999999999 89999999999999999999999999988776532 3
Q ss_pred CCcEEEEeccCC---cEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHH
Q 010065 264 GCRVIIEEFLEG---EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVK 340 (519)
Q Consensus 264 ~~~~lvEe~I~G---~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~ 340 (519)
...+++|+||+. +++.|.++ +|+ ++...... ..-.++....+.|+. ..|.. ++++..+.+. +
T Consensus 75 ~~~~~~Q~fI~~~~g~d~Rv~Vi-g~~-vv~a~~r~--~~~~d~r~n~~~g~~--~~~~~-l~~e~~~~a~--------~ 139 (190)
T PF08443_consen 75 ENPILVQEFIPKDGGRDLRVYVI-GGK-VVGAYRRS--SPEGDFRTNLSRGGK--VEPYD-LPEEIKELAL--------K 139 (190)
T ss_dssp TTT-EEEE----SS---EEEEEE-TTE-EEEEEE----------------------EE-----HHHHHHHH--------H
T ss_pred cCcceEeccccCCCCcEEEEEEE-CCE-EEEEEEEe--cCcccchhhhccCce--EEEec-CCHHHHHHHH--------H
Confidence 478899999985 47887666 444 44322111 111233333444443 34555 6665444333 4
Q ss_pred HHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHH
Q 010065 341 GMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAA 398 (519)
Q Consensus 341 ~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~ 398 (519)
+.+++|+.+ +.||++.++++ +||+|||+.||... +...+|+|+.+.+++.
T Consensus 140 ~~~~lgl~~---~giDi~~~~~~--~~v~EvN~~~~~~~---~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 140 AARALGLDF---AGIDILDTNDG--PYVLEVNPNPGFRG---IEEATGIDIAEEIAEY 189 (190)
T ss_dssp HHHHTT-SE---EEEEEEEETTE--EEEEEEETT---TT---HHHHH---HHHHHHHH
T ss_pred HHHHhCCCE---EEEEEEecCCC--eEEEEecCCchHhH---HHHHHCcCHHHHHHhh
Confidence 557888765 45997666655 99999999998743 3345799999998875
No 76
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.83 E-value=1.3e-18 Score=186.24 Aligned_cols=233 Identities=20% Similarity=0.244 Sum_probs=163.6
Q ss_pred HHHHHHHHHcCCcEEEECCChhhHHHHH-----HHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCH
Q 010065 137 DAVISFCRKWSVGLVVVGPEAPLVSGLA-----NKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDP 211 (519)
Q Consensus 137 ~~l~~~~~~~~id~Vi~g~E~~~~~~~a-----~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~ 211 (519)
+.|++.+++.++++++...|+..++ +. ..++. .+.- -+++.++.++.||..++++|+++|||+|++..+.+.
T Consensus 245 ~~Ii~~a~~~Gi~~~~~~se~~~~~-L~~g~~~~~~~~-s~~~-~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~ 321 (547)
T TIGR03103 245 RIIVDEARRRGIEVEVLDAEGGLFR-LSLGGRSIRCRE-SLSE-LTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNG 321 (547)
T ss_pred HHHHHHHHHcCCcEEEECCCCCEEE-ecCCceEEEEEe-ccCC-CCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH
Confidence 7899999999999999876665431 10 00000 1111 268899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCcEEE-eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeE
Q 010065 212 NAAKQYIQEEGAPIVVKADGLAAGKGVIV-AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAI 290 (519)
Q Consensus 212 ~~~~~~~~~~g~P~VvKP~~g~gs~GV~~-v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~ 290 (519)
+++.++++++| |+||||..|++|+||.+ +++.+++.++++.+.. .+..+|||+||+|.|+.+.++ +|+ ++
T Consensus 322 ~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~------~~~~vlvEe~i~G~d~Rv~Vi-gg~-vv 392 (547)
T TIGR03103 322 EAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQ------FCDRVLLERYVPGEDLRLVVI-DFE-VV 392 (547)
T ss_pred HHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHh------cCCcEEEEEeccCCeEEEEEE-CCE-EE
Confidence 99988888998 79999999999999997 9999999999998864 346899999999999999665 444 22
Q ss_pred Eecccccc---------------------cccc-----------------------------------CCCCCCCCCCce
Q 010065 291 PLESAQDH---------------------KRVG-----------------------------------DGDTGPNTGGMG 314 (519)
Q Consensus 291 ~~~~~~~~---------------------~~~~-----------------------------------~~~~~~~~g~~~ 314 (519)
.......- .... ......++|+..
T Consensus 393 aa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~ 472 (547)
T TIGR03103 393 AAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTI 472 (547)
T ss_pred EEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCee
Confidence 21110000 0000 012233455543
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEc-CCCceEEEEEeCCCCCCchHHHHHHhCCCHHH
Q 010065 315 AYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEK-KSGLPKLIEYNVRFGDPECQVLMVRLESDLAE 393 (519)
Q Consensus 315 ~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~-~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~ 393 (519)
.-+ ++++...+.+.| .++.+++|+++.| ||++.++ ++....|||+|.|||...+ -.-+..+
T Consensus 473 ~dv-----td~~~~~~~~~A----~~aa~~~gl~~~G---vD~i~~~~~~p~~~iiEvN~~Pgl~~h------~~~~~~~ 534 (547)
T TIGR03103 473 HDV-----TEQLHPDLREAA----ERAARALDIPVVG---IDFLVPDVTGPDYVIIEANERPGLANH------EPQPTAE 534 (547)
T ss_pred Eec-----ccccCHHHHHHH----HHHHHHhCCCeEE---EEEEeccCCCCCeEEEEecCCcccccc------CCCchHH
Confidence 332 233333444444 3466889988666 9999875 3313599999999988666 2346666
Q ss_pred HHHHHH
Q 010065 394 VLLAAC 399 (519)
Q Consensus 394 ~~i~~~ 399 (519)
.+++++
T Consensus 535 ~~~d~l 540 (547)
T TIGR03103 535 RFIDLL 540 (547)
T ss_pred HHHHHh
Confidence 666655
No 77
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=162.87 Aligned_cols=292 Identities=17% Similarity=0.104 Sum_probs=187.7
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC--cCCCC-CccccCCC--CCCHHHHHHHHHHcCCcEEEE--C--
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI--SNSGD-ATCIPDLD--VLDGDAVISFCRKWSVGLVVV--G-- 154 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~--~~~~~-~~~v~~~d--~~d~~~l~~~~~~~~id~Vi~--g-- 154 (519)
-|+|+|+.....++++.+..+ .+.+..+..+.+.. +.... .... ..+ ..-...|.+++.++...+.+. +
T Consensus 5 gviilGgahgtlalARSfg~~-~vpv~~ls~d~plPt~Sr~vr~t~~w-~gphd~gaiafLrd~Aekhglkg~LLva~GD 82 (415)
T COG3919 5 GVIILGGAHGTLALARSFGEE-FVPVLALSADGPLPTYSRIVRVTTHW-NGPHDEGAIAFLRDFAEKHGLKGYLLVACGD 82 (415)
T ss_pred ceEEEcccchhHHHHHhhccc-cceEEEEecCCCCcchhhhheeeecc-CCCCcccHHHHHHHHHhhcCcCceEEEecCC
Confidence 478898875555677777655 45555554332221 11110 0001 122 222778888888876554433 2
Q ss_pred CChhhHHHHHHHHH-HCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC
Q 010065 155 PEAPLVSGLANKLV-KAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA 233 (519)
Q Consensus 155 ~E~~~~~~~a~~le-~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~ 233 (519)
+|.-++....+.|. ...+| -++........+|-.+++.+.++|+|.|++..+++..+.. .+++-||+|+||..|+
T Consensus 83 gev~lvSq~reeLSa~f~v~--lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~v~S~~d~~--~~el~FPvILKP~mgg 158 (415)
T COG3919 83 GEVLLVSQYREELSAFFEVP--LPDWALLRWLCEKPLLYNRAEELGLPYPKTYLVNSEIDTL--VDELTFPVILKPGMGG 158 (415)
T ss_pred ceeeehHhhHHHHHHHhcCC--CCcHHHHHHHhhCcHHHHHHHHhCCCCcceEEecchhhhh--hhheeeeEEecCCCCC
Confidence 45544444444443 45777 4799999999999999999999999999999999765543 4678899999998877
Q ss_pred CC-----CcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-c--EEEEEEEEeCCeeEEeccccccccccCCC
Q 010065 234 AG-----KGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-E--EASFFALVDGENAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 234 gs-----~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~--E~sv~~l~dg~~~~~~~~~~~~~~~~~~~ 305 (519)
|- ..+..+.+.+|+..++..+..+ ...+.++|||||+| . .++..++.|.+.-+.....+. -+.+..+
T Consensus 159 ~~~~~araKa~~a~d~ee~k~a~~~a~ee----igpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr-~rqyPvd 233 (415)
T COG3919 159 SVHFEARAKAFTAADNEEMKLALHRAYEE----IGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARR-LRQYPVD 233 (415)
T ss_pred cceeehhhheeeccCHHHHHHHHHHHHHh----cCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcch-hhcCCcc
Confidence 42 2345678899999888877643 24588999999997 3 477777775542222222211 1222222
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHHHH
Q 010065 306 TGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMV 385 (519)
Q Consensus 306 ~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~~~ 385 (519)
.+| +.+....|- +..+++. + .+.+...+ ++|++.+||++|+.+|..+++||||||+.... +..
T Consensus 234 fgy--tst~vevvD---n~Q~i~a----a----r~~L~si~--htGlvevefK~D~RDGs~KlldvNpRpw~wfg--l~t 296 (415)
T COG3919 234 FGY--TSTVVEVVD---NQQVIQA----A----RDFLESIE--HTGLVEVEFKYDPRDGSYKLLDVNPRPWRWFG--LVT 296 (415)
T ss_pred ccc--ccEEEEecC---cHHHHHH----H----HHHHHhhc--ccceEEEEEEecCCCCceeEEeecCCCcceee--EEe
Confidence 222 122222221 2222222 2 34555555 56999999999987679999999999976432 334
Q ss_pred HhCCCHHHHHHHHHhCCC
Q 010065 386 RLESDLAEVLLAACRGEL 403 (519)
Q Consensus 386 ~~G~d~~~~~i~~~~g~~ 403 (519)
..|+|+-.++++...++.
T Consensus 297 aaG~nLg~~Lwa~~~~~~ 314 (415)
T COG3919 297 AAGYNLGRYLWADRINNE 314 (415)
T ss_pred cccccccceEEeeecCCc
Confidence 469999999988877763
No 78
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.81 E-value=4.7e-19 Score=162.79 Aligned_cols=210 Identities=22% Similarity=0.313 Sum_probs=155.9
Q ss_pred CCcEEE--ECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC
Q 010065 147 SVGLVV--VGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP 224 (519)
Q Consensus 147 ~id~Vi--~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P 224 (519)
++|+.+ ..-+++++..+.+..|+. +-.+|+++++++.|.||+++.+.|+.+ +++|++..+. ..+-.
T Consensus 73 ~~Da~LvIAPEdd~lLy~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~----------~~~~k 140 (307)
T COG1821 73 KADATLVIAPEDDGLLYSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTREWA----------EEPKK 140 (307)
T ss_pred cCCeeEEEecCcCChHHHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccccc----------cCCce
Confidence 556444 345566777888888887 677899999999999999999999999 9999976432 23456
Q ss_pred EEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccccccccCC
Q 010065 225 IVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDG 304 (519)
Q Consensus 225 ~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~~~~~~~~ 304 (519)
+|+||.+|+|+.|+.+..+..+ -.|+||||+|..+||. +.+|+.+.++..+++...+...
T Consensus 141 ~ViKp~dgCgge~i~~~~~~pd-------------------~~i~qEfIeG~~lSVS-L~~GEkv~pLsvNrQfi~~~~~ 200 (307)
T COG1821 141 YVIKPADGCGGEGILFGRDFPD-------------------IEIAQEFIEGEHLSVS-LSVGEKVLPLSVNRQFIIFAGS 200 (307)
T ss_pred EEecccccCCcceeeccCCCcc-------------------hhhHHHhcCCcceEEE-EecCCccccceechhhhhhccc
Confidence 9999999999999998776443 2678999999999999 6688888888777664333332
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCchHHH
Q 010065 305 DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAE-GCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVL 383 (519)
Q Consensus 305 ~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~~~~~ 383 (519)
..+|.-| +++ ++.++.+++.+.|++ +.... ||. |++.||+++. |+ ||+|||||||.-+.. .+
T Consensus 201 ~~~y~gg------~~p-i~he~k~~~~~~Ai~----aVeci~Gl~--GYVGVDlVls-D~--pYvIEINpR~TTp~v-g~ 263 (307)
T COG1821 201 ELVYNGG------RTP-IDHELKREAFEEAIR----AVECIPGLN--GYVGVDLVLS-DE--PYVIEINPRPTTPTV-GL 263 (307)
T ss_pred eeeeccC------cCC-CCcHHHHHHHHHHHH----HHHhhcccc--ceeeEEEEec-CC--cEEEEecCCCCccee-ee
Confidence 3333222 344 666888888887764 44444 576 9999999998 55 999999999955433 33
Q ss_pred HHHhCCCHHHHHHHHHhCCCCC
Q 010065 384 MVRLESDLAEVLLAACRGELTG 405 (519)
Q Consensus 384 ~~~~G~d~~~~~i~~~~g~~~~ 405 (519)
...++-++.++++.-..|++++
T Consensus 264 sr~~~~sv~~LLl~~~~g~~~~ 285 (307)
T COG1821 264 SRVTPESVAELLLEGPTGKVLR 285 (307)
T ss_pred eccccHHHHHHHhcCccccccc
Confidence 3445778888888877777543
No 79
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.81 E-value=8.7e-18 Score=185.61 Aligned_cols=143 Identities=22% Similarity=0.309 Sum_probs=117.7
Q ss_pred HHHHHHHHHHcCCcEEEECCChhh---HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHH
Q 010065 136 GDAVISFCRKWSVGLVVVGPEAPL---VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN 212 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~g~E~~~---~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~ 212 (519)
...|++.+++.++++...+..+.+ ....++..+..+.. +++..++.++.||..++++|+++|||+|++..+.+.+
T Consensus 162 t~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~~i~~~~~~--~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~~ 239 (727)
T PRK14016 162 TAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQRRIQAAETD--QTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSAE 239 (727)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCeEecCCcHHHHHHHHhcCC--CCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCHH
Confidence 468899999999988554321110 01123345555555 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCcEEE-eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCC
Q 010065 213 AAKQYIQEEGAPIVVKADGLAAGKGVIV-AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE 287 (519)
Q Consensus 213 ~~~~~~~~~g~P~VvKP~~g~gs~GV~~-v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~ 287 (519)
++.++++++|||+|+||..|++|+||++ +++.+|+.++++.+.. .+..+|||+||+|+||.+.++ +|+
T Consensus 240 ~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~------~~~~viVEe~I~G~d~Rv~Vv-gg~ 308 (727)
T PRK14016 240 DAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASK------ESSDVIVERYIPGKDHRLLVV-GGK 308 (727)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHH------hCCeEEEEEecCCceEEEEEE-CCE
Confidence 9999999999999999999999999998 9999999999988764 347899999999999998655 554
No 80
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.77 E-value=4.1e-17 Score=176.70 Aligned_cols=199 Identities=21% Similarity=0.248 Sum_probs=137.8
Q ss_pred cHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh-CCCEEEEeCCCCCCCcEEEeCC---HHHHHHHHHH
Q 010065 178 SSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE-GAPIVVKADGLAAGKGVIVAMT---LEEAYEAVDS 253 (519)
Q Consensus 178 ~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~-g~P~VvKP~~g~gs~GV~~v~~---~~el~~a~~~ 253 (519)
+..+..+++||..+|++|+++|||+|++..+.+.+++.+....+ ++|+||||.++++|+||.++.+ .+++.++++.
T Consensus 466 S~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~ 545 (737)
T TIGR01435 466 NYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNI 545 (737)
T ss_pred cHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHH
Confidence 45567899999999999999999999999999887777666666 6999999999999999999866 7899999988
Q ss_pred HHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccc-------------------cccc--cc-----------
Q 010065 254 MLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESA-------------------QDHK--RV----------- 301 (519)
Q Consensus 254 ~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~-------------------~~~~--~~----------- 301 (519)
++. .+..+|||+||+|+||+|.++ +++ ++++... .... +-
T Consensus 546 A~~------~~~~VLVEefI~G~EyRv~VI-g~k-vvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~ 617 (737)
T TIGR01435 546 AFS------EDSSVIIEEFLPGTEYRFFVL-NDK-VEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKIT 617 (737)
T ss_pred HHh------cCCeEEEEecccCCEEEEEEE-CCe-EEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCccccc
Confidence 764 457899999999999999877 444 2222110 0000 00
Q ss_pred ------------cCC--------------CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEE
Q 010065 302 ------------GDG--------------DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYA 355 (519)
Q Consensus 302 ------------~~~--------------~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~v 355 (519)
+.. ....++|+... + +++++.....+.| .++.+++|+++.| |
T Consensus 618 ~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~i----D-vTd~ihp~~~~lA----~~aa~algl~i~G---V 685 (737)
T TIGR01435 618 GPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSI----D-MTDEMDDSYKQIA----IRIATAVGAAICG---V 685 (737)
T ss_pred chHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceE----e-cccccCHHHHHHH----HHHHHhcCCCEEE---E
Confidence 000 00111222211 1 3344444555555 4566899988655 9
Q ss_pred EEEEEcCC-------CceEEEEEeCCCCCCchHHHHHHh--CCCHHHHHHHH
Q 010065 356 GLMIEKKS-------GLPKLIEYNVRFGDPECQVLMVRL--ESDLAEVLLAA 398 (519)
Q Consensus 356 df~~~~~g-------~~~~viEiN~R~G~~~~~~~~~~~--G~d~~~~~i~~ 398 (519)
|++..+-. ....+||+|.+||...+ .+|.. .-|+...++++
T Consensus 686 Dii~~di~~p~~~~~~~~~iiEvN~~P~l~mH--~~P~~G~~r~v~~~ild~ 735 (737)
T TIGR01435 686 DLIIPDETIPDTDKHAIWGVIEANFNPAMHMH--CFPYAGEKRRLTDKVIKF 735 (737)
T ss_pred EEEecCCCCCccccccceEEEEEcCCcchhhh--cCCCCCCCcchHHHHHHh
Confidence 99986321 12568999999988665 55655 44666666654
No 81
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.76 E-value=1.4e-16 Score=179.36 Aligned_cols=202 Identities=19% Similarity=0.285 Sum_probs=143.8
Q ss_pred CcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEE-eCCHHHHHHHHHHHH
Q 010065 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIV-AMTLEEAYEAVDSML 255 (519)
Q Consensus 177 ~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~-v~~~~el~~a~~~~~ 255 (519)
.+..+..+++||..++++|+++|||+|++..+.+.+++.++++++|||+|+||..+++|.||.+ +++.+|+.++++.+.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~ 282 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAV 282 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999998 999999999999886
Q ss_pred hhccCCCCCCcEEEEeccCCcEEEEEEEEeCCeeEEeccccc-c------------------c-c---------------
Q 010065 256 LKNAFGSAGCRVIIEEFLEGEEASFFALVDGENAIPLESAQD-H------------------K-R--------------- 300 (519)
Q Consensus 256 ~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~~~~~~~~~~~-~------------------~-~--------------- 300 (519)
. .+..+|||+||+|+||++.++ +|+ ++....... + . +
T Consensus 283 ~------~~~~vlVEefI~G~e~rvlVv-~~~-vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d 354 (864)
T TIGR02068 283 E------ESSGVIVERFITGRDHRLLVV-GGK-VVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLD 354 (864)
T ss_pred h------hCCcEEEEEeccCCEEEEEEE-CCE-EEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCC
Confidence 4 346899999999999998665 544 332211000 0 0 0
Q ss_pred ------------------------ccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEE
Q 010065 301 ------------------------VGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAG 356 (519)
Q Consensus 301 ------------------------~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vd 356 (519)
.+......++|+...-+... +.++ ..+.| .++.+++|+++.| ||
T Consensus 355 ~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~-i~~~----~~~~a----~~aa~~~gl~i~g---vD 422 (864)
T TIGR02068 355 STARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDE-IHPE----NAATA----VRAAKIIGLDIAG---VD 422 (864)
T ss_pred HHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccc-cCHH----HHHHH----HHHHHHhCCCeEE---EE
Confidence 00111222334333222222 4444 34433 2455788988666 99
Q ss_pred EEEEcCC-----CceEEEEEeCCCCCCchHHHHHHh--CCCHHHHHHHHHh
Q 010065 357 LMIEKKS-----GLPKLIEYNVRFGDPECQVLMVRL--ESDLAEVLLAACR 400 (519)
Q Consensus 357 f~~~~~g-----~~~~viEiN~R~G~~~~~~~~~~~--G~d~~~~~i~~~~ 400 (519)
++..+-. ....++|+|..||...+ ++|.. +.+....+++.+.
T Consensus 423 ~i~~di~~~~~~~~~~iiEvN~~p~~~~h--~~p~~g~~r~v~~~Il~~lf 471 (864)
T TIGR02068 423 IVTEDISRPLRDTDGAIVEVNAAPGLRMH--LAPSQGKPRNVARAIVDMLF 471 (864)
T ss_pred EEecCCCCCccccCcEEEEEcCCcchhhc--ccccCCCCeeHHHHHHHHhc
Confidence 9875311 12579999999988655 44443 6677777777665
No 82
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.75 E-value=1.3e-16 Score=175.56 Aligned_cols=241 Identities=19% Similarity=0.223 Sum_probs=156.4
Q ss_pred HHHHHHHHHHcCCcEEEECCChhhHHHHH----HHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCH
Q 010065 136 GDAVISFCRKWSVGLVVVGPEAPLVSGLA----NKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDP 211 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~g~E~~~~~~~a----~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~ 211 (519)
...+++.+.+.++.+.+...+..+++-.. +.+...+.+- ..+..+..++.||..++++|+++|||+|++..+.+.
T Consensus 434 T~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~~~~t~-~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~ 512 (752)
T PRK02471 434 TQILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNGNMTS-KDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSL 512 (752)
T ss_pred HHHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEeccccC-CCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCH
Confidence 45778888888888777754332221100 0001111221 134446677789999999999999999999999998
Q ss_pred HHHHHHHHHh-CCCEEEEeCCCCCCCcEEEe---CCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCC
Q 010065 212 NAAKQYIQEE-GAPIVVKADGLAAGKGVIVA---MTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE 287 (519)
Q Consensus 212 ~~~~~~~~~~-g~P~VvKP~~g~gs~GV~~v---~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~ 287 (519)
+++.+..+.+ |||+||||..+++|+||.++ ++.+++.++++.++. .+..+||||||+|+||+|.++ +|+
T Consensus 513 e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~------~~~~vlVEEfI~G~E~Rv~Vi-ggk 585 (752)
T PRK02471 513 EEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFR------EDSSVLVEEFIVGTEYRFFVL-DGK 585 (752)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHh------cCCcEEEEecccCCEEEEEEE-CCE
Confidence 8887766664 89999999999999999985 568999999988764 457899999999999999777 554
Q ss_pred eeEEeccc-------------------cccc--cc------------------------cCCC--------------CCC
Q 010065 288 NAIPLESA-------------------QDHK--RV------------------------GDGD--------------TGP 308 (519)
Q Consensus 288 ~~~~~~~~-------------------~~~~--~~------------------------~~~~--------------~~~ 308 (519)
++..... .... +- +..+ ...
T Consensus 586 -vvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~Nl 664 (752)
T PRK02471 586 -VEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNI 664 (752)
T ss_pred -EEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCcc
Confidence 2221110 0000 00 0000 011
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCC-----C--ceEEEEEeCCCCCCchH
Q 010065 309 NTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKS-----G--LPKLIEYNVRFGDPECQ 381 (519)
Q Consensus 309 ~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g-----~--~~~viEiN~R~G~~~~~ 381 (519)
++|+... + +++.+.....+.| .++.+++|+++.| ||++..+-. . ...+||+|.+||...+
T Consensus 665 stGg~~~----d-vtd~ih~~~~~lA----~~aa~~igl~~~G---vDii~~di~~p~~~~~~~~~IiEvN~~P~l~mH- 731 (752)
T PRK02471 665 STGGDSI----D-MTDDMDDSYKQIA----VKAAKALGAKICG---VDLIIPDLTQPASPEHPNYGIIELNFNPAMYMH- 731 (752)
T ss_pred CCCCeeE----e-cccccCHHHHHHH----HHHHHhcCCCEEE---EEEEeCCCcccccccCCCeEEEEecCCCchhhc-
Confidence 1222111 1 3344444555554 3566888988766 999986511 0 2688999999988665
Q ss_pred HHHHHh--CCCHHHHHHHHH
Q 010065 382 VLMVRL--ESDLAEVLLAAC 399 (519)
Q Consensus 382 ~~~~~~--G~d~~~~~i~~~ 399 (519)
++|.. ..|..+.+++++
T Consensus 732 -~~P~~G~~r~v~~~i~d~l 750 (752)
T PRK02471 732 -CFPYKGKGRRITPKILDKL 750 (752)
T ss_pred -cCccCCCCcchHHHHHHHh
Confidence 66666 446777776654
No 83
>PRK12458 glutathione synthetase; Provisional
Probab=99.73 E-value=1.2e-15 Score=154.34 Aligned_cols=204 Identities=17% Similarity=0.228 Sum_probs=140.3
Q ss_pred HHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC-EEEEeCCCCCCCcEEEeCCH
Q 010065 166 KLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP-IVVKADGLAAGKGVIVAMTL 244 (519)
Q Consensus 166 ~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P-~VvKP~~g~gs~GV~~v~~~ 244 (519)
.++..|++++ ++++++..+.||..+..+++ +++|++.+..+.+++.++++++++| +|+||..|.+|.||.++++.
T Consensus 109 ~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~ 184 (338)
T PRK12458 109 LAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTHISRNKEYIREFLEESPGDKMILKPLQGSGGQGVFLIEKS 184 (338)
T ss_pred HHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCHHHHHHHHHHcCCCeEEEEECCCCCccCeEEEecC
Confidence 3467799888 99999999999999976655 6889998888888998988888765 99999999999999999876
Q ss_pred HH--HHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEE-eCCeeE------EeccccccccccCCCCCCCCCCce
Q 010065 245 EE--AYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALV-DGENAI------PLESAQDHKRVGDGDTGPNTGGMG 314 (519)
Q Consensus 245 ~e--l~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~-dg~~~~------~~~~~~~~~~~~~~~~~~~~g~~~ 314 (519)
++ +...++... ....+|+|+||++ .+..+.++. +|+ ++ +.. .+. ....++....+.|+.
T Consensus 185 ~~~~~~~ile~~~-------~~~~~ivQeyI~~~~~gDiRv~vv~g~-~v~~~g~~~a~-~R~-~~~~d~RsN~~~Gg~- 253 (338)
T PRK12458 185 AQSNLNQILEFYS-------GDGYVIAQEYLPGAEEGDVRILLLNGE-PLERDGHYAAM-RRV-PAGGDVRSNVHAGGS- 253 (338)
T ss_pred ChhhHHHHHHHHh-------hCCCEEEEEcccCCCCCCEEEEEECCE-EEeeccceeEE-EEe-cCCCCeeecccCCCc-
Confidence 53 555555442 2358999999997 444444444 555 33 221 111 111233444455543
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCC-CCCCchHHHHHHhCCCHHH
Q 010065 315 AYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVR-FGDPECQVLMVRLESDLAE 393 (519)
Q Consensus 315 ~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R-~G~~~~~~~~~~~G~d~~~ 393 (519)
..+.+ ++++..+.+.+.+ .++...|+. ++.||++ + .+++|||++ ||+ . ..+...+|+|+.+
T Consensus 254 -~~~~~-l~~~~~~ia~~~~-----~~l~~~GL~---~~gVDli----~--~~l~EIN~~sp~g-~-~~~~~~~g~d~a~ 315 (338)
T PRK12458 254 -VVKHT-LTKEELELCEAIR-----PKLVRDGLF---FVGLDIV----G--DKLVEVNVFSPGG-L-TRINKLNKIDFVE 315 (338)
T ss_pred -ccCcC-CCHHHHHHHHHHH-----HHHhhcCCe---EEeEEEE----C--CEEEEEeCCCcch-H-HHHHHHhCCCHHH
Confidence 34555 7776655444432 334445665 4559997 3 479999997 544 2 2455667999999
Q ss_pred HHHHHHhCC
Q 010065 394 VLLAACRGE 402 (519)
Q Consensus 394 ~~i~~~~g~ 402 (519)
.+++.+...
T Consensus 316 ~i~~~i~~~ 324 (338)
T PRK12458 316 DIIEALERK 324 (338)
T ss_pred HHHHHHHHH
Confidence 999988655
No 84
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.68 E-value=8.5e-15 Score=145.52 Aligned_cols=205 Identities=12% Similarity=0.103 Sum_probs=133.3
Q ss_pred CCcEEEE--CCChhhHHHH-HHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcC-------CCCCCeeecCCHHHHH-
Q 010065 147 SVGLVVV--GPEAPLVSGL-ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYG-------IPTAKYKTFTDPNAAK- 215 (519)
Q Consensus 147 ~id~Vi~--g~E~~~~~~~-a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~G-------i~~p~~~~v~~~~~~~- 215 (519)
.+|+|+- .++.. .+.+ +..++..|++++ ++++++..+.||..|.++|.++| ||+|++.++.+.+.+.
T Consensus 66 pfDvilhK~~~~~~-~~~~~~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~ 143 (328)
T PLN02941 66 PFDVILHKLYGKEW-RQQLEEYREKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIP 143 (328)
T ss_pred CcCEEEEecCCHHH-HHHHHHHHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHH
Confidence 5688876 23321 2223 334567799998 99999999999999999999999 9999999999876533
Q ss_pred --HHHHHhCCCEEEEeCCC---CCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC--CcEEEEEEEEeCCe
Q 010065 216 --QYIQEEGAPIVVKADGL---AAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE--GEEASFFALVDGEN 288 (519)
Q Consensus 216 --~~~~~~g~P~VvKP~~g---~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~--G~E~sv~~l~dg~~ 288 (519)
...+.++||+|+||..+ +.|+++.++.++++|.. + ...+++||||+ |+.|-|.++ |+.
T Consensus 144 ~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~----l---------~~p~~lQEfVnh~g~d~RVfVv--Gd~ 208 (328)
T PLN02941 144 DAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSK----L---------EPPLVLQEFVNHGGVLFKVYVV--GDY 208 (328)
T ss_pred HHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHh----c---------CCcEEEEEecCCCCEEEEEEEE--CCE
Confidence 33567899999999988 77899999999988775 2 24699999995 688888777 443
Q ss_pred eEEeccccccc-cccCCCCCCCCC-------------Cc-eE---Ee--cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010065 289 AIPLESAQDHK-RVGDGDTGPNTG-------------GM-GA---YS--PAPVLTKELQSVVMESIILPTVKGMSAEGCK 348 (519)
Q Consensus 289 ~~~~~~~~~~~-~~~~~~~~~~~g-------------~~-~~---~~--P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~ 348 (519)
+..+ .+... .+...+.....| .. +. .- +.+ ++. .+++.+.+. ++-+++|+.
T Consensus 209 v~~~--~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~-~p~--~~~l~~La~----~~r~alGl~ 279 (328)
T PLN02941 209 VKCV--RRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAE-LPP--RPFLEDLAR----ELRRRLGLR 279 (328)
T ss_pred EEEE--EecCCccccccccccccccccccccccccccccccccccccccccc-CCC--hHHHHHHHH----HHHHHhCCc
Confidence 3211 11111 111001111101 00 00 00 111 111 122344432 344788875
Q ss_pred eeeEEEEEEEEEcCC-CceEEEEEeCCCCCCch
Q 010065 349 FVGVLYAGLMIEKKS-GLPKLIEYNVRFGDPEC 380 (519)
Q Consensus 349 ~~G~~~vdf~~~~~g-~~~~viEiN~R~G~~~~ 380 (519)
+++||++.+++. +.++|+|||..||....
T Consensus 280 ---l~GvDvI~~~~~~~~~~VidVN~fP~~k~~ 309 (328)
T PLN02941 280 ---LFNFDMIREHGTGDRYYVIDINYFPGYAKM 309 (328)
T ss_pred ---eEEEEEEeecCCCCceEEEEecCCCccccC
Confidence 455999998742 25999999999976443
No 85
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=99.66 E-value=3.7e-16 Score=126.58 Aligned_cols=99 Identities=52% Similarity=0.885 Sum_probs=83.3
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
|||||+|+|+|||+++|+|.++..++.+++.|+|+++.... ..+ .++..|.+.+.++|+++++|+|++|+|.++..+
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~v~~aPGN~G~~~~~--~~~-~~~~~d~~~l~~~a~~~~idlvvvGPE~pL~~G 77 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEEVYVAPGNPGTAELG--KNV-PIDITDPEELADFAKENKIDLVVVGPEAPLVAG 77 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEEEEEEE--TTGGGTS--EEE--S-TT-HHHHHHHHHHTTESEEEESSHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhc--eec-CCCCCCHHHHHHHHHHcCCCEEEECChHHHHHH
Confidence 79999999999999999999998888999999999987653 334 568899999999999999999999999999999
Q ss_pred HHHHHHHCCCCeeCCcHHHHHH
Q 010065 163 LANKLVKAGIPTFGPSSEAAAL 184 (519)
Q Consensus 163 ~a~~le~~gip~~g~~~~~~~~ 184 (519)
+++.|++.|+|++||+.+++++
T Consensus 78 l~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 78 LADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp HHHHHHHTT-CEES--HHHHHH
T ss_pred HHHHHHHCCCcEECcCHHHHhc
Confidence 9999999999999999988875
No 86
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.66 E-value=2.3e-14 Score=143.74 Aligned_cols=221 Identities=17% Similarity=0.177 Sum_probs=150.1
Q ss_pred CCcEEEECC-----Chh-hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHH
Q 010065 147 SVGLVVVGP-----EAP-LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQE 220 (519)
Q Consensus 147 ~id~Vi~g~-----E~~-~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~ 220 (519)
++|+|++-. +.. .-..+.+.+|..|++++ +++.++..+.||..+.+++. ++|++....+.+++.+++++
T Consensus 78 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~~~~~~~~~~ 152 (312)
T TIGR01380 78 ELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTLVTRDKAEIRAFLAE 152 (312)
T ss_pred cCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCHHHHHHHHHH
Confidence 589999821 111 11246777888999988 99999999999999877653 79999988899999999988
Q ss_pred hCCCEEEEeCCCCCCCcEEEeCC-HHHHHHHHHHHHhhccCCCCCCcEEEEeccC---CcEEEEEEEEeCCeeEEecccc
Q 010065 221 EGAPIVVKADGLAAGKGVIVAMT-LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE---GEEASFFALVDGENAIPLESAQ 296 (519)
Q Consensus 221 ~g~P~VvKP~~g~gs~GV~~v~~-~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~---G~E~sv~~l~dg~~~~~~~~~~ 296 (519)
.+ |+|+||..|++|.||.++++ ..++...++.... .....+++|+||+ +.++.+.++ +|+ ++.....+
T Consensus 153 ~g-~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~-----~~~~~~~vQ~yI~~~~~~D~Rv~vv-~g~-vv~~ai~R 224 (312)
T TIGR01380 153 HG-DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQ-----RGREPVMAQRYLPEIKEGDKRILLI-DGE-PIGAAVAR 224 (312)
T ss_pred cC-CEEEEECCCCCCceEEEEcCCCccHHHHHHHHHh-----ccCCcEEEEeccccccCCCEEEEEE-CCe-EEEEEEEe
Confidence 88 99999999999999999875 3334333332221 1235799999997 367877655 554 33212222
Q ss_pred ccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCC-C
Q 010065 297 DHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVR-F 375 (519)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R-~ 375 (519)
.. ...++....+.|+ ...|.+ ++++..+...+. ..++.++|+.|.| ||++ + .+|+|||.. |
T Consensus 225 ~~-~~gd~r~N~~~Gg--~~~~~~-l~~e~~~ia~~~-----~~~~~~~gl~~ag---VDii----g--~~v~EvN~~~p 286 (312)
T TIGR01380 225 IP-AGGEFRGNLAVGG--RGEATE-LSERDREICADV-----APELKRRGLLFVG---IDVI----G--GYLTEVNVTSP 286 (312)
T ss_pred cC-CCCCccccccCCc--eeeccC-CCHHHHHHHHHH-----HHHHHhcCCcEEE---EEEe----C--CEEEEEecCCc
Confidence 11 1113334445554 345666 777655433332 2445677876655 9998 4 579999986 4
Q ss_pred CCCchHHHHHHhCCCHHHHHHHHHh
Q 010065 376 GDPECQVLMVRLESDLAEVLLAACR 400 (519)
Q Consensus 376 G~~~~~~~~~~~G~d~~~~~i~~~~ 400 (519)
++ ...+...+|.|+.+.+++.+.
T Consensus 287 ~~--~~~~~~~~g~~ia~~i~d~l~ 309 (312)
T TIGR01380 287 TG--IREIDRQKGVNIAGMLWDAIE 309 (312)
T ss_pred ch--HHHHHhhhCCCHHHHHHHHHH
Confidence 32 234556689999999998764
No 87
>PRK05246 glutathione synthetase; Provisional
Probab=99.66 E-value=3.7e-14 Score=142.70 Aligned_cols=223 Identities=16% Similarity=0.189 Sum_probs=150.8
Q ss_pred CCcEEEEC--C---Ch-hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHH
Q 010065 147 SVGLVVVG--P---EA-PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQE 220 (519)
Q Consensus 147 ~id~Vi~g--~---E~-~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~ 220 (519)
.+|+|++- . +. .....+.+.++..|++++ +++.++..+.||..+.+++. ++|++....+.+++.+++++
T Consensus 79 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~~~~~~~~~~ 153 (316)
T PRK05246 79 DFDVILMRKDPPFDMEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTLVTRDKAEIRAFRAE 153 (316)
T ss_pred cCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEEEeCCHHHHHHHHHH
Confidence 48999983 1 11 112245667887899998 89999999999999988655 78999998899999999988
Q ss_pred hCCCEEEEeCCCCCCCcEEEeCC-HHHHHHHHHHHHhhccCCCCCCcEEEEeccCC---cEEEEEEEEeCCeeEEecccc
Q 010065 221 EGAPIVVKADGLAAGKGVIVAMT-LEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG---EEASFFALVDGENAIPLESAQ 296 (519)
Q Consensus 221 ~g~P~VvKP~~g~gs~GV~~v~~-~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G---~E~sv~~l~dg~~~~~~~~~~ 296 (519)
.+ |+|+||..|++|.||.++.. ..++...++.+.. .....+|+|+||+. .++.+.++ +|+ ++.....+
T Consensus 154 ~~-~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~-----~~~~~~lvQ~~I~~~~~~D~Rv~vv-~g~-vv~~a~~R 225 (316)
T PRK05246 154 HG-DIILKPLDGMGGAGIFRVKADDPNLGSILETLTE-----HGREPVMAQRYLPEIKEGDKRILLV-DGE-PVGYALAR 225 (316)
T ss_pred CC-CEEEEECCCCCccceEEEeCCCccHHHHHHHHHH-----ccCCeEEEEeccccCCCCCEEEEEE-CCE-EhhheeEe
Confidence 87 99999999999999999944 3444433333321 12468999999975 56776655 554 33311122
Q ss_pred ccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCC-C
Q 010065 297 DHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVR-F 375 (519)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R-~ 375 (519)
.. ...++.+..+.|+ ...|.+ ++++..+-..+ + .+.+..+|+.+ ++||++ + .||+|||.. |
T Consensus 226 ~~-~~~~~rtN~~~Gg--~~~~~~-l~~~~~~ia~~-~----~~~l~~~gl~~---~GVDli----~--~~l~EvN~~~p 287 (316)
T PRK05246 226 IP-AGGETRGNLAAGG--RGEATP-LTERDREICAA-I----GPELKERGLIF---VGIDVI----G--DYLTEINVTSP 287 (316)
T ss_pred cC-CCCCcccCccCCc--eEeccC-CCHHHHHHHHH-H----HHHHHHhCCCE---EEEEEe----C--CEEEEEeCCCc
Confidence 11 1123344455554 345666 77654433332 2 24556677765 459998 4 369999986 6
Q ss_pred CCCchHHHHHHhCCCHHHHHHHHHhCC
Q 010065 376 GDPECQVLMVRLESDLAEVLLAACRGE 402 (519)
Q Consensus 376 G~~~~~~~~~~~G~d~~~~~i~~~~g~ 402 (519)
++ ...+...+|+|+.+.+++.+...
T Consensus 288 ~~--~~~~~~~tg~~ia~~i~~~~~~~ 312 (316)
T PRK05246 288 TG--IREIERLTGVDIAGMLWDAIEAK 312 (316)
T ss_pred hH--HHHHHHHhCCCHHHHHHHHHHHH
Confidence 44 23566667999999999987654
No 88
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=99.60 E-value=5.2e-15 Score=119.96 Aligned_cols=93 Identities=55% Similarity=0.923 Sum_probs=77.1
Q ss_pred cEEEEEEecCCCCCCCCCCcccccchhhhccCCCeEEEEeeeeecCCCcEEecCCeEEEEEEecCCHHHHHHHHHHHhhc
Q 010065 414 SAMVVVMASKGYPGSYEKGSEIQNLEEAEQVAPSVKIFHAGTALDADGNFIATGGRVLGVTAKGKDVEEAQDRAYLAVEE 493 (519)
Q Consensus 414 ~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~rvg~vi~~g~t~~ea~~~a~~~~~~ 493 (519)
+++.++++++|||..+.++.+|.+... ..+++++||++... ..+.+.++++|+..|++.|+|.+||++++++.++.
T Consensus 1 A~v~vv~as~GYP~~~~~g~~I~~~~~---~~~~~~vf~agv~~-~~~~l~t~GGRvl~v~~~g~tl~eA~~~ay~~i~~ 76 (93)
T PF02843_consen 1 ASVGVVLASKGYPGSYEKGFPITGEEE---EPEGVHVFHAGVKK-EDGQLVTNGGRVLTVVALGDTLEEAREKAYEAIEK 76 (93)
T ss_dssp EEEEEEEEETTTTSS--SS-BEBSHHH---TSTTEEEEESSEEE-ETTEEEE-SSEEEEEEEEESSHHHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCcCCCCCCCCEEecCcc---CCCCCEEEEeEEEe-eCCEEEecCCeEEEEEEEcCCHHHHHHHHHHHHhc
Confidence 367889999999999988888887333 46789999999876 58999999999999999999999999999999999
Q ss_pred cccCCeeeccccccccc
Q 010065 494 INWPGGFYRRDIGWRAL 510 (519)
Q Consensus 494 i~~~g~~~r~dig~~~~ 510 (519)
|+++|.|||+|||.+.|
T Consensus 77 I~~~g~~yR~DIG~~al 93 (93)
T PF02843_consen 77 IDFPGMFYRKDIGHRAL 93 (93)
T ss_dssp SB-TTEE--STTTHHHH
T ss_pred cCCCCCEEcCccChhhC
Confidence 99999999999998765
No 89
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.54 E-value=1.3e-12 Score=129.14 Aligned_cols=211 Identities=17% Similarity=0.164 Sum_probs=123.1
Q ss_pred CcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh--CC-CEEEEeCCCCCCCcEEEeCCHHH-------
Q 010065 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE--GA-PIVVKADGLAAGKGVIVAMTLEE------- 246 (519)
Q Consensus 177 ~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~--g~-P~VvKP~~g~gs~GV~~v~~~~e------- 246 (519)
++.+...++.||..+..+|+++|||+|++..+.+.+...+.+.++ ++ |+|+||..|+.|+||.++++.++
T Consensus 27 N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~GrGI~~i~~~~~~~~~~~~ 106 (317)
T TIGR02291 27 NKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGKGILVITSRKDGRYRKPS 106 (317)
T ss_pred CCchhccccccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEECCCCCccCeEEEEecccccccccc
Confidence 566777889999999999999999999988777665332223333 45 69999999999999999966533
Q ss_pred --------HHHHHHHHHhhc-cCCCCCCcEEEEeccCC------------cEEEEEEEEeCCeeEEeccccccccccCCC
Q 010065 247 --------AYEAVDSMLLKN-AFGSAGCRVIIEEFLEG------------EEASFFALVDGENAIPLESAQDHKRVGDGD 305 (519)
Q Consensus 247 --------l~~a~~~~~~~~-~~~~~~~~~lvEe~I~G------------~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~ 305 (519)
+...+..+.... ......+.+++|+++.. +.+.|.++ +++.+..+ .+...+.-++.
T Consensus 107 ~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv-~~~~vaa~--~R~~~~~~~~~ 183 (317)
T TIGR02291 107 GATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVF-KGYPVMAM--MRLPTRASDGK 183 (317)
T ss_pred ccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEE-CCEEEEEE--EEccCccCCcc
Confidence 444333221100 00112234666555432 34455444 33322111 11111111223
Q ss_pred CCCCCCCceEEecC---------------CC----------CCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEE
Q 010065 306 TGPNTGGMGAYSPA---------------PV----------LTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIE 360 (519)
Q Consensus 306 ~~~~~g~~~~~~P~---------------~~----------l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~ 360 (519)
...+.|+...-+.. .. +.-...+++.+.| .++.+++++ |++++|++++
T Consensus 184 tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la----~~A~~~~g~---~~~GvDii~~ 256 (317)
T TIGR02291 184 ANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELA----ASCWELTGL---GYMGVDMVLD 256 (317)
T ss_pred cccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHH----HHHHHhcCC---CeEEEEEEEe
Confidence 34455554331110 00 1113334556655 456778775 6777999998
Q ss_pred cCCCceEEEEEeCCCCCCchHHHHHHhCCCHHHHHHHHHh
Q 010065 361 KKSGLPKLIEYNVRFGDPECQVLMVRLESDLAEVLLAACR 400 (519)
Q Consensus 361 ~~g~~~~viEiN~R~G~~~~~~~~~~~G~d~~~~~i~~~~ 400 (519)
+++ .++++|+|+.||++ . ......|++-.-..++..+
T Consensus 257 ~~~-g~~VlEVN~~Pg~t-~-~~a~~~Gl~~~~~~~~~~~ 293 (317)
T TIGR02291 257 KEE-GPLVLELNARPGLA-I-QIANGAGLLPRLKHIEARL 293 (317)
T ss_pred CCC-CEEEEEeCCCCCCC-H-HHHHHCCCcHHHHHHHHhh
Confidence 654 49999999999997 2 3444457766555555443
No 90
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.38 E-value=8.4e-11 Score=112.28 Aligned_cols=280 Identities=17% Similarity=0.179 Sum_probs=173.5
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCC-cCCCCC-ccccCCCCCCH--HHHHHHHHHcCCcEEEECCC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGI-SNSGDA-TCIPDLDVLDG--DAVISFCRKWSVGLVVVGPE 156 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~-~~~~~~-~~v~~~d~~d~--~~l~~~~~~~~id~Vi~g~E 156 (519)
+.+|..+|+.. ..++...++++ |.+++.+...- ... .....+ +.+..-+..|. +.+.+.+++.+ ..++|.+.
T Consensus 18 ~i~Iat~gSHS-aL~Il~GAK~E-GF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~~f~dil~~~iqe~L~~~n-~I~IP~gS 94 (361)
T COG1759 18 DITIATIGSHS-ALQILDGAKEE-GFRTIAVCQRGREKPYEKFPVADEVIIVDKFSDILNEEIQEELRELN-AIFIPHGS 94 (361)
T ss_pred ceEEEEeecch-HHHHhhhHHhc-CCcEEEEEecCccchHHhhchhheEEEechhHHHhhHHHHHHHHHcC-eEEecCCc
Confidence 45777788763 23456666655 99998886431 111 111111 22201112221 12233333333 23455333
Q ss_pred hhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 010065 157 APLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGK 236 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~ 236 (519)
-....++-....++-+|++|+ -...++..|...-+.+|+++||+.|+ .+.+++++ .-|+|||+...-|++
T Consensus 95 fv~Y~G~d~ie~~~~vP~fGn-R~lLrwE~~~~~~~~lLekAgi~~P~--~~~~PeeI-------dr~VIVK~pgAkggR 164 (361)
T COG1759 95 FVAYVGYDGIENEFEVPMFGN-RELLRWEEDRKLEYKLLEKAGLRIPK--KYKSPEEI-------DRPVIVKLPGAKGGR 164 (361)
T ss_pred eEEEecchhhhhcccCccccc-HhHhhhhcchhhHHHHHHHcCCCCCc--ccCChHHc-------CCceEEecCCccCCc
Confidence 222223322355678999975 56677777999999999999999998 56677664 459999999999999
Q ss_pred cEEEeCCHHHHHHHHHHHHhhccCCC-CCCcEEEEeccCCcEEEEEEEE---eCCeeEEeccccccccccCC--------
Q 010065 237 GVIVAMTLEEAYEAVDSMLLKNAFGS-AGCRVIIEEFLEGEEASFFALV---DGENAIPLESAQDHKRVGDG-------- 304 (519)
Q Consensus 237 GV~~v~~~~el~~a~~~~~~~~~~~~-~~~~~lvEe~I~G~E~sv~~l~---dg~~~~~~~~~~~~~~~~~~-------- 304 (519)
|-+++.|.+|+.+..+++...+.... .-..+.+||||-|..+....+. .+. +-.++..+++....|+
T Consensus 165 GyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G~~f~~~yFyS~i~~~-lEl~g~D~R~Esn~Dg~~RlPa~~ 243 (361)
T COG1759 165 GYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVGAPFYFHYFYSPIKDR-LELLGIDRRYESNLDGLVRLPAKD 243 (361)
T ss_pred eEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeeccceeeeeeeccccCc-eeEeeeeheeeccchhhccCCHHH
Confidence 99999999999999999876432211 1246899999999877777664 222 2222222222111111
Q ss_pred ----CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCC
Q 010065 305 ----DTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDP 378 (519)
Q Consensus 305 ----~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~ 378 (519)
+..+.....|+ .|.. +-+.+..++.+++.+.+..+-...+....|++.+|.+++++- ++++.|+.+|.+++
T Consensus 244 ql~l~~~ptyvv~Gn-~p~v-lRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~dl-~~vVfevS~Ri~gG 318 (361)
T COG1759 244 QLELNLEPTYVVVGN-IPVV-LRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDL-EFVVFEVSARIVGG 318 (361)
T ss_pred HhhcCCCceEEEECC-cchh-hHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecCCc-cEEEEEEeccccCC
Confidence 11122222232 2555 677777777777776555554555666679999999999987 89999999999443
No 91
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.34 E-value=1.2e-10 Score=113.62 Aligned_cols=192 Identities=22% Similarity=0.220 Sum_probs=127.7
Q ss_pred HHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcC-CC--CCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEe--
Q 010065 167 LVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYG-IP--TAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVA-- 241 (519)
Q Consensus 167 le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~G-i~--~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v-- 241 (519)
-+..|+|++.+ ...||+.+.+.|.+.. +. .|++..+.+.+++.+++++.+ -+++||..|+.|+||.++
T Consensus 4 k~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri~~ 76 (262)
T PF14398_consen 4 KKQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRIEK 76 (262)
T ss_pred HhcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEEEE
Confidence 35679999854 3589999999999864 43 489999999999999998876 599999999999999876
Q ss_pred --------------------CCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC-----CcEEEEEEEE--eCCe---eEE
Q 010065 242 --------------------MTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE-----GEEASFFALV--DGEN---AIP 291 (519)
Q Consensus 242 --------------------~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~-----G~E~sv~~l~--dg~~---~~~ 291 (519)
.+.+++...+.... ....+|||+.|+ |+.|.+-++. |+.. +..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~vtg 149 (262)
T PF14398_consen 77 KGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELL-------GKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQVTG 149 (262)
T ss_pred eCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhc-------CCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEEEE
Confidence 35677777777664 346999999996 6777777665 5432 222
Q ss_pred eccccccccccCCCCCCCCCCceEEecCC-CC-----CHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCc
Q 010065 292 LESAQDHKRVGDGDTGPNTGGMGAYSPAP-VL-----TKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGL 365 (519)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~g~~~~~~P~~-~l-----~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~ 365 (519)
+........ ...+..+.|+. ..|.. .+ .....+++.+.+...+...-...+.. .|-+.+|+-+|.+| +
T Consensus 150 ~~~Rva~~~--~ivTN~~~GG~--~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~-~gElGiDl~iD~~g-~ 223 (262)
T PF14398_consen 150 IVARVAKPG--SIVTNLSQGGT--ALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGH-LGELGIDLGIDKNG-K 223 (262)
T ss_pred EEEEEcCCC--CceeccCCCce--ecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCc-eeEEEEEEEEcCCC-C
Confidence 221111111 11222334433 22211 11 22345556665554333322334443 38899999999998 9
Q ss_pred eEEEEEeCCCCCC
Q 010065 366 PKLIEYNVRFGDP 378 (519)
Q Consensus 366 ~~viEiN~R~G~~ 378 (519)
+|+||+|++|+-.
T Consensus 224 iWliEvN~kP~~~ 236 (262)
T PF14398_consen 224 IWLIEVNSKPGKF 236 (262)
T ss_pred EEEEEEeCCCCcc
Confidence 9999999999753
No 92
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=99.23 E-value=2.8e-13 Score=115.34 Aligned_cols=100 Identities=21% Similarity=0.180 Sum_probs=56.8
Q ss_pred eeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC--CccccCCCC
Q 010065 56 FFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD--ATCIPDLDV 133 (519)
Q Consensus 56 ~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~--~~~v~~~d~ 133 (519)
|||+|||||.|+||+||+.||+++ ...|.+. +++++.+.-+..+.+.... .......+.
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v------------------~~~L~~~-~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~ 61 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNV------------------YEALDKE-KYEVIPIYIDKDGRWYLGEGPEEYLDNDDD 61 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHH------------------HHHSHTT-TEEEEEEEETTTSCEEEEHHHCSHHHTTTC
T ss_pred CeEEEEeccCchhHHHHHHHHHHH------------------HHHHhhh-cceEEEEeecCCCCEEEcccchhhcccCch
Confidence 899999999999999999999874 4444333 4444443322222111000 000000000
Q ss_pred CCH-----H-----HHHHHHHHcCCcEEEE-----CCChhhHHHHHHHHHHCCCCeeCC
Q 010065 134 LDG-----D-----AVISFCRKWSVGLVVV-----GPEAPLVSGLANKLVKAGIPTFGP 177 (519)
Q Consensus 134 ~d~-----~-----~l~~~~~~~~id~Vi~-----g~E~~~~~~~a~~le~~gip~~g~ 177 (519)
.+. . ..........+|+||| .+||+.+|++ |+.+|+||+|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~DvvFp~lHG~~GEDG~iQgl---le~~~iPYvG~ 117 (117)
T PF01820_consen 62 EEFSFKPLPEISASLIEKNEQKLEVDVVFPVLHGPNGEDGTIQGL---LELLGIPYVGC 117 (117)
T ss_dssp CCHEESSSCCEEEEETTESTTCTTCSEEEEECCSTTTSSSHHHHH---HHHTT-EBSSS
T ss_pred hhccccccccccccccccccccccCCEEEEeccCCCCcccHHHHH---HHHcCCCCcCC
Confidence 000 0 0000000457999999 3899999888 99999999985
No 93
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=99.11 E-value=1.7e-09 Score=112.08 Aligned_cols=101 Identities=31% Similarity=0.403 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC-CCEEEEeC----CCCCCCcEEEeCCHHHHHHHHHHHHhhcc--
Q 010065 187 SKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG-APIVVKAD----GLAAGKGVIVAMTLEEAYEAVDSMLLKNA-- 259 (519)
Q Consensus 187 dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g-~P~VvKP~----~g~gs~GV~~v~~~~el~~a~~~~~~~~~-- 259 (519)
+.+..|++|+++|||+|++..+++.+++.++++++| ||+|+||. ..+++-||.++.|.+|+.+++++++....
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~ 83 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVT 83 (386)
T ss_pred cHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceee
Confidence 467889999999999999999999999999999999 99999997 22333499999999999999988874211
Q ss_pred --C---CCCCCcEEEEeccC-CcEEEEEEEEeCC
Q 010065 260 --F---GSAGCRVIIEEFLE-GEEASFFALVDGE 287 (519)
Q Consensus 260 --~---~~~~~~~lvEe~I~-G~E~sv~~l~dg~ 287 (519)
+ +..-..++||+|++ |+|+.+.++.|..
T Consensus 84 ~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~ 117 (386)
T TIGR01016 84 NQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRS 117 (386)
T ss_pred cccCCCCCEeeEEEEEECccCCceEEEEEEEcCC
Confidence 0 01114699999999 6999999998753
No 94
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.07 E-value=4.7e-09 Score=95.06 Aligned_cols=146 Identities=21% Similarity=0.304 Sum_probs=84.8
Q ss_pred CCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCH-HHHHHHHHHHHhhccCCCCCCcEEEEeccCC-c--E
Q 010065 202 TAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTL-EEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-E--E 277 (519)
Q Consensus 202 ~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~-~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~--E 277 (519)
+|++.+..+.+++.++.++.+. +|+||..|.||.||.++... ..+...++.+.. .....+|+|+|++. . |
T Consensus 12 ~P~T~vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~-----~~~~~~mvQ~flp~i~~GD 85 (173)
T PF02955_consen 12 IPPTLVSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTK-----NGERPVMVQPFLPEIKEGD 85 (173)
T ss_dssp S--EEEES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTT-----TTTS-EEEEE--GGGGG-E
T ss_pred CcCEEEECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHh-----cCCccEEEEeccccccCCC
Confidence 4888888899999999999988 99999999999999998774 445555555533 13467999999996 2 6
Q ss_pred EEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEE
Q 010065 278 ASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGL 357 (519)
Q Consensus 278 ~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf 357 (519)
.++-++ ||+.+.+ ..+.....|+......|+..... . ++++..+..++. ...|...|+.|.| +|+
T Consensus 86 kRii~~-nG~~~~a---v~R~P~~gd~R~N~~~Gg~~~~~--~-lt~~e~~i~~~i-----~~~L~~~Gl~f~G---iDv 150 (173)
T PF02955_consen 86 KRIILF-NGEPSHA---VRRIPAKGDFRSNLAAGGSAEPA--E-LTEREREICEQI-----GPKLREDGLLFVG---IDV 150 (173)
T ss_dssp EEEEEE-TTEE-SE---EEEE--SS-S---GGGTSCEEEE--E---HHHHHHHHHH-----HHHHHHTT--EEE---EEE
T ss_pred EEEEEE-CCEEhHH---eecCCCCCCceeeeccCCceeec--C-CCHHHHHHHHHH-----HHHHhhcCcEEEE---Eec
Confidence 666544 7763222 22222233445555667665443 3 666655544442 3566778887766 998
Q ss_pred EEEcCCCceEEEEEeCC
Q 010065 358 MIEKKSGLPKLIEYNVR 374 (519)
Q Consensus 358 ~~~~~g~~~~viEiN~R 374 (519)
+ | -|+.|||.-
T Consensus 151 i----g--~~l~EiNvt 161 (173)
T PF02955_consen 151 I----G--DKLTEINVT 161 (173)
T ss_dssp E----T--TEEEEEE-S
T ss_pred c----c--cceEEEecc
Confidence 7 3 389999986
No 95
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=99.06 E-value=2.6e-08 Score=98.40 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=67.4
Q ss_pred CcHHHHHHhcCHHHHHHHHHHcCCCCCCeee-----------cCCHHHHHHHHHHh-CCCEEEEeCCCCCCCcEEEeCCH
Q 010065 177 PSSEAAALEGSKNFMKNLCDKYGIPTAKYKT-----------FTDPNAAKQYIQEE-GAPIVVKADGLAAGKGVIVAMTL 244 (519)
Q Consensus 177 ~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~-----------v~~~~~~~~~~~~~-g~P~VvKP~~g~gs~GV~~v~~~ 244 (519)
++.+...++.||..+++++.++|||+|+... ..+.+++.+++... ..++|+||+.|++|.||.+++..
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 6677888999999999999999999999321 13456777777664 47999999999999999998655
Q ss_pred H------HHHHHHHHHHhhccCCCCCCcEEEEeccC
Q 010065 245 E------EAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274 (519)
Q Consensus 245 ~------el~~a~~~~~~~~~~~~~~~~~lvEe~I~ 274 (519)
+ +.......+.. .....+||||+|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~-----~~~~~~liqe~i~ 126 (285)
T PF14397_consen 96 DGSEINRDISALYAGLES-----LGGKDYLIQERIE 126 (285)
T ss_pred cCcccccchhHHHHHHHh-----cCCccEEEEeccc
Confidence 4 11111121111 0112899999996
No 96
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.95 E-value=3.4e-08 Score=97.24 Aligned_cols=208 Identities=13% Similarity=0.138 Sum_probs=117.0
Q ss_pred CCcEEEE-CCChhhHHHHHHHHHHC-CCCeeCCcHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeecC-CHHHHHH
Q 010065 147 SVGLVVV-GPEAPLVSGLANKLVKA-GIPTFGPSSEAAALEGSKNFMKNLCDKY-------GIPTAKYKTFT-DPNAAKQ 216 (519)
Q Consensus 147 ~id~Vi~-g~E~~~~~~~a~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gi~~p~~~~v~-~~~~~~~ 216 (519)
.+|+|+- -.+....+.+.+..+++ +++++ -+++++....|+..|.+++.+. .+.+|++..+. +.+++.+
T Consensus 52 pfDvIlHKltd~~~~~~l~~y~~~hP~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~ 130 (307)
T PF05770_consen 52 PFDVILHKLTDEDWVQQLEEYIKKHPEVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPE 130 (307)
T ss_dssp -SCEEEE--CHCHHHHHHHHHHHH-TTSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHH
Confidence 4687776 33344455666666654 67777 7899999999999999988875 67889999987 3333444
Q ss_pred HH--HHhCCCEEEEeCC--CC-CCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC--CcEEEEEEEEeCCee
Q 010065 217 YI--QEEGAPIVVKADG--LA-AGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE--GEEASFFALVDGENA 289 (519)
Q Consensus 217 ~~--~~~g~P~VvKP~~--g~-gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~--G~E~sv~~l~dg~~~ 289 (519)
.. +.+.||+|+||.. |+ .|..+.++.+++.|.+. ..++++||||. |.-|-|.++ |+.+
T Consensus 131 ~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVv--Gd~v 195 (307)
T PF05770_consen 131 LLKEAGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVV--GDKV 195 (307)
T ss_dssp HHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEE--TTEE
T ss_pred HHHHCCCcccEEeeehhhcCCccceEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEe--cCEE
Confidence 43 3466999999964 43 56789999999988641 36899999998 578888777 4433
Q ss_pred EEecc-----c---c--ccccccCCC--CCCCCCCce-EEe--c--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeE
Q 010065 290 IPLES-----A---Q--DHKRVGDGD--TGPNTGGMG-AYS--P--APVLTKELQSVVMESIILPTVKGMSAEGCKFVGV 352 (519)
Q Consensus 290 ~~~~~-----~---~--~~~~~~~~~--~~~~~g~~~-~~~--P--~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~ 352 (519)
..... . . ....++++. .+....... ..- + ....+.+..+++.+. .-+++|+. +
T Consensus 196 ~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~-------LR~~lgL~---L 265 (307)
T PF05770_consen 196 FVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKE-------LRRALGLT---L 265 (307)
T ss_dssp EEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHH-------HHHHHT-S---E
T ss_pred EEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHH-------HHHHhCcc---e
Confidence 22110 0 0 000111111 011110000 000 1 111123333332222 22678876 4
Q ss_pred EEEEEEEEcCC-CceEEEEEeCCCCCCch
Q 010065 353 LYAGLMIEKKS-GLPKLIEYNVRFGDPEC 380 (519)
Q Consensus 353 ~~vdf~~~~~g-~~~~viEiN~R~G~~~~ 380 (519)
+++|++++.++ +++++|.||.-||....
T Consensus 266 FgfDvI~~~~t~~~~~VIDINyFPgY~~v 294 (307)
T PF05770_consen 266 FGFDVIRENGTGGRYYVIDINYFPGYKKV 294 (307)
T ss_dssp EEEEEEEGCCT-SSEEEEEEEES--TTTS
T ss_pred eeeEEEEEcCCCCcEEEEEeccCCCccCC
Confidence 55999998766 68999999999987544
No 97
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.92 E-value=9.6e-09 Score=106.49 Aligned_cols=101 Identities=31% Similarity=0.329 Sum_probs=83.9
Q ss_pred cCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh-CCCEEEEeCCCCCCC----cEEEeCCHHHHHHHHHHHHhhcc-
Q 010065 186 GSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE-GAPIVVKADGLAAGK----GVIVAMTLEEAYEAVDSMLLKNA- 259 (519)
Q Consensus 186 ~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~-g~P~VvKP~~g~gs~----GV~~v~~~~el~~a~~~~~~~~~- 259 (519)
.+++.+|++|+++|||+|++..+++.+++.++++++ +||+|+||....+++ ||.+..+.+|+.+++++++....
T Consensus 3 l~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~ 82 (388)
T PRK00696 3 LHEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLV 82 (388)
T ss_pred CCHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhcccee
Confidence 367889999999999999999999999999999999 999999997433333 99999999999999998874311
Q ss_pred ------CCCCCCcEEEEeccC-CcEEEEEEEEeC
Q 010065 260 ------FGSAGCRVIIEEFLE-GEEASFFALVDG 286 (519)
Q Consensus 260 ------~~~~~~~~lvEe~I~-G~E~sv~~l~dg 286 (519)
.+..-..++||++++ |.|+.+.+..|.
T Consensus 83 ~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~ 116 (388)
T PRK00696 83 THQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDR 116 (388)
T ss_pred eeccCCCCCEEeEEEEEeccCCCceEEEEEEEcC
Confidence 111123599999999 699999999875
No 98
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=98.62 E-value=2e-06 Score=82.74 Aligned_cols=184 Identities=15% Similarity=0.163 Sum_probs=110.7
Q ss_pred HHHhcCHHHHHHHHHHcC---CCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCC---HHHHHHHHHHHH
Q 010065 182 AALEGSKNFMKNLCDKYG---IPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMT---LEEAYEAVDSML 255 (519)
Q Consensus 182 ~~~~~dK~~~k~~l~~~G---i~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~---~~el~~a~~~~~ 255 (519)
...+.||...|+.+++.+ .-+|-..+.++.+++. .+.+.-++|+||.+|+|+..|....+ .+++...+...+
T Consensus 15 ~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~~~i~--~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~~wl 92 (239)
T PF14305_consen 15 FTKLADKYAVREYVEEKIGEEYLPPLLGVYDNPDDID--FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLNRWL 92 (239)
T ss_pred ceecchHHHHHHHHHHhCCCceECceeecCCChhhhh--hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHHHHh
Confidence 456899999999999987 3445555566766654 25677889999999999888877654 344444444333
Q ss_pred hhc--------cCCCCCCcEEEEeccCC------cEEEEEEEEeCCeeE-Eecccc---ccccccCCCCCCCCCCceEEe
Q 010065 256 LKN--------AFGSAGCRVIIEEFLEG------EEASFFALVDGENAI-PLESAQ---DHKRVGDGDTGPNTGGMGAYS 317 (519)
Q Consensus 256 ~~~--------~~~~~~~~~lvEe~I~G------~E~sv~~l~dg~~~~-~~~~~~---~~~~~~~~~~~~~~g~~~~~~ 317 (519)
+.. .|..-.+.+|||++|+- .+|-+.++ +|+..+ .+...+ ....+|+.+.....-....-.
T Consensus 93 ~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF-~G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~~~~~~ 171 (239)
T PF14305_consen 93 KKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCF-NGKPKFIQVDSDRFGNHKRNFYDRDWNRLPFRSDYPP 171 (239)
T ss_pred hhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEE-CCEEEEEEEEeCCCCCeEEEEECcccCCCccccCCCC
Confidence 221 12233578999999973 36777666 675322 222221 111344433322111100001
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCCc
Q 010065 318 PAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPE 379 (519)
Q Consensus 318 P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~~ 379 (519)
....--++..++|.+.|.+ .+.+ + .++||||...+++ +||-|+...||++.
T Consensus 172 ~~~~~kP~~l~emi~iA~~------Ls~~--f-~fvRVDlY~~~~~--iyFGElTf~p~~G~ 222 (239)
T PF14305_consen 172 DEDIPKPKNLEEMIEIAEK------LSKG--F-PFVRVDLYNVDGK--IYFGELTFTPGAGF 222 (239)
T ss_pred CCCCCCChhHHHHHHHHHH------HccC--C-CEEEEEEEEeCCc--EEEEeeecCCCCcC
Confidence 1111234455666666632 3344 4 5789999988776 99999999997753
No 99
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.52 E-value=2.3e-06 Score=81.08 Aligned_cols=102 Identities=25% Similarity=0.244 Sum_probs=68.8
Q ss_pred cCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC-----CCCcEEE-eCCHHHHHHHHHHHHhhcc
Q 010065 186 GSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA-----AGKGVIV-AMTLEEAYEAVDSMLLKNA 259 (519)
Q Consensus 186 ~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~-----gs~GV~~-v~~~~el~~a~~~~~~~~~ 259 (519)
.+-...+++|+.+||++|++..+++.+++.++++++|||+++|-.... -.-||.+ ++|.+++.++++++...-.
T Consensus 10 L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~~ 89 (222)
T PF13549_consen 10 LTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERVA 89 (222)
T ss_dssp E-HHHHHHHHHTTT------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999986432 1237888 8999999999998874311
Q ss_pred ---CCCCCCcEEEEeccC--CcEEEEEEEEeCC
Q 010065 260 ---FGSAGCRVIIEEFLE--GEEASFFALVDGE 287 (519)
Q Consensus 260 ---~~~~~~~~lvEe~I~--G~E~sv~~l~dg~ 287 (519)
-......++||+.++ |.|+.+.+..|..
T Consensus 90 ~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~ 122 (222)
T PF13549_consen 90 AHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQ 122 (222)
T ss_dssp HH-TT----EEEEEE------EEEEEEEEEETT
T ss_pred HhCCCCccceEEEEEcccCCcEEEEEEEEECCC
Confidence 111236899999999 7999999998853
No 100
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.42 E-value=2.7e-06 Score=84.66 Aligned_cols=100 Identities=34% Similarity=0.423 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC-CCEEEEeCCCCCC----CcEEEeCCHHHHHHHHHHHHh----hc
Q 010065 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG-APIVVKADGLAAG----KGVIVAMTLEEAYEAVDSMLL----KN 258 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g-~P~VvKP~~g~gs----~GV~~v~~~~el~~a~~~~~~----~~ 258 (519)
-+..|++|+++|||+|+..++.+++++.++++++| .|+|||+---.|+ -||+++.|.+|+.++.++++. ..
T Consensus 5 EYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~ 84 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTD 84 (387)
T ss_pred HHHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccC
Confidence 46789999999999999999999999999999998 8999999533333 389999999999999999986 33
Q ss_pred cCCCCCCcEEEEeccC-Cc-EEEEEEEEeCC
Q 010065 259 AFGSAGCRVIIEEFLE-GE-EASFFALVDGE 287 (519)
Q Consensus 259 ~~~~~~~~~lvEe~I~-G~-E~sv~~l~dg~ 287 (519)
..+..-..++||+.++ -. ||-+.++.|..
T Consensus 85 ~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~ 115 (387)
T COG0045 85 IKGEPVNKVLVEEAVDIIKKEYYLSIVLDRS 115 (387)
T ss_pred cCCceeeEEEEEecCCCccceEEEEEEEEcC
Confidence 3333457899999999 44 99999998654
No 101
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=98.41 E-value=1.3e-06 Score=81.38 Aligned_cols=100 Identities=39% Similarity=0.503 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCC-CEEEEeCCCCCCC----cEEEeCCHHHHHHHHHHHHhhccC--
Q 010065 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGA-PIVVKADGLAAGK----GVIVAMTLEEAYEAVDSMLLKNAF-- 260 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~-P~VvKP~~g~gs~----GV~~v~~~~el~~a~~~~~~~~~~-- 260 (519)
.+..|++|+++|||+|++.++++++++.++++.++. ++||||---.|++ ||.+++|++|+.++..+++...-.
T Consensus 4 EyqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~ 83 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGVVATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTK 83 (202)
T ss_dssp HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-T
T ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEee
Confidence 467899999999999999999999999999999986 5799996444443 799999999999999988743211
Q ss_pred -----CCCCCcEEEEeccCC-cEEEEEEEEeCC
Q 010065 261 -----GSAGCRVIIEEFLEG-EEASFFALVDGE 287 (519)
Q Consensus 261 -----~~~~~~~lvEe~I~G-~E~sv~~l~dg~ 287 (519)
+..-..++|||+++= +|+-+.+..|..
T Consensus 84 Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~ 116 (202)
T PF08442_consen 84 QTGPKGEKVNKVLVEEFVDIKREYYLSITLDRE 116 (202)
T ss_dssp TSTTTEEEE--EEEEE---CCEEEEEEEEEETT
T ss_pred ecCCCCCEeeEEEEEecCccCceEEEEEEeccC
Confidence 112357899999997 899999888754
No 102
>PLN02235 ATP citrate (pro-S)-lyase
Probab=98.19 E-value=1.7e-05 Score=81.03 Aligned_cols=99 Identities=21% Similarity=0.181 Sum_probs=79.1
Q ss_pred HHHHHHHHHHc-----CCCCCCeeec-CCHHHHHHHHHH---hCCC-EEEEeCCCCCCC----cEEEeCCHHHHHHHHHH
Q 010065 188 KNFMKNLCDKY-----GIPTAKYKTF-TDPNAAKQYIQE---EGAP-IVVKADGLAAGK----GVIVAMTLEEAYEAVDS 253 (519)
Q Consensus 188 K~~~k~~l~~~-----Gi~~p~~~~v-~~~~~~~~~~~~---~g~P-~VvKP~~g~gs~----GV~~v~~~~el~~a~~~ 253 (519)
-+..|++|+++ |||+|+..++ ++.+++.+++++ ++.| +||||---.|++ ||.+++|.+|+.++.++
T Consensus 8 EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~ 87 (423)
T PLN02235 8 EYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKE 87 (423)
T ss_pred HHHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHH
Confidence 35668888888 9999999888 999999988887 7764 699996555554 69999999999999999
Q ss_pred HHhhcc-----CCCCCCcEEEEeccCC-cEEEEEEEEeCC
Q 010065 254 MLLKNA-----FGSAGCRVIIEEFLEG-EEASFFALVDGE 287 (519)
Q Consensus 254 ~~~~~~-----~~~~~~~~lvEe~I~G-~E~sv~~l~dg~ 287 (519)
++...- -+ .-..++||++++= +||-+.++.|..
T Consensus 88 ~Lg~~l~t~g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~ 126 (423)
T PLN02235 88 RLGKEVEMGGCKG-PITTFIVEPFVPHDQEFYLSIVSDRL 126 (423)
T ss_pred HhCCceEecCCCc-cEeEEEEEecCCCcceEEEEEEEecC
Confidence 885421 11 2247899999987 999999988654
No 103
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.17 E-value=1.9e-05 Score=81.63 Aligned_cols=99 Identities=23% Similarity=0.188 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC-EEEEeCCC----CCCCcEEEeCCHHHHHHHHHHHHhhcc---
Q 010065 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP-IVVKADGL----AAGKGVIVAMTLEEAYEAVDSMLLKNA--- 259 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P-~VvKP~~g----~gs~GV~~v~~~~el~~a~~~~~~~~~--- 259 (519)
-+..|++|+++|||+|++..+++.+++.++++++|+| +|+|..-. +-+-||.+..|.+|+.+++++++....
T Consensus 5 E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~ 84 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTH 84 (392)
T ss_pred HHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhh
Confidence 4677899999999999999999999999999999995 59997322 223489999999999999999875311
Q ss_pred ----CCCCCCcEEEEeccCC-cEEEEEEEEeC
Q 010065 260 ----FGSAGCRVIIEEFLEG-EEASFFALVDG 286 (519)
Q Consensus 260 ----~~~~~~~~lvEe~I~G-~E~sv~~l~dg 286 (519)
.+..-..++||+++++ +|+.+.+..|.
T Consensus 85 ~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~ 116 (392)
T PRK14046 85 QTGPEGKPVQRVYVETADPIERELYLGFVLDR 116 (392)
T ss_pred ccCCCCCeeeeEEEEEecCCCcEEEEEEEECC
Confidence 1112357999999995 99999999874
No 104
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=98.07 E-value=4.1e-06 Score=70.22 Aligned_cols=95 Identities=25% Similarity=0.268 Sum_probs=66.9
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcC-CCCCccccCC--------CCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISN-SGDATCIPDL--------DVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~~~~~v~~~--------d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+||||+|.|.....+++.+++. |++++.+..+....+. ...++.. +. ...+.+.++++++++++|+++|
T Consensus 3 kkvLIanrGeia~r~~ra~r~~-Gi~tv~v~s~~d~~s~~~~~ad~~-~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~p 80 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALREL-GIETVAVNSNPDTVSTHVDMADEA-YFEPPGPSPESYLNIEAIIDIARKEGADAIHP 80 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHT-TSEEEEEEEGGGTTGHHHHHSSEE-EEEESSSGGGTTTSHHHHHHHHHHTTESEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHh-CCcceeccCchhcccccccccccc-eecCcchhhhhhccHHHHhhHhhhhcCccccc
Confidence 6899999997777778888877 9999998754221111 0111111 11 2367999999999999999999
Q ss_pred C----CChhhHHHHHHHHHHCCCCeeCCcHHHH
Q 010065 154 G----PEAPLVSGLANKLVKAGIPTFGPSSEAA 182 (519)
Q Consensus 154 g----~E~~~~~~~a~~le~~gip~~g~~~~~~ 182 (519)
| .|+. .+++.+++.|+.++||+++++
T Consensus 81 Gyg~lse~~---~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 81 GYGFLSENA---EFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp TSSTTTTHH---HHHHHHHHTT-EESSS-HHHH
T ss_pred ccchhHHHH---HHHHHHHHCCCEEECcChHhC
Confidence 6 5665 567778999999999998864
No 105
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.06 E-value=3.4e-05 Score=79.92 Aligned_cols=100 Identities=25% Similarity=0.262 Sum_probs=76.4
Q ss_pred cCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHh---CCCEEEEeCCCCCC-----------CcEEEeCCHHHHHHHH
Q 010065 186 GSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEE---GAPIVVKADGLAAG-----------KGVIVAMTLEEAYEAV 251 (519)
Q Consensus 186 ~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~---g~P~VvKP~~g~gs-----------~GV~~v~~~~el~~a~ 251 (519)
..-+..|++|+++|||+|++.++.+.+++.++++++ ++|+|+|+.--.|+ -||.++++ +|+.+++
T Consensus 30 l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~aa 108 (422)
T PLN00124 30 IHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEELA 108 (422)
T ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHHH
Confidence 457788999999999999999999999999988888 69999999733333 34777766 9999999
Q ss_pred HHHHhhcc-------CCCCCCcEEEEeccC-CcEEEEEEEEeC
Q 010065 252 DSMLLKNA-------FGSAGCRVIIEEFLE-GEEASFFALVDG 286 (519)
Q Consensus 252 ~~~~~~~~-------~~~~~~~~lvEe~I~-G~E~sv~~l~dg 286 (519)
++++.... -+..-..++|||.+. ++|+-+.+..|.
T Consensus 109 ~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr 151 (422)
T PLN00124 109 GKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDR 151 (422)
T ss_pred HHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEecc
Confidence 99875311 111223577555555 699999999875
No 106
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.71 E-value=0.0043 Score=56.36 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=92.1
Q ss_pred cHHHHHHhcCHHHHHH----HHHHcC---CCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHH
Q 010065 178 SSEAAALEGSKNFMKN----LCDKYG---IPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEA 250 (519)
Q Consensus 178 ~~~~~~~~~dK~~~k~----~l~~~G---i~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a 250 (519)
+..++-.+.||..... +.+++| +|-.+.....+..+.. ....||+|||--...+|.|-.+++|..++.+.
T Consensus 2 SL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~em~---s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi 78 (203)
T PF02750_consen 2 SLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHREML---SAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDI 78 (203)
T ss_dssp -HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGGGGC---S-SSSSEEEEESS-STTTTEEEE-SHHHHHHH
T ss_pred cccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChhhhc---cCCCCCEEEEEccccCceeEEEEccHHHHHHH
Confidence 5567778888865432 233443 4554444444544432 23469999999999999999999999998876
Q ss_pred HHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceE-EecCCCCCHHHHH
Q 010065 251 VDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGA-YSPAPVLTKELQS 328 (519)
Q Consensus 251 ~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~P~~~l~~~~~~ 328 (519)
..-+.. .+..+.+|+||+- .++.+.-+ |.++.++. +. -.....|-++|.... ..+ +++....
T Consensus 79 ~sll~~------~~~Y~T~EPfId~kyDirvqkI--G~~ykA~~--R~---sis~nWK~N~gsa~lEqi~---~~~ryk~ 142 (203)
T PF02750_consen 79 ASLLAI------TKDYATTEPFIDAKYDIRVQKI--GNNYKAYM--RT---SISGNWKANTGSAMLEQIA---MTERYKL 142 (203)
T ss_dssp HHHHHH------HTS-EEEEE---EEEEEEEEEE--TTEEEEEE--EE---ESSSTSSTTSSSEEEEEE------HHHHH
T ss_pred HHHHHh------cCceEEeeccccceeEEEEEEE--cCeEEEEE--Ec---cccccccccccchheeecC---CChHHHH
Confidence 665543 2467899999976 56666555 55554432 11 112234455554322 222 4555444
Q ss_pred HHHHHHHHHHHHHHHHc-CCCeeeEEEEEEEEEcCCCceEEEEEeCC
Q 010065 329 VVMESIILPTVKGMSAE-GCKFVGVLYAGLMIEKKSGLPKLIEYNVR 374 (519)
Q Consensus 329 ~i~~~a~~~~~~~~~a~-g~~~~G~~~vdf~~~~~g~~~~viEiN~R 374 (519)
-+.+.. ..+ |++ ++.+|.+...+| +-|++|+|--
T Consensus 143 Wvd~~s--------~lfGGlD---I~~v~ai~~kdG-ke~Iievnds 177 (203)
T PF02750_consen 143 WVDECS--------ELFGGLD---ICAVDAIHGKDG-KEYIIEVNDS 177 (203)
T ss_dssp HHHHHG--------GGGG--S---EEEEEEEEETTS--EEEEEEE-T
T ss_pred HHHHHH--------HHcCCcc---EEEEEEEEcCCC-CEEEEEecCC
Confidence 433322 455 444 577999999998 8899999964
No 107
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.65 E-value=0.00022 Score=71.08 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=27.6
Q ss_pred CEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC------CcEEEEEEE
Q 010065 224 PIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE------GEEASFFAL 283 (519)
Q Consensus 224 P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~------G~E~sv~~l 283 (519)
-+|+||..++.|+|+.++++.+++.+. .. .....++||+||+ |+-|.+.++
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---~~------~~~~~~vvQkYI~~PlLi~grKFDlR~y 123 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---SK------NKNQPYVVQKYIENPLLIDGRKFDLRVY 123 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---HC------CTTS-EEEEE--SSB--BTTB-EEEEEE
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---hh------hhhhhhhhhhccCCCeEEeeeeEEEEEE
Confidence 499999999999999999999887754 10 2457899999996 655544443
No 108
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=97.00 E-value=0.0061 Score=54.68 Aligned_cols=111 Identities=18% Similarity=0.123 Sum_probs=64.0
Q ss_pred CcEEEEeccCCcEEEEEEEEe--CCeeEEeccccccccccCC------------CCCCCCCCceEEecCCCCCHHHHHHH
Q 010065 265 CRVIIEEFLEGEEASFFALVD--GENAIPLESAQDHKRVGDG------------DTGPNTGGMGAYSPAPVLTKELQSVV 330 (519)
Q Consensus 265 ~~~lvEe~I~G~E~sv~~l~d--g~~~~~~~~~~~~~~~~~~------------~~~~~~g~~~~~~P~~~l~~~~~~~i 330 (519)
.+..+||||-|.-+.+..+.. .+.+-.++.-+++....|+ ...+.....|+. |+. +-+.+..++
T Consensus 21 ~~~~IeEyviG~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~-p~v-lRESLL~~v 98 (188)
T PF06973_consen 21 ENAIIEEYVIGVPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYVVVGNI-PAV-LRESLLPKV 98 (188)
T ss_dssp CCEEEEE---SEEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EEEEEEE-EEE-E-GGGHHHH
T ss_pred cccEEEEEecCceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceEEECCc-ccc-hhHhhHHHH
Confidence 679999999998888887753 1223223332222222221 111223334443 665 777788888
Q ss_pred HHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCCCC
Q 010065 331 MESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDP 378 (519)
Q Consensus 331 ~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~ 378 (519)
.+.+.+.+..+-+..+-...|++.+|.+++++. ++++.|+.+|.+++
T Consensus 99 fe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dl-e~vvfevS~RI~gG 145 (188)
T PF06973_consen 99 FEMGERFVEASKELVPPGMIGPFCLQSIVTDDL-EFVVFEVSARIVGG 145 (188)
T ss_dssp HHHHHHHHHHHHHHSTT---EEEEEEEEE-TTS-SEEEEEEESSB-GG
T ss_pred HHHHHHHHHHHHHhcCCCccccceEEEEEcCCc-eEEEEEEeccccCC
Confidence 887776554444455555669999999999988 89999999999543
No 109
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0063 Score=59.61 Aligned_cols=199 Identities=17% Similarity=0.141 Sum_probs=114.9
Q ss_pred HHcCCcEEEEC------CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHH----HHHHHcC---CCCCCeeecCC
Q 010065 144 RKWSVGLVVVG------PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMK----NLCDKYG---IPTAKYKTFTD 210 (519)
Q Consensus 144 ~~~~id~Vi~g------~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k----~~l~~~G---i~~p~~~~v~~ 210 (519)
+..++|+|+.+ .+...+..+...|...|||.+ ++..++-.+.||...+ ++....| +|..+.....+
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPn 230 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPN 230 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCC
Confidence 55689999983 122223355666888999998 8888888888886544 3345555 44433333333
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCCee
Q 010065 211 PNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGENA 289 (519)
Q Consensus 211 ~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~~~ 289 (519)
-.+. ...-.||+|||--.+.++.|-.+|+|.+|+.+.-.-..- .+...-+|.||+. .++.+.-+. .++
T Consensus 231 HK~m---~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval------~~Tyat~epFiDaKYDiriQKIG--~nY 299 (488)
T KOG3895|consen 231 HKEM---LSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVAL------TKTYATAEPFIDAKYDIRIQKIG--HNY 299 (488)
T ss_pred chhh---ccCCCCcEEEEecccccccceeeecchhhhHhHHHHHHH------Hhhhhhccccccccceeehhhhh--hhH
Confidence 2222 223349999999999999999999999998765433221 2356678999987 566666553 222
Q ss_pred EEeccccccccccCCCCCCCCCCceEEecCCCCCHHH-HHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCCCceEE
Q 010065 290 IPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKEL-QSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKSGLPKL 368 (519)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~-~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g~~~~v 368 (519)
-.+. + +-..++.|-++|... |..-. .++-+.. +..+-...|-- .++.|+.....+| +=|+
T Consensus 300 Kaym--R---tsIsgnWKtNtGSam-------LEQIamseRyklw----vdtcse~fGgl--dICav~alhsKdG-rd~i 360 (488)
T KOG3895|consen 300 KAYM--R---TSISGNWKTNTGSAM-------LEQIAMSERYKLW----VDTCSEMFGGL--DICAVKALHSKDG-RDYI 360 (488)
T ss_pred HHHh--h---hhhccCcccCchHHH-------HHHHHHHHHHHHH----HHHHHHhcCCc--ceEEeeeeecccc-hhhe
Confidence 2111 1 111223333333211 11000 0000111 01111233322 5688999999888 7899
Q ss_pred EEEeC
Q 010065 369 IEYNV 373 (519)
Q Consensus 369 iEiN~ 373 (519)
+|+|-
T Consensus 361 ~eV~d 365 (488)
T KOG3895|consen 361 IEVMD 365 (488)
T ss_pred eeecc
Confidence 99997
No 110
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.65 E-value=0.0083 Score=62.38 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=74.8
Q ss_pred HHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHH----------------HHHcCCCCCCeeecCC--------HHHHHHH
Q 010065 162 GLANKLVKAGIPTFGPSSEAAALEGSKNFMKNL----------------CDKYGIPTAKYKTFTD--------PNAAKQY 217 (519)
Q Consensus 162 ~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~----------------l~~~Gi~~p~~~~v~~--------~~~~~~~ 217 (519)
.+.+....-.++++| +-.+.+..||..+.-+ .+++ +|-+..++. .-++.+.
T Consensus 259 ~li~Ay~~~av~~vg--sfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~H---vP~T~~l~~~~~~~~g~~~dL~~~ 333 (445)
T PF14403_consen 259 PLIQAYRDGAVCMVG--SFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRH---VPWTRLLTAGRTTYQGEDVDLVEF 333 (445)
T ss_pred HHHHHHhcCCeEEec--chhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHh---CCceEEEcCccccccccchhHHHH
Confidence 344445555566663 4556777788766433 3333 456666655 2244444
Q ss_pred HHHhCCCEEEEeCCCCCCCcEEE--eCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCCcEEEEEEEEeCC
Q 010065 218 IQEEGAPIVVKADGLAAGKGVIV--AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEGEEASFFALVDGE 287 (519)
Q Consensus 218 ~~~~g~P~VvKP~~g~gs~GV~~--v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G~E~sv~~l~dg~ 287 (519)
+....--+|+||.++.||.||.+ =.+.+++.++++++. ++++|+|||++-.......+.+|+
T Consensus 334 ~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~--------~~~yilQe~v~~~~~~~~~~~dg~ 397 (445)
T PF14403_consen 334 AIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA--------REPYILQEYVRPPREPMPAFEDGE 397 (445)
T ss_pred HHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHh--------cCCcEEEEEecCCccccccccCCc
Confidence 44445579999999999999998 467899999999985 369999999986333333444555
No 111
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=96.15 E-value=0.0073 Score=64.83 Aligned_cols=208 Identities=14% Similarity=0.127 Sum_probs=113.6
Q ss_pred CcEEEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCH---HHHHHHHH-----
Q 010065 148 VGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDP---NAAKQYIQ----- 219 (519)
Q Consensus 148 id~Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~---~~~~~~~~----- 219 (519)
.|++|.....++--.-|....++.-|++-++...-.+..|+....++|++.||++|++..+... +++..+++
T Consensus 91 CdcLIsFhSsGFPLdKAiaY~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~v 170 (1018)
T KOG1057|consen 91 CDCLISFHSKGFPLDKAVAYAKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHV 170 (1018)
T ss_pred cceEEEeccCCCChHHHHHHHHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeE
Confidence 5778874333331112233445667888899999999999999999999999999999887621 22333332
Q ss_pred -----HhCCCEEEEeCCCCCCCcEEE--eCCH-HHHHHHHHHHHhh-ccCC-----CCCCcEEEEeccC--CcEEEEEEE
Q 010065 220 -----EEGAPIVVKADGLAAGKGVIV--AMTL-EEAYEAVDSMLLK-NAFG-----SAGCRVIIEEFLE--GEEASFFAL 283 (519)
Q Consensus 220 -----~~g~P~VvKP~~g~gs~GV~~--v~~~-~el~~a~~~~~~~-~~~~-----~~~~~~lvEe~I~--G~E~sv~~l 283 (519)
.+.-|+|=||+++-.. .|++ -.+. ---+..++++-.. ..|. ...+.+|-|||++ |.++-|-.+
T Consensus 171 EVnGevf~KPFVEKPVs~EDH-NIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTV 249 (1018)
T KOG1057|consen 171 EVNGEVFQKPFVEKPVSAEDH-NIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTV 249 (1018)
T ss_pred EEcceeccCCcccCCCCcccc-cEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEee
Confidence 2356999999865422 2222 1111 0111222222111 0010 1246799999998 465555444
Q ss_pred EeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEEEEcCC
Q 010065 284 VDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEGCKFVGVLYAGLMIEKKS 363 (519)
Q Consensus 284 ~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G~~~vdf~~~~~g 363 (519)
|-.+.+ .+.+ .....|+.-.-.+.|...-.|.. |+++.....++.+ .|+.- -++.+|+...+ |
T Consensus 250 --Gp~YaH-AEaR-KSPvvDGkV~Rns~GKEvRYpv~-Ls~~EK~iA~KVc--------iAF~Q---~VCGFDLLRa~-G 312 (1018)
T KOG1057|consen 250 --GPDYAH-AEAR-KSPVVDGKVERNSDGKEVRYPVI-LNSSEKQIARKVC--------IAFKQ---TVCGFDLLRAN-G 312 (1018)
T ss_pred --Ccchhh-hhhc-cCccccceeeecCCCceeeceee-cChhhHHHHhHHH--------hhccc---cccchHHhhcC-C
Confidence 321111 1111 11233332222333445556776 7776544444332 34432 34447876544 4
Q ss_pred CceEEEEEeCC
Q 010065 364 GLPKLIEYNVR 374 (519)
Q Consensus 364 ~~~~viEiN~R 374 (519)
+-|++.+|.-
T Consensus 313 -~SYVcDVNGf 322 (1018)
T KOG1057|consen 313 -KSYVCDVNGF 322 (1018)
T ss_pred -ceEEEeccce
Confidence 5899999963
No 112
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=96.12 E-value=0.055 Score=46.80 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=69.6
Q ss_pred CCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEEEEEEEEeCCeeEEeccccccccc
Q 010065 223 APIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEASFFALVDGENAIPLESAQDHKRV 301 (519)
Q Consensus 223 ~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~sv~~l~dg~~~~~~~~~~~~~~~ 301 (519)
-|++|||.......-=.+..+.+++...- . ...+..+++.+.++- .||.+.++ +|+ ++... .
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~~~-~-------~~~~~~V~vSe~v~~~~E~R~fi~-~g~-vv~~s---~---- 64 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIGFG-S-------LDPDTPVLVSEVVEIESEWRCFIV-DGE-VVTGS---P---- 64 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhccccC-C-------CCCCceEEEeceEeeeeeEEEEEE-CCE-EEEEe---e----
Confidence 48999999866666555667666654211 1 135688999999995 89999777 665 43221 1
Q ss_pred cCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHH-HcCCCeeeEEEEEEEEEcCCCceEEEEEeCCCC
Q 010065 302 GDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMS-AEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFG 376 (519)
Q Consensus 302 ~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~-a~g~~~~G~~~vdf~~~~~g~~~~viEiN~R~G 376 (519)
|..+. ... .+.+..+.+.+.+ . .-... -.+-+|+-++++| .++|+|+|.--+
T Consensus 65 Y~~~~-----------~~~-~~~~~~~~~~~~~--------~~~~~~p--~~~vlDvg~~~~G-~~~lVE~N~~~~ 117 (130)
T PF14243_consen 65 YRGDW-----------DLE-PDPDVVAFAIQAL--------AAAWTLP--PAYVLDVGVTDDG-GWALVEANDGWS 117 (130)
T ss_pred cCCCc-----------ccC-CCHHHHHHHHHHH--------HhcccCC--CeEEEEEEEeCCC-CEEEEEecCccc
Confidence 11110 011 3444444443332 2 12233 4466999999876 699999999763
No 113
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.22 E-value=0.22 Score=48.50 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=73.3
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC--CccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChh-
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD--ATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAP- 158 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~--~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~- 158 (519)
|+|+|+|+.+....++..|.+. |++++....+..+...... ...+ ..+..|.+.+.++++++++|+|+=. ...+
T Consensus 1 m~ILvlGGT~egr~la~~L~~~-g~~v~~s~~t~~~~~~~~~~g~~~v-~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~ 78 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQ-GIEILVTVTTSEGKHLYPIHQALTV-HTGALDPQELREFLKRHSIDILVDATHPFAA 78 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhC-CCeEEEEEccCCccccccccCCceE-EECCCCHHHHHHHHHhcCCCEEEEcCCHHHH
Confidence 5899999976667788888876 8888776544333222111 1122 3455677788899999999998863 2211
Q ss_pred -hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHH
Q 010065 159 -LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQ 219 (519)
Q Consensus 159 -~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~ 219 (519)
.-+.+.+.++++|+||+- ..+..+ .+.+.+..+.+.+++.+.+.
T Consensus 79 ~is~~a~~a~~~~~ipylR-------~eR~~~----------~~~~~~~~v~~~~ea~~~~~ 123 (256)
T TIGR00715 79 QITTNATAVCKELGIPYVR-------FERPPL----------ALGKNIIEVPDIEEATRVAY 123 (256)
T ss_pred HHHHHHHHHHHHhCCcEEE-------EECCCC----------CCCCCeEEeCCHHHHHHHhh
Confidence 123456678889999872 112110 13455667778777666543
No 114
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.05 E-value=0.061 Score=55.13 Aligned_cols=117 Identities=16% Similarity=0.234 Sum_probs=73.7
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCC-----CCccccCCCCCCHHHHHHHHHHcCCcEEEECCC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSG-----DATCIPDLDVLDGDAVISFCRKWSVGLVVVGPE 156 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~-----~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E 156 (519)
+++|+|||+|+..+.+++.|++....++...+.+........ ..+.. .+|..|.+++.+++++. |+||...-
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~-~vD~~d~~al~~li~~~--d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEAL-QVDAADVDALVALIKDF--DLVINAAP 77 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeE-EecccChHHHHHHHhcC--CEEEEeCC
Confidence 478999999988888999998873245544433311111110 11222 57888999999999876 88887322
Q ss_pred hhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCe
Q 010065 157 APLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY 205 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~ 205 (519)
..+...+.+.+-+.|++|+-.+... .+.+..+..++++|+.....
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~----~~~~~~~~~a~~Agit~v~~ 122 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYE----EPPWKLDEEAKKAGITAVLG 122 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCC----chhhhhhHHHHHcCeEEEcc
Confidence 2222256677888999997322221 12477888889999765443
No 115
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.3 Score=50.81 Aligned_cols=63 Identities=16% Similarity=0.297 Sum_probs=42.8
Q ss_pred HcCCCCCCe-eecCCHHHHHHHHHHhC-CCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC
Q 010065 197 KYGIPTAKY-KTFTDPNAAKQYIQEEG-APIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274 (519)
Q Consensus 197 ~~Gi~~p~~-~~v~~~~~~~~~~~~~g-~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~ 274 (519)
+.|+- |++ ..-.+.+++.+..++-. --+||||..+.-|.||++++...++- .+.+++||+||+
T Consensus 279 ef~fm-PrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~p--------------k~rpLvvQ~yie 343 (662)
T KOG2156|consen 279 EFGFM-PRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFP--------------KDRPLVVQKYIE 343 (662)
T ss_pred ccCcc-ceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCC--------------CcccHHHHHHhh
Confidence 44443 444 44457777777765532 22889999999999999998876642 345667777775
No 116
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=94.19 E-value=0.017 Score=57.38 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCceeccCCceeEEeccCCCccceeEEEee
Q 010065 33 NNLRFSVGPNFSISFNPQGSKSSFFSTVKC 62 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 62 (519)
+||+|+.+|-|||||||+...++.....||
T Consensus 326 EGi~h~~~P~fSVQ~HPEAsPGPhDt~ylF 355 (368)
T COG0505 326 EGIRHKDLPAFSVQYHPEASPGPHDTRYLF 355 (368)
T ss_pred cceecCCCceEEEccCCCCCCCCcccHHHH
Confidence 799999999999999999998876665555
No 117
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.85 E-value=0.59 Score=46.36 Aligned_cols=90 Identities=17% Similarity=0.092 Sum_probs=66.6
Q ss_pred CCCeeecCCHHHHHHHHHHh--CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC-cEE
Q 010065 202 TAKYKTFTDPNAAKQYIQEE--GAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG-EEA 278 (519)
Q Consensus 202 ~p~~~~v~~~~~~~~~~~~~--g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G-~E~ 278 (519)
+-+...+-+.+++..+...+ +-|+=+||..+.|++|-.++.+.++|..++..+-... . ....+++|+-++. .-|
T Consensus 114 vL~G~tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~-l--~~~GlVLE~~L~~~~T~ 190 (355)
T PF11379_consen 114 VLPGYTVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAE-L--ARHGLVLEEDLEEVVTY 190 (355)
T ss_pred ccCCccccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHH-H--HhCCEEEecccCCCcee
Confidence 44455666778877666554 4799999999999999999999999999988653110 0 1367999999998 889
Q ss_pred EEEEEEeCCeeEEecc
Q 010065 279 SFFALVDGENAIPLES 294 (519)
Q Consensus 279 sv~~l~dg~~~~~~~~ 294 (519)
||.-++-++....+..
T Consensus 191 SVGqv~v~g~~~SY~G 206 (355)
T PF11379_consen 191 SVGQVRVAGLVASYYG 206 (355)
T ss_pred eEEEEEECCEEEEEee
Confidence 9998875553444433
No 118
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.19 Score=53.04 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=38.4
Q ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC
Q 010065 222 GAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274 (519)
Q Consensus 222 g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~ 274 (519)
....|+||....-++|+.++++.+++.+........... ..++.++|+.||+
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~-~~~~~~vv~~yi~ 250 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISE-NNDEGYVVSAYID 250 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhcccccccc-cccccceeeeecc
Confidence 468999999999999999999999988776432210000 2356788888887
No 119
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=92.79 E-value=1.2 Score=43.12 Aligned_cols=91 Identities=21% Similarity=0.324 Sum_probs=58.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCC-CHHHHHHHHHHcCCcEEEECC---Ch
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVL-DGDAVISFCRKWSVGLVVVGP---EA 157 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~-d~~~l~~~~~~~~id~Vi~g~---E~ 157 (519)
+++|||+|+.+-...++..|.+. |+++++......+.... ....+ ..-.. +.+.+.++++++++++|+=.. -.
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~-g~~v~~Svat~~g~~~~-~~~~v-~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~ 78 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAA-GVDIVLSLAGRTGGPAD-LPGPV-RVGGFGGAEGLAAYLREEGIDLVIDATHPYAA 78 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhC-CCeEEEEEccCCCCccc-CCceE-EECCCCCHHHHHHHHHHCCCCEEEECCCccHH
Confidence 46899999987777788888766 88777654443222111 11112 22233 789999999999999998521 11
Q ss_pred hhHHHHHHHHHHCCCCee
Q 010065 158 PLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~ 175 (519)
..-+.+.+.++++|+||+
T Consensus 79 ~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 79 QISANAAAACRALGIPYL 96 (248)
T ss_pred HHHHHHHHHHHHhCCcEE
Confidence 112345666788888886
No 120
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=92.78 E-value=0.48 Score=47.13 Aligned_cols=102 Identities=29% Similarity=0.294 Sum_probs=71.2
Q ss_pred HhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC-CCEEEEeCCCCCC-----------CcEEEeCCHHHHHHHH
Q 010065 184 LEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG-APIVVKADGLAAG-----------KGVIVAMTLEEAYEAV 251 (519)
Q Consensus 184 ~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g-~P~VvKP~~g~gs-----------~GV~~v~~~~el~~a~ 251 (519)
+...-+...+++++.|+.+|+.+...+++++.+++++++ --+|||.-.-.|+ .||.+|.+++|.++.-
T Consensus 23 L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va 102 (434)
T KOG2799|consen 23 LGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVA 102 (434)
T ss_pred hhHHHHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHH
Confidence 334455668999999999999999999999999999998 5599998533332 3899999999998887
Q ss_pred HHHHhhccC-------CCCCCcEEEEeccCC-cEEEEEEEEe
Q 010065 252 DSMLLKNAF-------GSAGCRVIIEEFLEG-EEASFFALVD 285 (519)
Q Consensus 252 ~~~~~~~~~-------~~~~~~~lvEe~I~G-~E~sv~~l~d 285 (519)
..+...+-+ +..-..++|=+...+ .|+.+..+.|
T Consensus 103 ~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~d 144 (434)
T KOG2799|consen 103 SQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMD 144 (434)
T ss_pred HHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHh
Confidence 777643211 111123444444444 5666665543
No 121
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=92.65 E-value=2.6 Score=40.34 Aligned_cols=123 Identities=17% Similarity=0.226 Sum_probs=71.6
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCC-CCccccCCCCCCHHHHHHHHHHcCCcEEEECCC-hh-
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSG-DATCIPDLDVLDGDAVISFCRKWSVGLVVVGPE-AP- 158 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~-~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E-~~- 158 (519)
+++|+|+|+..-..+++..|... +...++..-..-+..... ..... ..-..+.+.+.++.+++++|.++=.+- .+
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~-~~~~~~ss~t~~g~~l~~~~~~~~-~~G~l~~e~l~~~l~e~~i~llIDATHPyAa 79 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAA-PVDIILSSLTGYGAKLAEQIGPVR-VGGFLGAEGLAAFLREEGIDLLIDATHPYAA 79 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhcc-CccEEEEEcccccccchhccCCee-ecCcCCHHHHHHHHHHcCCCEEEECCChHHH
Confidence 46899999887666778887755 322332221111111110 11111 334567899999999999999885311 11
Q ss_pred -hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC
Q 010065 159 -LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG 222 (519)
Q Consensus 159 -~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g 222 (519)
.-+...+.++..|+||+- ..+-++. .+ .+++..+.+.+++.+.+.+.+
T Consensus 80 ~iS~Na~~aake~gipy~r-------~eRP~~~-------~~--gd~~~~V~d~~ea~~~~~~~~ 128 (257)
T COG2099 80 RISQNAARAAKETGIPYLR-------LERPPWA-------PN--GDNWIEVADIEEAAEAAKQLG 128 (257)
T ss_pred HHHHHHHHHHHHhCCcEEE-------EECCccc-------cC--CCceEEecCHHHHHHHHhccC
Confidence 123345678888999872 1111110 00 467788889998888777665
No 122
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=91.79 E-value=0.79 Score=44.97 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=39.1
Q ss_pred cEEEEEeCChhHHHHHHHHHhcC--CCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSH--SCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~--g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|+|||+|++| ++.+.|.+.. +.+++.++.. .+|..|.+.+.++.++.+||+||.
T Consensus 1 M~iLi~G~~G---qLG~~L~~~l~~~~~v~a~~~~--------------~~Ditd~~~v~~~i~~~~PDvVIn 56 (281)
T COG1091 1 MKILITGANG---QLGTELRRALPGEFEVIATDRA--------------ELDITDPDAVLEVIRETRPDVVIN 56 (281)
T ss_pred CcEEEEcCCC---hHHHHHHHHhCCCceEEeccCc--------------cccccChHHHHHHHHhhCCCEEEE
Confidence 4699999886 3566666553 3555544221 357788899999999999999997
No 123
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=91.41 E-value=0.12 Score=43.01 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=41.9
Q ss_pred cCCeEEEEEEecCCHHHHHHHHHHHhhccccCC-----eeeccccccccccccccccC
Q 010065 466 TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPG-----GFYRRDIGWRALPQKQFATR 518 (519)
Q Consensus 466 ~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g-----~~~r~dig~~~~~~~~~~~~ 518 (519)
.+..++.+++.|.|+++|++++.++++...+.| .+.|.=+.++.|...++.|+
T Consensus 47 yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~Gv~TNi~fl~~ll~~~~f~~g~~~T~ 104 (107)
T PF02785_consen 47 YDSMIAKLIVHGPDREEAIARLRRALAETVIEGVKTNIPFLRALLAHPEFRSGTYDTG 104 (107)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHHHHHEEESSSHSHHHHHHHHTSHHHHTT-SSTT
T ss_pred chhhhhhheeeccchHHHHHHHHhhcceEEEECccCCHHHHHHHhCCcccccCCCeee
Confidence 346688999999999999999999999999999 35566666677766666553
No 124
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.53 E-value=1.4 Score=51.22 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=70.7
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCc-------------EEEEecCCCCCcCC-C---CCccccCCCCCCHHHHHHHHH
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCD-------------AVFCAPGNAGISNS-G---DATCIPDLDVLDGDAVISFCR 144 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~-------------~v~~~~~~~~~~~~-~---~~~~v~~~d~~d~~~l~~~~~ 144 (519)
+++|+|||+|......+..|.+..+++ +.+.+++....... . ....+ .+|..|.+.+.++++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v-~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAV-QLDVSDSESLLKYVS 647 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceE-EeecCCHHHHHHhhc
Confidence 679999999976667788887765555 33333221111111 0 11123 567788888887766
Q ss_pred HcCCcEEEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 010065 145 KWSVGLVVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204 (519)
Q Consensus 145 ~~~id~Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~ 204 (519)
. +|+|+...-..+-..+++.+-+.|++++..+... .+-..+.+.++++|+..-.
T Consensus 648 ~--~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~----~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 648 Q--VDVVISLLPASCHAVVAKACIELKKHLVTASYVS----EEMSALDSKAKEAGITILC 701 (1042)
T ss_pred C--CCEEEECCCchhhHHHHHHHHHcCCCEEECcCCH----HHHHHHHHHHHHcCCEEEE
Confidence 4 8999985333333456777888999998544111 1223456778888887644
No 125
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=90.02 E-value=0.22 Score=41.42 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=39.2
Q ss_pred cCCeEEEEEEecCCHHHHHHHHHHHhhccccCCe-----eecccccccccccccccc
Q 010065 466 TGGRVLGVTAKGKDVEEAQDRAYLAVEEINWPGG-----FYRRDIGWRALPQKQFAT 517 (519)
Q Consensus 466 ~~~rvg~vi~~g~t~~ea~~~a~~~~~~i~~~g~-----~~r~dig~~~~~~~~~~~ 517 (519)
.+..++.+|+.|+|+++|++++.++++...+.|. |.+.=+.++.|...++-|
T Consensus 47 yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~Gv~TN~~~l~~ll~~~~f~~g~~~T 103 (107)
T smart00878 47 YDSMIAKLIVHGETREEAIARLRRALDEFRIEGVKTNIPFLRALLRHPDFRAGDVDT 103 (107)
T ss_pred hhhhceEEEEEcCCHHHHHHHHHHHHHhCEEECccCCHHHHHHHhcCHhhhcCcccc
Confidence 3466789999999999999999999999999983 333334456655554444
No 126
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=89.19 E-value=2.4 Score=41.01 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=53.5
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCC-C--CCccccCCCCC-CHHHHHHHHHHcCCcEEEECC-C-
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNS-G--DATCIPDLDVL-DGDAVISFCRKWSVGLVVVGP-E- 156 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~--~~~~v~~~d~~-d~~~l~~~~~~~~id~Vi~g~-E- 156 (519)
|+|||+|+..-...++..|.+. |+ +++....+-+.... . ....+ ..... +.+.+.++++++++++|+=.. -
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~-g~-v~~sv~t~~g~~~~~~~~~~~~v-~~G~lg~~~~l~~~l~~~~i~~vIDATHPf 77 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEA-GY-VIVSVATSYGGELLKPELPGLEV-RVGRLGDEEGLAEFLRENGIDAVIDATHPF 77 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhc-CC-EEEEEEhhhhHhhhccccCCceE-EECCCCCHHHHHHHHHhCCCcEEEECCCch
Confidence 6899999987777789999877 76 33222111111111 0 01112 23333 788999999999999888421 1
Q ss_pred -hhhHHHHHHHHHHCCCCee
Q 010065 157 -APLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 157 -~~~~~~~a~~le~~gip~~ 175 (519)
...-+.+.+.++++|+||+
T Consensus 78 A~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 78 AAEISQNAIEACRELGIPYL 97 (249)
T ss_pred HHHHHHHHHHHHhhcCcceE
Confidence 1112344566777888876
No 127
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=87.08 E-value=1.9 Score=42.50 Aligned_cols=68 Identities=22% Similarity=0.240 Sum_probs=48.1
Q ss_pred cEEEEEeCChh--HHHHHHHHHhcCCCcEEEEecCCCCC-cCCCC--CccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGR--EHALCYALKRSHSCDAVFCAPGNAGI-SNSGD--ATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~--~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~~--~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|+|||.|+.|. .|. ++.|.+. |++++++|.-..+. ..+.. ...+ ..|..|.+.|.++..+++||+|+-
T Consensus 1 ~~iLVtGGAGYIGSHt-v~~Ll~~-G~~vvV~DNL~~g~~~~v~~~~~~f~-~gDi~D~~~L~~vf~~~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHT-VRQLLKT-GHEVVVLDNLSNGHKIALLKLQFKFY-EGDLLDRALLTAVFEENKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHH-HHHHHHC-CCeEEEEecCCCCCHHHhhhccCceE-EeccccHHHHHHHHHhcCCCEEEE
Confidence 57999997763 354 7777776 99999886443232 22221 1333 578899899999999999999996
No 128
>PRK05849 hypothetical protein; Provisional
Probab=85.87 E-value=39 Score=38.38 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=92.8
Q ss_pred HhcCHHHHHHHHHH--cCCCCCCeeecCC------HHHHHHHHH-Hh-CCCEEEEeCC------CCCCCcE--EE--eCC
Q 010065 184 LEGSKNFMKNLCDK--YGIPTAKYKTFTD------PNAAKQYIQ-EE-GAPIVVKADG------LAAGKGV--IV--AMT 243 (519)
Q Consensus 184 ~~~dK~~~k~~l~~--~Gi~~p~~~~v~~------~~~~~~~~~-~~-g~P~VvKP~~------g~gs~GV--~~--v~~ 243 (519)
.+..|..+-..|+. .|.++|+.+++.. .+.+.+.+. .+ +-|++|..+. +.+.-|. .+ +..
T Consensus 7 ~~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~ 86 (783)
T PRK05849 7 FFQTKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNA 86 (783)
T ss_pred ccchHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCC
Confidence 34568888888888 8999999887764 223333232 22 3689999752 1122333 23 333
Q ss_pred --HHHHHHHHHHHHhhccCC-CCCCcEEEEeccCCcEEEEEEEE-e---CCeeEEe--ccccccccccCCCCCCCCCCce
Q 010065 244 --LEEAYEAVDSMLLKNAFG-SAGCRVIIEEFLEGEEASFFALV-D---GENAIPL--ESAQDHKRVGDGDTGPNTGGMG 314 (519)
Q Consensus 244 --~~el~~a~~~~~~~~~~~-~~~~~~lvEe~I~G~E~sv~~l~-d---g~~~~~~--~~~~~~~~~~~~~~~~~~g~~~ 314 (519)
.+++.++++..++. |. ..+..++||++|.+...+=-++. | |...... ...-....+.++...+ ...
T Consensus 87 ~~~~~L~~AI~~V~aS--~~~~~~~aVlVQ~MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~t~---~~~ 161 (783)
T PRK05849 87 DSKDQLLKAIEKVIAS--YGTSKDDEILVQPMLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSGGS---ATT 161 (783)
T ss_pred CcHHHHHHHHHHHHHh--hCCCCCCeEEEEeCccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccCCC---Cce
Confidence 34899999998853 21 23467999999985333322332 2 2211111 1000111122211110 000
Q ss_pred EEe--cCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeee-EEEEEEEEEcCCCceEEEEEeC
Q 010065 315 AYS--PAPVLTKELQSVVMESIILPTVKGMSAEGCKFVG-VLYAGLMIEKKSGLPKLIEYNV 373 (519)
Q Consensus 315 ~~~--P~~~l~~~~~~~i~~~a~~~~~~~~~a~g~~~~G-~~~vdf~~~~~g~~~~viEiN~ 373 (519)
.+. ....++++...++.+.+.+ +... |.+ +..|||-+|++| ++|++-.=|
T Consensus 162 ~~~~~~~~~l~p~~~~~L~~la~~-----LE~~---fg~dpqDIEfaid~~g-~L~lLQ~RP 214 (783)
T PRK05849 162 VYHYRDALVFKPPRLKKLIELIRE-----LEAL---FGCDFLDIEFAIDEKE-ELYILQVRP 214 (783)
T ss_pred eeeccccccCCHHHHHHHHHHHHH-----HHHH---cCCCCeeeEEEEccCC-EEEEEEccC
Confidence 111 1122667777777666532 1111 213 788999998777 789876544
No 129
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=85.74 E-value=1.9 Score=42.70 Aligned_cols=56 Identities=27% Similarity=0.430 Sum_probs=38.7
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|||||+|+.| ....+...+.+. |++++.+... .+|..|.+.+.++.++.++|+||.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r~--------------~~dl~d~~~~~~~~~~~~pd~Vin 57 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIATSRS--------------DLDLTDPEAVAKLLEAFKPDVVIN 57 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEESTT--------------CS-TTSHHHHHHHHHHH--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCch--------------hcCCCCHHHHHHHHHHhCCCeEec
Confidence 7999999654 456677777654 7666554211 356778899999999999999997
No 130
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.72 E-value=3.7 Score=39.15 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=60.8
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcC-CC---CCccccCCCCCCHHHHHHHHHHcCCcEEEE-CCCh
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISN-SG---DATCIPDLDVLDGDAVISFCRKWSVGLVVV-GPEA 157 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-~~---~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~-g~E~ 157 (519)
|+++|+|.|.....+++.|.+. |.+++.++.+...... .+ ....+ ..|..+.+.|.++ --.+.|.++. .++|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~~~~~~~~~~~~~~~v-~gd~t~~~~L~~a-gi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEERVEEFLADELDTHVV-IGDATDEDVLEEA-GIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHHHHHHHhhhhcceEEE-EecCCCHHHHHhc-CCCcCCEEEEeeCCC
Confidence 6899999998778899999877 8999988755321111 01 11112 3566666655543 2345777776 3333
Q ss_pred hhHHHHHHH-HHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcC
Q 010065 158 PLVSGLANK-LVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYG 199 (519)
Q Consensus 158 ~~~~~~a~~-le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~G 199 (519)
....-++.. ++.+|+|.+ +....|.... +.+++.|
T Consensus 78 ~~N~i~~~la~~~~gv~~v------iar~~~~~~~-~~~~~~g 113 (225)
T COG0569 78 EVNSVLALLALKEFGVPRV------IARARNPEHE-KVLEKLG 113 (225)
T ss_pred HHHHHHHHHHHHhcCCCcE------EEEecCHHHH-HHHHHcC
Confidence 332122222 344688755 3444555544 4556666
No 131
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=84.38 E-value=4.8 Score=34.03 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=54.5
Q ss_pred EEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC--cCCCCCccccCCC-CCC--HHHHHHHHHHcCCcEEEECCChhhH
Q 010065 86 LVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI--SNSGDATCIPDLD-VLD--GDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 86 liiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~--~~~~~~~~v~~~d-~~d--~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
..+|+-. ..++..-++++ |.+++.+....... ......+.+..+| ..| -+.+.+.+.+.+ ..++|.+--...
T Consensus 2 ~tlaSHS-ALqIl~GAk~E-GFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~f~di~~~~~q~~L~~~N-~I~VPhgSfv~Y 78 (124)
T PF06849_consen 2 ATLASHS-ALQILDGAKDE-GFRTIAICQKGREKFYRRFPFIDEVIVLDSFSDILSEEVQEKLREMN-AIFVPHGSFVAY 78 (124)
T ss_dssp EEESSTT-HHHHHHHHHHT-T--EEEEEETTCHHHHHTTTT-SEEEEESSCGHCCSHHHHHHHHHTT-EEE--BTTHHHH
T ss_pred eeeechH-HHHHhhhHHHc-CCcEEEEECCCCcchhhhcCcCcEEEEeCCHHHHHhHHHHHHHHHCC-eEEecCCCeeEe
Confidence 3455542 34567777767 99998886442211 0111111110112 111 123444444433 234554443333
Q ss_pred HHHHHHHHH-CCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCe
Q 010065 161 SGLANKLVK-AGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKY 205 (519)
Q Consensus 161 ~~~a~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~ 205 (519)
.++ +..|. +.+|++|+ -...++..|...-+.+|+++|||.|+.
T Consensus 79 ~G~-d~ie~~~~vP~FGN-R~lLrwEseR~~~~~lL~~AgI~~P~~ 122 (124)
T PF06849_consen 79 VGY-DRIENEFKVPIFGN-RNLLRWESERDKERNLLEKAGIPMPRK 122 (124)
T ss_dssp H-H-HHHHHT-SS-EES--CCGGHCCCSHHHHHHHHHHTT-BB--B
T ss_pred ecH-HHHhhcCCCCeecC-hHHHHhhhhhhhHHHHHHHcCCCCCcc
Confidence 354 34555 99999975 445666668888888999999999984
No 132
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=84.32 E-value=24 Score=33.28 Aligned_cols=133 Identities=22% Similarity=0.272 Sum_probs=76.6
Q ss_pred EEEEEeCChhH--HHHHHHHHhcCCCcEEEEe---cCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE---CC
Q 010065 84 VVLVIGGGGRE--HALCYALKRSHSCDAVFCA---PGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV---GP 155 (519)
Q Consensus 84 ~vliiG~g~~~--~~l~~~l~~~~g~~~v~~~---~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~---g~ 155 (519)
+++.+-+||.. +++.++++ .|+++..+- |.+. +.+ .....+.+.....++..++..+.. +.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~--~G~eV~~Ll~~~p~~~--------dS~-m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~ 70 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALE--EGHEVVYLLTVKPENG--------DSY-MFHTPNLELAELQAEAMGIPLVTFDTSGE 70 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHH--cCCeeEEEEEEecCCC--------Cee-eeeccchHHHHHHHHhcCCceEEEecCcc
Confidence 44445455433 44455543 377776542 3332 111 223344455555566667776554 23
Q ss_pred ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEe
Q 010065 156 EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKA 229 (519)
Q Consensus 156 E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP 229 (519)
++.-+..+++.++.+++-.+ ..-++..-..|.++.++++++|+.+-...-=.+++++.+..-+.||-++|=.
T Consensus 71 ~e~eve~L~~~l~~l~~d~i--v~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~ 142 (223)
T COG2102 71 EEREVEELKEALRRLKVDGI--VAGAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAIIVA 142 (223)
T ss_pred chhhHHHHHHHHHhCcccEE--EEchhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEEEE
Confidence 44456678888888886644 3345666678999999999999976322222355565554556687765433
No 133
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=82.96 E-value=0.59 Score=48.38 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.2
Q ss_pred CCceeccCCceeEEeccCCCccce
Q 010065 33 NNLRFSVGPNFSISFNPQGSKSSF 56 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~ 56 (519)
+|++|..+|.|+|||||+...+..
T Consensus 386 egi~~~~~pi~gVQFHPEa~pgp~ 409 (415)
T PLN02771 386 AGLAFPALNVMSLQYHPEASPGPH 409 (415)
T ss_pred EEEEECCCCEEEEEcCCCCCCCCC
Confidence 699999999999999999876554
No 134
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=82.10 E-value=8.4 Score=40.01 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=60.6
Q ss_pred CceeEEeccCCCccceeEEEeeccCCCCCcccccCCCCCCCccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCC
Q 010065 41 PNFSISFNPQGSKSSFFSTVKCLAQKSQPSVSVNAPTNAGQRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGI 119 (519)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~v~~GG~s~e~~vS~~s~~~~~~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~ 119 (519)
|...+.+.+..+......+..-+.....+..+..=-....+.++|+|+|+.| ....+++.|.+. |++++.+..+....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~-G~~V~~l~R~~~~~ 97 (390)
T PLN02657 19 PSNRLAASLGGALVRRAAAASRGSRATAAAAAQSFRSKEPKDVTVLVVGATGYIGKFVVRELVRR-GYNVVAVAREKSGI 97 (390)
T ss_pred ccchhhhcccccccccccccccCccCCCccccccccccCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEEechhhc
Confidence 3333444444444333333444444433322222112233467999999764 455678888776 88887775432111
Q ss_pred c----------CCCCCccccCCCCCCHHHHHHHHHHc--CCcEEEE
Q 010065 120 S----------NSGDATCIPDLDVLDGDAVISFCRKW--SVGLVVV 153 (519)
Q Consensus 120 ~----------~~~~~~~v~~~d~~d~~~l~~~~~~~--~id~Vi~ 153 (519)
. .......+ ..|..|.+.+.+.++.. ++|.|+.
T Consensus 98 ~~~~~~~~~~~~~~~v~~v-~~Dl~d~~~l~~~~~~~~~~~D~Vi~ 142 (390)
T PLN02657 98 RGKNGKEDTKKELPGAEVV-FGDVTDADSLRKVLFSEGDPVDVVVS 142 (390)
T ss_pred cccchhhHHhhhcCCceEE-EeeCCCHHHHHHHHHHhCCCCcEEEE
Confidence 0 00112223 56888888888888765 6899985
No 135
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=81.64 E-value=6.3 Score=35.61 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=43.4
Q ss_pred EEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 85 VLVIGG-GGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 85 vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|+|+|+ |.....++..|.+. |++++.+..+............+ ..|..|.+.+.+..+ +.|.|+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~~~~~~~~~~~~-~~d~~d~~~~~~al~--~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPSKAEDSPGVEII-QGDLFDPDSVKAALK--GADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGGGHHHCTTEEEE-ESCTTCHHHHHHHHT--TSSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHC-CCEEEEEecCchhcccccccccc-eeeehhhhhhhhhhh--hcchhhh
Confidence 789997 44567788888887 78888776542221111122333 578888888887766 6888887
No 136
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=80.15 E-value=16 Score=38.68 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=54.7
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcC--CCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC---CC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSH--SCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG---PE 156 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~--g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g---~E 156 (519)
..+++|+|+|.....++..+.+.. |++.+-+-++++.... ....+ ++ ..+.+++.++++++++|.|+.. .+
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~--~i~g~-pV-lg~~~~l~~~i~~~~id~ViIa~p~~~ 200 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSDRV--EVAGL-PV-LGKLDDLVELVRAHRVDEVIIALPLSE 200 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCccccc--ccCCC-cc-cCCHHHHHHHHHhCCCCEEEEecCccc
Confidence 467999999976666777776543 6666554332221111 11111 11 2346778899999999988873 22
Q ss_pred hhhHHHHHHHHHHCCCCee
Q 010065 157 APLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~ 175 (519)
......+.+.++..|+++.
T Consensus 201 ~~~~~~ll~~~~~~gv~V~ 219 (445)
T TIGR03025 201 EARILELLLQLRDLGVDVR 219 (445)
T ss_pred HHHHHHHHHHHHhcCCEEE
Confidence 2334456677888888764
No 137
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=79.70 E-value=24 Score=33.95 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=25.5
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
..+|+|+|.|+....+++.|.+. |+..+.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~-Gvg~i~lv 54 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA-GVGNLTLL 54 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEE
Confidence 46899999998887889999877 88776653
No 138
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=79.32 E-value=16 Score=35.73 Aligned_cols=113 Identities=19% Similarity=0.102 Sum_probs=57.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCC-CCC-ccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNS-GDA-TCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~-~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
++||.|+|.|.....+++.+.+..+++...+...+...... ... ..+ .-..|.+.+ ..++|+|+-..-...
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~--~~~~d~~~l-----~~~~DvVve~t~~~~ 73 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAV--RVVSSVDAL-----PQRPDLVVECAGHAA 73 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCC--eeeCCHHHh-----ccCCCEEEECCCHHH
Confidence 36899999996555567777665556655543211110000 000 001 012334443 367999987322222
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCC
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIP 201 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~ 201 (519)
...++..+-+.|++++-.++.+.........+++.+++.|..
T Consensus 74 ~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 74 LKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 234455555679998854444432112234456667777653
No 139
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=78.98 E-value=18 Score=30.38 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=47.0
Q ss_pred cEEEEEeCCh----hHHHHHHHHHhcCCCcEEEEecCCC---CCcCCCCCcccc-CCCC-------CCHHHHHHHHHHcC
Q 010065 83 VVVLVIGGGG----REHALCYALKRSHSCDAVFCAPGNA---GISNSGDATCIP-DLDV-------LDGDAVISFCRKWS 147 (519)
Q Consensus 83 ~~vliiG~g~----~~~~l~~~l~~~~g~~~v~~~~~~~---~~~~~~~~~~v~-~~d~-------~d~~~l~~~~~~~~ 147 (519)
++|.|+|+.. ..+.+...|++. |++++.++|... +......-...+ .+|. .....+++-+.+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g 79 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALG 79 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcC
Confidence 4678888653 235567777775 899888876632 111111100010 1121 12444555555667
Q ss_pred CcEEEE--CCChhhHHHHHHHHHHCCCCeeCCcHHH
Q 010065 148 VGLVVV--GPEAPLVSGLANKLVKAGIPTFGPSSEA 181 (519)
Q Consensus 148 id~Vi~--g~E~~~~~~~a~~le~~gip~~g~~~~~ 181 (519)
+..++. +.+.. .+.+.+++.|++++|++--.
T Consensus 80 ~~~v~~~~g~~~~---~~~~~a~~~gi~vigp~C~g 112 (116)
T PF13380_consen 80 VKAVWLQPGAESE---ELIEAAREAGIRVIGPNCLG 112 (116)
T ss_dssp -SEEEE-TTS--H---HHHHHHHHTT-EEEESS-HH
T ss_pred CCEEEEEcchHHH---HHHHHHHHcCCEEEeCCcce
Confidence 777776 32222 45666888999998776443
No 140
>PLN00016 RNA-binding protein; Provisional
Probab=78.82 E-value=12 Score=38.68 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=49.3
Q ss_pred CccEEEEE----eCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCC--------C--CccccCCCCCCHHHHHHHHHH
Q 010065 81 QRVVVLVI----GGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSG--------D--ATCIPDLDVLDGDAVISFCRK 145 (519)
Q Consensus 81 ~~~~vlii----G~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~--------~--~~~v~~~d~~d~~~l~~~~~~ 145 (519)
.+++|||+ |+.| ....+++.|.+. |++++.+..+........ . ...+ ..-..|...+.++...
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~-G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v-~~v~~D~~d~~~~~~~ 128 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKA-GHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGV-KTVWGDPADVKSKVAG 128 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHC-CCEEEEEecCCcchhhhccCchhhhhHhhhcCc-eEEEecHHHHHhhhcc
Confidence 35789999 8654 345678888877 898887764322111000 0 0001 1111233334444444
Q ss_pred cCCcEEEEC--CChhhHHHHHHHHHHCCCC
Q 010065 146 WSVGLVVVG--PEAPLVSGLANKLVKAGIP 173 (519)
Q Consensus 146 ~~id~Vi~g--~E~~~~~~~a~~le~~gip 173 (519)
.++|.|+.. .+......+.+.+.+.|++
T Consensus 129 ~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvk 158 (378)
T PLN00016 129 AGFDVVYDNNGKDLDEVEPVADWAKSPGLK 158 (378)
T ss_pred CCccEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 578998873 2332344566667778874
No 141
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=78.68 E-value=19 Score=38.06 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=54.9
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcC--CCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC---CC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSH--SCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG---PE 156 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~--g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g---~E 156 (519)
+.+++|+|+|.....++..+.+.. |++.+-+-++++...... ..+ ++ ..+.+++.++++++++|.|+.. .+
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~--~gv-pV-lg~~~dl~~~i~~~~vd~ViIA~p~~~ 203 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDARTGV--RGV-PV-LGKLDDLEELIREGEVDEVYIALPLAA 203 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc--CCC-Cc-cCCHHHHHHHHHhcCCCEEEEeeCccc
Confidence 468999999976666777876543 676655433332211100 111 11 2346778889999999988873 22
Q ss_pred hhhHHHHHHHHHHCCCCee
Q 010065 157 APLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~ 175 (519)
......+.+.++..|+++.
T Consensus 204 ~~~~~~ll~~~~~~gv~V~ 222 (451)
T TIGR03023 204 EDRILELLDALEDLTVDVR 222 (451)
T ss_pred HHHHHHHHHHHHhcCCEEE
Confidence 2334456667778888663
No 142
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=78.09 E-value=16 Score=35.11 Aligned_cols=99 Identities=22% Similarity=0.242 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC-EEEEeCCCCCCC-----------cEEEeCCHHHHHHHHHHHH
Q 010065 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP-IVVKADGLAAGK-----------GVIVAMTLEEAYEAVDSML 255 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P-~VvKP~~g~gs~-----------GV~~v~~~~el~~a~~~~~ 255 (519)
.+..|++|.++|+.+-++.+.++..++.+.+..++-| +|+|.---.|++ ||++-.+++...++..++.
T Consensus 24 EfQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~qMI 103 (412)
T KOG1447|consen 24 EFQSKEILSKNGVRVQRFFVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQMI 103 (412)
T ss_pred HhhhHHHHHhcCeeEEEEEEecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHHHH
Confidence 4567889999999999999999998888888888855 899985333332 5677788888888887776
Q ss_pred hhccC-------CCCCCcEEEEeccCC-cEEEEEEEEeC
Q 010065 256 LKNAF-------GSAGCRVIIEEFLEG-EEASFFALVDG 286 (519)
Q Consensus 256 ~~~~~-------~~~~~~~lvEe~I~G-~E~sv~~l~dg 286 (519)
..+-. +-.-+.+||-|-++= +|--..++.|.
T Consensus 104 G~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDR 142 (412)
T KOG1447|consen 104 GYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 142 (412)
T ss_pred hhhhhhccCCccceeeeeEEEeeccccchheeeeeeecc
Confidence 43110 001246788887775 66556566543
No 143
>PRK06179 short chain dehydrogenase; Provisional
Probab=77.65 E-value=9 Score=37.09 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=43.0
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHH-----cCCcEEEE
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRK-----WSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~-----~~id~Vi~ 153 (519)
.++++|+|+++ ....+++.|.+. |++++.++.+............+ ..|..|.+.+.++.+. .++|+++.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~-~~D~~d~~~~~~~~~~~~~~~g~~d~li~ 79 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARA-GYRVFGTSRNPARAAPIPGVELL-ELDVTDDASVQAAVDEVIARAGRIDVLVN 79 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCChhhccccCCCeeE-EeecCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 46799999663 456678888877 88877765432111111112223 5677777766665554 25898887
No 144
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=77.20 E-value=22 Score=37.93 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=55.5
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcC--CCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC---CC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSH--SCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG---PE 156 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~--g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g---~E 156 (519)
+++++|+|+|.....++..+.+.. |++++.+-++++. .. ..+ + -..+.+++.++++++++|-|+.. .+
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~-~g----~~V-p-vlG~~~dL~~~v~~~~IdeViIAip~~~ 215 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPKP-GG----VSN-D-WAGNLQQLVEDAKAGKIHNVYIAMSMCD 215 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCcc-cc----CCC-C-cCCCHHHHHHHHHhCCCCEEEEeCCCcc
Confidence 467999999977667778876653 6766654333321 00 011 1 12356788889999999988873 33
Q ss_pred hhhHHHHHHHHHHCCCCee
Q 010065 157 APLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~ 175 (519)
......+.+.++..++++.
T Consensus 216 ~~~l~ell~~~~~~~v~V~ 234 (463)
T PRK10124 216 GARVKKLVRQLADTTCSVL 234 (463)
T ss_pred hHHHHHHHHHHHHcCCeEE
Confidence 3344566677888888763
No 145
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=76.96 E-value=34 Score=32.95 Aligned_cols=139 Identities=14% Similarity=0.119 Sum_probs=81.9
Q ss_pred ccEEEEEeCChhHH-HHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE-C-----
Q 010065 82 RVVVLVIGGGGREH-ALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV-G----- 154 (519)
Q Consensus 82 ~~~vliiG~g~~~~-~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~-g----- 154 (519)
.++++|--+||... .++..+.+..|-+++.++-..|- +.....+....++++.++.--|. .
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~------------~p~~e~e~A~~~A~~iGi~H~~i~~~~~~~ 84 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPY------------IPRREIEEAKNIAKEIGIRHEFIKMNRMDP 84 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHhccceEEEEEecCC------------CChhhhhHHHHHHHHhCCcceeeehhhcch
Confidence 45788877777543 34444445567666666433221 11111233334444444322221 1
Q ss_pred -----CC-------hhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC
Q 010065 155 -----PE-------APLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEG 222 (519)
Q Consensus 155 -----~E-------~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g 222 (519)
.+ ..+...+.+..++.|..++-.+..++.+..++--. +..++.||.+|--..=-+..++.++++.+|
T Consensus 85 ~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RPG~-rA~kE~gi~sPl~e~gitk~eIre~a~~lg 163 (269)
T COG1606 85 EFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRPGL-RALKELGIRSPLAEFGITKKEIREIAKSLG 163 (269)
T ss_pred hhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCcch-hhHHhcCCCChHHHhCCcHHHHHHHHHHcC
Confidence 11 12233455667778888887778888887777655 456677898876433335678888999999
Q ss_pred CCEEEEeCCCC
Q 010065 223 APIVVKADGLA 233 (519)
Q Consensus 223 ~P~VvKP~~g~ 233 (519)
+|+-=||....
T Consensus 164 l~~~~kp~~aC 174 (269)
T COG1606 164 LPTWDKPSMAC 174 (269)
T ss_pred CCcccCccccc
Confidence 99999997544
No 146
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=76.20 E-value=27 Score=33.91 Aligned_cols=86 Identities=14% Similarity=0.060 Sum_probs=47.3
Q ss_pred ccEEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChhh
Q 010065 82 RVVVLVIGG-GGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAPL 159 (519)
Q Consensus 82 ~~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~~ 159 (519)
+++|.|+|. |.....++..+.+..+++.+.+.+.++...... .........|.+.++ . ++|+|+-. .-...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~~~~i~~~~dl~~ll---~--~~DvVid~t~p~~~ 73 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--GALGVAITDDLEAVL---A--DADVLIDFTTPEAT 73 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--CCCCccccCCHHHhc---c--CCCEEEECCCHHHH
Confidence 368999998 755555677776655777766543322111100 111011234455543 2 68988853 22322
Q ss_pred HHHHHHHHHHCCCCee
Q 010065 160 VSGLANKLVKAGIPTF 175 (519)
Q Consensus 160 ~~~~a~~le~~gip~~ 175 (519)
..++..+-+.|+|++
T Consensus 74 -~~~~~~al~~G~~vv 88 (257)
T PRK00048 74 -LENLEFALEHGKPLV 88 (257)
T ss_pred -HHHHHHHHHcCCCEE
Confidence 345666777899986
No 147
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=76.10 E-value=13 Score=37.53 Aligned_cols=53 Identities=32% Similarity=0.233 Sum_probs=38.5
Q ss_pred EEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhcc---CCCCCCcEEEEeccCCcE
Q 010065 225 IVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNA---FGSAGCRVIIEEFLEGEE 277 (519)
Q Consensus 225 ~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~---~~~~~~~~lvEe~I~G~E 277 (519)
+|||...|.-|.||..+.+.+|+...=++...... -+..-.++||||=|.-.|
T Consensus 260 ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E 315 (403)
T TIGR02049 260 VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFE 315 (403)
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceee
Confidence 78999999999999999999999876555442211 111236799999886543
No 148
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=76.09 E-value=1.6 Score=44.70 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.6
Q ss_pred CCceeccCCceeEEeccCCCcc
Q 010065 33 NNLRFSVGPNFSISFNPQGSKS 54 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~ 54 (519)
+|++|...|.|+|||||+...+
T Consensus 320 egi~h~~~pi~gVQfHPE~~~g 341 (358)
T TIGR01368 320 EGIRHKDLPVFSVQYHPEASPG 341 (358)
T ss_pred EEEEECCCCEEEEEECCCCCCC
Confidence 6899999999999999998643
No 149
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=75.92 E-value=25 Score=33.06 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=51.1
Q ss_pred CccEEEEEeCChhHHHHHHHHH-hcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREHALCYALK-RSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~-~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
.+++|+|+|.|.....++..+. ...|++.+.+.+.++..... ....+ .....+.+.+++++.++|.|+.......
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~-~i~g~---~v~~~~~l~~li~~~~iD~ViIa~P~~~ 158 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGT-KIGGI---PVYHIDELEEVVKENDIEIGILTVPAEA 158 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCC-EeCCe---EEcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence 4578999999975545554422 23477776554333321110 00111 1123567778888889998887432222
Q ss_pred HHHHHHHHHHCCCCee
Q 010065 160 VSGLANKLVKAGIPTF 175 (519)
Q Consensus 160 ~~~~a~~le~~gip~~ 175 (519)
.+.+.+.+...|+..+
T Consensus 159 ~~~i~~~l~~~Gi~~i 174 (213)
T PRK05472 159 AQEVADRLVEAGIKGI 174 (213)
T ss_pred HHHHHHHHHHcCCCEE
Confidence 3355666777787543
No 150
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=75.83 E-value=8.8 Score=39.69 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=59.5
Q ss_pred EEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC-c------CCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCCh
Q 010065 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI-S------NSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEA 157 (519)
Q Consensus 85 vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~------~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~ 157 (519)
|+|+|+|.....++..|.+......+.+...+... . .......+ .+|..|.+.+.+++++. |+|+...-.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~l~~~~~~~--dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAV-QVDVNDPESLAELLRGC--DVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEE-E--TTTHHHHHHHHTTS--SEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEE-EEecCCHHHHHHHHhcC--CEEEECCcc
Confidence 78999986667788888877555234443322211 0 01112223 57888988888887655 888873211
Q ss_pred hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 010065 158 PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~ 204 (519)
.....+++.+-+.|++|+-.+. ....-....+.++++|+....
T Consensus 78 ~~~~~v~~~~i~~g~~yvD~~~----~~~~~~~l~~~a~~~g~~~l~ 120 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHYVDTSY----VTEEMLALDEEAKEAGVTALP 120 (386)
T ss_dssp GGHHHHHHHHHHHT-EEEESS-----HHHHHHHCHHHHHHTTSEEE-
T ss_pred chhHHHHHHHHHhCCCeeccch----hHHHHHHHHHHHHhhCCEEEe
Confidence 1333577778889999985333 111112233445577775533
No 151
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=75.76 E-value=21 Score=36.32 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=25.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEE-EecC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVF-CAPG 115 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~-~~~~ 115 (519)
..+|+|+|.|+....++..|.+. |+..+. +|++
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 56899999998887889999887 885554 4443
No 152
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=75.52 E-value=31 Score=33.39 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=67.9
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CC-----
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PE----- 156 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E----- 156 (519)
.+|+|.-+||....++..+....|.+++.+.-+++. ....+.+...++++..+++..+.. .+
T Consensus 13 ~~vlVa~SGGvDSs~ll~la~~~g~~v~av~~~~~~------------~~~~e~~~a~~~a~~lgi~~~ii~~~~~~~~~ 80 (252)
T TIGR00268 13 KKVLIAYSGGVDSSLLAAVCSDAGTEVLAITVVSPS------------ISPRELEDAIIIAKEIGVNHEFVKIDKMINPF 80 (252)
T ss_pred CCEEEEecCcHHHHHHHHHHHHhCCCEEEEEecCCC------------CCHHHHHHHHHHHHHcCCCEEEEEcHHHHHHH
Confidence 467777777654333333333337766655432211 111234555666666666554431 11
Q ss_pred ------------hhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCC
Q 010065 157 ------------APLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAP 224 (519)
Q Consensus 157 ------------~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P 224 (519)
......+.+..++.|+.++-.+...-.......-+ ..+.+.++..|-...--+.+++.++++++|.|
T Consensus 81 ~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~-~a~~~~~~~~PL~~~~l~K~eIr~la~~~gl~ 159 (252)
T TIGR00268 81 RANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRPGY-RAVKEFNGVSPWAEFGITKKEIREIAKSLGIS 159 (252)
T ss_pred HhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccHHH-HHHHHcCCCCcchhcCCCHHHHHHHHHHcCCC
Confidence 11112233445667776542222211222222222 23445555544322213678888999999999
Q ss_pred EEEEeCCCC
Q 010065 225 IVVKADGLA 233 (519)
Q Consensus 225 ~VvKP~~g~ 233 (519)
+.-||...+
T Consensus 160 ~~~~ps~~C 168 (252)
T TIGR00268 160 FPDKPSEAC 168 (252)
T ss_pred ccCCCCCCc
Confidence 988986543
No 153
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=75.52 E-value=18 Score=35.19 Aligned_cols=85 Identities=13% Similarity=0.193 Sum_probs=51.5
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcC-CCcEEEEecCCCCCcCCCCCccccCCCCCCHH-------HHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSH-SCDAVFCAPGNAGISNSGDATCIPDLDVLDGD-------AVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~-g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~-------~l~~~~~~~~id~Vi~ 153 (519)
.++|+|+.+|--...+.+.+++.. ..+.+++.++.. . +.-..+.+ ++.++..+..++.++.
T Consensus 5 ~~~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~----------~-PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVI 73 (269)
T COG0796 5 QPPIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTAR----------F-PYGEKSEEEIRERTLEIVDFLLERGIKALVI 73 (269)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHCCCCcEEEEecCCC----------C-CCCCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 468999987733344566666554 555666643311 1 11122222 3344445566999998
Q ss_pred CCChhhHHHHHHHHHHCCCCeeCC
Q 010065 154 GPEAPLVSGLANKLVKAGIPTFGP 177 (519)
Q Consensus 154 g~E~~~~~~~a~~le~~gip~~g~ 177 (519)
.+.++....+.++-+++.+|++|-
T Consensus 74 ACNTASa~al~~LR~~~~iPVvGv 97 (269)
T COG0796 74 ACNTASAVALEDLREKFDIPVVGV 97 (269)
T ss_pred ecchHHHHHHHHHHHhCCCCEEEe
Confidence 777776556666677889999873
No 154
>PRK00865 glutamate racemase; Provisional
Probab=75.46 E-value=28 Score=33.95 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=51.5
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcC-CCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 82 RVVVLVIGGGGREHALCYALKRSH-SCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~-g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
++.|.|+.+|--...+.+.+++.. +.+.+++.+....+......+.+. .-...+.+.+.+.++|+|+..+-+...
T Consensus 5 ~~~IgvfDSGiGGLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~----~~~~~~~~~L~~~g~d~iVIaCNTa~~ 80 (261)
T PRK00865 5 NAPIGVFDSGVGGLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIR----ERTLEIVEFLLEYGVKMLVIACNTASA 80 (261)
T ss_pred CCeEEEEECCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHH----HHHHHHHHHHHhCCCCEEEEeCchHHH
Confidence 357999988844455667776653 666777654311111000001000 002334445556789999987665432
Q ss_pred HHHHHHHHHCCCCeeCCcHHHHH
Q 010065 161 SGLANKLVKAGIPTFGPSSEAAA 183 (519)
Q Consensus 161 ~~~a~~le~~gip~~g~~~~~~~ 183 (519)
..+.+.-+..++|++| -..++.
T Consensus 81 ~~l~~lr~~~~iPvig-i~~a~~ 102 (261)
T PRK00865 81 VALPDLRERYDIPVVG-IVPAIK 102 (261)
T ss_pred HHHHHHHHhCCCCEEe-eHHHHH
Confidence 2233334567999998 444443
No 155
>PLN02778 3,5-epimerase/4-reductase
Probab=75.40 E-value=13 Score=36.91 Aligned_cols=55 Identities=11% Similarity=-0.005 Sum_probs=36.9
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.+|+|||+|+.| ....+++.|.+. |++++... .+..+.+.+...++..++|.||-
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~-g~~V~~~~-----------------~~~~~~~~v~~~l~~~~~D~ViH 63 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQ-GIDFHYGS-----------------GRLENRASLEADIDAVKPTHVFN 63 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhC-CCEEEEec-----------------CccCCHHHHHHHHHhcCCCEEEE
Confidence 358999999765 456678888776 88765321 12234455666666678999995
No 156
>PLN02572 UDP-sulfoquinovose synthase
Probab=75.08 E-value=15 Score=38.79 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=46.6
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecC---CCC----CcCC------------------CCCccccCCCCC
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPG---NAG----ISNS------------------GDATCIPDLDVL 134 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~---~~~----~~~~------------------~~~~~v~~~d~~ 134 (519)
++++|||+|+.| ....+++.|.+. |++++.++.. +.. .... .....+ ..|..
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v-~~Dl~ 123 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKR-GYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELY-VGDIC 123 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEE-ECCCC
Confidence 457899999764 456688888877 8888876521 100 0000 011222 46888
Q ss_pred CHHHHHHHHHHcCCcEEEE
Q 010065 135 DGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 135 d~~~l~~~~~~~~id~Vi~ 153 (519)
|.+.+.++++..++|.||-
T Consensus 124 d~~~v~~~l~~~~~D~ViH 142 (442)
T PLN02572 124 DFEFLSEAFKSFEPDAVVH 142 (442)
T ss_pred CHHHHHHHHHhCCCCEEEE
Confidence 8888888888888999986
No 157
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=74.76 E-value=10 Score=37.74 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=55.5
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCcccc-CCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIP-DLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~-~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
++++|.|||.|.....+...+.+..+++.+.+...++.......+.... .....+.+.+++-..-.++|+||.......
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~ 82 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA 82 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH
Confidence 4689999999864445566666555777766543332211100011110 122345666654111157999998543333
Q ss_pred HHHHHHHHHHCCCCeeCCcHHH
Q 010065 160 VSGLANKLVKAGIPTFGPSSEA 181 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~ 181 (519)
-..++..+.+.|..++-.++..
T Consensus 83 H~e~a~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 83 HVRHAAKLREAGIRAIDLTPAA 104 (302)
T ss_pred HHHHHHHHHHcCCeEEECCccc
Confidence 3456667778898877555444
No 158
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=74.68 E-value=12 Score=38.10 Aligned_cols=70 Identities=16% Similarity=0.031 Sum_probs=46.9
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC----C---CCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN----S---GDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~---~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.++|+|+|+.| ....++..|.+. |++++.++.+...... . .....+ ..|..+.+.+.+++++.++|.|+-
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~d~vih 81 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLEL-GAEVYGYSLDPPTSPNLFELLNLAKKIEDH-FGDIRDAAKLRKAIAEFKPEIVFH 81 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHC-CCEEEEEeCCCccchhHHHHHhhcCCceEE-EccCCCHHHHHHHHhhcCCCEEEE
Confidence 47899999754 566788888877 8888776533221110 0 011122 468888888888888888999886
No 159
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=74.44 E-value=11 Score=29.13 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=38.9
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEE
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi 152 (519)
+|+|+|+|....+++..+++. |.++.++...+.... .+|+.-.+.+.+..++.+++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~~---------~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLLP---------GFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSST---------TSSHHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhhh---------hcCHHHHHHHHHHHHHCCCEEEe
Confidence 689999997777788888876 888888865432110 12322245566677777776554
No 160
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=73.74 E-value=1.4 Score=36.94 Aligned_cols=88 Identities=19% Similarity=0.179 Sum_probs=46.0
Q ss_pred cEEEEEeCChhHHHHHHHHHhc-CCCcEEEEecCCCCCcCCCCCccccCC-CCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 83 VVVLVIGGGGREHALCYALKRS-HSCDAVFCAPGNAGISNSGDATCIPDL-DVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~-~g~~~v~~~~~~~~~~~~~~~~~v~~~-d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
++|+|+|.|.........+.+. .+.+.+.+.+.++...... .... .+ -..+ +.++....++|+|+.......-
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~-~~~~-~~~~~~~---~~~ll~~~~~D~V~I~tp~~~h 75 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF-AEKY-GIPVYTD---LEELLADEDVDAVIIATPPSSH 75 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH-HHHT-TSEEESS---HHHHHHHTTESEEEEESSGGGH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH-HHHh-cccchhH---HHHHHHhhcCCEEEEecCCcch
Confidence 4799999996554444455554 4666554433322110000 0000 01 1123 3445556689999985444443
Q ss_pred HHHHHHHHHCCCCee
Q 010065 161 SGLANKLVKAGIPTF 175 (519)
Q Consensus 161 ~~~a~~le~~gip~~ 175 (519)
..++..+-+.|++++
T Consensus 76 ~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 76 AEIAKKALEAGKHVL 90 (120)
T ss_dssp HHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCEEE
Confidence 345566667788776
No 161
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=73.68 E-value=25 Score=30.46 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=22.8
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEE
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFC 112 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~ 112 (519)
+|+|+|.|+....+++.|.+. |+..+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv~~i~i 28 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GVGKITL 28 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEE
Confidence 589999998888889999877 8865544
No 162
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=73.58 E-value=13 Score=36.83 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=39.9
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|+|||+|+.| ....++..|.+. | +++.++... ..+ ..|..|.+.+.++.+..++|.||-
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~~~~~~---------~~~-~~Dl~d~~~~~~~~~~~~~D~Vih 60 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL-G-NLIALDVHS---------TDY-CGDFSNPEGVAETVRKIRPDVIVN 60 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhcc-C-CEEEecccc---------ccc-cCCCCCHHHHHHHHHhcCCCEEEE
Confidence 5899999854 455677777665 6 555443211 112 357788888888888888999995
No 163
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=73.56 E-value=32 Score=32.03 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=24.6
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEE
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFC 112 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~ 112 (519)
.+.+|+|+|.|+....+++.|.+. |+..+.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~l 50 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVI 50 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEE
Confidence 357899999998877889999877 8855444
No 164
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=73.12 E-value=27 Score=32.69 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=24.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
.++|+|+|+|.....-+..|.+. |.++++++|+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA-GAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 46899999996554456667665 8888877654
No 165
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=73.08 E-value=18 Score=31.11 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=25.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEE-ecC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFC-APG 115 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~-~~~ 115 (519)
..+|+|+|.|+....+++.|.+. |+..+.+ |++
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-CCCceeecCCc
Confidence 46899999998888889999888 8865544 443
No 166
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=72.89 E-value=23 Score=36.06 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=26.1
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEE-EecC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVF-CAPG 115 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~-~~~~ 115 (519)
.+.+|+|+|.|+....+++.|.+. |+..+. +|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 356899999999888889999887 885444 4443
No 167
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=72.63 E-value=84 Score=30.04 Aligned_cols=163 Identities=18% Similarity=0.251 Sum_probs=88.0
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHcCCcEEEE--C-C--
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKWSVGLVVV--G-P-- 155 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~--g-~-- 155 (519)
++|||+|+.| ....+++.|.+. |+++.....+....... ...... ..|..+.+.+....+ ++|.++. . .
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~~~~~~~~~~~v~~~-~~d~~~~~~l~~a~~--G~~~~~~i~~~~~~ 76 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRNPEAAAALAGGVEVV-LGDLRDPKSLVAGAK--GVDGVLLISGLLDG 76 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeCHHHHHhhcCCcEEE-EeccCCHhHHHHHhc--cccEEEEEeccccc
Confidence 4799999775 345678888887 88888776542111111 111222 456667777766554 4555443 3 1
Q ss_pred C----hhhHHHHHHHHHHCC--CC------eeCCc-HHHHHHhcCHHHHHHHHHHcCCCC----CCeeecCCHHHHHHHH
Q 010065 156 E----APLVSGLANKLVKAG--IP------TFGPS-SEAAALEGSKNFMKNLCDKYGIPT----AKYKTFTDPNAAKQYI 218 (519)
Q Consensus 156 E----~~~~~~~a~~le~~g--ip------~~g~~-~~~~~~~~dK~~~k~~l~~~Gi~~----p~~~~v~~~~~~~~~~ 218 (519)
+ ...........+..+ .+ .++.. ........+|...-+.+.+.|++. |++.............
T Consensus 77 ~~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~sg~~~t~lr~~~~~~~~~~~~~~~~ 156 (275)
T COG0702 77 SDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSSGIPYTTLRRAAFYLGAGAAFIEAA 156 (275)
T ss_pred ccchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCCccHHHHHHHHHHHHHHhcCCCeEEEecCeeeeccchhHHHHH
Confidence 1 111222333344433 22 22322 244567888999999999999984 3444443333323334
Q ss_pred HHhCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHH
Q 010065 219 QEEGAPIVVKADGLAAGKGVIVAMTLEEAYEAVDSML 255 (519)
Q Consensus 219 ~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~ 255 (519)
..-+.|++..+.. ..-.-..+++..++....
T Consensus 157 ~~~~~~~~~~~~~------~~~~i~~~d~a~~~~~~l 187 (275)
T COG0702 157 EAAGLPVIPRGIG------RLSPIAVDDVAEALAAAL 187 (275)
T ss_pred HhhCCceecCCCC------ceeeeEHHHHHHHHHHHh
Confidence 4445566555543 222234566666666554
No 168
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=72.00 E-value=2.2 Score=43.48 Aligned_cols=21 Identities=29% Similarity=0.592 Sum_probs=19.1
Q ss_pred CCceeccCCceeEEeccCCCc
Q 010065 33 NNLRFSVGPNFSISFNPQGSK 53 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~ 53 (519)
+|++|+..|.|+|||||+...
T Consensus 314 eai~~~~~pi~gVQfHPE~~~ 334 (354)
T PRK12838 314 EGLRHKKKPVLSVQFHPEAHP 334 (354)
T ss_pred EEEEECCCCEEEEEeCCCCCC
Confidence 689999999999999999854
No 169
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=71.91 E-value=15 Score=32.71 Aligned_cols=90 Identities=19% Similarity=0.285 Sum_probs=47.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcC--CCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE---CCC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSH--SCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV---GPE 156 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~--g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~---g~E 156 (519)
..+.+++|+++....+...+.+.. |++.+.+-++++..... ....++. ..+.+++.++++++++|-|+. ..+
T Consensus 77 ~~~~~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~-~~~~~~~--lg~~~~l~~~~~~~~id~v~ial~~~~ 153 (175)
T PF13727_consen 77 GRNVLIVGAGGAGRELAEALRSNPRLGYRVVGFVDDDPSDRGP-EIDGVPV--LGDLDDLPELVREHDIDEVIIALPWSE 153 (175)
T ss_dssp -EEEEEE--SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT--EETTEEE--E--GGGHHHHHHHHT--EEEE--TTS-
T ss_pred ccceEEEEEechHHHHHHHHHhhhhcCceEEEEEeCchhhccC-cccCcee--EcCHHHHHHHHHhCCCCEEEEEcCccC
Confidence 455577777765556677776543 77766554333211100 0001101 123567888999999998887 356
Q ss_pred hhhHHHHHHHHHHCCCCe
Q 010065 157 APLVSGLANKLVKAGIPT 174 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~ 174 (519)
...+..+.+.++..|+.+
T Consensus 154 ~~~i~~ii~~~~~~~v~v 171 (175)
T PF13727_consen 154 EEQIKRIIEELENHGVRV 171 (175)
T ss_dssp HHHHHHHHHHHHTTT-EE
T ss_pred HHHHHHHHHHHHhCCCEE
Confidence 666778888888888765
No 170
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=71.73 E-value=23 Score=32.85 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=40.5
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe-cCCCCCcCCCCCcccc--CCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA-PGNAGISNSGDATCIP--DLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~-~~~~~~~~~~~~~~v~--~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
..+|+|+|.|+....+++.|... |+..+.+. ++............+. .+.....+.+.+.+++.+++.-+-
T Consensus 21 ~s~VlIiG~gglG~evak~La~~-GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~ 94 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLS-GIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVS 94 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHc-CCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEE
Confidence 46899999998877889999887 89876553 3322111111100000 111112455666667777776553
No 171
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=71.67 E-value=14 Score=37.13 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=43.3
Q ss_pred cEEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCCCCCc-------CC--CCCccccCCCCCCHHHHHHHHHHcCCcEEE
Q 010065 83 VVVLVIGG-GGREHALCYALKRSHSCDAVFCAPGNAGIS-------NS--GDATCIPDLDVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 83 ~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~-------~~--~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi 152 (519)
|+|+|+|+ |.....+++.|.+. |++++.++....... .. .....+ ..|..|.+.+.++.+..++|+|+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILDNLCNSKRSVLPVIERLGGKHPTFV-EGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC-CCeEEEEecCCCchHhHHHHHHHhcCCCceEE-EccCCCHHHHHHHHhcCCCCEEE
Confidence 58999996 44556678888876 888877642211110 00 011122 46777888887777766899988
Q ss_pred E
Q 010065 153 V 153 (519)
Q Consensus 153 ~ 153 (519)
-
T Consensus 79 h 79 (338)
T PRK10675 79 H 79 (338)
T ss_pred E
Confidence 6
No 172
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=71.44 E-value=1.1e+02 Score=30.40 Aligned_cols=143 Identities=16% Similarity=0.140 Sum_probs=75.1
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCC-------CcEEEeCCHHHHHHHHHHHHh--h---ccC----------CCCCCcEEE
Q 010065 212 NAAKQYIQEEGAPIVVKADGLAAG-------KGVIVAMTLEEAYEAVDSMLL--K---NAF----------GSAGCRVII 269 (519)
Q Consensus 212 ~~~~~~~~~~g~P~VvKP~~g~gs-------~GV~~v~~~~el~~a~~~~~~--~---~~~----------~~~~~~~lv 269 (519)
+++.++++++|.-|+.|-..++-- .+...|.+..|+.-.++.--. + ..+ ......+++
T Consensus 75 ~~I~~aI~~lgg~VfpKlNwsaPkDa~wi~~~~sl~c~~~~dv~lLLksSd~i~~DL~~~~~~~~~~~~~~~~~~~~LvL 154 (299)
T PF07065_consen 75 QEIREAIEELGGSVFPKLNWSAPKDAAWINPNNSLKCTSPSDVYLLLKSSDRIAHDLDHAFDECEDEDSPDESIPYELVL 154 (299)
T ss_pred HHHHHHHHHcCCeEEEecCcCCccccchhccCCCceeCCHHHHHHHHHhChHHHHHHHhhhhhcccccCCCCCCceEEEE
Confidence 346778889998899997654422 234568888776654442110 0 000 012345777
Q ss_pred EeccCC---cEEEEEEEEeCCeeEEeccccccccccCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 010065 270 EEFLEG---EEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSVVMESIILPTVKGMSAEG 346 (519)
Q Consensus 270 Ee~I~G---~E~sv~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~i~~~a~~~~~~~~~a~g 346 (519)
-+|..- .||.|.+. ++ .++.+ +++....|++ |. +..+.+.+.+.+.....+ ...
T Consensus 155 rkw~~l~p~~EFRcFV~-~~-~LiaI--SQr~~~~~~~-----------------L~-~~~~~I~~~I~~F~~~~I-~~~ 211 (299)
T PF07065_consen 155 RKWVNLNPSMEFRCFVR-NR-KLIAI--SQRDLNYYDF-----------------LE-ELKEEIRSKIQEFFEEHI-KPK 211 (299)
T ss_pred eccccCCccceEEEEEE-CC-EEEEE--ecccccccHH-----------------HH-HHHHHHHHHHHHHHHHHH-Hhh
Confidence 888863 56666543 44 35433 2221122211 22 234444444433221211 122
Q ss_pred CCeeeEEEEEEEEEcCCCceEEEEEeCCCCCC
Q 010065 347 CKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDP 378 (519)
Q Consensus 347 ~~~~G~~~vdf~~~~~g~~~~viEiN~R~G~~ 378 (519)
+.. .-+-+|+.++.+.+++++||+||--..|
T Consensus 212 ~~~-~~~v~DVyi~~~~~~v~LID~NPf~~~T 242 (299)
T PF07065_consen 212 FPL-DNYVFDVYITRDKDKVWLIDFNPFGPRT 242 (299)
T ss_pred CCC-CCEEEEEEEcCCCCeEEEEEecCCcccC
Confidence 333 2344899999883379999999965443
No 173
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=71.33 E-value=2.1 Score=39.25 Aligned_cols=19 Identities=21% Similarity=0.523 Sum_probs=17.5
Q ss_pred CceeccCCceeEEeccCCC
Q 010065 34 NLRFSVGPNFSISFNPQGS 52 (519)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ 52 (519)
++||+..|-+.|||||+.-
T Consensus 157 ai~h~~~pi~gvQFHPESi 175 (191)
T COG0512 157 AVRHKKLPIYGVQFHPESI 175 (191)
T ss_pred EEeeCCCCEEEEecCCccc
Confidence 6889999999999999974
No 174
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=70.85 E-value=8.4 Score=38.89 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=51.3
Q ss_pred HHHHHHHHCCCCeeCCcHHHHHHhcCHHH-------HHHHH-HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCC
Q 010065 162 GLANKLVKAGIPTFGPSSEAAALEGSKNF-------MKNLC-DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLA 233 (519)
Q Consensus 162 ~~a~~le~~gip~~g~~~~~~~~~~dK~~-------~k~~l-~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~ 233 (519)
++.+...+-++-+. ++-...+..||.. .+.+| ++.-++..+++.+.+.++.....+.+. -+|+||+++.
T Consensus 222 GL~~A~r~G~V~ia--Na~G~gv~edkal~~~lp~~~r~~LgeellL~~VpT~~cg~~~~~~~Vl~~l~-~lvvKp~~g~ 298 (330)
T PF04174_consen 222 GLLEAYRAGNVVIA--NAPGSGVAEDKALYAFLPRMIRYYLGEELLLPNVPTWWCGDPEDREYVLANLD-ELVVKPADGY 298 (330)
T ss_dssp THHHHHHTTS-EEE--S-TTTHHHHSTTTGGGHHHHHHHHH-S--SSEE---EETTSHHHHHHHHHSGG-GEEEEE----
T ss_pred HHHHHHHhCCEEEE--CCCccchhcchhHHHHhHHHHHHHcCCCcccCCCCcEeCCCHHHHHHHHhchh-hcEEEecCCC
Confidence 34444444445444 3334445566642 33333 344567778888888888888887776 6999999999
Q ss_pred CCCcEEEeCCHH-HHHHHHHHHHhhccCCCCCCcEEEE
Q 010065 234 AGKGVIVAMTLE-EAYEAVDSMLLKNAFGSAGCRVIIE 270 (519)
Q Consensus 234 gs~GV~~v~~~~-el~~a~~~~~~~~~~~~~~~~~lvE 270 (519)
+|.|+.+-.... |..+..+++.+ ....++.|
T Consensus 299 gg~~~~~G~~~s~e~~~~~~~I~~------~P~~yVAQ 330 (330)
T PF04174_consen 299 GGKGVYIGPKLSAERRALRAEILA------RPHRYVAQ 330 (330)
T ss_dssp ----EEEGGG--HHHHHHHHHHHH------SGGGEEEE
T ss_pred CCCcceeCCcCCHHHHHHHHHHHh------CccCCccC
Confidence 999998854322 66677777654 23466655
No 175
>PRK07856 short chain dehydrogenase; Provisional
Probab=70.83 E-value=16 Score=34.98 Aligned_cols=70 Identities=24% Similarity=0.297 Sum_probs=42.7
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHH-----cCCcEEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRK-----WSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~-----~~id~Vi~ 153 (519)
.++++|+|++ +....++..|.+. |+++++++.+............+ ..|..+.+.+.++++. .++|++|.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 81 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAA-GATVVVCGRRAPETVDGRPAEFH-AADVRDPDQVAALVDAIVERHGRLDVLVN 81 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCChhhhhcCCceEEE-EccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4789999976 3556788888877 88887765432110000111223 5677776666655543 26899887
No 176
>PRK08309 short chain dehydrogenase; Provisional
Probab=70.81 E-value=18 Score=33.01 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=22.5
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
|+++|+|+.+....+++.|.+. |++++++.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~-G~~V~v~~ 30 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEK-GFHVSVIA 30 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-cCEEEEEE
Confidence 5789999776555678888876 88877664
No 177
>PRK11579 putative oxidoreductase; Provisional
Probab=70.68 E-value=9.2 Score=38.93 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=70.2
Q ss_pred CccEEEEEeCChhHH-HHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREH-ALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~-~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
.+++|.|||.|.... ..+..+.+..+++.+.+.+.+...... ..... .-..|.+++ +...++|+|+.......
T Consensus 3 ~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~--~~~~~~~el---l~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 3 DKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-DWPTV--TVVSEPQHL---FNDPNIDLIVIPTPNDT 76 (346)
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-hCCCC--ceeCCHHHH---hcCCCCCEEEEcCCcHH
Confidence 357999999996432 123444444577777664433211110 00000 012345554 44568999998544333
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeee---cCCHHHHHHHHH--HhCCCEEEEe
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKT---FTDPNAAKQYIQ--EEGAPIVVKA 229 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~---v~~~~~~~~~~~--~~g~P~VvKP 229 (519)
-..++..+-+.|.+++.-.|-+... .+=..+.+++++.|+..--... -.....+.++++ .+|-+..++.
T Consensus 77 H~~~~~~al~aGkhVl~EKPla~t~-~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~g~iG~i~~~~~ 150 (346)
T PRK11579 77 HFPLAKAALEAGKHVVVDKPFTVTL-SQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAEGVLGEVAYFES 150 (346)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCCCH-HHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 2244445557788887433332222 2223455667777766421111 112234555554 3565655543
No 178
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.65 E-value=18 Score=34.02 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=60.8
Q ss_pred CCccEEEEEeC--ChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCC-C--CccccCCCCCCHHHHHHHHHHc------CC
Q 010065 80 GQRVVVLVIGG--GGREHALCYALKRSHSCDAVFCAPGNAGISNSG-D--ATCIPDLDVLDGDAVISFCRKW------SV 148 (519)
Q Consensus 80 ~~~~~vliiG~--g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~-~--~~~v~~~d~~d~~~l~~~~~~~------~i 148 (519)
.+.++|||.|. ||..+++++.+.+. |+.++.....-.....+. + -..+ ..|..+.+.+.++..+. ++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~-G~~V~AtaR~~e~M~~L~~~~gl~~~-kLDV~~~~~V~~v~~evr~~~~Gkl 82 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARN-GYLVYATARRLEPMAQLAIQFGLKPY-KLDVSKPEEVVTVSGEVRANPDGKL 82 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhC-CeEEEEEccccchHhhHHHhhCCeeE-EeccCChHHHHHHHHHHhhCCCCce
Confidence 34689999984 45678899999988 998877654322111111 1 1111 45777766666554432 35
Q ss_pred cEEEEC-C---ChhhH-HHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcC
Q 010065 149 GLVVVG-P---EAPLV-SGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYG 199 (519)
Q Consensus 149 d~Vi~g-~---E~~~~-~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~G 199 (519)
|+++.. + -.+.+ ..+++.-.-+++.++| .+-++|.....+.++.|
T Consensus 83 d~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG------~irM~~a~~h~likaKG 132 (289)
T KOG1209|consen 83 DLLYNNAGQSCTFPALDATIAAVEQCFKVNVFG------HIRMCRALSHFLIKAKG 132 (289)
T ss_pred EEEEcCCCCCcccccccCCHHHHHhhhccceee------eehHHHHHHHHHHHccc
Confidence 666651 1 11100 0123333445677776 34456666665555554
No 179
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=70.08 E-value=2.6 Score=43.20 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.5
Q ss_pred CCceeccCCceeEEeccCCCcc
Q 010065 33 NNLRFSVGPNFSISFNPQGSKS 54 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~ 54 (519)
+|++|...|.|+|||||+...+
T Consensus 324 egi~~~~~pi~gVQfHPE~~~g 345 (360)
T PRK12564 324 EGLRHKDLPAFSVQYHPEASPG 345 (360)
T ss_pred EEEEECCCCEEEEEeCCcCCCC
Confidence 6899999999999999998643
No 180
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=69.75 E-value=30 Score=35.01 Aligned_cols=151 Identities=16% Similarity=0.268 Sum_probs=79.5
Q ss_pred ccccccccccccCCCccccccccccccCCCce-eccCCceeEEeccCCCccceeEE-EeeccCCCCCcccccCCCCCCCc
Q 010065 5 SYCLSPCVKLCSSSSTKCFQFQKPFASSNNLR-FSVGPNFSISFNPQGSKSSFFST-VKCLAQKSQPSVSVNAPTNAGQR 82 (519)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~-v~~GG~s~e~~vS~~s~~~~~~~ 82 (519)
.||.+---.+|-+-.. +| |..+-|-. +.+-|-.++--.|+.-. .-..| ++|.|..+-|-+.. .++...
T Consensus 98 ~~C~~G~E~~C~~~~~--~g----y~~~GGyaeyv~v~~~~~~~iP~~~d-~~~aApllCaGiT~y~alk~---~~~~pG 167 (339)
T COG1064 98 EYCRSGNENLCPNQKI--TG----YTTDGGYAEYVVVPARYVVKIPEGLD-LAEAAPLLCAGITTYRALKK---ANVKPG 167 (339)
T ss_pred ccccCcccccCCCccc--cc----eeecCcceeEEEEchHHeEECCCCCC-hhhhhhhhcCeeeEeeehhh---cCCCCC
Confidence 3666665666654222 22 23333444 45666666666666633 22222 45888777665554 244456
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC---cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChh
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI---SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAP 158 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~---~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~ 158 (519)
.+|+|+|.|+..|-.++. ++..|.+++.++.+.... ..+. ++.+ ++..|.+.+ +.+++. +|+++.. + ..
T Consensus 168 ~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~e~a~~lG-Ad~~--i~~~~~~~~-~~~~~~-~d~ii~tv~-~~ 240 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKLELAKKLG-ADHV--INSSDSDAL-EAVKEI-ADAIIDTVG-PA 240 (339)
T ss_pred CEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHHHHHHHhC-CcEE--EEcCCchhh-HHhHhh-CcEEEECCC-hh
Confidence 899999999887754444 444488888887543211 1111 1222 232232222 222222 8888873 4 44
Q ss_pred hHHHHHHHHHHCCC
Q 010065 159 LVSGLANKLVKAGI 172 (519)
Q Consensus 159 ~~~~~a~~le~~gi 172 (519)
.+....+.|...|.
T Consensus 241 ~~~~~l~~l~~~G~ 254 (339)
T COG1064 241 TLEPSLKALRRGGT 254 (339)
T ss_pred hHHHHHHHHhcCCE
Confidence 44445566666663
No 181
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=69.39 E-value=12 Score=40.58 Aligned_cols=137 Identities=16% Similarity=0.165 Sum_probs=69.1
Q ss_pred cccccccccCCCccccccccccccCCCceeccCCceeEEeccCCCc-cceeEEEeeccCCCCCc--ccccC-CCCCCCcc
Q 010065 8 LSPCVKLCSSSSTKCFQFQKPFASSNNLRFSVGPNFSISFNPQGSK-SSFFSTVKCLAQKSQPS--VSVNA-PTNAGQRV 83 (519)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~~GG~s~e~~--vS~~s-~~~~~~~~ 83 (519)
.++.+++.-++.++|--..++|-++.=||+.-.=. |+-.++ ..+.+..-++|..--.. +-..+ ..+..+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gK 81 (576)
T PLN03209 7 QSSAITTIPTSLTKCGFIEKPFLHGQLLRFPGFSK-----HPHSRKLRSLDIKAQASGATKFSSAAIEAIPKELDTKDED 81 (576)
T ss_pred cccccccccccccccccccCcccccceeecccccc-----CcccccccccchhhccccchhhhhhhhhccccccccCCCC
Confidence 36677777888888765566676665555442212 222211 11222222222211000 00001 12233457
Q ss_pred EEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC------------C-----CCCccccCCCCCCHHHHHHHHHH
Q 010065 84 VVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN------------S-----GDATCIPDLDVLDGDAVISFCRK 145 (519)
Q Consensus 84 ~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~------------~-----~~~~~v~~~d~~d~~~l~~~~~~ 145 (519)
.|+|+|+.| ....++..|.+. |++++.+..+...... . .....+ ..|..|.+.+.+.+
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~-G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV-~gDLtD~esI~~aL-- 157 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKL-GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIV-ECDLEKPDQIGPAL-- 157 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEE-EecCCCHHHHHHHh--
Confidence 899999754 456678888776 8887766533111100 0 001122 46777777765544
Q ss_pred cCCcEEEE
Q 010065 146 WSVGLVVV 153 (519)
Q Consensus 146 ~~id~Vi~ 153 (519)
.++|+||.
T Consensus 158 ggiDiVVn 165 (576)
T PLN03209 158 GNASVVIC 165 (576)
T ss_pred cCCCEEEE
Confidence 35788876
No 182
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.36 E-value=12 Score=34.59 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=46.1
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCC-Cc---EEEEecCCCCCcCCCCCccccCCCCC--CHHHHHHHHHHcCCcEEEEC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHS-CD---AVFCAPGNAGISNSGDATCIPDLDVL--DGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g-~~---~v~~~~~~~~~~~~~~~~~v~~~d~~--d~~~l~~~~~~~~id~Vi~g 154 (519)
.|.||.|+|+|....++..++.++.+ ++ -+-++|..++.... ..+ -+.+. ..+.|+..-...++|+||-.
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglara---arl-gv~tt~egv~~ll~~p~~~di~lvfda 78 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARA---ARL-GVATTHEGVIGLLNMPEFADIDLVFDA 78 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHH---Hhc-CCcchhhHHHHHHhCCCCCCcceEEec
Confidence 47899999999766667777766621 12 12344554443322 111 11111 13444444344567788863
Q ss_pred CChhhHHHHHHHHHHCCCCee
Q 010065 155 PEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~ 175 (519)
...+.-...+..+.+.|+|.+
T Consensus 79 tsa~~h~~~a~~~ae~gi~~i 99 (310)
T COG4569 79 TSAGAHVKNAAALAEAGIRLI 99 (310)
T ss_pred cccchhhcchHhHHhcCCcee
Confidence 322222223444666677755
No 183
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=69.14 E-value=24 Score=36.30 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=43.1
Q ss_pred CCCccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCC-CcCCC-CCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 79 AGQRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAG-ISNSG-DATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 79 ~~~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~~-~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+..+|+|+|+|+.| ....++..|.+. |++++.++..... ..... ....+ ..|..|.+.+..+++ ++|.||-
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~-G~~V~~v~r~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~--~~D~Vih 91 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAE-GHYIIASDWKKNEHMSEDMFCHEFH-LVDLRVMENCLKVTK--GVDHVFN 91 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhC-CCEEEEEEeccccccccccccceEE-ECCCCCHHHHHHHHh--CCCEEEE
Confidence 34678999999854 456788888876 8888877532111 11000 01122 357777766665554 5788886
No 184
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=68.88 E-value=19 Score=36.42 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=45.6
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCC-----CcCC---------CCCccccCCCCCCHHHHHHHHHHcC
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAG-----ISNS---------GDATCIPDLDVLDGDAVISFCRKWS 147 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~-----~~~~---------~~~~~v~~~d~~d~~~l~~~~~~~~ 147 (519)
++|||+|+.| ....++..|.+. |++++.++..... .... .....+ ..|..|.+.+.++++..+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEK-GYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLH-YGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHC-CCEEEEEecCCcccchhhhhhhhhccccccccceeEE-EeccCCHHHHHHHHHhCC
Confidence 5799999754 556688888877 8988877533210 0000 001122 468888888888888888
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|.||-
T Consensus 79 ~d~ViH 84 (343)
T TIGR01472 79 PTEIYN 84 (343)
T ss_pred CCEEEE
Confidence 999886
No 185
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=68.30 E-value=17 Score=34.74 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=25.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+.+|+|+|.|+....++..|.+. |+..+.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~-GVg~i~Lv 41 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS-GVGKLTLI 41 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCEEEEE
Confidence 56899999998877788999887 88665553
No 186
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=68.27 E-value=21 Score=33.86 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=43.6
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCCcCCCCCcccc-CCCCCCHHHHHHHHHHcCCcEEEECCCh-h
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGISNSGDATCIP-DLDVLDGDAVISFCRKWSVGLVVVGPEA-P 158 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~~~~~~~~~v~-~~d~~d~~~l~~~~~~~~id~Vi~g~E~-~ 158 (519)
.++|||+|+|.....-+..|.+. |-++.++.|.- +..........+. .-...+...+ .+.+.||...+| .
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl------~g~~LViaATdD~~ 97 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK-GCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFI------KDKHLIVIATDDEK 97 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHh------CCCcEEEECCCCHH
Confidence 57899999996433334555554 77888776652 1110000000010 0001111222 356777775444 4
Q ss_pred hHHHHHHHHHHCCCCee
Q 010065 159 LVSGLANKLVKAGIPTF 175 (519)
Q Consensus 159 ~~~~~a~~le~~gip~~ 175 (519)
+...+++.++..++++.
T Consensus 98 vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 98 LNNKIRKHCDRLYKLYI 114 (223)
T ss_pred HHHHHHHHHHHcCCeEE
Confidence 44556666666676654
No 187
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=67.95 E-value=10 Score=39.20 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=53.7
Q ss_pred HHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEE--eCCHHHHHHHHHHHHhhccCCCCCCcEEEEecc
Q 010065 196 DKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIV--AMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFL 273 (519)
Q Consensus 196 ~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~--v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I 273 (519)
++.-++.++++.+...+++...++.+. -+||||..++++.|..+ .-+.+|+.+..+++.+ ....++.|+-+
T Consensus 340 e~~lL~nv~T~~c~~~~el~~VL~~l~-~lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a------~p~~~IaQ~~~ 412 (488)
T COG2308 340 EEPLLPNVPTYWCGEPDELEHVLANLS-ELVIKPVEGSGGYGMLVGPAASKAELAAFAERIKA------DPENYIAQPVL 412 (488)
T ss_pred cccccCCCCeeecCCHHHHHHHHhchh-hheEeeeccCCCCcceeccccCHHHHHHHHHHHHh------Chhhhcccccc
Confidence 455688899999999999888777664 69999999887777655 5677888777777654 33566766655
Q ss_pred C
Q 010065 274 E 274 (519)
Q Consensus 274 ~ 274 (519)
.
T Consensus 413 ~ 413 (488)
T COG2308 413 Q 413 (488)
T ss_pred c
Confidence 4
No 188
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.81 E-value=5.5 Score=41.25 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=31.8
Q ss_pred eecCCHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCCHHHHHH
Q 010065 206 KTFTDPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMTLEEAYE 249 (519)
Q Consensus 206 ~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~~~el~~ 249 (519)
..-....++.+..+.+.-|+++||..|.-|.|++.+++..+..+
T Consensus 210 ~lPa~l~df~a~~~~~KrtfivkpDsgaqg~giylisDir~~g~ 253 (565)
T KOG2158|consen 210 RLPAPLCDFPASTEIMKRTFIVKPDSGAQGSGIYLISDIREKGE 253 (565)
T ss_pred cCchHHHHHHHHHHHhcccEEECCCCCCCCcceeeechhhhhhH
Confidence 33334455555566666799999999999999999976655443
No 189
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=67.49 E-value=54 Score=33.53 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=25.7
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+.+|+|+|.|+....+++.|... |+..+.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~-Gvg~i~lv 58 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGA-GVGHITII 58 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 46899999999888889999877 88776654
No 190
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=67.22 E-value=38 Score=33.06 Aligned_cols=111 Identities=19% Similarity=0.175 Sum_probs=60.5
Q ss_pred cEEEEEe-CChhHHHHHHHHHhcCCCcEEEEec-CCCCCcCCCCCcccc-----CC-CCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIG-GGGREHALCYALKRSHSCDAVFCAP-GNAGISNSGDATCIP-----DL-DVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG-~g~~~~~l~~~l~~~~g~~~v~~~~-~~~~~~~~~~~~~v~-----~~-d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
++|.|+| .|.....++..+.+..+++.+.+.+ .++..... +...+. .+ -..|++.+ ..++|+|+-.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~-~~~~~~~~~~~gv~~~~d~~~l-----~~~~DvVIdf 75 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGT-DAGELAGIGKVGVPVTDDLEAV-----ETDPDVLIDF 75 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCC-CHHHhcCcCcCCceeeCCHHHh-----cCCCCEEEEC
Confidence 6899999 5865666777777666888776543 22211100 000000 01 12344444 2458988875
Q ss_pred CChhhHHHHHHHHHHCCCCee-CCcHHHHHHhcCHHHHHHHHHHcCCCC
Q 010065 155 PEAPLVSGLANKLVKAGIPTF-GPSSEAAALEGSKNFMKNLCDKYGIPT 202 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~-g~~~~~~~~~~dK~~~k~~l~~~Gi~~ 202 (519)
+-.......+..+-+.|++++ |.+. . ...+...+.+..++.|++.
T Consensus 76 T~p~~~~~~~~~al~~g~~vVigttg--~-~~e~~~~l~~aA~~~g~~v 121 (266)
T TIGR00036 76 TTPEGVLNHLKFALEHGVRLVVGTTG--F-SEEDKQELADLAEKAGIAA 121 (266)
T ss_pred CChHHHHHHHHHHHHCCCCEEEECCC--C-CHHHHHHHHHHHhcCCccE
Confidence 433333355666778899987 3321 1 1123455666777777664
No 191
>PLN02240 UDP-glucose 4-epimerase
Probab=66.82 E-value=30 Score=34.92 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=44.7
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc------------CCCCCccccCCCCCCHHHHHHHHHHcCC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS------------NSGDATCIPDLDVLDGDAVISFCRKWSV 148 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~------------~~~~~~~v~~~d~~d~~~l~~~~~~~~i 148 (519)
+++|+|+|+. .....+++.|.+. |++++.++....... .......+ ..|..|.+.+.++.++.++
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLA-GYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFH-KVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCcchHHHHHHHHHhhcccCccceEE-ecCcCCHHHHHHHHHhCCC
Confidence 4789999975 4556788888876 888777642211000 00011222 5678888888887777789
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|.|+-
T Consensus 83 d~vih 87 (352)
T PLN02240 83 DAVIH 87 (352)
T ss_pred CEEEE
Confidence 98886
No 192
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=66.57 E-value=33 Score=31.52 Aligned_cols=90 Identities=24% Similarity=0.290 Sum_probs=51.4
Q ss_pred CccEEEEEeCChhHHHHHHHH-HhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 81 QRVVVLVIGGGGREHALCYAL-KRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l-~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
+..++.|+|.|...++++-.- .+..+.+.+..-+-++.... ..+..+...+.+.+...+++.+++..+..--...
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG----~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~ 158 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVG----TKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH 158 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhC----cccCCeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence 356899999996433332221 11225555444222221100 0111234456788888999999997776422223
Q ss_pred HHHHHHHHHHCCCCe
Q 010065 160 VSGLANKLVKAGIPT 174 (519)
Q Consensus 160 ~~~~a~~le~~gip~ 174 (519)
.|..++.|.+.|+.-
T Consensus 159 AQ~vad~Lv~aGVkG 173 (211)
T COG2344 159 AQEVADRLVKAGVKG 173 (211)
T ss_pred HHHHHHHHHHcCCce
Confidence 467899999999884
No 193
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=66.13 E-value=24 Score=35.49 Aligned_cols=70 Identities=13% Similarity=0.012 Sum_probs=45.6
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCC-----CcCC--------CCCccccCCCCCCHHHHHHHHHHcC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAG-----ISNS--------GDATCIPDLDVLDGDAVISFCRKWS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~-----~~~~--------~~~~~v~~~d~~d~~~l~~~~~~~~ 147 (519)
.++|||+|+. .....+++.|.+. |++++.++..... .... .....+ ..|..|.+.+.++.+..+
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSK-GYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLH-YGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC-CCEEEEEecccccccccchhhhccccccccCceEEE-EecCCCHHHHHHHHHHcC
Confidence 4789999975 3556788888877 8988776532110 0000 001122 468888888888888778
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|.|+-
T Consensus 84 ~d~Vih 89 (340)
T PLN02653 84 PDEVYN 89 (340)
T ss_pred CCEEEE
Confidence 999886
No 194
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=66.12 E-value=44 Score=35.26 Aligned_cols=92 Identities=24% Similarity=0.214 Sum_probs=50.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC---CccccCCCCCCHHHHHHHHHHcCCcEEEE--C--
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD---ATCIPDLDVLDGDAVISFCRKWSVGLVVV--G-- 154 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~---~~~v~~~d~~d~~~l~~~~~~~~id~Vi~--g-- 154 (519)
.+||+|+|-|......+..|.+. |.++.+.|........... ...+ .+....... .....+|.|+. |
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~-G~~v~v~D~~~~~~~~~~~~~~~~~i-~~~~g~~~~----~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL-GAEVTVSDDRPAPEGLAAQPLLLEGI-EVELGSHDD----EDLAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC-CCeEEEEcCCCCccchhhhhhhccCc-eeecCccch----hccccCCEEEECCCCC
Confidence 68999999886666788888887 8888777533211100000 1111 111111001 12245788886 3
Q ss_pred CChhhHHHHHHHHHHCCCCeeCCcHHHHHH
Q 010065 155 PEAPLVSGLANKLVKAGIPTFGPSSEAAAL 184 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~g~~~~~~~~ 184 (519)
.... +.+.....|+|++| +.+....
T Consensus 81 ~~~p----~v~~A~~~gi~i~~-dieL~~r 105 (448)
T COG0771 81 PTHP----LVEAAKAAGIEIIG-DIELFYR 105 (448)
T ss_pred CCCH----HHHHHHHcCCcEEe-HHHHHHH
Confidence 3333 34447788999984 5554443
No 195
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=65.66 E-value=20 Score=34.96 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=39.5
Q ss_pred EEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 84 VVLVIGG-GGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 84 ~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
||+|+|+ |.....+++.|.+. |++++.+... ..|..+.+.+.+.++..++|.|+-
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r~--------------~~d~~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-GRVVVALTSS--------------QLDLTDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeCCc--------------ccCCCCHHHHHHHHHhCCCCEEEE
Confidence 5899997 44556678888776 8887665321 235567788888888778899986
No 196
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=65.58 E-value=3.3 Score=42.71 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=19.2
Q ss_pred CCceeccCCceeEEeccCCCc
Q 010065 33 NNLRFSVGPNFSISFNPQGSK 53 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~ 53 (519)
+|++|..+|.|+|||||+...
T Consensus 338 egi~h~~~pi~gVQFHPE~~~ 358 (382)
T CHL00197 338 AGISHSPKPYFSVQYHPEASP 358 (382)
T ss_pred EEEEECCCCcEEEeeCCCCCC
Confidence 699999999999999999854
No 197
>PRK05993 short chain dehydrogenase; Provisional
Probab=65.46 E-value=15 Score=35.77 Aligned_cols=70 Identities=10% Similarity=0.155 Sum_probs=42.0
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCCccccCCCCCCHHHHHHHHHH------cCCcEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS--GDATCIPDLDVLDGDAVISFCRK------WSVGLVV 152 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~~~v~~~d~~d~~~l~~~~~~------~~id~Vi 152 (519)
.++++|+|++ +....++..|.+. |++++.++.+....... .....+ ..|..|.+.+.+++++ .++|.++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~-G~~Vi~~~r~~~~~~~l~~~~~~~~-~~Dl~d~~~~~~~~~~~~~~~~g~id~li 81 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSD-GWRVFATCRKEEDVAALEAEGLEAF-QLDYAEPESIAALVAQVLELSGGRLDALF 81 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCceEE-EccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence 4679999974 4566788888876 88887775432111100 011223 5677776665555443 2589888
Q ss_pred E
Q 010065 153 V 153 (519)
Q Consensus 153 ~ 153 (519)
.
T Consensus 82 ~ 82 (277)
T PRK05993 82 N 82 (277)
T ss_pred E
Confidence 7
No 198
>PRK06398 aldose dehydrogenase; Validated
Probab=65.28 E-value=28 Score=33.51 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=42.0
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHH-----cCCcEEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRK-----WSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~-----~~id~Vi~ 153 (519)
.++++|+|++ +....++..|.+. |++++.++.+..... ....+ ..|..|.+.+.+++++ .++|+++.
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~-G~~Vi~~~r~~~~~~---~~~~~-~~D~~~~~~i~~~~~~~~~~~~~id~li~ 78 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEE-GSNVINFDIKEPSYN---DVDYF-KVDVSNKEQVIKGIDYVISKYGRIDILVN 78 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCccccC---ceEEE-EccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4689999976 4556788888877 888877653321111 11223 5677776666555543 26899887
No 199
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=65.26 E-value=26 Score=35.48 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=43.2
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCC--C-Cc---CC---CCCccccCCCCCCHHHHHHHHHHcCCcEEE
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNA--G-IS---NS---GDATCIPDLDVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~--~-~~---~~---~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi 152 (519)
++|||+|+.| ....+++.|.+. |++++.+..... + .. .. .....+ ..|..|.+.+.++.++.++|.||
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINE-TSDAVVVVDKLTYAGNLMSLAPVAQSERFAFE-KVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHc-CCCEEEEEecCccccchhhhhhcccCCceEEE-ECCCcChHHHHHHHhhcCCCEEE
Confidence 6899999754 456688888877 777554422211 1 00 00 011122 46778888888888777899998
Q ss_pred E
Q 010065 153 V 153 (519)
Q Consensus 153 ~ 153 (519)
-
T Consensus 80 h 80 (355)
T PRK10217 80 H 80 (355)
T ss_pred E
Confidence 7
No 200
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=64.67 E-value=28 Score=29.61 Aligned_cols=88 Identities=15% Similarity=0.093 Sum_probs=43.7
Q ss_pred cEEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCCC-CCcCCCCCc-----cccCCCCCCHHHHHHHHHHcCCcEEEECC
Q 010065 83 VVVLVIGG-GGREHALCYALKRSHSCDAVFCAPGNA-GISNSGDAT-----CIPDLDVLDGDAVISFCRKWSVGLVVVGP 155 (519)
Q Consensus 83 ~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~~-~~~~~~~~~-----~v~~~d~~d~~~l~~~~~~~~id~Vi~g~ 155 (519)
+||+|+|. |...+.++..+.+..+++.+.....+. .....+..+ .....-..+.+.+ ..+ +|+++=.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~---~~~--~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEEL---LEE--ADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHH---TTH---SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHh---ccc--CCEEEEcC
Confidence 58999999 655677888888866887666543322 111000000 0000011234443 333 78777543
Q ss_pred ChhhHHHHHHHHHHCCCCee
Q 010065 156 EAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 156 E~~~~~~~a~~le~~gip~~ 175 (519)
-........+.+.+.|+|++
T Consensus 76 ~p~~~~~~~~~~~~~g~~~V 95 (124)
T PF01113_consen 76 NPDAVYDNLEYALKHGVPLV 95 (124)
T ss_dssp -HHHHHHHHHHHHHHT-EEE
T ss_pred ChHHhHHHHHHHHhCCCCEE
Confidence 22223345555666788875
No 201
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=64.32 E-value=42 Score=34.70 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=48.8
Q ss_pred CccEEEEEeCChh-HHHHHHHHHhcCCCcEEEEecC-CCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChh
Q 010065 81 QRVVVLVIGGGGR-EHALCYALKRSHSCDAVFCAPG-NAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAP 158 (519)
Q Consensus 81 ~~~~vliiG~g~~-~~~l~~~l~~~~g~~~v~~~~~-~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~ 158 (519)
+++||.|+|+.|. ...+.+.|.++...+...+... ..+.........+...+..+.+.+... .-.+.|+||.....+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~-~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDA-DFSDVDAVFCCLPHG 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHH-HhcCCCEEEEcCCHH
Confidence 4679999998753 4667888887777777766543 222110000101101111111111111 114689999854444
Q ss_pred hHHHHHHHHHHCCCCee
Q 010065 159 LVSGLANKLVKAGIPTF 175 (519)
Q Consensus 159 ~~~~~a~~le~~gip~~ 175 (519)
....++..++ .|.+++
T Consensus 116 ~s~~i~~~~~-~g~~VI 131 (381)
T PLN02968 116 TTQEIIKALP-KDLKIV 131 (381)
T ss_pred HHHHHHHHHh-CCCEEE
Confidence 4445656564 687777
No 202
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=64.27 E-value=1.2e+02 Score=28.73 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHcCCcEEEE---CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCH
Q 010065 135 DGDAVISFCRKWSVGLVVV---GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDP 211 (519)
Q Consensus 135 d~~~l~~~~~~~~id~Vi~---g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~ 211 (519)
..+-+...++..++..+.. +..+.....+.+.+...|+..+-. -++.....|.+..+.+.++|+..-...-=.+.
T Consensus 46 ~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~--GdI~s~~qr~~~e~v~~~lgl~~~~PLW~~~~ 123 (223)
T TIGR00290 46 NAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVF--GAIYSEYQKTRIERVCRELGLKSFAPLWHRDP 123 (223)
T ss_pred CHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEE--CCcccHHHHHHHHHHHHhcCCEEeccccCCCH
Confidence 4455656677777776542 334445567777788888764311 12333345888899999999966221112344
Q ss_pred HHHHHHHHHhCCCEEEEeCCC
Q 010065 212 NAAKQYIQEEGAPIVVKADGL 232 (519)
Q Consensus 212 ~~~~~~~~~~g~P~VvKP~~g 232 (519)
+++.+-.-..||.+++.-++.
T Consensus 124 ~~ll~e~i~~G~~aiIv~v~a 144 (223)
T TIGR00290 124 EKLMEEFVEEKFEARIIAVAA 144 (223)
T ss_pred HHHHHHHHHcCCeEEEEEEec
Confidence 444433346788877766543
No 203
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=64.14 E-value=81 Score=29.89 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=25.5
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+.+|+|+|.|+....+++.|.+. |+..+.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lv 51 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLV 51 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEE
Confidence 56899999998887889999887 88766553
No 204
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=64.01 E-value=1.2e+02 Score=27.99 Aligned_cols=138 Identities=13% Similarity=0.186 Sum_probs=71.1
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE---CCChhhH
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV---GPEAPLV 160 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~---g~E~~~~ 160 (519)
|+++.-+||....++..+....|++++.+.-..+... ... .....+.+.+...++..++..++. +......
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~-----~~~-~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~ 74 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEG-----SSM-MYHTVNHELLELQAEAMGIPLIRIEISGEEEDEV 74 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCEEEEEEEEecCCC-----Ccc-cccccCHHHHHHHHHHcCCcEEEEeCCCCchHHH
Confidence 4566667765433333333334887765542211100 000 112235677778888888876655 2222233
Q ss_pred HHHHHHHHHC---CCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCC--CCeeecCCHHHHHHHHHHhCCCEEEEeCC
Q 010065 161 SGLANKLVKA---GIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT--AKYKTFTDPNAAKQYIQEEGAPIVVKADG 231 (519)
Q Consensus 161 ~~~a~~le~~---gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~--p~~~~v~~~~~~~~~~~~~g~P~VvKP~~ 231 (519)
..+.+.+.+. |+..+-.+...+ -..|.+..+.+.++|+.. |-|. .+.+++.+-.-..||.+++.-+.
T Consensus 75 ~~l~~~l~~~~~~g~~~vv~G~i~s--d~~~~~~e~~~~~~gl~~~~PLW~--~~~~~ll~e~~~~g~~~~iv~v~ 146 (194)
T cd01994 75 EDLKELLRKLKEEGVDAVVFGAILS--EYQRTRVERVCERLGLEPLAPLWG--RDQEELLREMIEAGFKAIIIKVA 146 (194)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccc--HHHHHHHHHHHHHcCCEEEecccC--CCHHHHHHHHHHcCCeEEEEEec
Confidence 3443334322 576432222222 235888889999999965 3332 24444444344678886665544
No 205
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=63.77 E-value=61 Score=33.44 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=24.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
..+|+|+|.|+....++..|.+. |+..+.+.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~-Gvg~i~lv 165 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAA-GVGTLGIV 165 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 46899999999887888999877 88665553
No 206
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=63.74 E-value=73 Score=29.94 Aligned_cols=88 Identities=18% Similarity=0.185 Sum_probs=45.4
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC-CCCcCCCCCccccCC-CCCCHHHHHHHHHHcCCcEEEECC-Ch
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN-AGISNSGDATCIPDL-DVLDGDAVISFCRKWSVGLVVVGP-EA 157 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~-~~~~~~~~~~~v~~~-d~~d~~~l~~~~~~~~id~Vi~g~-E~ 157 (519)
+.++|+|+|+|.....-++.+.+. |-+++++.+.- +..........+..+ +..+.+.+ .+++.||... +.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~-ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~------~~~~lviaAt~d~ 83 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKA-GADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL------DDAFLVIAATDDE 83 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhh------cCceEEEEeCCCH
Confidence 457999999996443335555555 77777776542 100000000000000 11112222 1366777754 44
Q ss_pred hhHHHHHHHHHHCCCCee
Q 010065 158 PLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~ 175 (519)
.+.+.+.+.++..++++.
T Consensus 84 ~ln~~i~~~a~~~~i~vN 101 (210)
T COG1648 84 ELNERIAKAARERRILVN 101 (210)
T ss_pred HHHHHHHHHHHHhCCcee
Confidence 555667777888888864
No 207
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=63.68 E-value=29 Score=35.33 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=47.5
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCC-CCCcCCCCCcccc---CCCCCCHHHHHHHHHHcCCcEEEECCC
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGN-AGISNSGDATCIP---DLDVLDGDAVISFCRKWSVGLVVVGPE 156 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~-~~~~~~~~~~~v~---~~d~~d~~~l~~~~~~~~id~Vi~g~E 156 (519)
+++|.|+|++| ....++..|.+..+++.+.+.... .+.........+. ..+..+.+. . ...++|+||....
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~---~-~~~~vD~Vf~alP 77 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDP---E-ILAGADVVFLALP 77 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCH---H-HhcCCCEEEECCC
Confidence 47999999743 445567777776677776654421 1111000001010 001111211 1 2246899998544
Q ss_pred hhhHHHHHHHHHHCCCCeeC
Q 010065 157 APLVSGLANKLVKAGIPTFG 176 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~~g 176 (519)
+..-..++..+.+.|++++-
T Consensus 78 ~~~~~~~v~~a~~aG~~VID 97 (343)
T PRK00436 78 HGVSMDLAPQLLEAGVKVID 97 (343)
T ss_pred cHHHHHHHHHHHhCCCEEEE
Confidence 44444556666668998873
No 208
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=63.61 E-value=24 Score=34.99 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=41.8
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCC--CCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSG--DATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~--~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
++|+|+|+.| ....+++.|.+. |++++.++.......... ....+ ..|..|.+.+.++++ ++|.|+-
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~-~~D~~~~~~l~~~~~--~~d~vi~ 70 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ-GEEVRVLVRPTSDRRNLEGLDVEIV-EGDLRDPASLRKAVA--GCRALFH 70 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC-CCEEEEEEecCccccccccCCceEE-EeeCCCHHHHHHHHh--CCCEEEE
Confidence 4799999753 456688888877 888777764322111111 12223 567788777777665 5787775
No 209
>PRK08223 hypothetical protein; Validated
Probab=63.26 E-value=55 Score=32.38 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=26.3
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
+.+|+|+|.||...+++..|... |+..+.+.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD 58 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARL-GIGKFTIAD 58 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEe
Confidence 46899999999888889999877 888776643
No 210
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=63.25 E-value=72 Score=29.97 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=24.5
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFC 112 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~ 112 (519)
+.+|+|+|.|+....++..|.+. |+..+.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~l 57 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKL 57 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCeEEE
Confidence 56899999998887889999877 8875544
No 211
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=63.08 E-value=33 Score=33.49 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=42.8
Q ss_pred cEEEEEeCChhHHHHHHHHHhcC-CCcEEEEecCCCCC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 83 VVVLVIGGGGREHALCYALKRSH-SCDAVFCAPGNAGI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~-g~~~v~~~~~~~~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
++|.|+|.|.....++..+.+.. +++.+.+.+.++.. .... .........+.++++ .++|+|+...-....
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a--~~~~~~~~~~~~ell-----~~~DvVvi~a~~~~~ 74 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLA--SKTGAKACLSIDELV-----EDVDLVVECASVNAV 74 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHH--HhcCCeeECCHHHHh-----cCCCEEEEcCChHHH
Confidence 68999999966555677766542 45555443322211 0000 000000123444443 368999874322222
Q ss_pred HHHHHHHHHCCCCeeC
Q 010065 161 SGLANKLVKAGIPTFG 176 (519)
Q Consensus 161 ~~~a~~le~~gip~~g 176 (519)
..+...+-+.|..++-
T Consensus 75 ~~~~~~al~~Gk~Vvv 90 (265)
T PRK13304 75 EEVVPKSLENGKDVII 90 (265)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 2333334456877763
No 212
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=62.84 E-value=1.1e+02 Score=28.22 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=25.9
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
+.+|+|+|.|+....+++.|... |+..+.+.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~-GVg~i~lvD 50 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA-GIDSITIVD 50 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEE
Confidence 46899999998877889999887 898765543
No 213
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=62.83 E-value=12 Score=35.21 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=44.9
Q ss_pred EEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCC---CCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 85 VLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNS---GDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 85 vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~---~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|||+|+.| ....++..|.+. |++++.+.......... .....+ ..|..|.+.+.++.+..++|.|+-
T Consensus 1 IlI~GatG~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~-~~dl~~~~~~~~~~~~~~~d~vi~ 71 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKK-GHEVIVLSRSSNSESFEEKKLNVEFV-IGDLTDKEQLEKLLEKANIDVVIH 71 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TTEEEEEESCSTGGHHHHHHTTEEEE-ESETTSHHHHHHHHHHHTESEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHc-CCccccccccccccccccccceEEEE-EeeccccccccccccccCceEEEE
Confidence 78999775 456788888877 88876554332211100 011222 567888899999999889999987
No 214
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=62.54 E-value=36 Score=32.11 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=68.3
Q ss_pred EEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCC--CcC--CCCCccccCCCCCCHHHHHHHHHHcCCcEEEE--CC--
Q 010065 85 VLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAG--ISN--SGDATCIPDLDVLDGDAVISFCRKWSVGLVVV--GP-- 155 (519)
Q Consensus 85 vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~--~~~--~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~--g~-- 155 (519)
|+|+|+.| ....++.+|.+. ++++..+..+... ... ......+ ..|..|.+.|.+..+ ++|.||. +.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~~~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~~~~~~l~~al~--g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-GFSVRALVRDPSSDRAQQLQALGAEVV-EADYDDPESLVAALK--GVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TGCEEEEESSSHHHHHHHHHHTTTEEE-ES-TT-HHHHHHHHT--TCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHhC-CCCcEEEEeccchhhhhhhhcccceEe-ecccCCHHHHHHHHc--CCceEEeecCcch
Confidence 68999754 456788888875 8888777543211 110 0112333 578888888877775 7888887 21
Q ss_pred Chh--hHHHHHHHHHHCCCCeeC-----CcH-------HHHHHhcCHHHHHHHHHHcCCCC
Q 010065 156 EAP--LVSGLANKLVKAGIPTFG-----PSS-------EAAALEGSKNFMKNLCDKYGIPT 202 (519)
Q Consensus 156 E~~--~~~~~a~~le~~gip~~g-----~~~-------~~~~~~~dK~~~k~~l~~~Gi~~ 202 (519)
+.. ....+.+.+.+.|++.+- ... ........|....+.+++.|++.
T Consensus 77 ~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~ 137 (233)
T PF05368_consen 77 PSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPY 137 (233)
T ss_dssp CCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEB
T ss_pred hhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccc
Confidence 222 233566777777876532 111 13445567888889999987764
No 215
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=62.30 E-value=70 Score=33.89 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=49.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhc--CCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-C--C
Q 010065 82 RVVVLVIGGGGREHALCYALKRS--HSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-P--E 156 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~--~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~--E 156 (519)
+.+++|+|+|.....++..+.+. .|++.+.+-++++..... ....++.. .+ +++.+.++++++|.|+.. + +
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~-~i~g~pVl--g~-~~l~~~i~~~~id~ViIAip~~~ 200 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTDPAASGR-LLTGLPVV--GA-DDALRLYARTRYAYVIVAMPGTQ 200 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCCcccccc-ccCCCccc--Ch-hHHHHHHHhCCCCEEEEecCCcc
Confidence 46799999998766677777643 267665543332211100 01112111 12 567778888899976652 2 3
Q ss_pred hhhHHHHHHHHHHCCC
Q 010065 157 APLVSGLANKLVKAGI 172 (519)
Q Consensus 157 ~~~~~~~a~~le~~gi 172 (519)
......+.+.++..++
T Consensus 201 ~~~~~~ll~~l~~~~v 216 (456)
T TIGR03022 201 AEDMARLVRKLGALHF 216 (456)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 3334455666777776
No 216
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=62.29 E-value=36 Score=30.31 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=24.9
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
+.++|+|+|+|......++.|.+. |.++.+++|.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~-ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT-GAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCc
Confidence 357899999996555556677665 8888888554
No 217
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=62.28 E-value=36 Score=36.13 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=25.7
Q ss_pred CccEEEEEeCChhHHH-HHHHHHhcCCCcEEEEec
Q 010065 81 QRVVVLVIGGGGREHA-LCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~-l~~~l~~~~g~~~v~~~~ 114 (519)
+.++|+|+|.|+.... +++.|++. |+++...|.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~-G~~V~~~D~ 39 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNL-GYKVSGSDL 39 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhC-CCeEEEECC
Confidence 4578999999977666 68888877 998876654
No 218
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=62.22 E-value=29 Score=34.34 Aligned_cols=97 Identities=20% Similarity=0.176 Sum_probs=50.6
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCcccc-CCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIP-DLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~-~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
|++|.|||.|.........+.+..+++...+...++.......+.... .....+.+.++ ...++|+|+...-...-
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll---~~~dIDaV~iaTp~~~H 77 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLL---ANPDIDIVFDATSAKAH 77 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHh---cCCCCCEEEECCCcHHH
Confidence 468999999854444445555455677766543332211100011110 11223455554 34579999985433333
Q ss_pred HHHHHHHHHCCCCeeCCcHHH
Q 010065 161 SGLANKLVKAGIPTFGPSSEA 181 (519)
Q Consensus 161 ~~~a~~le~~gip~~g~~~~~ 181 (519)
..++..+.+.|.+++-..+..
T Consensus 78 ~e~a~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 78 ARHARLLAELGKIVIDLTPAA 98 (285)
T ss_pred HHHHHHHHHcCCEEEECCccc
Confidence 345666778898886444433
No 219
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=62.11 E-value=79 Score=30.43 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=25.7
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
.+.+|+|+|.|+....+++.|... |+..+.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~-Gvg~i~lv 62 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAA-GVGTLTLV 62 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEE
Confidence 457999999998887889999877 88766553
No 220
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=62.09 E-value=53 Score=32.18 Aligned_cols=111 Identities=17% Similarity=0.119 Sum_probs=56.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhc-CCCcEEEEecCCCCCcCCCCCcccc-CCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 82 RVVVLVIGGGGREHALCYALKRS-HSCDAVFCAPGNAGISNSGDATCIP-DLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~-~g~~~v~~~~~~~~~~~~~~~~~v~-~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
+++|.|+|.|......+..+.+. .+++.+.+...++..... ....+. ..-..+.++++ .++|+|+...-...
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~-~a~~~g~~~~~~~~eell-----~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHAD-FIWGLRRPPPVVPLDQLA-----THADIVVEAAPASV 79 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHH-HHHhcCCCcccCCHHHHh-----cCCCEEEECCCcHH
Confidence 58999999996555566777652 467666443322211100 000110 01123455553 25899998432222
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCC
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIP 201 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~ 201 (519)
...+...+-+.|.+++-.+..+.. +-..+.+.+++.|.+
T Consensus 80 h~e~~~~aL~aGk~Vi~~s~gal~---~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 80 LRAIVEPVLAAGKKAIVLSVGALL---RNEDLIDLARQNGGQ 118 (271)
T ss_pred HHHHHHHHHHcCCcEEEecchhHH---hHHHHHHHHHHcCCE
Confidence 234444444678888743333222 224555666666654
No 221
>PRK08177 short chain dehydrogenase; Provisional
Probab=62.02 E-value=25 Score=32.96 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=41.0
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc---CCCCCccccCCCCCCHHHHHHHHHH---cCCcEEEE
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS---NSGDATCIPDLDVLDGDAVISFCRK---WSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~---~~~~~~~v~~~d~~d~~~l~~~~~~---~~id~Vi~ 153 (519)
++++|+|+. +....+++.|.+. |++++.++.+..... ........ ..|..|.+.+.++.+. .++|.|+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~-~~D~~d~~~~~~~~~~~~~~~id~vi~ 77 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLER-GWQVTATVRGPQQDTALQALPGVHIE-KLDMNDPASLDQLLQRLQGQRFDLLFV 77 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhC-CCEEEEEeCCCcchHHHHhccccceE-EcCCCCHHHHHHHHHHhhcCCCCEEEE
Confidence 578899855 3556678888877 888777754321111 01111112 4577776666555543 46898886
No 222
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=61.97 E-value=34 Score=28.81 Aligned_cols=87 Identities=23% Similarity=0.217 Sum_probs=51.1
Q ss_pred EEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCC--CCCcCCCCC------ccccCCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 84 VVLVIGG-GGREHALCYALKRSHSCDAVFCAPGN--AGISNSGDA------TCIPDLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 84 ~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~--~~~~~~~~~------~~v~~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
||.|+|+ |-....+.+.|.+...++.+.+.... .+....... ..+ .+...+.+.+ .+.|+||..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDL-SVEDADPEEL------SDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEE-BEEETSGHHH------TTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccce-eEeecchhHh------hcCCEEEec
Confidence 6899994 43456788999888888877765432 222111000 111 1111223333 578999997
Q ss_pred CChhhHHHHHHHHHHCCCCeeCC
Q 010065 155 PEAPLVSGLANKLVKAGIPTFGP 177 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~g~ 177 (519)
..+.....++..+.+.|++++-.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~ 96 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDL 96 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEES
T ss_pred CchhHHHHHHHHHhhCCcEEEeC
Confidence 66655556777778889988743
No 223
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=61.80 E-value=88 Score=32.48 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=25.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+.+|+|+|.|+....++..|... |+..+.+.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~-Gvg~i~lv 72 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAA-GVGTLGIV 72 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 46899999999888889999877 88766553
No 224
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.75 E-value=48 Score=31.89 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=36.6
Q ss_pred EEEEE-eCChhHHHHHHHHHhcCCCcEEEEecC---CCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 84 VVLVI-GGGGREHALCYALKRSHSCDAVFCAPG---NAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 84 ~vlii-G~g~~~~~l~~~l~~~~g~~~v~~~~~---~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|+.+| |.|...+.++....+. |+..+.+.-. ++. +.. .+ +..+...+.-.+.++.+.+++|-|+.
T Consensus 6 klglIaG~G~LP~~va~~a~~~-G~~~~ii~l~~eaD~~-~~~--~e-~~~~~iG~vg~lik~l~~~~v~~vVl 74 (279)
T COG3494 6 KLGLIAGNGSLPLEVAENARNQ-GYAPFIIGLRGEADPE-LKE--FE-YKEVSIGEVGKLIKLLKTEGVDRVVL 74 (279)
T ss_pred eEEEEecCCcCcHHHHHHHHhC-CCCcEEEEecCccchh-hhc--CC-CeEEeHHHHHHHHHHHHHcCCcEEEE
Confidence 34444 4555566677777666 7777665311 211 111 11 11234456778888888888887665
No 225
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=61.63 E-value=4.3 Score=37.61 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=17.8
Q ss_pred CCceeccCCceeEEeccCCC
Q 010065 33 NNLRFSVGPNFSISFNPQGS 52 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ 52 (519)
++++|...|.|++||||+..
T Consensus 158 ~~~~~~~~pi~gvQfHPE~~ 177 (193)
T PRK08857 158 MGFQHKTLPIEAVQFHPESI 177 (193)
T ss_pred EEEEeCCCCEEEEeeCCCcC
Confidence 57789999999999999975
No 226
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.35 E-value=61 Score=34.17 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.0
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
+.++|+|+|+|.....+++.|.+. |+++++++.+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~ 37 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL-GAKVILTDEK 37 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 357899999998777889999887 9998887654
No 227
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=61.26 E-value=38 Score=27.22 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=45.5
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
++.++.|+|.|....+++....+..|+....+.+.++..... ....++.. ...+++.+.+ ++|..+..--....
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~-~i~gipV~--~~~~~l~~~~---~i~iaii~VP~~~a 75 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK-EIGGIPVY--GSMDELEEFI---EIDIAIITVPAEAA 75 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS-EETTEEEE--SSHHHHHHHC---TTSEEEEES-HHHH
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc-EECCEEee--ccHHHhhhhh---CCCEEEEEcCHHHH
Confidence 457899999998765555545444577765554333321110 00111111 1456666655 37766653222223
Q ss_pred HHHHHHHHHCCCCe
Q 010065 161 SGLANKLVKAGIPT 174 (519)
Q Consensus 161 ~~~a~~le~~gip~ 174 (519)
+..++.+-+.|++-
T Consensus 76 ~~~~~~~~~~gIk~ 89 (96)
T PF02629_consen 76 QEVADELVEAGIKG 89 (96)
T ss_dssp HHHHHHHHHTT-SE
T ss_pred HHHHHHHHHcCCCE
Confidence 45566666788874
No 228
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=61.16 E-value=31 Score=34.88 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=65.3
Q ss_pred ccEEEEEeCChh-HHHHHHHHHhcCCCcEEEEecCC-CCCcCCCCCcccc-----CCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 82 RVVVLVIGGGGR-EHALCYALKRSHSCDAVFCAPGN-AGISNSGDATCIP-----DLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 82 ~~~vliiG~g~~-~~~l~~~l~~~~g~~~v~~~~~~-~~~~~~~~~~~v~-----~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
++||.|+|+.|. ..++.+.|.+...+++..+.... .+........+.. .+...|.+.+ ...++|+||..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~----~~~~~DvvFla 77 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI----ELDECDVVFLA 77 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh----hcccCCEEEEe
Confidence 679999997764 36788999888888866655432 2221111111110 1222233332 23458999986
Q ss_pred CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 010065 155 PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~ 204 (519)
.-++.-..++..+...|.+++ |..+.....|+..-.++. |.+.+.
T Consensus 78 lPhg~s~~~v~~l~~~g~~VI--DLSadfR~~d~~~ye~~Y---g~~h~~ 122 (349)
T COG0002 78 LPHGVSAELVPELLEAGCKVI--DLSADFRLKDPEVYEKWY---GFTHAG 122 (349)
T ss_pred cCchhHHHHHHHHHhCCCeEE--ECCcccccCCHHHHHHhh---CCCCCC
Confidence 544444456666777788876 555666677776654443 444443
No 229
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=60.61 E-value=16 Score=40.42 Aligned_cols=112 Identities=9% Similarity=-0.024 Sum_probs=61.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNS--GDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAP 158 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~ 158 (519)
+.+|+|+|.|...+.+++.|.+. |++++.++.+....... .....+ +-|..+.+-+ +.+.-.+.|.++.. +++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~g~~v~-~GDat~~~~L-~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-KMRITVLERDISAVNLMRKYGYKVY-YGDATQLELL-RAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhCCCeEE-EeeCCCHHHH-HhcCCccCCEEEEEeCCHH
Confidence 46899999997777788888876 89998887542111111 111222 5577765544 33444567777763 3333
Q ss_pred hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCC
Q 010065 159 LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT 202 (519)
Q Consensus 159 ~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~ 202 (519)
....+.....++. |+...+..++|.... +.|++.|...
T Consensus 477 ~n~~i~~~~r~~~-----p~~~IiaRa~~~~~~-~~L~~~Ga~~ 514 (601)
T PRK03659 477 DTMKIVELCQQHF-----PHLHILARARGRVEA-HELLQAGVTQ 514 (601)
T ss_pred HHHHHHHHHHHHC-----CCCeEEEEeCCHHHH-HHHHhCCCCE
Confidence 3223333333332 122223455665544 4466677764
No 230
>PRK08264 short chain dehydrogenase; Validated
Probab=60.43 E-value=34 Score=32.16 Aligned_cols=70 Identities=23% Similarity=0.239 Sum_probs=43.1
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCC-cEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHc-CCcEEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSC-DAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKW-SVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~-~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~-~id~Vi~ 153 (519)
.++++|+|++ +....++..|.+. |+ +++.+..+....... .....+ ..|..+.+.+.++.+.. ++|+|+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~-G~~~V~~~~r~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~id~vi~ 79 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLAR-GAAKVYAAARDPESVTDLGPRVVPL-QLDVTDPASVAAAAEAASDVTILVN 79 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CcccEEEEecChhhhhhcCCceEEE-EecCCCHHHHHHHHHhcCCCCEEEE
Confidence 4689999965 4556788888877 88 666554331111101 111222 56888888877777654 4888886
No 231
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=60.42 E-value=21 Score=37.57 Aligned_cols=88 Identities=18% Similarity=0.061 Sum_probs=55.8
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcC----C-CCCccccCCCCCCHHHHHHHHHHcCCcEEEECC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISN----S-GDATCIPDLDVLDGDAVISFCRKWSVGLVVVGP 155 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~-~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~ 155 (519)
..+++.|.|.+.....+++.|.++.|.+++.+......... . .........+..|...+.+.+++.++|.++.+.
T Consensus 289 ~Gkrvai~g~~~~~~~la~~L~eelGm~~v~v~t~~~~~~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 289 RGKRVFFLPDSQLEIPLARFLSRECGMELVEVGTPYLNRRFLAAELALLPDGVRIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred CCcEEEEECCchhHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHhccCCCEEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 45789999887777788999887569998877532211100 0 000111123556788888999999999999765
Q ss_pred ChhhHHHHHHHHHHCCCCe
Q 010065 156 EAPLVSGLANKLVKAGIPT 174 (519)
Q Consensus 156 E~~~~~~~a~~le~~gip~ 174 (519)
.... -+.+.|+|+
T Consensus 369 ~~~~------pl~r~GfP~ 381 (427)
T PRK02842 369 GLAN------PLEAEGITT 381 (427)
T ss_pred ccCC------chhhcCCce
Confidence 3221 255677776
No 232
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=60.24 E-value=66 Score=33.14 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=24.9
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEE
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFC 112 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~ 112 (519)
.+.+|+|+|.|+....+++.|... |+..+.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~-Gvg~i~i 70 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASA-GVGTITL 70 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEE
Confidence 356899999999888889999877 8865554
No 233
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=60.19 E-value=42 Score=32.27 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=42.3
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHH-----cCCcEEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRK-----WSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~-----~~id~Vi~ 153 (519)
.++++|+|++ +....++..|.+. |.+++.++.+...... .....+ ..|..|.+.+.++.+. .++|+++.
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~-G~~v~~~~~~~~~~~~-~~~~~~-~~D~~~~~~~~~~~~~~~~~~g~id~li~ 83 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLAN-GANVVNADIHGGDGQH-ENYQFV-PTDVSSAEEVNHTVAEIIEKFGRIDGLVN 83 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCcccccc-CceEEE-EccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4688999865 4556678888777 8888877543211110 111222 5677777666665544 25888886
No 234
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=59.95 E-value=35 Score=34.63 Aligned_cols=70 Identities=16% Similarity=0.046 Sum_probs=43.2
Q ss_pred CCccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC-C------------CCCccccCCCCCCHHHHHHHHHH
Q 010065 80 GQRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN-S------------GDATCIPDLDVLDGDAVISFCRK 145 (519)
Q Consensus 80 ~~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-~------------~~~~~v~~~d~~d~~~l~~~~~~ 145 (519)
..+++|+|+|+.| ....++..|.+. |++++.++....+... . .....+ ..|..|.+.+.++++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Di~d~~~l~~~~~- 89 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFL-NQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFI-QGDIRKFTDCQKACK- 89 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCCCcchhhhhhhhhccccccCCceEEE-EccCCCHHHHHHHhh-
Confidence 3458999999854 455688888877 8888777532211100 0 001112 457777777776665
Q ss_pred cCCcEEEE
Q 010065 146 WSVGLVVV 153 (519)
Q Consensus 146 ~~id~Vi~ 153 (519)
++|.||-
T Consensus 90 -~~d~ViH 96 (348)
T PRK15181 90 -NVDYVLH 96 (348)
T ss_pred -CCCEEEE
Confidence 5898886
No 235
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=59.54 E-value=1.6e+02 Score=27.91 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHcCCcEEEE---CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCC--CCeeec
Q 010065 134 LDGDAVISFCRKWSVGLVVV---GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT--AKYKTF 208 (519)
Q Consensus 134 ~d~~~l~~~~~~~~id~Vi~---g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~--p~~~~v 208 (519)
.+.+.+...++..++..+.. +.....+..+.+.+...|+-.+ -.-++.....|.+..+.++++|+.. |-| -
T Consensus 45 ~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~v--v~GdI~s~~qr~~~e~vc~~~gl~~~~PLW-~- 120 (222)
T TIGR00289 45 PNLHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEAL--CIGAIESNYQKSRIDKVCRELGLKSIAPLW-H- 120 (222)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEE--EECccccHHHHHHHHHHHHHcCCEEecccc-C-
Confidence 34566667777778765433 3233345566777777787632 1123334446888889999999965 333 2
Q ss_pred CCHHHHHHHHHHhCCCEEEEeCCC
Q 010065 209 TDPNAAKQYIQEEGAPIVVKADGL 232 (519)
Q Consensus 209 ~~~~~~~~~~~~~g~P~VvKP~~g 232 (519)
.+.+++.+++ +.||-.++.-++.
T Consensus 121 ~d~~~l~e~i-~~Gf~aiIv~v~~ 143 (222)
T TIGR00289 121 ADPEKLMYEV-AEKFEVIIVSVSA 143 (222)
T ss_pred CCHHHHHHHH-HcCCeEEEEEEcc
Confidence 3445666665 5788877766543
No 236
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=59.50 E-value=18 Score=31.28 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=26.2
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+.++++|+|+|+....++..|.+. |+..+.+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~ 42 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIV 42 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEE
Confidence 357999999999888889999887 88866553
No 237
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=59.33 E-value=19 Score=34.66 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=40.5
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC-------CCCCccccCCCCCCHHHHHHHHHH-----cCCc
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN-------SGDATCIPDLDVLDGDAVISFCRK-----WSVG 149 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-------~~~~~~v~~~d~~d~~~l~~~~~~-----~~id 149 (519)
|+++|+|++ +...++++.+.+. |+.+++++.+...... ......+ ..|..|.+.+.++.++ .++|
T Consensus 1 m~vlItGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK-GARVVISSRNEENLEKALKELKEYGEVYAV-KADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCceEE-EcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 579999976 4556788888877 8887766533111000 0011112 4677776666555543 2588
Q ss_pred EEEE
Q 010065 150 LVVV 153 (519)
Q Consensus 150 ~Vi~ 153 (519)
.++.
T Consensus 79 ~li~ 82 (259)
T PRK08340 79 ALVW 82 (259)
T ss_pred EEEE
Confidence 8876
No 238
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=58.86 E-value=65 Score=30.95 Aligned_cols=29 Identities=31% Similarity=0.259 Sum_probs=22.0
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEE
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFC 112 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~ 112 (519)
-+|.|+|.||...-.+.+|.++ |+..+.+
T Consensus 31 ~~V~VvGiGGVGSw~veALaRs-Gig~itl 59 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARS-GIGRITL 59 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHc-CCCeEEE
Confidence 4799999998665568888888 7766554
No 239
>PRK04148 hypothetical protein; Provisional
Probab=58.81 E-value=40 Score=29.26 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=23.3
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
.++++.+|.| ....++..|.+. |++++.+|-+
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES-GFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC-CCEEEEEECC
Confidence 3689999988 333467777766 8888888743
No 240
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=58.70 E-value=69 Score=34.66 Aligned_cols=91 Identities=18% Similarity=0.318 Sum_probs=56.3
Q ss_pred CCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE---CCC
Q 010065 80 GQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV---GPE 156 (519)
Q Consensus 80 ~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~---g~E 156 (519)
.+..+++|+|+|.....+++++++...+..+.+-++++..... ...-++... ..+ +.+++++.+++-++. .-+
T Consensus 114 ~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~-~i~Gv~V~g--~~~-i~~~v~~~~~~~iiiAips~~ 189 (588)
T COG1086 114 DNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGM-KIRGVPVLG--RIE-IERVVEELGIQLILIAIPSAS 189 (588)
T ss_pred cCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCC-EEeceeeec--hhH-HHHHHHHcCCceEEEecCCCC
Confidence 3457899999998777788888887666666554443322111 001111111 123 778888888886654 445
Q ss_pred hhhHHHHHHHHHHCCCCe
Q 010065 157 APLVSGLANKLVKAGIPT 174 (519)
Q Consensus 157 ~~~~~~~a~~le~~gip~ 174 (519)
....+.+.+.+.+.|+.+
T Consensus 190 ~~~~~~i~~~l~~~~~~v 207 (588)
T COG1086 190 QEERRRILLRLARTGIAV 207 (588)
T ss_pred HHHHHHHHHHHHhcCCcE
Confidence 555667777788888765
No 241
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=58.69 E-value=37 Score=34.25 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=42.4
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEE-EecCC-CCC-cCC------CCCccccCCCCCCHHHHHHHHHHcCCcEEE
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVF-CAPGN-AGI-SNS------GDATCIPDLDVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~-~~~~~-~~~-~~~------~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi 152 (519)
|||+|+|+.| ....+++.|.+. |.+.+. ++... .+. ... .....+ ..|..|.+.+.+++++.++|.||
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d~vi 78 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVDKLTYAGNLESLADVSDSERYVFE-HADICDRAELDRIFAQHQPDAVM 78 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEecCCCccchHHHHHhcccCCceEEE-EecCCCHHHHHHHHHhcCCCEEE
Confidence 5799999754 456688888876 766443 32111 000 000 011122 56888888888888777899998
Q ss_pred E
Q 010065 153 V 153 (519)
Q Consensus 153 ~ 153 (519)
-
T Consensus 79 h 79 (352)
T PRK10084 79 H 79 (352)
T ss_pred E
Confidence 7
No 242
>PRK03202 6-phosphofructokinase; Provisional
Probab=58.36 E-value=61 Score=32.67 Aligned_cols=41 Identities=29% Similarity=0.504 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHcCCcEEEE-CCChhhHHHHHHHHHHCCCCeeCC
Q 010065 135 DGDAVISFCRKWSVGLVVV-GPEAPLVSGLANKLVKAGIPTFGP 177 (519)
Q Consensus 135 d~~~l~~~~~~~~id~Vi~-g~E~~~~~~~a~~le~~gip~~g~ 177 (519)
+.+.+.+.++++++|+++. |+++.+ .. +..|.+.++|++|-
T Consensus 81 ~~~~~~~~l~~~~Id~Li~IGGd~s~-~~-a~~L~e~~i~vigi 122 (320)
T PRK03202 81 GRAKAIENLKKLGIDALVVIGGDGSY-MG-AKRLTEHGIPVIGL 122 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHH-HH-HHHHHhcCCcEEEe
Confidence 3678888889999998887 666554 23 44566678888863
No 243
>PRK05865 hypothetical protein; Provisional
Probab=58.28 E-value=1e+02 Score=35.48 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=62.9
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CCh---
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEA--- 157 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~--- 157 (519)
|+|+|+|+. .....++..|.+. |++++.++....... ......+ ..|..|.+.+.+.++ ++|.||.. +..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~-G~~Vv~l~R~~~~~~-~~~v~~v-~gDL~D~~~l~~al~--~vD~VVHlAa~~~~~ 75 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQ-GHEVVGIARHRPDSW-PSSADFI-AADIRDATAVESAMT--GADVVAHCAWVRGRN 75 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCchhhc-ccCceEE-EeeCCCHHHHHHHHh--CCCEEEECCCcccch
Confidence 579999975 4456678888776 888877754321111 0111223 467778777776665 58988872 110
Q ss_pred --h-h--HHHHHHHHHHCCCC-eeCCcHHHHHHhcCHHHHHHHHHHcCCCC
Q 010065 158 --P-L--VSGLANKLVKAGIP-TFGPSSEAAALEGSKNFMKNLCDKYGIPT 202 (519)
Q Consensus 158 --~-~--~~~~a~~le~~gip-~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~ 202 (519)
. . ...+.+.+.+.|++ ++-.+... |...-+++.+.|++.
T Consensus 76 ~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------K~aaE~ll~~~gl~~ 120 (854)
T PRK05865 76 DHINIDGTANVLKAMAETGTGRIVFTSSGH------QPRVEQMLADCGLEW 120 (854)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCcH------HHHHHHHHHHcCCCE
Confidence 0 0 12344555666753 32222211 777777888888766
No 244
>PRK06182 short chain dehydrogenase; Validated
Probab=58.26 E-value=19 Score=34.93 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=42.7
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCCccccCCCCCCHHHHHHHHHH-----cCCcEEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS--GDATCIPDLDVLDGDAVISFCRK-----WSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~~~v~~~d~~d~~~l~~~~~~-----~~id~Vi~ 153 (519)
.++++|+|++ +....+++.|.+. |++++.+..+....... .....+ ..|..|.+.+.+++++ .++|.++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~-G~~V~~~~r~~~~l~~~~~~~~~~~-~~Dv~~~~~~~~~~~~~~~~~~~id~li~ 80 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ-GYTVYGAARRVDKMEDLASLGVHPL-SLDVTDEASIKAAVDTIIAEEGRIDVLVN 80 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhCCCeEE-EeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4689999965 4556788888876 88887765432111000 011222 4677777776665553 26899887
No 245
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=58.14 E-value=8.6 Score=39.01 Aligned_cols=52 Identities=25% Similarity=0.168 Sum_probs=29.5
Q ss_pred EEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhhcc---CCCCCCcEEEEeccCCc
Q 010065 225 IVVKADGLAAGKGVIVAMTLEEAYEAVDSMLLKNA---FGSAGCRVIIEEFLEGE 276 (519)
Q Consensus 225 ~VvKP~~g~gs~GV~~v~~~~el~~a~~~~~~~~~---~~~~~~~~lvEe~I~G~ 276 (519)
+|||...|.-|.||..|++.+|+...=++.+.... -+..-..+||||=|.-.
T Consensus 263 V~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~ 317 (404)
T PF08886_consen 263 VFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTF 317 (404)
T ss_dssp EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchh
Confidence 78999999999999999999998654444332111 11223689999988753
No 246
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=57.98 E-value=1.1e+02 Score=32.80 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=47.9
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcC--CCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE-C-CCh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSH--SCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV-G-PEA 157 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~--g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~-g-~E~ 157 (519)
.++++|+|+|+....++..+.++. |++++.+-++++.... ...++.+ .+.+.+...+++..+|.++. + .+.
T Consensus 146 ~rrvLIIGaG~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~~---i~gvPVl--g~~d~l~~~~~~~~v~vIIAip~~~~ 220 (476)
T PRK15204 146 KKKTIILGSGQNARGAYSALQSEEMMGFDVIAFFDTDASDAE---INMLPVI--KDTEIIWDLNRTGDVHYILAYEYTEL 220 (476)
T ss_pred CCeEEEEECCHHHHHHHHHHHhCccCCcEEEEEEcCCccccc---cCCCccc--CCHHHHHHHHHhCCCcEEEEeCcCcH
Confidence 467999999987666777776542 7766654333322111 1112111 22345556666777776665 2 222
Q ss_pred hhHHHHHHHHHHCCCC
Q 010065 158 PLVSGLANKLVKAGIP 173 (519)
Q Consensus 158 ~~~~~~a~~le~~gip 173 (519)
.....+.+.++..|++
T Consensus 221 ~~r~~il~~l~~~gv~ 236 (476)
T PRK15204 221 EKTHFWLRELSKHHCR 236 (476)
T ss_pred HHHHHHHHHHhhcCCe
Confidence 3333556667777764
No 247
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=57.93 E-value=22 Score=39.44 Aligned_cols=113 Identities=11% Similarity=0.010 Sum_probs=61.7
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCc--CCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGIS--NSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAP 158 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~--~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~ 158 (519)
..+|+|+|.|...+.+++.|.+. |++++.++.+..... .......+ +-|..+.+-+ +.+.-.+.|.++.. .++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~g~~v~-~GDat~~~~L-~~agi~~A~~vvv~~~d~~ 476 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRKFGMKVF-YGDATRMDLL-ESAGAAKAEVLINAIDDPQ 476 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhcCCeEE-EEeCCCHHHH-HhcCCCcCCEEEEEeCCHH
Confidence 46899999997777788888876 898888865421111 11112223 5677776544 33444467777763 3333
Q ss_pred hHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCC
Q 010065 159 LVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTA 203 (519)
Q Consensus 159 ~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p 203 (519)
....+.....++. |+......++|.... ..|++.|....
T Consensus 477 ~n~~i~~~ar~~~-----p~~~iiaRa~d~~~~-~~L~~~Gad~v 515 (621)
T PRK03562 477 TSLQLVELVKEHF-----PHLQIIARARDVDHY-IRLRQAGVEKP 515 (621)
T ss_pred HHHHHHHHHHHhC-----CCCeEEEEECCHHHH-HHHHHCCCCEE
Confidence 3333333344331 111223345565443 44566676644
No 248
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.56 E-value=15 Score=34.95 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=43.1
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC----C---CCCccccCCCCCCHHHHHHHHHHc-----CC
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN----S---GDATCIPDLDVLDGDAVISFCRKW-----SV 148 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~---~~~~~v~~~d~~d~~~l~~~~~~~-----~i 148 (519)
.++++|+|+++ ....+++.|.+. |++++.++.+...... . .....+ ..|..|.+.+..++++. ++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAE-GARVVVTDRNEEAAERVAAEILAGGRAIAV-AADVSDEADVEAAVAAALERFGSV 82 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhcCCeEEEE-ECCCCCHHHHHHHHHHHHHHhCCC
Confidence 46899999763 556788888877 8887766533211100 0 001122 56778877776665543 68
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|+|+.
T Consensus 83 d~vi~ 87 (251)
T PRK07231 83 DILVN 87 (251)
T ss_pred CEEEE
Confidence 99887
No 249
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=57.14 E-value=30 Score=36.19 Aligned_cols=87 Identities=20% Similarity=0.103 Sum_probs=55.5
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcC---C--CCCccccCCCCCCHHHHHHHHHHcCCcEEEECC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISN---S--GDATCIPDLDVLDGDAVISFCRKWSVGLVVVGP 155 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~---~--~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~ 155 (519)
..+++.|.|.+.....+++.|.+ .|.+++.+......... . .........+..|...+.+.+++.++|.++.+.
T Consensus 273 ~Gkrv~i~gd~~~~~~l~~~L~e-lGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~i~~~~pDllig~~ 351 (407)
T TIGR01279 273 RGKKIFFFGDNLLELPLARFLKR-CGMEVVECGTPYIHRRFHAAELALLEGGVRIVEQPDFHRQLQRIRATRPDLVVTGL 351 (407)
T ss_pred CCCEEEEECCchHHHHHHHHHHH-CCCEEEEecCCCCChHHHHHHHhhcCCCCeEEeCCCHHHHHHHHHhcCCCEEecCc
Confidence 45789999988777778888887 59988876432211100 0 000011134556788888999999999999866
Q ss_pred ChhhHHHHHHHHHHCCCCe
Q 010065 156 EAPLVSGLANKLVKAGIPT 174 (519)
Q Consensus 156 E~~~~~~~a~~le~~gip~ 174 (519)
.... -|.+.|+|+
T Consensus 352 ~~~~------pl~r~GfP~ 364 (407)
T TIGR01279 352 GTAN------PLEAQGFTT 364 (407)
T ss_pred cCCC------cHhhCCcce
Confidence 3322 155677776
No 250
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=56.93 E-value=8.9 Score=38.56 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=64.5
Q ss_pred ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCCC
Q 010065 156 EAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAAG 235 (519)
Q Consensus 156 E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~gs 235 (519)
|+...+.++..++..+..++ .|.=-.+..||..+.-+.+.. |.-|..+-+..+.... .+.+--.|.||..|.-|
T Consensus 236 E~m~~e~~~~~l~~~~~~~l--EPaWk~ilsNK~lLplLW~~f--PnHp~LL~t~F~~~~~--~~~~~~yv~KPl~gREG 309 (387)
T COG0754 236 EDMLREELAQNLENARTIFL--EPAWKSILSNKALLPLLWERF--PNHPNLLPTYFEPDDE--EKLGESYVRKPLFGREG 309 (387)
T ss_pred HHHHHHHHHHHhcCCCcEEe--chhHHHHhccccHHHHHHHhC--CCCcccccccCCCCcc--ccchhhhhccccccccC
Confidence 44444445666777777776 344445789999998888774 4433333222221111 12233489999999999
Q ss_pred CcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccC
Q 010065 236 KGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLE 274 (519)
Q Consensus 236 ~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~ 274 (519)
.+|.++.+........ ...| .+..+|.|+|.+
T Consensus 310 aNv~i~~~~~~~~~~~-----~G~Y--g~eg~IyQe~~~ 341 (387)
T COG0754 310 ANVSIFEDAGKVLDKA-----DGPY--GEEGMIYQEFYP 341 (387)
T ss_pred CCeeEEecCCceeecC-----CCCc--cccchhhhhhcc
Confidence 9999997643322211 1123 247899999997
No 251
>CHL00194 ycf39 Ycf39; Provisional
Probab=56.76 E-value=27 Score=34.92 Aligned_cols=67 Identities=13% Similarity=0.039 Sum_probs=41.2
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNS--GDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|+|+|+|+.| ....++..|.+. |++++.+..+....... ...+.+ ..|..|.+.+.+.++ ++|+|+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~-g~~V~~l~R~~~~~~~l~~~~v~~v-~~Dl~d~~~l~~al~--g~d~Vi~ 70 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE-GYQVRCLVRNLRKASFLKEWGAELV-YGDLSLPETLPPSFK--GVTAIID 70 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCeEEEEEcChHHhhhHhhcCCEEE-ECCCCCHHHHHHHHC--CCCEEEE
Confidence 5899999765 445678888876 88877665331111100 112223 457777777766554 5788886
No 252
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=56.73 E-value=46 Score=32.17 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=26.6
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
.+.+++|+|+|.-..+++..++.. |++++++++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~l-Gf~V~v~D~R 132 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPL-PCRVTWVDSR 132 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcC-CCEEEEEeCC
Confidence 457999999997666777766554 9999998755
No 253
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.60 E-value=91 Score=33.08 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=25.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
.++|+|+|.|....++++.|++. |+++...+.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~-G~~V~~~D~ 45 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKL-GAKVTAFDK 45 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHC-CCEEEEECC
Confidence 46899999997667788888877 888776653
No 254
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=56.56 E-value=1.1e+02 Score=29.78 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=49.0
Q ss_pred EEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHH----cC-CcEEEE-CC-
Q 010065 84 VVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRK----WS-VGLVVV-GP- 155 (519)
Q Consensus 84 ~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~----~~-id~Vi~-g~- 155 (519)
+|+|+|+.| ....++..|.+. |+++..+..+..... ......+ ..|..|.+.+.+..+. .. +|.++. .+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R~~~~~~-~~~~~~~-~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLVASRSSSSSA-GPNEKHV-KFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEEEeCCCcccc-CCCCccc-cccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 489999854 445677888776 888877654321111 1112223 5677888887776642 34 788875 21
Q ss_pred --C-hhhHHHHHHHHHHCCCC
Q 010065 156 --E-APLVSGLANKLVKAGIP 173 (519)
Q Consensus 156 --E-~~~~~~~a~~le~~gip 173 (519)
+ ......+.+.+.+.|++
T Consensus 78 ~~~~~~~~~~~i~aa~~~gv~ 98 (285)
T TIGR03649 78 IPDLAPPMIKFIDFARSKGVR 98 (285)
T ss_pred CCChhHHHHHHHHHHHHcCCC
Confidence 1 11122344555666765
No 255
>PRK08328 hypothetical protein; Provisional
Probab=56.49 E-value=1.3e+02 Score=28.56 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=25.6
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+.+|+|+|.|+...+++..|.+. |+..+.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lv 57 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLI 57 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEE
Confidence 46899999999888889999877 88776654
No 256
>PRK08267 short chain dehydrogenase; Provisional
Probab=56.20 E-value=21 Score=34.19 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=41.3
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC----C--CCCccccCCCCCCHHHHHHHHHH------cCCc
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN----S--GDATCIPDLDVLDGDAVISFCRK------WSVG 149 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~--~~~~~v~~~d~~d~~~l~~~~~~------~~id 149 (519)
++++|+|+++ ....++..|.+. |++++.++.+...... . .....+ ..|..+.+.+.+..+. .++|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE-GWRVGAYDINEAGLAALAAELGAGNAWTG-ALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcCCceEEE-EecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 5799999663 456778888877 8888777543211100 0 011222 5677776666655442 2689
Q ss_pred EEEE
Q 010065 150 LVVV 153 (519)
Q Consensus 150 ~Vi~ 153 (519)
.|+.
T Consensus 80 ~vi~ 83 (260)
T PRK08267 80 VLFN 83 (260)
T ss_pred EEEE
Confidence 8887
No 257
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=56.19 E-value=44 Score=31.68 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=43.1
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHH-----cCCcEEEE
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRK-----WSVGLVVV 153 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~-----~~id~Vi~ 153 (519)
+.++++|+|+++ ....++..+.+. |++++.++.+... ........+ ..|..+.+.+.+++++ .++|.++.
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~-G~~v~~~~~~~~~-~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 82 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEA-GAKVIGFDQAFLT-QEDYPFATF-VLDVSDAAAVAQVCQRLLAETGPLDVLVN 82 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecchhh-hcCCceEEE-EecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 347899999763 456678888776 8888777543200 001111223 5677777766666554 35898887
No 258
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=55.71 E-value=1.1e+02 Score=29.44 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=36.8
Q ss_pred CHHHHHHHHHH---cCCcEEEECC-ChhhHHHHHHHHH-HCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCC
Q 010065 135 DGDAVISFCRK---WSVGLVVVGP-EAPLVSGLANKLV-KAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTA 203 (519)
Q Consensus 135 d~~~l~~~~~~---~~id~Vi~g~-E~~~~~~~a~~le-~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p 203 (519)
+++.+.+.+++ .++|+||..+ .-..+ .+.+.+| ++|+|++ .+..+ .+...|+..|++.+
T Consensus 166 ~p~~i~~~~~~~~~~~aDAifisCTnLrt~-~vi~~lE~~lGkPVl-sSNqa--------t~W~~Lr~~G~~~~ 229 (239)
T TIGR02990 166 SPDCIVEAALAAFDPDADALFLSCTALRAA-TCAQRIEQAIGKPVV-TSNQA--------TAWRCLRLCGDPDM 229 (239)
T ss_pred CHHHHHHHHHHhcCCCCCEEEEeCCCchhH-HHHHHHHHHHCCCEE-EHHHH--------HHHHHHHHcCCCCC
Confidence 46677777764 4689999843 33333 4455565 6899998 33333 34466788887753
No 259
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.67 E-value=73 Score=33.96 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=26.3
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
..++|+|+|+|.....++..|++. |+++.+++..
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~ 48 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLEL-GARVTVVDDG 48 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 356899999997777778888876 8988777533
No 260
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=55.28 E-value=32 Score=22.49 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHHHHHH
Q 010065 188 KNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQ 219 (519)
Q Consensus 188 K~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~ 219 (519)
...++..|.++||++|+.. .+.+++.+.+.
T Consensus 6 ~~~L~~wL~~~gi~~~~~~--~~rd~Ll~~~k 35 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVPKSA--KTRDELLKLAK 35 (38)
T ss_pred HHHHHHHHHHcCCCCCCCC--CCHHHHHHHHH
Confidence 4567888999999998866 56777766554
No 261
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=55.19 E-value=34 Score=34.54 Aligned_cols=141 Identities=14% Similarity=0.182 Sum_probs=76.1
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCC-C---CccccCCCCCCHHHHHHHHHHcCC------cE
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSG-D---ATCIPDLDVLDGDAVISFCRKWSV------GL 150 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~-~---~~~v~~~d~~d~~~l~~~~~~~~i------d~ 150 (519)
+..+|.+||+|.....++-......|.+++.+..-+......+ + .+....++.++.....+.++..++ +.
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~ 95 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAEL 95 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhh
Confidence 3579999999965444555555556999988865443321110 0 011101233344445554544332 11
Q ss_pred EEECCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHH--------------HHHHHHHHcCCCCCCe--eecCCHHHH
Q 010065 151 VVVGPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKN--------------FMKNLCDKYGIPTAKY--KTFTDPNAA 214 (519)
Q Consensus 151 Vi~g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~--------------~~k~~l~~~Gi~~p~~--~~v~~~~~~ 214 (519)
|+..++-. .+ .+..|+|-+|.....-++...|. .+|+...+.|+-..-. -.-...-++
T Consensus 96 i~~~~~Id---vI---IdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~mEL 169 (438)
T COG4091 96 IIANDLID---VI---IDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEPSSCMEL 169 (438)
T ss_pred hhcCCcce---EE---EEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCcHHHHHH
Confidence 11111111 11 34567777766666666666664 5788888888742111 011123478
Q ss_pred HHHHHHhCCCEEE
Q 010065 215 KQYIQEEGAPIVV 227 (519)
Q Consensus 215 ~~~~~~~g~P~Vv 227 (519)
.+|+..+||++|.
T Consensus 170 ~efa~a~G~evv~ 182 (438)
T COG4091 170 YEFASALGFEVVS 182 (438)
T ss_pred HHHHHhcCCeEEe
Confidence 8999999999886
No 262
>PRK10537 voltage-gated potassium channel; Provisional
Probab=54.92 E-value=49 Score=34.37 Aligned_cols=111 Identities=8% Similarity=-0.039 Sum_probs=60.2
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChhhH
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAPLV 160 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~~~ 160 (519)
+.+++|+|.|.....+++.|++. |+++++++++............+ ..|+.|.+.+.+ +.-.+.++++.. .+|...
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~-g~~vvVId~d~~~~~~~~g~~vI-~GD~td~e~L~~-AgI~~A~aVI~~t~dD~~N 316 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQR-GQAVTVIVPLGLEHRLPDDADLI-PGDSSDSAVLKK-AGAARARAILALRDNDADN 316 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHC-CCCEEEEECchhhhhccCCCcEE-EeCCCCHHHHHh-cCcccCCEEEEcCCChHHH
Confidence 56899999997777788888766 88888887542111111112233 567777655543 333466778773 444432
Q ss_pred HHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCC
Q 010065 161 SGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIP 201 (519)
Q Consensus 161 ~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~ 201 (519)
..++...++++ | +...+..+.|... .+.+++.|..
T Consensus 317 l~ivL~ar~l~-p----~~kIIa~v~~~~~-~~~L~~~GaD 351 (393)
T PRK10537 317 AFVVLAAKEMS-S----DVKTVAAVNDSKN-LEKIKRVHPD 351 (393)
T ss_pred HHHHHHHHHhC-C----CCcEEEEECCHHH-HHHHHhcCCC
Confidence 22333334433 1 1122233444433 4556777754
No 263
>PRK05693 short chain dehydrogenase; Provisional
Probab=54.73 E-value=23 Score=34.41 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=40.9
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCCccccCCCCCCHHHHHHHHHHc-----CCcEEEE
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS--GDATCIPDLDVLDGDAVISFCRKW-----SVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~~~v~~~d~~d~~~l~~~~~~~-----~id~Vi~ 153 (519)
++++|+|++ +....+++.+.+. |++++.++.+....... .....+ ..|..+.+.+.++++.. ++|.++.
T Consensus 2 k~vlItGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~id~vi~ 78 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAA-GYEVWATARKAEDVEALAAAGFTAV-QLDVNDGAALARLAEELEAEHGGLDVLIN 78 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHCCCeEE-EeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 578899865 4556778888776 88877765331111000 011222 46777766666555432 6899987
No 264
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=54.38 E-value=66 Score=29.94 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=26.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCc-EEEEecC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCD-AVFCAPG 115 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~-~v~~~~~ 115 (519)
+.+|+|+|.|+....+++.|.+. |+. .+++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 57899999999888889999887 886 4555443
No 265
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=54.04 E-value=32 Score=34.77 Aligned_cols=69 Identities=10% Similarity=0.120 Sum_probs=39.0
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc-CCC--CCccccCCCCC-CHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS-NSG--DATCIPDLDVL-DGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~-~~~--~~~~v~~~d~~-d~~~l~~~~~~~~id~Vi~ 153 (519)
+|+|+|+|+.| ....+++.|.+..|++++.++....... ... ....+ ..|.. +.+.+.++++ ++|.||-
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~--~~d~ViH 74 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFF-EGDITINKEWIEYHVK--KCDVILP 74 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEE-eCCCCCCHHHHHHHHc--CCCEEEE
Confidence 36899999854 4566888887654677776653211100 000 11222 45664 4555555554 5898885
No 266
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=54.04 E-value=69 Score=34.59 Aligned_cols=86 Identities=12% Similarity=0.189 Sum_probs=52.1
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCC--C-----CcCCCCCccccCC-CCCCHHHHHHHHHHcCCcEEE
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNA--G-----ISNSGDATCIPDL-DVLDGDAVISFCRKWSVGLVV 152 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~--~-----~~~~~~~~~v~~~-d~~d~~~l~~~~~~~~id~Vi 152 (519)
..++|.|.+.+.....++..+.++.|.+++.+..... . ...... ..+ .+ |..+.+. .+.+++.++|.++
T Consensus 327 ~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~~~~~-~~~-~i~D~~~~e~-~~~l~~~~~Dlli 403 (513)
T TIGR01861 327 KGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVARCGE-GAL-AIDDPNELEG-LEAMEMLKPDIIL 403 (513)
T ss_pred CCCEEEEECCchHHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHHHHhCCC-CcE-EecCCCHHHH-HHHHHhcCCCEEE
Confidence 3579999988876666777777666999877642211 0 011111 112 23 3444443 4566788999999
Q ss_pred ECCChhhHHHHHHHHHHCCCCee
Q 010065 153 VGPEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 153 ~g~E~~~~~~~a~~le~~gip~~ 175 (519)
.++.... + ..++|+|++
T Consensus 404 g~s~~~~---~---A~k~gIP~l 420 (513)
T TIGR01861 404 TGKRPGE---V---SKKMRVPYL 420 (513)
T ss_pred ecCccch---h---HhhcCCCEE
Confidence 8765442 2 567899975
No 267
>PLN02427 UDP-apiose/xylose synthase
Probab=53.95 E-value=33 Score=35.35 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=41.8
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC--------C-CCCccccCCCCCCHHHHHHHHHHcCCcE
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN--------S-GDATCIPDLDVLDGDAVISFCRKWSVGL 150 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~--------~-~~~~~v~~~d~~d~~~l~~~~~~~~id~ 150 (519)
+.|+|||+|+.| ....+++.|.+..|++++.++........ . .....+ ..|..|.+.+.++++ ++|+
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~-~~Dl~d~~~l~~~~~--~~d~ 89 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFH-RINIKHDSRLEGLIK--MADL 89 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEE-EcCCCChHHHHHHhh--cCCE
Confidence 457899999764 44567888876635777766532111000 0 011222 457777777777665 4788
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
||-
T Consensus 90 ViH 92 (386)
T PLN02427 90 TIN 92 (386)
T ss_pred EEE
Confidence 885
No 268
>PRK07577 short chain dehydrogenase; Provisional
Probab=53.86 E-value=51 Score=30.81 Aligned_cols=66 Identities=18% Similarity=0.065 Sum_probs=40.6
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHH----HcCCcEEEE
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCR----KWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~----~~~id~Vi~ 153 (519)
++++|+|+++ ....+++.+.+. |++++.+..+.... . ....+ ..|..+.+.+.+.++ ..++|.++.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~-G~~v~~~~r~~~~~--~-~~~~~-~~D~~~~~~~~~~~~~~~~~~~~d~vi~ 74 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANL-GHQVIGIARSAIDD--F-PGELF-ACDLADIEQTAATLAQINEIHPVDAIVN 74 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEEeCCcccc--c-CceEE-EeeCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 6799999764 456678888877 88887775442211 1 11222 457777665554443 346898886
No 269
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=53.80 E-value=13 Score=25.74 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=18.2
Q ss_pred EEEecCCHHHHHHHHHHHhhc
Q 010065 473 VTAKGKDVEEAQDRAYLAVEE 493 (519)
Q Consensus 473 vi~~g~t~~ea~~~a~~~~~~ 493 (519)
+++.|+|.+||++++++++..
T Consensus 24 ~~t~G~t~eea~~~~~eal~~ 44 (48)
T PF03681_consen 24 CFTQGDTLEEALENAKEALEL 44 (48)
T ss_dssp CEEEESSHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHH
Confidence 347999999999999999863
No 270
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=53.77 E-value=64 Score=35.24 Aligned_cols=69 Identities=9% Similarity=0.039 Sum_probs=43.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNS--GDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+.+++|+|.|...+.+++.|.+. |++++.++.+....... .....+ ..|..|.+.+. .+.-.+.|.++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~~~~~~~~~~g~~~i-~GD~~~~~~L~-~a~i~~a~~viv 487 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSRTRVDELRERGIRAV-LGNAANEEIMQ-LAHLDCARWLLL 487 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHCCCeEE-EcCCCCHHHHH-hcCccccCEEEE
Confidence 46899999998777889999877 89999887652211111 112223 45777755443 344456787765
No 271
>PRK07578 short chain dehydrogenase; Provisional
Probab=53.75 E-value=54 Score=29.88 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=38.4
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHc-CCcEEEE
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKW-SVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~-~id~Vi~ 153 (519)
|+++|+|++ +....+++.|.+. .+++.+..+. + .+ ..|..+.+.+.++.++. ++|+++.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~r~~-~--------~~-~~D~~~~~~~~~~~~~~~~id~lv~ 61 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVITAGRSS-G--------DV-QVDITDPASIRALFEKVGKVDAVVS 61 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEecCC-C--------ce-EecCCChHHHHHHHHhcCCCCEEEE
Confidence 478999976 3456678888765 5565554321 1 12 45777777777776654 6898886
No 272
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=53.63 E-value=24 Score=36.75 Aligned_cols=86 Identities=22% Similarity=0.147 Sum_probs=54.4
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCC--C-----cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAG--I-----SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~--~-----~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
..+++.|.|.+.....+++.|.+ .|.+++.+...... . .... ..+...+..|.+.+.+.+++.++|.++.
T Consensus 275 ~Gkrv~i~g~~~~~~~la~~L~e-lGm~vv~~~t~~~~~~~~~~~~~~l~--~~~~v~~~~d~~~l~~~i~~~~pDlli~ 351 (396)
T cd01979 275 RGKSIFFMGDNLLEIPLARFLTR-CGMIVVEVGTPYLDKRFQAAELELLP--PMVRIVEKPDNYRQLDRIRELRPDLVVT 351 (396)
T ss_pred cCCEEEEECCchHHHHHHHHHHH-CCCEEEeeCCCcCChHHHHHHHHhcC--CCCeEEECCCHHHHHHHHHhcCCCEEEe
Confidence 35789999888777788888887 59988776321100 0 0010 1111345567888888899999999997
Q ss_pred CCChhhHHHHHHHHHHCCCCee
Q 010065 154 GPEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 154 g~E~~~~~~~a~~le~~gip~~ 175 (519)
+-- ++.-+.+.|+|+.
T Consensus 352 ~~~------~a~pl~r~G~P~~ 367 (396)
T cd01979 352 GLG------LANPLEARGITTK 367 (396)
T ss_pred ccc------ccCcHHhCCCcce
Confidence 511 1223667777764
No 273
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.48 E-value=1.7e+02 Score=30.72 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=25.3
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
.++++|+|.|+.....+..|++. |.+++..+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~ 36 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKL-GANVTVNDG 36 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-CCEEEEEcC
Confidence 46899999997667778888877 888777653
No 274
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=53.43 E-value=61 Score=32.10 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=26.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
+.+|||+|.|+...++++.|... |+..+.+.+.
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLala-GVg~itI~D~ 51 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILA-GVKSVTLHDT 51 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcC
Confidence 46899999999888889999877 9987766443
No 275
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=53.06 E-value=57 Score=30.30 Aligned_cols=110 Identities=8% Similarity=0.042 Sum_probs=56.7
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChhh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~~ 159 (519)
..++++|+|.|.....+++.|.+. |.++++.+.+...............++ .+.+. ..+.|.++|. .+..+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~~~~~~~~~~~~g~~~v~---~~~l~----~~~~Dv~vp~A~~~~I 98 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEE-GAKLIVADINEEAVARAAELFGATVVA---PEEIY----SVDADVFAPCALGGVI 98 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHcCCEEEc---chhhc----cccCCEEEeccccccc
Confidence 347899999997777788888876 888876543211000000000000111 12222 1368889983 33322
Q ss_pred HHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCC
Q 010065 160 VSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAK 204 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~ 204 (519)
. .+.+++++.+++..... .-+.| ....+.|++.||...|
T Consensus 99 ~---~~~~~~l~~~~v~~~AN--~~~~~-~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 99 N---DDTIPQLKAKAIAGAAN--NQLAD-PRHGQMLHERGILYAP 137 (200)
T ss_pred C---HHHHHHcCCCEEEECCc--CccCC-HhHHHHHHHCCCEEeC
Confidence 2 22356666666521111 11122 4455678888888744
No 276
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=52.95 E-value=19 Score=35.14 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=44.3
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CC-C----CCccccCCCCCCHHHHHHHHH---Hc-
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NS-G----DATCIPDLDVLDGDAVISFCR---KW- 146 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~-~----~~~~v~~~d~~d~~~l~~~~~---~~- 146 (519)
.+++++|.|+. |...++++.|++. |+.++++..+..... .. . ....+ .+|..+.+++..+.. ..
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~-g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi-~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR-GYNLILVARREDKLEALAKELEDKTGVEVEVI-PADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCcHHHHHHHHHHHHHhhCceEEEE-ECcCCChhHHHHHHHHHHhcC
Confidence 46789999965 4567789999988 999999875421100 00 0 11223 567666555555443 33
Q ss_pred -CCcEEEE
Q 010065 147 -SVGLVVV 153 (519)
Q Consensus 147 -~id~Vi~ 153 (519)
.+|+++.
T Consensus 83 ~~IdvLVN 90 (265)
T COG0300 83 GPIDVLVN 90 (265)
T ss_pred CcccEEEE
Confidence 6888887
No 277
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=52.83 E-value=52 Score=30.30 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=39.5
Q ss_pred cEEEEEeCChh-HHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 83 VVVLVIGGGGR-EHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g~~-~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
|||.|||+.|. ...+...+.++ |+++..+..+........ ...+..-|..|++.+.+.+ .+.|+||.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-GHeVTAivRn~~K~~~~~-~~~i~q~Difd~~~~a~~l--~g~DaVIs 68 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-GHEVTAIVRNASKLAARQ-GVTILQKDIFDLTSLASDL--AGHDAVIS 68 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-CCeeEEEEeChHhccccc-cceeecccccChhhhHhhh--cCCceEEE
Confidence 68999997764 34566666666 999887764421111101 1112245666766665444 36788887
No 278
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=52.81 E-value=1.6e+02 Score=26.56 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=54.6
Q ss_pred ccEEEEEeCChhH-HHHHHHHHhc-CCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhh
Q 010065 82 RVVVLVIGGGGRE-HALCYALKRS-HSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPL 159 (519)
Q Consensus 82 ~~~vliiG~g~~~-~~l~~~l~~~-~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~ 159 (519)
.++|.++|+.... ..++..|++. +|++.+...+. +++..+.+.+++.+++.++|.|+.+--.+.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g--------------~f~~~~~~~i~~~I~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHG--------------YFDEEEEEAIINRINASGPDIVFVGLGAPK 113 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCC--------------CCChhhHHHHHHHHHHcCCCEEEEECCCCH
Confidence 4789999988422 2234445444 25444432111 345566789999999999999998522211
Q ss_pred HH-HHHHHHHHCCCCe-eCCcHHHHHHhcCHHHHHHHHHHcC
Q 010065 160 VS-GLANKLVKAGIPT-FGPSSEAAALEGSKNFMKNLCDKYG 199 (519)
Q Consensus 160 ~~-~~a~~le~~gip~-~g~~~~~~~~~~dK~~~k~~l~~~G 199 (519)
-. -+.+....++.++ ++.+..--..+..+...-..+++.|
T Consensus 114 QE~~~~~~~~~l~~~v~i~vG~~~d~~aG~~~raP~w~~~~g 155 (172)
T PF03808_consen 114 QERWIARHRQRLPAGVIIGVGGAFDFLAGKVKRAPKWMRRLG 155 (172)
T ss_pred HHHHHHHHHHHCCCCEEEEECchhhhhccCcCccCHHHHHcC
Confidence 11 1344456666664 2333222233333333334444443
No 279
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=52.79 E-value=42 Score=33.00 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=41.9
Q ss_pred EEEEEeCCh-hHHHHHHHHHhcC-CCcEEEEecCC----C-CCcCC-C--CCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 84 VVLVIGGGG-REHALCYALKRSH-SCDAVFCAPGN----A-GISNS-G--DATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 84 ~vliiG~g~-~~~~l~~~l~~~~-g~~~v~~~~~~----~-~~~~~-~--~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+|+|+|+.| ....+++.|.+.. +++++.++... . ..... . ....+ ..|..|.+.+.++++..++|.||-
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~d~vi~ 79 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFV-KGDIGDRELVSRLFTEHQPDAVVH 79 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEE-EcCCcCHHHHHHHHhhcCCCEEEE
Confidence 589999754 4566788887662 25666554211 0 00000 0 11222 468888888888888778999986
No 280
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=52.71 E-value=70 Score=32.18 Aligned_cols=39 Identities=28% Similarity=0.489 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCcEEEE-CCChhhHHHHHHHHHHCCCCeeC
Q 010065 136 GDAVISFCRKWSVGLVVV-GPEAPLVSGLANKLVKAGIPTFG 176 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~-g~E~~~~~~~a~~le~~gip~~g 176 (519)
.+.+.+.++++++|.++. |+++.+ .. +..|.+.|+|++|
T Consensus 81 ~~~~~~~l~~~~Id~Li~IGGdgs~-~~-a~~L~e~~i~vig 120 (317)
T cd00763 81 QAKAIEQLKKHGIDALVVIGGDGSY-MG-AMRLTEHGFPCVG 120 (317)
T ss_pred HHHHHHHHHHcCCCEEEEECCchHH-HH-HHHHHHcCCCEEE
Confidence 567778888899998887 665543 33 4456667888875
No 281
>PRK09186 flagellin modification protein A; Provisional
Probab=52.58 E-value=44 Score=31.79 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=40.7
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc-------CC--C-CCccccCCCCCCHHHHHHHHHHc---
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS-------NS--G-DATCIPDLDVLDGDAVISFCRKW--- 146 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~-------~~--~-~~~~v~~~d~~d~~~l~~~~~~~--- 146 (519)
..++++|+|++ +....++..|.+. |++++.+..+..... .. . ....+ ..|..|.+.+.++.++.
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEA-GGIVIAADIDKEALNELLESLGKEFKSKKLSLV-ELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEecChHHHHHHHHHHHhhcCCCceeEE-EecCCCHHHHHHHHHHHHHH
Confidence 35789999976 4556788888877 888777643321100 00 0 01112 45666666665555432
Q ss_pred --CCcEEEE
Q 010065 147 --SVGLVVV 153 (519)
Q Consensus 147 --~id~Vi~ 153 (519)
++|.++.
T Consensus 81 ~~~id~vi~ 89 (256)
T PRK09186 81 YGKIDGAVN 89 (256)
T ss_pred cCCccEEEE
Confidence 3787775
No 282
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=52.58 E-value=29 Score=33.04 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=40.9
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC-----CCCCccccCCCCCCHHHHHHHHHH-----cCCcEE
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN-----SGDATCIPDLDVLDGDAVISFCRK-----WSVGLV 151 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-----~~~~~~v~~~d~~d~~~l~~~~~~-----~~id~V 151 (519)
|+++|+|++ +....++..+.+. |++++.++.+...... ......+ ..|..+.+.+.++.++ .++|++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~i~~~~~~~~~~~~~id~v 78 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ-GHKVIATGRRQERLQELKDELGDNLYIA-QLDVRNRAAIEEMLASLPAEWRNIDVL 78 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhccceEEE-EecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 578999965 4556788888876 8887776533111100 0011222 4677776666555443 268988
Q ss_pred EE
Q 010065 152 VV 153 (519)
Q Consensus 152 i~ 153 (519)
+.
T Consensus 79 i~ 80 (248)
T PRK10538 79 VN 80 (248)
T ss_pred EE
Confidence 86
No 283
>PRK07023 short chain dehydrogenase; Provisional
Probab=52.52 E-value=52 Score=31.06 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=40.1
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCC-C-cCC-CCCccccCCCCCCHHHHHHHHHH---------cCCc
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAG-I-SNS-GDATCIPDLDVLDGDAVISFCRK---------WSVG 149 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~-~-~~~-~~~~~v~~~d~~d~~~l~~~~~~---------~~id 149 (519)
++++|+|++ +....+++.|.+. |++++.++.+... . ... .....+ ..|..+.+.+.+++.+ .++|
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQP-GIAVLGVARSRHPSLAAAAGERLAEV-ELDLSDAAAAAAWLAGDLLAAFVDGASRV 79 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhC-CCEEEEEecCcchhhhhccCCeEEEE-EeccCCHHHHHHHHHHHHHHHhccCCCce
Confidence 589999975 3556788888876 8887776533211 1 000 011222 5677777766664332 2467
Q ss_pred EEEE
Q 010065 150 LVVV 153 (519)
Q Consensus 150 ~Vi~ 153 (519)
.++.
T Consensus 80 ~~v~ 83 (243)
T PRK07023 80 LLIN 83 (243)
T ss_pred EEEE
Confidence 6765
No 284
>PRK07454 short chain dehydrogenase; Provisional
Probab=52.44 E-value=28 Score=32.84 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=40.7
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--------CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS--------GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--------~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
+++++|+|+. +....++..|.+. |.+++.++.+....... .....+ ..|..+.+.+....+. .+
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKA-GWDLALVARSQDALEALAAELRSTGVKAAAY-SIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhCCCcEEEE-EccCCCHHHHHHHHHHHHHHcCC
Confidence 4688999864 4556678888776 88777665321110000 011122 4677776666555443 35
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 84 id~lv~ 89 (241)
T PRK07454 84 PDVLIN 89 (241)
T ss_pred CCEEEE
Confidence 888886
No 285
>PRK06523 short chain dehydrogenase; Provisional
Probab=52.17 E-value=60 Score=30.98 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=41.6
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHH-----cCCcEEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRK-----WSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~-----~~id~Vi~ 153 (519)
.++++|+|++ +....+++.|.+. |++++.++.+.... .......+ ..|..|.+.+.++..+ .++|.++.
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~r~~~~~-~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 83 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEA-GARVVTTARSRPDD-LPEGVEFV-AADLTTAEGCAAVARAVLERLGGVDILVH 83 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHC-CCEEEEEeCChhhh-cCCceeEE-ecCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4789999965 4556788888877 88877765332111 01111223 5677776666554432 25898886
No 286
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=52.06 E-value=1.1e+02 Score=27.18 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=14.9
Q ss_pred EEEEEeCChhHH-HHHHHHHhcCCCcEEEE
Q 010065 84 VVLVIGGGGREH-ALCYALKRSHSCDAVFC 112 (519)
Q Consensus 84 ~vliiG~g~~~~-~l~~~l~~~~g~~~v~~ 112 (519)
||++.-+||... .+++.+.+. |++++.+
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~-~~~v~~~ 29 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE-GYEVHAL 29 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc-CCcEEEE
Confidence 466666776543 334444443 6665544
No 287
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=51.81 E-value=7.9 Score=44.39 Aligned_cols=19 Identities=21% Similarity=0.632 Sum_probs=17.8
Q ss_pred CceeccCCceeEEeccCCC
Q 010065 34 NLRFSVGPNFSISFNPQGS 52 (519)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ 52 (519)
|+||+.+|.+.|||||+..
T Consensus 301 airH~~~P~~GVQfHPESi 319 (918)
T PLN02889 301 GIMHSTRPHYGLQFHPESI 319 (918)
T ss_pred EEEECCCceEEEEeCCccc
Confidence 7889999999999999995
No 288
>PRK07326 short chain dehydrogenase; Provisional
Probab=51.63 E-value=28 Score=32.73 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=41.1
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC----C---CCCccccCCCCCCHHHHHHHHHHc-----CC
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN----S---GDATCIPDLDVLDGDAVISFCRKW-----SV 148 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~---~~~~~v~~~d~~d~~~l~~~~~~~-----~i 148 (519)
+++++|+|+++ ....++..|.+. |++++.+..+...... . .....+ ..|..+.+.+.+..++. ++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE-GYKVAITARDQKELEEAAAELNNKGNVLGL-AADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCHHHHHHHHHHHhccCcEEEE-EccCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999753 456678888776 8887766532111000 0 011122 45777776666655532 68
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|.||.
T Consensus 84 d~vi~ 88 (237)
T PRK07326 84 DVLIA 88 (237)
T ss_pred CEEEE
Confidence 88886
No 289
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=51.62 E-value=66 Score=30.13 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=39.1
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcC-CCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHc-CCcEEEE
Q 010065 83 VVVLVIGGG-GREHALCYALKRSH-SCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKW-SVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~-g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~-~id~Vi~ 153 (519)
|+++|+|++ +...+++..|.+.. ++.++....+............+ ..|..+.+.+.++.++. ++|.+|.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~Dls~~~~~~~~~~~~~~id~li~ 73 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPDFQHDNVQWH-ALDVTDEAEIKQLSEQFTQLDWLIN 73 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccccccCceEEE-EecCCCHHHHHHHHHhcCCCCEEEE
Confidence 579999966 45566788887652 34443332221111000111223 56888877776665544 5898886
No 290
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=51.42 E-value=41 Score=33.75 Aligned_cols=143 Identities=20% Similarity=0.147 Sum_probs=71.9
Q ss_pred CccEEEEEeCChhH-HHHHHHHHhcCC-CcEEEEecCCCCC-cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCCh
Q 010065 81 QRVVVLVIGGGGRE-HALCYALKRSHS-CDAVFCAPGNAGI-SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEA 157 (519)
Q Consensus 81 ~~~~vliiG~g~~~-~~l~~~l~~~~g-~~~v~~~~~~~~~-~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~ 157 (519)
.+++|.|||.|+.. ......+++..+ ++.+.+.+.++.. ........+ .....+.+++ ++..++|+|+...-.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~-~~~~~~~~~l---l~~~~iD~V~Iatp~ 77 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI-AKAYTDLEEL---LADPDIDAVYIATPN 77 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC-CcccCCHHHH---hcCCCCCEEEEcCCC
Confidence 35799999988432 233445554433 3444443323211 111000001 1123344444 455669999985333
Q ss_pred hhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeec---CCHHHHHHHHH--HhCCCEEEE
Q 010065 158 PLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTF---TDPNAAKQYIQ--EEGAPIVVK 228 (519)
Q Consensus 158 ~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v---~~~~~~~~~~~--~~g~P~VvK 228 (519)
.+=..++..+-+.|.+++.-.|-+.....-+ .+.++.++.|+..--.... .....+.+.++ .+|.+..++
T Consensus 78 ~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~-~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~g~lG~v~~~~ 152 (342)
T COG0673 78 ALHAELALAALEAGKHVLCEKPLALTLEEAE-ELVELARKAGVKLMVGFNRRFDPAVQALKELIDSGALGEVVSVQ 152 (342)
T ss_pred hhhHHHHHHHHhcCCEEEEcCCCCCCHHHHH-HHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhcCCcCceEEEE
Confidence 3222344445567888875555544443333 5667778877765332221 12334555554 467777666
No 291
>PRK07774 short chain dehydrogenase; Provisional
Probab=51.24 E-value=46 Score=31.52 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=42.2
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--------CCCccccCCCCCCHHHHHHHHHHc-----C
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS--------GDATCIPDLDVLDGDAVISFCRKW-----S 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--------~~~~~v~~~d~~d~~~l~~~~~~~-----~ 147 (519)
.++++|+|++ +....++..+.+. |++++.++......... .....+ ..|..+.+.+.++.++. +
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALARE-GASVVVADINAEGAERVAKQIVADGGTAIAV-QVDVSDPDSAKAMADATVSAFGG 83 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE-EcCCCCHHHHHHHHHHHHHHhCC
Confidence 4679999974 4566788888876 88887775432111000 011122 56777776666555432 5
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+||.
T Consensus 84 id~vi~ 89 (250)
T PRK07774 84 IDYLVN 89 (250)
T ss_pred CCEEEE
Confidence 899886
No 292
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=50.97 E-value=1.1e+02 Score=30.76 Aligned_cols=75 Identities=9% Similarity=0.066 Sum_probs=47.0
Q ss_pred cEEEEEeCChh-HHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhHH
Q 010065 83 VVVLVIGGGGR-EHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLVS 161 (519)
Q Consensus 83 ~~vliiG~g~~-~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~ 161 (519)
+||.|+|+.|. ..++.+.|.+.+.++...+..... ++..+.+.+ + .++|++|...-++...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-------------~~~~~~~~~---~--~~~D~vFlalp~~~s~ 63 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-------------KDAAERAKL---L--NAADVAILCLPDDAAR 63 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-------------cCcCCHhHh---h--cCCCEEEECCCHHHHH
Confidence 58999998764 467888888887777776643210 122222222 1 3689999854444444
Q ss_pred HHHHHHHHCCCCee
Q 010065 162 GLANKLVKAGIPTF 175 (519)
Q Consensus 162 ~~a~~le~~gip~~ 175 (519)
.++..+...|.+++
T Consensus 64 ~~~~~~~~~g~~VI 77 (310)
T TIGR01851 64 EAVSLVDNPNTCII 77 (310)
T ss_pred HHHHHHHhCCCEEE
Confidence 55566666788887
No 293
>PLN00198 anthocyanidin reductase; Provisional
Probab=50.79 E-value=43 Score=33.65 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=41.6
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc------CC---CCCccccCCCCCCHHHHHHHHHHcCCcE
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS------NS---GDATCIPDLDVLDGDAVISFCRKWSVGL 150 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~------~~---~~~~~v~~~d~~d~~~l~~~~~~~~id~ 150 (519)
++++|+|+|+.| ....++..|.+. |++++.+..++.... .. .....+ ..|..|.+.+.+.++ ++|.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~--~~d~ 83 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQK-GYAVNTTVRDPENQKKIAHLRALQELGDLKIF-GADLTDEESFEAPIA--GCDL 83 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHhcCCCCceEEE-EcCCCChHHHHHHHh--cCCE
Confidence 468899999765 345678888876 888765543321110 00 011222 457777777766665 5788
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
||-
T Consensus 84 vih 86 (338)
T PLN00198 84 VFH 86 (338)
T ss_pred EEE
Confidence 885
No 294
>PRK07831 short chain dehydrogenase; Provisional
Probab=50.67 E-value=38 Score=32.47 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=24.9
Q ss_pred CCccEEEEEeC-C-hhHHHHHHHHHhcCCCcEEEEec
Q 010065 80 GQRVVVLVIGG-G-GREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 80 ~~~~~vliiG~-g-~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
.+.++++|+|+ | +....++..+.+. |+++++++.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~-G~~V~~~~~ 50 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEE-GARVVISDI 50 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHc-CCEEEEEeC
Confidence 34578999997 3 5667788888877 888776643
No 295
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=50.30 E-value=1.7e+02 Score=25.36 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCcEEEEC----CChhhHHHHHHHHHHCC---CCe-eCCcHHHHHHhcCHHHHHHHHHHcCCC
Q 010065 136 GDAVISFCRKWSVGLVVVG----PEAPLVSGLANKLVKAG---IPT-FGPSSEAAALEGSKNFMKNLCDKYGIP 201 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~g----~E~~~~~~~a~~le~~g---ip~-~g~~~~~~~~~~dK~~~k~~l~~~Gi~ 201 (519)
.+.+.+.+.++++|+|... .....+..+.+.+++.+ +++ +|..... --.|-..-++.+++.|+.
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~--~~~~~~~~~~~l~~~G~~ 114 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVV--GKHDFEEVEKKFKEMGFD 114 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCC--CccChHHHHHHHHHcCCC
Confidence 4788899999999998873 22333445556666663 443 2322211 112233445667778864
No 296
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=50.23 E-value=97 Score=31.26 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=46.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCC-CCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChhh
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNA-GISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAPL 159 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~-~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~~ 159 (519)
+++|.|+|.|......+..+.+..+++.+.+...++ .... .. +......|.+.+ . .++|+|+.. +-...
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~-~~---~~v~~~~d~~e~---l--~~iDVViIctPs~th 73 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD-TE---TPVYAVADDEKH---L--DDVDVLILCMGSATD 73 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh-hc---CCccccCCHHHh---c--cCCCEEEEcCCCccC
Confidence 579999999965555677777666788776543332 1110 01 111222333332 1 579999873 22211
Q ss_pred HHHHHHHHHHCCCCeeCC
Q 010065 160 VSGLANKLVKAGIPTFGP 177 (519)
Q Consensus 160 ~~~~a~~le~~gip~~g~ 177 (519)
. ..+..+-+.|+.++.+
T Consensus 74 ~-~~~~~~L~aG~NVV~s 90 (324)
T TIGR01921 74 I-PEQAPYFAQFANTVDS 90 (324)
T ss_pred H-HHHHHHHHcCCCEEEC
Confidence 2 2233344568888743
No 297
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.16 E-value=57 Score=30.99 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=40.3
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCC-Cc-------C-CCCCccccCCCCCCHHHHHHHHHHc-----C
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAG-IS-------N-SGDATCIPDLDVLDGDAVISFCRKW-----S 147 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~-~~-------~-~~~~~~v~~~d~~d~~~l~~~~~~~-----~ 147 (519)
++++|+|+.+ ....++..|.+. |++++.++..+.. .. . ......+ ..|..+.+.+.++.+.. +
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAA-GFDLAINDRPDDEELAATQQELRALGVEVIFF-PADVADLSAHEAMLDAAQAAWGR 80 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecCchhHHHHHHHHHHhcCCceEEE-EecCCCHHHHHHHHHHHHHhcCC
Confidence 5788888663 456678888877 8888776533211 00 0 0011222 46777766665554432 6
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 81 id~vi~ 86 (256)
T PRK12745 81 IDCLVN 86 (256)
T ss_pred CCEEEE
Confidence 898887
No 298
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=50.11 E-value=46 Score=28.93 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=22.3
Q ss_pred EEEEeCChhHHHHHHHHHhcCCCcEEEEecCC
Q 010065 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGN 116 (519)
Q Consensus 85 vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~ 116 (519)
++|+|+|.-..++++.++.. |++++++++..
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 57899997667777766655 99999998763
No 299
>PRK06194 hypothetical protein; Provisional
Probab=50.05 E-value=36 Score=33.19 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=42.1
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--------CCCccccCCCCCCHHHHHHHHHHc-----C
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS--------GDATCIPDLDVLDGDAVISFCRKW-----S 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--------~~~~~v~~~d~~d~~~l~~~~~~~-----~ 147 (519)
.+++||+|++ +....+++.|.+. |+++++++.+....... .....+ ..|..|.+.+.++++.. +
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL-GMKLVLADVQQDALDRAVAELRAQGAEVLGV-RTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhcCCeEEEE-ECCCCCHHHHHHHHHHHHHHcCC
Confidence 4689999976 3556688888877 88877765321110000 011112 56777777766655542 5
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|.|+.
T Consensus 84 id~vi~ 89 (287)
T PRK06194 84 VHLLFN 89 (287)
T ss_pred CCEEEE
Confidence 898887
No 300
>PRK07102 short chain dehydrogenase; Provisional
Probab=49.93 E-value=32 Score=32.54 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=40.9
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC---------CCCccccCCCCCCHHHHHHHHHH--cCCcE
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS---------GDATCIPDLDVLDGDAVISFCRK--WSVGL 150 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~---------~~~~~v~~~d~~d~~~l~~~~~~--~~id~ 150 (519)
++++|+|+. +....++..|.+. |++++.++.+....... .....+ ..|..+.+.+.+++++ .++|.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAA-GARLYLAARDVERLERLADDLRARGAVAVSTH-ELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEE-ecCCCChHHHHHHHHHHhhcCCE
Confidence 578999965 4556788888877 88877775432111000 011122 4677776666666554 25788
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
++.
T Consensus 80 vv~ 82 (243)
T PRK07102 80 VLI 82 (243)
T ss_pred EEE
Confidence 886
No 301
>PRK00536 speE spermidine synthase; Provisional
Probab=49.87 E-value=78 Score=30.91 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=18.2
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+.++|||+|+|.. ..++.+.+... +++.++
T Consensus 72 ~pk~VLIiGGGDG--g~~REvLkh~~-~v~mVe 101 (262)
T PRK00536 72 ELKEVLIVDGFDL--ELAHQLFKYDT-HVDFVQ 101 (262)
T ss_pred CCCeEEEEcCCch--HHHHHHHCcCC-eeEEEE
Confidence 4689999999842 23555554432 455554
No 302
>PRK08278 short chain dehydrogenase; Provisional
Probab=49.79 E-value=70 Score=31.01 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=24.1
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
.++++|+|++ +....+++.|.+. |+++++++..
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~ 39 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARD-GANIVIAAKT 39 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEecc
Confidence 4689999966 3556788888877 8888777543
No 303
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.71 E-value=26 Score=33.07 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=41.2
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEE-ecCCCCCc-------CC-CCCccccCCCCCCHHHHHHHHHHc-----
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFC-APGNAGIS-------NS-GDATCIPDLDVLDGDAVISFCRKW----- 146 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~-~~~~~~~~-------~~-~~~~~v~~~d~~d~~~l~~~~~~~----- 146 (519)
+++++|+|+. +....++..+.+. |++++.+ ..+..... .. .....+ ..|..+.+.+.++++..
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE-GAKVVIAYDINEEAAQELLEEIKEEGGDAIAV-KADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEE-ECCCCCHHHHHHHHHHHHHHhC
Confidence 4689999965 4556678888766 8887766 43211100 00 011122 56777777766655432
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|+||.
T Consensus 83 ~id~vi~ 89 (247)
T PRK05565 83 KIDILVN 89 (247)
T ss_pred CCCEEEE
Confidence 6898886
No 304
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=49.43 E-value=38 Score=32.39 Aligned_cols=70 Identities=26% Similarity=0.338 Sum_probs=40.6
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCC----------CCCccccCCCCCCHHHHHHHHHH-----
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNS----------GDATCIPDLDVLDGDAVISFCRK----- 145 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~----------~~~~~v~~~d~~d~~~l~~~~~~----- 145 (519)
.++++|+|+++ ....+++.|.+. |++++.++.+....... .....+ ..|..+.+.+..++.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEE-GYRVAVADINSEKAANVAQEINAEYGEGMAYGF-GADATSEQSVLALSRGVDEIF 79 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEE-EccCCCHHHHHHHHHHHHHHc
Confidence 35799999764 456678888877 88887775432111000 011122 4577776666555443
Q ss_pred cCCcEEEE
Q 010065 146 WSVGLVVV 153 (519)
Q Consensus 146 ~~id~Vi~ 153 (519)
.++|+++.
T Consensus 80 ~~id~vv~ 87 (259)
T PRK12384 80 GRVDLLVY 87 (259)
T ss_pred CCCCEEEE
Confidence 35788776
No 305
>PRK12829 short chain dehydrogenase; Provisional
Probab=49.37 E-value=21 Score=34.17 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=42.2
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC----CCCC--ccccCCCCCCHHHHHHHHHH-----cCC
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN----SGDA--TCIPDLDVLDGDAVISFCRK-----WSV 148 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~~~~--~~v~~~d~~d~~~l~~~~~~-----~~i 148 (519)
+.++++|+|+++ ....++..|.+. |++++.+..+...... .... ..+ ..|..|.+.+.+..++ .++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~~ 87 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEA-GARVHVCDVSEAALAATAARLPGAKVTAT-VADVADPAQVERVFDTAVERFGGL 87 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhcCceEEE-EccCCCHHHHHHHHHHHHHHhCCC
Confidence 457999999764 456678888776 8887666532111100 0011 112 4677777766655543 268
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|+|+.
T Consensus 88 d~vi~ 92 (264)
T PRK12829 88 DVLVN 92 (264)
T ss_pred CEEEE
Confidence 99886
No 306
>PRK08265 short chain dehydrogenase; Provisional
Probab=49.23 E-value=38 Score=32.57 Aligned_cols=70 Identities=20% Similarity=0.157 Sum_probs=41.7
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CC-CCCccccCCCCCCHHHHHHHHHH-----cCCcE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NS-GDATCIPDLDVLDGDAVISFCRK-----WSVGL 150 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~-~~~~~v~~~d~~d~~~l~~~~~~-----~~id~ 150 (519)
.++++|+|++ +....+++.|.+. |.++++++.+..... .. .....+ ..|..+.+.+.++.++ .++|+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA-GARVAIVDIDADNGAAVAASLGERARFI-ATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCeeEEE-EecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4689999975 4556788888877 888777654321110 00 011122 4677776666555543 26888
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
++.
T Consensus 84 lv~ 86 (261)
T PRK08265 84 LVN 86 (261)
T ss_pred EEE
Confidence 886
No 307
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=49.10 E-value=57 Score=31.97 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=24.3
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFC 112 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~ 112 (519)
..+|+|+|.|+....++..|.+. |+..+.+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~-GVg~itL 59 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALART-GIGAITL 59 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCEEEE
Confidence 46899999998877789999887 8765554
No 308
>PRK05884 short chain dehydrogenase; Provisional
Probab=49.09 E-value=27 Score=32.80 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=41.6
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC---CCCccccCCCCCCHHHHHHHHHHc--CCcEEEE
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS---GDATCIPDLDVLDGDAVISFCRKW--SVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~---~~~~~v~~~d~~d~~~l~~~~~~~--~id~Vi~ 153 (519)
|+++|+|++ +....+++.+.+. |++++.++.+....... .....+ ..|..+.+.+.++.++. ++|.++.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~~~id~lv~ 75 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRND-GHKVTLVGARRDDLEVAAKELDVDAI-VCDNTDPASLEEARGLFPHHLDTIVN 75 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhccCcEE-ecCCCCHHHHHHHHHHHhhcCcEEEE
Confidence 478999975 4556788888876 88877765431111000 011223 56777777776666542 5888876
No 309
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.98 E-value=35 Score=33.75 Aligned_cols=70 Identities=20% Similarity=0.376 Sum_probs=41.5
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCC------CCccccCCCCCCHHHHHHHHHHc-----CC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGI-SNSG------DATCIPDLDVLDGDAVISFCRKW-----SV 148 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~------~~~~v~~~d~~d~~~l~~~~~~~-----~i 148 (519)
+..|||.|+| |..++++..+++. |-..++.+-+..+. .+.. .+..+ .+|..+.+++.+.+++. ++
T Consensus 38 g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g~~~~y-~cdis~~eei~~~a~~Vk~e~G~V 115 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIGEAKAY-TCDISDREEIYRLAKKVKKEVGDV 115 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcCceeEE-EecCCCHHHHHHHHHHHHHhcCCc
Confidence 4679999988 4566788888877 66666655432221 1111 11122 56777777777666542 36
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|.++.
T Consensus 116 ~ILVN 120 (300)
T KOG1201|consen 116 DILVN 120 (300)
T ss_pred eEEEe
Confidence 66664
No 310
>PRK06057 short chain dehydrogenase; Provisional
Probab=48.75 E-value=29 Score=33.22 Aligned_cols=71 Identities=23% Similarity=0.221 Sum_probs=42.6
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC-C--CCccccCCCCCCHHHHHHHHHH-----cCCcEE
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS-G--DATCIPDLDVLDGDAVISFCRK-----WSVGLV 151 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~--~~~~v~~~d~~d~~~l~~~~~~-----~~id~V 151 (519)
+.++|+|+|++ +....+++.+.+. |++++.++.+....... . ....+ ..|..+.+.+.+++++ .++|++
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~id~v 83 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAE-GATVVVGDIDPEAGKAAADEVGGLFV-PTDVTDEDAVNALFDTAAETYGSVDIA 83 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHcCCcEE-EeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 34789999985 4566788888876 88877765331110000 0 01222 5677776666655554 268988
Q ss_pred EE
Q 010065 152 VV 153 (519)
Q Consensus 152 i~ 153 (519)
+.
T Consensus 84 i~ 85 (255)
T PRK06057 84 FN 85 (255)
T ss_pred EE
Confidence 86
No 311
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=48.59 E-value=1.4e+02 Score=29.96 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=24.3
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
+|+|+|.||..-++++.|... |+..+.+.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-Gvg~ItIvD 30 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-GFGEIHIID 30 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-cCCeEEEEc
Confidence 589999998887888888877 888776643
No 312
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=48.45 E-value=61 Score=34.37 Aligned_cols=85 Identities=21% Similarity=0.087 Sum_probs=53.5
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC--CCCcC-----CCC-------CccccCCCCCCHHHHHHHHHHcC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN--AGISN-----SGD-------ATCIPDLDVLDGDAVISFCRKWS 147 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~--~~~~~-----~~~-------~~~v~~~d~~d~~~l~~~~~~~~ 147 (519)
.+++.+.|.......+++.|.+ .|.+++.+.... ..... ... ...+ .++-.|...+.+++++.+
T Consensus 314 GKrvai~Gdp~~~i~LarfL~e-lGmevV~vgt~~~~~~~~~~d~~~l~~~~~~~~~~~~v-ive~~D~~el~~~i~~~~ 391 (457)
T CHL00073 314 GKSVFFMGDNLLEISLARFLIR-CGMIVYEIGIPYMDKRYQAAELALLEDTCRKMNVPMPR-IVEKPDNYNQIQRIRELQ 391 (457)
T ss_pred CCEEEEECCCcHHHHHHHHHHH-CCCEEEEEEeCCCChhhhHHHHHHHHHHhhhcCCCCcE-EEeCCCHHHHHHHHhhCC
Confidence 4789888887788888999887 599988774221 11000 000 0111 245567888889999999
Q ss_pred CcEEEECCChhhHHHHHHHHHHCCCCe
Q 010065 148 VGLVVVGPEAPLVSGLANKLVKAGIPT 174 (519)
Q Consensus 148 id~Vi~g~E~~~~~~~a~~le~~gip~ 174 (519)
+|.++.|... +-=|++.|+|+
T Consensus 392 pDLlIgG~~~------~~Pl~~~G~p~ 412 (457)
T CHL00073 392 PDLAITGMAH------ANPLEARGINT 412 (457)
T ss_pred CCEEEccccc------cCchhhcCCcc
Confidence 9999986411 11156667654
No 313
>PRK09135 pteridine reductase; Provisional
Probab=48.44 E-value=66 Score=30.23 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=41.9
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCC-c-------CC--CCCccccCCCCCCHHHHHHHHHH-----
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGI-S-------NS--GDATCIPDLDVLDGDAVISFCRK----- 145 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~-~-------~~--~~~~~v~~~d~~d~~~l~~~~~~----- 145 (519)
.++++|+|+++ ....++..|.+. |++++.++...... . .. .....+ ..|..|.+.+..+.++
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAA-GYRVAIHYHRSAAEADALAAELNALRPGSAAAL-QADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEE-EcCCCCHHHHHHHHHHHHHHc
Confidence 46899999764 456678888776 88887775432110 0 00 011122 4677776666655554
Q ss_pred cCCcEEEE
Q 010065 146 WSVGLVVV 153 (519)
Q Consensus 146 ~~id~Vi~ 153 (519)
.++|.||-
T Consensus 84 ~~~d~vi~ 91 (249)
T PRK09135 84 GRLDALVN 91 (249)
T ss_pred CCCCEEEE
Confidence 25888886
No 314
>PRK12937 short chain dehydrogenase; Provisional
Probab=48.26 E-value=53 Score=30.88 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=41.8
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCC-c-------C-CCCCccccCCCCCCHHHHHHHHHH-----
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGI-S-------N-SGDATCIPDLDVLDGDAVISFCRK----- 145 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~-------~-~~~~~~v~~~d~~d~~~l~~~~~~----- 145 (519)
+.++++|+|++ +....++..|.+. |++++++...+... . . ......+ ..|..+.+.+.+.+++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAAD-GFAVAVNYAGSAAAADELVAEIEAAGGRAIAV-QADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEecCCCHHHHHHHHHHHHhcCCeEEEE-ECCCCCHHHHHHHHHHHHHHc
Confidence 34789999975 4556678888777 88876654322110 0 0 0011122 4677777766666554
Q ss_pred cCCcEEEE
Q 010065 146 WSVGLVVV 153 (519)
Q Consensus 146 ~~id~Vi~ 153 (519)
.++|+++.
T Consensus 82 ~~id~vi~ 89 (245)
T PRK12937 82 GRIDVLVN 89 (245)
T ss_pred CCCCEEEE
Confidence 26888887
No 315
>PRK12939 short chain dehydrogenase; Provisional
Probab=48.09 E-value=40 Score=31.83 Aligned_cols=70 Identities=24% Similarity=0.231 Sum_probs=41.2
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC--------CCCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN--------SGDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~--------~~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|++ +....++..+.+. |++++.+..+...... ......+ ..|..+.+.+.++..+ .+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA-GATVAFNDGLAAEARELAAALEAAGGRAHAI-AADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE-EccCCCHHHHHHHHHHHHHHcCC
Confidence 4789999975 4556678888776 8887766432110000 0011222 4677776666555543 36
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 85 id~vi~ 90 (250)
T PRK12939 85 LDGLVN 90 (250)
T ss_pred CCEEEE
Confidence 898886
No 316
>PRK07890 short chain dehydrogenase; Provisional
Probab=48.09 E-value=37 Score=32.34 Aligned_cols=71 Identities=24% Similarity=0.290 Sum_probs=41.4
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--------CCCccccCCCCCCHHHHHHHHHH-----c
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS--------GDATCIPDLDVLDGDAVISFCRK-----W 146 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--------~~~~~v~~~d~~d~~~l~~~~~~-----~ 146 (519)
..++++|+|++ +....++..|.+. |++++.++.+....... .....+ ..|..+.+.+..+.++ .
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARA-GADVVLAARTAERLDEVAAEIDDLGRRALAV-PTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHhCCceEEE-ecCCCCHHHHHHHHHHHHHHcC
Confidence 34789999976 3456678888876 88877665331110000 011122 5677776666555443 2
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|+++.
T Consensus 82 ~~d~vi~ 88 (258)
T PRK07890 82 RVDALVN 88 (258)
T ss_pred CccEEEE
Confidence 6888886
No 317
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=48.04 E-value=68 Score=30.02 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=41.0
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCC-Cc-------CC-CCCccccCCCCCCHHHHHHHHHH-----
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAG-IS-------NS-GDATCIPDLDVLDGDAVISFCRK----- 145 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~-~~-------~~-~~~~~v~~~d~~d~~~l~~~~~~----- 145 (519)
+.++++|+|+.+ ....++..|.+. |++++++...... .. .. .....+ ..|..+.+.+.+..++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~ 81 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQ-GANVVINYASSEAGAEALVAEIGALGGKALAV-QGDVSDAESVERAVDEAKAEF 81 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCchhHHHHHHHHHHhcCCceEEE-EcCCCCHHHHHHHHHHHHHHc
Confidence 346899999763 456678888776 8887666433211 00 00 011112 4577777666655443
Q ss_pred cCCcEEEE
Q 010065 146 WSVGLVVV 153 (519)
Q Consensus 146 ~~id~Vi~ 153 (519)
.++|+|+.
T Consensus 82 ~~id~vi~ 89 (248)
T PRK05557 82 GGVDILVN 89 (248)
T ss_pred CCCCEEEE
Confidence 26888886
No 318
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.04 E-value=58 Score=30.48 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=40.7
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCC-c-------C-CCCCccccCCCCCCHHHHHHHHHH-----c
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGI-S-------N-SGDATCIPDLDVLDGDAVISFCRK-----W 146 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~-~-------~-~~~~~~v~~~d~~d~~~l~~~~~~-----~ 146 (519)
.++++|+|+.+ ....++..|.+. |++++.+...+... . . ......+ ..|..+.+.+.++..+ .
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~~~~~ 83 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARA-GADVVVHYRSDEEAAEELVEAVEALGRRAQAV-QADVTDKAALEAAVAAAVERFG 83 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHHHhcCCceEEE-ECCcCCHHHHHHHHHHHHHHcC
Confidence 46899999764 456678888776 88765543322110 0 0 0011222 4677777766665543 2
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|+|+.
T Consensus 84 ~id~vi~ 90 (249)
T PRK12825 84 RIDILVN 90 (249)
T ss_pred CCCEEEE
Confidence 6898886
No 319
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=48.02 E-value=72 Score=33.89 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=53.4
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCc---CC-C--CCccccCCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGIS---NS-G--DATCIPDLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~---~~-~--~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
..+++.|.+.+.+...++..|.++.|.+++.+........ .. . ....+ .++..+...+.+.+++.++|+++.+
T Consensus 324 ~GkrvaI~~~~~~~~~l~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~~~~~~~-~i~d~~~~e~~~~i~~~~pDllig~ 402 (457)
T TIGR01284 324 RGKKVWVWSGGPKLWHWPRPLEDELGMEVVAVSTKFGHEDDYEKIIARVREGTV-IIDDPNELELEEIIEKYKPDIILTG 402 (457)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEEEEeCCHHHHHHHHHhcCCCeE-EEeCCCHHHHHHHHHhcCCCEEEec
Confidence 4578988877766666777777666998877532211000 00 0 01112 2344456677888888999998876
Q ss_pred CChhhHHHHHHHHHHCCCCee
Q 010065 155 PEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~ 175 (519)
.-... + ..++|+|++
T Consensus 403 ~~~~~---~---a~k~gip~~ 417 (457)
T TIGR01284 403 IREGE---L---AKKLGVPYI 417 (457)
T ss_pred CCcch---h---hhhcCCCEE
Confidence 43322 2 557899986
No 320
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=47.86 E-value=10 Score=34.99 Aligned_cols=20 Identities=15% Similarity=0.203 Sum_probs=17.6
Q ss_pred CCceeccCCceeEEeccCCC
Q 010065 33 NNLRFSVGPNFSISFNPQGS 52 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ 52 (519)
++++|...|.+.||||||..
T Consensus 153 ~a~~~~~~~i~GvQfHPE~~ 172 (187)
T PRK08007 153 MGIRHRQWDLEGVQFHPESI 172 (187)
T ss_pred EEEEeCCCCEEEEEeCCccc
Confidence 47789899999999999984
No 321
>PRK05717 oxidoreductase; Validated
Probab=47.86 E-value=50 Score=31.51 Aligned_cols=70 Identities=21% Similarity=0.188 Sum_probs=40.7
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CC-CCCccccCCCCCCHHHHHHHHHH----c-CCcE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NS-GDATCIPDLDVLDGDAVISFCRK----W-SVGL 150 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~-~~~~~v~~~d~~d~~~l~~~~~~----~-~id~ 150 (519)
.++++|+|++ +....++..|.+. |.++++++....... .. .....+ ..|..+.+.+.++.++ . ++|+
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~g~id~ 87 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAE-GWQVVLADLDRERGSKVAKALGENAWFI-AMDVADEAQVAAGVAEVLGQFGRLDA 87 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHcCCceEEE-EccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4789999975 3456678888876 888777643211000 00 011222 5677776666544333 2 5898
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
+|.
T Consensus 88 li~ 90 (255)
T PRK05717 88 LVC 90 (255)
T ss_pred EEE
Confidence 886
No 322
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=47.79 E-value=1.1e+02 Score=32.14 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=52.8
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCc-C--------CCCCccccCCCCCCHHHHHHHHHHcCCcEE
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGIS-N--------SGDATCIPDLDVLDGDAVISFCRKWSVGLV 151 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~-~--------~~~~~~v~~~d~~d~~~l~~~~~~~~id~V 151 (519)
..+++.|.|.......++..|.+. |.+++.+........ . ....... .+...|..++.+.+++.++|.+
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e~-G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~d~~el~~~i~~~~pdli 375 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLEM-GAEPVAAVTGTDNPPFEKRMELLASLEGIPAE-VVFVGDLWDLESLAKEEPVDLL 375 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHHc-CCcceEEEEcCCCchhHHHHHHhhhhcCCCce-EEECCCHHHHHHHhhccCCCEE
Confidence 357898888776777788888865 777765532211110 0 0000000 2344578888888999999999
Q ss_pred EECCChhhHHHHHHHHHHCCCCee
Q 010065 152 VVGPEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 152 i~g~E~~~~~~~a~~le~~gip~~ 175 (519)
+.++-.. .+ .+++|+|++
T Consensus 376 ig~~~~~---~~---a~~~~ip~i 393 (428)
T cd01965 376 IGNSHGR---YL---ARDLGIPLV 393 (428)
T ss_pred EECchhH---HH---HHhcCCCEE
Confidence 9753222 22 556788876
No 323
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=47.66 E-value=1.2e+02 Score=29.15 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=23.7
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+|+|+|.|+..-.+++.|... |+..+.+-
T Consensus 1 kVlvvG~GGlG~eilk~La~~-Gvg~i~iv 29 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-GFGQIHVI 29 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 589999999888889998877 88776653
No 324
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=47.35 E-value=91 Score=28.21 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=23.7
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcE-EEEecC
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDA-VFCAPG 115 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~-v~~~~~ 115 (519)
+|+|+|.|+....+++.|.+. |+.. .++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 589999998877789998877 8874 444443
No 325
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=47.34 E-value=26 Score=28.61 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=45.1
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECC-Chhh
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGP-EAPL 159 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~-E~~~ 159 (519)
+.++|||+|+|.....-+..|.+. |-++.++.+...... ...... ....+.. -.+.+.|+... +..+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~~~~~~--~~i~~~----~~~~~~~-----l~~~~lV~~at~d~~~ 73 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA-GAKVTVISPEIEFSE--GLIQLI----RREFEED-----LDGADLVFAATDDPEL 73 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESSEHHHH--TSCEEE----ESS-GGG-----CTTESEEEE-SS-HHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCchhhhh--hHHHHH----hhhHHHH-----HhhheEEEecCCCHHH
Confidence 457999999996554446666655 788888766520000 000000 0111000 12467888854 4444
Q ss_pred HHHHHHHHHHCCCCee
Q 010065 160 VSGLANKLVKAGIPTF 175 (519)
Q Consensus 160 ~~~~a~~le~~gip~~ 175 (519)
...+.+.+++.|+|+.
T Consensus 74 n~~i~~~a~~~~i~vn 89 (103)
T PF13241_consen 74 NEAIYADARARGILVN 89 (103)
T ss_dssp HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhhCCEEEE
Confidence 5567777888999875
No 326
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=47.21 E-value=67 Score=33.79 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=49.2
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCc---C----CC-CCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGIS---N----SG-DATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~---~----~~-~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.+++.|.|.......++..|.+. |.+++.+........ . .. ....+..++..|..++.+++++.++|.++-
T Consensus 300 gkrv~v~g~~~~~~~l~~~L~el-G~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~~~dliiG 378 (429)
T cd03466 300 GRKAAIYGEPDFVVAITRFVLEN-GMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKELKIDVLIG 378 (429)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHC-CCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhcCCCEEEE
Confidence 46899988766667778888754 888755543211110 0 00 001111234556777777777778887776
Q ss_pred CCChhhHHHHHHHHHHCCCCee
Q 010065 154 GPEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 154 g~E~~~~~~~a~~le~~gip~~ 175 (519)
++-.. .+ ..++|+|++
T Consensus 379 ~s~~~---~~---a~~~~ip~~ 394 (429)
T cd03466 379 NSYGR---RI---AEKLGIPLI 394 (429)
T ss_pred CchhH---HH---HHHcCCCEE
Confidence 43221 12 456677764
No 327
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=47.17 E-value=1.1e+02 Score=30.80 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=25.3
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+++|.|+|+|...-+++..+.+. |.++.+..
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n-g~~V~lw~ 31 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN-GHEVRLWG 31 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc-CCeeEEEe
Confidence 36899999998888899999887 77776654
No 328
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=47.13 E-value=58 Score=32.07 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=42.3
Q ss_pred EEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCC-CcCCC------CCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 84 VVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAG-ISNSG------DATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 84 ~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~~------~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
||||+|+.| ....+++.|.+. |++++.++..... ..... ....+ ..|..+.+.+.++.+..++|.|+.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~-g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~d~vv~ 76 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES-GHEVVVLDNLSNGSPEALKRGERITRVTFV-EGDLRDRELLDRLFEEHKIDAVIH 76 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC-CCeEEEEeCCCccchhhhhhhccccceEEE-ECCCCCHHHHHHHHHhCCCcEEEE
Confidence 589998754 456788888776 8887665421111 00000 01122 467778888888877778999986
No 329
>PLN02253 xanthoxin dehydrogenase
Probab=46.98 E-value=40 Score=32.74 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=42.5
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CC---CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NS---GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~---~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
+.++++|+|++ +....+++.|.+. |.++++++....... .. .....+ ..|..|.+.+.++++. .+
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~~~g~ 94 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKH-GAKVCIVDLQDDLGQNVCDSLGGEPNVCFF-HCDVTVEDDVSRAVDFTVDKFGT 94 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCceEEE-EeecCCHHHHHHHHHHHHHHhCC
Confidence 35789999966 3456688888877 888877753311100 00 011222 5677777666655543 26
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|.++.
T Consensus 95 id~li~ 100 (280)
T PLN02253 95 LDIMVN 100 (280)
T ss_pred CCEEEE
Confidence 898886
No 330
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=46.81 E-value=47 Score=31.52 Aligned_cols=70 Identities=23% Similarity=0.304 Sum_probs=42.0
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--------CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS--------GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--------~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|+. +....++..|.+. |++++.++.+....... .....+ ..|..|.+.+.++++. .+
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKE-GAKVVIADLNDEAAAAAAEALQKAGGKAIGV-AMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEE-EcCCCCHHHHHHHHHHHHHHcCC
Confidence 4689999965 4556788888776 88887775432111000 011122 5677777766665543 26
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+|+.
T Consensus 82 ~d~vi~ 87 (258)
T PRK12429 82 VDILVN 87 (258)
T ss_pred CCEEEE
Confidence 888886
No 331
>PRK05867 short chain dehydrogenase; Provisional
Probab=46.81 E-value=37 Score=32.36 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=41.2
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--------CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS--------GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--------~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|++ +....++..|.+. |++++.+..+....... .....+ ..|..+.+.+.+++++ .+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEA-GAQVAIAARHLDALEKLADEIGTSGGKVVPV-CCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE-EccCCCHHHHHHHHHHHHHHhCC
Confidence 4689999975 4556788888877 88877664321110000 011122 4677776666655543 26
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 87 id~lv~ 92 (253)
T PRK05867 87 IDIAVC 92 (253)
T ss_pred CCEEEE
Confidence 888886
No 332
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=46.77 E-value=10 Score=34.91 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.7
Q ss_pred CceeccCCceeEEeccCCC
Q 010065 34 NLRFSVGPNFSISFNPQGS 52 (519)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ 52 (519)
+++|...|.+.+|||||..
T Consensus 155 a~~~~~~~i~gvQfHPE~~ 173 (188)
T TIGR00566 155 AIRHRDLPLEGVQFHPESI 173 (188)
T ss_pred EEEeCCCCEEEEEeCCCcc
Confidence 5678889999999999974
No 333
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=46.77 E-value=34 Score=28.18 Aligned_cols=82 Identities=17% Similarity=0.089 Sum_probs=45.2
Q ss_pred EEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcC--CCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC-CChhhHH
Q 010065 85 VLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISN--SGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG-PEAPLVS 161 (519)
Q Consensus 85 vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~--~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g-~E~~~~~ 161 (519)
|+|+|.|.....++..|.+. +.++++++.+...... ......+ ..|..+.+.+.+. .-.+.+.++.. .++....
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~~~~~~~~~~~~~~i-~gd~~~~~~l~~a-~i~~a~~vv~~~~~d~~n~ 77 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDPERVEELREEGVEVI-YGDATDPEVLERA-GIEKADAVVILTDDDEENL 77 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHTTSEEE-ES-TTSHHHHHHT-TGGCESEEEEESSSHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCcHHHHHHHhcccccc-cccchhhhHHhhc-CccccCEEEEccCCHHHHH
Confidence 68999998778899999885 7778877654211100 0111223 5677776655443 33467777763 4444433
Q ss_pred HHHHHHHH
Q 010065 162 GLANKLVK 169 (519)
Q Consensus 162 ~~a~~le~ 169 (519)
.++..++.
T Consensus 78 ~~~~~~r~ 85 (116)
T PF02254_consen 78 LIALLARE 85 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 334
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=46.66 E-value=53 Score=36.72 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=36.4
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+|||||+|+.| ....+++.|.+. |+++.+. ..+..|.+.+...+.+.++|.||-
T Consensus 380 ~mkiLVtGa~G~iG~~l~~~L~~~-g~~v~~~-----------------~~~l~d~~~v~~~i~~~~pd~Vih 434 (668)
T PLN02260 380 SLKFLIYGRTGWIGGLLGKLCEKQ-GIAYEYG-----------------KGRLEDRSSLLADIRNVKPTHVFN 434 (668)
T ss_pred CceEEEECCCchHHHHHHHHHHhC-CCeEEee-----------------ccccccHHHHHHHHHhhCCCEEEE
Confidence 47999999865 455677777655 7665221 112345667777777889999996
No 335
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.50 E-value=42 Score=32.14 Aligned_cols=71 Identities=10% Similarity=0.123 Sum_probs=41.7
Q ss_pred CccEEEEEeCC---hhHHHHHHHHHhcCCCcEEEEecCCCCC---cCC--CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 81 QRVVVLVIGGG---GREHALCYALKRSHSCDAVFCAPGNAGI---SNS--GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 81 ~~~~vliiG~g---~~~~~l~~~l~~~~g~~~v~~~~~~~~~---~~~--~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
+.+.++|+|++ +...++++.|.+. |.+++....+.... ... .....+ ..|..|.+.+.++.++ .+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~v~~~~~~~~~~~g~ 83 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQ-GATVIYTYQNDRMKKSLQKLVDEEDLLV-ECDVASDESIERAFATIKERVGK 83 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHC-CCEEEEecCchHHHHHHHhhccCceeEE-eCCCCCHHHHHHHHHHHHHHhCC
Confidence 45789999975 6677889999887 88877664321100 000 011122 4677775555544332 35
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 84 iD~lv~ 89 (252)
T PRK06079 84 IDGIVH 89 (252)
T ss_pred CCEEEE
Confidence 888876
No 336
>PRK07411 hypothetical protein; Validated
Probab=46.47 E-value=1.9e+02 Score=30.09 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=25.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+.+|+|+|.|+....++..|... |+..+.+.
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~-Gvg~l~lv 68 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA-GIGRIGIV 68 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CCCEEEEE
Confidence 46899999999888889999877 88876654
No 337
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=46.34 E-value=1.2e+02 Score=30.97 Aligned_cols=107 Identities=17% Similarity=0.067 Sum_probs=59.0
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
.++||++.=|||....++-.|.++.|++++-+.-.+... +.... .....|.......|...++..-+..-+....
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~----~~~~~-C~s~~d~~da~~va~~LGIp~~~vdf~~~y~ 76 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDE----DGGGG-CCSEEDLRDAERVADQLGIPLYVVDFEKEFW 76 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHHcCCeEEEEEEEeecc----CCCCc-CCchhHHHHHHHHHHHhCCceEEEchHHHHH
Confidence 467888888888665555555555599998875432110 00101 1233456677788888898887775444443
Q ss_pred HHH-HHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHH
Q 010065 161 SGL-ANKLVKAGIPTFGPSSEAAALEGSKNFMKNLC 195 (519)
Q Consensus 161 ~~~-a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l 195 (519)
..+ ...++.++- |-.+.-...|+....++.++
T Consensus 77 ~~V~~~f~~~Y~~---G~TPNPci~CN~~iKF~~~l 109 (356)
T COG0482 77 NKVFEYFLAEYKA---GKTPNPCILCNKEIKFKALL 109 (356)
T ss_pred HHHHHHHHHHHhC---CCCCCcchhcCHHHHHHHHH
Confidence 322 222333321 33333444565555555544
No 338
>PRK07806 short chain dehydrogenase; Provisional
Probab=46.26 E-value=71 Score=30.15 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=39.3
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCC-cC----C----CCCccccCCCCCCHHHHHHHHHH-----c
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGI-SN----S----GDATCIPDLDVLDGDAVISFCRK-----W 146 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~----~----~~~~~v~~~d~~d~~~l~~~~~~-----~ 146 (519)
.++++|+|++ +....++..|.+. |++++.+..+.... .. . .....+ ..|..+.+.+..+.++ .
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~-G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGA-GAHVVVNYRQKAPRANKVVAEIEAAGGRASAV-GADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHC-CCEEEEEeCCchHhHHHHHHHHHhcCCceEEE-EcCCCCHHHHHHHHHHHHHhCC
Confidence 3689999964 4556678888766 88876654322110 00 0 001112 4577776666555443 2
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|.++.
T Consensus 84 ~~d~vi~ 90 (248)
T PRK07806 84 GLDALVL 90 (248)
T ss_pred CCcEEEE
Confidence 5787775
No 339
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=46.25 E-value=84 Score=36.68 Aligned_cols=87 Identities=15% Similarity=0.238 Sum_probs=55.6
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC---c---CCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI---S---NSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~---~---~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
..+++.|.+.+.+...++..|.+ .|.+++.+...+... . ........ .++..|...+.+.+++.++|+++.+
T Consensus 319 ~GKrv~i~~g~~~~~~la~~l~e-lGmevv~~g~~~~~~~d~~~~~~~~~~~~~-vi~~~d~~el~~~i~~~~pDLlig~ 396 (917)
T PRK14477 319 EGKRVVLFTGGVKTWSMVNALRE-LGVEVLAAGTQNSTLEDFARMKALMHKDAH-IIEDTSTAGLLRVMREKMPDLIVAG 396 (917)
T ss_pred cCCEEEEECCCchHHHHHHHHHH-CCCEEEEEcCCCCCHHHHHHHHHhcCCCCE-EEECCCHHHHHHHHHhcCCCEEEec
Confidence 35789998877777778888865 499887653221110 0 00000111 2345578889999999999999987
Q ss_pred CChhhHHHHHHHHHHCCCCee
Q 010065 155 PEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~ 175 (519)
+.... + .+++|+|++
T Consensus 397 ~~~~~---~---a~k~giP~~ 411 (917)
T PRK14477 397 GKTKF---L---ALKTRTPFL 411 (917)
T ss_pred Cchhh---H---HHHcCCCeE
Confidence 65543 2 557888876
No 340
>PRK05875 short chain dehydrogenase; Provisional
Probab=46.19 E-value=39 Score=32.66 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=41.1
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CC------CCCccccCCCCCCHHHHHHHHHHc----
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NS------GDATCIPDLDVLDGDAVISFCRKW---- 146 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~------~~~~~v~~~d~~d~~~l~~~~~~~---- 146 (519)
.++++|+|++ +....++..|.+. |++++.+..+..... .. .....+ ..|..+.+.+.+..++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAA-GAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYE-PADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhccCCCceEEE-EcCCCCHHHHHHHHHHHHHHc
Confidence 4789999975 4556678888776 888776653211100 00 011112 45777766666555542
Q ss_pred -CCcEEEE
Q 010065 147 -SVGLVVV 153 (519)
Q Consensus 147 -~id~Vi~ 153 (519)
++|+++.
T Consensus 85 ~~~d~li~ 92 (276)
T PRK05875 85 GRLHGVVH 92 (276)
T ss_pred CCCCEEEE
Confidence 6888886
No 341
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=46.14 E-value=2.9e+02 Score=26.91 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=22.4
Q ss_pred ccEEEEEeCChh-HHHHHHHHHhcCCCcEEEE
Q 010065 82 RVVVLVIGGGGR-EHALCYALKRSHSCDAVFC 112 (519)
Q Consensus 82 ~~~vliiG~g~~-~~~l~~~l~~~~g~~~v~~ 112 (519)
++||.|.|+.|+ .+.+++++.+..+++.+..
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa 33 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAA 33 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEE
Confidence 578999998764 4667888877766665443
No 342
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=46.08 E-value=5.9 Score=36.40 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=19.3
Q ss_pred CCceeccCCceeEEeccCCCccc
Q 010065 33 NNLRFSVGPNFSISFNPQGSKSS 55 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~ 55 (519)
.+++|.-.|.+.+|||||.....
T Consensus 157 ~~~~~~~~~i~g~QfHPE~~~~~ 179 (192)
T PF00117_consen 157 QAIRHKDNPIYGVQFHPEFSSSP 179 (192)
T ss_dssp EEEEECTTSEEEESSBTTSTTST
T ss_pred ccccccccEEEEEecCCcCCCCC
Confidence 46788888999999999997554
No 343
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=45.91 E-value=1.2e+02 Score=30.87 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCcEEEE-CCChhhHHHHHHHHHHCCCCeeCC
Q 010065 136 GDAVISFCRKWSVGLVVV-GPEAPLVSGLANKLVKAGIPTFGP 177 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~-g~E~~~~~~~a~~le~~gip~~g~ 177 (519)
.+..++-+++.++|+++. |+++-. .+.+.+.|..++|++|-
T Consensus 83 ~~~~~~~l~~~gId~LvvIGGDgS~-~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 83 RKVAAENLKKLGIDALVVIGGDGSY-TGAALLAEEGGIPVVGV 124 (347)
T ss_pred HHHHHHHHHHcCCCEEEEECCCChH-HHHHHHHHhcCCcEEec
Confidence 455666677889998887 666544 34444444555888863
No 344
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=45.85 E-value=42 Score=34.00 Aligned_cols=68 Identities=12% Similarity=-0.017 Sum_probs=41.4
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc----C---CCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS----N---SGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~---~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.++|||+|+.| ....++..|.+. |++++.+..+..... . ......+ ..|..+.+.+.++++ ++|.||-
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~--~~d~Vih 85 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQR-GYTVHATLRDPAKSLHLLSKWKEGDRLRLF-RADLQEEGSFDEAVK--GCDGVFH 85 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHhhccCCeEEEE-ECCCCCHHHHHHHHc--CCCEEEE
Confidence 47899999754 456678888877 888776643211100 0 0011222 467777777766664 5888886
No 345
>PRK14851 hypothetical protein; Provisional
Probab=45.84 E-value=1.6e+02 Score=33.10 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=25.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+.+|+|+|.||....++..|... |+..+.+.
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~-GVG~l~Lv 73 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRT-GIGRFHIA 73 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHh-CCCeEEEE
Confidence 57999999998877788888877 88776654
No 346
>PRK08219 short chain dehydrogenase; Provisional
Probab=45.55 E-value=37 Score=31.49 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=41.6
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc----CCCCCccccCCCCCCHHHHHHHHHHc-CCcEEEE
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS----NSGDATCIPDLDVLDGDAVISFCRKW-SVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~~~~~~v~~~d~~d~~~l~~~~~~~-~id~Vi~ 153 (519)
+++++|+|+++ ....++..|.+. ++++.++.+..... .......+ ..|..|.+.+.++.+.. ++|+|+-
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~id~vi~ 77 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--HTLLLGGRPAERLDELAAELPGATPF-PVDLTDPEAIAAAVEQLGRLDVLVH 77 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeCCHHHHHHHHHHhccceEE-ecCCCCHHHHHHHHHhcCCCCEEEE
Confidence 36899999764 455677777765 66666653321110 01111222 56888888887777654 6898886
No 347
>PRK06138 short chain dehydrogenase; Provisional
Probab=45.22 E-value=47 Score=31.45 Aligned_cols=70 Identities=20% Similarity=0.181 Sum_probs=41.9
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC----C---CCCccccCCCCCCHHHHHHHHHH-----cCC
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN----S---GDATCIPDLDVLDGDAVISFCRK-----WSV 148 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~---~~~~~v~~~d~~d~~~l~~~~~~-----~~i 148 (519)
.++++|+|+++ ....++..|.+. |.+++.+..+...... . .....+ ..|..|.+.+.+++.+ .++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~i~~~~~~i 82 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFARE-GARVVVADRDAEAAERVAAAIAAGGRAFAR-QGDVGSAEAVEALVDFVAARWGRL 82 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC-CCeEEEecCCHHHHHHHHHHHhcCCeEEEE-EcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999763 456678888876 8887766432110000 0 011122 5677777777666554 268
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|+|+.
T Consensus 83 d~vi~ 87 (252)
T PRK06138 83 DVLVN 87 (252)
T ss_pred CEEEE
Confidence 98887
No 348
>PRK12828 short chain dehydrogenase; Provisional
Probab=45.21 E-value=55 Score=30.51 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=39.9
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCC----cCC--CCCccccCCCCCCHHHHHHHHHH-----cCCc
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGI----SNS--GDATCIPDLDVLDGDAVISFCRK-----WSVG 149 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~----~~~--~~~~~v~~~d~~d~~~l~~~~~~-----~~id 149 (519)
.++++|+|+++ ....++..+.+. |++++.++.+.... ... .....+ ..|..|.+.+.+..++ .++|
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~~d 84 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAAR-GARVALIGRGAAPLSQTLPGVPADALRIG-GIDLVDPQAARRAVDEVNRQFGRLD 84 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHC-CCeEEEEeCChHhHHHHHHHHhhcCceEE-EeecCCHHHHHHHHHHHHHHhCCcC
Confidence 47899999764 445677888776 88877765431110 000 011112 4566676666555443 2588
Q ss_pred EEEE
Q 010065 150 LVVV 153 (519)
Q Consensus 150 ~Vi~ 153 (519)
+|+-
T Consensus 85 ~vi~ 88 (239)
T PRK12828 85 ALVN 88 (239)
T ss_pred EEEE
Confidence 8876
No 349
>PRK05866 short chain dehydrogenase; Provisional
Probab=44.99 E-value=52 Score=32.45 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=41.9
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC--------CCCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN--------SGDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~--------~~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|++ +....+++.|.+. |++++.++.+...... ......+ ..|..|.+.+.++++. .+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~-G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~-~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARR-GATVVAVARREDLLDAVADRITRAGGDAMAV-PCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEE-EccCCCHHHHHHHHHHHHHHcCC
Confidence 3679999975 4566788888877 8888777543211000 0011122 4677776666655542 26
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|.++.
T Consensus 118 id~li~ 123 (293)
T PRK05866 118 VDILIN 123 (293)
T ss_pred CCEEEE
Confidence 898887
No 350
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.97 E-value=42 Score=35.83 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=26.2
Q ss_pred CCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 79 AGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 79 ~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
....++|+|+|.|+...+++..|.+. |+++...+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~-G~~V~~~D 45 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSEL-GCDVVVAD 45 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHC-CCEEEEEC
Confidence 34567899999998777888888877 88665554
No 351
>PRK06181 short chain dehydrogenase; Provisional
Probab=44.90 E-value=35 Score=32.67 Aligned_cols=69 Identities=25% Similarity=0.402 Sum_probs=39.8
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc-------CCC-CCccccCCCCCCHHHHHHHHHHc-----CC
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS-------NSG-DATCIPDLDVLDGDAVISFCRKW-----SV 148 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~-------~~~-~~~~v~~~d~~d~~~l~~~~~~~-----~i 148 (519)
+++||+|+. +....++..|.+. |++++.++.+..... ... ....+ ..|..|.+.+.++.++. ++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~-g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARA-GAQLVLAARNETRLASLAQELADHGGEALVV-PTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE-EccCCCHHHHHHHHHHHHHHcCCC
Confidence 578999975 4556678888766 888777654311100 000 01112 45777766666555432 68
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|+|+.
T Consensus 80 d~vi~ 84 (263)
T PRK06181 80 DILVN 84 (263)
T ss_pred CEEEE
Confidence 88886
No 352
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=44.74 E-value=0.69 Score=46.46 Aligned_cols=95 Identities=20% Similarity=0.102 Sum_probs=57.4
Q ss_pred hcCHHHHHHHHHHcCCCCCCeeecC-CHHHHHHHHHHhCCCEEEEeCCCCCCCcEEEeCC----HHHHHHHHHHHHhhcc
Q 010065 185 EGSKNFMKNLCDKYGIPTAKYKTFT-DPNAAKQYIQEEGAPIVVKADGLAAGKGVIVAMT----LEEAYEAVDSMLLKNA 259 (519)
Q Consensus 185 ~~dK~~~k~~l~~~Gi~~p~~~~v~-~~~~~~~~~~~~g~P~VvKP~~g~gs~GV~~v~~----~~el~~a~~~~~~~~~ 259 (519)
+.+|..++..+++.++..|.-.-.. ....+..+++.+|+|++.||..++.+.++..... .+.+..+...++..
T Consensus 49 ~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~-- 126 (317)
T COG1181 49 MLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTR-- 126 (317)
T ss_pred EeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeec--
Confidence 3444444477777777766543332 2334677888899999999999888777654321 12222221111110
Q ss_pred CCCCCCcEEEEeccCCcEEEEEEE
Q 010065 260 FGSAGCRVIIEEFLEGEEASFFAL 283 (519)
Q Consensus 260 ~~~~~~~~lvEe~I~G~E~sv~~l 283 (519)
....++++|++.+|..|.+-+.
T Consensus 127 --~~~~~~~~e~~~~~l~~p~~Vk 148 (317)
T COG1181 127 --DEYSSVIVEEVEEGLGFPLFVK 148 (317)
T ss_pred --ccchhHHHHHhhcccCCCEEEE
Confidence 0005678889998888888666
No 353
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=44.63 E-value=1.7e+02 Score=28.25 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=45.5
Q ss_pred EEEEeCChhHHHHHHHHHhcC-CCcEEEEecC-CCCCcCCCCCccccCCCCCCHHHHHHHHH-HcCCcEEEECCChhhHH
Q 010065 85 VLVIGGGGREHALCYALKRSH-SCDAVFCAPG-NAGISNSGDATCIPDLDVLDGDAVISFCR-KWSVGLVVVGPEAPLVS 161 (519)
Q Consensus 85 vliiG~g~~~~~l~~~l~~~~-g~~~v~~~~~-~~~~~~~~~~~~v~~~d~~d~~~l~~~~~-~~~id~Vi~g~E~~~~~ 161 (519)
|.|+.+|--...+.+.+++.. ..+.+++.+. +.+... ...+.+ ..-.....+... +.++|+++..+.+....
T Consensus 1 IgvfDSGiGGltv~~~l~~~~p~~~~iy~~D~~~~PYG~-ks~~~i----~~~~~~~~~~L~~~~g~d~ivIaCNTA~a~ 75 (251)
T TIGR00067 1 IGVFDSGVGGLSVLKEIRKQLPKEHYIYVGDTKRFPYGE-KSPEFI----LEYVLELLTFLKERHNIKLLVVACNTASAL 75 (251)
T ss_pred CEEEeCCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCC-CCHHHH----HHHHHHHHHHHHHhCCCCEEEEeCchHHHH
Confidence 356666633344666666654 5566666443 211110 000000 000223344455 67899999877766533
Q ss_pred HHHHHHHHCCCCeeCCc
Q 010065 162 GLANKLVKAGIPTFGPS 178 (519)
Q Consensus 162 ~~a~~le~~gip~~g~~ 178 (519)
.+.+.-+...+|++|.-
T Consensus 76 ~~~~l~~~~~iPii~ii 92 (251)
T TIGR00067 76 ALEDLQRNFDFPVVGVI 92 (251)
T ss_pred HHHHHHHHCCCCEEeec
Confidence 34444456789999743
No 354
>PRK06940 short chain dehydrogenase; Provisional
Probab=44.61 E-value=39 Score=32.89 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=22.6
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
++.++|.|+|+....+++.|. . |.+++.++.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~-G~~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-A-GKKVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-C-CCEEEEEeC
Confidence 456788888777777888885 4 888777653
No 355
>PRK06196 oxidoreductase; Provisional
Probab=44.48 E-value=35 Score=33.95 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=42.5
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CCCCCccccCCCCCCHHHHHHHHHH-----cCCcEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NSGDATCIPDLDVLDGDAVISFCRK-----WSVGLV 151 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~~~~~~v~~~d~~d~~~l~~~~~~-----~~id~V 151 (519)
.++++|+|++ +....+++.|.+. |++++.+..+..... .......+ ..|..|.+.+.+++++ .++|++
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~-G~~Vv~~~R~~~~~~~~~~~l~~v~~~-~~Dl~d~~~v~~~~~~~~~~~~~iD~l 103 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQA-GAHVIVPARRPDVAREALAGIDGVEVV-MLDLADLESVRAFAERFLDSGRRIDIL 103 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhhhCeEE-EccCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 4689999975 4556778888877 888777653311110 00011222 5677777777666553 358888
Q ss_pred EE
Q 010065 152 VV 153 (519)
Q Consensus 152 i~ 153 (519)
+.
T Consensus 104 i~ 105 (315)
T PRK06196 104 IN 105 (315)
T ss_pred EE
Confidence 86
No 356
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.35 E-value=59 Score=31.03 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=23.9
Q ss_pred ccEEEEEeCC---hhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGG---GREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g---~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
.++++|+|++ +....+++.|.+. |++++++.
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~-G~~vi~~~ 38 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAK-GIDIFFTY 38 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHc-CCcEEEEc
Confidence 3679999975 4667788888877 88877764
No 357
>PRK08628 short chain dehydrogenase; Provisional
Probab=44.24 E-value=82 Score=29.99 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=41.6
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC-------CCCCccccCCCCCCHHHHHHHHHH-----cCC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN-------SGDATCIPDLDVLDGDAVISFCRK-----WSV 148 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-------~~~~~~v~~~d~~d~~~l~~~~~~-----~~i 148 (519)
.++++|+|++ +....++..|.+. |.+++.+..+...... ......+ ..|..+.+.+....++ .++
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~i 84 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEE-GAIPVIFGRSAPDDEFAEELRALQPRAEFV-QVDLTDDAQCRDAVEQTVAKFGRI 84 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc-CCcEEEEcCChhhHHHHHHHHhcCCceEEE-EccCCCHHHHHHHHHHHHHhcCCC
Confidence 4689999966 3556678888877 8887776533211100 0011222 5677776666555543 268
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|.|+.
T Consensus 85 d~vi~ 89 (258)
T PRK08628 85 DGLVN 89 (258)
T ss_pred CEEEE
Confidence 88886
No 358
>PRK05876 short chain dehydrogenase; Provisional
Probab=44.21 E-value=38 Score=33.06 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=42.3
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC-------C-CCCccccCCCCCCHHHHHHHHHHc-----
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN-------S-GDATCIPDLDVLDGDAVISFCRKW----- 146 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-------~-~~~~~v~~~d~~d~~~l~~~~~~~----- 146 (519)
+.+.++|+|++ +....++..|.+. |+++++++.+...... . .....+ ..|..|.+.+.+++.+.
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~-~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARR-GARVVLGDVDKPGLRQAVNHLRAEGFDVHGV-MCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE-eCCCCCHHHHHHHHHHHHHHcC
Confidence 35679999866 4556788888877 8887766432111100 0 011122 56777777776665542
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|+++.
T Consensus 83 ~id~li~ 89 (275)
T PRK05876 83 HVDVVFS 89 (275)
T ss_pred CCCEEEE
Confidence 5898887
No 359
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.20 E-value=1.6e+02 Score=23.55 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=18.8
Q ss_pred CCcEEEEC---CChhhHHHHHHHHHHCCCCee
Q 010065 147 SVGLVVVG---PEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 147 ~id~Vi~g---~E~~~~~~~a~~le~~gip~~ 175 (519)
+.|+|+.. -.......+.+.+.+.|+|++
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPII 79 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEE
Confidence 46777762 233334466777888999986
No 360
>PRK07063 short chain dehydrogenase; Provisional
Probab=44.17 E-value=58 Score=31.10 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=40.2
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC----------CCCCccccCCCCCCHHHHHHHHHH-----
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN----------SGDATCIPDLDVLDGDAVISFCRK----- 145 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----------~~~~~~v~~~d~~d~~~l~~~~~~----- 145 (519)
.++++|+|++ +....++..|.+. |.+++.++.+...... ......+ ..|..+.+.+.+++++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFARE-GAAVALADLDAALAERAAAAIARDVAGARVLAV-PADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEE-EccCCCHHHHHHHHHHHHHHh
Confidence 4689999966 3456788888877 8887776533111000 0001112 4566666655555443
Q ss_pred cCCcEEEE
Q 010065 146 WSVGLVVV 153 (519)
Q Consensus 146 ~~id~Vi~ 153 (519)
.++|.++.
T Consensus 85 g~id~li~ 92 (260)
T PRK07063 85 GPLDVLVN 92 (260)
T ss_pred CCCcEEEE
Confidence 25788876
No 361
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=44.06 E-value=1.3e+02 Score=30.58 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=47.7
Q ss_pred cEEEEEeC-ChhHHHHHHHHHhcCCCcEEEE-ecCC-CCCcCCCCCcccc-----CCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 83 VVVLVIGG-GGREHALCYALKRSHSCDAVFC-APGN-AGISNSGDATCIP-----DLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 83 ~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~-~~~~-~~~~~~~~~~~v~-----~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
++|.|+|+ |.....+++.|.+..+++.+.+ ++.. .+.........+. .++..+.+.+ . .++|+||..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~---~--~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEI---A--EDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHh---h--cCCCEEEEC
Confidence 57999998 4345667888877767777744 4332 2211100001000 1121233322 2 268999985
Q ss_pred CChhhHHHHHHHHHHCCCCee
Q 010065 155 PEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~ 175 (519)
...+....++..+...|.+++
T Consensus 76 lP~~~s~~~~~~~~~~G~~VI 96 (346)
T TIGR01850 76 LPHGVSAELAPELLAAGVKVI 96 (346)
T ss_pred CCchHHHHHHHHHHhCCCEEE
Confidence 444444456666667898887
No 362
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=43.78 E-value=52 Score=31.38 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=42.2
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CCC-CCccccCCCCCCHHHHHHHHHHc-----CCcE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NSG-DATCIPDLDVLDGDAVISFCRKW-----SVGL 150 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~~-~~~~v~~~d~~d~~~l~~~~~~~-----~id~ 150 (519)
.++++|+|++ +....++..|.+. |.+++.++.+..... ... ....+ ..|..|.+.+.+++++. ++|+
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAE-GARVVIADIKPARARLAALEIGPAAIAV-SLDVTRQDSIDRIVAAAVERFGGIDI 83 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHhCCceEEE-EccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4679999965 4556788888877 888877754321110 000 11122 46777766666655542 6888
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
++.
T Consensus 84 li~ 86 (257)
T PRK07067 84 LFN 86 (257)
T ss_pred EEE
Confidence 886
No 363
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=43.72 E-value=2.9e+02 Score=29.20 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcCCCCCcc-------cc-----CCCCCCHHHHHHHHHHcCCcEEEECCChhhHHH
Q 010065 95 HALCYALKRSHSCDAVFCAPGNAGISNSGDATC-------IP-----DLDVLDGDAVISFCRKWSVGLVVVGPEAPLVSG 162 (519)
Q Consensus 95 ~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~-------v~-----~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~~~ 162 (519)
..++..|.+. |+++.++.+............. .+ .........+..++++.++|+|...........
T Consensus 81 ~~l~~~L~~~-G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~ 159 (465)
T PLN02871 81 QNFIRYLREM-GDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSPRIISEVARFKPDLIHASSPGIMVFG 159 (465)
T ss_pred HHHHHHHHHC-CCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCCHHHHHHHHhCCCCEEEECCCchhHHH
Confidence 5677888776 9998887654211110000000 00 001111235777888899999987432222111
Q ss_pred HHHHHHHCCCCee
Q 010065 163 LANKLVKAGIPTF 175 (519)
Q Consensus 163 ~a~~le~~gip~~ 175 (519)
........|+|++
T Consensus 160 ~~~~ak~~~ip~V 172 (465)
T PLN02871 160 ALFYAKLLCVPLV 172 (465)
T ss_pred HHHHHHHhCCCEE
Confidence 1222456789876
No 364
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.71 E-value=51 Score=31.44 Aligned_cols=70 Identities=21% Similarity=0.168 Sum_probs=41.9
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCC-cCCC--CCccccCCCCCCHHHHHHHHHH-----cCCcEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGI-SNSG--DATCIPDLDVLDGDAVISFCRK-----WSVGLVV 152 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~~--~~~~v~~~d~~d~~~l~~~~~~-----~~id~Vi 152 (519)
.++++|+|++ +....+++.|.+. |.+++++...+... .... ....+ ..|..|.+.+.++.++ .++|+++
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~l~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~id~li 84 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLRE-GAKVAVLYNSAENEAKELREKGVFTI-KCDVGNRDQVKKSKEVVEKEFGRVDVLV 84 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCcHHHHHHHHhCCCeEE-EecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4789999965 4556788888877 88877654322110 0000 11222 5677777766665554 2689888
Q ss_pred E
Q 010065 153 V 153 (519)
Q Consensus 153 ~ 153 (519)
.
T Consensus 85 ~ 85 (255)
T PRK06463 85 N 85 (255)
T ss_pred E
Confidence 6
No 365
>PRK07814 short chain dehydrogenase; Provisional
Probab=43.68 E-value=51 Score=31.68 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=41.8
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC--------CCCCccccCCCCCCHHHHHHHHHH-----c
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN--------SGDATCIPDLDVLDGDAVISFCRK-----W 146 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~--------~~~~~~v~~~d~~d~~~l~~~~~~-----~ 146 (519)
+.++++|+|+++ ....+++.|.+. |++++.++.+...... ......+ ..|..+.+.+.+++++ .
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEA-GADVLIAARTESQLDEVAEQIRAAGRRAHVV-AADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE-EccCCCHHHHHHHHHHHHHHcC
Confidence 357899999774 456678888776 8887776533111000 0011112 4677777666655443 2
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|+|+-
T Consensus 87 ~id~vi~ 93 (263)
T PRK07814 87 RLDIVVN 93 (263)
T ss_pred CCCEEEE
Confidence 6898886
No 366
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=43.61 E-value=41 Score=32.07 Aligned_cols=70 Identities=24% Similarity=0.336 Sum_probs=41.7
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc-------CC-CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS-------NS-GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~-------~~-~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.+++||+|+. +....+++.|.+. |++++.+..+..... .. .....+ ..|..|.+.+.+++.+ .+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARA-GAAVAIADLNQDGANAVADEINKAGGKAIGV-AMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHHHhcCceEEEE-ECCCCCHHHHHHHHHHHHHHcCC
Confidence 4689999975 4556688888877 888776654321110 00 011122 4677777766665553 24
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+|+-
T Consensus 85 ~d~vi~ 90 (262)
T PRK13394 85 VDILVS 90 (262)
T ss_pred CCEEEE
Confidence 788876
No 367
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=43.55 E-value=52 Score=31.12 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=39.7
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCC-cC--------CCCCccccCCCCCCHHHHHHHHHH-----c
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGI-SN--------SGDATCIPDLDVLDGDAVISFCRK-----W 146 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~--------~~~~~~v~~~d~~d~~~l~~~~~~-----~ 146 (519)
+++++|+|+++ ....+++.|.+. |++++++...+... .. ......+ ..|..+.+.+.++.++ .
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAAR-GWSVGINYARDAAAAEETADAVRAAGGRACVV-AGDVANEADVIAMFDAVQSAFG 79 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEE-EeccCCHHHHHHHHHHHHHhcC
Confidence 46789999763 456678888877 88776553222110 00 0011122 4677776666555443 2
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|++|.
T Consensus 80 ~id~li~ 86 (248)
T PRK06947 80 RLDALVN 86 (248)
T ss_pred CCCEEEE
Confidence 5898886
No 368
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=43.46 E-value=35 Score=38.02 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=27.9
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
.+++|+|+|+|-....++..|++. |+++.+++.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er 112 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEK 112 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEec
Confidence 458999999997777789999987 999888864
No 369
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=43.29 E-value=74 Score=30.38 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=42.8
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc---C---C-CCCccccCCCCCCHHHHHHHHHHc-----C
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS---N---S-GDATCIPDLDVLDGDAVISFCRKW-----S 147 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~---~---~-~~~~~v~~~d~~d~~~l~~~~~~~-----~ 147 (519)
..+++||+|+++ ....+++.|.+. |+.++++..+..... . . .....+ ..|..+.+.+.+++++. +
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~i~~~~~~~~~~~g~ 91 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKA-GADIIITTHGTNWDETRRLIEKEGRKVTFV-QVDLTKPESAEKVVKEALEEFGK 91 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCcHHHHHHHHHHhcCCceEEE-EcCCCCHHHHHHHHHHHHHHcCC
Confidence 357899999763 456788888877 888877654311000 0 0 011122 56777777666655542 5
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 92 id~li~ 97 (258)
T PRK06935 92 IDILVN 97 (258)
T ss_pred CCEEEE
Confidence 888886
No 370
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=43.27 E-value=14 Score=34.06 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=17.0
Q ss_pred CCceeccCCceeEEeccCCC
Q 010065 33 NNLRFSVGPNFSISFNPQGS 52 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ 52 (519)
.+++|...|.+.||||||..
T Consensus 157 ~~~~~~~~~i~GvQfHPE~~ 176 (191)
T PRK06774 157 MGIRHRTLPLEGVQFHPESI 176 (191)
T ss_pred EEEEeCCCCEEEEEECCCcC
Confidence 46778888999999999974
No 371
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=43.01 E-value=29 Score=33.17 Aligned_cols=71 Identities=23% Similarity=0.311 Sum_probs=41.4
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CCC----CCccccCCCCCCHHHHHHHHHHc-----
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NSG----DATCIPDLDVLDGDAVISFCRKW----- 146 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~~----~~~~v~~~d~~d~~~l~~~~~~~----- 146 (519)
+.++++|+|++ +....+++.|.+. |++++..+.+..... ... ....+ ..|..|.+.+.++.++.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQA-GAEVILNGRDPAKLAAAAESLKGQGLSAHAL-AFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCceEEEE-EccCCCHHHHHHHHHHHHHhcC
Confidence 45789999975 4556788888876 888776643311100 000 01112 45777766666655432
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|+++.
T Consensus 87 ~~d~li~ 93 (255)
T PRK07523 87 PIDILVN 93 (255)
T ss_pred CCCEEEE
Confidence 4788886
No 372
>PRK12744 short chain dehydrogenase; Provisional
Probab=43.00 E-value=89 Score=29.76 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=41.2
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCC-CcC----------C-CCCccccCCCCCCHHHHHHHHHH---
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAG-ISN----------S-GDATCIPDLDVLDGDAVISFCRK--- 145 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~----------~-~~~~~v~~~d~~d~~~l~~~~~~--- 145 (519)
.++++|+|++ +....+++.|.+. |++++.+...... ... . .....+ ..|..+.+.+.+++.+
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~-G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQ-GAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAF-QADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHC-CCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEE-ecCcCCHHHHHHHHHHHHH
Confidence 4689999966 3456788888876 8886666422110 000 0 011122 5677777776665553
Q ss_pred --cCCcEEEE
Q 010065 146 --WSVGLVVV 153 (519)
Q Consensus 146 --~~id~Vi~ 153 (519)
.++|.++.
T Consensus 86 ~~~~id~li~ 95 (257)
T PRK12744 86 AFGRPDIAIN 95 (257)
T ss_pred hhCCCCEEEE
Confidence 26888886
No 373
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=42.94 E-value=63 Score=32.20 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=41.1
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CC----CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NS----GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~----~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
+++++|+|+. +....+++.|.+. |.+++++..+..... .. .....+ ..|..+.+.+.+++++ .+
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~v~~~~~~~~~~~~~ 83 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKR-GWHVIMACRNLKKAEAAAQELGIPPDSYTII-HIDLGDLDSVRRFVDDFRALGKP 83 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhccCCceEEE-EecCCCHHHHHHHHHHHHHhCCC
Confidence 5689999865 4556678888877 888777653211000 00 011122 4577777766666554 24
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|++|.
T Consensus 84 iD~li~ 89 (322)
T PRK07453 84 LDALVC 89 (322)
T ss_pred ccEEEE
Confidence 788876
No 374
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=42.90 E-value=36 Score=32.65 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=41.2
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC----CC-CCccccCCCCCCHHHHHHHHHH-----cCCc
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN----SG-DATCIPDLDVLDGDAVISFCRK-----WSVG 149 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~~-~~~~v~~~d~~d~~~l~~~~~~-----~~id 149 (519)
+.++++|+|++ +....+++.|.+. |++++.++.+...... .. ....+ ..|..+.+.+.+++++ .++|
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~g~id 82 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAE-GARVAVLERSAEKLASLRQRFGDHVLVV-EGDVTSYADNQRAVDQTVDAFGKLD 82 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCcceEE-EccCCCHHHHHHHHHHHHHhcCCCC
Confidence 34689999975 4556788888877 8887776533111100 00 11122 4577776655554443 2588
Q ss_pred EEEE
Q 010065 150 LVVV 153 (519)
Q Consensus 150 ~Vi~ 153 (519)
+++.
T Consensus 83 ~li~ 86 (263)
T PRK06200 83 CFVG 86 (263)
T ss_pred EEEE
Confidence 8886
No 375
>PRK07478 short chain dehydrogenase; Provisional
Probab=42.76 E-value=52 Score=31.33 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=40.4
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC----C----CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN----S----GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~----~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|++ +....++..|.+. |++++.+..+...... . .....+ ..|..+.+.+.+++++ .+
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFARE-GAKVVVGARRQAELDQLVAEIRAEGGEAVAL-AGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE-EcCCCCHHHHHHHHHHHHHhcCC
Confidence 4689999866 4556678888876 8887766532111000 0 011122 4577776666555543 26
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 84 id~li~ 89 (254)
T PRK07478 84 LDIAFN 89 (254)
T ss_pred CCEEEE
Confidence 888886
No 376
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.32 E-value=54 Score=30.93 Aligned_cols=70 Identities=13% Similarity=0.185 Sum_probs=40.6
Q ss_pred ccEEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCCCCCcC--------CCCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGG-GGREHALCYALKRSHSCDAVFCAPGNAGISN--------SGDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~--------~~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|+ |+....++..+.+. |..++.++.+...... ......+ ..|..+.+.+.++++. .+
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~-G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQK-GAKLALIDLNQEKLEEAVAECGALGTEVRGY-AANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEE-EcCCCCHHHHHHHHHHHHHHcCC
Confidence 468999997 55666788888876 8877766543211000 0011112 4566666555554443 25
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+||.
T Consensus 83 id~vi~ 88 (253)
T PRK08217 83 LNGLIN 88 (253)
T ss_pred CCEEEE
Confidence 898886
No 377
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.88 E-value=2.6e+02 Score=29.39 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=22.3
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCC-CcEEEEec
Q 010065 83 VVVLVIGGGGREHALCYALKRSHS-CDAVFCAP 114 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g-~~~v~~~~ 114 (519)
++|+|+|.|+.....+..|.+..| +++...|.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~ 40 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDT 40 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 689999999766666666665544 66666553
No 378
>PRK06841 short chain dehydrogenase; Provisional
Probab=41.66 E-value=44 Score=31.76 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=41.5
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc---CC--CCCccccCCCCCCHHHHHHHHHHc-----CCcE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS---NS--GDATCIPDLDVLDGDAVISFCRKW-----SVGL 150 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~---~~--~~~~~v~~~d~~d~~~l~~~~~~~-----~id~ 150 (519)
.++++|+|++ +....++..|.+. |++++.+..+..... .. .....+ ..|..+.+.+.++.++. ++|+
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~~d~ 92 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAK-GARVALLDRSEDVAEVAAQLLGGNAKGL-VCDVSDSQSVEAAVAAVISAFGRIDI 92 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhhCCceEEE-EecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4689999965 4556678888876 888776653311100 00 011122 56777777666655432 6898
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
++-
T Consensus 93 vi~ 95 (255)
T PRK06841 93 LVN 95 (255)
T ss_pred EEE
Confidence 886
No 379
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=41.64 E-value=52 Score=31.10 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=42.8
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCC-C-c---CC-CCCccccCCCCCCHHHHHHHHHH-----cCC
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAG-I-S---NS-GDATCIPDLDVLDGDAVISFCRK-----WSV 148 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~-~-~---~~-~~~~~v~~~d~~d~~~l~~~~~~-----~~i 148 (519)
+.++++|+|++ +....+++.|.+. |++++.++.+... . . .. .....+ ..|..+.+.+..++++ .++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~-G~~vi~~~r~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~~ 81 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEA-GADIVGAGRSEPSETQQQVEALGRRFLSL-TADLSDIEAIKALVDSAVEEFGHI 81 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCchHHHHHHHHHhcCCceEEE-ECCCCCHHHHHHHHHHHHHHcCCC
Confidence 35789999975 4556788888877 8887776543210 0 0 00 011222 5677777666655543 258
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|.++.
T Consensus 82 d~li~ 86 (248)
T TIGR01832 82 DILVN 86 (248)
T ss_pred CEEEE
Confidence 98886
No 380
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=41.63 E-value=44 Score=35.54 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=28.6
Q ss_pred CCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 78 NAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 78 ~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
+....++|.|||+|......++.|++. |++++++..+
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~ 42 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRRE-GHTVVVFERE 42 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecC
Confidence 344568999999997776778888877 8988887654
No 381
>PRK07904 short chain dehydrogenase; Provisional
Probab=41.61 E-value=1.2e+02 Score=29.01 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=23.8
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEec
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
+.++++|+|++ +....+++.+.+..|..++.+..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r 41 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAAL 41 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence 45789999976 35567888887763477766643
No 382
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=41.50 E-value=9.1 Score=32.91 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=22.6
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
.+++|.|||+|-....++..|.+. |+.+..+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a-g~~v~~v~ 40 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA-GHEVVGVY 40 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT-TSEEEEES
T ss_pred CccEEEEECCCHHHHHHHHHHHHC-CCeEEEEE
Confidence 468999999996555688888876 88776664
No 383
>PRK12742 oxidoreductase; Provisional
Probab=41.46 E-value=60 Score=30.40 Aligned_cols=70 Identities=30% Similarity=0.414 Sum_probs=41.5
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCC-CcCC---CCCccccCCCCCCHHHHHHHHHHc-CCcEEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAG-ISNS---GDATCIPDLDVLDGDAVISFCRKW-SVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~~---~~~~~v~~~d~~d~~~l~~~~~~~-~id~Vi~ 153 (519)
.++++|+|++ +....++..|.+. |.+++.....+.. .... .....+ ..|..|.+.+.+..++. ++|.++.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~l~~~~~~~~~-~~D~~~~~~~~~~~~~~~~id~li~ 81 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTD-GANVRFTYAGSKDAAERLAQETGATAV-QTDSADRDAVIDVVRKSGALDILVV 81 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEecCCCHHHHHHHHHHhCCeEE-ecCCCCHHHHHHHHHHhCCCcEEEE
Confidence 4689999965 4566788888776 8877654322110 0000 011222 46777777777776654 4888886
No 384
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.24 E-value=64 Score=30.49 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=40.5
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCC--c------CC-CCCccccCCCCCCHHHHHHHHHHc-----C
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGI--S------NS-GDATCIPDLDVLDGDAVISFCRKW-----S 147 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~--~------~~-~~~~~v~~~d~~d~~~l~~~~~~~-----~ 147 (519)
++++|+|+++ ....++..|.+. |++++.+...+... . .. .....+ ..|..|.+.+..+.++. +
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~-g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEE-GYDIAVNYARSRKAAEETAEEIEALGRKALAV-KANVGDVEKIKEMFAQIDEEFGR 82 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEE-EcCCCCHHHHHHHHHHHHHHcCC
Confidence 6899999764 456688888877 88776542211110 0 00 011222 46777777666655542 6
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 83 id~vi~ 88 (250)
T PRK08063 83 LDVFVN 88 (250)
T ss_pred CCEEEE
Confidence 898887
No 385
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=41.23 E-value=5e+02 Score=28.21 Aligned_cols=21 Identities=14% Similarity=0.068 Sum_probs=15.4
Q ss_pred eEEEEEEEEEcCCCceEEEEEeC
Q 010065 351 GVLYAGLMIEKKSGLPKLIEYNV 373 (519)
Q Consensus 351 G~~~vdf~~~~~g~~~~viEiN~ 373 (519)
-+..|||-++ +| ++|++-.=|
T Consensus 276 ~pqDIEfai~-~g-~L~iLQaRp 296 (530)
T PRK05878 276 DVQDIEFTVE-SG-KLWLLQTRS 296 (530)
T ss_pred CceeEEEEEE-CC-EEEEEEeec
Confidence 6788999994 44 688876544
No 386
>PRK10637 cysG siroheme synthase; Provisional
Probab=41.15 E-value=85 Score=33.34 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=22.4
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
+.++|||+|+|.....-+..|.+. |.++.++.|.
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~-ga~v~visp~ 44 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDA-GARLTVNALA 44 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 357999999996432234555555 7777777654
No 387
>PRK14852 hypothetical protein; Provisional
Probab=40.95 E-value=1.9e+02 Score=33.72 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=26.2
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
+.+|+|+|.||....++..|... |+..+.+.+
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAra-GVG~I~L~D 363 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLART-GIGNFNLAD 363 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHc-CCCeEEEEc
Confidence 56899999998887889999887 887776643
No 388
>PRK08643 acetoin reductase; Validated
Probab=40.93 E-value=59 Score=30.92 Aligned_cols=69 Identities=25% Similarity=0.296 Sum_probs=40.1
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc----CC----CCCccccCCCCCCHHHHHHHHHH-----cCC
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS----NS----GDATCIPDLDVLDGDAVISFCRK-----WSV 148 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~----~~~~~v~~~d~~d~~~l~~~~~~-----~~i 148 (519)
++++|+|+.+ ....++..|.+. |++++.++.+..... .. .....+ ..|..+.+.+.+++++ .++
T Consensus 3 k~~lItGas~giG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVED-GFKVAIVDYNEETAQAAADKLSKDGGKAIAV-KADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE-ECCCCCHHHHHHHHHHHHHHcCCC
Confidence 5788888663 456678888877 888777653311100 00 011112 4677777666655543 258
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|+++.
T Consensus 81 d~vi~ 85 (256)
T PRK08643 81 NVVVN 85 (256)
T ss_pred CEEEE
Confidence 98886
No 389
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=40.80 E-value=1.3e+02 Score=30.73 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=22.8
Q ss_pred cEEEEEeCChh-----HHHHHHHHHhcCCCcEEEEec
Q 010065 83 VVVLVIGGGGR-----EHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 83 ~~vliiG~g~~-----~~~l~~~l~~~~g~~~v~~~~ 114 (519)
++|++.|+|.- ..++++.|++. |+++.++..
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~-g~~v~~vg~ 37 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED-NWDISYIGS 37 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEEC
Confidence 57888887743 36788888875 898888753
No 390
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=40.79 E-value=98 Score=30.27 Aligned_cols=67 Identities=22% Similarity=0.197 Sum_probs=38.1
Q ss_pred EEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecCCCCCcCC-CCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 84 VVLVIGG-GGREHALCYALKRSHSCDAVFCAPGNAGISNS-GDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 84 ~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
+|||+|+ |.....++..|.+. |++++.++......... .....+ ..|..+.+.+.+.+.... |+|+.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~-d~vih 70 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDGLDPLLSGVEFV-VLDLTDRDLVDELAKGVP-DAVIH 70 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCCcccccccccccee-eecccchHHHHHHHhcCC-CEEEE
Confidence 4999996 54556788888877 89998887442221111 011122 334444444444444433 88886
No 391
>PRK06701 short chain dehydrogenase; Provisional
Probab=40.77 E-value=1.1e+02 Score=29.90 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=40.4
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCC-Cc----CC----CCCccccCCCCCCHHHHHHHHHH-----c
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAG-IS----NS----GDATCIPDLDVLDGDAVISFCRK-----W 146 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~----~~----~~~~~v~~~d~~d~~~l~~~~~~-----~ 146 (519)
.++++|+|++ +....++..+.+. |.+++++...... .. .. .....+ ..|..+.+.+.+++++ .
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~-G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKE-GADIAIVYLDEHEDANETKQRVEKEGVKCLLI-PGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEE-EccCCCHHHHHHHHHHHHHHcC
Confidence 4689999965 3556678888877 8887776433111 00 00 011122 4677776666555543 2
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|+++.
T Consensus 124 ~iD~lI~ 130 (290)
T PRK06701 124 RLDILVN 130 (290)
T ss_pred CCCEEEE
Confidence 5788875
No 392
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=40.75 E-value=58 Score=31.04 Aligned_cols=71 Identities=11% Similarity=0.197 Sum_probs=41.7
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCC--------CCCccccCCCCCCHHHHHHHHHH-----c
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNS--------GDATCIPDLDVLDGDAVISFCRK-----W 146 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--------~~~~~v~~~d~~d~~~l~~~~~~-----~ 146 (519)
+.++++|+|+++ ....+++.|.+. |.+++.++......... .....+ ..|..+.+.+.++++. .
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~-G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINADAANHVVDEIQQLGGQAFAC-RCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEE-EccCCCHHHHHHHHHHHHHHcC
Confidence 357899999763 456678888877 88877665332111000 011112 4677777666665543 2
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|+++.
T Consensus 88 ~~d~li~ 94 (255)
T PRK06113 88 KVDILVN 94 (255)
T ss_pred CCCEEEE
Confidence 5788876
No 393
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=40.71 E-value=67 Score=30.25 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=40.9
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc----CC----CCCccccCCCCCCHHHHHHHHHHc-----C
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS----NS----GDATCIPDLDVLDGDAVISFCRKW-----S 147 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~----~~~~~v~~~d~~d~~~l~~~~~~~-----~ 147 (519)
.++++|+|+++ ....++..|.+. |++++.++.+..... .. .....+ ..|..|.+.+.++.++. +
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD-GAEVIVVDICGDDAAATAELVEAAGGKARAR-QVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE-ECCCCCHHHHHHHHHHHHHHhCC
Confidence 46899999664 456678888777 887776653311000 00 011112 45777777766665542 6
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+|+.
T Consensus 84 ~d~vi~ 89 (251)
T PRK12826 84 LDILVA 89 (251)
T ss_pred CCEEEE
Confidence 888886
No 394
>PRK06847 hypothetical protein; Provisional
Probab=40.64 E-value=46 Score=33.94 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=26.4
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
++++|+|+|+|.....++..|++. |+++++++.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~ 35 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEI 35 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-CCCEEEEec
Confidence 467899999997666778888876 999887753
No 395
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.63 E-value=2.2e+02 Score=30.18 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=23.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
.++|+|+|.|-...+.++.|+ . |.++++.|
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~-g~~v~v~D 35 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-N-KYDVIVYD 35 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-C-CCEEEEEC
Confidence 468999999966667778777 5 88877665
No 396
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=40.63 E-value=43 Score=33.83 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=18.2
Q ss_pred EEEEEEEEEcCCCceEEEEEeCCCCCC
Q 010065 352 VLYAGLMIEKKSGLPKLIEYNVRFGDP 378 (519)
Q Consensus 352 ~~~vdf~~~~~g~~~~viEiN~R~G~~ 378 (519)
++.+|+..+++| +++|||.|+|.+++
T Consensus 70 ~~g~Dl~r~~dG-~w~VleDn~~~PsG 95 (330)
T PF04174_consen 70 FYGADLVRDPDG-RWRVLEDNTRAPSG 95 (330)
T ss_dssp EEEEEEEE-SSS--EEEEEEE-SS---
T ss_pred EEEEeeeECCCC-CEEEEEecCCCCcH
Confidence 566999999998 99999999997544
No 397
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=40.51 E-value=91 Score=32.78 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=25.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
++.|+|+|+|......+..+.+. |.++++++.+
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~-g~~v~vi~~~ 34 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEA-GKRVALVAKG 34 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCcEEEEECC
Confidence 35799999997666677888777 8999888754
No 398
>PRK08017 oxidoreductase; Provisional
Probab=40.35 E-value=61 Score=30.74 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=23.5
Q ss_pred cEEEEEeC-ChhHHHHHHHHHhcCCCcEEEEec
Q 010065 83 VVVLVIGG-GGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 83 ~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
++++|+|+ |+....+++.|.+. |++++.+..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR-GYRVLAACR 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-CCEEEEEeC
Confidence 47999997 55667788888877 888776653
No 399
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=40.33 E-value=50 Score=31.66 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=39.9
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC----C-CCCccccCCCCCCHHHHHHHHHH-----cCCcE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN----S-GDATCIPDLDVLDGDAVISFCRK-----WSVGL 150 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~-~~~~~v~~~d~~d~~~l~~~~~~-----~~id~ 150 (519)
.++++|+|++ +....+++.|.+. |.+++.++.+...... . .....+ ..|..+.+.+.+.+++ .++|.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~l~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~g~id~ 82 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAE-GARVAVLDKSAAGLQELEAAHGDAVVGV-EGDVRSLDDHKEAVARCVAAFGKIDC 82 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhhcCCceEEE-EeccCCHHHHHHHHHHHHHHhCCCCE
Confidence 4789999975 4556788888877 8988776533211000 0 011112 4566665555544433 25787
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
++.
T Consensus 83 li~ 85 (262)
T TIGR03325 83 LIP 85 (262)
T ss_pred EEE
Confidence 776
No 400
>PRK07074 short chain dehydrogenase; Provisional
Probab=40.04 E-value=43 Score=31.96 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=40.8
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CC--CCCccccCCCCCCHHHHHHHHHHc-----CCcE
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NS--GDATCIPDLDVLDGDAVISFCRKW-----SVGL 150 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~--~~~~~v~~~d~~d~~~l~~~~~~~-----~id~ 150 (519)
++++|+|++ +....++..|.+. |.+++.++.+..... .. .....+ ..|..|.+.+.....+. ++|.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAA-GDRVLALDIDAAALAAFADALGDARFVPV-ACDLTDAASLAAALANAAAERGPVDV 80 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcCCceEEE-EecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 578999875 3456678888776 888776653311100 00 011122 56777777766555442 5898
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
++.
T Consensus 81 vi~ 83 (257)
T PRK07074 81 LVA 83 (257)
T ss_pred EEE
Confidence 887
No 401
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.93 E-value=75 Score=33.36 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=52.7
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC---CCCC----cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG---NAGI----SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~---~~~~----~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
..+++.|.|++.....++..+. +.|.+++.+... +... .... ...+ .++..|...+.+++++.++|.+|.
T Consensus 299 ~Gkrv~i~~g~~~~~~~~~~l~-elGmevv~~g~~~~~~~~~~~~~~~~~-~~~~-i~~~~d~~e~~~~i~~~~pDliig 375 (421)
T cd01976 299 EGKTVMLYVGGLRPRHYIGAYE-DLGMEVVGTGYEFAHRDDYERTEVIPK-EGTL-LYDDVTHYELEEFVKRLKPDLIGS 375 (421)
T ss_pred CCCEEEEECCCCcHHHHHHHHH-HCCCEEEEEEeecCCHHHHhhHHhhcC-CceE-EEcCCCHHHHHHHHHHhCCCEEEe
Confidence 3578988887665555666554 459998875321 1100 0011 1111 245567888899999999999997
Q ss_pred CCChhhHHHHHHHHHHCCCCee
Q 010065 154 GPEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 154 g~E~~~~~~~a~~le~~gip~~ 175 (519)
+.-... + .+++|+|+.
T Consensus 376 ~~~~~~---~---a~k~giP~~ 391 (421)
T cd01976 376 GIKEKY---V---FQKMGIPFR 391 (421)
T ss_pred cCcchh---h---hhhcCCCeE
Confidence 644321 2 667899973
No 402
>PRK06197 short chain dehydrogenase; Provisional
Probab=39.85 E-value=55 Score=32.33 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=40.8
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----C------CCCCccccCCCCCCHHHHHHHHHHc----
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----N------SGDATCIPDLDVLDGDAVISFCRKW---- 146 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~------~~~~~~v~~~d~~d~~~l~~~~~~~---- 146 (519)
.++++|+|+. +....+++.|.+. |++++.+..+..... . ......+ ..|..|.+.+.+++++.
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~-G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAK-GAHVVLAVRNLDKGKAAAARITAATPGADVTLQ-ELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEE-ECCCCCHHHHHHHHHHHHhhC
Confidence 4689999965 4556788888877 888776643311000 0 0011122 46777766666655532
Q ss_pred -CCcEEEE
Q 010065 147 -SVGLVVV 153 (519)
Q Consensus 147 -~id~Vi~ 153 (519)
++|++|.
T Consensus 94 ~~iD~li~ 101 (306)
T PRK06197 94 PRIDLLIN 101 (306)
T ss_pred CCCCEEEE
Confidence 5788776
No 403
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=39.62 E-value=74 Score=30.26 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=41.4
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CC----CCCccccCCCCCCHHHHHHHHHH-----c
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NS----GDATCIPDLDVLDGDAVISFCRK-----W 146 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~----~~~~~v~~~d~~d~~~l~~~~~~-----~ 146 (519)
+.+++||+|++ +....++..|.+. |.++++.+.+..... .. .....+ ..|..|.+.+.+++.. .
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~-G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEY-GAEIIINDITAERAELAVAKLRQEGIKAHAA-PFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE-ecCCCCHHHHHHHHHHHHHhcC
Confidence 34689999966 3556788888877 888777653311100 00 011112 4677776666655443 2
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|+++.
T Consensus 86 ~id~vi~ 92 (254)
T PRK08085 86 PIDVLIN 92 (254)
T ss_pred CCCEEEE
Confidence 5888887
No 404
>PRK07024 short chain dehydrogenase; Provisional
Probab=39.51 E-value=46 Score=31.81 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=41.8
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CCC---CCccccCCCCCCHHHHHHHHHH-----cCCc
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NSG---DATCIPDLDVLDGDAVISFCRK-----WSVG 149 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~~---~~~~v~~~d~~d~~~l~~~~~~-----~~id 149 (519)
++++|+|++ +....++..|.+. |.++++++.+..... ... ....+ ..|..+.+.+.+..++ ..+|
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQ-GATLGLVARRTDALQAFAARLPKAARVSVY-AADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcccCCeeEEE-EcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 679999865 4556788888877 888777653311100 000 11223 5677787777665543 2489
Q ss_pred EEEE
Q 010065 150 LVVV 153 (519)
Q Consensus 150 ~Vi~ 153 (519)
+++.
T Consensus 81 ~lv~ 84 (257)
T PRK07024 81 VVIA 84 (257)
T ss_pred EEEE
Confidence 8887
No 405
>PRK06180 short chain dehydrogenase; Provisional
Probab=39.31 E-value=58 Score=31.60 Aligned_cols=70 Identities=23% Similarity=0.145 Sum_probs=41.2
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC----C-CCCccccCCCCCCHHHHHHHHHH-----cCCcE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN----S-GDATCIPDLDVLDGDAVISFCRK-----WSVGL 150 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~-~~~~~v~~~d~~d~~~l~~~~~~-----~~id~ 150 (519)
.++++|+|++ +....+++.|.+. |.+++.++.+...... . .....+ ..|..|.+.+.++.+. .++|+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~l~~~~~~~~~~~-~~D~~d~~~~~~~~~~~~~~~~~~d~ 81 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA-GHRVVGTVRSEAARADFEALHPDRALAR-LLDVTDFDAIDAVVADAEATFGPIDV 81 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC-cCEEEEEeCCHHHHHHHHhhcCCCeeEE-EccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4679999975 3556678888776 8887776532111000 0 011122 4577777666665543 25888
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
|+.
T Consensus 82 vv~ 84 (277)
T PRK06180 82 LVN 84 (277)
T ss_pred EEE
Confidence 886
No 406
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=39.26 E-value=76 Score=30.33 Aligned_cols=71 Identities=15% Similarity=0.279 Sum_probs=40.6
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCC-cC--------CCCCccccCCCCCCHHHHHHHHHH-----
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGI-SN--------SGDATCIPDLDVLDGDAVISFCRK----- 145 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~--------~~~~~~v~~~d~~d~~~l~~~~~~----- 145 (519)
+.++++|+|+++ ....+++.|.+. |+.+++....+... .. ......+ ..|..|.+.+.++.+.
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~-G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~i~~~~~~~~~~~ 83 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKE-KAKVVINYRSDEEEANDVAEEIKKAGGEAIAV-KGDVTVESDVVNLIQTAVKEF 83 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEE-EecCCCHHHHHHHHHHHHHHc
Confidence 347899999764 456678888877 88776654322110 00 0001112 4577776666655543
Q ss_pred cCCcEEEE
Q 010065 146 WSVGLVVV 153 (519)
Q Consensus 146 ~~id~Vi~ 153 (519)
-++|+++.
T Consensus 84 g~id~lv~ 91 (261)
T PRK08936 84 GTLDVMIN 91 (261)
T ss_pred CCCCEEEE
Confidence 25788876
No 407
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.25 E-value=65 Score=30.47 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=40.4
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCC-cC----C-CCCccccCCCCCCHHHHHHHHHHc------C
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGI-SN----S-GDATCIPDLDVLDGDAVISFCRKW------S 147 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~----~-~~~~~v~~~d~~d~~~l~~~~~~~------~ 147 (519)
+.++++|+|++ +....++..|.+. |++++.+....... .. . .....+ ..|..+.+.+.+++++. +
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~g~~ 81 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFARE-GARVVVNYHQSEDAAEALADELGDRAIAL-QADVTDREQVQAMFATATEHFGKP 81 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHhCCceEEE-EcCCCCHHHHHHHHHHHHHHhCCC
Confidence 34689999966 4556678888776 88876653221110 00 0 011122 45777766666655442 2
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 82 id~li~ 87 (253)
T PRK08642 82 ITTVVN 87 (253)
T ss_pred CeEEEE
Confidence 888886
No 408
>PRK07576 short chain dehydrogenase; Provisional
Probab=39.24 E-value=63 Score=31.14 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=40.8
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CC----CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NS----GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~----~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|++ +....++..|.+. |.+++.++.+..... .. .....+ ..|..+.+.+.+++++ .+
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARA-GANVAVASRSQEKVDAAVAQLQQAGPEGLGV-SADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCceEEE-ECCCCCHHHHHHHHHHHHHHcCC
Confidence 4689999975 4556678888766 888777753311100 00 011112 4577776666555544 25
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 87 iD~vi~ 92 (264)
T PRK07576 87 IDVLVS 92 (264)
T ss_pred CCEEEE
Confidence 888886
No 409
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.12 E-value=2.5e+02 Score=29.60 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=23.6
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
+|+|+|.|+.....++.|.+. |+++...+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~-G~~V~~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ-GWEVVVSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCEEEEECC
Confidence 689999997766678888776 998777653
No 410
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=39.06 E-value=97 Score=29.01 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=40.5
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCC-CcC--------CCCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAG-ISN--------SGDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~-~~~--------~~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
++++|+|++ +....++..|.+. |..++.++.+... ... ......+ ..|..+.+.+.+.+++ .+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLND-GYRVIATYFSGNDCAKDWFEEYGFTEDQVRLK-ELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCcHHHHHHHHHHhhccCCeEEEE-EcCCCCHHHHHHHHHHHHHHcCC
Confidence 578899865 3456688888877 8887776543210 000 0011122 5677776666655543 25
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 81 id~vi~ 86 (245)
T PRK12824 81 VDILVN 86 (245)
T ss_pred CCEEEE
Confidence 898887
No 411
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=39.06 E-value=85 Score=31.03 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=38.0
Q ss_pred cEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc---C---C----CCCccccCCCCCCHHHHHHHHHHcCCcEE
Q 010065 83 VVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS---N---S----GDATCIPDLDVLDGDAVISFCRKWSVGLV 151 (519)
Q Consensus 83 ~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~---~---~----~~~~~v~~~d~~d~~~l~~~~~~~~id~V 151 (519)
++|||+|+.| ....+++.|.+. |++++.+..+..... . . .....+ ..|..|.+.+.++.+ ++|.|
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~--~~d~V 80 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR-GYTVKATVRDPNDPKKTEHLLALDGAKERLHLF-KANLLEEGSFDSVVD--GCEGV 80 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC-CCEEEEEEcCCCchhhHHHHHhccCCCCceEEE-eccccCcchHHHHHc--CCCEE
Confidence 7899999754 455678888877 888766543321100 0 0 011122 346656555555544 57888
Q ss_pred EE
Q 010065 152 VV 153 (519)
Q Consensus 152 i~ 153 (519)
|-
T Consensus 81 ih 82 (322)
T PLN02662 81 FH 82 (322)
T ss_pred EE
Confidence 75
No 412
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=38.96 E-value=1.1e+02 Score=28.57 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=40.7
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC-------C-CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN-------S-GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-------~-~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|+. +....+++.+.+. |++++.+..+...... . .....+ ..|..|.+.+.+..++ .+
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAAD-GAKVVIYDSNEEAAEALAAELRAAGGEARVL-VFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHHHHhcCCceEEE-EccCCCHHHHHHHHHHHHHHhCC
Confidence 3689999975 3556788888876 8887666533211000 0 011122 3577776666555443 35
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+|+.
T Consensus 83 id~vi~ 88 (246)
T PRK05653 83 LDILVN 88 (246)
T ss_pred CCEEEE
Confidence 788887
No 413
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=38.92 E-value=2.6e+02 Score=24.23 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCcEEEE----CCChhhHHHHHHHHHHCCC---Ce-eCCcHHHHHHhcCHHHHHHHHHHcCCC
Q 010065 136 GDAVISFCRKWSVGLVVV----GPEAPLVSGLANKLVKAGI---PT-FGPSSEAAALEGSKNFMKNLCDKYGIP 201 (519)
Q Consensus 136 ~~~l~~~~~~~~id~Vi~----g~E~~~~~~~a~~le~~gi---p~-~g~~~~~~~~~~dK~~~k~~l~~~Gi~ 201 (519)
++.+++.++++++|+|-. +.-...+..+.+.|++.|+ ++ +|..+-. --.|....++.|++.|+.
T Consensus 41 ~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi--~~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 41 QEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVV--GKQDFPDVEKRFKEMGFD 112 (134)
T ss_pred HHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCc--ChhhhHHHHHHHHHcCCC
Confidence 578899999999998876 2222234556677777764 34 3322110 012333345668888864
No 414
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=38.80 E-value=1.4e+02 Score=32.88 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=48.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEE-EEecCCCCCc------------CCCCCccccCCCCCCHHHHHHHHHHcCC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAV-FCAPGNAGIS------------NSGDATCIPDLDVLDGDAVISFCRKWSV 148 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v-~~~~~~~~~~------------~~~~~~~v~~~d~~d~~~l~~~~~~~~i 148 (519)
.-||+|+|.|+....++..|.+. |+..+ .++.+..... ..+..-.+..++....+.+.+.. .+.
T Consensus 129 ~akVlVlG~Gg~~s~lv~sL~~s-G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~--~~~ 205 (637)
T TIGR03693 129 NAKILAAGSGDFLTKLVRSLIDS-GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAF--EPA 205 (637)
T ss_pred cccEEEEecCchHHHHHHHHHhc-CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhh--cCC
Confidence 35899999998777788888877 88776 4443322110 00111111122333345555555 467
Q ss_pred cEEEECCChhh---HHHHHHHHHHCC
Q 010065 149 GLVVVGPEAPL---VSGLANKLVKAG 171 (519)
Q Consensus 149 d~Vi~g~E~~~---~~~~a~~le~~g 171 (519)
|.|+...+++. +..+.+.+.+.|
T Consensus 206 DiVi~vsDdy~~~~Lr~lN~acvkeg 231 (637)
T TIGR03693 206 DWVLYVSDNGDIDDLHALHAFCKEEG 231 (637)
T ss_pred cEEEEECCCCChHHHHHHHHHHHHcC
Confidence 88888554433 333444555666
No 415
>PRK06128 oxidoreductase; Provisional
Probab=38.74 E-value=1.1e+02 Score=30.20 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=40.0
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCC--Cc----CC----CCCccccCCCCCCHHHHHHHHHH-----
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAG--IS----NS----GDATCIPDLDVLDGDAVISFCRK----- 145 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~--~~----~~----~~~~~v~~~d~~d~~~l~~~~~~----- 145 (519)
.+++||+|++ +....++..|.+. |+++++....... .. .. .....+ ..|..+.+.+.+++++
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~-G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFARE-GADIALNYLPEEEQDAAEVVQLIQAEGRKAVAL-PGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHc-CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEE-ecCCCCHHHHHHHHHHHHHHh
Confidence 4789999975 4556788888877 8887665321110 00 00 011112 4577776666555543
Q ss_pred cCCcEEEE
Q 010065 146 WSVGLVVV 153 (519)
Q Consensus 146 ~~id~Vi~ 153 (519)
.++|++|.
T Consensus 133 g~iD~lV~ 140 (300)
T PRK06128 133 GGLDILVN 140 (300)
T ss_pred CCCCEEEE
Confidence 25888876
No 416
>PLN02214 cinnamoyl-CoA reductase
Probab=38.65 E-value=95 Score=31.35 Aligned_cols=69 Identities=14% Similarity=0.024 Sum_probs=40.7
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc-----CC----CCCccccCCCCCCHHHHHHHHHHcCCcE
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS-----NS----GDATCIPDLDVLDGDAVISFCRKWSVGL 150 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~-----~~----~~~~~v~~~d~~d~~~l~~~~~~~~id~ 150 (519)
.+++|+|+|+.| ....++..|.+. |++++.+........ .. .....+ ..|..|.+.+.+.++ ++|.
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~--~~d~ 84 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLER-GYTVKGTVRNPDDPKNTHLRELEGGKERLILC-KADLQDYEALKAAID--GCDG 84 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEE-ecCcCChHHHHHHHh--cCCE
Confidence 357899999853 456678888877 888776643211100 00 011122 457677666666554 4788
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
||-
T Consensus 85 Vih 87 (342)
T PLN02214 85 VFH 87 (342)
T ss_pred EEE
Confidence 886
No 417
>PRK03673 hypothetical protein; Provisional
Probab=38.59 E-value=4.8e+02 Score=27.20 Aligned_cols=50 Identities=18% Similarity=0.097 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHH--cCCcEEEE-C----CC-hhhHHHHHHHHHHCCCCeeCCcHHHHHHhcC
Q 010065 134 LDGDAVISFCRK--WSVGLVVV-G----PE-APLVSGLANKLVKAGIPTFGPSSEAAALEGS 187 (519)
Q Consensus 134 ~d~~~l~~~~~~--~~id~Vi~-g----~E-~~~~~~~a~~le~~gip~~g~~~~~~~~~~d 187 (519)
+|.+.|.+.+++ .+.|.||. | ++ |-..+.+ .+.+|.|+. .+++..+....
T Consensus 45 D~~~~i~~~l~~a~~~~DlVI~tGGlGpt~dD~t~~av---A~a~g~~L~-~d~e~~~~i~~ 102 (396)
T PRK03673 45 DNLDALVAILRERSQHADVLIVNGGLGPTSDDLSALAA---ATAAGEGLV-LHEEWLAEMER 102 (396)
T ss_pred CCHHHHHHHHHHHhccCCEEEEcCCCCCCCcccHHHHH---HHHcCCCce-eCHHHHHHHHH
Confidence 344555555443 35798887 2 34 4433334 667899987 67777665433
No 418
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.53 E-value=3.5e+02 Score=26.18 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=56.8
Q ss_pred CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCEEEEeCCCCC
Q 010065 155 PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPNAAKQYIQEEGAPIVVKADGLAA 234 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~~~~~~~~~~g~P~VvKP~~g~g 234 (519)
+++++ ..+.+..++.|+|++. + .+|......+.+...+-........+.+ +.+.+.+.+-|+++|-
T Consensus 64 G~~gl-~~L~~~~~~~Gl~~~T-e------v~d~~~v~~~~e~vdilqIgs~~~~n~~-LL~~va~tgkPVilk~----- 129 (250)
T PRK13397 64 GLQGI-RYLHEVCQEFGLLSVS-E------IMSERQLEEAYDYLDVIQVGARNMQNFE-FLKTLSHIDKPILFKR----- 129 (250)
T ss_pred CHHHH-HHHHHHHHHcCCCEEE-e------eCCHHHHHHHHhcCCEEEECcccccCHH-HHHHHHccCCeEEEeC-----
Confidence 44443 4567788899999972 2 2344444333332222222333444544 5555667799999994
Q ss_pred CCcEEEeCCHHHHHHHHHHHHhhccCCCCCCcEEEEeccCC
Q 010065 235 GKGVIVAMTLEEAYEAVDSMLLKNAFGSAGCRVIIEEFLEG 275 (519)
Q Consensus 235 s~GV~~v~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~I~G 275 (519)
|.. .+.+|+..+++.+... ...+-+|.|+-+.+
T Consensus 130 --G~~--~t~~e~~~A~e~i~~~----Gn~~i~L~eRg~~~ 162 (250)
T PRK13397 130 --GLM--ATIEEYLGALSYLQDT----GKSNIILCERGVRG 162 (250)
T ss_pred --CCC--CCHHHHHHHHHHHHHc----CCCeEEEEccccCC
Confidence 221 5789999999988643 11234455546655
No 419
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=38.53 E-value=26 Score=26.83 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.1
Q ss_pred EEEEecCCHHHHHHHHHHHhhc
Q 010065 472 GVTAKGKDVEEAQDRAYLAVEE 493 (519)
Q Consensus 472 ~vi~~g~t~~ea~~~a~~~~~~ 493 (519)
.+.+.|+|.+||++++.+++..
T Consensus 25 gc~s~G~T~eea~~n~~eai~l 46 (73)
T COG1598 25 GCHSQGETLEEALQNAKEAIEL 46 (73)
T ss_pred CccccCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999874
No 420
>PRK06114 short chain dehydrogenase; Provisional
Probab=38.52 E-value=1.4e+02 Score=28.43 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=40.8
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCC-CCcC--------CCCCccccCCCCCCHHHHHHHHHH-----c
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNA-GISN--------SGDATCIPDLDVLDGDAVISFCRK-----W 146 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~-~~~~--------~~~~~~v~~~d~~d~~~l~~~~~~-----~ 146 (519)
.++++|+|++ +....++..|.+. |++++.++.... .... ......+ ..|..|.+.+.++.++ .
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~i~~~~~~~~~~~g 85 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQA-GADVALFDLRTDDGLAETAEHIEAAGRRAIQI-AADVTSKADLRAAVARTEAELG 85 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHhcCCceEEE-EcCCCCHHHHHHHHHHHHHHcC
Confidence 4688899866 3456788888877 888877654321 1000 0011122 4577776666555443 2
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|.++.
T Consensus 86 ~id~li~ 92 (254)
T PRK06114 86 ALTLAVN 92 (254)
T ss_pred CCCEEEE
Confidence 4788886
No 421
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.49 E-value=52 Score=30.96 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=40.8
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC----C---C-CCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN----S---G-DATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~---~-~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|+++ ....++..|.+. |++++++..+...... . . ....+ ..|..+.+.+.++.++ .+
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKE-GVNVGLLARTEENLKAVAEEVEAYGVKVVIA-TADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCeEEEE-ECCCCCHHHHHHHHHHHHHHcCC
Confidence 46799999663 456678888766 8887776533111000 0 0 01112 4677777766666553 26
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|++|.
T Consensus 85 id~vi~ 90 (239)
T PRK07666 85 IDILIN 90 (239)
T ss_pred ccEEEE
Confidence 888886
No 422
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=38.41 E-value=52 Score=31.45 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=41.1
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc-------CC-CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS-------NS-GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~-------~~-~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|+. +....++..|.+. |++++.++.+..... .. .....+ ..|..|.+.+.+++.+ .+
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~-~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEA-GARVVLSARKAEELEEAAAHLEALGIDALWI-AADVADEADIERLAEETLERFGH 89 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE-EccCCCHHHHHHHHHHHHHHhCC
Confidence 4789999965 3556688888776 888776653211000 00 011122 5677777766554443 36
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+|+.
T Consensus 90 id~vi~ 95 (259)
T PRK08213 90 VDILVN 95 (259)
T ss_pred CCEEEE
Confidence 888886
No 423
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.24 E-value=1e+02 Score=29.46 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=23.5
Q ss_pred ccEEEEEeCC---hhHHHHHHHHHhcCCCcEEEEec
Q 010065 82 RVVVLVIGGG---GREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 82 ~~~vliiG~g---~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
.+.++|+|++ +...++++.|.+. |.++++.+.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~-G~~v~l~~r 44 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRAL-GAELAVTYL 44 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHc-CCEEEEEeC
Confidence 4678888864 5667788888877 888766543
No 424
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=38.22 E-value=70 Score=33.68 Aligned_cols=90 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCC---CccccCCCCCCHHHHHHHHHHcCCcEEEE-CCChh
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGD---ATCIPDLDVLDGDAVISFCRKWSVGLVVV-GPEAP 158 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~---~~~v~~~d~~d~~~l~~~~~~~~id~Vi~-g~E~~ 158 (519)
|+|+|+|.|.....++..|.+. |+++++++.+......... ...+ ..|..+.+.+.+ +.-.+.|.|+. ..++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~~~~~~~~~~~~~~~~-~gd~~~~~~l~~-~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDEERLRRLQDRLDVRTV-VGNGSSPDVLRE-AGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHhhcCEEEE-EeCCCCHHHHHH-cCCCcCCEEEEecCChH
Q ss_pred hHHHHHHHHHHC-CCCee
Q 010065 159 LVSGLANKLVKA-GIPTF 175 (519)
Q Consensus 159 ~~~~~a~~le~~-gip~~ 175 (519)
....++..+..+ +.+.+
T Consensus 78 ~n~~~~~~~r~~~~~~~i 95 (453)
T PRK09496 78 TNMVACQIAKSLFGAPTT 95 (453)
T ss_pred HHHHHHHHHHHhcCCCeE
No 425
>PRK12743 oxidoreductase; Provisional
Probab=38.20 E-value=1.1e+02 Score=29.04 Aligned_cols=70 Identities=17% Similarity=0.072 Sum_probs=40.8
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCC-c----C---C-CCCccccCCCCCCHHHHHHHHHH-----c
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGI-S----N---S-GDATCIPDLDVLDGDAVISFCRK-----W 146 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~----~---~-~~~~~v~~~d~~d~~~l~~~~~~-----~ 146 (519)
.++++|+|++ +....+++.|.+. |+.++.+...+... . . . .....+ ..|..+.+.+.+++.+ .
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQ-GFDIGITWHSDEEGAKETAEEVRSHGVRAEIR-QLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHhcCCceEEE-EccCCCHHHHHHHHHHHHHHcC
Confidence 3578999976 3556788888877 88887664322110 0 0 0 011122 4677776666555443 2
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|+++.
T Consensus 80 ~id~li~ 86 (256)
T PRK12743 80 RIDVLVN 86 (256)
T ss_pred CCCEEEE
Confidence 5888886
No 426
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=38.13 E-value=2.9e+02 Score=28.34 Aligned_cols=109 Identities=10% Similarity=0.115 Sum_probs=55.6
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
...+|+|.=|||....++..+.++.|++++.+.-++... ..+..+.+.+.++|++.++...+...++.+.
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~~G~~V~~v~~~~~~~----------~~~~~d~~~a~~va~~LgIp~~vvd~~~~f~ 73 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEF----------NGSTEYLEDARALAERLGIGHITYDARKVFR 73 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHcCCeEEEEEEecCCC----------CCChHHHHHHHHHHHHhCCCEEEEecHHHHH
Confidence 346788888887654444444444588877664322100 0122346677888999998877764332222
Q ss_pred HHHHHHHHHCCCCeeCCcHHHHHHhcCHH---HHHHHHHHcCCC
Q 010065 161 SGLANKLVKAGIPTFGPSSEAAALEGSKN---FMKNLCDKYGIP 201 (519)
Q Consensus 161 ~~~a~~le~~gip~~g~~~~~~~~~~dK~---~~k~~l~~~Gi~ 201 (519)
..+.+.+...-.. |..+.....|.... .+.+++++.|..
T Consensus 74 ~~v~~~f~~~y~~--g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~ 115 (360)
T PRK14665 74 KQIIDYFIDEYMS--GHTPVPCTLCNNYLKWPLLAKIADEMGIF 115 (360)
T ss_pred HHHHhhhhhHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 1221111111111 34444455555533 344555666654
No 427
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=38.04 E-value=1.4e+02 Score=25.97 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=25.6
Q ss_pred ccEEEEEeCChh----HHHHHHHHHhcCCCcEEEEecC
Q 010065 82 RVVVLVIGGGGR----EHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 82 ~~~vliiG~g~~----~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
.++|.++|.+.. .+.+...|.+. ||+++-++|.
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~-GY~ViPVNP~ 52 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQK-GYRVIPVNPK 52 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHC-CCEEEeeCcc
Confidence 578999998742 46678888877 9999988774
No 428
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=38.01 E-value=49 Score=30.16 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=23.5
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
+|.|+|+|.....++..+... |+++++++.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 689999997777788888777 9999887543
No 429
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.82 E-value=1.9e+02 Score=30.36 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=25.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
.++++|+|.|+....+++.|++. |+.++..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~ 36 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKN-GAEVAAYDA 36 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 46899999997777778888877 888776653
No 430
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=37.81 E-value=54 Score=30.56 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=24.4
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
+.++|+|+|+|......+..|.+. |.+++++++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 357999999996555556677665 7777777543
No 431
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=37.75 E-value=83 Score=30.00 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=41.4
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCC-C-cC---C-CCCccccCCCCCCHHHHHHHHHH-----cCCc
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAG-I-SN---S-GDATCIPDLDVLDGDAVISFCRK-----WSVG 149 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~-~-~~---~-~~~~~v~~~d~~d~~~l~~~~~~-----~~id 149 (519)
.++++|+|++ +....+++.|.+. |++++.+...+.. . .. . .....+ ..|..+.+.+.++.++ .++|
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~g~iD 85 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKA-GADIVGVGVAEAPETQAQVEALGRKFHFI-TADLIQQKDIDSIVSQAVEVMGHID 85 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEecCchHHHHHHHHHHcCCeEEEE-EeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4788999966 3556788888877 8988766432110 0 00 0 011122 4677776666655543 2588
Q ss_pred EEEE
Q 010065 150 LVVV 153 (519)
Q Consensus 150 ~Vi~ 153 (519)
.++.
T Consensus 86 ~lv~ 89 (251)
T PRK12481 86 ILIN 89 (251)
T ss_pred EEEE
Confidence 8886
No 432
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=37.73 E-value=46 Score=32.89 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=25.6
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
.++++|+|+||...+++.+|.+. |+..+.+.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~-g~~~i~i~ 157 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTH-GVQKLQVA 157 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHC-CCCEEEEE
Confidence 46899999999888899999876 88766653
No 433
>PRK06500 short chain dehydrogenase; Provisional
Probab=37.73 E-value=52 Score=31.07 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=39.1
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC----C-CCCccccCCCCCCHHHHHHHHH---H--cCCcE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN----S-GDATCIPDLDVLDGDAVISFCR---K--WSVGL 150 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~-~~~~~v~~~d~~d~~~l~~~~~---~--~~id~ 150 (519)
.++++|+|++ +....++..|.+. |++++.+..+...... . .....+ ..|..|.+.+.++.+ + .++|+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAE-GARVAITGRDPASLEAARAELGESALVI-RADAGDVAAQKALAQALAEAFGRLDA 83 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHHhCCceEEE-EecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4689999975 3556678888877 8887766432111100 0 011122 456666555444333 2 25888
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
++.
T Consensus 84 vi~ 86 (249)
T PRK06500 84 VFI 86 (249)
T ss_pred EEE
Confidence 886
No 434
>PRK06483 dihydromonapterin reductase; Provisional
Probab=37.68 E-value=68 Score=30.10 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=40.2
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCC-cCC--CCCccccCCCCCCHHHHHHHHHH-----cCCcEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGI-SNS--GDATCIPDLDVLDGDAVISFCRK-----WSVGLVV 152 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~~--~~~~~v~~~d~~d~~~l~~~~~~-----~~id~Vi 152 (519)
.++++|+|++ +....+++.|.+. |++++.++.+.... ... .....+ ..|..+.+.+.++..+ .++|+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~id~lv 79 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQ-GQPVIVSYRTHYPAIDGLRQAGAQCI-QADFSTNAGIMAFIDELKQHTDGLRAII 79 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCchhHHHHHHHcCCEEE-EcCCCCHHHHHHHHHHHHhhCCCccEEE
Confidence 3578999975 4556788888876 88887765432111 000 001122 4566666555554443 2488888
Q ss_pred E
Q 010065 153 V 153 (519)
Q Consensus 153 ~ 153 (519)
.
T Consensus 80 ~ 80 (236)
T PRK06483 80 H 80 (236)
T ss_pred E
Confidence 6
No 435
>PRK08163 salicylate hydroxylase; Provisional
Probab=37.61 E-value=53 Score=33.80 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=26.9
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
.+++|+|+|+|-....++..|++. |+++.+++.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er 35 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQ 35 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEee
Confidence 357899999997667788888887 999888754
No 436
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=37.49 E-value=52 Score=31.11 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=40.8
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC--------CCCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN--------SGDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~--------~~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.+++||+|+++ ....+++.|.+. |++++.++.+...... ......+ ..|..+.+.+.+++++ .+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEE-GAKVAVFDLNREAAEKVAADIRAKGGNAQAF-ACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHHHHhcCCcEEEE-EcCCCCHHHHHHHHHHHHHHcCC
Confidence 47899999653 456678888876 8877766432111000 0011122 5677776666665543 25
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|++|.
T Consensus 81 ~d~vi~ 86 (250)
T TIGR03206 81 VDVLVN 86 (250)
T ss_pred CCEEEE
Confidence 888886
No 437
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=37.38 E-value=51 Score=34.57 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=27.0
Q ss_pred CCCCCccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC
Q 010065 77 TNAGQRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN 116 (519)
Q Consensus 77 ~~~~~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~ 116 (519)
.....+++|+|||+|......++.|.+. +++++++++.+
T Consensus 5 ~~~~~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~ 43 (424)
T PTZ00318 5 TARLKKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRN 43 (424)
T ss_pred ccCCCCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCC
Confidence 3445678999999996554556666443 67888887664
No 438
>PLN00200 argininosuccinate synthase; Provisional
Probab=37.35 E-value=2.5e+02 Score=29.30 Aligned_cols=66 Identities=8% Similarity=0.122 Sum_probs=37.9
Q ss_pred HHHHHHHHCCCCee--CCcHHHHHHhcCHHHHHHHHH----HcCCCCCCeee-cCCHHHHHHHHHHhCCCEEEEeCC
Q 010065 162 GLANKLVKAGIPTF--GPSSEAAALEGSKNFMKNLCD----KYGIPTAKYKT-FTDPNAAKQYIQEEGAPIVVKADG 231 (519)
Q Consensus 162 ~~a~~le~~gip~~--g~~~~~~~~~~dK~~~k~~l~----~~Gi~~p~~~~-v~~~~~~~~~~~~~g~P~VvKP~~ 231 (519)
.+.+..++.|..++ |.+.. -.|-..++.-++ +.++-.|--.. +++.++..+++++.|.|+-.||..
T Consensus 104 ~lv~~A~~~G~~~VahG~tgk----GnDq~rf~~~~~al~pel~ViaPlre~~~~~r~e~~~~A~~~Gipv~~~~~~ 176 (404)
T PLN00200 104 AMVDIAKEVGADAVAHGATGK----GNDQVRFELTFFALNPELKVVAPWREWDIKGREDLIEYAKKHNIPVPVTKKS 176 (404)
T ss_pred HHHHHHHHcCCCEEEeCCcCC----CCcHHHHHHHHHHhCCCCeeeCchhhcCCCCHHHHHHHHHHcCCCCCCCCCC
Confidence 34555667777765 33322 255555543333 44454443221 225778888888889888777753
No 439
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=37.27 E-value=1e+02 Score=29.40 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=23.1
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
.++++|+|++ +...+++..|.+. |..++++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~ 39 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQS-GVNIAFTY 39 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEc
Confidence 4689999976 3556788888877 88877653
No 440
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=37.11 E-value=78 Score=30.18 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=39.8
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc---CC----CCCccccCCCCCCHHHHHHHHHH-----cCC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS---NS----GDATCIPDLDVLDGDAVISFCRK-----WSV 148 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~---~~----~~~~~v~~~d~~d~~~l~~~~~~-----~~i 148 (519)
.++++|+|++ +....+++.|.+. |++++.++.+..... .. .....+ ..|..+.+.+.+++++ .++
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~i 85 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAE-GARVVLVDRSELVHEVAAELRAAGGEALAL-TADLETYAGAQAAMAAAVEAFGRI 85 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCchHHHHHHHHHHhcCCeEEEE-EEeCCCHHHHHHHHHHHHHHcCCC
Confidence 4689999976 3556788888877 888777653311000 00 001112 4566665555554443 257
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|.++.
T Consensus 86 d~lv~ 90 (260)
T PRK12823 86 DVLIN 90 (260)
T ss_pred eEEEE
Confidence 87776
No 441
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=36.98 E-value=2.8e+02 Score=28.27 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=21.2
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFC 112 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~ 112 (519)
.++|+++.-|-. +.+.+.|.+. |++++++
T Consensus 179 ~~~Vv~iD~GvK-~nIlr~L~~r-g~~vtVV 207 (368)
T COG0505 179 GKHVVVIDFGVK-RNILRELVKR-GCRVTVV 207 (368)
T ss_pred CcEEEEEEcCcc-HHHHHHHHHC-CCeEEEE
Confidence 568888887743 3467888877 8888766
No 442
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=36.98 E-value=18 Score=32.92 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=17.4
Q ss_pred CCceeccCCceeEEeccCCCc
Q 010065 33 NNLRFSVGPNFSISFNPQGSK 53 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~ 53 (519)
++++|...|.+.||||||...
T Consensus 145 ~a~~~~~~~i~GvQfHPE~~~ 165 (178)
T cd01744 145 EGIRHKDLPVFSVQFHPEASP 165 (178)
T ss_pred EEEEECCCCeEEEeeCCCCCC
Confidence 356788899999999999754
No 443
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=36.94 E-value=70 Score=30.72 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=40.9
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCc----CC----CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGIS----NS----GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~----~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|+++ ....++..|.+. |+++++++.+..... .. .....+ ..|..+.+.+.+++.+ .+
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKA-GATIVFNDINQELVDKGLAAYRELGIEAHGY-VCDVTDEDGVQAMVSQIEKEVGV 87 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcCCceEEE-EcCCCCHHHHHHHHHHHHHhCCC
Confidence 46799999763 445678888776 888776643321100 00 011112 5677777766666554 34
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 88 id~li~ 93 (265)
T PRK07097 88 IDILVN 93 (265)
T ss_pred CCEEEE
Confidence 788886
No 444
>PRK08818 prephenate dehydrogenase; Provisional
Probab=36.84 E-value=2.3e+02 Score=29.21 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=25.7
Q ss_pred CccEEEEEeC-ChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 81 QRVVVLVIGG-GGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 81 ~~~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
...+|.|||. |.....++++|++..+++++.+++.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~ 38 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPA 38 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 3579999999 8666678888886557776666543
No 445
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=36.84 E-value=1.3e+02 Score=32.04 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=52.5
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC----c--CCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI----S--NSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~----~--~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
..+++.|.+.+.+...+++.|.+ .|.+++.+...+... + .......+ ..+..|...+.+.+++.++|+++.+
T Consensus 325 ~Gkrv~i~~g~~~~~~l~~~l~e-lGmevv~~~t~~~~~~d~~~l~~~~~~~~~-v~~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 325 KGKKAAIYTGGVKSWSLVSALQD-LGMEVVATGTQKGTEEDYARIRELMGEGTV-MLDDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred CCCEEEEEcCCchHHHHHHHHHH-CCCEEEEEeeecCCHHHHHHHHHHcCCCeE-EEeCCCHHHHHHHHhhcCCCEEEEc
Confidence 35788877766666777887765 499987763211110 0 00000111 3344578889999999999999864
Q ss_pred CChhhHHHHHHHHHHCCCCee
Q 010065 155 PEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~ 175 (519)
.-.. .+ ..++|+|++
T Consensus 403 ~~~~---~~---a~k~giP~i 417 (456)
T TIGR01283 403 GKER---YT---ALKLGIPFC 417 (456)
T ss_pred cchH---HH---HHhcCCCEE
Confidence 3222 12 446899976
No 446
>PLN02335 anthranilate synthase
Probab=36.69 E-value=19 Score=34.22 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=16.6
Q ss_pred CCceeccCC-ceeEEeccCCC
Q 010065 33 NNLRFSVGP-NFSISFNPQGS 52 (519)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~~ 52 (519)
++++|+..| .+.||||||..
T Consensus 177 ~ai~~~~~~~i~GvQfHPE~~ 197 (222)
T PLN02335 177 MAARHRKYKHIQGVQFHPESI 197 (222)
T ss_pred EEEEecCCCCEEEEEeCCCCC
Confidence 467788888 79999999975
No 447
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=36.63 E-value=1.2e+02 Score=32.78 Aligned_cols=71 Identities=23% Similarity=0.209 Sum_probs=46.0
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCC-CCcC----------CCCCccccCCCCCCHHHHHHHHHHcCC
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNA-GISN----------SGDATCIPDLDVLDGDAVISFCRKWSV 148 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~-~~~~----------~~~~~~v~~~d~~d~~~l~~~~~~~~i 148 (519)
..++|||.|+|| ...++++.+.+. +.+.+.+-+.+. .... ......+ ..|..|.+.+.+..+.+++
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~-~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~-igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKF-NPKEIILFSRDEYKLYLIDMELREKFPELKLRFY-IGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhc-CCCEEEEecCchHHHHHHHHHHHhhCCCcceEEE-ecccccHHHHHHHHhcCCC
Confidence 468999999886 356678887776 666665532211 1100 0001111 3588889999999999999
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|.||-
T Consensus 327 d~VfH 331 (588)
T COG1086 327 DIVFH 331 (588)
T ss_pred ceEEE
Confidence 99994
No 448
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=36.58 E-value=1.7e+02 Score=27.78 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=25.6
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
.++|.|.|.|.....+++.|.+. |.+++.+.+.
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~ 63 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDS 63 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 57999999997666778888776 8888866443
No 449
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=36.57 E-value=3e+02 Score=27.89 Aligned_cols=88 Identities=23% Similarity=0.247 Sum_probs=45.8
Q ss_pred CccEEEEEeCChh-HHHHHHHHHhc--CCCcEEEEecC-CCCCc-CCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECC
Q 010065 81 QRVVVLVIGGGGR-EHALCYALKRS--HSCDAVFCAPG-NAGIS-NSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGP 155 (519)
Q Consensus 81 ~~~~vliiG~g~~-~~~l~~~l~~~--~g~~~v~~~~~-~~~~~-~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~ 155 (519)
++++|.|+|+.|. ..++.+.|.+. +..+...+... ..+.. .... ..+ .++..+.+. + .++|.||...
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~-~~l-~~~~~~~~~---~---~~vD~vFla~ 74 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG-KNL-RVREVDSFD---F---SQVQLAFFAA 74 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC-cce-EEeeCChHH---h---cCCCEEEEcC
Confidence 4579999998753 45677777743 23333334322 22211 0110 111 122222222 2 3689999843
Q ss_pred ChhhHHHHHHHHHHCCCCeeC
Q 010065 156 EAPLVSGLANKLVKAGIPTFG 176 (519)
Q Consensus 156 E~~~~~~~a~~le~~gip~~g 176 (519)
..+....++..+.+.|++++-
T Consensus 75 p~~~s~~~v~~~~~~G~~VID 95 (336)
T PRK05671 75 GAAVSRSFAEKARAAGCSVID 95 (336)
T ss_pred CHHHHHHHHHHHHHCCCeEEE
Confidence 334444566667778998873
No 450
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=36.51 E-value=1.7e+02 Score=29.40 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCcEEEECCC-hhhHHHHHHHHHHCCCCee
Q 010065 138 AVISFCRKWSVGLVVVGPE-APLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 138 ~l~~~~~~~~id~Vi~g~E-~~~~~~~a~~le~~gip~~ 175 (519)
.+.++++++++|+|+..+- ......+ .....++|++
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~~~~~~~--~~~~~~~p~v 118 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYVSGPGGL--AARLLGIPLV 118 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcchhHHHH--HHHHcCCCEE
Confidence 3455677789999998542 2222122 2345688875
No 451
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=36.46 E-value=19 Score=33.37 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=17.1
Q ss_pred CCceeccCCceeEEeccCCC
Q 010065 33 NNLRFSVGPNFSISFNPQGS 52 (519)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ 52 (519)
.+++|.-.|.+.+|||||..
T Consensus 153 ~a~~~~~~~i~gvQFHPE~~ 172 (195)
T PRK07649 153 MAIRHKTLPIEGVQFHPESI 172 (195)
T ss_pred EEEEECCCCEEEEEECCCCC
Confidence 46788899999999999953
No 452
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.45 E-value=1.3e+02 Score=29.10 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=24.8
Q ss_pred CccEEEEEeCC---hhHHHHHHHHHhcCCCcEEEEe
Q 010065 81 QRVVVLVIGGG---GREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 81 ~~~~vliiG~g---~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+.+.++|+|++ +...++++.|.+. |.++++.+
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~ 40 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQ-GAELAFTY 40 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhC-CCEEEEec
Confidence 45789999976 5677889999887 88877654
No 453
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=36.44 E-value=3e+02 Score=27.53 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=24.8
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
||+|+|.|+..-.+++.|... |+..+.+.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-GVg~ItlvD 30 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-GVRHITFVD 30 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCeEEEEC
Confidence 689999999888889999877 888776643
No 454
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=36.41 E-value=1.2e+02 Score=30.14 Aligned_cols=68 Identities=15% Similarity=0.020 Sum_probs=40.0
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC------C----CCCccccCCCCCCHHHHHHHHHHcCCcE
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN------S----GDATCIPDLDVLDGDAVISFCRKWSVGL 150 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~------~----~~~~~v~~~d~~d~~~l~~~~~~~~id~ 150 (519)
.+++||+|+.+ ....++..|.+. |++++.+..+...... . .....+ ..|..+.+.+.++++ ++|.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~d~~~~~~~~~--~~d~ 80 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFR-GYTINATVRDPKDRKKTDHLLALDGAKERLKLF-KADLLDEGSFELAID--GCET 80 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHC-CCEEEEEEcCCcchhhHHHHHhccCCCCceEEE-eCCCCCchHHHHHHc--CCCE
Confidence 47899999754 456678888877 8887665433211100 0 011122 457777666666554 5788
Q ss_pred EEE
Q 010065 151 VVV 153 (519)
Q Consensus 151 Vi~ 153 (519)
|+.
T Consensus 81 vih 83 (325)
T PLN02989 81 VFH 83 (325)
T ss_pred EEE
Confidence 886
No 455
>PRK08226 short chain dehydrogenase; Provisional
Probab=36.23 E-value=85 Score=29.96 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=41.7
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC---C----CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN---S----GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~---~----~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
+.++++|+|+.+ ....++..|.+. |++++.++.+...... . .....+ ..|..+.+.+.+++++ .+
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~-G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~v~~~~~~~~~~~~~ 82 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARH-GANLILLDISPEIEKLADELCGRGHRCTAV-VADVRDPASVAAAIKRAKEKEGR 82 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHHHHhCCceEEE-ECCCCCHHHHHHHHHHHHHHcCC
Confidence 347899998663 456678888876 8887776533210000 0 011122 4677776666665544 26
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 83 id~vi~ 88 (263)
T PRK08226 83 IDILVN 88 (263)
T ss_pred CCEEEE
Confidence 888887
No 456
>PRK06172 short chain dehydrogenase; Provisional
Probab=36.17 E-value=63 Score=30.68 Aligned_cols=71 Identities=24% Similarity=0.295 Sum_probs=41.1
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----C---C-CCCccccCCCCCCHHHHHHHHHHc-----
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----N---S-GDATCIPDLDVLDGDAVISFCRKW----- 146 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~---~-~~~~~v~~~d~~d~~~l~~~~~~~----- 146 (519)
+.++++|+|++ +....++..|.+. |.+++.++.+..... . . .....+ ..|..+.+.+.++.++.
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFARE-GAKVVVADRDAAGGEETVALIREAGGEALFV-ACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEE-EcCCCCHHHHHHHHHHHHHHhC
Confidence 34789999976 3456678888876 888777653311100 0 0 011122 46777766665554432
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|+++.
T Consensus 84 ~id~li~ 90 (253)
T PRK06172 84 RLDYAFN 90 (253)
T ss_pred CCCEEEE
Confidence 6788886
No 457
>PRK06139 short chain dehydrogenase; Provisional
Probab=36.15 E-value=79 Score=31.91 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=42.2
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC-------C-CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN-------S-GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-------~-~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|++ +....++..+.+. |+++++++.+...... . .....+ ..|..|.+.+.+++++ .+
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~-G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~-~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARR-GARLVLAARDEEALQAVAEECRALGAEVLVV-PTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEE-EeeCCCHHHHHHHHHHHHHhcCC
Confidence 4689999975 4556788888877 8888776543111100 0 011122 4577777666665543 35
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|.+|.
T Consensus 85 iD~lVn 90 (330)
T PRK06139 85 IDVWVN 90 (330)
T ss_pred CCEEEE
Confidence 898887
No 458
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=36.10 E-value=53 Score=34.02 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=27.2
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPGN 116 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~ 116 (519)
++|+|||+|-.....++.|++. |.++++++.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 5899999996666789999887 89998887653
No 459
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.05 E-value=1.3e+02 Score=28.75 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=24.2
Q ss_pred ccEEEEEeCC---hhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGG---GREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g---~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
.+.++|+|++ +...++++.|.+. |.++++++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~-G~~v~~~~ 40 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNA-GAKLVFTY 40 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEec
Confidence 4689999973 6677889999887 88877664
No 460
>PRK08862 short chain dehydrogenase; Provisional
Probab=36.00 E-value=91 Score=29.37 Aligned_cols=31 Identities=13% Similarity=0.385 Sum_probs=23.0
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
.++++|+|++ +...+++..|.+. |..++.+.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~-G~~V~~~~ 36 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARL-GATLILCD 36 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHC-CCEEEEEc
Confidence 4678999877 3556788888877 88877654
No 461
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=35.89 E-value=1.7e+02 Score=27.63 Aligned_cols=88 Identities=16% Similarity=0.339 Sum_probs=44.6
Q ss_pred HHHHHHHcCCcEEEE---CCChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHHHHHHHHHHcCCCC--CCeeecCCHHH
Q 010065 139 VISFCRKWSVGLVVV---GPEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKNFMKNLCDKYGIPT--AKYKTFTDPNA 213 (519)
Q Consensus 139 l~~~~~~~~id~Vi~---g~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gi~~--p~~~~v~~~~~ 213 (519)
+...++..++..+.. +.+......+.+.++.+++..+ -.-++..-..|....+.+.++|+.. |-|. .+..+
T Consensus 50 ~~~qA~algipl~~~~~~g~~~~~~~~l~~~l~~~~v~~v--v~GdI~~~~~r~~~e~vc~~lGl~~~~PLW~--~d~~~ 125 (218)
T PF01902_consen 50 IEAQAEALGIPLIEIPTSGDEEDYVEDLKEALKELKVEAV--VFGDIDSEYQRNWVERVCERLGLEAVFPLWG--RDREE 125 (218)
T ss_dssp HHHHHHHHT--EEEEEE---CCCHHHHHHHHHCTC--SEE--E--TTS-HHHHHHHHHHHHHCT-EEE-TTTT----HHH
T ss_pred HHHHHHHCCCCEEEEEccCccchhhHHHHHHHHHcCCCEE--EECcCCcHHHHHHHHHHHHHcCCEEEecccC--CCHHH
Confidence 444455566665553 3344445667777888886643 2223333445788899999999976 3322 24444
Q ss_pred H-HHHHHHhCCCEEEEeCC
Q 010065 214 A-KQYIQEEGAPIVVKADG 231 (519)
Q Consensus 214 ~-~~~~~~~g~P~VvKP~~ 231 (519)
+ .+++ +.||..++.-++
T Consensus 126 ll~e~i-~~Gf~aiIv~V~ 143 (218)
T PF01902_consen 126 LLREFI-ESGFEAIIVKVD 143 (218)
T ss_dssp HHHHHH-HTT-EEEEEEEE
T ss_pred HHHHHH-HCCCeEEEEEEe
Confidence 4 4555 458876665443
No 462
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=35.74 E-value=4.5e+02 Score=26.01 Aligned_cols=83 Identities=19% Similarity=0.137 Sum_probs=41.1
Q ss_pred HHHcCCcEEEEC---C-ChhhHHHHHHHHHHCCCCeeCCcHHHHHHhc---------------CHHHHHHHHHHcCCCCC
Q 010065 143 CRKWSVGLVVVG---P-EAPLVSGLANKLVKAGIPTFGPSSEAAALEG---------------SKNFMKNLCDKYGIPTA 203 (519)
Q Consensus 143 ~~~~~id~Vi~g---~-E~~~~~~~a~~le~~gip~~g~~~~~~~~~~---------------dK~~~k~~l~~~Gi~~p 203 (519)
...++.|.|+.| + +......+.+.++..-.|++ -+.++..++. ++..+++++.. .++
T Consensus 97 ~~~~~~~avviGpGlG~~~~~~~~~~~~l~~~~~p~V-iDADaL~~la~~~~~~~~~~~VlTPH~gEf~rL~g~---~~~ 172 (284)
T COG0063 97 ELVERADAVVIGPGLGRDAEGQEALKELLSSDLKPLV-LDADALNLLAELPDLLDERKVVLTPHPGEFARLLGT---EVD 172 (284)
T ss_pred hhhccCCEEEECCCCCCCHHHHHHHHHHHhccCCCEE-EeCcHHHHHHhCcccccCCcEEECCCHHHHHHhcCC---ccc
Confidence 344678999984 2 22222233333433227876 5666665322 22333333322 111
Q ss_pred CeeecCCHHHHHHHHHHhCCCEEEEeC
Q 010065 204 KYKTFTDPNAAKQYIQEEGAPIVVKAD 230 (519)
Q Consensus 204 ~~~~v~~~~~~~~~~~~~g~P~VvKP~ 230 (519)
+ ...+..+.+.+++++++-=+|+|-.
T Consensus 173 ~-~~~~r~~~a~~~a~~~~~vvVLKG~ 198 (284)
T COG0063 173 E-IEVDRLEAARELAAKYGAVVVLKGA 198 (284)
T ss_pred c-cccchHHHHHHHHHHcCCEEEEeCC
Confidence 1 1223355566677777766777753
No 463
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=35.68 E-value=51 Score=35.16 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=53.3
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC---CCCC----cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG---NAGI----SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~---~~~~----~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
..+++.|.+++.....++..++ +.|.+++..... +... ..... ..+ .++..|..++.+++++.++|.++.
T Consensus 334 ~GKrv~i~~g~~~~~~~~~~l~-ELGmevv~~g~~~~~~~~~~~~~~~~~~-~~~-i~~~~d~~el~~~i~~~~pDl~ig 410 (466)
T TIGR01282 334 EGKTVMLYVGGLRPRHVIGAFE-DLGMEVIGTGYEFAHNDDYERTTKYMKD-GTL-IYDDVTHYEFEEFVEKLKPDLVGS 410 (466)
T ss_pred CCCEEEEECCCCcHHHHHHHHH-HCCCEEEEEeeecCCHHHHHHHHHhcCC-CeE-EeeCCCHHHHHHHHHHhCCCEEEe
Confidence 4578999887766666666665 459998865321 0000 01111 112 345567888899999999999998
Q ss_pred CCChhhHHHHHHHHHHCCCCe
Q 010065 154 GPEAPLVSGLANKLVKAGIPT 174 (519)
Q Consensus 154 g~E~~~~~~~a~~le~~gip~ 174 (519)
++-... + ..++|+|+
T Consensus 411 ~~~~~~---~---a~k~gIP~ 425 (466)
T TIGR01282 411 GIKEKY---V---FQKMGVPF 425 (466)
T ss_pred cCCccc---e---eeecCCCc
Confidence 654332 2 55789996
No 464
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=35.64 E-value=72 Score=30.83 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=39.7
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC----C----CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN----S----GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~----~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|++ +....++..|.+. |++++.++.+...... . .....+ ..|..+.+.+..+.++ .+
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~v~~~~~~~~~~~g~ 87 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARA-GAKVAILDRNQEKAEAVVAEIKAAGGEALAV-KADVLDKESLEQARQQILEDFGP 87 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE-ECCCCCHHHHHHHHHHHHHHcCC
Confidence 4689999975 4556788888876 8887766543111000 0 001112 4566666555544432 26
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 88 id~li~ 93 (278)
T PRK08277 88 CDILIN 93 (278)
T ss_pred CCEEEE
Confidence 788876
No 465
>PRK05650 short chain dehydrogenase; Provisional
Probab=35.60 E-value=91 Score=30.01 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=40.0
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc-------C-CCCCccccCCCCCCHHHHHHHHHH-----cCC
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS-------N-SGDATCIPDLDVLDGDAVISFCRK-----WSV 148 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~-------~-~~~~~~v~~~d~~d~~~l~~~~~~-----~~i 148 (519)
++++|+|+. +....+++.|.+. |.+++.++.+..... . ......+ ..|..+.+.+.++++. .++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWARE-GWRLALADVNEEGGEETLKLLREAGGDGFYQ-RCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEE-EccCCCHHHHHHHHHHHHHHcCCC
Confidence 468999865 3556688888877 888777653321100 0 0011122 4577776665555443 368
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|.+|.
T Consensus 79 d~lI~ 83 (270)
T PRK05650 79 DVIVN 83 (270)
T ss_pred CEEEE
Confidence 88887
No 466
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=35.57 E-value=3.1e+02 Score=28.90 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=46.8
Q ss_pred ccEEEEEeCChhHHHHHHHHHhc--CCCcEEEEecCCCCCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECC--Ch
Q 010065 82 RVVVLVIGGGGREHALCYALKRS--HSCDAVFCAPGNAGISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGP--EA 157 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~--~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~--E~ 157 (519)
..+++|+|+|.....+...+.+. .|++.+.+-+.+...... ..+ ++ ..+.+++.++++++++|-|+... ++
T Consensus 124 ~rrvLIIGag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i---~gv-pV-lG~~~dl~~~v~~~~Id~ViIAlp~~~ 198 (442)
T TIGR03013 124 KRRILVLGTGPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYV---PSE-HV-IENGDGLVEYVLRHRIDEIVIALDERR 198 (442)
T ss_pred CCcEEEEECCHHHHHHHHHHHhCccCCeEEEEEEcCCcccccc---CCC-cc-cCCHHHHHHHHHhCCCCEEEEECchhh
Confidence 46799999996554553333222 367666543221111111 111 11 23467788899999999888732 11
Q ss_pred hh-HHHHHHHHHHCCCCee
Q 010065 158 PL-VSGLANKLVKAGIPTF 175 (519)
Q Consensus 158 ~~-~~~~a~~le~~gip~~ 175 (519)
.. .......++..|+++.
T Consensus 199 ~~~~~~~l~~~~~~gv~V~ 217 (442)
T TIGR03013 199 GSLPVDELLECKLSGIEVV 217 (442)
T ss_pred cchHHHHHHHHHhCCCEEE
Confidence 11 0112345677777664
No 467
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=35.52 E-value=1.4e+02 Score=29.71 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=24.2
Q ss_pred EEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 84 VVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 84 ~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
+|+|+|.||..-++++.|... |+..+.+.
T Consensus 1 kVlVVGaGGlG~eilknLal~-Gvg~I~Iv 29 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-GFRNIHVI 29 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 589999999888889999877 88877664
No 468
>PRK06482 short chain dehydrogenase; Provisional
Probab=35.52 E-value=69 Score=30.93 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=40.7
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC-----CCCCccccCCCCCCHHHHHHHHHH-----cCCcEE
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN-----SGDATCIPDLDVLDGDAVISFCRK-----WSVGLV 151 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-----~~~~~~v~~~d~~d~~~l~~~~~~-----~~id~V 151 (519)
+++||+|++ +....++..|.+. |++++.+..+...... ......+ ..|..|.+.+.+++++ .++|.|
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLAR-GDRVAATVRRPDALDDLKARYGDRLWVL-QLDVTDSAAVRAVVDRAFAALGRIDVV 80 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhccCceEEE-EccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 579999965 4556678888876 8877665432111000 0011222 5677777766665543 358988
Q ss_pred EE
Q 010065 152 VV 153 (519)
Q Consensus 152 i~ 153 (519)
|.
T Consensus 81 i~ 82 (276)
T PRK06482 81 VS 82 (276)
T ss_pred EE
Confidence 87
No 469
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=35.50 E-value=3.1e+02 Score=24.80 Aligned_cols=126 Identities=16% Similarity=0.086 Sum_probs=72.2
Q ss_pred HHHHhcCCCcEEEEecCCCCCcCCCCCccccCCCCC----CHHHHHHHHHHcCCcEEEECCChhhHHHHHHHHHHCCCCe
Q 010065 99 YALKRSHSCDAVFCAPGNAGISNSGDATCIPDLDVL----DGDAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPT 174 (519)
Q Consensus 99 ~~l~~~~g~~~v~~~~~~~~~~~~~~~~~v~~~d~~----d~~~l~~~~~~~~id~Vi~g~E~~~~~~~a~~le~~gip~ 174 (519)
..|.+. |++-+++|-+|.- + ..|.. ...+.++-+++..+..++...-.. ..++..++.+|+|+
T Consensus 21 ~~L~~~-Gikgvi~DlDNTL---------v-~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e--~RV~~~~~~l~v~f 87 (175)
T COG2179 21 DILKAH-GIKGVILDLDNTL---------V-PWDNPDATPELRAWLAELKEAGIKVVVVSNNKE--SRVARAAEKLGVPF 87 (175)
T ss_pred HHHHHc-CCcEEEEeccCce---------e-cccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCH--HHHHhhhhhcCCce
Confidence 345555 9999888755532 1 11211 133334445556677666632221 14566689999999
Q ss_pred eCCcHHHHHHhcCHHHHHHHHHHcCCCCCCeeecCCHH--HHHHHHHHhC-CCEEEEeCCCCCCCcEEEeCC
Q 010065 175 FGPSSEAAALEGSKNFMKNLCDKYGIPTAKYKTFTDPN--AAKQYIQEEG-APIVVKADGLAAGKGVIVAMT 243 (519)
Q Consensus 175 ~g~~~~~~~~~~dK~~~k~~l~~~Gi~~p~~~~v~~~~--~~~~~~~~~g-~P~VvKP~~g~gs~GV~~v~~ 243 (519)
+..-.. -....+++.+++.+++......+-+.= |+. .....| +-+.|+|.-...+....+.+.
T Consensus 88 i~~A~K-----P~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVl-ggnr~G~~tIlV~Pl~~~d~~~t~~nR~ 153 (175)
T COG2179 88 IYRAKK-----PFGRAFRRALKEMNLPPEEVVMVGDQLFTDVL-GGNRAGMRTILVEPLVAPDGWITKINRW 153 (175)
T ss_pred eecccC-----ccHHHHHHHHHHcCCChhHEEEEcchhhhhhh-cccccCcEEEEEEEeccccchhhhhhHH
Confidence 843222 224567888999999998887775421 111 113345 457899987666654444433
No 470
>PRK06753 hypothetical protein; Provisional
Probab=35.45 E-value=55 Score=33.32 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=25.4
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEec
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
++|+|+|+|-....++..|++. |+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~ 31 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ-GHEVKVFEK 31 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEec
Confidence 5899999997666778888887 999888753
No 471
>PRK07060 short chain dehydrogenase; Provisional
Probab=35.41 E-value=52 Score=30.94 Aligned_cols=70 Identities=24% Similarity=0.195 Sum_probs=42.4
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC---CCCccccCCCCCCHHHHHHHHHHc-CCcEEEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS---GDATCIPDLDVLDGDAVISFCRKW-SVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~---~~~~~v~~~d~~d~~~l~~~~~~~-~id~Vi~ 153 (519)
.++++|+|++ +....++..+.+. |++++.++.+....... .....+ ..|..+.+.+.+..+.. ++|+||.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~~~d~vi~ 83 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQR-GARVVAAARNAAALDRLAGETGCEPL-RLDVGDDAAIRAALAAAGAFDGLVN 83 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCeEE-EecCCCHHHHHHHHHHhCCCCEEEE
Confidence 4689999975 4556678888776 88877665331111000 011122 45777777777666653 5898886
No 472
>PRK06953 short chain dehydrogenase; Provisional
Probab=35.32 E-value=92 Score=28.91 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=40.1
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcCC--CCCccccCCCCCCHHHHHHHHHH---cCCcEEEE
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISNS--GDATCIPDLDVLDGDAVISFCRK---WSVGLVVV 153 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--~~~~~v~~~d~~d~~~l~~~~~~---~~id~Vi~ 153 (519)
++++|+|++ +....+++.|.+. |++++.++.+....... .....+ ..|..+.+.+.++..+ .++|+++.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~-G~~v~~~~r~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~~~~~d~vi~ 76 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRAD-GWRVIATARDAAALAALQALGAEAL-ALDVADPASVAGLAWKLDGEALDAAVY 76 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhC-CCEEEEEECCHHHHHHHHhccceEE-EecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 578888855 3456678888766 88877765431111100 011122 5677776666665433 35898887
No 473
>PRK05854 short chain dehydrogenase; Provisional
Probab=35.27 E-value=73 Score=31.74 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=23.1
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEec
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAP 114 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~ 114 (519)
.++++|+|++ +....+++.|.+. |.+++++..
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~-G~~Vil~~R 46 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAA-GAEVILPVR 46 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeC
Confidence 4678888866 3556788888877 888776643
No 474
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=35.20 E-value=1.4e+02 Score=33.41 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=42.9
Q ss_pred CCccEEEEEeCCh-hHHHHHHHHHhc-CCCcEEEEecCC--CCCcC------CCCCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 80 GQRVVVLVIGGGG-REHALCYALKRS-HSCDAVFCAPGN--AGISN------SGDATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 80 ~~~~~vliiG~g~-~~~~l~~~l~~~-~g~~~v~~~~~~--~~~~~------~~~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
++.++|||+|+.| ....++..|.+. .+++++.++..+ ..... ......+ ..|..|.+.+.......++|
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~-~~Dl~d~~~~~~~~~~~~~D 82 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFV-KGDIASADLVNYLLITEGID 82 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEE-ECCCCChHHHHHHHhhcCCC
Confidence 3568999999754 455678888765 256766665321 00000 0011222 46777776666666567899
Q ss_pred EEEE
Q 010065 150 LVVV 153 (519)
Q Consensus 150 ~Vi~ 153 (519)
.||-
T Consensus 83 ~ViH 86 (668)
T PLN02260 83 TIMH 86 (668)
T ss_pred EEEE
Confidence 9985
No 475
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=35.17 E-value=54 Score=32.38 Aligned_cols=30 Identities=27% Similarity=0.533 Sum_probs=25.1
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEE
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFC 112 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~ 112 (519)
.++++|+|+||...++++.|.+. |...+.+
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~-g~~~i~V 155 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEA-GAKRITV 155 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCCEEEE
Confidence 37899999999988999999988 8765555
No 476
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=34.86 E-value=53 Score=32.69 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=24.7
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
++|+|+|+|.....++..|++. |+++++++..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~ 33 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-GIDVTIIERR 33 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred ceEEEECCCHHHHHHHHHHHhc-ccccccchhc
Confidence 5899999997667788999888 9999888643
No 477
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=34.84 E-value=1.2e+02 Score=28.91 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=23.5
Q ss_pred CccEEEEEeC-ChhHHHHHHHHHhcCCCcEEEEe
Q 010065 81 QRVVVLVIGG-GGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 81 ~~~~vliiG~-g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
++++|+|+|+ |.....++..|.+. |++++.+.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~-g~~V~~~~ 48 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAK-GFAVKAGV 48 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhC-CCEEEEEe
Confidence 3689999996 44556778888776 88876554
No 478
>PRK09134 short chain dehydrogenase; Provisional
Probab=34.83 E-value=1.1e+02 Score=29.06 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=39.7
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCC-cC--------CCCCccccCCCCCCHHHHHHHHHH-----c
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGI-SN--------SGDATCIPDLDVLDGDAVISFCRK-----W 146 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~-~~--------~~~~~~v~~~d~~d~~~l~~~~~~-----~ 146 (519)
.++++|+|+++ ....++..+.+. |++++.+...+... .. -.....+ ..|..|.+.+.++.++ -
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~~~~ 86 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAH-GFDVAVHYNRSRDEAEALAAEIRALGRRAVAL-QADLADEAEVRALVARASAALG 86 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEE-EcCCCCHHHHHHHHHHHHHHcC
Confidence 46899999763 445677778766 88776654322110 00 0011122 4677776666655443 2
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|+|+.
T Consensus 87 ~iD~vi~ 93 (258)
T PRK09134 87 PITLLVN 93 (258)
T ss_pred CCCEEEE
Confidence 4888886
No 479
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=34.71 E-value=1.6e+02 Score=31.46 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=52.8
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCC------cCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGI------SNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~------~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
..+++.|.+.+.+...+++.+.+ .|.+++.+...+... ........+ .++..+...+.+.+++.++|.++.+
T Consensus 323 ~Gk~vaI~~~~~~~~~la~~l~E-lGm~v~~~~~~~~~~~~~~~l~~~~~~~~~-v~~d~~~~e~~~~i~~~~pDliig~ 400 (475)
T PRK14478 323 EGKRVLLYTGGVKSWSVVKALQE-LGMEVVGTSVKKSTDEDKERIKELMGPDAH-MIDDANPRELYKMLKEAKADIMLSG 400 (475)
T ss_pred CCCEEEEEcCCchHHHHHHHHHH-CCCEEEEEEEECCCHHHHHHHHHHcCCCcE-EEeCCCHHHHHHHHhhcCCCEEEec
Confidence 35788887777666677887765 499887664221111 000011111 2344557788888888999999975
Q ss_pred CChhhHHHHHHHHHHCCCCee
Q 010065 155 PEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~ 175 (519)
.... ....++|+|++
T Consensus 401 s~~~------~~a~k~giP~~ 415 (475)
T PRK14478 401 GRSQ------FIALKAGMPWL 415 (475)
T ss_pred Cchh------hhhhhcCCCEE
Confidence 3332 12557899986
No 480
>PRK09072 short chain dehydrogenase; Provisional
Probab=34.70 E-value=62 Score=30.99 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=40.7
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----C---CCCCccccCCCCCCHHHHHHHHHH----cCCc
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----N---SGDATCIPDLDVLDGDAVISFCRK----WSVG 149 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~---~~~~~~v~~~d~~d~~~l~~~~~~----~~id 149 (519)
.++++|+|++ +....++..+.+. |++++.++.+..... . ......+ ..|..|.+.+.++.+. .++|
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~D~~d~~~~~~~~~~~~~~~~id 82 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAA-GARLLLVGRNAEKLEALAARLPYPGRHRWV-VADLTSEAGREAVLARAREMGGIN 82 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHhcCCceEEE-EccCCCHHHHHHHHHHHHhcCCCC
Confidence 4679999965 4556788888877 888777653311000 0 0011122 4677776665554432 3588
Q ss_pred EEEE
Q 010065 150 LVVV 153 (519)
Q Consensus 150 ~Vi~ 153 (519)
+++.
T Consensus 83 ~lv~ 86 (263)
T PRK09072 83 VLIN 86 (263)
T ss_pred EEEE
Confidence 8887
No 481
>PRK07832 short chain dehydrogenase; Provisional
Probab=34.62 E-value=73 Score=30.76 Aligned_cols=70 Identities=23% Similarity=0.296 Sum_probs=39.2
Q ss_pred cEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC-------C-CCCccccCCCCCCHHHHHHHHHH-----cCC
Q 010065 83 VVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN-------S-GDATCIPDLDVLDGDAVISFCRK-----WSV 148 (519)
Q Consensus 83 ~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~-------~-~~~~~v~~~d~~d~~~l~~~~~~-----~~i 148 (519)
++++|+|++ +....++..+.+. |+.++++..+...... . .........|..+.+.+.++..+ .++
T Consensus 1 k~vlItGas~giG~~la~~la~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQ-GAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 468899966 3556678888876 8887766533211000 0 00011114577776666554443 258
Q ss_pred cEEEE
Q 010065 149 GLVVV 153 (519)
Q Consensus 149 d~Vi~ 153 (519)
|+++.
T Consensus 80 d~lv~ 84 (272)
T PRK07832 80 DVVMN 84 (272)
T ss_pred CEEEE
Confidence 88886
No 482
>PRK06949 short chain dehydrogenase; Provisional
Probab=34.62 E-value=67 Score=30.54 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=40.8
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC--------CCCCccccCCCCCCHHHHHHHHHHc-----C
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN--------SGDATCIPDLDVLDGDAVISFCRKW-----S 147 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~--------~~~~~~v~~~d~~d~~~l~~~~~~~-----~ 147 (519)
.++++|+|++ +....++..+.+. |++++.+..+...... ......+ ..|..+.+.+.++.++. +
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQA-GAKVVLASRRVERLKELRAEIEAEGGAAHVV-SLDVTDYQSIKAAVAHAETEAGT 86 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE-EecCCCHHHHHHHHHHHHHhcCC
Confidence 4789999975 4556678888776 8887766433111000 0011122 45666666666655542 5
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|.++.
T Consensus 87 ~d~li~ 92 (258)
T PRK06949 87 IDILVN 92 (258)
T ss_pred CCEEEE
Confidence 788886
No 483
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=34.44 E-value=2e+02 Score=30.33 Aligned_cols=84 Identities=8% Similarity=0.033 Sum_probs=50.7
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCC-CCcCCCCCccccCCCCCCHHHHHHHHHHcCCcEEEECCChhhH
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNA-GISNSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVGPEAPLV 160 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~-~~~~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g~E~~~~ 160 (519)
.+++.|.+.......++..|.+ .|.+++.+.-.+. .......... +-..|...+.+++++.++|.++.++-..
T Consensus 311 Gkrvai~~~~~~~~~l~~~l~e-lGm~v~~~~~~~~~~~~~~~~~~~---~~~~D~~~l~~~i~~~~~dliig~s~~k-- 384 (432)
T TIGR01285 311 GKKVAIAAEPDLLAAWATFFTS-MGAQIVAAVTTTGSPLLQKLPVET---VVIGDLEDLEDLACAAGADLLITNSHGR-- 384 (432)
T ss_pred CCEEEEEcCHHHHHHHHHHHHH-CCCEEEEEEeCCCCHHHHhCCcCc---EEeCCHHHHHHHHhhcCCCEEEECcchH--
Confidence 4688888766555667777765 4998876643321 1110001111 1235778888888888999998754332
Q ss_pred HHHHHHHHHCCCCee
Q 010065 161 SGLANKLVKAGIPTF 175 (519)
Q Consensus 161 ~~~a~~le~~gip~~ 175 (519)
.+ ..++|+|++
T Consensus 385 -~~---A~~l~ip~i 395 (432)
T TIGR01285 385 -AL---AQRLALPLV 395 (432)
T ss_pred -HH---HHHcCCCEE
Confidence 23 556788875
No 484
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=34.39 E-value=1e+02 Score=34.53 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=39.7
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCC-C--CCccccCCCCCCHHHH-HHHHHHcCCcEEEE
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNS-G--DATCIPDLDVLDGDAV-ISFCRKWSVGLVVV 153 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~-~--~~~~v~~~d~~d~~~l-~~~~~~~~id~Vi~ 153 (519)
..++|||+|+.| ....+++.|.+..|++++.++......... . ....+ ..|..|.+.+ .+.+ .++|+||-
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~-~gDl~d~~~~l~~~l--~~~D~ViH 388 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFV-EGDISIHSEWIEYHI--KKCDVVLP 388 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEE-eccccCcHHHHHHHh--cCCCEEEE
Confidence 357999999765 456678888765478888776432211111 1 11222 3466554443 3333 26898885
No 485
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=34.38 E-value=2.1e+02 Score=29.38 Aligned_cols=85 Identities=21% Similarity=0.186 Sum_probs=51.4
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecCCCCCc-------CCCCCccccCCCCCCHHHHHHHHHHcCCcEEEEC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPGNAGIS-------NSGDATCIPDLDVLDGDAVISFCRKWSVGLVVVG 154 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~~~~~~-------~~~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~g 154 (519)
.+++.|.|.+.....++..|.+ .|.+++.+........ ....... .++..|.+.+.+.+++.++|.++.+
T Consensus 279 g~~~~i~~~~~~~~~~~~~l~e-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~pdl~ig~ 355 (399)
T cd00316 279 GKKVAIFGDGDLLLALARFLLE-LGMEVVAAGTTFGHKADYERREELLGEGTE--VVDDGDLEELEELIRELKPDLIIGG 355 (399)
T ss_pred CCEEEEECCCcHHHHHHHHHHH-CCCEEEEEEeCCCCHHHHHHHHHhcCCCCE--EEeCCCHHHHHHHHhhcCCCEEEEC
Confidence 5788888877666667767775 4888766542211110 0101111 2355678888889999999999975
Q ss_pred CChhhHHHHHHHHHHCCCCee
Q 010065 155 PEAPLVSGLANKLVKAGIPTF 175 (519)
Q Consensus 155 ~E~~~~~~~a~~le~~gip~~ 175 (519)
.-.. .. .++.|+|++
T Consensus 356 ~~~~---~~---~~~~~ip~~ 370 (399)
T cd00316 356 SKGR---YI---AKKLGIPLV 370 (399)
T ss_pred CcHH---HH---HHHhCCCEE
Confidence 4222 12 445688875
No 486
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.31 E-value=1.2e+02 Score=28.87 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCcEEEECCChhhHHHHHHHHHHCCCCeeC
Q 010065 137 DAVISFCRKWSVGLVVVGPEAPLVSGLANKLVKAGIPTFG 176 (519)
Q Consensus 137 ~~l~~~~~~~~id~Vi~g~E~~~~~~~a~~le~~gip~~g 176 (519)
..+++.+...++|+++..+.+.....+.+.+.+.++|++.
T Consensus 45 ~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~ 84 (269)
T cd06281 45 LEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIVL 84 (269)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCCCEEE
Confidence 4555566677899999732111111334456778999863
No 487
>PRK12827 short chain dehydrogenase; Provisional
Probab=34.02 E-value=1.3e+02 Score=28.20 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=22.9
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEe
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
.++++|+|+. +....++..|.+. |++++.++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~-g~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAAD-GADVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCeEEEEc
Confidence 4789999965 3456678888876 88877654
No 488
>PRK04527 argininosuccinate synthase; Provisional
Probab=34.01 E-value=3.7e+02 Score=28.03 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=19.1
Q ss_pred cEEEEEeCChhHHHHHHHHHhcCCCcEEEEe
Q 010065 83 VVVLVIGGGGREHALCYALKRSHSCDAVFCA 113 (519)
Q Consensus 83 ~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~ 113 (519)
.+|+|.-+||....++..+.+..|++++.+.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~G~~Viavt 33 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQERGYAVHTVF 33 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHcCCcEEEEE
Confidence 5788888887654333333333488877664
No 489
>PRK07825 short chain dehydrogenase; Provisional
Probab=33.98 E-value=71 Score=30.82 Aligned_cols=70 Identities=23% Similarity=0.182 Sum_probs=40.1
Q ss_pred ccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CCCCCccccCCCCCCHHHHHHHHHH-----cCCcEE
Q 010065 82 RVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NSGDATCIPDLDVLDGDAVISFCRK-----WSVGLV 151 (519)
Q Consensus 82 ~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~~~~~~v~~~d~~d~~~l~~~~~~-----~~id~V 151 (519)
.++++|+|++ +....++..|.+. |++++....+..... .......+ ..|..|.+.+.++.++ .++|++
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~id~l 82 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAAL-GARVAIGDLDEALAKETAAELGLVVGG-PLDVTDPASFAAFLDAVEADLGPIDVL 82 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhccceEE-EccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 3689999975 4556678888876 888776643211100 00011222 4677776665444432 358888
Q ss_pred EE
Q 010065 152 VV 153 (519)
Q Consensus 152 i~ 153 (519)
+.
T Consensus 83 i~ 84 (273)
T PRK07825 83 VN 84 (273)
T ss_pred EE
Confidence 86
No 490
>PRK07236 hypothetical protein; Provisional
Probab=33.96 E-value=63 Score=33.19 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=27.0
Q ss_pred ccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 82 RVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 82 ~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
.++|+|+|+|-....++..|++. |+++++++..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~ 38 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERS 38 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecC
Confidence 47899999997667788888887 9999888643
No 491
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=33.96 E-value=73 Score=33.78 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=27.3
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
.++.|+|+|+|......++.|++. |+++++++..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~ 71 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKG-GIETFLIERK 71 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence 357999999997666678888877 9999888643
No 492
>PLN02650 dihydroflavonol-4-reductase
Probab=33.88 E-value=1.4e+02 Score=30.12 Aligned_cols=69 Identities=17% Similarity=0.067 Sum_probs=40.1
Q ss_pred CccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcC----CC------CCccccCCCCCCHHHHHHHHHHcCCc
Q 010065 81 QRVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISN----SG------DATCIPDLDVLDGDAVISFCRKWSVG 149 (519)
Q Consensus 81 ~~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~~------~~~~v~~~d~~d~~~l~~~~~~~~id 149 (519)
++++|||+|+.| ....++..|.+. |++++.+..+...... .. ....+ ..|..|.+.+.++++ ++|
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v-~~Dl~d~~~~~~~~~--~~d 79 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLER-GYTVRATVRDPANVKKVKHLLDLPGATTRLTLW-KADLAVEGSFDDAIR--GCT 79 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHC-CCEEEEEEcCcchhHHHHHHHhccCCCCceEEE-EecCCChhhHHHHHh--CCC
Confidence 467899999765 445678888776 8887765433211100 00 01122 456666666666554 478
Q ss_pred EEEE
Q 010065 150 LVVV 153 (519)
Q Consensus 150 ~Vi~ 153 (519)
.|+-
T Consensus 80 ~ViH 83 (351)
T PLN02650 80 GVFH 83 (351)
T ss_pred EEEE
Confidence 8875
No 493
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=33.72 E-value=3.7e+02 Score=24.53 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHhCCCEEEEeCCCC
Q 010065 210 DPNAAKQYIQEEGAPIVVKADGLA 233 (519)
Q Consensus 210 ~~~~~~~~~~~~g~P~VvKP~~g~ 233 (519)
+.+++.++++++|.|++-+|.+..
T Consensus 133 ~K~ei~~~a~~~gl~~~~~~~~~c 156 (202)
T cd01990 133 GKAEIRELARELGLPTWDKPAMAC 156 (202)
T ss_pred CHHHHHHHHHHcCCCCcCCCCcch
Confidence 566777777788888877776543
No 494
>PRK07775 short chain dehydrogenase; Provisional
Probab=33.51 E-value=81 Score=30.55 Aligned_cols=71 Identities=27% Similarity=0.312 Sum_probs=41.2
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCcC----C----CCCccccCCCCCCHHHHHHHHHH-----c
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGISN----S----GDATCIPDLDVLDGDAVISFCRK-----W 146 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~~----~----~~~~~v~~~d~~d~~~l~~~~~~-----~ 146 (519)
+++.++|+|++ +....+++.|.+. |++++.+..+...... . .....+ ..|..+.+.+.+++++ .
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~ 86 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAA-GFPVALGARRVEKCEELVDKIRADGGEAVAF-PLDVTDPDSVKSFVAQAEEALG 86 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE-ECCCCCHHHHHHHHHHHHHhcC
Confidence 34689999965 3456678888876 8876655432110000 0 011122 4677777777666654 2
Q ss_pred CCcEEEE
Q 010065 147 SVGLVVV 153 (519)
Q Consensus 147 ~id~Vi~ 153 (519)
++|++|-
T Consensus 87 ~id~vi~ 93 (274)
T PRK07775 87 EIEVLVS 93 (274)
T ss_pred CCCEEEE
Confidence 5788886
No 495
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=33.49 E-value=67 Score=32.08 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=27.4
Q ss_pred CccEEEEEeCChhHHHHHHHHHhcCCCcEEEEecC
Q 010065 81 QRVVVLVIGGGGREHALCYALKRSHSCDAVFCAPG 115 (519)
Q Consensus 81 ~~~~vliiG~g~~~~~l~~~l~~~~g~~~v~~~~~ 115 (519)
++++|+|+|.|.....+++.|.+. |+++.++..+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRS 37 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeC
Confidence 357999999998777788998876 8888877654
No 496
>PRK07035 short chain dehydrogenase; Provisional
Probab=33.35 E-value=62 Score=30.70 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=39.6
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcCCCcEEEEecCCCCCcCC--------CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSHSCDAVFCAPGNAGISNS--------GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~g~~~v~~~~~~~~~~~~--------~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
.++++|+|+++ ....++..|.+. |.+++.++.+....... .....+ ..|..+.+.+.+++++ .+
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~ 85 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQ-GAHVIVSSRKLDGCQAVADAIVAAGGKAEAL-ACHIGEMEQIDALFAHIRERHGR 85 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE-EcCCCCHHHHHHHHHHHHHHcCC
Confidence 46899999663 456678888776 88877765331110000 001122 4566666655544433 25
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|.++.
T Consensus 86 id~li~ 91 (252)
T PRK07035 86 LDILVN 91 (252)
T ss_pred CCEEEE
Confidence 888885
No 497
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=33.33 E-value=85 Score=31.42 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=40.4
Q ss_pred ccEEEEEeCCh-hHHHHHHHHHhcC-CCcEEEEecCCCCCc----CC--CCCccccCCCCCCHHHHHHHHHHcCCcEEEE
Q 010065 82 RVVVLVIGGGG-REHALCYALKRSH-SCDAVFCAPGNAGIS----NS--GDATCIPDLDVLDGDAVISFCRKWSVGLVVV 153 (519)
Q Consensus 82 ~~~vliiG~g~-~~~~l~~~l~~~~-g~~~v~~~~~~~~~~----~~--~~~~~v~~~d~~d~~~l~~~~~~~~id~Vi~ 153 (519)
.++|||+|+.| ....++..|.+.. +.+++.++.+..... .. .....+ ..|..|.+.+.++.+ ++|.||-
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v-~~Dl~d~~~l~~~~~--~iD~Vih 80 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFF-IGDVRDKERLTRALR--GVDYVVH 80 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEE-EccCCCHHHHHHHHh--cCCEEEE
Confidence 47899999754 4566788887662 255555543221110 00 011222 468888888777665 4898886
No 498
>PRK05872 short chain dehydrogenase; Provisional
Probab=33.31 E-value=92 Score=30.65 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=42.1
Q ss_pred CccEEEEEeCC-hhHHHHHHHHHhcCCCcEEEEecCCCCCc----CC---CCCccccCCCCCCHHHHHHHHHH-----cC
Q 010065 81 QRVVVLVIGGG-GREHALCYALKRSHSCDAVFCAPGNAGIS----NS---GDATCIPDLDVLDGDAVISFCRK-----WS 147 (519)
Q Consensus 81 ~~~~vliiG~g-~~~~~l~~~l~~~~g~~~v~~~~~~~~~~----~~---~~~~~v~~~d~~d~~~l~~~~~~-----~~ 147 (519)
+.++++|+|++ +....++..+.+. |.+++.++.+..... .. .....+ ..|..|.+.+.+++++ .+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~-~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHAR-GAKLALVDLEEAELAALAAELGGDDRVLTV-VADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcCCCcEEEE-EecCCCHHHHHHHHHHHHHHcCC
Confidence 34689999965 4556788888876 888776653311100 00 001111 3677777766665543 36
Q ss_pred CcEEEE
Q 010065 148 VGLVVV 153 (519)
Q Consensus 148 id~Vi~ 153 (519)
+|+++.
T Consensus 86 id~vI~ 91 (296)
T PRK05872 86 IDVVVA 91 (296)
T ss_pred CCEEEE
Confidence 899887
No 499
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=33.29 E-value=2e+02 Score=27.50 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=40.0
Q ss_pred ccEEEEEeCC---hhHHHHHHHHHhcCCCcEEEEecC-CCCC-----cCC----CCCccccCCCCCCHHHHHHHHHH---
Q 010065 82 RVVVLVIGGG---GREHALCYALKRSHSCDAVFCAPG-NAGI-----SNS----GDATCIPDLDVLDGDAVISFCRK--- 145 (519)
Q Consensus 82 ~~~vliiG~g---~~~~~l~~~l~~~~g~~~v~~~~~-~~~~-----~~~----~~~~~v~~~d~~d~~~l~~~~~~--- 145 (519)
.+.++|+|++ +...++++.+.+. |.++++.... +.+. ... .....+ ..|..|.+.+.+++++
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAA-GAELGITYLPDEKGRFEKKVRELTEPLNPSLFL-PCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHC-CCEEEEEecCcccchHHHHHHHHHhccCcceEe-ecCcCCHHHHHHHHHHHHH
Confidence 4678999963 5667788888877 8887665311 1000 000 011122 4677776666655543
Q ss_pred --cCCcEEEE
Q 010065 146 --WSVGLVVV 153 (519)
Q Consensus 146 --~~id~Vi~ 153 (519)
-++|.++.
T Consensus 84 ~~g~iD~lv~ 93 (258)
T PRK07370 84 KWGKLDILVH 93 (258)
T ss_pred HcCCCCEEEE
Confidence 25888776
No 500
>PRK03670 competence damage-inducible protein A; Provisional
Probab=33.25 E-value=4.3e+02 Score=25.59 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHH---cCCcEEEE-C-----CChhhHHHHHHHHHHCCCCeeCCcHHHHHHhcCHH
Q 010065 134 LDGDAVISFCRK---WSVGLVVV-G-----PEAPLVSGLANKLVKAGIPTFGPSSEAAALEGSKN 189 (519)
Q Consensus 134 ~d~~~l~~~~~~---~~id~Vi~-g-----~E~~~~~~~a~~le~~gip~~g~~~~~~~~~~dK~ 189 (519)
+|.+.|.+.+++ ...|+||+ | .+|.+.+.+ .+..|.++. .+.++.+...+++
T Consensus 44 Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD~T~eav---a~a~g~~l~-~~~e~~~~i~~~~ 104 (252)
T PRK03670 44 DDVEEIKSVVLEILSRKPEVLVISGGLGPTHDDVTMLAV---AEALGRELV-LCEDCLERIKEFY 104 (252)
T ss_pred CCHHHHHHHHHHHhhCCCCEEEECCCccCCCCCchHHHH---HHHhCCCCc-CCHHHHHHHHHHH
Confidence 344555555433 24799998 2 345544444 556788887 6788777766654
Done!