BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010067
(519 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/494 (76%), Positives = 423/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDVWWGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSL +L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAGELRYPSYP+SQGW FPGIGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNFTCLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE+I VAGENAL RYDATAYNQI+LNARP GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK L
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTL 481
Query: 489 PFPWDEETDMNVGG 502
PFPW ETDM V G
Sbjct: 482 PFPWLPETDMKVDG 495
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/494 (76%), Positives = 423/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDVWWGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSL +L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAG+LRYPSYP+SQGW FPGIGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGQLRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNFTCLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE+I VAGENAL RYDATAYNQI+LNARP GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK L
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTL 481
Query: 489 PFPWDEETDMNVGG 502
PFPW ETDM V G
Sbjct: 482 PFPWLPETDMKVDG 495
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/494 (76%), Positives = 423/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDVWWGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSL +L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAGELRYPSYP+SQGW FPGIGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNFTCLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE+I VAG+NAL RYDATAYNQI+LNARP GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREDIRVAGQNALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK L
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTL 481
Query: 489 PFPWDEETDMNVGG 502
PFPW ETDM V G
Sbjct: 482 PFPWLPETDMKVDG 495
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/494 (76%), Positives = 422/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDVWWGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSL +L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAGELRYPSYP+SQGW FPGIGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNF CLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFACLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE+I VAGENAL RYDATAYNQI+LNARP GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK L
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTL 481
Query: 489 PFPWDEETDMNVGG 502
PFPW ETDM V G
Sbjct: 482 PFPWLPETDMKVDG 495
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/494 (76%), Positives = 422/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDVWWGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSL +L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAGELRYPSYP+SQGW FPGIGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNF CLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFVCLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE+I VAGENAL RYDATAYNQI+LNARP GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK L
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTL 481
Query: 489 PFPWDEETDMNVGG 502
PFPW ETDM V G
Sbjct: 482 PFPWLPETDMKVDG 495
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/494 (76%), Positives = 422/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDVWWGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSL +L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAGELRYPSYP+SQGW FPGIGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ IL FTCLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILTFTCLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE+I VAGENAL RYDATAYNQI+LNARP GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK L
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTL 481
Query: 489 PFPWDEETDMNVGG 502
PFPW ETDM V G
Sbjct: 482 PFPWLPETDMKVDG 495
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/494 (76%), Positives = 423/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDVWWGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSLF+L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAGELRYPSYP+SQGW FP IGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGELRYPSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNFTCLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE+I VAGENAL RYDATAYNQI+LNA+P GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK L
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTL 481
Query: 489 PFPWDEETDMNVGG 502
PFPW ETDM V G
Sbjct: 482 PFPWLPETDMKVDG 495
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/494 (76%), Positives = 422/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+ VDVWWGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVTVDVWWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSL +L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAGELRYPSYP+SQGW FPGIGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNFTCLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE+I VAGENAL RYDATAYNQI+LNARP GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK L
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTL 481
Query: 489 PFPWDEETDMNVGG 502
PFPW ETDM V G
Sbjct: 482 PFPWLPETDMKVDG 495
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/494 (76%), Positives = 423/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDV WGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVRWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSLF+L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAGELRYPSYP+SQGW FPGIGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNFTCLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE+I VAGENAL RYDATAYNQI+LNARP GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK L
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTL 481
Query: 489 PFPWDEETDMNVGG 502
PFPW ETDM V G
Sbjct: 482 PFPWLPETDMKVDG 495
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/494 (76%), Positives = 422/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDVWWGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSL +L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDI VGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIYVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAGELRYPSYP+SQGW FPGIGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNFTCLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE+I VAGENAL RYDATAYNQI+LNARP GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK L
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTL 481
Query: 489 PFPWDEETDMNVGG 502
PFPW ETDM V G
Sbjct: 482 PFPWLPETDMKVDG 495
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/494 (76%), Positives = 422/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDVWWGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSL +L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAGELRYPSYP+SQGW FPGIGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNFTCLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE I VAGENAL RYDATAYNQI+LNARP GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTR 481
Query: 489 PFPWDEETDMNVGG 502
PFPW +ETDM V G
Sbjct: 482 PFPWLDETDMKVDG 495
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/494 (76%), Positives = 421/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDVWWGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSL +L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAGELRYPSYP+SQGW FPGIGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNFTCLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE I VAGENAL RYDATAYNQI+LNARP GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL S PK E L+EATK
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLSPSAPKIPIEVLLEATKPTR 481
Query: 489 PFPWDEETDMNVGG 502
PFPW +ETDM V G
Sbjct: 482 PFPWLDETDMKVDG 495
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/494 (76%), Positives = 422/494 (85%)
Query: 9 TYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIES 68
T D ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDVWWGIIE
Sbjct: 2 TSDSNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIEL 61
Query: 69 KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDI 128
KGP+QYDW AYRSL +L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DI
Sbjct: 62 KGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDI 121
Query: 129 FYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGL 188
FYTNRSG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGL
Sbjct: 122 FYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL 181
Query: 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDK 248
GPAGELRYPSYP+SQGW FPGIGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND
Sbjct: 182 GPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV 241
Query: 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHW 308
PEST FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLG KVKLA KVSGIHW
Sbjct: 242 PESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGXKVKLAIKVSGIHW 301
Query: 309 WYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQE 368
WY +NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNF+CLEMR+SEQ + AK GPQE
Sbjct: 302 WYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFSCLEMRDSEQPSDAKSGPQE 361
Query: 369 LVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRL 428
LVQQVLSGGWRE+I VAGENAL RYDATAYNQI+LNARP GVN GPPKL M+GVTYLRL
Sbjct: 362 LVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRL 421
Query: 429 SDDLLAENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLL 488
SDDLL ++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK L
Sbjct: 422 SDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTL 481
Query: 489 PFPWDEETDMNVGG 502
PFPW ETDM V G
Sbjct: 482 PFPWLPETDMKVDG 495
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/489 (76%), Positives = 421/489 (86%)
Query: 14 MLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQ 73
ML NYVP+YVMLPLGV+ DNV ED D L+ QL +L+AAGVDG+MVDVWWGIIE KGP+Q
Sbjct: 3 MLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQ 62
Query: 74 YDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNR 133
YDW AYRSLF+L+Q+ L LQAIMSFHQCGGNVGD+V IPIP+WVL+IGE+N DIFYTNR
Sbjct: 63 YDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNR 122
Query: 134 SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGE 193
SG RNKEYLT+GVD++P+F GRTAIEIYSDYMKSFR+NM DFLE+G+IIDIEVGLGPAGE
Sbjct: 123 SGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGE 182
Query: 194 LRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDKPESTE 253
LRYPSYP+SQGW FP IGEFQCYDKYLKA+FK A +GHPEWELPD+AG YND PEST
Sbjct: 183 LRYPSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTG 242
Query: 254 FFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLAD 313
FFK+NGTY++E+G FFLTWYSNKL+ HGD+ILDEANKAFLGCKVKLA KVSGIHWWY +
Sbjct: 243 FFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 302
Query: 314 NHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQV 373
NHAAELTAGYYNLNDRDGYRPIAR+LSRH+ ILNFTCLEMR+SEQ + AK GPQELVQQV
Sbjct: 303 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQV 362
Query: 374 LSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRLSDDLL 433
LSGGWRE+I VAGENAL RYDATAYNQI+LNA+P GVN GPPKL M+GVTYLRLSDDLL
Sbjct: 363 LSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLL 422
Query: 434 AENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLLPFPWD 493
++N MHADQDYC +PQKYNH I PL+ S PK E L+EATK LPFPW
Sbjct: 423 QKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTLPFPWL 482
Query: 494 EETDMNVGG 502
ETDM V G
Sbjct: 483 PETDMKVDG 491
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/488 (66%), Positives = 394/488 (80%), Gaps = 5/488 (1%)
Query: 17 NYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDW 76
NYV +YVMLPLGV+ DNV DK+K+E +LK++KA G DG+MVDVWWGIIE+KGP+QYDW
Sbjct: 11 NYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDW 70
Query: 77 SAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGN 136
SAYR LF+L+++ LK+QAIMSFHQCGGNVGD V IPIP+W+L+IG+ NPDIFYTNR+GN
Sbjct: 71 SAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGN 130
Query: 137 RNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRY 196
RN+EYL++GVD++ LF GRTA+E+Y D+M+SFR NM DFL+AG I+DIEVG G AGELRY
Sbjct: 131 RNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAGELRY 190
Query: 197 PSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELP-DNAGTYNDKPESTEFF 255
PSYPE+QGWVFPGIGEFQCYDKY+ A++KEA +G+ +WE+P AGTYND P+ TEFF
Sbjct: 191 PSYPETQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPGKGAGTYNDTPDKTEFF 250
Query: 256 KTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNH 315
+ NGTY ++ G FFLTWYSNKL+ HGD++L+EANK F+G +V +AAKVSGIHWWY +H
Sbjct: 251 RPNGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSH 310
Query: 316 AAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLS 375
AAELTAG+YN+ RDGYRPIAR+L+RH+ LNFTCLEMR+SEQ A AK PQELVQQVLS
Sbjct: 311 AAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLS 370
Query: 376 GGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRLSDDLLAE 435
GW+E I+VAGENAL RYDATAYNQ+LL RPNGVN GPPKL+M G+TYLRLSDDLL
Sbjct: 371 SGWKEYIDVAGENALPRYDATAYNQMLLKLRPNGVNLNGPPKLKMSGLTYLRLSDDLLQT 430
Query: 436 NNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKLLPFPWDEE 495
+N MHAD D P P + + LERS + +ELMEATK PFPW +
Sbjct: 431 DNFELFKKFVKKMHADLD--PSPNAISPAV--LERSNSAITIDELMEATKGSRPFPWYDV 486
Query: 496 TDMNVGGT 503
TDM V G+
Sbjct: 487 TDMPVDGS 494
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/502 (61%), Positives = 381/502 (75%), Gaps = 5/502 (0%)
Query: 17 NYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDW 76
NYV +YVMLPL ++ +N E D+L +QL++L AGVDG+MVDVWWG++E KGP+ YDW
Sbjct: 8 NYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDW 67
Query: 77 SAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGN 136
SAY+ LFEL+Q+ LKLQAIMSFHQCGGNVGD V IPIP+WV ++G +PDIFYT+ G
Sbjct: 68 SAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGT 127
Query: 137 RNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRY 196
RN EYLT+GVD++PLF GR+A+++Y+DYM SFR+NM +FL+AGVI+DIEVGLGPAGE+RY
Sbjct: 128 RNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRY 187
Query: 197 PSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDKPESTEFFK 256
PSYP+S GW FPGIGEF CYDKYL+A+FK AA A GHPEWE P++ G YND PE T+FF+
Sbjct: 188 PSYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEFPNDVGQYNDTPERTQFFR 247
Query: 257 TNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNHA 316
NGTYLSE+G FFL WYSN L+ HGD ILDEANK FLG KV+LA K+SGIHWWY +HA
Sbjct: 248 DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHA 307
Query: 317 AELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSG 376
AELTAGYYNL+DRDGYR IAR+L RH +NFTC EMR+SEQ + A P+ELVQQVLS
Sbjct: 308 AELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSA 367
Query: 377 GWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRLSDDLLAEN 436
GWRE + VA ENAL RYD TAYN IL NARP+G+N+ GPP+ +++G TYLRLS+ L+
Sbjct: 368 GWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQ 427
Query: 437 NXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATK-KLLPFPWDEE 495
N MHA+ P Y + PL RS P+ S E +++A + KL PFP+ E
Sbjct: 428 NYANFKTFVDRMHANLPRDP----YVDPMAPLPRSGPEISIEMILQAAQPKLQPFPFQEH 483
Query: 496 TDMNVGGTRGILAALFGKIFSM 517
TD+ VG T G+ G M
Sbjct: 484 TDLPVGPTGGMGGQAEGPTCGM 505
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/494 (62%), Positives = 380/494 (76%), Gaps = 5/494 (1%)
Query: 14 MLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQ 73
M NYV +YVMLPL ++ +N E D+L +QL++L AGVDG+MVDVWWG++E KGP+
Sbjct: 1 MKGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKA 60
Query: 74 YDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNR 133
YDWSAY+ LFEL+Q+ LKLQAIMSFHQCGGNVGD V IPIP+WV ++G +PDIFYT+
Sbjct: 61 YDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDG 120
Query: 134 SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGE 193
G RN EYLT+GVD++PLF GR+A+++Y+DYM SFR+NM DFL+AGVI+DIEVGLGPAGE
Sbjct: 121 HGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGE 180
Query: 194 LRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDKPESTE 253
LRYPSYP+S GW FPGIGEF CYDKYL+A+FK AA A GHPEWE P++AG YND PE T+
Sbjct: 181 LRYPSYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEFPNDAGQYNDTPERTQ 240
Query: 254 FFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLAD 313
FF+ NGTYLSE+G FFL WYSN L+ HGD ILDEANK FLG KV+LA K++G+HWWY
Sbjct: 241 FFRDNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKIAGVHWWYKVP 300
Query: 314 NHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQV 373
+HAAELTAGYYNL+DRDGYR IAR+L RH +NFTC EMR+SEQ A P+ELVQQV
Sbjct: 301 SHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQPPDAMSAPEELVQQV 360
Query: 374 LSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRLSDDLL 433
LS GWRE + V+ ENAL RYD TAYN IL NARP+G+N+ GPP+ +++G TYLRLS+ L+
Sbjct: 361 LSAGWREGLNVSCENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLV 420
Query: 434 AENNXXXXXXXXXXMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATK-KLLPFPW 492
N MHA+ P Y + PL RS P+ S E +++A + K+ PFP+
Sbjct: 421 EGQNYVNFKTFVDRMHANLPRDP----YVDPMAPLPRSGPEISIEMILQAAQPKIQPFPF 476
Query: 493 DEETDMNVGGTRGI 506
E TD+ VG T G+
Sbjct: 477 QEHTDLPVGPTGGM 490
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 139/417 (33%), Positives = 198/417 (47%), Gaps = 44/417 (10%)
Query: 23 VMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSL 82
VM PL I D + QL+ LK GV I DVWWG +ES G Q+DWS Y++
Sbjct: 10 VMGPLAKI------NDWGSFKKQLQTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTY 63
Query: 83 FELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYL 142
+++ LK I+S H+CGGNVGD IP+P W+ G + ++ + + SG N E L
Sbjct: 64 ANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSAD-EMQFKDESGYANSEAL 122
Query: 143 TIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPES 202
+ PL+ G + Y + SF +N + +I I + GP+GELRYPSY +
Sbjct: 123 S------PLWSGTG--KQYDELYASFAENFAGYKS--IIPKIYLSGGPSGELRYPSYYPA 172
Query: 203 QGWVFPGIGEFQCYDKYLKAEFKEA------ATASGHPEWELPDNAGTYNDKPESTEFFK 256
GW +PG G+FQ Y + K F+ A + + W + + + P + F
Sbjct: 173 AGWSYPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINAAWGTKLTSLSQINPPTDGDGFY 232
Query: 257 TNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGC-KVKLAAKVSGIHWWY--LAD 313
TNG Y S G FL+WY + L H I A+K F V++ AK+SG+HW A
Sbjct: 233 TNGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLHWQMNNPAM 292
Query: 314 NHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQV 373
H E GYY+ N R I + L FTCLEM +S A P LV V
Sbjct: 293 PHGTEQAGGYYDYN-----RLIQKFKDADLD-LTFTCLEMSDSGT-APNYSLPSTLVDTV 345
Query: 374 LSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNKEGPPKLRMYGVTYLRLSD 430
S + + + GENAL + + +I +E K +G T LR+++
Sbjct: 346 SSIANAKGVRLNGENALPT-GGSGFQKI----------EEKITKFGYHGFTLLRINN 391
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 131/397 (32%), Positives = 192/397 (48%), Gaps = 31/397 (7%)
Query: 14 MLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQ 73
M P+Y Y+M PL I + + + E+ L+ K G IMVD WWG +E G +Q
Sbjct: 7 MNPDY-KAYLMAPLKKIPE---VTNWETFENDLRWAKQNGFYAIMVDFWWGDMEKNGDQQ 62
Query: 74 YDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNR 133
+D+S + + ++ +K+ I+S HQCGGNVGD +PIP WV +++ +++ +
Sbjct: 63 FDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSE 121
Query: 134 SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGE 193
+G NKE L PL E Y + +F M + + VI IE+ GPAGE
Sbjct: 122 TGTVNKETLN------PLASDVIRKE-YGELYTAFAAAMKPYKD--VIAKIELSGGPAGE 172
Query: 194 LRYPSYPESQGWVFPGIGEFQCYDKYLKAEF------KEAATASGHPEWELPDNAGTYND 247
LRYPSY S G +P G+FQ Y ++ K++F K + + W +
Sbjct: 173 LRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL 232
Query: 248 KPESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAF-LGCKVKLAAKVSGI 306
P E F NG YLS G +L WY L H I + A+ AF +V + AK++G+
Sbjct: 233 PPSDGEQFLMNG-YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGV 291
Query: 307 HWWYLADN--HAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKC 364
HW Y H AE AGY ND Y + +NFTCLEM + +
Sbjct: 292 HWQYNNPTIPHGAEKPAGY---ND---YSHLLDAFKSAKLDVNFTCLEMTD-KGSYPEYS 344
Query: 365 GPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQI 401
P+ LVQ + + + I + GENALS + Y ++
Sbjct: 345 MPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRV 381
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 190/397 (47%), Gaps = 31/397 (7%)
Query: 14 MLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQ 73
M P+Y Y+M PL I + + + E+ L+ K G I VD WWG +E G +Q
Sbjct: 7 MNPDY-KAYLMAPLKKIPE---VTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQ 62
Query: 74 YDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNR 133
+D+S + + ++ +K+ I+S HQCGGNVGD +PIP WV +++ +++ +
Sbjct: 63 FDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSE 121
Query: 134 SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGE 193
+G NKE L PL E Y + +F M + + VI IE+ GPAGE
Sbjct: 122 TGTVNKETLN------PLASDVIRKE-YGELYTAFAAAMKPYKD--VIAKIELSGGPAGE 172
Query: 194 LRYPSYPESQGWVFPGIGEFQCYDKYLKAEF------KEAATASGHPEWELPDNAGTYND 247
LRYPSY S G +P G+FQ Y ++ K++F K + + W +
Sbjct: 173 LRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL 232
Query: 248 KPESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAF-LGCKVKLAAKVSGI 306
P E F NG YLS G +L WY L H I + A+ AF +V + AK++G+
Sbjct: 233 PPSDGEQFLMNG-YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGV 291
Query: 307 HWWYLADN--HAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKC 364
HW Y H AE AGY ND Y + + FTCLEM + +
Sbjct: 292 HWQYNNPTIPHGAEKPAGY---ND---YSHLLDAFKSAKLDVTFTCLEMTD-KGSYPEYS 344
Query: 365 GPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQI 401
P+ LVQ + + + I + GENALS + Y ++
Sbjct: 345 MPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRV 381
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/397 (32%), Positives = 189/397 (47%), Gaps = 31/397 (7%)
Query: 14 MLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQ 73
M P+Y Y+M PL I + + + E+ L+ K G I VD WWG +E G +Q
Sbjct: 7 MNPDY-KAYLMAPLKKIPE---VTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQ 62
Query: 74 YDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNR 133
+D+S + + ++ +K+ I+S HQCGGNVGD +PIP WV +++ +++ +
Sbjct: 63 FDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSE 121
Query: 134 SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGE 193
+G NKE L PL E Y + +F M + + VI I + GPAGE
Sbjct: 122 TGTVNKETLN------PLASDVIRKE-YGELYTAFAAAMKPYKD--VIAKIYLSGGPAGE 172
Query: 194 LRYPSYPESQGWVFPGIGEFQCYDKYLKAEF------KEAATASGHPEWELPDNAGTYND 247
LRYPSY S G +P G+FQ Y ++ K++F K + + W +
Sbjct: 173 LRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL 232
Query: 248 KPESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAF-LGCKVKLAAKVSGI 306
P E F NG YLS G +L WY L H I + A+ AF +V + AK++G+
Sbjct: 233 PPSDGEQFLMNG-YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGV 291
Query: 307 HWWYLADN--HAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKC 364
HW Y H AE AGY ND Y + + FTCLEM + +
Sbjct: 292 HWQYNNPTIPHGAEKPAGY---ND---YSHLLDAFKSAKLDVTFTCLEMTD-KGSYPEYS 344
Query: 365 GPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQI 401
P+ LVQ + + + I + GENALS + Y ++
Sbjct: 345 MPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRV 381
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/397 (32%), Positives = 189/397 (47%), Gaps = 31/397 (7%)
Query: 14 MLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQ 73
M P+Y Y+M PL I + + + E+ L+ K G I VD WWG +E G +Q
Sbjct: 7 MNPDY-KAYLMAPLKKIPE---VTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQ 62
Query: 74 YDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNR 133
+D+S + + ++ +K+ I+S HQCGGNVGD +PIP WV +++ +++ +
Sbjct: 63 FDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSE 121
Query: 134 SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGE 193
+G NKE L PL E Y + +F M + + VI I + GPAGE
Sbjct: 122 TGTVNKETLN------PLASDVIRKE-YGELYTAFAAAMKPYKD--VIAKIFLSGGPAGE 172
Query: 194 LRYPSYPESQGWVFPGIGEFQCYDKYLKAEF------KEAATASGHPEWELPDNAGTYND 247
LRYPSY S G +P G+FQ Y ++ K++F K + + W +
Sbjct: 173 LRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL 232
Query: 248 KPESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAF-LGCKVKLAAKVSGI 306
P E F NG YLS G +L WY L H I + A+ AF +V + AK++G+
Sbjct: 233 PPSDGEQFLMNG-YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGV 291
Query: 307 HWWYLADN--HAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKC 364
HW Y H AE AGY ND Y + + FTCLEM + +
Sbjct: 292 HWQYNNPTIPHGAEKPAGY---ND---YSHLLDAFKSAKLDVTFTCLEMTD-KGSYPEYS 344
Query: 365 GPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQI 401
P+ LVQ + + + I + GENALS + Y ++
Sbjct: 345 MPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRV 381
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 188/397 (47%), Gaps = 31/397 (7%)
Query: 14 MLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQ 73
M P+Y Y+M PL I + + + E+ L+ K G I VD WWG +E G +Q
Sbjct: 7 MNPDY-KAYLMAPLKKIPE---VTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQ 62
Query: 74 YDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNR 133
+D+S + + ++ +K+ I+S HQCGGNVGD +PIP WV +++ +++ +
Sbjct: 63 FDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSE 121
Query: 134 SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGE 193
+G NKE L PL E Y + +F M + + VI I + GPAG
Sbjct: 122 TGTVNKETLN------PLASDVIRKE-YGELYTAFAAAMKPYKD--VIAKIYLSGGPAGA 172
Query: 194 LRYPSYPESQGWVFPGIGEFQCYDKYLKAEF------KEAATASGHPEWELPDNAGTYND 247
LRYPSY S G +P G+FQ Y ++ K++F K + + W +
Sbjct: 173 LRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAIL 232
Query: 248 KPESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAF-LGCKVKLAAKVSGI 306
P E F NG YLS G +L WY L H I + A+ AF +V + AK++G+
Sbjct: 233 PPSDGEQFLMNG-YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGV 291
Query: 307 HWWYLADN--HAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKC 364
HW Y H AE AGY ND Y + + FTCLEM + +
Sbjct: 292 HWQYNNPTIPHGAEKPAGY---ND---YSHLLDAFKSAKLDVTFTCLEMTD-KGSYPEYS 344
Query: 365 GPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQI 401
P+ LVQ + + + I + GENALS + Y ++
Sbjct: 345 MPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRV 381
>pdb|3MA2|B Chain B, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
pdb|3MA2|C Chain C, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
Length = 125
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 85 LIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTI 144
L Q+YE+K+ + Q G+ D+ + P G Y +RS NR++E+L
Sbjct: 34 LYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCG-------YFHRSHNRSEEFLIA 86
Query: 145 G 145
G
Sbjct: 87 G 87
>pdb|1OO9|B Chain B, Orientation In Solution Of Mmp-3 Catalytic Domain And N-
Timp-1 From Residual Dipolar Couplings
pdb|2J0T|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|E Chain E, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|F Chain F, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|1D2B|A Chain A, The Mmp-Inhibitory, N-Terminal Domain Of Human Tissue
Inhibitor Of Metalloproteinases-1 (N-Timp-1), Solution
Nmr, 29 Structures
Length = 126
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 85 LIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTI 144
L Q+YE+K+ + Q G+ D+ + P G Y +RS NR++E+L
Sbjct: 34 LYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCG-------YFHRSHNRSEEFLIA 86
Query: 145 G 145
G
Sbjct: 87 G 87
>pdb|4A3Q|A Chain A, The 2.15 Angstrom Resolution Crystal Structure Of
Staphylococcus Aureus Alanine Racemase
pdb|4A3Q|B Chain B, The 2.15 Angstrom Resolution Crystal Structure Of
Staphylococcus Aureus Alanine Racemase
Length = 382
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 75 DWSAYRSLFELIQQYE-LKLQAIMSFHQCGGNVGDVVT 111
D + Y+ + E+IQQYE L + + + C GD+ T
Sbjct: 143 DTNTYQEVIEIIQQYEQLVFEGVFTHFACADEPGDMTT 180
>pdb|3OO2|A Chain A, 2.37 Angstrom Resolution Crystal Structure Of An Alanine
Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus
Col
pdb|3OO2|B Chain B, 2.37 Angstrom Resolution Crystal Structure Of An Alanine
Racemase (Alr) From Staphylococcus Aureus Subsp. Aureus
Col
Length = 385
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 75 DWSAYRSLFELIQQYE-LKLQAIMSFHQCGGNVGDVVT 111
D Y+ + E+IQQYE L + + + C GD+ T
Sbjct: 146 DTKTYQEVIEIIQQYEQLVFEGVFTHFACADEPGDMTT 183
>pdb|1J0M|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
pdb|1J0N|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
Length = 752
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 276 KLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNHAAELTAGYY 324
KL GD AN A L + +A ++G++W +LA N A GYY
Sbjct: 516 KLNGAGDNAW-TANGAALSTGLGVAQTLTGVNWVHLAGNTADGSDIGYY 563
>pdb|2E22|A Chain A, Crystal Structure Of Xanthan Lyase In Complex With Mannose
Length = 752
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 276 KLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNHAAELTAGYY 324
KL GD AN A L + +A ++G++W +LA N A GYY
Sbjct: 516 KLNGAGDNAW-TANGAALSTGLGVAQTLTGVNWVHLAGNTADGSDIGYY 563
>pdb|1X1H|A Chain A, Crystal Structure Of Xanthan Lyase (N194a)
pdb|1X1I|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) Complexed With
A Product
pdb|1X1J|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) With A
Substrate
Length = 752
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 276 KLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNHAAELTAGYY 324
KL GD AN A L + +A ++G++W +LA N A GYY
Sbjct: 516 KLNGAGDNAW-TANGAALSTGLGVAQTLTGVNWVHLAGNTADGSDIGYY 563
>pdb|2E24|A Chain A, Crystal Structure Of A Mutant (R612a) Of Xanthan Lyase
Length = 752
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 276 KLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNHAAELTAGYY 324
KL GD AN A L + +A ++G++W +LA N A GYY
Sbjct: 516 KLNGAGDNAW-TANGAALSTGLGVAQTLTGVNWVHLAGNTADGSDIGYY 563
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,866,935
Number of Sequences: 62578
Number of extensions: 761328
Number of successful extensions: 1674
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1615
Number of HSP's gapped (non-prelim): 33
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)