Query 010067
Match_columns 519
No_of_seqs 147 out of 209
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 20:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02801 beta-amylase 100.0 5E-212 1E-216 1650.0 51.7 512 8-519 5-517 (517)
2 PLN02803 beta-amylase 100.0 3E-191 6E-196 1498.5 46.0 460 12-487 79-541 (548)
3 PLN00197 beta-amylase; Provisi 100.0 9E-189 2E-193 1482.9 44.5 457 11-471 98-566 (573)
4 PLN02905 beta-amylase 100.0 7E-188 2E-192 1487.5 45.3 447 2-454 248-698 (702)
5 PLN02705 beta-amylase 100.0 9E-187 2E-191 1475.9 45.3 446 1-452 229-676 (681)
6 PLN02161 beta-amylase 100.0 5E-185 1E-189 1445.4 45.3 435 10-452 83-531 (531)
7 PF01373 Glyco_hydro_14: Glyco 100.0 1E-164 2E-169 1271.6 30.1 391 22-444 1-402 (402)
8 PF02449 Glyco_hydro_42: Beta- 99.9 4.2E-22 9.2E-27 204.8 6.7 210 38-306 8-238 (374)
9 COG1874 LacA Beta-galactosidas 99.5 2.4E-13 5.1E-18 150.9 15.7 198 38-293 28-250 (673)
10 PF01301 Glyco_hydro_35: Glyco 98.7 5.2E-08 1.1E-12 100.2 10.4 118 38-186 22-146 (319)
11 PLN03059 beta-galactosidase; P 98.4 2.1E-06 4.5E-11 98.1 11.8 141 38-232 57-213 (840)
12 TIGR03356 BGL beta-galactosida 97.6 0.00017 3.7E-09 77.1 8.1 112 35-186 49-164 (427)
13 PF00150 Cellulase: Cellulase 97.4 0.00063 1.4E-08 65.7 8.8 59 41-101 22-84 (281)
14 KOG0496 Beta-galactosidase [Ca 97.3 0.0024 5.3E-08 71.6 12.3 84 37-132 46-135 (649)
15 PF00232 Glyco_hydro_1: Glycos 97.1 0.0017 3.7E-08 69.9 8.5 101 36-176 54-158 (455)
16 smart00633 Glyco_10 Glycosyl h 96.9 0.035 7.6E-07 55.2 15.7 193 63-356 3-195 (254)
17 PRK09852 cryptic 6-phospho-bet 96.8 0.0054 1.2E-07 66.9 9.1 112 36-186 67-183 (474)
18 PF14871 GHL6: Hypothetical gl 96.7 0.026 5.6E-07 51.9 11.4 109 43-174 3-121 (132)
19 PRK15014 6-phospho-beta-glucos 96.4 0.01 2.2E-07 64.8 8.2 110 38-187 67-182 (477)
20 PF02638 DUF187: Glycosyl hydr 96.2 0.48 1E-05 49.2 18.8 231 35-349 14-258 (311)
21 PLN02814 beta-glucosidase 96.0 0.024 5.2E-07 62.4 8.8 111 36-186 73-188 (504)
22 PRK13511 6-phospho-beta-galact 95.9 0.022 4.8E-07 62.0 7.9 111 35-186 49-163 (469)
23 PLN02998 beta-glucosidase 95.7 0.035 7.5E-07 61.2 8.4 111 36-186 78-193 (497)
24 PLN02849 beta-glucosidase 95.6 0.042 9.2E-07 60.6 8.7 112 35-186 74-190 (503)
25 TIGR01233 lacG 6-phospho-beta- 95.6 0.024 5.2E-07 61.7 6.6 111 35-186 48-162 (467)
26 PRK09589 celA 6-phospho-beta-g 95.4 0.052 1.1E-06 59.4 8.4 112 35-186 62-179 (476)
27 PRK09593 arb 6-phospho-beta-gl 95.4 0.058 1.3E-06 59.1 8.6 112 35-186 68-185 (478)
28 PF00331 Glyco_hydro_10: Glyco 95.3 0.26 5.7E-06 51.0 12.9 213 45-359 26-249 (320)
29 COG2723 BglB Beta-glucosidase/ 94.3 0.53 1.2E-05 51.8 12.5 149 34-230 53-206 (460)
30 COG3693 XynA Beta-1,4-xylanase 93.1 0.96 2.1E-05 48.0 11.2 119 56-230 59-183 (345)
31 PF01229 Glyco_hydro_39: Glyco 91.9 0.26 5.5E-06 53.8 5.6 99 39-174 38-147 (486)
32 PF07745 Glyco_hydro_53: Glyco 91.4 0.36 7.8E-06 50.9 5.9 54 43-101 27-80 (332)
33 cd03465 URO-D_like The URO-D _ 91.3 1.1 2.4E-05 45.4 9.2 118 42-173 170-298 (330)
34 PF14488 DUF4434: Domain of un 89.9 1.1 2.4E-05 42.6 7.3 58 38-99 18-85 (166)
35 cd00465 URO-D_CIMS_like The UR 88.1 0.85 1.8E-05 45.7 5.4 115 41-171 145-273 (306)
36 PF10566 Glyco_hydro_97: Glyco 87.5 0.62 1.3E-05 48.0 4.0 80 41-145 107-186 (273)
37 COG3867 Arabinogalactan endo-1 86.5 4 8.6E-05 43.4 9.1 56 43-100 66-125 (403)
38 PRK01060 endonuclease IV; Prov 85.5 1.6 3.5E-05 43.2 5.7 58 24-93 1-63 (281)
39 PF03659 Glyco_hydro_71: Glyco 84.5 2.4 5.2E-05 45.6 6.8 55 38-101 15-69 (386)
40 PRK11572 copper homeostasis pr 84.0 2.1 4.6E-05 43.7 5.8 72 17-99 50-124 (248)
41 TIGR01463 mtaA_cmuA methyltran 83.5 1.9 4.1E-05 44.4 5.3 58 43-104 183-243 (340)
42 PF03932 CutC: CutC family; I 82.9 1.9 4.1E-05 42.7 4.8 67 16-93 48-117 (201)
43 cd06592 GH31_glucosidase_KIAA1 82.5 14 0.00031 38.0 11.2 83 37-135 27-116 (303)
44 cd03308 CmuA_CmuC_like CmuA_Cm 80.2 2.9 6.2E-05 44.4 5.4 80 19-104 173-278 (378)
45 TIGR02104 pulA_typeI pullulana 79.3 23 0.00049 40.1 12.3 63 41-103 165-256 (605)
46 PRK02412 aroD 3-dehydroquinate 79.2 18 0.00039 36.5 10.4 114 41-194 96-211 (253)
47 PF00128 Alpha-amylase: Alpha 78.2 4.2 9.1E-05 39.4 5.4 63 40-105 4-81 (316)
48 PF01055 Glyco_hydro_31: Glyco 77.0 8.6 0.00019 41.0 7.8 85 37-137 40-134 (441)
49 PLN02229 alpha-galactosidase 76.2 4.6 9.9E-05 44.3 5.6 76 31-107 68-160 (427)
50 cd06593 GH31_xylosidase_YicI Y 75.3 15 0.00033 37.5 8.8 88 36-137 20-114 (308)
51 COG1649 Uncharacterized protei 75.3 59 0.0013 35.9 13.5 155 33-226 57-227 (418)
52 PF08821 CGGC: CGGC domain; I 74.2 11 0.00024 33.8 6.6 56 39-100 51-107 (107)
53 PRK13209 L-xylulose 5-phosphat 74.1 6.9 0.00015 38.8 5.8 67 25-96 8-76 (283)
54 KOG0626 Beta-glucosidase, lact 74.0 12 0.00027 42.1 8.2 68 40-119 91-163 (524)
55 PLN02361 alpha-amylase 73.9 9.7 0.00021 41.3 7.3 65 39-106 28-106 (401)
56 TIGR03234 OH-pyruv-isom hydrox 73.6 17 0.00037 35.5 8.4 42 41-94 15-56 (254)
57 TIGR00433 bioB biotin syntheta 73.3 8.4 0.00018 38.6 6.3 55 43-99 123-180 (296)
58 PRK13111 trpA tryptophan synth 72.8 14 0.00031 37.7 7.8 89 18-137 89-178 (258)
59 TIGR00542 hxl6Piso_put hexulos 72.2 7.4 0.00016 38.8 5.5 55 39-96 15-71 (279)
60 cd00502 DHQase_I Type I 3-dehy 72.0 46 0.00099 32.6 10.9 49 41-104 77-125 (225)
61 smart00642 Aamy Alpha-amylase 72.0 19 0.00041 34.1 7.9 68 37-104 16-97 (166)
62 PF01261 AP_endonuc_2: Xylose 71.3 3.6 7.9E-05 37.7 2.9 46 46-96 1-46 (213)
63 PRK09856 fructoselysine 3-epim 69.9 11 0.00024 37.2 6.1 51 41-98 14-68 (275)
64 cd03307 Mta_CmuA_like MtaA_Cmu 69.7 7.6 0.00016 39.9 5.1 55 44-104 175-232 (326)
65 PHA00442 host recBCD nuclease 69.6 4.7 0.0001 32.7 2.8 27 44-89 30-56 (59)
66 PRK10658 putative alpha-glucos 69.3 32 0.0007 39.7 10.4 87 38-138 281-374 (665)
67 PF02065 Melibiase: Melibiase; 69.2 10 0.00022 41.1 6.2 79 38-120 56-145 (394)
68 TIGR01515 branching_enzym alph 69.0 9.6 0.00021 43.2 6.1 55 39-99 155-228 (613)
69 cd03311 CIMS_C_terminal_like C 68.7 11 0.00023 38.9 6.0 95 40-136 155-252 (332)
70 COG2730 BglC Endoglucanase [Ca 67.4 22 0.00049 38.2 8.3 109 43-192 76-193 (407)
71 cd04724 Tryptophan_synthase_al 66.6 37 0.00081 33.9 9.2 63 18-99 76-138 (242)
72 PF01487 DHquinase_I: Type I 3 66.5 78 0.0017 30.8 11.2 120 31-194 65-188 (224)
73 PRK06252 methylcobalamin:coenz 65.8 6.7 0.00015 40.3 3.8 56 43-104 183-241 (339)
74 TIGR02402 trehalose_TreZ malto 65.2 12 0.00027 41.8 6.0 59 40-103 111-186 (542)
75 cd00717 URO-D Uroporphyrinogen 64.6 12 0.00025 38.7 5.3 75 44-134 181-260 (335)
76 PRK13210 putative L-xylulose 5 64.0 17 0.00036 35.9 6.1 53 40-96 16-71 (284)
77 PLN02389 biotin synthase 63.7 17 0.00037 39.1 6.5 45 43-93 178-229 (379)
78 cd03309 CmuC_like CmuC_like. P 63.6 8.2 0.00018 40.4 4.0 56 45-104 160-222 (321)
79 CHL00200 trpA tryptophan synth 63.2 63 0.0014 33.2 10.2 91 18-139 91-182 (263)
80 PRK10785 maltodextrin glucosid 62.5 77 0.0017 36.0 11.6 155 38-230 177-362 (598)
81 cd06602 GH31_MGAM_SI_GAA This 62.0 78 0.0017 33.3 10.9 93 35-138 19-120 (339)
82 PRK12313 glycogen branching en 61.4 14 0.00031 41.8 5.7 55 39-99 169-242 (633)
83 PRK09989 hypothetical protein; 61.0 21 0.00045 35.3 6.1 42 41-94 16-57 (258)
84 PLN02808 alpha-galactosidase 60.7 16 0.00034 39.7 5.6 57 38-94 47-114 (386)
85 cd07944 DRE_TIM_HOA_like 4-hyd 60.5 69 0.0015 32.6 9.9 76 43-138 85-165 (266)
86 PF01026 TatD_DNase: TatD rela 60.3 65 0.0014 32.0 9.5 46 42-100 16-62 (255)
87 PRK00115 hemE uroporphyrinogen 60.2 16 0.00034 38.1 5.4 76 43-134 189-269 (346)
88 PRK04302 triosephosphate isome 59.7 21 0.00045 35.1 5.8 48 43-100 75-122 (223)
89 PF13653 GDPD_2: Glycerophosph 58.2 9.8 0.00021 27.2 2.4 18 43-60 10-27 (30)
90 TIGR03217 4OH_2_O_val_ald 4-hy 57.2 54 0.0012 34.7 8.7 92 43-173 90-186 (333)
91 cd06604 GH31_glucosidase_II_Ma 56.9 1.1E+02 0.0024 31.9 10.9 86 35-136 19-113 (339)
92 PF01791 DeoC: DeoC/LacD famil 56.5 7.5 0.00016 38.3 2.2 53 43-96 79-131 (236)
93 PF01208 URO-D: Uroporphyrinog 56.0 17 0.00036 37.3 4.7 57 43-104 185-244 (343)
94 PRK13398 3-deoxy-7-phosphohept 55.4 49 0.0011 34.0 7.9 70 26-100 27-99 (266)
95 cd02742 GH20_hexosaminidase Be 55.1 1.9E+02 0.0041 29.8 12.1 125 33-174 9-182 (303)
96 TIGR01464 hemE uroporphyrinoge 54.8 22 0.00047 36.8 5.3 75 44-134 184-263 (338)
97 COG3142 CutC Uncharacterized p 54.8 18 0.0004 37.0 4.6 173 17-229 50-240 (241)
98 cd06591 GH31_xylosidase_XylS X 54.7 1.8E+02 0.0039 30.2 12.0 87 37-138 21-115 (319)
99 TIGR02102 pullulan_Gpos pullul 53.8 24 0.00052 43.2 6.1 61 39-99 479-577 (1111)
100 cd06565 GH20_GcnA-like Glycosy 53.3 1.6E+02 0.0035 30.5 11.3 65 34-98 11-81 (301)
101 cd06564 GH20_DspB_LnbB-like Gl 53.0 1.4E+02 0.0031 31.0 10.9 133 33-174 10-191 (326)
102 PRK09997 hydroxypyruvate isome 52.6 28 0.00061 34.3 5.5 41 41-93 16-56 (258)
103 PRK10933 trehalose-6-phosphate 52.3 1.8E+02 0.0039 32.8 12.3 65 36-103 29-107 (551)
104 PRK07360 FO synthase subunit 2 52.0 13 0.00028 39.5 3.2 52 43-99 163-223 (371)
105 TIGR02403 trehalose_treC alpha 51.0 44 0.00095 37.4 7.3 66 36-103 23-101 (543)
106 PLN02877 alpha-amylase/limit d 50.8 27 0.00059 42.1 5.8 53 44-98 377-485 (970)
107 PRK05222 5-methyltetrahydropte 50.7 24 0.00052 41.3 5.3 82 40-132 581-667 (758)
108 PLN02692 alpha-galactosidase 50.5 28 0.00061 38.2 5.5 56 38-93 71-137 (412)
109 PF05706 CDKN3: Cyclin-depende 50.5 11 0.00024 36.7 2.2 66 20-93 26-103 (168)
110 PLN02591 tryptophan synthase 50.2 80 0.0017 32.3 8.4 89 18-137 78-167 (250)
111 cd06599 GH31_glycosidase_Aec37 49.9 77 0.0017 32.9 8.4 86 39-136 28-120 (317)
112 PRK09441 cytoplasmic alpha-amy 49.8 38 0.00083 37.0 6.5 66 39-104 21-108 (479)
113 PF00290 Trp_syntA: Tryptophan 49.8 1.4E+02 0.0031 30.7 10.2 90 16-136 85-175 (259)
114 PF14307 Glyco_tran_WbsX: Glyc 49.4 3.1E+02 0.0067 28.9 12.8 30 35-64 53-82 (345)
115 TIGR01093 aroD 3-dehydroquinat 48.8 44 0.00096 32.9 6.2 110 45-195 83-194 (228)
116 TIGR02456 treS_nterm trehalose 48.2 51 0.0011 36.7 7.2 66 36-104 24-103 (539)
117 PRK12595 bifunctional 3-deoxy- 48.1 61 0.0013 34.8 7.5 65 34-100 126-190 (360)
118 PF10566 Glyco_hydro_97: Glyco 47.6 50 0.0011 34.4 6.5 64 38-103 30-97 (273)
119 PRK10150 beta-D-glucuronidase; 47.4 3.2E+02 0.007 30.8 13.4 45 37-95 310-354 (604)
120 cd01299 Met_dep_hydrolase_A Me 47.3 54 0.0012 33.2 6.7 64 36-103 116-182 (342)
121 TIGR02631 xylA_Arthro xylose i 47.3 24 0.00051 38.0 4.3 53 38-95 30-86 (382)
122 TIGR02884 spore_pdaA delta-lac 46.9 63 0.0014 31.8 6.9 82 333-431 142-223 (224)
123 PRK04326 methionine synthase; 46.6 36 0.00079 35.0 5.4 78 40-134 161-239 (330)
124 PF05226 CHASE2: CHASE2 domain 45.3 2.4E+02 0.0052 28.6 10.9 96 38-143 62-163 (310)
125 TIGR03699 mena_SCO4550 menaqui 45.2 19 0.00041 37.3 3.1 53 43-99 143-203 (340)
126 cd00958 DhnA Class I fructose- 45.1 49 0.0011 32.3 5.8 65 38-108 74-138 (235)
127 PRK06256 biotin synthase; Vali 44.9 27 0.00058 36.1 4.1 46 43-94 152-204 (336)
128 TIGR03551 F420_cofH 7,8-dideme 44.8 18 0.00039 37.8 2.9 57 43-99 141-201 (343)
129 PRK09875 putative hydrolase; P 44.3 81 0.0017 32.9 7.5 68 33-119 27-94 (292)
130 TIGR00262 trpA tryptophan synt 44.2 60 0.0013 33.0 6.5 87 26-137 89-176 (256)
131 PF02836 Glyco_hydro_2_C: Glyc 44.0 45 0.00098 33.7 5.5 50 36-99 32-81 (298)
132 PLN00196 alpha-amylase; Provis 43.7 66 0.0014 35.2 7.1 63 39-104 43-119 (428)
133 PRK12858 tagatose 1,6-diphosph 43.3 57 0.0012 34.8 6.3 55 41-95 107-161 (340)
134 PRK08508 biotin synthase; Prov 43.2 30 0.00064 35.3 4.1 51 43-99 102-159 (279)
135 PRK03906 mannonate dehydratase 42.6 36 0.00079 36.9 4.8 51 45-99 15-65 (385)
136 TIGR03849 arch_ComA phosphosul 41.9 56 0.0012 33.5 5.7 48 40-95 71-118 (237)
137 cd01310 TatD_DNAse TatD like p 41.9 2E+02 0.0044 27.4 9.4 46 42-100 17-62 (251)
138 PLN02475 5-methyltetrahydropte 41.8 46 0.00099 39.2 5.8 83 40-133 586-673 (766)
139 PF01717 Meth_synt_2: Cobalami 41.6 56 0.0012 33.7 5.9 86 40-137 154-245 (324)
140 smart00854 PGA_cap Bacterial c 41.3 71 0.0015 31.5 6.3 56 38-100 158-213 (239)
141 TIGR00695 uxuA mannonate dehyd 41.2 44 0.00096 36.5 5.2 51 45-99 15-65 (394)
142 cd06600 GH31_MGAM-like This fa 41.1 2.4E+02 0.0053 29.3 10.4 83 36-136 20-113 (317)
143 PF14587 Glyco_hydr_30_2: O-Gl 40.7 1.2E+02 0.0025 33.3 8.2 74 69-174 93-169 (384)
144 PRK09936 hypothetical protein; 40.3 56 0.0012 34.6 5.6 53 38-99 36-94 (296)
145 PRK14706 glycogen branching en 40.2 58 0.0013 37.5 6.2 55 38-99 165-237 (639)
146 cd07943 DRE_TIM_HOA 4-hydroxy- 40.1 1.2E+02 0.0027 30.4 7.9 91 44-173 89-184 (263)
147 PRK07094 biotin synthase; Prov 40.0 40 0.00086 34.6 4.5 56 43-99 129-187 (323)
148 PLN02433 uroporphyrinogen deca 39.9 45 0.00098 34.9 4.9 77 44-134 183-262 (345)
149 PRK08195 4-hyroxy-2-oxovalerat 39.5 72 0.0016 33.8 6.4 90 44-172 92-186 (337)
150 TIGR00423 radical SAM domain p 39.3 31 0.00067 35.5 3.6 56 42-97 106-165 (309)
151 PRK00957 methionine synthase; 37.8 1.1E+02 0.0023 31.4 7.2 80 40-137 144-224 (305)
152 PRK09505 malS alpha-amylase; R 37.8 70 0.0015 37.3 6.4 62 38-99 228-314 (683)
153 PLN02960 alpha-amylase 37.6 72 0.0016 38.4 6.5 55 38-99 414-486 (897)
154 PF14488 DUF4434: Domain of un 37.0 1.8E+02 0.004 27.7 8.1 139 54-230 1-150 (166)
155 TIGR02103 pullul_strch alpha-1 36.8 45 0.00098 40.0 4.8 23 44-66 290-314 (898)
156 PRK08445 hypothetical protein; 36.8 40 0.00086 35.7 4.0 57 43-99 144-204 (348)
157 COG5561 Predicted metal-bindin 36.5 94 0.002 27.9 5.5 55 40-101 42-99 (101)
158 TIGR03700 mena_SCO4494 putativ 36.4 36 0.00078 35.8 3.6 53 43-99 150-210 (351)
159 PLN03231 putative alpha-galact 36.2 59 0.0013 35.1 5.1 56 38-93 16-102 (357)
160 PRK05402 glycogen branching en 36.2 70 0.0015 37.2 6.1 57 38-99 263-337 (726)
161 COG1856 Uncharacterized homolo 35.9 73 0.0016 33.0 5.4 56 43-100 100-161 (275)
162 PF09184 PPP4R2: PPP4R2; Inte 35.7 9.5 0.00021 39.7 -0.8 30 422-451 97-127 (288)
163 PRK15108 biotin synthase; Prov 34.7 59 0.0013 34.4 4.9 45 43-93 136-187 (345)
164 PRK06520 5-methyltetrahydropte 34.4 71 0.0015 34.1 5.4 67 40-107 170-247 (368)
165 PRK08883 ribulose-phosphate 3- 33.9 2.4E+02 0.0052 28.1 8.7 110 38-166 10-127 (220)
166 cd03174 DRE_TIM_metallolyase D 33.8 1.2E+02 0.0026 29.6 6.6 58 43-102 77-141 (265)
167 cd06603 GH31_GANC_GANAB_alpha 33.5 3.7E+02 0.008 28.2 10.4 88 36-137 20-114 (339)
168 PRK13125 trpA tryptophan synth 33.4 1E+02 0.0022 30.9 6.0 48 42-100 90-137 (244)
169 PRK15452 putative protease; Pr 33.3 43 0.00093 36.9 3.7 39 17-60 58-96 (443)
170 PF04187 DUF399: Protein of un 32.9 33 0.00071 33.9 2.5 20 74-93 86-105 (213)
171 PF01902 ATP_bind_4: ATP-bindi 32.8 59 0.0013 32.5 4.3 60 332-391 123-182 (218)
172 TIGR01371 met_syn_B12ind 5-met 32.6 73 0.0016 37.4 5.5 83 40-132 575-661 (750)
173 cd06597 GH31_transferase_CtsY 32.5 2.2E+02 0.0047 30.1 8.6 63 36-100 20-106 (340)
174 cd06568 GH20_SpHex_like A subg 32.3 6.2E+02 0.013 26.7 11.8 66 33-98 11-96 (329)
175 COG1809 (2R)-phospho-3-sulfola 32.2 86 0.0019 32.4 5.2 46 40-93 90-135 (258)
176 COG1082 IolE Sugar phosphate i 32.1 76 0.0017 30.9 4.9 48 39-93 14-61 (274)
177 PF02126 PTE: Phosphotriestera 31.9 1.1E+02 0.0025 32.0 6.3 63 38-119 36-98 (308)
178 TIGR03679 arCOG00187 arCOG0018 31.7 87 0.0019 31.0 5.2 60 332-391 124-183 (218)
179 PF02679 ComA: (2R)-phospho-3- 31.6 61 0.0013 33.3 4.2 87 17-120 66-152 (244)
180 PRK12331 oxaloacetate decarbox 31.5 1.2E+02 0.0025 33.7 6.6 51 39-99 95-145 (448)
181 cd07381 MPP_CapA CapA and rela 31.3 1.6E+02 0.0034 28.9 6.9 56 38-100 160-215 (239)
182 smart00518 AP2Ec AP endonuclea 31.2 1.2E+02 0.0027 29.8 6.2 51 41-93 11-61 (273)
183 TIGR02026 BchE magnesium-proto 31.1 1.3E+02 0.0027 33.4 6.8 52 43-99 287-345 (497)
184 PRK15108 biotin synthase; Prov 31.1 5.8E+02 0.012 27.1 11.5 56 37-99 76-131 (345)
185 cd06563 GH20_chitobiase-like T 31.0 6.6E+02 0.014 26.6 11.9 66 33-98 11-107 (357)
186 TIGR00419 tim triosephosphate 30.6 1E+02 0.0023 30.6 5.5 46 44-99 72-117 (205)
187 PF01183 Glyco_hydro_25: Glyco 30.5 1.4E+02 0.003 28.0 6.1 106 46-174 12-117 (181)
188 TIGR01768 GGGP-family geranylg 30.3 3.9E+02 0.0084 27.2 9.5 103 43-192 17-119 (223)
189 COG0620 MetE Methionine syntha 30.1 1.1E+02 0.0025 32.4 6.1 64 40-109 158-227 (330)
190 COG3250 LacZ Beta-galactosidas 30.0 1.5E+02 0.0033 35.3 7.6 46 34-93 315-360 (808)
191 PLN02447 1,4-alpha-glucan-bran 30.0 1E+02 0.0022 36.5 6.2 60 38-102 248-326 (758)
192 PRK14511 maltooligosyl trehalo 30.0 1.5E+02 0.0034 35.7 7.6 63 40-103 20-95 (879)
193 PRK06233 hypothetical protein; 29.9 1.1E+02 0.0023 32.9 5.8 68 40-107 171-249 (372)
194 COG1099 Predicted metal-depend 29.6 37 0.00079 35.0 2.2 55 44-100 15-73 (254)
195 TIGR03822 AblA_like_2 lysine-2 29.5 3E+02 0.0064 28.8 8.9 111 44-178 188-300 (321)
196 PRK12677 xylose isomerase; Pro 29.1 1.2E+02 0.0026 32.7 6.1 48 41-93 32-83 (384)
197 cd00019 AP2Ec AP endonuclease 29.0 1.6E+02 0.0035 29.2 6.6 52 40-93 10-62 (279)
198 PF01136 Peptidase_U32: Peptid 28.8 5.3E+02 0.012 25.0 10.0 132 18-176 36-200 (233)
199 PRK08673 3-deoxy-7-phosphohept 28.7 1.5E+02 0.0033 31.7 6.7 65 29-100 96-165 (335)
200 COG1619 LdcA Uncharacterized p 28.6 1.6E+02 0.0034 31.4 6.7 94 28-130 14-107 (313)
201 PF05378 Hydant_A_N: Hydantoin 28.3 1.1E+02 0.0025 29.3 5.2 45 38-90 132-176 (176)
202 PTZ00445 p36-lilke protein; Pr 28.1 1.4E+02 0.0031 30.4 6.0 60 34-93 23-94 (219)
203 TIGR02401 trehalose_TreY malto 28.0 1.7E+02 0.0038 35.0 7.6 63 40-103 16-91 (825)
204 cd03310 CIMS_like CIMS - Cobal 27.9 2E+02 0.0044 29.2 7.2 58 41-104 152-211 (321)
205 PF04476 DUF556: Protein of un 27.9 67 0.0015 32.9 3.7 44 46-93 137-183 (235)
206 TIGR03056 bchO_mg_che_rel puta 27.8 2.2E+02 0.0047 26.9 7.0 77 301-382 11-94 (278)
207 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.7 1.7E+02 0.0036 29.9 6.6 81 38-136 89-174 (275)
208 cd08560 GDPD_EcGlpQ_like_1 Gly 27.7 74 0.0016 34.1 4.2 49 42-94 247-295 (356)
209 smart00481 POLIIIAc DNA polyme 27.5 1.8E+02 0.004 22.8 5.5 42 42-94 17-58 (67)
210 COG2352 Ppc Phosphoenolpyruvat 27.5 53 0.0011 39.2 3.3 49 54-109 558-612 (910)
211 PRK13210 putative L-xylulose 5 26.8 1.2E+02 0.0025 30.0 5.1 59 40-100 94-154 (284)
212 cd08627 PI-PLCc_gamma1 Catalyt 26.8 58 0.0013 33.3 3.0 58 32-92 22-85 (229)
213 PRK02227 hypothetical protein; 26.0 74 0.0016 32.7 3.7 46 44-93 135-183 (238)
214 PRK13397 3-deoxy-7-phosphohept 25.8 2.1E+02 0.0046 29.5 6.9 66 33-100 22-87 (250)
215 PRK05926 hypothetical protein; 25.6 68 0.0015 34.5 3.5 58 42-99 168-229 (370)
216 cd07939 DRE_TIM_NifV Streptomy 25.4 3.1E+02 0.0067 27.5 7.9 82 43-136 72-164 (259)
217 cd07491 Peptidases_S8_7 Peptid 25.3 3.5E+02 0.0076 27.1 8.3 71 38-117 87-159 (247)
218 TIGR00010 hydrolase, TatD fami 25.3 1.7E+02 0.0038 27.9 5.9 46 42-100 17-62 (252)
219 PRK08508 biotin synthase; Prov 25.2 2.3E+02 0.005 28.9 7.1 53 37-95 40-93 (279)
220 PRK14507 putative bifunctional 25.1 3.3E+02 0.0072 35.3 9.6 65 38-103 756-833 (1693)
221 TIGR02764 spore_ybaN_pdaB poly 25.1 2.1E+02 0.0045 26.9 6.3 80 333-430 110-189 (191)
222 TIGR00677 fadh2_euk methylenet 25.0 1.9E+02 0.004 29.9 6.4 70 42-123 147-225 (281)
223 COG4130 Predicted sugar epimer 24.9 1.7E+02 0.0036 30.4 5.8 67 16-90 94-164 (272)
224 PRK00042 tpiA triosephosphate 24.9 1.1E+02 0.0025 31.2 4.8 46 44-99 77-126 (250)
225 PF01136 Peptidase_U32: Peptid 24.9 68 0.0015 31.1 3.1 40 40-99 2-43 (233)
226 PLN02784 alpha-amylase 24.7 1.5E+02 0.0032 35.9 6.2 63 39-104 520-596 (894)
227 TIGR00539 hemN_rel putative ox 24.6 1.6E+02 0.0035 30.9 6.0 52 43-99 100-159 (360)
228 PF01261 AP_endonuc_2: Xylose 24.6 71 0.0015 29.2 3.0 60 39-100 70-133 (213)
229 cd04871 ACT_PSP_2 ACT domains 24.2 79 0.0017 26.7 3.0 35 349-387 49-83 (84)
230 cd06413 GH25_muramidase_1 Unch 24.1 2E+02 0.0044 27.4 6.1 51 45-102 16-66 (191)
231 COG0407 HemE Uroporphyrinogen- 24.0 1.5E+02 0.0032 32.1 5.6 59 43-104 192-251 (352)
232 cd03319 L-Ala-DL-Glu_epimerase 23.9 97 0.0021 31.7 4.1 58 35-108 236-294 (316)
233 PRK03705 glycogen debranching 23.7 99 0.0021 35.9 4.5 54 45-102 184-268 (658)
234 COG0149 TpiA Triosephosphate i 23.7 1.2E+02 0.0027 31.3 4.7 45 45-99 80-128 (251)
235 PF14542 Acetyltransf_CG: GCN5 23.6 18 0.0004 30.2 -1.0 21 79-99 44-64 (78)
236 PRK04175 rpl7ae 50S ribosomal 23.3 1.9E+02 0.004 26.5 5.4 44 330-384 33-76 (122)
237 TIGR03471 HpnJ hopanoid biosyn 23.2 1.9E+02 0.0042 31.5 6.4 52 43-99 287-345 (472)
238 cd08592 PI-PLCc_gamma Catalyti 23.1 74 0.0016 32.4 3.0 58 32-92 22-85 (229)
239 PF03786 UxuA: D-mannonate deh 23.1 50 0.0011 35.6 1.9 51 45-99 16-67 (351)
240 PRK12568 glycogen branching en 23.1 2E+02 0.0044 34.0 6.9 57 38-99 267-341 (730)
241 TIGR00542 hxl6Piso_put hexulos 23.1 1.5E+02 0.0033 29.5 5.2 58 41-100 95-154 (279)
242 cd02809 alpha_hydroxyacid_oxid 23.0 6.7E+02 0.015 25.7 10.0 129 38-176 127-286 (299)
243 cd06589 GH31 The enzymes of gl 22.8 2.1E+02 0.0046 28.7 6.2 71 36-123 20-99 (265)
244 COG2876 AroA 3-deoxy-D-arabino 22.8 1.7E+02 0.0038 30.8 5.6 54 38-91 227-282 (286)
245 PRK14040 oxaloacetate decarbox 22.8 2.2E+02 0.0048 32.7 7.0 51 39-99 96-146 (593)
246 TIGR00289 conserved hypothetic 22.8 1.5E+02 0.0032 29.9 5.0 64 335-399 126-192 (222)
247 cd08212 RuBisCO_large_I Ribulo 22.7 1.6E+02 0.0034 32.9 5.6 52 38-100 224-275 (450)
248 PRK09121 5-methyltetrahydropte 22.6 1.3E+02 0.0029 31.7 4.9 60 40-107 156-216 (339)
249 PF06336 Corona_5a: Coronaviru 22.3 76 0.0016 26.2 2.4 22 260-281 2-23 (65)
250 PRK09997 hydroxypyruvate isome 22.3 2.4E+02 0.0051 27.8 6.4 56 40-100 85-145 (258)
251 TIGR02100 glgX_debranch glycog 22.2 1.3E+02 0.0028 35.1 5.0 59 45-103 189-272 (688)
252 PRK05799 coproporphyrinogen II 22.2 1.6E+02 0.0034 31.0 5.3 45 43-92 99-150 (374)
253 TIGR01949 AroFGH_arch predicte 22.1 1.4E+02 0.0031 29.9 4.8 51 42-96 92-142 (258)
254 PRK14705 glycogen branching en 21.9 1.6E+02 0.0035 36.7 6.0 53 40-99 765-835 (1224)
255 PRK08005 epimerase; Validated 21.8 98 0.0021 30.9 3.6 44 38-89 11-56 (210)
256 PRK09240 thiH thiamine biosynt 21.6 1.8E+02 0.004 31.0 5.8 46 43-93 163-219 (371)
257 TIGR03234 OH-pyruv-isom hydrox 21.5 2E+02 0.0044 28.0 5.7 57 40-100 84-144 (254)
258 cd00530 PTE Phosphotriesterase 21.2 2.3E+02 0.0049 28.3 6.0 57 35-101 27-83 (293)
259 PF00070 Pyr_redox: Pyridine n 21.2 2.7E+02 0.0058 22.5 5.4 47 334-386 13-59 (80)
260 PF00834 Ribul_P_3_epim: Ribul 21.1 89 0.0019 30.8 3.1 141 38-229 10-158 (201)
261 cd06594 GH31_glucosidase_YihQ 21.1 8.4E+02 0.018 25.4 10.4 86 38-137 21-120 (317)
262 COG2342 Predicted extracellula 20.9 1.7E+02 0.0037 31.1 5.2 64 40-106 126-197 (300)
263 PRK10426 alpha-glucosidase; Pr 20.8 4.1E+02 0.0089 30.7 8.6 87 39-137 220-317 (635)
264 COG1060 ThiH Thiamine biosynth 20.7 1.4E+02 0.0031 32.2 4.8 58 42-99 160-221 (370)
265 COG0159 TrpA Tryptophan syntha 20.6 3.8E+02 0.0083 28.0 7.6 76 39-138 108-184 (265)
266 cd07382 MPP_DR1281 Deinococcus 20.6 3.1E+02 0.0067 28.1 6.9 50 38-101 126-175 (255)
267 smart00729 Elp3 Elongator prot 20.5 3.9E+02 0.0084 24.0 6.9 55 43-98 100-158 (216)
268 TIGR00290 MJ0570_dom MJ0570-re 20.5 1.8E+02 0.0038 29.4 5.1 69 332-400 123-194 (223)
269 PTZ00170 D-ribulose-5-phosphat 20.3 1.1E+02 0.0024 30.5 3.5 45 38-90 17-63 (228)
270 TIGR02351 thiH thiazole biosyn 20.3 1.8E+02 0.0039 30.9 5.4 46 43-93 162-218 (366)
271 PLN02899 alpha-galactosidase 20.2 1.6E+02 0.0034 34.3 5.1 54 48-105 60-137 (633)
272 TIGR03677 rpl7ae 50S ribosomal 20.1 2.4E+02 0.0051 25.5 5.3 44 330-384 29-72 (117)
No 1
>PLN02801 beta-amylase
Probab=100.00 E-value=5.5e-212 Score=1650.03 Aligned_cols=512 Identities=78% Similarity=1.351 Sum_probs=503.6
Q ss_pred cccccccCCCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHH
Q 010067 8 LTYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQ 87 (519)
Q Consensus 8 ~~~~~~~~~~~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~ 87 (519)
.....++..++||||||||||+|+++|+|+++++++++|++||++||||||||||||+||+++|++|||++|++||+|||
T Consensus 5 ~~~~~~~~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr 84 (517)
T PLN02801 5 TTYEEKMLANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQ 84 (517)
T ss_pred ccccccccCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEEeeeccCCCCCCcccccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHH
Q 010067 88 QYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKS 167 (519)
Q Consensus 88 ~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~s 167 (519)
++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||+|+|||+|
T Consensus 85 ~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~S 164 (517)
T PLN02801 85 SFGLKIQAIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKS 164 (517)
T ss_pred HcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccceEEEEeeccCCCCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 010067 168 FRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYND 247 (519)
Q Consensus 168 F~~~f~~~l~~~~I~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDky~~~~f~~~a~~~gn~~WG~p~~ag~yn~ 247 (519)
||++|++||++++|+||+|||||||||||||||++.||+||||||||||||||+++||++|+++||++||+|+|+|+||+
T Consensus 165 Fr~~F~~~l~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~P~dag~Yn~ 244 (517)
T PLN02801 165 FRENMADFLEAGVIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKADFKEAATEAGHPEWELPDDAGEYND 244 (517)
T ss_pred HHHHHHHhccCCeeEEEEEcccccccccCCCCcCCCCCCCCCcceeeeccHHHHHHHHHHHHhcCCcccCCCCCCCcccC
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecceeecccCCCchhhhhhcccCCC
Q 010067 248 KPESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNHAAELTAGYYNLN 327 (519)
Q Consensus 248 ~P~~t~FF~~~g~~~s~YGrFFL~WYs~~L~~Hgdril~~A~~~F~g~~v~l~aKv~GIHWwy~t~SHaAElTAGyYN~~ 327 (519)
+|++|+||+++|+|+|+||||||+|||++|++||||||++|+++|++++|+|+||||||||||+|+||||||||||||++
T Consensus 245 ~P~~t~FF~~~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~~ 324 (517)
T PLN02801 245 TPEDTGFFKSNGTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNLK 324 (517)
T ss_pred CCCCCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecCCCCchHhhccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeeeccccccCChhHHHHHHHHhCC
Q 010067 328 DRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARP 407 (519)
Q Consensus 328 ~rdGY~~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~ 407 (519)
+||||+|||+|||||+|+|+||||||+|++||++++|+||+||+||+++||++||+|+|||||+|||+++|+||++|+++
T Consensus 325 ~rDGY~pIa~m~~rh~~~l~FTClEM~D~eq~~~~~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a~~ 404 (517)
T PLN02801 325 GRDGYRPIARMLSRHYGILNFTCLEMRDTEQPAEALSAPQELVQQVLSGAWREGIEVAGENALSRYDRRGYNQILLNARP 404 (517)
T ss_pred CccchHHHHHHHHHcCCeEEEeecccccCCCCcccCCCHHHHHHHHHHHHHHcCCcEeeeccccccCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcceeEEecccccccCccchhHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCCCCChHHHHHHccCC
Q 010067 408 NGVNKEGPPKLRMYGVTYLRLSDDLLAENNFKIFKIFVKKMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKL 487 (519)
Q Consensus 408 ~g~~~~g~~~~~~~~FTylRm~~~lf~~~n~~~F~~FV~~m~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 487 (519)
++++.+|++..+|++||||||++.||+++||++|++|||+||+++++|++|++|.|++.||+||+|+++||+|+|||+|+
T Consensus 405 ~~~~~~g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 484 (517)
T PLN02801 405 NGVNKDGKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHADQDYCPDPAKYGHEIVPLERSNPEISIEDILEATEPV 484 (517)
T ss_pred ccCCcccccccceeeEEEecCchHhcCcchHHHHHHHHHHhccccccCCChhhcCCCCCccccCCCcccHHHHHHhcCCC
Confidence 99888899888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCc-cchhhHhhhhhcccCC
Q 010067 488 LPFPWDEETDMNVGGT-RGILAALFGKIFSMFK 519 (519)
Q Consensus 488 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 519 (519)
+||||++||||+|+|+ .+++..++.+|.++|.
T Consensus 485 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 517 (517)
T PLN02801 485 PPFPWDKETDMSVDGGLAELLDSVLDKIESIFL 517 (517)
T ss_pred CCCCCCCccccccCcccchhHHHHHHhhHHhhC
Confidence 9999999999999997 7888999999999874
No 2
>PLN02803 beta-amylase
Probab=100.00 E-value=3e-191 Score=1498.48 Aligned_cols=460 Identities=47% Similarity=0.905 Sum_probs=447.5
Q ss_pred cccCCCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCC
Q 010067 12 EKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYEL 91 (519)
Q Consensus 12 ~~~~~~~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GL 91 (519)
.+...++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||
T Consensus 79 ~~~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GL 158 (548)
T PLN02803 79 HSKNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGL 158 (548)
T ss_pred ccccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeeeccCCCCCCcccccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHH
Q 010067 92 KLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKN 171 (519)
Q Consensus 92 Kv~~imsfHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~ 171 (519)
|||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||+|+|||+|||++
T Consensus 159 Klq~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~ 238 (548)
T PLN02803 159 KLQVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRER 238 (548)
T ss_pred eEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccceEEEEeeccCCCCCCCCCCCCCCC-CccCCCcccccccHHHHHHHHHHHHhcCCCCCCC--CCCCCCCCCC
Q 010067 172 MFDFLEAGVIIDIEVGLGPAGELRYPSYPESQG-WVFPGIGEFQCYDKYLKAEFKEAATASGHPEWEL--PDNAGTYNDK 248 (519)
Q Consensus 172 f~~~l~~~~I~eI~VGlGP~GELRYPSyp~~~g-W~~pGiGEFQCYDky~~~~f~~~a~~~gn~~WG~--p~~ag~yn~~ 248 (519)
|++||+ ++|+||+|||||||||||||||+..| |+||||||||||||||+++||++|+++||++||+ |+|+|+||++
T Consensus 239 F~~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~ 317 (548)
T PLN02803 239 FKDYLG-GVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQF 317 (548)
T ss_pred HHHHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCC
Confidence 999997 79999999999999999999999998 9999999999999999999999999999999997 9999999999
Q ss_pred CCCCccccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecceeecccCCCchhhhhhcccCCCC
Q 010067 249 PESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNHAAELTAGYYNLND 328 (519)
Q Consensus 249 P~~t~FF~~~g~~~s~YGrFFL~WYs~~L~~Hgdril~~A~~~F~g~~v~l~aKv~GIHWwy~t~SHaAElTAGyYN~~~ 328 (519)
|++|+||+++|+|+|+||||||+|||++|++||||||+.|+++|++++|+|++|||||||||+|+|||||||||||||++
T Consensus 318 P~~t~FF~~~G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~ 397 (548)
T PLN02803 318 PEETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRN 397 (548)
T ss_pred CCCCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecCCCCchhhhccccccCCC
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeeeccccccCChhHHHHHHHHhCCC
Q 010067 329 RDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPN 408 (519)
Q Consensus 329 rdGY~~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~ 408 (519)
||||+|||+|||||+|+|+||||||+|+|||++++|+||+||+||+++||++||+|+|||||+|||.++|+||+++++++
T Consensus 398 rdGY~~Ia~mf~rh~~~l~FTClEM~D~eqp~~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~~ 477 (548)
T PLN02803 398 HDGYLPIARMFSKHGVVLNFTCMEMRDGEQPEHANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRSD 477 (548)
T ss_pred cccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCceeeeccccccCHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCcceeEEecccccccCccchhHHHHHHHHhccCCCCCCCCCCCCCCCCcccccCCCCChHHHHHHccCC
Q 010067 409 GVNKEGPPKLRMYGVTYLRLSDDLLAENNFKIFKIFVKKMHADQDYCPDPQKYNHEIDPLERSKPKFSNEELMEATKKL 487 (519)
Q Consensus 409 g~~~~g~~~~~~~~FTylRm~~~lf~~~n~~~F~~FV~~m~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 487 (519)
+. .++++||||||++.||+++||++|++|||+||+++++ |++.|++++++++.++.|+..+++.
T Consensus 478 ~~-------~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (548)
T PLN02803 478 SG-------NGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGRN--------RRLPECDTEGSDLYVGFIKDKDAEK 541 (548)
T ss_pred cc-------CceeeeEEecCChHHcChhhHHHHHHHHHHhcCcccc--------CccchhhccCccchhhhhcccchhh
Confidence 42 2499999999999999999999999999999998874 7899999999999999998777663
No 3
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=9.4e-189 Score=1482.92 Aligned_cols=457 Identities=48% Similarity=0.924 Sum_probs=433.9
Q ss_pred ccccCCCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcC
Q 010067 11 DEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYE 90 (519)
Q Consensus 11 ~~~~~~~~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~G 90 (519)
.+++..++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++|
T Consensus 98 ~~~~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~G 177 (573)
T PLN00197 98 GTKEKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHG 177 (573)
T ss_pred cccccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeeeccCCCCCCcccccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHH
Q 010067 91 LKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRK 170 (519)
Q Consensus 91 LKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~ 170 (519)
||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||+|+|||+|||+
T Consensus 178 LKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~ 257 (573)
T PLN00197 178 LKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRD 257 (573)
T ss_pred CeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccceEEEEeeccCCCCCCCCCCCCCCC-CccCCCcccccccHHHHHHHHHHHHhcCCCCCCC--CCCCCCCCC
Q 010067 171 NMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQG-WVFPGIGEFQCYDKYLKAEFKEAATASGHPEWEL--PDNAGTYND 247 (519)
Q Consensus 171 ~f~~~l~~~~I~eI~VGlGP~GELRYPSyp~~~g-W~~pGiGEFQCYDky~~~~f~~~a~~~gn~~WG~--p~~ag~yn~ 247 (519)
+|++||+ ++|+||+|||||||||||||||+..| |+||||||||||||||+++||++|+++||++||+ |+|+|+||+
T Consensus 258 ~F~~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Yn~ 336 (573)
T PLN00197 258 NFKHLLG-DTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHYNN 336 (573)
T ss_pred HHHHHhc-CceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhCCHhhcCCCCCCccccCC
Confidence 9999998 69999999999999999999999998 9999999999999999999999999999999996 999999999
Q ss_pred CCCCCccccC-CCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecceeecccCCCchhhhhhcccCC
Q 010067 248 KPESTEFFKT-NGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNHAAELTAGYYNL 326 (519)
Q Consensus 248 ~P~~t~FF~~-~g~~~s~YGrFFL~WYs~~L~~Hgdril~~A~~~F~g~~v~l~aKv~GIHWwy~t~SHaAElTAGyYN~ 326 (519)
.|++|+||++ +|+|+|+||||||+|||++|++||||||+.|+.+|++++|+|++|||||||||+|+||||||||||||+
T Consensus 337 ~P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIHWwY~t~SHAAELTAGyYNt 416 (573)
T PLN00197 337 WPEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIHWHYGTRSHAPELTAGYYNT 416 (573)
T ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccceeecCCCCchHhhccccccC
Confidence 9999999994 689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeeeccccccCChhHHHHHHHHhC
Q 010067 327 NDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNAR 406 (519)
Q Consensus 327 ~~rdGY~~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~ 406 (519)
++||||+|||+|||||||+|+||||||+|++||++++|+||+||+||+++||++||+|+|||||+|||.++|+||++|++
T Consensus 417 ~~rDGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~PE~Lv~QV~~aA~~~Gv~vaGENAL~r~D~~~~~qI~~~~~ 496 (573)
T PLN00197 417 RFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALATREAEVPLAGENALPRYDDYAHEQILQASS 496 (573)
T ss_pred CCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCcEeeeccccccChhHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCCC-CCCCcceeEEecccccccCccchhHHHHHHHHhccCCC--CCCCCC-----CCCCCCCccccc
Q 010067 407 PNGVNKEGP-PKLRMYGVTYLRLSDDLLAENNFKIFKIFVKKMHADQD--YCPDPQ-----KYNHEIDPLERS 471 (519)
Q Consensus 407 ~~g~~~~g~-~~~~~~~FTylRm~~~lf~~~n~~~F~~FV~~m~~~~~--~~~~~~-----~~~~~~~p~~~~ 471 (519)
.. + ++. ...++++||||||++.||+++||++|++|||+||++.. .|++.. -+.+.+.|+.++
T Consensus 497 ~~-~--~~~~~~~~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 566 (573)
T PLN00197 497 LN-I--DGNSEDREMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKDSHRCREQVEREAEHFVHVTRPLVQE 566 (573)
T ss_pred cc-c--CCCcccCceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCCCCCccchhcchhcccceecchhhHHH
Confidence 43 2 222 23569999999999999999999999999999999855 366542 244555555443
No 4
>PLN02905 beta-amylase
Probab=100.00 E-value=7.3e-188 Score=1487.50 Aligned_cols=447 Identities=50% Similarity=0.914 Sum_probs=436.0
Q ss_pred CCCCcccccccccCCCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHH
Q 010067 2 QASPAALTYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRS 81 (519)
Q Consensus 2 ~~~~~~~~~~~~~~~~~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~ 81 (519)
.|+|+.+++.......+||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~ 327 (702)
T PLN02905 248 LDIPPKLTERDFAGTPYVPVYVMLPLGVINMKCELADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKR 327 (702)
T ss_pred hhhhcccccccccCCCceeEEEEeecceecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHH
Q 010067 82 LFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIY 161 (519)
Q Consensus 82 l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y 161 (519)
||+|||++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||+|
T Consensus 328 L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y 407 (702)
T PLN02905 328 LFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVY 407 (702)
T ss_pred HHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccceEEEEeeccCCCCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhcCCCCCCC-CC
Q 010067 162 SDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWEL-PD 240 (519)
Q Consensus 162 ~dfm~sF~~~f~~~l~~~~I~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDky~~~~f~~~a~~~gn~~WG~-p~ 240 (519)
+|||+|||++|++||++|+|+||+|||||||||||||||++.||+||||||||||||||+++||++|+++||++||+ |+
T Consensus 408 ~DFM~SFr~~F~~fl~~g~I~eI~VGLGPaGELRYPSYp~s~GW~fPGiGEFQCYDKymla~Lk~aA~a~GhpeWG~gP~ 487 (702)
T PLN02905 408 FDYMRSFRVEFDEFFEDGVISMVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKSLRKAAEARGHLFWARGPD 487 (702)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeccCCCccccCCCCcCcCCCCCCCcceeeeccHHHHHHHHHHHHHhCcHhhccCCC
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred CCCCCCCCCCCCccccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecceeecccCCCchhhhh
Q 010067 241 NAGTYNDKPESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNHAAELT 320 (519)
Q Consensus 241 ~ag~yn~~P~~t~FF~~~g~~~s~YGrFFL~WYs~~L~~Hgdril~~A~~~F~g~~v~l~aKv~GIHWwy~t~SHaAElT 320 (519)
|+|+||++|++|+||+++|+|+|+||||||+|||++|++||||||++|+++|++ ++|+||||||||||+|+|||||||
T Consensus 488 dAG~YN~~P~~TgFF~~~Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~g--~~LaaKVaGIHWWY~t~SHAAELT 565 (702)
T PLN02905 488 NTGSYNSQPHETGFFCDGGDYDGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIAAKLPGVHWWYKTASHAAELT 565 (702)
T ss_pred CCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchHhhc
Confidence 999999999999999999999999999999999999999999999999999987 599999999999999999999999
Q ss_pred hcccCCCCCCChHHHHHHHhhcCcEEEEeeccccCCCCCC---cCCCChHHHHHHHHHHhhhcCCeeeeccccccCChhH
Q 010067 321 AGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDA---AAKCGPQELVQQVLSGGWRENIEVAGENALSRYDATA 397 (519)
Q Consensus 321 AGyYN~~~rdGY~~Ia~m~~rh~~~l~fTclEM~d~e~~~---~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~~~d~~~ 397 (519)
|||||+++||||+|||+|||||+|+|+||||||+|++||. +++|+||+||+||+++||++||+|+|||||+|||.++
T Consensus 566 AGYYNt~~rDGY~pIa~mfarh~~~l~FTClEM~D~eqp~~~~~a~ssPE~LV~QV~~aA~~~GV~vaGENAL~r~D~~a 645 (702)
T PLN02905 566 AGFYNPCNRDGYAAIASMLKKHGAALNFVCGEVQMLNRPDDFSEALGDPEGLAWQVLNAAWDVDTPVASENSLPCHDRVG 645 (702)
T ss_pred cccccCCCcccHHHHHHHHHHcCCeEEEEecccccCCCCCccccccCCHHHHHHHHHHHHHHhCCceeccccccccCHHH
Confidence 9999999999999999999999999999999999999986 8899999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCcceeEEecccccccCccchhHHHHHHHHhccCCCC
Q 010067 398 YNQILLNARPNGVNKEGPPKLRMYGVTYLRLSDDLLAENNFKIFKIFVKKMHADQDY 454 (519)
Q Consensus 398 ~~qi~~~~~~~g~~~~g~~~~~~~~FTylRm~~~lf~~~n~~~F~~FV~~m~~~~~~ 454 (519)
|+||++|++++ +|++..+|++||||||++.||+++||++|++|||+||++...
T Consensus 646 y~qI~~na~~~----~~~~~~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~M~~~~~~ 698 (702)
T PLN02905 646 YNKILENAKPL----NDPDGRHFSSFTYLRLSPLLMERHNFVEFERFVKRMHGEAVL 698 (702)
T ss_pred HHHHHHHhhcc----cCCccCceeeeEEecCchhhcCcchHHHHHHHHHHhcccccc
Confidence 99999999875 355566799999999999999999999999999999988553
No 5
>PLN02705 beta-amylase
Probab=100.00 E-value=8.9e-187 Score=1475.88 Aligned_cols=446 Identities=43% Similarity=0.828 Sum_probs=435.9
Q ss_pred CCCCCcccccccccCCCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHH
Q 010067 1 MQASPAALTYDEKMLPNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYR 80 (519)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~ 80 (519)
|++++++..+++....++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~ 308 (681)
T PLN02705 229 IQDVHSGEHENDFTETFYVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYR 308 (681)
T ss_pred hhccCCCCCccCcCCCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHH
Q 010067 81 SLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEI 160 (519)
Q Consensus 81 ~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~ 160 (519)
+||+|||++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||+
T Consensus 309 ~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~ 388 (681)
T PLN02705 309 ELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEV 388 (681)
T ss_pred HHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccceEEEEeeccCCCCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhcCCCCCCC-C
Q 010067 161 YSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWEL-P 239 (519)
Q Consensus 161 Y~dfm~sF~~~f~~~l~~~~I~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDky~~~~f~~~a~~~gn~~WG~-p 239 (519)
|+|||+|||++|++||++|+|+||+|||||||||||||||+..||+||||||||||||||+++||++|+++||++||+ |
T Consensus 389 Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGP~GELRYPSYp~~~gW~fPGiGEFQCYDkymla~Lk~aA~a~GhpeWG~gP 468 (681)
T PLN02705 389 YFDFMRSFRSEFDDLFVEGLITAVEIGLGASGELKYPSFPERMGWIYPGIGEFQCYDKYSQQNLRKAAKSRGHSFWARGP 468 (681)
T ss_pred HHHHHHHHHHHHHHhccCCceeEEEeccCCCccccCCCCcccCCCCCCCcceeeeccHHHHHHHHHHHHHhCcHhhccCC
Confidence 999999999999999998999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred CCCCCCCCCCCCCccccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecceeecccCCCchhhh
Q 010067 240 DNAGTYNDKPESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNHAAEL 319 (519)
Q Consensus 240 ~~ag~yn~~P~~t~FF~~~g~~~s~YGrFFL~WYs~~L~~Hgdril~~A~~~F~g~~v~l~aKv~GIHWwy~t~SHaAEl 319 (519)
+|+|.||++|++|+||+++|+|+|+||||||+|||++|++||||||++|+++|++ ++|+||||||||||+|+||||||
T Consensus 469 ~dAg~YN~~P~~tgFF~~~G~w~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~~--~~LsaKVaGIHWWY~t~SHAAEL 546 (681)
T PLN02705 469 DNAGQYNSRPHETGFFCERGDYDSYYGRFFLHWYSQLLIDHADNVLSLANLAFEE--TKIIVKIPAVYWWYKTASHAAEL 546 (681)
T ss_pred CCccccCCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchhhh
Confidence 9999999999999999988899999999999999999999999999999999986 69999999999999999999999
Q ss_pred hhcccCCCCCCChHHHHHHHhhcCcEEEEeeccccCCCC-CCcCCCChHHHHHHHHHHhhhcCCeeeeccccccCChhHH
Q 010067 320 TAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQ-DAAAKCGPQELVQQVLSGGWRENIEVAGENALSRYDATAY 398 (519)
Q Consensus 320 TAGyYN~~~rdGY~~Ia~m~~rh~~~l~fTclEM~d~e~-~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~~~d~~~~ 398 (519)
||||||+++||||+|||+|||||+|+|+|||+||+|+++ +.+++|+||+||+||+++||++||+|+|||||++||.++|
T Consensus 547 TAGYYNt~~rDGY~pIa~mfarh~~~l~FTC~eMe~~d~~~~~a~s~PE~LV~QV~~aA~~~Gv~vaGENAL~~~D~~ay 626 (681)
T PLN02705 547 TAGYYNPTNQDGYSPVFETLKKHSVTVKFVCSGLQMSPNENDEALADPEGLSWQVLNSAWDRGLTVAGENAITCYDREGC 626 (681)
T ss_pred ccccccCCCcccHHHHHHHHHHcCceEEEEeccccccCCCCCccCCCHHHHHHHHHHHHHHcCCceeecccccccCHHHH
Confidence 999999999999999999999999999999999999996 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCcceeEEecccccccCccchhHHHHHHHHhccCC
Q 010067 399 NQILLNARPNGVNKEGPPKLRMYGVTYLRLSDDLLAENNFKIFKIFVKKMHADQ 452 (519)
Q Consensus 399 ~qi~~~~~~~g~~~~g~~~~~~~~FTylRm~~~lf~~~n~~~F~~FV~~m~~~~ 452 (519)
+||++|++++ +|++..+|++||||||++.||+++||++|++|||+||++.
T Consensus 627 ~qI~~na~~~----~~~~~~~~~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~ 676 (681)
T PLN02705 627 MRLIEIAKPR----NHPDHYHFSFFVYQQPSPLVQGTTCFPELDYFIKCMHGDI 676 (681)
T ss_pred HHHHHHhccc----CCCcccceeeeEEecCchHhcCcccHHHHHHHHHHhcccc
Confidence 9999999886 4566678999999999999999999999999999999763
No 6
>PLN02161 beta-amylase
Probab=100.00 E-value=4.8e-185 Score=1445.37 Aligned_cols=435 Identities=42% Similarity=0.790 Sum_probs=421.1
Q ss_pred cccccCCCCccEEEeeccceeeCC----CcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHH
Q 010067 10 YDEKMLPNYVPIYVMLPLGVITND----NVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFEL 85 (519)
Q Consensus 10 ~~~~~~~~~vpv~VMlPLd~v~~~----~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~m 85 (519)
..+++..++||||||||||+|+.+ |+++++++|+++|++||++||||||||||||+||+++|++|||++|++||+|
T Consensus 83 ~~~~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~m 162 (531)
T PLN02161 83 VLVSSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRL 162 (531)
T ss_pred ccccccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHH
Confidence 567888999999999999999965 4899999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEEeeeccCCCCCCcccccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHH
Q 010067 86 IQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYM 165 (519)
Q Consensus 86 v~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm 165 (519)
||++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||+|+|||
T Consensus 163 vr~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm 242 (531)
T PLN02161 163 ISEAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFM 242 (531)
T ss_pred HHHcCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccceEEEEeeccCCCCCCCCCCCCCCC-CccCCCcccccccHHHHHHHHHHHHhcCCCCCCC--CCCC
Q 010067 166 KSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQG-WVFPGIGEFQCYDKYLKAEFKEAATASGHPEWEL--PDNA 242 (519)
Q Consensus 166 ~sF~~~f~~~l~~~~I~eI~VGlGP~GELRYPSyp~~~g-W~~pGiGEFQCYDky~~~~f~~~a~~~gn~~WG~--p~~a 242 (519)
+|||++|++|++ ++|+||+|||||||||||||||+.+| |+||||||||||||||+++||++|+++||++||+ |+||
T Consensus 243 ~SFr~~F~~~~~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dA 321 (531)
T PLN02161 243 LSFSTKFEPYIG-NVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNT 321 (531)
T ss_pred HHHHHHHHHHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCC
Confidence 999999999997 79999999999999999999999887 9999999999999999999999999999999996 9999
Q ss_pred CCCCCCCCCCccccC-CCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhccC------CCceEEEEecceeecccCCCc
Q 010067 243 GTYNDKPESTEFFKT-NGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLG------CKVKLAAKVSGIHWWYLADNH 315 (519)
Q Consensus 243 g~yn~~P~~t~FF~~-~g~~~s~YGrFFL~WYs~~L~~Hgdril~~A~~~F~g------~~v~l~aKv~GIHWwy~t~SH 315 (519)
|.||+.|++|+||++ +|+|+|+||||||+|||++|++||||||++|+++|++ ++|+|+||||||||||+|+||
T Consensus 322 g~Yn~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SH 401 (531)
T PLN02161 322 GCYNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSH 401 (531)
T ss_pred cccCCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCCCCCc
Confidence 999999999999996 4789999999999999999999999999999999975 789999999999999999999
Q ss_pred hhhhhhcccCCCCCCChHHHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeeeccccccCCh
Q 010067 316 AAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAGENALSRYDA 395 (519)
Q Consensus 316 aAElTAGyYN~~~rdGY~~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~~~d~ 395 (519)
||||||||||+++||||+|||+|||||+|+|+||||||+|+|||+++.|+||+||+||+++||++||+|+|||||+|||.
T Consensus 402 aAElTAGyYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~D~ 481 (531)
T PLN02161 402 PAELTAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETPEKYLCSPEGLRQQIHDVSKKWTIHVTGRNTSERFDE 481 (531)
T ss_pred hhhhccccccCCcccchHHHHHHHHHcCceEEEEeccccCCCCCccccCCHHHHHHHHHHHHHHcCCceeecccccccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCCCCCCCCCCCCcceeEEecccccccCccchhHHHHHHHHhccCC
Q 010067 396 TAYNQILLNARPNGVNKEGPPKLRMYGVTYLRLSDDLLAENNFKIFKIFVKKMHADQ 452 (519)
Q Consensus 396 ~~~~qi~~~~~~~g~~~~g~~~~~~~~FTylRm~~~lf~~~n~~~F~~FV~~m~~~~ 452 (519)
.+|+||++|++..+ ..++.+||||||++.||+++||++|++|||+||+++
T Consensus 482 ~~~~qi~~n~~~~~-------~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~~ 531 (531)
T PLN02161 482 MGLRQIRENCVQPN-------GDTLRSFTFCRMNEKIFRAENWNNFVPFIRQMSADM 531 (531)
T ss_pred hHHHHHHHHhcCCC-------CCceeeEEEEcCChhhcChhhHHHHHHHHHHhhCCC
Confidence 99999999985421 135999999999999999999999999999999874
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=9.5e-165 Score=1271.60 Aligned_cols=391 Identities=61% Similarity=1.127 Sum_probs=334.5
Q ss_pred EEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeec
Q 010067 22 YVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQ 101 (519)
Q Consensus 22 ~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHq 101 (519)
|||||||+|++++.++ +++++|++||++||||||||||||+||+++|++|||++|++|++|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999999886 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcccce
Q 010067 102 CGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVI 181 (519)
Q Consensus 102 CGGNVGD~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~~~I 181 (519)
|||||||+|+||||+||++++++| ||+||||+|+||+|||| ||++||| ||+|+|||+|||++|++|+ ++|
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~--~~I 147 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL--STI 147 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH--TGE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH--hhh
Confidence 999999999999999999999999 99999999999999999 9999999 9999999999999999999 799
Q ss_pred EEEEeeccCCCCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHH------hcCCCCCCC--CCCCCCCCCCCCCCc
Q 010067 182 IDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAAT------ASGHPEWEL--PDNAGTYNDKPESTE 253 (519)
Q Consensus 182 ~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDky~~~~f~~~a~------~~gn~~WG~--p~~ag~yn~~P~~t~ 253 (519)
+||+|||||||||||||||+.+||+||||||||||||||+++||++|+ +++|++||+ |+++ ||++|++|+
T Consensus 148 ~~I~vglGP~GELRYPSy~~~~gw~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~ 225 (402)
T PF01373_consen 148 TEIQVGLGPAGELRYPSYPESDGWRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTG 225 (402)
T ss_dssp EEEEE--SGGGBSS-S-S-GGGTB-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGST
T ss_pred eEEEeccCCcceeccCCCCCCCCCcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999 578999998 6666 999999999
Q ss_pred cccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCC-CceEEEEecceeeccc--CCCchhhhhhcccCCCCCC
Q 010067 254 FFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGC-KVKLAAKVSGIHWWYL--ADNHAAELTAGYYNLNDRD 330 (519)
Q Consensus 254 FF~~~g~~~s~YGrFFL~WYs~~L~~Hgdril~~A~~~F~g~-~v~l~aKv~GIHWwy~--t~SHaAElTAGyYN~~~rd 330 (519)
||+++|+|+|+||||||+|||++|++||||||++|+++|+++ +|+|++|||||||||+ |+||||||||||||
T Consensus 226 fF~~~G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN----- 300 (402)
T PF01373_consen 226 FFRDNGSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYNSPTRSHAAELTAGYYN----- 300 (402)
T ss_dssp TTSTTCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTTSTSTTTHHHHHHT-S------
T ss_pred CcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccCCCCCCChHHHhccccC-----
Confidence 999999999999999999999999999999999999999998 9999999999999999 88999999999999
Q ss_pred ChHHHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeeeccccccCChhHHHHHHHHhCCCCC
Q 010067 331 GYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGV 410 (519)
Q Consensus 331 GY~~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~g~ 410 (519)
|+|||+|||||+|+|+||||||+|+++. +.+|+||+||+||+++|+++||+|+|||||+|||+++|+||+++++..
T Consensus 301 -Y~~Ia~mf~kh~~~l~fTClEM~d~~~~-p~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~-- 376 (402)
T PF01373_consen 301 -YSPIARMFKKHGVTLNFTCLEMRDSEEQ-PEYSSPEGLVRQVLNAAWRHGVPVAGENALPRYDNGAYNQILENAKGY-- 376 (402)
T ss_dssp -SHHHHHHHHTTT-EEEES-TT--GGSGS-CGGG-HHHHHHHHHHHHHHTT-EEEEE-SS---SHHHHHHHHHHHTHT--
T ss_pred -HHHHHHHHHHcCcEEEEEeccccCCCCC-CCCCCHHHHHHHHHHHHHHcCCCEeeeeCccccCHHHHHHHHHHhhcc--
Confidence 9999999999999999999999999432 236799999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCcceeEEecccccccCccchhHHHHH
Q 010067 411 NKEGPPKLRMYGVTYLRLSDDLLAENNFKIFKIF 444 (519)
Q Consensus 411 ~~~g~~~~~~~~FTylRm~~~lf~~~n~~~F~~F 444 (519)
.+.+||||||++.||+++||++|++|
T Consensus 377 --------~~~gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 377 --------NYSGFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp --------TTTSEEES-HCHHHHSHHHHHHHHHH
T ss_pred --------CCCCeEEEccChHhcCcccHHhccCC
Confidence 25679999999999999999999998
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.85 E-value=4.2e-22 Score=204.79 Aligned_cols=210 Identities=20% Similarity=0.337 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEee-eeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCCh
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDV-WWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPK 116 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdV-WWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~ 116 (519)
+++.|+++|+.||++|++.|++.+ -|..+|| .||+|||+.+++++++++++|||| ||++ .+...|.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP-~eG~ydF~~lD~~l~~a~~~Gi~v--iL~~----------~~~~~P~ 74 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP-EEGQYDFSWLDRVLDLAAKHGIKV--ILGT----------PTAAPPA 74 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S-BTTB---HHHHHHHHHHHCTT-EE--EEEE----------CTTTS-H
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccC-CCCeeecHHHHHHHHHHHhccCeE--EEEe----------ccccccc
Confidence 457899999999999999999865 5999998 899999999999999999999998 8888 6778999
Q ss_pred hhhhhhccCCCeeeecCCCCccc------cccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcccceEEEEeeccC
Q 010067 117 WVLEIGETNPDIFYTNRSGNRNK------EYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGP 190 (519)
Q Consensus 117 WV~~~g~~~PDi~ytD~~G~rn~------E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~~~I~eI~VGlGP 190 (519)
|+. +++||++.+|++|++.. -|++ + +.|+++++.|.++++.
T Consensus 75 Wl~---~~~Pe~~~~~~~g~~~~~g~~~~~~~~------------~--p~yr~~~~~~~~~l~~---------------- 121 (374)
T PF02449_consen 75 WLY---DKYPEILPVDADGRRRGFGSRQHYCPN------------S--PAYREYARRFIRALAE---------------- 121 (374)
T ss_dssp HHH---CCSGCCC-B-TTTSBEECCCSTT-HCC------------H--HHHHHHHHHHHHHHHH----------------
T ss_pred chh---hhcccccccCCCCCcCccCCccccchh------------H--HHHHHHHHHHHHHHHh----------------
Confidence 998 78999999999987642 2222 3 8899999999999988
Q ss_pred CCCCCCCCCCCCCCCcc---CCCcccccccHHHHHHHHHHHHh------cCCCCCCCCC-----CCCCCCCCCCCCcccc
Q 010067 191 AGELRYPSYPESQGWVF---PGIGEFQCYDKYLKAEFKEAATA------SGHPEWELPD-----NAGTYNDKPESTEFFK 256 (519)
Q Consensus 191 ~GELRYPSyp~~~gW~~---pGiGEFQCYDky~~~~f~~~a~~------~gn~~WG~p~-----~ag~yn~~P~~t~FF~ 256 (519)
||..+|...||+. ||.+ .||++.+++.|++|+++ ++|.+||+.+ .+++.+.+|..+....
T Consensus 122 ----~y~~~p~vi~~~i~NE~~~~--~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~ 195 (374)
T PF02449_consen 122 ----RYGDHPAVIGWQIDNEPGYH--RCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPE 195 (374)
T ss_dssp ----HHTTTTTEEEEEECCSTTCT--S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS--
T ss_pred ----hccccceEEEEEeccccCcC--cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCC
Confidence 7778887777776 5554 89999999999999986 7899999987 9999999998877444
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecce
Q 010067 257 TNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGI 306 (519)
Q Consensus 257 ~~g~~~s~YGrFFL~WYs~~L~~Hgdril~~A~~~F~g~~v~l~aKv~GI 306 (519)
+++ ...+|-||..+ .+.+....+.+..+++-. +..|..+.-+.
T Consensus 196 ~~~-~~~D~~rF~~~----~~~~~~~~~~~~ir~~~p--~~~vt~n~~~~ 238 (374)
T PF02449_consen 196 NPA-QWLDWYRFQSD----RVAEFFRWQADIIREYDP--DHPVTTNFMGS 238 (374)
T ss_dssp -HH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHST--T-EEE-EE-TT
T ss_pred ChH-HHHHHHHHHHH----HHHHHHHHHHHHHHHhCC--CceEEeCcccc
Confidence 433 55566666554 444444444444444433 35777777765
No 9
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=2.4e-13 Score=150.90 Aligned_cols=198 Identities=18% Similarity=0.320 Sum_probs=155.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEE-eeeeeeeccCCCccccchhHHHH-HHHHHHcCCcEEEEEeeeccCCCCCCcccccCC
Q 010067 38 DKDKLESQLKELKAAGVDGIMV-DVWWGIIESKGPRQYDWSAYRSL-FELIQQYELKLQAIMSFHQCGGNVGDVVTIPIP 115 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~v-dVWWGiVE~~~p~~YdWs~Y~~l-~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP 115 (519)
+++.|+.+|++||++|++.|++ .+-|+.+|+ ..|+|||++.+.. ++++++.||++ ||++ | ++-..|
T Consensus 28 p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP-~eG~fdf~~~D~~~l~~a~~~Gl~v--il~t----~-----P~g~~P 95 (673)
T COG1874 28 PRETWMDDLRKMKALGLNTVRIGYFAWNLHEP-EEGKFDFTWLDEIFLERAYKAGLYV--ILRT----G-----PTGAPP 95 (673)
T ss_pred CHHHHHHHHHHHHHhCCCeeEeeeEEeeccCc-cccccCcccchHHHHHHHHhcCceE--EEec----C-----CCCCCc
Confidence 5589999999999999999999 555999998 7999999999999 99999999999 9998 2 456699
Q ss_pred hhhhhhhccCCCeeeecCCCCcc------ccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcccceEEEEeecc
Q 010067 116 KWVLEIGETNPDIFYTNRSGNRN------KEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLG 189 (519)
Q Consensus 116 ~WV~~~g~~~PDi~ytD~~G~rn------~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~~~I~eI~VGlG 189 (519)
.|+. +++|+|+.+|+.|.+. +-|.+ + ..|+++.+...+..++
T Consensus 96 ~Wl~---~~~PeiL~~~~~~~~~~~g~r~~~~~~------------~--~~Yr~~~~~i~~~ire--------------- 143 (673)
T COG1874 96 AWLA---KKYPEILAVDENGRVRSDGARENICPV------------S--PVYREYLDRILQQIRE--------------- 143 (673)
T ss_pred hHHh---cCChhheEecCCCcccCCCcccccccc------------c--HHHHHHHHHHHHHHHH---------------
Confidence 9999 8899999999986543 45555 5 4899999888888887
Q ss_pred CCCCCC-CCCCCCCCCCcc----CCCcccccccHHHHHHHHHHHHh------cCCCCCCCCC-----CCCCCCCCCC-CC
Q 010067 190 PAGELR-YPSYPESQGWVF----PGIGEFQCYDKYLKAEFKEAATA------SGHPEWELPD-----NAGTYNDKPE-ST 252 (519)
Q Consensus 190 P~GELR-YPSyp~~~gW~~----pGiGEFQCYDky~~~~f~~~a~~------~gn~~WG~p~-----~ag~yn~~P~-~t 252 (519)
| |...|...+|+. .|. -||++++++.|+.|+++ ..|.+|++.+ .+++.+.+|. ..
T Consensus 144 -----r~~~~~~~v~~w~~dneY~~~---~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~ 215 (673)
T COG1874 144 -----RLYGNGPAVITWQNDNEYGGH---PCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFG 215 (673)
T ss_pred -----HHhccCCceeEEEccCccCCc---cccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCcc
Confidence 5 666666555653 554 59999999999999986 6699999844 4788887776 23
Q ss_pred ccccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010067 253 EFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFL 293 (519)
Q Consensus 253 ~FF~~~g~~~s~YGrFFL~WYs~~L~~Hgdril~~A~~~F~ 293 (519)
+ -...+ -.++|-+|..+= .++-.++....++..|.
T Consensus 216 e-~~~~~-~~ld~~~f~~e~----~~~~~~~~~~~~~~~~P 250 (673)
T COG1874 216 E-LPLPG-LYLDYRRFESEQ----ILEFVREEGEAIKAYFP 250 (673)
T ss_pred c-cCCcc-chhhHhhhhhhh----hHHHHHHHHHHHHHhCC
Confidence 3 11123 337888887664 55566666677777773
No 10
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.73 E-value=5.2e-08 Score=100.19 Aligned_cols=118 Identities=24% Similarity=0.440 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchh---HHHHHHHHHHcCCcEEEEEee--eccCCCCCCcccc
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSA---YRSLFELIQQYELKLQAIMSF--HQCGGNVGDVVTI 112 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~---Y~~l~~mv~~~GLKv~~imsf--HqCGGNVGD~~~I 112 (519)
+++.|+..|++||++|++.|.+.|.|...|+ .||+|||++ .++++++|+++||+| |+.+ =.|+- ..+=
T Consensus 22 p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~-~~g~~df~g~~dl~~f~~~a~~~gl~v--ilrpGpyi~aE----~~~g 94 (319)
T PF01301_consen 22 PPEYWRDRLQKMKAAGLNTVSTYVPWNLHEP-EEGQFDFTGNRDLDRFLDLAQENGLYV--ILRPGPYICAE----WDNG 94 (319)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEE--HHHHSS-BTTB---SGGG-HHHHHHHHHHTT-EE--EEEEES---TT----BGGG
T ss_pred ChhHHHHHHHHHHhCCcceEEEeccccccCC-CCCcccccchhhHHHHHHHHHHcCcEE--Eecccceeccc----ccch
Confidence 5889999999999999999999999999998 799999997 679999999999997 6665 22321 1111
Q ss_pred cCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhc--ccceEEEEe
Q 010067 113 PIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLE--AGVIIDIEV 186 (519)
Q Consensus 113 pLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~--~~~I~eI~V 186 (519)
-||.||.+ +|++.+.+. +..++ +.-+.|++.+...++.++- .|.|.-|||
T Consensus 95 G~P~Wl~~----~~~~~~R~~----~~~~~----------------~~~~~~~~~~~~~~~~~~~~~GGpII~vQv 146 (319)
T PF01301_consen 95 GLPAWLLR----KPDIRLRTN----DPPFL----------------EAVERWYRALAKIIKPLQYTNGGPIIMVQV 146 (319)
T ss_dssp G--GGGGG----STTS-SSSS-----HHHH----------------HHHHHHHHHHHHHHGGGBGGGTSSEEEEEE
T ss_pred hhhhhhhc----ccccccccc----chhHH----------------HHHHHHHHHHHHHHHhhhhcCCCceehhhh
Confidence 29999973 334433211 12222 4445666666777776552 368999998
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=98.37 E-value=2.1e-06 Score=98.09 Aligned_cols=141 Identities=21% Similarity=0.371 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHH---HHHHHHHHcCCcEEEEEeeecc-----CCCCCCc
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYR---SLFELIQQYELKLQAIMSFHQC-----GGNVGDV 109 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~---~l~~mv~~~GLKv~~imsfHqC-----GGNVGD~ 109 (519)
+++.|+.-|++||++|++.|.+-|.|..-|+ .||+|||++-+ +.+++|++.||.|++=..=.-| ||
T Consensus 57 ~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp-~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GG----- 130 (840)
T PLN03059 57 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGG----- 130 (840)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecccccCC-CCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCC-----
Confidence 6889999999999999999999999999998 79999999855 5578999999999443333333 34
Q ss_pred ccccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhc--------ccce
Q 010067 110 VTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLE--------AGVI 181 (519)
Q Consensus 110 ~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~--------~~~I 181 (519)
||.|+. ++|+|.+.+.+ +.|.+.|+.|-+++.+.+. .|-|
T Consensus 131 ----lP~WL~----~~~~i~~Rs~d------------------------~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPI 178 (840)
T PLN03059 131 ----FPVWLK----YVPGIEFRTDN------------------------GPFKAAMQKFTEKIVDMMKSEKLFEPQGGPI 178 (840)
T ss_pred ----Cchhhh----cCCCcccccCC------------------------HHHHHHHHHHHHHHHHHHhhcceeecCCCcE
Confidence 999997 35666554222 6677777777777666552 4568
Q ss_pred EEEEeeccCCCCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhcC
Q 010067 182 IDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASG 232 (519)
Q Consensus 182 ~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDky~~~~f~~~a~~~g 232 (519)
.-+|| |=-|.||... | | --|+.-++.+++.|++.|
T Consensus 179 ImvQI------ENEYGs~~~~----~-~-----~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 179 ILSQI------ENEYGPVEWE----I-G-----APGKAYTKWAADMAVKLG 213 (840)
T ss_pred EEEEe------cccccceecc----c-C-----cchHHHHHHHHHHHHHcC
Confidence 88888 5568777422 1 1 124444566777777644
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=97.59 E-value=0.00017 Score=77.14 Aligned_cols=112 Identities=17% Similarity=0.264 Sum_probs=87.0
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc
Q 010067 35 VLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYD---WSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVT 111 (519)
Q Consensus 35 ~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~ 111 (519)
....-..++.+++.||++|++.+++.+=|..+|+.+++++| +..|+++++.++++||+..|.|. |
T Consensus 49 a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H----------- 116 (427)
T TIGR03356 49 ACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H----------- 116 (427)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------
Confidence 33455788999999999999999999999999998788888 79999999999999999966664 3
Q ss_pred ccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc-cceEEEEe
Q 010067 112 IPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA-GVIIDIEV 186 (519)
Q Consensus 112 IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~-~~I~eI~V 186 (519)
..+|.|+.+ +.|-.+ +.-++.|.+|.+...++|.+..+- -||.|..+
T Consensus 117 fd~P~~l~~------------~gGw~~----------------~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 117 WDLPQALED------------RGGWLN----------------RDTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred CCccHHHHh------------cCCCCC----------------hHHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 358999862 333322 233588999999999999873220 25667654
No 13
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.41 E-value=0.00063 Score=65.73 Aligned_cols=59 Identities=19% Similarity=0.360 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeec-cCCCc---cccchhHHHHHHHHHHcCCcEEEEEeeec
Q 010067 41 KLESQLKELKAAGVDGIMVDVWWGIIE-SKGPR---QYDWSAYRSLFELIQQYELKLQAIMSFHQ 101 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdVWWGiVE-~~~p~---~YdWs~Y~~l~~mv~~~GLKv~~imsfHq 101 (519)
..+++++.||++|++-|++.+.|...+ +..+. .--|..++++++.|+++||+| |+.+|.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~ 84 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHN 84 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEecc
Confidence 679999999999999999999995444 43333 345788999999999999999 899995
No 14
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.0024 Score=71.58 Aligned_cols=84 Identities=29% Similarity=0.576 Sum_probs=63.3
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHH---HHHHHcCCcEEEEEee--ecc-CCCCCCcc
Q 010067 37 EDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLF---ELIQQYELKLQAIMSF--HQC-GGNVGDVV 110 (519)
Q Consensus 37 ~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~---~mv~~~GLKv~~imsf--HqC-GGNVGD~~ 110 (519)
..++.|+.-|+++|++|.++|.+-|+|..-|+ .||+||||+=..|+ ++|++.||=| +|-- =-| -.|-|.
T Consensus 46 ~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep-~~g~y~FsG~~DlvkFikl~~~~GLyv--~LRiGPyIcaEw~~GG-- 120 (649)
T KOG0496|consen 46 STPEMWPDLIKKAKAGGLNVIQTYVFWNLHEP-SPGKYDFSGRYDLVKFIKLIHKAGLYV--ILRIGPYICAEWNFGG-- 120 (649)
T ss_pred CChhhhHHHHHHHHhcCCceeeeeeecccccC-CCCcccccchhHHHHHHHHHHHCCeEE--EecCCCeEEecccCCC--
Confidence 36789999999999999999999999999998 89999999976665 5778888877 4432 011 112221
Q ss_pred cccCChhhhhhhccCCCeeeec
Q 010067 111 TIPIPKWVLEIGETNPDIFYTN 132 (519)
Q Consensus 111 ~IpLP~WV~~~g~~~PDi~ytD 132 (519)
+|.|+ +.-|.|.|..
T Consensus 121 ---~P~wL----~~~pg~~~Rt 135 (649)
T KOG0496|consen 121 ---LPWWL----RNVPGIVFRT 135 (649)
T ss_pred ---cchhh----hhCCceEEec
Confidence 88666 4667777764
No 15
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.08 E-value=0.0017 Score=69.87 Aligned_cols=101 Identities=17% Similarity=0.367 Sum_probs=76.0
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC-Ccccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc
Q 010067 36 LEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKG-PRQYD---WSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVT 111 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~-p~~Yd---Ws~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~ 111 (519)
-..-..++.|++.||++|++..++.+=|..|+|.+ .+++| +..|+++++.++++|++..|.|.-
T Consensus 54 ~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H------------ 121 (455)
T PF00232_consen 54 CDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYH------------ 121 (455)
T ss_dssp TGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEES------------
T ss_pred ccchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeee------------
Confidence 34457899999999999999999999999999987 78888 999999999999999999666542
Q ss_pred ccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhh
Q 010067 112 IPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFL 176 (519)
Q Consensus 112 IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l 176 (519)
..+|.|+.+.| |-.| |.-++.|.+|.+-..++|.+..
T Consensus 122 ~~~P~~l~~~g------------gw~~----------------~~~~~~F~~Ya~~~~~~~gd~V 158 (455)
T PF00232_consen 122 FDLPLWLEDYG------------GWLN----------------RETVDWFARYAEFVFERFGDRV 158 (455)
T ss_dssp S--BHHHHHHT------------GGGS----------------THHHHHHHHHHHHHHHHHTTTB
T ss_pred cccccceeecc------------cccC----------------HHHHHHHHHHHHHHHHHhCCCc
Confidence 45999998432 2222 3445889999999999998844
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=96.94 E-value=0.035 Score=55.17 Aligned_cols=193 Identities=17% Similarity=0.277 Sum_probs=107.7
Q ss_pred eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhhhhccCCCeeeecCCCCcccccc
Q 010067 63 WGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYL 142 (519)
Q Consensus 63 WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~l 142 (519)
|+.+|+ .+|+|||+..+++++.|+++|++++.-..+..+ ..|.|+.+.. .+
T Consensus 3 W~~~ep-~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~----------~~P~W~~~~~----------------~~-- 53 (254)
T smart00633 3 WDSTEP-SRGQFNFSGADAIVNFAKENGIKVRGHTLVWHS----------QTPDWVFNLS----------------KE-- 53 (254)
T ss_pred cccccC-CCCccChHHHHHHHHHHHHCCCEEEEEEEeecc----------cCCHhhhcCC----------------HH--
Confidence 899998 899999999999999999999999643333211 3789986211 11
Q ss_pred ccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcccceEEEEeeccCCCCCCCCCCCCCCCCccCCCcccccccHHHHH
Q 010067 143 TIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKA 222 (519)
Q Consensus 143 Slg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~~~I~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDky~~~ 222 (519)
.-.+...+|++....++++ .|..++|.=-|-..= -+.+.. .-| ++..| .+|+..
T Consensus 54 -------------~~~~~~~~~i~~v~~ry~g-----~i~~wdV~NE~~~~~-~~~~~~-~~w-~~~~G-----~~~i~~ 107 (254)
T smart00633 54 -------------TLLARLENHIKTVVGRYKG-----KIYAWDVVNEALHDN-GSGLRR-SVW-YQILG-----EDYIEK 107 (254)
T ss_pred -------------HHHHHHHHHHHHHHHHhCC-----cceEEEEeeecccCC-Cccccc-chH-HHhcC-----hHHHHH
Confidence 1235667777777777654 566677665554320 000111 012 12233 468888
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEE
Q 010067 223 EFKEAATASGHPEWELPDNAGTYNDKPESTEFFKTNGTYLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAK 302 (519)
Q Consensus 223 ~f~~~a~~~gn~~WG~p~~ag~yn~~P~~t~FF~~~g~~~s~YGrFFL~WYs~~L~~Hgdril~~A~~~F~g~~v~l~aK 302 (519)
.|+.+.+.. |+ +..|-| + |+..-+. .+.++++...+.+... +++|-+
T Consensus 108 af~~ar~~~-----------------P~-a~l~~N-d-y~~~~~~-----------~k~~~~~~~v~~l~~~-g~~iDg- 154 (254)
T smart00633 108 AFRYAREAD-----------------PD-AKLFYN-D-YNTEEPN-----------AKRQAIYELVKKLKAK-GVPIDG- 154 (254)
T ss_pred HHHHHHHhC-----------------CC-CEEEEe-c-cCCcCcc-----------HHHHHHHHHHHHHHHC-CCccce-
Confidence 888655431 21 222222 1 2221110 2234555555554432 333211
Q ss_pred ecceeecccCCCchhhhhhcccCCCCCCChHHHHHHHhhcCcEEEEeeccccCC
Q 010067 303 VSGIHWWYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNS 356 (519)
Q Consensus 303 v~GIHWwy~t~SHaAElTAGyYN~~~rdGY~~Ia~m~~rh~~~l~fTclEM~d~ 356 (519)
=|++++..... .+.+.....++.|++.|..+.+|=++++..
T Consensus 155 -iGlQ~H~~~~~------------~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~ 195 (254)
T smart00633 155 -IGLQSHLSLGS------------PNIAEIRAALDRFASLGLEIQITELDISGY 195 (254)
T ss_pred -eeeeeeecCCC------------CCHHHHHHHHHHHHHcCCceEEEEeecCCC
Confidence 13444332211 112346778888899999999998888764
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.75 E-value=0.0054 Score=66.94 Aligned_cols=112 Identities=16% Similarity=0.369 Sum_probs=86.4
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC----CccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc
Q 010067 36 LEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKG----PRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVT 111 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~----p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~ 111 (519)
...-..++.+++.||++|++..++.+=|..++|.+ +++-.++.|+++++.++++|++..|.|.-
T Consensus 67 ~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H------------ 134 (474)
T PRK09852 67 IDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCH------------ 134 (474)
T ss_pred CchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC------------
Confidence 34456789999999999999999999999999865 47888999999999999999999777765
Q ss_pred ccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc-cceEEEEe
Q 010067 112 IPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA-GVIIDIEV 186 (519)
Q Consensus 112 IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~-~~I~eI~V 186 (519)
-.||.|+.+ +.|- |..|.-++.|.+|.+-..++|.+..+- =||.|..|
T Consensus 135 ~~~P~~l~~------------~~GG---------------W~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 135 FDVPMHLVT------------EYGS---------------WRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred CCCCHHHHH------------hcCC---------------CCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 469999852 2121 112345688999999999999884321 15667653
No 18
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=96.65 E-value=0.026 Score=51.92 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=72.5
Q ss_pred HHHHHHHHHcCcceEEEeee--eee------eccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccC
Q 010067 43 ESQLKELKAAGVDGIMVDVW--WGI------IESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPI 114 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVW--WGi------VE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpL 114 (519)
++-++.||++||+.|++..= +|. +-...|+- .-.-+.++++.|++.|++|.+-++|+ .
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~-------------~ 68 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS-------------W 68 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee-------------c
Confidence 34567899999999999442 321 22222332 36788999999999999999999993 3
Q ss_pred ChhhhhhhccCCCeeeecCCCCc--cccccccccCCccCCCCCChHHHHHHHHHHHHHHHHh
Q 010067 115 PKWVLEIGETNPDIFYTNRSGNR--NKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFD 174 (519)
Q Consensus 115 P~WV~~~g~~~PDi~ytD~~G~r--n~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~ 174 (519)
-.++. +++||=+..|++|+. ..+....+.-.+++- + -|+||+..-.+++-+
T Consensus 69 d~~~~---~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n---s---~Y~e~~~~~i~Ei~~ 121 (132)
T PF14871_consen 69 DEDAA---ERHPEWFVRDADGRPMRGERFGYPGWYTCCLN---S---PYREFLLEQIREILD 121 (132)
T ss_pred ChHHH---HhCCceeeECCCCCCcCCCCcCCCCceecCCC---c---cHHHHHHHHHHHHHH
Confidence 34444 889999999999982 222222111112221 3 488888877777655
No 19
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.37 E-value=0.01 Score=64.81 Aligned_cols=110 Identities=14% Similarity=0.274 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC----CccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccccc
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKG----PRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIP 113 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~----p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~Ip 113 (519)
.-..++.|++.||++|++..++.+=|..++|.+ +++-.+..|+++++.++++|++..|-|. .-.
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~------------H~d 134 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS------------HFE 134 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee------------CCC
Confidence 345679999999999999999999999999965 4677899999999999999999855553 256
Q ss_pred CChhhhhhhccCCCeeeecC-CCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc-cceEEEEee
Q 010067 114 IPKWVLEIGETNPDIFYTNR-SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA-GVIIDIEVG 187 (519)
Q Consensus 114 LP~WV~~~g~~~PDi~ytD~-~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~-~~I~eI~VG 187 (519)
||.|+.+ + .|-.| |.-++.|.+|.+-..++|.+-.+- =||.|+.+-
T Consensus 135 lP~~L~~------------~yGGW~n----------------~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~ 182 (477)
T PRK15014 135 MPLHLVQ------------QYGSWTN----------------RKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQ 182 (477)
T ss_pred CCHHHHH------------hcCCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccc
Confidence 9999962 2 22222 234588999998888888873320 167787653
No 20
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.20 E-value=0.48 Score=49.17 Aligned_cols=231 Identities=20% Similarity=0.273 Sum_probs=136.2
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeee-ee------eccCC------Ccc-ccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 35 VLEDKDKLESQLKELKAAGVDGIMVDVWW-GI------IESKG------PRQ-YDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 35 ~~~~~~~~~~~L~~LK~~GVdgV~vdVWW-Gi------VE~~~------p~~-YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
.+..++++++-|+.|+++|++.|-+.||+ |. +|+.+ +++ -.|.-+..+++.+++.||+|++=|-+-
T Consensus 14 ~~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~ 93 (311)
T PF02638_consen 14 DWPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVG 93 (311)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEee
Confidence 34478899999999999999999999995 33 33321 111 137789999999999999999988442
Q ss_pred ccCCCCCCcccccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcccc
Q 010067 101 QCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGV 180 (519)
Q Consensus 101 qCGGNVGD~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~~~ 180 (519)
.-..+++... -.-|.|+. .++|+...+...+.-+.-+|. | ..+.=++|+.+...++..-. .
T Consensus 94 ~~~~~~~~~~-~~~p~~~~---~~~~~~~~~~~~~~~~~~~ln------P------~~PeVr~~i~~~v~Eiv~~Y---d 154 (311)
T PF02638_consen 94 FNAPDVSHIL-KKHPEWFA---VNHPGWVRTYEDANGGYYWLN------P------GHPEVRDYIIDIVKEIVKNY---D 154 (311)
T ss_pred cCCCchhhhh-hcCchhhe---ecCCCceeecccCCCCceEEC------C------CCHHHHHHHHHHHHHHHhcC---C
Confidence 2111222211 12577765 456676666555554555666 2 23677999999988887622 2
Q ss_pred eEEEEeeccCCCCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccccCCCc
Q 010067 181 IIDIEVGLGPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDKPESTEFFKTNGT 260 (519)
Q Consensus 181 I~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDky~~~~f~~~a~~~gn~~WG~p~~ag~yn~~P~~t~FF~~~g~ 260 (519)
|..|++= --|||.. . + -||.+..+.|++.-... |. ..|.+ .
T Consensus 155 vDGIhlD-----dy~yp~~--~--~---------g~~~~~~~~y~~~~g~~-------~~------~~~~d-------~- 195 (311)
T PF02638_consen 155 VDGIHLD-----DYFYPPP--S--F---------GYDFPDVAAYEKYTGKD-------PF------SSPED-------D- 195 (311)
T ss_pred CCeEEec-----ccccccc--c--C---------CCCCccHHHHHHhcCcC-------CC------CCccc-------h-
Confidence 4444332 1233311 1 1 24555566776531100 10 00111 0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEecceeecccCCCchhhhhhcccCCCCCCChHHHHHHHh
Q 010067 261 YLSEQGNFFLTWYSNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNHAAELTAGYYNLNDRDGYRPIARILS 340 (519)
Q Consensus 261 ~~s~YGrFFL~WYs~~L~~Hgdril~~A~~~F~g~~v~l~aKv~GIHWwy~t~SHaAElTAGyYN~~~rdGY~~Ia~m~~ 340 (519)
.+.+|=.+.+.+-..+|-+..+++= ..|.+++=+.|+ ||.+-.+=|.....-++
T Consensus 196 -------~W~~WRr~~I~~~V~~i~~~ik~~k--P~v~~sisp~g~-----------------~~~~y~~~~qD~~~W~~ 249 (311)
T PF02638_consen 196 -------AWTQWRRDNINNFVKRIYDAIKAIK--PWVKFSISPFGI-----------------WNSAYDDYYQDWRNWLK 249 (311)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEeecc-----------------hhhhhhheeccHHHHHh
Confidence 1777877777777777777766543 356777755553 22333345666777776
Q ss_pred hcCcEEEEe
Q 010067 341 RHYGILNFT 349 (519)
Q Consensus 341 rh~~~l~fT 349 (519)
+--++..++
T Consensus 250 ~G~iD~i~P 258 (311)
T PF02638_consen 250 EGYIDYIVP 258 (311)
T ss_pred cCCccEEEe
Confidence 544666555
No 21
>PLN02814 beta-glucosidase
Probab=96.00 E-value=0.024 Score=62.45 Aligned_cols=111 Identities=12% Similarity=0.234 Sum_probs=85.3
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccc---hhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccc
Q 010067 36 LEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDW---SAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTI 112 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdW---s~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~I 112 (519)
...-...+.|++.||++|++.-+..+=|..|+|.++++.|- ..|++|++.++++|++-.|-|. .-
T Consensus 73 ~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~------------H~ 140 (504)
T PLN02814 73 SDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY------------HY 140 (504)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec------------CC
Confidence 34556789999999999999999999999999988777765 6799999999999999855553 35
Q ss_pred cCChhhhhhhccCCCeeeecC-CCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc-cceEEEEe
Q 010067 113 PIPKWVLEIGETNPDIFYTNR-SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA-GVIIDIEV 186 (519)
Q Consensus 113 pLP~WV~~~g~~~PDi~ytD~-~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~-~~I~eI~V 186 (519)
.||.|+.+ + .|-. .|.-++.|.+|.+--.++|.+..+- =||.|..+
T Consensus 141 dlP~~L~~------------~yGGW~----------------n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 141 DLPQSLED------------EYGGWI----------------NRKIIEDFTAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred CCCHHHHH------------hcCCcC----------------ChhHHHHHHHHHHHHHHHhCCcCCEEEeccccch
Confidence 69999963 2 2322 2344688999999999999884421 14557653
No 22
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.92 E-value=0.022 Score=61.96 Aligned_cols=111 Identities=15% Similarity=0.212 Sum_probs=84.8
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCc---cccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc
Q 010067 35 VLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPR---QYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVT 111 (519)
Q Consensus 35 ~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~---~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~ 111 (519)
....-...+.|++.||++|++.-+..+=|..|+|.+++ +=-+..|++|++.++++|++-.|.|- .
T Consensus 49 a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~------------H 116 (469)
T PRK13511 49 ASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH------------H 116 (469)
T ss_pred ccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec------------C
Confidence 34455678999999999999999999999999998765 44578899999999999999855553 3
Q ss_pred ccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc-cceEEEEe
Q 010067 112 IPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA-GVIIDIEV 186 (519)
Q Consensus 112 IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~-~~I~eI~V 186 (519)
..||.|+.+ +.|-.|. .-++.|.+|.+-..++|.+ .+- =||.|..+
T Consensus 117 ~dlP~~L~~------------~GGW~n~----------------~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~ 163 (469)
T PRK13511 117 FDTPEALHS------------NGDWLNR----------------ENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGP 163 (469)
T ss_pred CCCcHHHHH------------cCCCCCH----------------HHHHHHHHHHHHHHHHhCC-CCEEEEccchhh
Confidence 579999962 3343333 3458889998888888888 641 14666543
No 23
>PLN02998 beta-glucosidase
Probab=95.71 E-value=0.035 Score=61.16 Aligned_cols=111 Identities=13% Similarity=0.270 Sum_probs=85.0
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccc
Q 010067 36 LEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYD---WSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTI 112 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~I 112 (519)
...-..++.|++.||++|++.-+..+=|..|+|.+++.+| ...|+++++-++++|++-.|-|. ..
T Consensus 78 ~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~------------H~ 145 (497)
T PLN02998 78 CDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH------------HF 145 (497)
T ss_pred ccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec------------CC
Confidence 3455678999999999999999999999999998777664 67899999999999999855553 35
Q ss_pred cCChhhhhhhccCCCeeeecC-CCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc-cceEEEEe
Q 010067 113 PIPKWVLEIGETNPDIFYTNR-SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA-GVIIDIEV 186 (519)
Q Consensus 113 pLP~WV~~~g~~~PDi~ytD~-~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~-~~I~eI~V 186 (519)
.||.|+.+ + .|-. .|.-++.|.+|.+--.++|.+-.+- =||.|..+
T Consensus 146 dlP~~L~~------------~yGGW~----------------n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 146 DLPQALED------------EYGGWL----------------SQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CCCHHHHH------------hhCCcC----------------CchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 69999963 2 2322 2344689999999989999883320 15667654
No 24
>PLN02849 beta-glucosidase
Probab=95.61 E-value=0.042 Score=60.56 Aligned_cols=112 Identities=13% Similarity=0.297 Sum_probs=85.5
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc
Q 010067 35 VLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYD---WSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVT 111 (519)
Q Consensus 35 ~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~ 111 (519)
....-...+.|++.||++|++.-+..+=|..|+|.+.++.| ...|+++++-++++|++-.|-|. |
T Consensus 74 a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H----------- 141 (503)
T PLN02849 74 ACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-H----------- 141 (503)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-C-----------
Confidence 33455788999999999999999999999999998766555 66899999999999999855553 3
Q ss_pred ccCChhhhhhhccCCCeeeecC-CCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc-cceEEEEe
Q 010067 112 IPIPKWVLEIGETNPDIFYTNR-SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA-GVIIDIEV 186 (519)
Q Consensus 112 IpLP~WV~~~g~~~PDi~ytD~-~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~-~~I~eI~V 186 (519)
-.||.|+.+ + .|-.| |.-++.|.+|.+--.++|.+..+- =||.|..+
T Consensus 142 ~dlP~~L~~------------~yGGW~n----------------r~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 142 YDHPQYLED------------DYGGWIN----------------RRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred CCCcHHHHH------------hcCCcCC----------------chHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 569999963 2 23322 344689999999989999884321 15667654
No 25
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.58 E-value=0.024 Score=61.75 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=84.3
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc---cchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc
Q 010067 35 VLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY---DWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVT 111 (519)
Q Consensus 35 ~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y---dWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~ 111 (519)
....-...+.+++.||++|++.-+..+=|..++|.+++++ -...|+++++-++++|++-.|-|. .
T Consensus 48 a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~------------H 115 (467)
T TIGR01233 48 ASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH------------H 115 (467)
T ss_pred cCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc------------C
Confidence 4445577899999999999999999999999999887766 377899999999999999855443 3
Q ss_pred ccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhc-ccceEEEEe
Q 010067 112 IPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLE-AGVIIDIEV 186 (519)
Q Consensus 112 IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~-~~~I~eI~V 186 (519)
..||.|+.+ +.|-.| |.-++.|.+|.+--.++|.+ .+ =-||.|..+
T Consensus 116 ~dlP~~L~~------------~GGW~n----------------~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 116 FDTPEALHS------------NGDFLN----------------RENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred CCCcHHHHH------------cCCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 569999962 333322 34468888888888888876 32 114666543
No 26
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.41 E-value=0.052 Score=59.37 Aligned_cols=112 Identities=15% Similarity=0.269 Sum_probs=84.4
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCC----ccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcc
Q 010067 35 VLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGP----RQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVV 110 (519)
Q Consensus 35 ~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p----~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~ 110 (519)
....-...+.|++.||++|++.-+..+=|..|+|.+. ++=-...|++|++.++++|++-.|-|. |
T Consensus 62 a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H---------- 130 (476)
T PRK09589 62 AIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H---------- 130 (476)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C----------
Confidence 3445567899999999999999999999999999752 344578899999999999999855553 3
Q ss_pred cccCChhhhhhhccCCCeeeecC-CCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc-cceEEEEe
Q 010067 111 TIPIPKWVLEIGETNPDIFYTNR-SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA-GVIIDIEV 186 (519)
Q Consensus 111 ~IpLP~WV~~~g~~~PDi~ytD~-~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~-~~I~eI~V 186 (519)
-.||.|+.+ + .|-.| |.-++.|.+|.+--.++|.+..+- =||.|..+
T Consensus 131 -~dlP~~L~~------------~yGGW~n----------------~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 131 -FEMPYHLVT------------EYGGWRN----------------RKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred -CCCCHHHHH------------hcCCcCC----------------hHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 569999952 2 23322 344688999988888888884321 15777654
No 27
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.36 E-value=0.058 Score=59.06 Aligned_cols=112 Identities=15% Similarity=0.321 Sum_probs=83.9
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC-C---ccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcc
Q 010067 35 VLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKG-P---RQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVV 110 (519)
Q Consensus 35 ~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~-p---~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~ 110 (519)
....-..++.|++.||++|++.-+..+=|..|+|.+ + ++=-...|++|++-++++|++-.|-|- |
T Consensus 68 a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H---------- 136 (478)
T PRK09593 68 AIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H---------- 136 (478)
T ss_pred ccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c----------
Confidence 334557889999999999999999999999999975 3 334478899999999999999855553 3
Q ss_pred cccCChhhhhhhccCCCeeeecC-CCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc-cceEEEEe
Q 010067 111 TIPIPKWVLEIGETNPDIFYTNR-SGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA-GVIIDIEV 186 (519)
Q Consensus 111 ~IpLP~WV~~~g~~~PDi~ytD~-~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~-~~I~eI~V 186 (519)
..||.|+.+ + .|-.| |.-++.|.+|.+--.++|.+-.+- =||.|..+
T Consensus 137 -~dlP~~L~~------------~~GGW~n----------------~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 185 (478)
T PRK09593 137 -FDCPMHLIE------------EYGGWRN----------------RKMVGFYERLCRTLFTRYKGLVKYWLTFNEINM 185 (478)
T ss_pred -cCCCHHHHh------------hcCCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEeecchhh
Confidence 569999962 2 23222 344688899988888888873320 15667654
No 28
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=95.34 E-value=0.26 Score=51.03 Aligned_cols=213 Identities=18% Similarity=0.331 Sum_probs=120.3
Q ss_pred HHHHHHHcCcceEEEe-ee-eeeeccCCCccccchhHHHHHHHHHHcCCcEE--EEEeeeccCCCCCCcccccCChhhhh
Q 010067 45 QLKELKAAGVDGIMVD-VW-WGIIESKGPRQYDWSAYRSLFELIQQYELKLQ--AIMSFHQCGGNVGDVVTIPIPKWVLE 120 (519)
Q Consensus 45 ~L~~LK~~GVdgV~vd-VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~--~imsfHqCGGNVGD~~~IpLP~WV~~ 120 (519)
..+.+-....+.|+.. .. |+.+|+ .+|+|||+.-+++++.|++.|++++ +++. |. -.|.||.+
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~-~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW-~~-----------~~P~w~~~ 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEP-EPGRFNFESADAILDWARENGIKVRGHTLVW-HS-----------QTPDWVFN 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHES-BTTBEE-HHHHHHHHHHHHTT-EEEEEEEEE-SS-----------SS-HHHHT
T ss_pred HHHHHHHHhCCeeeeccccchhhhcC-CCCccCccchhHHHHHHHhcCcceeeeeEEE-cc-----------cccceeee
Confidence 4555556667777765 23 999998 7999999999999999999999995 5554 42 37999984
Q ss_pred hhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc-cceEEEEe---eccCCC---C
Q 010067 121 IGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA-GVIIDIEV---GLGPAG---E 193 (519)
Q Consensus 121 ~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~-~~I~eI~V---GlGP~G---E 193 (519)
....+| .. -+..+..|+.+.+++..-.++ |.|....| -+...| .
T Consensus 93 ~~~~~~-----------~~------------------~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~ 143 (320)
T PF00331_consen 93 LANGSP-----------DE------------------KEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGG 143 (320)
T ss_dssp STTSSB-----------HH------------------HHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSS
T ss_pred ccCCCc-----------cc------------------HHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCcccc
Confidence 311111 00 145566666666655554443 45555544 222222 2
Q ss_pred CCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccccCCCcccccchhhHHHHH
Q 010067 194 LRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATASGHPEWELPDNAGTYNDKPESTEFFKTNGTYLSEQGNFFLTWY 273 (519)
Q Consensus 194 LRYPSyp~~~gW~~pGiGEFQCYDky~~~~f~~~a~~~gn~~WG~p~~ag~yn~~P~~t~FF~~~g~~~s~YGrFFL~WY 273 (519)
||- ..| +--+| +.|....|+.+-+..- ....|-| .|+....
T Consensus 144 ~r~------~~~-~~~lG-----~~yi~~aF~~A~~~~P------------------~a~L~~N--Dy~~~~~------- 184 (320)
T PF00331_consen 144 LRD------SPW-YDALG-----PDYIADAFRAAREADP------------------NAKLFYN--DYNIESP------- 184 (320)
T ss_dssp BCT------SHH-HHHHT-----TCHHHHHHHHHHHHHT------------------TSEEEEE--ESSTTST-------
T ss_pred ccC------Chh-hhccc-----HhHHHHHHHHHHHhCC------------------CcEEEec--cccccch-------
Confidence 222 112 11223 6788889988776521 2233333 1333222
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEecceeecccCCCchhhhhhcccCCCCCCChHHHHHHHhhcCcEEEEeeccc
Q 010067 274 SNKLMFHGDEILDEANKAFLGCKVKLAAKVSGIHWWYLADNHAAELTAGYYNLNDRDGYRPIARILSRHYGILNFTCLEM 353 (519)
Q Consensus 274 s~~L~~Hgdril~~A~~~F~g~~v~l~aKv~GIHWwy~t~SHaAElTAGyYN~~~rdGY~~Ia~m~~rh~~~l~fTclEM 353 (519)
.+.++++.+.+.+=. .+|+|-+===--|+....+ .+.....++.|+..|+.+++|=|++
T Consensus 185 -----~k~~~~~~lv~~l~~-~gvpIdgIG~Q~H~~~~~~---------------~~~i~~~l~~~~~~Gl~i~ITElDv 243 (320)
T PF00331_consen 185 -----AKRDAYLNLVKDLKA-RGVPIDGIGLQSHFDAGYP---------------PEQIWNALDRFASLGLPIHITELDV 243 (320)
T ss_dssp -----HHHHHHHHHHHHHHH-TTHCS-EEEEEEEEETTSS---------------HHHHHHHHHHHHTTTSEEEEEEEEE
T ss_pred -----HHHHHHHHHHHHHHh-CCCccceechhhccCCCCC---------------HHHHHHHHHHHHHcCCceEEEeeee
Confidence 445666666655432 2455433100113322222 2346677888888999999999999
Q ss_pred cCCCCC
Q 010067 354 RNSEQD 359 (519)
Q Consensus 354 ~d~e~~ 359 (519)
++.+.+
T Consensus 244 ~~~~~~ 249 (320)
T PF00331_consen 244 RDDDNP 249 (320)
T ss_dssp ESSSTT
T ss_pred cCCCCC
Confidence 998754
No 29
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.33 E-value=0.53 Score=51.78 Aligned_cols=149 Identities=14% Similarity=0.193 Sum_probs=99.9
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCc-ccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCc
Q 010067 34 NVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPR-QYD---WSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDV 109 (519)
Q Consensus 34 ~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~-~Yd---Ws~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~ 109 (519)
.....-...+.+++.||++|++..++.+=|..+-|.+.+ ..| -.-|++||+-+.+.|++-.|-|+
T Consensus 53 ~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~----------- 121 (460)
T COG2723 53 EASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY----------- 121 (460)
T ss_pred cccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----------
Confidence 344445677999999999999999999999999996655 444 56699999999999999855554
Q ss_pred ccccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc-cceEEEEeec
Q 010067 110 VTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA-GVIIDIEVGL 188 (519)
Q Consensus 110 ~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~-~~I~eI~VGl 188 (519)
...+|.|+.+.. .|-. .|.-|+.|..|.+--.++|.+..+- -|.-|+.|=+
T Consensus 122 -Hfd~P~~L~~~y-----------gGW~----------------nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~ 173 (460)
T COG2723 122 -HFDLPLWLQKPY-----------GGWE----------------NRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVV 173 (460)
T ss_pred -ccCCcHHHhhcc-----------CCcc----------------CHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhh
Confidence 367999998332 2322 2456788888888888888875531 1455665544
Q ss_pred cCCCCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHh
Q 010067 189 GPAGELRYPSYPESQGWVFPGIGEFQCYDKYLKAEFKEAATA 230 (519)
Q Consensus 189 GP~GELRYPSyp~~~gW~~pGiGEFQCYDky~~~~f~~~a~~ 230 (519)
. ++-..|-..|+...++-.=+-+--.+-++|++
T Consensus 174 ~---------~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~a 206 (460)
T COG2723 174 E---------LGYLYGGHPPGIVDPKAAYQVAHHMLLAHALA 206 (460)
T ss_pred c---------ccccccccCCCccCHHHHHHHHHHHHHHHHHH
Confidence 3 11122233466665543333343444455543
No 30
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=93.05 E-value=0.96 Score=47.98 Aligned_cols=119 Identities=17% Similarity=0.339 Sum_probs=75.1
Q ss_pred eEEEeee---eeeeccCCCccccchhHHHHHHHHHHcCCcE--EEEEeeeccCCCCCCcccccCChhhhhhhccCCCeee
Q 010067 56 GIMVDVW---WGIIESKGPRQYDWSAYRSLFELIQQYELKL--QAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFY 130 (519)
Q Consensus 56 gV~vdVW---WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv--~~imsfHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~y 130 (519)
.+-+.+| |..+|+ .+|+|+|..=+++++.||++||++ +..+.-| ..|.|+.
T Consensus 59 n~iTpenemKwe~i~p-~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~------------q~P~W~~----------- 114 (345)
T COG3693 59 NQITPENEMKWEAIEP-ERGRFNFEAADAIANFARKHNMPLHGHTLVWHS------------QVPDWLF----------- 114 (345)
T ss_pred cccccccccccccccC-CCCccCccchHHHHHHHHHcCCeeccceeeecc------------cCCchhh-----------
Confidence 4567777 999998 899999999999999999999987 3333332 3788875
Q ss_pred ecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc-cceEEEEeeccCCCCCCCCCCCCCCCCccCC
Q 010067 131 TNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA-GVIIDIEVGLGPAGELRYPSYPESQGWVFPG 209 (519)
Q Consensus 131 tD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~-~~I~eI~VGlGP~GELRYPSyp~~~gW~~pG 209 (519)
.|+ +| +.--+++++++...-..+|..-+-+ +||.|+- --.| ++.++ -|..-+
T Consensus 115 ~~e--------~~----------~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~v-dd~g-------~~R~s-~w~~~~ 167 (345)
T COG3693 115 GDE--------LS----------KEALAKMVEEHIKTVVGRYKGSVASWDVVNEAV-DDQG-------SLRRS-AWYDGG 167 (345)
T ss_pred ccc--------cC----------hHHHHHHHHHHHHHHHHhccCceeEEEeccccc-CCCc-------hhhhh-hhhccC
Confidence 222 11 2223467777766666665552211 2344432 2222 33332 265545
Q ss_pred CcccccccHHHHHHHHHHHHh
Q 010067 210 IGEFQCYDKYLKAEFKEAATA 230 (519)
Q Consensus 210 iGEFQCYDky~~~~f~~~a~~ 230 (519)
.| .+|++.+|+.+.++
T Consensus 168 ~g-----pd~I~~aF~~Area 183 (345)
T COG3693 168 TG-----PDYIKLAFHIAREA 183 (345)
T ss_pred Cc-----cHHHHHHHHHHHhh
Confidence 55 48999999988774
No 31
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=91.85 E-value=0.26 Score=53.79 Aligned_cols=99 Identities=17% Similarity=0.358 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHH-HcCcceEEEeeeeeee-------cc-CCCc--cccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 010067 39 KDKLESQLKELK-AAGVDGIMVDVWWGII-------ES-KGPR--QYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVG 107 (519)
Q Consensus 39 ~~~~~~~L~~LK-~~GVdgV~vdVWWGiV-------E~-~~p~--~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVG 107 (519)
...++.+|+.++ ++|+..|++ ||+. .. .+++ .|||+..+++++.+.+.|||..+-|||
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f-------- 106 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGF-------- 106 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-S--------
T ss_pred hHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEe--------
Confidence 357888999997 799999975 4433 11 1233 399999999999999999999999999
Q ss_pred CcccccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHh
Q 010067 108 DVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFD 174 (519)
Q Consensus 108 D~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~ 174 (519)
-|.++... +.-.|. .+..++ |- .-.+.+++++++|..++.+
T Consensus 107 ------~p~~~~~~----~~~~~~------~~~~~~------pp----~~~~~W~~lv~~~~~h~~~ 147 (486)
T PF01229_consen 107 ------MPMALASG----YQTVFW------YKGNIS------PP----KDYEKWRDLVRAFARHYID 147 (486)
T ss_dssp ------B-GGGBSS------EETT------TTEE-S-------B----S-HHHHHHHHHHHHHHHHH
T ss_pred ------chhhhcCC----CCcccc------ccCCcC------Cc----ccHHHHHHHHHHHHHHHHh
Confidence 67777521 111111 112223 11 2358899999999999987
No 32
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=91.40 E-value=0.36 Score=50.94 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeec
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQ 101 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHq 101 (519)
+.-|+-||+.||+.|++-|| |.|...|..|...-.++++-++++|||| .|.||-
T Consensus 27 ~d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~v--lldfHY 80 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKV--LLDFHY 80 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EE--EEEE-S
T ss_pred CCHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeE--EEeecc
Confidence 45688999999999999997 6664458889999999999999999999 899993
No 33
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=91.31 E-value=1.1 Score=45.37 Aligned_cols=118 Identities=19% Similarity=0.357 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhh
Q 010067 42 LESQLKELKAAGVDGIMVDVWWGIIESKGPRQYD---WSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWV 118 (519)
Q Consensus 42 ~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV 118 (519)
+...++++.++|+++|.++.-|+.-.--+|..|. +-+++++++-+++.|.++ .+|-|| |.+ ++=.++
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~----~lH~cG-~~~-----~~~~~l 239 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPV----IHHNCG-DTA-----PILELM 239 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCce----EEEECC-Cch-----hHHHHH
Confidence 4456677788899999999988743322455565 999999999999998765 569995 432 344455
Q ss_pred hhhhccCCCeeeecCCCCc--------cccccccccCCccCCCCCChHHHHHHHHHHHHHHHH
Q 010067 119 LEIGETNPDIFYTNRSGNR--------NKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMF 173 (519)
Q Consensus 119 ~~~g~~~PDi~ytD~~G~r--------n~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~ 173 (519)
.+. ..|++-.|..-.- .+-||.-++|..-+|..-|| +.=++..+...+.+.
T Consensus 240 ~~~---~~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~-eei~~~v~~~l~~~~ 298 (330)
T cd03465 240 ADL---GADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSP-EEIKEEVKELLEKLL 298 (330)
T ss_pred HHh---CCCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCH-HHHHHHHHHHHHHHh
Confidence 533 3466666543110 13466667776522333344 333344444444443
No 34
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=89.89 E-value=1.1 Score=42.61 Aligned_cols=58 Identities=14% Similarity=0.407 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC--Cccc-cc-------hhHHHHHHHHHHcCCcEEEEEee
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKG--PRQY-DW-------SAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~--p~~Y-dW-------s~Y~~l~~mv~~~GLKv~~imsf 99 (519)
.+++|++.|+.||++|++.|-+- |.-.+... |-++ ++ +....+++.|.+.|+|| +++.
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv--~~Gl 85 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKV--FVGL 85 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEE--EEeC
Confidence 67899999999999999999776 55544422 2222 11 36889999999999999 5554
No 35
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=88.11 E-value=0.85 Score=45.72 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeecc--CCCc---cccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCC
Q 010067 41 KLESQLKELKAAGVDGIMVDVWWGIIES--KGPR---QYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIP 115 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdVWWGiVE~--~~p~---~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP 115 (519)
.+.+.++++.++|+++|.++.=|+.... -+|. +|-+.+++++++.+++.|.++ + .|-||+. -++=
T Consensus 145 ~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~--~--lH~cg~~------~~~~ 214 (306)
T cd00465 145 FILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI--V--HHSCYDA------ADLL 214 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce--E--EEECCCH------HHHH
Confidence 4556677889999999999987765431 1344 444899999999888888665 3 4999974 1222
Q ss_pred hhhhhhhccCCCeeeecCCC-Cc--------cccccccccCCccCCCCCChHHHHHHHHHHHHHH
Q 010067 116 KWVLEIGETNPDIFYTNRSG-NR--------NKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKN 171 (519)
Q Consensus 116 ~WV~~~g~~~PDi~ytD~~G-~r--------n~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~ 171 (519)
..+. +...|++-.|..- .. .+-+|.-++|.. ++ ..|+ +.=.+..++..+.
T Consensus 215 ~~l~---~~~~d~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~-~~-~~~~-e~i~~~v~~~l~~ 273 (306)
T cd00465 215 EEMI---QLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPG-YL-PATD-EECIAKVEELVER 273 (306)
T ss_pred HHHH---HhCcceEecccccCCHHHHHHHhCCCEEEECCCCcc-cc-CCCH-HHHHHHHHHHHHH
Confidence 2333 2334554433321 00 134677788776 33 3454 4344444444433
No 36
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=87.51 E-value=0.62 Score=48.05 Aligned_cols=80 Identities=26% Similarity=0.425 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhh
Q 010067 41 KLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLE 120 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~ 120 (519)
++++-|+.+++.||.||.||-+ .+++|+-=..|+++++.|.+++|- +-||.|= .|.=+.
T Consensus 107 ~~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~Lm----vnfHg~~----------kPtG~~- 165 (273)
T PF10566_consen 107 QLDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKLM----VNFHGAT----------KPTGLR- 165 (273)
T ss_dssp CHHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-E----EEETTS-------------TTHH-
T ss_pred HHHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCcE----EEecCCc----------CCCccc-
Confidence 3699999999999999999986 458899999999999999999885 4899543 454222
Q ss_pred hhccCCCeeeecCCCCccccccccc
Q 010067 121 IGETNPDIFYTNRSGNRNKEYLTIG 145 (519)
Q Consensus 121 ~g~~~PDi~ytD~~G~rn~E~lSlg 145 (519)
+.+|.++ .+.|.|-.|+-.+.
T Consensus 166 --RTyPN~m--T~EgVrG~E~~~~~ 186 (273)
T PF10566_consen 166 --RTYPNLM--TREGVRGQEYNKWS 186 (273)
T ss_dssp --HCSTTEE--EE--S--GGGGGTT
T ss_pred --ccCccHH--HHHHhhhhhhcccc
Confidence 6888764 47899999984433
No 37
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=86.46 E-value=4 Score=43.40 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeecc----CCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIES----KGPRQYDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
+.-|..||++||.-|++-||=-=-.. -+-|.=|-..--++.+-+++.|+|| .+-||
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKV--l~dFH 125 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKV--LLDFH 125 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEE--Eeecc
Confidence 55688999999999999999321111 1234455555566677777889999 99999
No 38
>PRK01060 endonuclease IV; Provisional
Probab=85.53 E-value=1.6 Score=43.17 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=41.6
Q ss_pred eeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc-----cchhHHHHHHHHHHcCCcE
Q 010067 24 MLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY-----DWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 24 MlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y-----dWs~Y~~l~~mv~~~GLKv 93 (519)
|+++++.+.- .+.++..|+.++++|+++|++.+. .|..+ +=...+++-+++++.||++
T Consensus 1 ~~~~g~~~~~-----~~~~~~~l~~~~~~G~d~vEl~~~-------~p~~~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 1 MKLIGAHVSA-----AGGLEGAVAEAAEIGANAFMIFTG-------NPQQWKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCeEEEeeec-----CCCHHHHHHHHHHcCCCEEEEECC-------CCCCCcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 6677776521 122789999999999999999653 23333 2234677888999999997
No 39
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=84.55 E-value=2.4 Score=45.57 Aligned_cols=55 Identities=18% Similarity=0.403 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeec
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQ 101 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHq 101 (519)
..+.|+++++..|++|+||..+++. .+..+.+.....+++.|++.|+|| .+||--
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKl--f~SfD~ 69 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKL--FFSFDM 69 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEE--EEEecc
Confidence 5689999999999999999999996 344567889999999999999999 888843
No 40
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=84.01 E-value=2.1 Score=43.75 Aligned_cols=72 Identities=13% Similarity=0.214 Sum_probs=53.9
Q ss_pred CCccEEEeeccc---eeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 010067 17 NYVPIYVMLPLG---VITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 17 ~~vpv~VMlPLd---~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 93 (519)
-.+||+||+=-- -+-+. ..-+.+.++++.+|++|++||.+.+= ..+++.|...-++|++.++ |+++
T Consensus 50 ~~ipv~vMIRPR~gdF~Ys~---~E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~~~Li~~a~--~~~v 118 (248)
T PRK11572 50 VTIPVHPIIRPRGGDFCYSD---GEFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRMRKIMAAAG--PLAV 118 (248)
T ss_pred cCCCeEEEEecCCCCCCCCH---HHHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHHHHHHHHhc--CCce
Confidence 358999997432 11111 23378999999999999999998764 4588999999999999994 7887
Q ss_pred EEEEee
Q 010067 94 QAIMSF 99 (519)
Q Consensus 94 ~~imsf 99 (519)
.-=+.|
T Consensus 119 TFHRAf 124 (248)
T PRK11572 119 TFHRAF 124 (248)
T ss_pred EEechh
Confidence 444455
No 41
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=83.46 E-value=1.9 Score=44.39 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQYD---WSAYRSLFELIQQYELKLQAIMSFHQCGG 104 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~imsfHqCGG 104 (519)
...++++.++|+++|.+..-|+.-.--+|.+|. +.+++++++-+++.|... + .|-||.
T Consensus 183 ~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~--i--lH~CG~ 243 (340)
T TIGR01463 183 IAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGIT--V--LHICGF 243 (340)
T ss_pred HHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCce--E--EEECCC
Confidence 455667789999999888778642223455444 999999999999987432 3 588975
No 42
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=82.93 E-value=1.9 Score=42.66 Aligned_cols=67 Identities=18% Similarity=0.359 Sum_probs=46.0
Q ss_pred CCCccEEEeecc---ceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCc
Q 010067 16 PNYVPIYVMLPL---GVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELK 92 (519)
Q Consensus 16 ~~~vpv~VMlPL---d~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLK 92 (519)
...+||+||.=- |-+-+.. .-+.+..+++.+|++|++||.+.+ +- .+++.|-..-++|.+.++ |+.
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys~~---E~~~M~~dI~~~~~~GadG~VfG~----L~--~dg~iD~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYSDE---EIEIMKEDIRMLRELGADGFVFGA----LT--EDGEIDEEALEELIEAAG--GMP 116 (201)
T ss_dssp HTTSEEEEE--SSSS-S---HH---HHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSE
T ss_pred hcCCceEEEECCCCCCccCCHH---HHHHHHHHHHHHHHcCCCeeEEEe----EC--CCCCcCHHHHHHHHHhcC--CCe
Confidence 457899999743 2222222 237899999999999999999865 33 588999999999999987 777
Q ss_pred E
Q 010067 93 L 93 (519)
Q Consensus 93 v 93 (519)
+
T Consensus 117 ~ 117 (201)
T PF03932_consen 117 V 117 (201)
T ss_dssp E
T ss_pred E
Confidence 7
No 43
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=82.47 E-value=14 Score=37.99 Aligned_cols=83 Identities=12% Similarity=0.219 Sum_probs=56.6
Q ss_pred cCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCcccc-----chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCc
Q 010067 37 EDKDKLESQLKELKAAG--VDGIMVDVWWGIIESKGPRQYD-----WSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDV 109 (519)
Q Consensus 37 ~~~~~~~~~L~~LK~~G--VdgV~vdVWWGiVE~~~p~~Yd-----Ws~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~ 109 (519)
.+.+.+.+-++++++.| ++.|.+|.-|-. .-+.|. |-.-+++++-+++.|+|+ ++..+
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~--~l~i~--------- 91 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRV--TLWVH--------- 91 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeE--EEEEC---------
Confidence 46788899999999998 689999986532 223333 345788888899999998 66664
Q ss_pred ccccCChhhhhhhccCCCeeeecCCC
Q 010067 110 VTIPIPKWVLEIGETNPDIFYTNRSG 135 (519)
Q Consensus 110 ~~IpLP~WV~~~g~~~PDi~ytD~~G 135 (519)
+.|..-.=+-+++.+ .+.+.++.+|
T Consensus 92 P~i~~~s~~~~e~~~-~g~~vk~~~g 116 (303)
T cd06592 92 PFINTDSENFREAVE-KGYLVSEPSG 116 (303)
T ss_pred CeeCCCCHHHHhhhh-CCeEEECCCC
Confidence 333322223334333 4788999888
No 44
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=80.24 E-value=2.9 Score=44.37 Aligned_cols=80 Identities=13% Similarity=0.262 Sum_probs=52.9
Q ss_pred ccEEEeeccceeeC-----CC----cccCHHHHH-----------HHHHHHHHcCcce-EEEeee--eeeeccCCCcccc
Q 010067 19 VPIYVMLPLGVITN-----DN----VLEDKDKLE-----------SQLKELKAAGVDG-IMVDVW--WGIIESKGPRQYD 75 (519)
Q Consensus 19 vpv~VMlPLd~v~~-----~~----~~~~~~~~~-----------~~L~~LK~~GVdg-V~vdVW--WGiVE~~~p~~Yd 75 (519)
+-..+..|++++.. .+ -.++++.+. .-+++..++|+++ |.+..+ |+.+ =+|.+|+
T Consensus 173 i~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~--lsp~~f~ 250 (378)
T cd03308 173 AGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPF--LRPKQFE 250 (378)
T ss_pred cceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCc--cCHHHHH
Confidence 34478899985542 11 123444333 3445566789998 777776 4333 2466666
Q ss_pred ---chhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010067 76 ---WSAYRSLFELIQQYELKLQAIMSFHQCGG 104 (519)
Q Consensus 76 ---Ws~Y~~l~~mv~~~GLKv~~imsfHqCGG 104 (519)
|-+++++++-+++.|.++ |+ |-||.
T Consensus 251 ef~~P~~k~i~~~i~~~g~~~--il--h~cG~ 278 (378)
T cd03308 251 KFYWPSFKKVVEGLAARGQRI--FL--FFEGD 278 (378)
T ss_pred HHHHHHHHHHHHHHHhcCCCE--EE--EcCCC
Confidence 999999999999988765 54 99984
No 45
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=79.28 E-value=23 Score=40.11 Aligned_cols=63 Identities=16% Similarity=0.354 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCcceEEE-eee---------------eeeecc--CC-Cccc---------cchhHHHHHHHHHHcCCc
Q 010067 41 KLESQLKELKAAGVDGIMV-DVW---------------WGIIES--KG-PRQY---------DWSAYRSLFELIQQYELK 92 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~v-dVW---------------WGiVE~--~~-p~~Y---------dWs~Y~~l~~mv~~~GLK 92 (519)
.+...|..||++||+.|.+ +|. ||.-=. -. +..| ....++++++.+++.||+
T Consensus 165 g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~ 244 (605)
T TIGR02104 165 GVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIR 244 (605)
T ss_pred cchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCE
Confidence 3446799999999999976 222 442100 00 0001 024699999999999999
Q ss_pred EEEEEee-eccC
Q 010067 93 LQAIMSF-HQCG 103 (519)
Q Consensus 93 v~~imsf-HqCG 103 (519)
|..=+-| |-|+
T Consensus 245 VilDvV~NH~~~ 256 (605)
T TIGR02104 245 VIMDVVYNHTYS 256 (605)
T ss_pred EEEEEEcCCccC
Confidence 9776667 5443
No 46
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=79.24 E-value=18 Score=36.49 Aligned_cols=114 Identities=16% Similarity=0.294 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHcC-cceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhh
Q 010067 41 KLESQLKELKAAG-VDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVL 119 (519)
Q Consensus 41 ~~~~~L~~LK~~G-VdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~ 119 (519)
...+-|+.+-.+| +|.|.|+..++ =...+++.+.+++.|.|| |.|+|.=.+ +++.|-+
T Consensus 96 ~~~~ll~~~~~~~~~d~vDiEl~~~-----------~~~~~~l~~~~~~~~~kv--I~S~H~f~~--------tP~~~~l 154 (253)
T PRK02412 96 EYLALIKAVIKSGLPDYIDVELFSG-----------KDVVKEMVAFAHEHGVKV--VLSYHDFEK--------TPPKEEI 154 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccCC-----------hHHHHHHHHHHHHcCCEE--EEeeCCCCC--------CcCHHHH
Confidence 3334467677778 99999987542 134678889999999988 999994332 2344422
Q ss_pred hhhccCCCeeeecCCCCccccccccccCCccC-CCCCChHHHHHHHHHHHHHHHHhhhcccceEEEEeeccCCCCC
Q 010067 120 EIGETNPDIFYTNRSGNRNKEYLTIGVDHKPL-FDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGEL 194 (519)
Q Consensus 120 ~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pv-l~GRTpi~~Y~dfm~sF~~~f~~~l~~~~I~eI~VGlGP~GEL 194 (519)
. ..-.++-++|+|-+-+ ..-+++-+..+ .+ .|..++..-. ..+.=|.++||+.|-+
T Consensus 155 ~---------------~~~~~~~~~gaDivKia~~a~~~~D~~~-ll-~~~~~~~~~~--~~~P~i~~~MG~~G~~ 211 (253)
T PRK02412 155 V---------------ERLRKMESLGADIVKIAVMPQSEQDVLT-LL-NATREMKELY--ADQPLITMSMGKLGRI 211 (253)
T ss_pred H---------------HHHHHHHHhCCCEEEEEecCCCHHHHHH-HH-HHHHHHHhcC--CCCCEEEEeCCCCchH
Confidence 1 0122455667776665 34445444433 22 3344443310 1244578999998864
No 47
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=78.16 E-value=4.2 Score=39.37 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccC-CCccc-------------cchhHHHHHHHHHHcCCcEEEEEee-eccCC
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESK-GPRQY-------------DWSAYRSLFELIQQYELKLQAIMSF-HQCGG 104 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~-~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~imsf-HqCGG 104 (519)
+.|.+.|..||++||++|.+-- +.|.. +..-| .+..+++|++.|++.|+||..=+-+ |-+..
T Consensus 4 ~gi~~kLdyl~~lGv~~I~l~P---i~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNAIWLSP---IFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp HHHHHTHHHHHHHTESEEEESS----EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred HHHHHhhHHHHHcCCCceeccc---ccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 6788899999999999998852 33321 11112 2456889999999999999554444 65554
Q ss_pred C
Q 010067 105 N 105 (519)
Q Consensus 105 N 105 (519)
+
T Consensus 81 ~ 81 (316)
T PF00128_consen 81 H 81 (316)
T ss_dssp S
T ss_pred c
Confidence 3
No 48
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=76.96 E-value=8.6 Score=41.00 Aligned_cols=85 Identities=12% Similarity=0.249 Sum_probs=57.3
Q ss_pred cCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCCc
Q 010067 37 EDKDKLESQLKELKAAG--VDGIMVDVWWGIIESKGPRQYDWS-----AYRSLFELIQQYELKLQAIMSFHQCGGNVGDV 109 (519)
Q Consensus 37 ~~~~~~~~~L~~LK~~G--VdgV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~ 109 (519)
.+.+.+.+-++.+++.| +|++.+|.+|+.-. +.|.|+ ..+++++.+++.|+|+ ++..|
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~--~~~~~--------- 104 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKV--VLWVH--------- 104 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EE--EEEEE---------
T ss_pred CCHHHHHHHHHHHHHcCCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEE--EEEee---------
Confidence 55788888999998865 68999999987622 245554 5799999999999998 77776
Q ss_pred ccccCChh---hhhhhccCCCeeeecCCCCc
Q 010067 110 VTIPIPKW---VLEIGETNPDIFYTNRSGNR 137 (519)
Q Consensus 110 ~~IpLP~W---V~~~g~~~PDi~ytD~~G~r 137 (519)
+.|....- .-+.+++. ++++++.+|..
T Consensus 105 P~v~~~~~~~~~~~~~~~~-~~~v~~~~g~~ 134 (441)
T PF01055_consen 105 PFVSNDSPDYENYDEAKEK-GYLVKNPDGSP 134 (441)
T ss_dssp SEEETTTTB-HHHHHHHHT-T-BEBCTTSSB
T ss_pred cccCCCCCcchhhhhHhhc-CceeecccCCc
Confidence 44444443 33333333 78999999843
No 49
>PLN02229 alpha-galactosidase
Probab=76.25 E-value=4.6 Score=44.32 Aligned_cols=76 Identities=17% Similarity=0.330 Sum_probs=51.8
Q ss_pred eCCCccc---CHHHHHHHHHH-----HHHcCcceEEEeeeeeeeccCC-------CccccchhHHHHHHHHHHcCCcEEE
Q 010067 31 TNDNVLE---DKDKLESQLKE-----LKAAGVDGIMVDVWWGIIESKG-------PRQYDWSAYRSLFELIQQYELKLQA 95 (519)
Q Consensus 31 ~~~~~~~---~~~~~~~~L~~-----LK~~GVdgV~vdVWWGiVE~~~-------p~~YdWs~Y~~l~~mv~~~GLKv~~ 95 (519)
+.+|.+. +++.+.+...+ ||++|.+-|.||.=|...++.. |.+|- +|.+.|++.+++.|||.=.
T Consensus 68 nSWn~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKfGI 146 (427)
T PLN02229 68 NSWNFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKLGI 146 (427)
T ss_pred EchhhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCceEE
Confidence 3444443 67888888887 5999999999998664333322 33444 6899999999999999832
Q ss_pred E--EeeeccCCCCC
Q 010067 96 I--MSFHQCGGNVG 107 (519)
Q Consensus 96 i--msfHqCGGNVG 107 (519)
. -....|+|+.|
T Consensus 147 y~d~G~~TC~~~pG 160 (427)
T PLN02229 147 YSDAGVFTCQVRPG 160 (427)
T ss_pred eccCCCcccCCCCC
Confidence 2 23345665433
No 50
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=75.34 E-value=15 Score=37.52 Aligned_cols=88 Identities=9% Similarity=0.255 Sum_probs=59.4
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 010067 36 LEDKDKLESQLKELKAAG--VDGIMVDVWWGIIESKGPRQYDWS-----AYRSLFELIQQYELKLQAIMSFHQCGGNVGD 108 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~G--VdgV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD 108 (519)
-.+.+.+.+-++.+|++| +|.+.+|.=|- ...+-+.|+|+ --+++++-+++.|+|+ ++..|-. |+.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~--~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~--~~~~~P~---i~~ 92 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM--KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKV--CLWINPY---IAQ 92 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc--cCCcceeeEECcccCCCHHHHHHHHHHCCCeE--EEEecCC---CCC
Confidence 367788999999999999 88899997443 21111245554 6889999999999998 7766632 211
Q ss_pred cccccCChhhhhhhccCCCeeeecCCCCc
Q 010067 109 VVTIPIPKWVLEIGETNPDIFYTNRSGNR 137 (519)
Q Consensus 109 ~~~IpLP~WV~~~g~~~PDi~ytD~~G~r 137 (519)
+ -| +-++++ .++.|.++.+|..
T Consensus 93 ~----~~--~~~e~~-~~g~~v~~~~g~~ 114 (308)
T cd06593 93 K----SP--LFKEAA-EKGYLVKKPDGSV 114 (308)
T ss_pred C----ch--hHHHHH-HCCeEEECCCCCe
Confidence 1 12 233433 4588999888764
No 51
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.26 E-value=59 Score=35.91 Aligned_cols=155 Identities=15% Similarity=0.212 Sum_probs=99.4
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeee-eeee------ccCCCc-------cccchhHHHHHHHHHHcCCcEEEEEe
Q 010067 33 DNVLEDKDKLESQLKELKAAGVDGIMVDVW-WGII------ESKGPR-------QYDWSAYRSLFELIQQYELKLQAIMS 98 (519)
Q Consensus 33 ~~~~~~~~~~~~~L~~LK~~GVdgV~vdVW-WGiV------E~~~p~-------~YdWs~Y~~l~~mv~~~GLKv~~ims 98 (519)
...+..+.++...|..|..+|++.|-+-|| +|.. .+...+ .=.|.-...+++.+++.||+|++=+.
T Consensus 57 ~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~ 136 (418)
T COG1649 57 SRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFN 136 (418)
T ss_pred CcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechh
Confidence 456778899999999999999999999999 8843 332222 11344556677778899999988777
Q ss_pred eeccCCCCCCcccccCChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc
Q 010067 99 FHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA 178 (519)
Q Consensus 99 fHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~ 178 (519)
|=.-+=+-. .-+.-=|.|.. .+.|+-.|....|.. +..+|++-- +.=++|+.+...+...
T Consensus 137 ~~~~a~~~s-~~~~~~p~~~~---~~~~~~~~~~~~~~~----------~~~~ldPg~--Pevq~~i~~lv~evV~---- 196 (418)
T COG1649 137 PYRMAPPTS-PLTKRHPHWLT---TKRPGWVYVRHQGWG----------KRVWLDPGI--PEVQDFITSLVVEVVR---- 196 (418)
T ss_pred hcccCCCCC-hhHhhCCCCcc---cCCCCeEEEecCCce----------eeeEeCCCC--hHHHHHHHHHHHHHHh----
Confidence 721111000 01112355665 444565555555543 334555444 6778999999888777
Q ss_pred cceEEEEeeccCCCCCCCCCCCCC--CCCccCCCcccccccHHHHHHHHH
Q 010067 179 GVIIDIEVGLGPAGELRYPSYPES--QGWVFPGIGEFQCYDKYLKAEFKE 226 (519)
Q Consensus 179 ~~I~eI~VGlGP~GELRYPSyp~~--~gW~~pGiGEFQCYDky~~~~f~~ 226 (519)
+|....-. +-|-||.-+ .||++++.--|.
T Consensus 197 ----------------~YdvDGIQfDd~fy~~~~~---gy~~~~~~~y~~ 227 (418)
T COG1649 197 ----------------NYDVDGIQFDDYFYYPIPF---GYDPDTVTLYRY 227 (418)
T ss_pred ----------------CCCCCceecceeecccCcc---ccCchHHHHHHh
Confidence 78877642 225555542 788888765544
No 52
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=74.21 E-value=11 Score=33.84 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHc-CCcEEEEEeee
Q 010067 39 KDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQY-ELKLQAIMSFH 100 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~-GLKv~~imsfH 100 (519)
.+.+...++.||+.|||.|.+..= ++-. .|.- ---.++++.+++++. |++| |..||
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC--~~~~-~~~~-~CP~~~~~~~~I~~~~gi~V--V~GTH 107 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSC--MVKG-NPHG-PCPHIDEIKKIIEEKFGIEV--VEGTH 107 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCC--EecC-CCCC-CCCCHHHHHHHHHHHhCCCE--eeecC
Confidence 567788999999999998887642 3322 1111 334499999999999 9988 99988
No 53
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.13 E-value=6.9 Score=38.81 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=45.1
Q ss_pred eccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchh--HHHHHHHHHHcCCcEEEE
Q 010067 25 LPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSA--YRSLFELIQQYELKLQAI 96 (519)
Q Consensus 25 lPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~--Y~~l~~mv~~~GLKv~~i 96 (519)
+||++.. ..++....++..++.+|++|+++|++.+. . .. .....++|+. .+++-++++++||+|..+
T Consensus 8 ~~~~~~~--~~~~~~~~~~e~~~~~~~~G~~~iEl~~~-~-~~-~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYE--KALPAGECWLEKLAIAKTAGFDFVEMSVD-E-SD-ERLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeec--ccCCCCCCHHHHHHHHHHcCCCeEEEecC-c-cc-cchhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 4566553 22333446799999999999999999643 0 00 1123456654 668899999999999654
No 54
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=73.99 E-value=12 Score=42.07 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCC--ccccch---hHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccC
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESKGP--RQYDWS---AYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPI 114 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p--~~YdWs---~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpL 114 (519)
-..+.|++.||++||++-+..+-|+.+=|.|. +..|.. .|+.|++-..+.|++-.|-| || --|
T Consensus 91 h~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fH-----------wDl 158 (524)
T KOG0626|consen 91 HRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FH-----------WDL 158 (524)
T ss_pred hhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ec-----------CCC
Confidence 46789999999999999999999999999887 557765 59999999999999997776 46 349
Q ss_pred Chhhh
Q 010067 115 PKWVL 119 (519)
Q Consensus 115 P~WV~ 119 (519)
|+|+.
T Consensus 159 Pq~Le 163 (524)
T KOG0626|consen 159 PQALE 163 (524)
T ss_pred CHHHH
Confidence 99995
No 55
>PLN02361 alpha-amylase
Probab=73.90 E-value=9.7 Score=41.31 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccc-------------hhHHHHHHHHHHcCCcEEEEEee-eccCC
Q 010067 39 KDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDW-------------SAYRSLFELIQQYELKLQAIMSF-HQCGG 104 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdW-------------s~Y~~l~~mv~~~GLKv~~imsf-HqCGG 104 (519)
-+.|++.|..||++||++|-+.-=. |..++..|+- +.+++|++.+++.|+||.+=+-+ |-||.
T Consensus 28 w~~i~~kl~~l~~lG~t~iwl~P~~---~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~ 104 (401)
T PLN02361 28 WRNLEGKVPDLAKSGFTSAWLPPPS---QSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGT 104 (401)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCC---cCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccCC
Confidence 4788999999999999999876532 3333333333 46899999999999999554444 87775
Q ss_pred CC
Q 010067 105 NV 106 (519)
Q Consensus 105 NV 106 (519)
.-
T Consensus 105 ~~ 106 (401)
T PLN02361 105 TQ 106 (401)
T ss_pred CC
Confidence 43
No 56
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=73.65 E-value=17 Score=35.53 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEE
Q 010067 41 KLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQ 94 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 94 (519)
.++..|+.++++|++||++.. | ++. ...++.++++++||++.
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~---------~--~~~-~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF---------P--YDW-DAEALKARLAAAGLEQV 56 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC---------C--ccC-CHHHHHHHHHHcCCeEE
Confidence 578899999999999998842 1 122 25778889999999984
No 57
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=73.28 E-value=8.4 Score=38.61 Aligned_cols=55 Identities=20% Similarity=0.068 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCcceEEEeeeeeee---ccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGII---ESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiV---E~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
+..|+.||++|++.|.++.= +.- +.-. +..+|..+.+.++.++++|+++.+-+-+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence 56789999999999988733 211 1111 2468889999999999999998555544
No 58
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=72.80 E-value=14 Score=37.68 Aligned_cols=89 Identities=20% Similarity=0.288 Sum_probs=61.9
Q ss_pred CccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 010067 18 YVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIM 97 (519)
Q Consensus 18 ~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~im 97 (519)
.+|+.+|.=...|- .-.+++=++.+|++||+||-++ . .-+...+++++.++++||++.+.+
T Consensus 89 ~~p~vlm~Y~N~i~-------~~G~e~f~~~~~~aGvdGviip--------D----Lp~ee~~~~~~~~~~~gl~~I~lv 149 (258)
T PRK13111 89 TIPIVLMTYYNPIF-------QYGVERFAADAAEAGVDGLIIP--------D----LPPEEAEELRAAAKKHGLDLIFLV 149 (258)
T ss_pred CCCEEEEecccHHh-------hcCHHHHHHHHHHcCCcEEEEC--------C----CCHHHHHHHHHHHHHcCCcEEEEe
Confidence 45776776444432 2245778999999999999996 1 123577899999999999996544
Q ss_pred eeeccCCCCCCcccccCChhhhhhhccCCC-eeeecCCCCc
Q 010067 98 SFHQCGGNVGDVVTIPIPKWVLEIGETNPD-IFYTNRSGNR 137 (519)
Q Consensus 98 sfHqCGGNVGD~~~IpLP~WV~~~g~~~PD-i~ytD~~G~r 137 (519)
+- + +.+..+..+.+..++ |++....|..
T Consensus 150 ap-----------~-t~~eri~~i~~~s~gfIY~vs~~GvT 178 (258)
T PRK13111 150 AP-----------T-TTDERLKKIASHASGFVYYVSRAGVT 178 (258)
T ss_pred CC-----------C-CCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 43 2 246788877777777 5555776653
No 59
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=72.19 E-value=7.4 Score=38.76 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccch--hHHHHHHHHHHcCCcEEEE
Q 010067 39 KDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWS--AYRSLFELIQQYELKLQAI 96 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs--~Y~~l~~mv~~~GLKv~~i 96 (519)
.-.|+..|+.++++|+++|++.++-. + ..+..++|+ .-.++.++++++||+|..+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDET--D-DRLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCc--c-chhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 45789999999999999999964421 1 123344544 4667888999999999544
No 60
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=72.04 E-value=46 Score=32.59 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010067 41 KLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGG 104 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGG 104 (519)
...+-|+.+-.+|++.|.|+..+ +-.+++++.+++.|-|| |+|+|.=.+
T Consensus 77 ~~~~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~~~ki--I~S~H~f~~ 125 (225)
T cd00502 77 EYLELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKGNTKI--IGSYHDFSG 125 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhCCCEE--EEEeccCCC
Confidence 33345666777889999887654 34777888888888888 999995444
No 61
>smart00642 Aamy Alpha-amylase domain.
Probab=71.96 E-value=19 Score=34.15 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=46.8
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeecc-CCCccc-------------cchhHHHHHHHHHHcCCcEEEEEeeecc
Q 010067 37 EDKDKLESQLKELKAAGVDGIMVDVWWGIIES-KGPRQY-------------DWSAYRSLFELIQQYELKLQAIMSFHQC 102 (519)
Q Consensus 37 ~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~-~~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~imsfHqC 102 (519)
-+-+.+.+.|..||++||++|-+.-.+-..+. .....| ..+.++++++.|++.|+||..=+-+--|
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~ 95 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHT 95 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 34588899999999999999977654322220 011111 3467899999999999999666666555
Q ss_pred CC
Q 010067 103 GG 104 (519)
Q Consensus 103 GG 104 (519)
+.
T Consensus 96 ~~ 97 (166)
T smart00642 96 SD 97 (166)
T ss_pred CC
Confidence 54
No 62
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=71.31 E-value=3.6 Score=37.68 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=35.8
Q ss_pred HHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEE
Q 010067 46 LKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAI 96 (519)
Q Consensus 46 L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~i 96 (519)
|+.++++|+++|++..++..-... + =...+++.++++++||++..+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-~----~~~~~~~~~~~~~~gl~i~~~ 46 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-K----DDEAEELRRLLEDYGLKIASL 46 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-H----HHHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc-c----hHHHHHHHHHHHHcCCeEEEE
Confidence 688999999999999886544321 0 356889999999999997433
No 63
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=69.86 E-value=11 Score=37.16 Aligned_cols=51 Identities=24% Similarity=0.559 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc--cc--hhHHHHHHHHHHcCCcEEEEEe
Q 010067 41 KLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY--DW--SAYRSLFELIQQYELKLQAIMS 98 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y--dW--s~Y~~l~~mv~~~GLKv~~ims 98 (519)
.++..|+.++++|+++|++ |+. .+..| ++ ..-+++.++++++||++..+..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~----~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~ 68 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGG----RPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTP 68 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccC----CccccccccCchHHHHHHHHHHHcCCeEEEecC
Confidence 4799999999999999998 321 11111 12 2467788999999999844333
No 64
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=69.68 E-value=7.6 Score=39.94 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=41.0
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010067 44 SQLKELKAAGVDGIMVDVWWGIIESKGPRQYD---WSAYRSLFELIQQYELKLQAIMSFHQCGG 104 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~imsfHqCGG 104 (519)
+-+++..++|+++|.+..-|+...--+|..|. +-+++++++-+++ + . +| .|-||+
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~-~--~i--lh~cG~ 232 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-C-P--TI--LHICGN 232 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-C-C--cE--EEECCC
Confidence 45566778999999998889844322577777 9999999999988 2 2 23 588986
No 65
>PHA00442 host recBCD nuclease inhibitor
Probab=69.58 E-value=4.7 Score=32.74 Aligned_cols=27 Identities=37% Similarity=0.745 Sum_probs=22.4
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHc
Q 010067 44 SQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQY 89 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~ 89 (519)
.-|++|++.||| ||++|.+..+|+.+.
T Consensus 30 ~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 30 EFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred HHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 357788888886 899999999998653
No 66
>PRK10658 putative alpha-glucosidase; Provisional
Probab=69.31 E-value=32 Score=39.73 Aligned_cols=87 Identities=11% Similarity=0.229 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcc
Q 010067 38 DKDKLESQLKELKAAG--VDGIMVDVWWGIIESKGPRQYDWS-----AYRSLFELIQQYELKLQAIMSFHQCGGNVGDVV 110 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~G--VdgV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~ 110 (519)
+.+.+.+-++.+++.| ++.|.+|+.|.. ...-+.|.|+ --+++++-+++.|+|+ ++..+ +
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~--~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~--~~~i~---------P 347 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMK--EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKI--CVWIN---------P 347 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhc--CCceeeeEEChhhCCCHHHHHHHHHHCCCEE--EEecc---------C
Confidence 4667777888888766 589999998842 1111244443 4578889999999999 55564 3
Q ss_pred cccCChhhhhhhccCCCeeeecCCCCcc
Q 010067 111 TIPIPKWVLEIGETNPDIFYTNRSGNRN 138 (519)
Q Consensus 111 ~IpLP~WV~~~g~~~PDi~ytD~~G~rn 138 (519)
.|..-.-+-+++.+. +.|.++.+|..-
T Consensus 348 ~i~~~s~~f~e~~~~-gy~vk~~~G~~~ 374 (665)
T PRK10658 348 YIAQKSPLFKEGKEK-GYLLKRPDGSVW 374 (665)
T ss_pred CcCCCchHHHHHHHC-CeEEECCCCCEe
Confidence 343323445555555 789999998754
No 67
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=69.24 E-value=10 Score=41.06 Aligned_cols=79 Identities=19% Similarity=0.343 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeee-----------eeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCC
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWW-----------GIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNV 106 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWW-----------GiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNV 106 (519)
+++.+.+.++++|++|++-+.+|-=| |.-++ .+.+|= +|.+.|++-|++.|||. =|.|=----|.
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~-~~~kFP-~Gl~~l~~~i~~~Gmk~--GlW~ePe~v~~ 131 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEP-DPKKFP-NGLKPLADYIHSLGMKF--GLWFEPEMVSP 131 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECB-BTTTST-THHHHHHHHHHHTT-EE--EEEEETTEEES
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeE-ChhhhC-CcHHHHHHHHHHCCCeE--EEEeccccccc
Confidence 67889999999999999999998766 33443 234442 58999999999999999 44442111122
Q ss_pred CCcccccCChhhhh
Q 010067 107 GDVVTIPIPKWVLE 120 (519)
Q Consensus 107 GD~~~IpLP~WV~~ 120 (519)
+-...---|.|+..
T Consensus 132 ~S~l~~~hPdw~l~ 145 (394)
T PF02065_consen 132 DSDLYREHPDWVLR 145 (394)
T ss_dssp SSCHCCSSBGGBTC
T ss_pred hhHHHHhCccceee
Confidence 22333336777763
No 68
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=68.96 E-value=9.6 Score=43.20 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=39.5
Q ss_pred HHHHHHHH-HHHHHcCcceEEE-eeeeeeeccCCCccccch-----------------hHHHHHHHHHHcCCcEEEEEee
Q 010067 39 KDKLESQL-KELKAAGVDGIMV-DVWWGIIESKGPRQYDWS-----------------AYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 39 ~~~~~~~L-~~LK~~GVdgV~v-dVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKv~~imsf 99 (519)
-+++...| ..||++||+.|.+ +|... |...+|- .+++|++.|++.||+|..=+-+
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEH------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccC------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 36677786 9999999999999 66421 2122222 4899999999999999444444
No 69
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=68.67 E-value=11 Score=38.85 Aligned_cols=95 Identities=19% Similarity=0.128 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChh-
Q 010067 40 DKLESQLKELKAAGVDGIMVDVW-WGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKW- 117 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~W- 117 (519)
+++.+.+++|.++|++.|.+|.= |+.+=...+....-.+.+++.+.+++.+...++ ..|-|.||...+-...-+-|
T Consensus 155 ~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v--~lHiC~G~~~~~~~~~~~y~~ 232 (332)
T cd03311 155 LALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQI--HTHICYGNFRSTWAAEGGYEP 232 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEE--EEEEECCCCcccccccCcHHH
Confidence 36677888999999999999985 765443223345566777778777765655543 56999999643221112223
Q ss_pred hhh-hhccCCCeeeecCCCC
Q 010067 118 VLE-IGETNPDIFYTNRSGN 136 (519)
Q Consensus 118 V~~-~g~~~PDi~ytD~~G~ 136 (519)
+.+ .-+...|.++.|-...
T Consensus 233 i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 233 IAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred HHHHHHhCCCCEEEEEEcCC
Confidence 122 1244567777666543
No 70
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=67.40 E-value=22 Score=38.17 Aligned_cols=109 Identities=17% Similarity=0.287 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCcceEEEeee-eeeeccC---CCccc----cchhHHHHHHHHHHcCCcEEEEEeeeccCC-CCCCccccc
Q 010067 43 ESQLKELKAAGVDGIMVDVW-WGIIESK---GPRQY----DWSAYRSLFELIQQYELKLQAIMSFHQCGG-NVGDVVTIP 113 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVW-WGiVE~~---~p~~Y----dWs~Y~~l~~mv~~~GLKv~~imsfHqCGG-NVGD~~~Ip 113 (519)
+..+..+|++|++.|++++= |.+ +.- .|.-. .+ ..+++++-|++.||+| ++..|.-.| +.+++
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~-~ld~~I~~a~~~gi~V--~iD~H~~~~~~~~~~---- 147 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLK-ILDEAINWAKKLGIYV--LIDLHGYPGGNNGHE---- 147 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHH-HHHHHHHHHHhcCeeE--EEEecccCCCCCCcC----
Confidence 88999999999999999998 554 542 12222 24 8889999999999999 999995443 22221
Q ss_pred CChhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcccceEEEEeeccCCC
Q 010067 114 IPKWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAG 192 (519)
Q Consensus 114 LP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~~~I~eI~VGlGP~G 192 (519)
..|. ++..+. .-+-++.|.+.-+..+.+|+. ..+|..|++===|.|
T Consensus 148 -~s~~------------~~~~~~-----------------~~~~~~~~~~~w~~ia~~f~~---~~~VIg~~~~NEP~~ 193 (407)
T COG2730 148 -HSGY------------TSDYKE-----------------ENENVEATIDIWKFIANRFKN---YDTVIGFELINEPNG 193 (407)
T ss_pred -cccc------------cccccc-----------------cchhHHHHHHHHHHHHHhccC---CCceeeeeeecCCcc
Confidence 1121 222211 114458899999999999998 246666665433444
No 71
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=66.60 E-value=37 Score=33.91 Aligned_cols=63 Identities=29% Similarity=0.387 Sum_probs=43.7
Q ss_pred CccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 010067 18 YVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIM 97 (519)
Q Consensus 18 ~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~im 97 (519)
.+|+.+|.=+..+- ...+++-++.++++|++||.+.-- | + ....++++.++++|++..+.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl--------~--~--ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL--------P--P--EEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC--------C--H--HHHHHHHHHHHHcCCcEEEEe
Confidence 46777774333221 122477799999999999999521 1 1 256789999999999996666
Q ss_pred ee
Q 010067 98 SF 99 (519)
Q Consensus 98 sf 99 (519)
+-
T Consensus 137 ~P 138 (242)
T cd04724 137 AP 138 (242)
T ss_pred CC
Confidence 64
No 72
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=66.53 E-value=78 Score=30.82 Aligned_cols=120 Identities=17% Similarity=0.251 Sum_probs=68.7
Q ss_pred eCCCccc-CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCc
Q 010067 31 TNDNVLE-DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDV 109 (519)
Q Consensus 31 ~~~~~~~-~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~ 109 (519)
..++.+. .++.-.+-|+.+-.+|++.|.|+.+ .+.-.......+++.+-|| |+|+|-..+
T Consensus 65 ~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~~~~~~~i--I~S~H~f~~----- 125 (224)
T PF01487_consen 65 EEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAARKGGTKI--ILSYHDFEK----- 125 (224)
T ss_dssp GGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHHHHTTSEE--EEEEEESS------
T ss_pred ccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHHhhCCCeE--EEEeccCCC-----
Confidence 3445443 3344445667777788998888554 1333444477888899999 999995444
Q ss_pred ccccCChh--hhhhhccCCCeeeecCCCCccccccccccCCccC-CCCCChHHHHHHHHHHHHHHHHhhhcccceEEEEe
Q 010067 110 VTIPIPKW--VLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPL-FDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEV 186 (519)
Q Consensus 110 ~~IpLP~W--V~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pv-l~GRTpi~~Y~dfm~sF~~~f~~~l~~~~I~eI~V 186 (519)
-|.| +.+ .-.+..++|+|-+-+ ...+++-+..+ +..|..++... ..+.=|-+
T Consensus 126 ----tp~~~~l~~----------------~~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~---~~~p~i~~ 180 (224)
T PF01487_consen 126 ----TPSWEELIE----------------LLEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREE---PDIPVIAI 180 (224)
T ss_dssp ------THHHHHH----------------HHHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHH---TSSEEEEE
T ss_pred ----CCCHHHHHH----------------HHHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhc---cCCcEEEE
Confidence 3444 221 122333455555443 34445545544 55556666653 25778889
Q ss_pred eccCCCCC
Q 010067 187 GLGPAGEL 194 (519)
Q Consensus 187 GlGP~GEL 194 (519)
+||+.|.+
T Consensus 181 ~MG~~G~~ 188 (224)
T PF01487_consen 181 SMGELGRI 188 (224)
T ss_dssp EETGGGHH
T ss_pred EcCCCchh
Confidence 99999864
No 73
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=65.76 E-value=6.7 Score=40.31 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQYD---WSAYRSLFELIQQYELKLQAIMSFHQCGG 104 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~imsfHqCGG 104 (519)
.+-++++.++|+++|.+..=|+.-.--+|..|. +-+++++++-+++. .++ .|-||.
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~----~~i--lH~cG~ 241 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL----PTI--LHICGD 241 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC----CcE--EEECCC
Confidence 445666778999999988877642223455555 88999999998875 234 577975
No 74
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=65.23 E-value=12 Score=41.80 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccch-----------------hHHHHHHHHHHcCCcEEEEEeeecc
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWS-----------------AYRSLFELIQQYELKLQAIMSFHQC 102 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKv~~imsfHqC 102 (519)
.++...|..||++||++|.+-= +.| .++.++|. .++++++.+++.||+|..=+-+--|
T Consensus 111 ~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~ 185 (542)
T TIGR02402 111 DAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHF 185 (542)
T ss_pred HHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCC
Confidence 7788899999999999997632 122 24445564 3899999999999999555555334
Q ss_pred C
Q 010067 103 G 103 (519)
Q Consensus 103 G 103 (519)
+
T Consensus 186 ~ 186 (542)
T TIGR02402 186 G 186 (542)
T ss_pred C
Confidence 3
No 75
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=64.56 E-value=12 Score=38.66 Aligned_cols=75 Identities=12% Similarity=0.212 Sum_probs=49.6
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHc--CCcEEEEEeeeccCCCCCCcccccCChhh
Q 010067 44 SQLKELKAAGVDGIMVDVWWGIIESKGPRQYD---WSAYRSLFELIQQY--ELKLQAIMSFHQCGGNVGDVVTIPIPKWV 118 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~--GLKv~~imsfHqCGGNVGD~~~IpLP~WV 118 (519)
.-.+++.++|+++|.+.-=|+.+ =+|.+|+ +-+++++++-+++. |.++ .|-|||+ + ++-.++
T Consensus 181 ~~~~~~ieaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-----lh~cg~~-----~-~~~~~~ 247 (335)
T cd00717 181 EYLKAQIEAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKRIIEEVKKRLPGVPV-----ILFAKGA-----G-GLLEDL 247 (335)
T ss_pred HHHHHHHHhCCCEEEEeCccccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-----EEEcCCC-----H-HHHHHH
Confidence 34455667999999755435543 3577777 99999999999998 4433 5667763 1 455566
Q ss_pred hhhhccCCCeeeecCC
Q 010067 119 LEIGETNPDIFYTNRS 134 (519)
Q Consensus 119 ~~~g~~~PDi~ytD~~ 134 (519)
.+. ..|++-.|..
T Consensus 248 ~~~---~~~~~s~d~~ 260 (335)
T cd00717 248 AQL---GADVVGLDWR 260 (335)
T ss_pred Hhc---CCCEEEeCCC
Confidence 533 3467666654
No 76
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=63.98 E-value=17 Score=35.87 Aligned_cols=53 Identities=26% Similarity=0.296 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccC-CCccccch--hHHHHHHHHHHcCCcEEEE
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESK-GPRQYDWS--AYRSLFELIQQYELKLQAI 96 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~-~p~~YdWs--~Y~~l~~mv~~~GLKv~~i 96 (519)
-.++..++.++++|+++|++.+- +.. .....+|+ .-+++.++++++||+|..+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 35788999999999999999532 211 12234564 3678899999999999644
No 77
>PLN02389 biotin synthase
Probab=63.67 E-value=17 Score=39.11 Aligned_cols=45 Identities=13% Similarity=0.236 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCC-------ccccchhHHHHHHHHHHcCCcE
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGP-------RQYDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLKv 93 (519)
+.+|++||++|++.+.+ .+|. .| ..-+|+.+.+.++.+++.|+++
T Consensus 178 ~E~l~~LkeAGld~~~~-----~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH-----NLDT-SREYYPNVITTRSYDDRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEe-----eecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeE
Confidence 67899999999999988 4563 22 1238999999999999999988
No 78
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=63.64 E-value=8.2 Score=40.45 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=38.3
Q ss_pred HHHHHHHc-CcceEEEeeeeee-----eccCCCccccchhHHHHHHHHHHcC-CcEEEEEeeeccCC
Q 010067 45 QLKELKAA-GVDGIMVDVWWGI-----IESKGPRQYDWSAYRSLFELIQQYE-LKLQAIMSFHQCGG 104 (519)
Q Consensus 45 ~L~~LK~~-GVdgV~vdVWWGi-----VE~~~p~~YdWs~Y~~l~~mv~~~G-LKv~~imsfHqCGG 104 (519)
.+++..++ |+|+|.+--.|+. +.++-=.+|-|-+++++++-+++.| .. ..+|.||-
T Consensus 160 y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~p----iilH~cG~ 222 (321)
T cd03309 160 LYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSAL----IVHHSCGA 222 (321)
T ss_pred HHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCc----eEEEeCCC
Confidence 34444445 9999998666765 4433333444999999999999984 33 34589984
No 79
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=63.25 E-value=63 Score=33.17 Aligned_cols=91 Identities=16% Similarity=0.350 Sum_probs=63.0
Q ss_pred CccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 010067 18 YVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIM 97 (519)
Q Consensus 18 ~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~im 97 (519)
.+|+.+|.=+..|- .-.+++-++.++++||+||-+.-- | +.-..++.+.++++||+...++
T Consensus 91 ~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL--------P----~ee~~~~~~~~~~~gi~~I~lv 151 (263)
T CHL00200 91 KAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL--------P----YEESDYLISVCNLYNIELILLI 151 (263)
T ss_pred CCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC--------C----HHHHHHHHHHHHHcCCCEEEEE
Confidence 45766665444332 235688899999999999998753 1 2447789999999999997766
Q ss_pred eeeccCCCCCCcccccCChhhhhhhccCCC-eeeecCCCCccc
Q 010067 98 SFHQCGGNVGDVVTIPIPKWVLEIGETNPD-IFYTNRSGNRNK 139 (519)
Q Consensus 98 sfHqCGGNVGD~~~IpLP~WV~~~g~~~PD-i~ytD~~G~rn~ 139 (519)
+-+ +.+..+..+.+.-.. |++..+.|..-.
T Consensus 152 ~Pt------------T~~eri~~i~~~a~gFIY~vS~~GvTG~ 182 (263)
T CHL00200 152 APT------------SSKSRIQKIARAAPGCIYLVSTTGVTGL 182 (263)
T ss_pred CCC------------CCHHHHHHHHHhCCCcEEEEcCCCCCCC
Confidence 652 356788776555543 555578777553
No 80
>PRK10785 maltodextrin glucosidase; Provisional
Probab=62.47 E-value=77 Score=36.02 Aligned_cols=155 Identities=21% Similarity=0.233 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc-------------chhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYD-------------WSAYRSLFELIQQYELKLQAIMSFHQCGG 104 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd-------------Ws~Y~~l~~mv~~~GLKv~~imsfHqCGG 104 (519)
+-+.+.+.|..||++||++|-+-= +.|..+--.|+ ...+++|++.|++.|+||..=+-|.-||.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~P---if~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNP---IFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---cccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 348999999999999999998754 23433333343 35789999999999999977777755553
Q ss_pred CCCCcccccCChhhhhhhc-----------cCCCeeeecCCCCcccccccc-ccCCccCCCCCChHHHHHHHHHHH-HHH
Q 010067 105 NVGDVVTIPIPKWVLEIGE-----------TNPDIFYTNRSGNRNKEYLTI-GVDHKPLFDGRTAIEIYSDYMKSF-RKN 171 (519)
Q Consensus 105 NVGD~~~IpLP~WV~~~g~-----------~~PDi~ytD~~G~rn~E~lSl-g~D~~pvl~GRTpi~~Y~dfm~sF-~~~ 171 (519)
+ - .|+..... .+.|-|+-+..|. +.++ +++.+|-|.=.. +..++++..= .+.
T Consensus 254 ----~----~-~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~----~~~w~g~~~lPdLN~~n--p~v~~~l~~~~~~v 318 (598)
T PRK10785 254 ----S----H-PWFDRHNRGTGGACHHPDSPWRDWYSFSDDGR----ALDWLGYASLPKLDFQS--EEVVNEIYRGEDSI 318 (598)
T ss_pred ----C----C-HHHHHhhccccccccCCCCCcceeeEECCCCC----cCCcCCCCcCccccCCC--HHHHHHHHhhhhHH
Confidence 1 1 27654321 1223444344443 2232 467788887666 5667776531 123
Q ss_pred HHhhhcccceEEEEeeccCCCCCCCCCCCCCCCCccCC---Cc--ccccccHHHHHHHHHHHHh
Q 010067 172 MFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGWVFPG---IG--EFQCYDKYLKAEFKEAATA 230 (519)
Q Consensus 172 f~~~l~~~~I~eI~VGlGP~GELRYPSyp~~~gW~~pG---iG--EFQCYDky~~~~f~~~a~~ 230 (519)
+.-+++. . -..+||++=- ++ ...+-+....+.|++.+++
T Consensus 319 ~~~Wl~~-------------------~-~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~ 362 (598)
T PRK10785 319 VRHWLKA-------------------P-YNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKE 362 (598)
T ss_pred HHHhhcC-------------------C-CCCcEEEEecHhHhccccCccccHHHHHHHHHHHHh
Confidence 3334421 0 0257888722 21 2233345566778888875
No 81
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=61.96 E-value=78 Score=33.31 Aligned_cols=93 Identities=15% Similarity=0.231 Sum_probs=56.4
Q ss_pred cccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccc-----hhH--HHHHHHHHHcCCcEEEEEeeeccCCC
Q 010067 35 VLEDKDKLESQLKELKAAG--VDGIMVDVWWGIIESKGPRQYDW-----SAY--RSLFELIQQYELKLQAIMSFHQCGGN 105 (519)
Q Consensus 35 ~~~~~~~~~~~L~~LK~~G--VdgV~vdVWWGiVE~~~p~~YdW-----s~Y--~~l~~mv~~~GLKv~~imsfHqCGGN 105 (519)
.....+++++-++.+++.| +|+|.+|+=|.. .-+.|+| .-- +++++-+++.|+|+ ++..|-.=.
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~--~~~i~P~v~- 91 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHY--VPILDPAIS- 91 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEE--EEEEeCccc-
Confidence 3456788898999998766 588888865531 2234543 345 88999999999999 555541111
Q ss_pred CCCcccccCChhhhhhhccCCCeeeecCCCCcc
Q 010067 106 VGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRN 138 (519)
Q Consensus 106 VGD~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn 138 (519)
+.. ..-.-+. .+++.+. +.|.++.+|...
T Consensus 92 ~~~-~~~~~~~--~~e~~~~-g~~v~~~~g~~~ 120 (339)
T cd06602 92 ANE-PTGSYPP--YDRGLEM-DVFIKNDDGSPY 120 (339)
T ss_pred cCc-CCCCCHH--HHHHHHC-CeEEECCCCCEE
Confidence 100 0000122 2344433 788888888654
No 82
>PRK12313 glycogen branching enzyme; Provisional
Probab=61.45 E-value=14 Score=41.83 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=38.9
Q ss_pred HHHHHHHH-HHHHHcCcceEEE-eeeeeeeccCCCccccch-----------------hHHHHHHHHHHcCCcEEEEEee
Q 010067 39 KDKLESQL-KELKAAGVDGIMV-DVWWGIIESKGPRQYDWS-----------------AYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 39 ~~~~~~~L-~~LK~~GVdgV~v-dVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKv~~imsf 99 (519)
-+.+...| ..||++||+.|.+ +|+ | .|...+|- .+++|++.|++.||||..=+-+
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 36677774 9999999999985 332 2 12223343 4899999999999999444444
No 83
>PRK09989 hypothetical protein; Provisional
Probab=60.95 E-value=21 Score=35.25 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEE
Q 010067 41 KLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQ 94 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 94 (519)
-++..|++++++|.++|++.. +..++ -+++.++++++||++.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~---------~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF---------PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC---------cccCC---HHHHHHHHHHcCCcEE
Confidence 468899999999999999932 12233 3678888999999983
No 84
>PLN02808 alpha-galactosidase
Probab=60.73 E-value=16 Score=39.71 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=45.4
Q ss_pred CHHHHHHHHHH-----HHHcCcceEEEeeeeeeeccCCCccccc------hhHHHHHHHHHHcCCcEE
Q 010067 38 DKDKLESQLKE-----LKAAGVDGIMVDVWWGIIESKGPRQYDW------SAYRSLFELIQQYELKLQ 94 (519)
Q Consensus 38 ~~~~~~~~L~~-----LK~~GVdgV~vdVWWGiVE~~~p~~YdW------s~Y~~l~~mv~~~GLKv~ 94 (519)
+++.+.+...+ ||++|.+-|.||-=|-..++.+.|+.-. ++.+.|++.|++.|||.=
T Consensus 47 ~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfG 114 (386)
T PLN02808 47 NETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLG 114 (386)
T ss_pred CHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceE
Confidence 67888888887 6999999999998887665544443222 689999999999999983
No 85
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=60.47 E-value=69 Score=32.59 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhhhh
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIG 122 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g 122 (519)
..+|+.....||+.|.+-+ ...+++...+.++.+++.|++|.+-+.. ..-.-|..+.+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~----------a~~~~~~~~~~~~ 144 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF----------HKHEFDEALPLIKAIKEKGYEVFFNLMA----------ISGYSDEELLELL 144 (266)
T ss_pred HHHHHHHhcCCcCEEEEec----------ccccHHHHHHHHHHHHHCCCeEEEEEEe----------ecCCCHHHHHHHH
Confidence 4578888899999999865 1237888999999999999999766555 1112466666632
Q ss_pred ----ccCCC-eeeecCCCCcc
Q 010067 123 ----ETNPD-IFYTNRSGNRN 138 (519)
Q Consensus 123 ----~~~PD-i~ytD~~G~rn 138 (519)
+.-+| |.+.|-.|.-+
T Consensus 145 ~~~~~~g~~~i~l~DT~G~~~ 165 (266)
T cd07944 145 ELVNEIKPDVFYIVDSFGSMY 165 (266)
T ss_pred HHHHhCCCCEEEEecCCCCCC
Confidence 23344 67788888644
No 86
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=60.29 E-value=65 Score=32.01 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCcceEEE-eeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 42 LESQLKELKAAGVDGIMV-DVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 42 ~~~~L~~LK~~GVdgV~v-dVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
....+++++++||..+.+ .+.. ..++.+.+++++++.+|.+.+.+|
T Consensus 16 ~~~~~~~~~~~g~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 16 RPEVLERAREAGVSAIIIVSTDP-------------EDWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp HHHHHHHHHHTTEEEEEEEESSH-------------HHHHHHHHHHHHTTTEEEEEE---
T ss_pred HHHHHHHHHHcCCCEEEEcCCCH-------------HHhHHHHHHHhcCCCeEEEEecCC
Confidence 567889999999988842 2222 455588999999999999999999
No 87
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=60.16 E-value=16 Score=38.14 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcC--CcEEEEEeeeccCCCCCCcccccCChh
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQYD---WSAYRSLFELIQQYE--LKLQAIMSFHQCGGNVGDVVTIPIPKW 117 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~G--LKv~~imsfHqCGGNVGD~~~IpLP~W 117 (519)
..-++++.++|+++|.+.-=|+-+ =+|.+|+ +-+.+++++-+++.| .+ |+ |-|||.. ++-.+
T Consensus 189 ~~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~---il--h~cg~~~------~~~~~ 255 (346)
T PRK00115 189 IAYLNAQIEAGAQAVQIFDSWAGA--LSPADYREFVLPYMKRIVAELKREHPDVP---VI--LFGKGAG------ELLEA 255 (346)
T ss_pred HHHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCC---EE--EEcCCcH------HHHHH
Confidence 345566777999999754435543 4577777 999999999999984 33 33 6788631 12234
Q ss_pred hhhhhccCCCeeeecCC
Q 010067 118 VLEIGETNPDIFYTNRS 134 (519)
Q Consensus 118 V~~~g~~~PDi~ytD~~ 134 (519)
+. +...|++-.|..
T Consensus 256 ~~---~~~~~~is~d~~ 269 (346)
T PRK00115 256 MA---ETGADVVGLDWT 269 (346)
T ss_pred HH---hcCCCEEeeCCC
Confidence 54 334466666653
No 88
>PRK04302 triosephosphate isomerase; Provisional
Probab=59.73 E-value=21 Score=35.05 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
+..++.||++|+++|.++- ++++-.+.--.++++.+++.||.+ |++.|
T Consensus 75 ~~~~~~l~~~G~~~vii~~--------ser~~~~~e~~~~v~~a~~~Gl~~--I~~v~ 122 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINH--------SERRLTLADIEAVVERAKKLGLES--VVCVN 122 (223)
T ss_pred hhHHHHHHHcCCCEEEEec--------cccccCHHHHHHHHHHHHHCCCeE--EEEcC
Confidence 4568999999999998863 344455556788999999999988 66664
No 89
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=58.22 E-value=9.8 Score=27.16 Aligned_cols=18 Identities=50% Similarity=0.761 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCcceEEEe
Q 010067 43 ESQLKELKAAGVDGIMVD 60 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vd 60 (519)
.+..++|-.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 445688889999999987
No 90
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=57.19 E-value=54 Score=34.67 Aligned_cols=92 Identities=11% Similarity=0.174 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhhhh
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIG 122 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g 122 (519)
..+|+...+.||+.|.|-.-.... .--++.++.+|+.|+++++.+.. ..-.-|.-+.+..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~----------d~~~~~i~~ak~~G~~v~~~l~~----------s~~~~~e~l~~~a 149 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA----------DVSEQHIGMARELGMDTVGFLMM----------SHMTPPEKLAEQA 149 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH----------HHHHHHHHHHHHcCCeEEEEEEc----------ccCCCHHHHHHHH
Confidence 457999999999999987743322 23689999999999999765543 1122455555432
Q ss_pred ----ccCCC-eeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHH
Q 010067 123 ----ETNPD-IFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMF 173 (519)
Q Consensus 123 ----~~~PD-i~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~ 173 (519)
+.-+| |.++|-.|.- +| +...++.+.+++++.
T Consensus 150 ~~~~~~Ga~~i~i~DT~G~~------------------~P-~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 150 KLMESYGADCVYIVDSAGAM------------------LP-DDVRDRVRALKAVLK 186 (333)
T ss_pred HHHHhcCCCEEEEccCCCCC------------------CH-HHHHHHHHHHHHhCC
Confidence 22344 6677777752 55 555677777776643
No 91
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=56.90 E-value=1.1e+02 Score=31.95 Aligned_cols=86 Identities=20% Similarity=0.367 Sum_probs=56.7
Q ss_pred cccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 010067 35 VLEDKDKLESQLKELKAAG--VDGIMVDVWWGIIESKGPRQYDWS-----AYRSLFELIQQYELKLQAIMSFHQCGGNVG 107 (519)
Q Consensus 35 ~~~~~~~~~~~L~~LK~~G--VdgV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~imsfHqCGGNVG 107 (519)
..++.+.+.+-.+.+++.| +|+|.+|.=|.. +-+.|+|. --+++++-.++.|+|+ ++..|
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~--~~~~~------- 85 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKV--VTIID------- 85 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEE--EEEEe-------
Confidence 3456788888999999877 588888866541 23335444 3579999999999999 55554
Q ss_pred CcccccC-C-hhhhhhhccCCCeeeecCCCC
Q 010067 108 DVVTIPI-P-KWVLEIGETNPDIFYTNRSGN 136 (519)
Q Consensus 108 D~~~IpL-P-~WV~~~g~~~PDi~ytD~~G~ 136 (519)
|.|.. | .-+-+++.+. +.|.++.+|.
T Consensus 86 --P~v~~~~~~~~~~e~~~~-g~~v~~~~g~ 113 (339)
T cd06604 86 --PGVKVDPGYDVYEEGLEN-DYFVKDPDGE 113 (339)
T ss_pred --CceeCCCCChHHHHHHHC-CeEEECCCCC
Confidence 33322 1 1233444444 7899998885
No 92
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=56.47 E-value=7.5 Score=38.26 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEE
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAI 96 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~i 96 (519)
..+.+...++|+|+|.+=++|+.+.+ +...+...--.++.+.|+++|||+..-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~-~~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS-GNEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT-THHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecccccccc-ccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 56888899999999999999999886 567777778888889999999999444
No 93
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=56.00 E-value=17 Score=37.28 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCc---cccchhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPR---QYDWSAYRSLFELIQQYELKLQAIMSFHQCGG 104 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~---~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGG 104 (519)
..-++++.++|+|+|.+.-=++ .--+|. +|-+-+++++++.+++.|.+ ..-+|-||-
T Consensus 185 ~~~~~~~~~~G~d~i~~~d~~~--~~isp~~f~e~~~P~~k~i~~~i~~~g~~---~~~lH~cG~ 244 (343)
T PF01208_consen 185 IEYAKAQIEAGADGIFIFDSSG--SLISPEMFEEFILPYLKKIIDAIKEAGKD---PVILHICGN 244 (343)
T ss_dssp HHHHHHHHHTT-SEEEEEETTG--GGS-HHHHHHHTHHHHHHHHHHHHHHETE----EEEEETTH
T ss_pred HHHHHHHHHhCCCccccccccc--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEEECCc
Confidence 3456677899999997766322 222344 67799999999999999993 235788974
No 94
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=55.40 E-value=49 Score=34.00 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=51.9
Q ss_pred ccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcc---ccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 26 PLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQ---YDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 26 PLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~---YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
++-+|.-=+.+++++++..--++||++|+..+....|= =+.+|.. +-.++++.+.+.+++.||.+ +-.+|
T Consensus 27 ~~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~k---pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~--~te~~ 99 (266)
T PRK13398 27 EKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFK---PRTSPYSFQGLGEEGLKILKEVGDKYNLPV--VTEVM 99 (266)
T ss_pred CEEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeec---CCCCCCccCCcHHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 45555556788899999999999999999988888662 1111211 12668999999999999998 55554
No 95
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=55.06 E-value=1.9e+02 Score=29.82 Aligned_cols=125 Identities=12% Similarity=0.205 Sum_probs=80.0
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeee----eee--------ecc-------CCCccccchhHHHHHHHHHHcCCcE
Q 010067 33 DNVLEDKDKLESQLKELKAAGVDGIMVDVW----WGI--------IES-------KGPRQYDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 33 ~~~~~~~~~~~~~L~~LK~~GVdgV~vdVW----WGi--------VE~-------~~p~~YdWs~Y~~l~~mv~~~GLKv 93 (519)
...+-..+.|++.+..|...+.+...+-.= |-+ .+. ...+.|.=+-.+++++.|++.|+.|
T Consensus 9 aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~v 88 (303)
T cd02742 9 SRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEV 88 (303)
T ss_pred cccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEE
Confidence 346778899999999999999988765433 432 121 1245788899999999999999999
Q ss_pred EEEEeeeccCCCCCCcccccCChhhhhhhccCCCeee-----------------ecCC-------------CCccccccc
Q 010067 94 QAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFY-----------------TNRS-------------GNRNKEYLT 143 (519)
Q Consensus 94 ~~imsfHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~y-----------------tD~~-------------G~rn~E~lS 143 (519)
+|-+-+ |.=.....+.+|++.- ++.. ......++-
T Consensus 89 iPEiD~---------------PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iH 153 (303)
T cd02742 89 IPEIDM---------------PGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLH 153 (303)
T ss_pred EEeccc---------------hHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEE
Confidence 765543 2211111112222111 0000 000267899
Q ss_pred cccCCccCCCCCChHHHHHHHHHHHHHHHHh
Q 010067 144 IGVDHKPLFDGRTAIEIYSDYMKSFRKNMFD 174 (519)
Q Consensus 144 lg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~ 174 (519)
+|.||++.. .++-+.|..|++...+..++
T Consensus 154 iGgDE~~~~--~~~~~l~~~f~~~~~~~v~~ 182 (303)
T cd02742 154 IGGDEAHFK--QDRKHLMSQFIQRVLDIVKK 182 (303)
T ss_pred ecceecCCC--CCHHHHHHHHHHHHHHHHHH
Confidence 999998755 45668888888877777665
No 96
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=54.84 E-value=22 Score=36.82 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=48.1
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHc--CCcEEEEEeeeccCCCCCCcccccCChhh
Q 010067 44 SQLKELKAAGVDGIMVDVWWGIIESKGPRQYD---WSAYRSLFELIQQY--ELKLQAIMSFHQCGGNVGDVVTIPIPKWV 118 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~--GLKv~~imsfHqCGGNVGD~~~IpLP~WV 118 (519)
+-++++.++|+++|.+.-=|+.+ =+|.+|+ +-+++++++-+++. +.. | .|-|||. -++-.++
T Consensus 184 ~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~p~~k~i~~~i~~~~~~~~---i--lh~cg~~------~~~~~~~ 250 (338)
T TIGR01464 184 EYLVEQVKAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKKIIEEVKARLPNVP---V--ILFAKGA------GHLLEEL 250 (338)
T ss_pred HHHHHHHHcCCCEEEEECCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCC---E--EEEeCCc------HHHHHHH
Confidence 34455667999998864435533 4577777 99999999999987 433 3 4557753 1344455
Q ss_pred hhhhccCCCeeeecCC
Q 010067 119 LEIGETNPDIFYTNRS 134 (519)
Q Consensus 119 ~~~g~~~PDi~ytD~~ 134 (519)
.+ ...|++-.|..
T Consensus 251 ~~---~~~~~~s~d~~ 263 (338)
T TIGR01464 251 AE---TGADVVGLDWT 263 (338)
T ss_pred Hh---cCCCEEEeCCC
Confidence 53 34567766654
No 97
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=54.82 E-value=18 Score=36.99 Aligned_cols=173 Identities=20% Similarity=0.341 Sum_probs=100.8
Q ss_pred CCccEEEeecc---ceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 010067 17 NYVPIYVMLPL---GVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 17 ~~vpv~VMlPL---d~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 93 (519)
..+|||+|.== |-|-+.. .-+.++.+.+..|++|++||.+.+- ..+|+.|=.-.++|.+.+. ||.|
T Consensus 50 ~~ipv~~MIRPRgGdFvY~~~---E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--gL~v 118 (241)
T COG3142 50 SKIPVYVMIRPRGGDFVYSDD---ELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--GLGV 118 (241)
T ss_pred cCCceEEEEecCCCCcccChH---HHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--CCce
Confidence 67899999632 2222222 2378999999999999999998764 5689999999999998877 6666
Q ss_pred EEEEeeeccCCCCCCcccccCCh--hhhhhhccCCCeeeecCCCCcc---------ccccccccCCccCC--CCCChHHH
Q 010067 94 QAIMSFHQCGGNVGDVVTIPIPK--WVLEIGETNPDIFYTNRSGNRN---------KEYLTIGVDHKPLF--DGRTAIEI 160 (519)
Q Consensus 94 ~~imsfHqCGGNVGD~~~IpLP~--WV~~~g~~~PDi~ytD~~G~rn---------~E~lSlg~D~~pvl--~GRTpi~~ 160 (519)
--=+.|-.|- =|... |+.+.|-.. ..| +|.+. ++.+..+-+..-++ .|-+
T Consensus 119 TFHrAFD~~~--------d~~~ale~li~~Gv~R---ILT--sGg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~---- 181 (241)
T COG3142 119 TFHRAFDECP--------DPLEALEQLIELGVER---ILT--SGGKASALEGLDLLKRLIEQAKGRIIIMAGAGVR---- 181 (241)
T ss_pred eeehhhhhcC--------CHHHHHHHHHHCCCcE---Eec--CCCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCC----
Confidence 4466774443 13332 666543221 222 34332 22222222222222 3333
Q ss_pred HHHHHHHHHHHHHhhhcccceEEEEeeccCCCCCCCCCCCCCCC-CccCCCccc-ccccHHHHHHHHHHHH
Q 010067 161 YSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQG-WVFPGIGEF-QCYDKYLKAEFKEAAT 229 (519)
Q Consensus 161 Y~dfm~sF~~~f~~~l~~~~I~eI~VGlGP~GELRYPSyp~~~g-W~~pGiGEF-QCYDky~~~~f~~~a~ 229 (519)
.+|++.|...--|+|+-.+.+- ++||-.--...+ =.+- +++ +|=|.-+.+.++..++
T Consensus 182 --------~~N~~~l~~~tg~~e~H~s~~~--~~~~~~~~~~m~~~~~~--~~~~~~td~~~v~~~~~~l~ 240 (241)
T COG3142 182 --------AENIAELVLLTGVTEVHGSAGV--EMRYRNPGSSMGADDFA--DEYIYDTDGAAVAEMKAILE 240 (241)
T ss_pred --------HHHHHHHHHhcCchhhhhcccc--cccccCccCcccccccc--ccccccCcHHHHHHHHHHhc
Confidence 2445555433336666666554 778754432222 2221 222 7888888888877654
No 98
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=54.68 E-value=1.8e+02 Score=30.19 Aligned_cols=87 Identities=15% Similarity=0.308 Sum_probs=56.6
Q ss_pred cCHHHHHHHHHHHHHc--CcceEEEee-eeeeeccCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 010067 37 EDKDKLESQLKELKAA--GVDGIMVDV-WWGIIESKGPRQYDWS-----AYRSLFELIQQYELKLQAIMSFHQCGGNVGD 108 (519)
Q Consensus 37 ~~~~~~~~~L~~LK~~--GVdgV~vdV-WWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD 108 (519)
.+.+.++.-++.+++. -+|.|.+|. ||+ ..+-+.|+|+ --+++++-+++.|+|| |+..|-. |.
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv--~~~i~P~---v~- 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAEL--MISIWPT---FG- 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEE--EEEecCC---cC-
Confidence 5778889899999887 679999996 453 1121256555 5788999999999999 4455411 11
Q ss_pred cccccCChhhhhhhccCCCeeeecCCCCcc
Q 010067 109 VVTIPIPKWVLEIGETNPDIFYTNRSGNRN 138 (519)
Q Consensus 109 ~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn 138 (519)
..-+. -+++++. +.+.++..|...
T Consensus 92 ---~~~~~--y~e~~~~-g~~v~~~~g~~~ 115 (319)
T cd06591 92 ---PETEN--YKEMDEK-GYLIKTDRGPRV 115 (319)
T ss_pred ---CCChh--HHHHHHC-CEEEEcCCCCee
Confidence 11122 2344443 789998887754
No 99
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=53.81 E-value=24 Score=43.16 Aligned_cols=61 Identities=18% Similarity=0.345 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCcceEEEe-ee-eeeec-cC----------CCccccch-------------------------hHH
Q 010067 39 KDKLESQLKELKAAGVDGIMVD-VW-WGIIE-SK----------GPRQYDWS-------------------------AYR 80 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GVdgV~vd-VW-WGiVE-~~----------~p~~YdWs-------------------------~Y~ 80 (519)
-.++...|..||++||+.|.+- |+ .+.+. .. +...|+|- .++
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK 558 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFK 558 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHH
Confidence 3678888999999999999753 33 32221 00 12345554 388
Q ss_pred HHHHHHHHcCCcEEEEEee
Q 010067 81 SLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 81 ~l~~mv~~~GLKv~~imsf 99 (519)
++++.++++||+|..=+-|
T Consensus 559 ~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 559 NLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHCCCEEEEeccc
Confidence 9999999999999544444
No 100
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.32 E-value=1.6e+02 Score=30.47 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=50.9
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEE---eee--eeeeccCC-CccccchhHHHHHHHHHHcCCcEEEEEe
Q 010067 34 NVLEDKDKLESQLKELKAAGVDGIMV---DVW--WGIIESKG-PRQYDWSAYRSLFELIQQYELKLQAIMS 98 (519)
Q Consensus 34 ~~~~~~~~~~~~L~~LK~~GVdgV~v---dVW--WGiVE~~~-p~~YdWs~Y~~l~~mv~~~GLKv~~ims 98 (519)
|.+-..+.+++.++.|...|.+.+++ |-+ -|.-|-.. .+.|.=+-++++.+.|++.|+.|+|-+-
T Consensus 11 ~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid 81 (301)
T cd06565 11 NAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQ 81 (301)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCC
Confidence 36667899999999999999999976 333 34333322 6788888999999999999999977543
No 101
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=52.97 E-value=1.4e+02 Score=31.04 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=80.4
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEE---eeeeeee-c-------------------------cCCCccccchhHHHHH
Q 010067 33 DNVLEDKDKLESQLKELKAAGVDGIMV---DVWWGII-E-------------------------SKGPRQYDWSAYRSLF 83 (519)
Q Consensus 33 ~~~~~~~~~~~~~L~~LK~~GVdgV~v---dVWWGiV-E-------------------------~~~p~~YdWs~Y~~l~ 83 (519)
...+-..+.|++.+..|...+.+.+++ |=| .+- + ....+.|.=+-+++++
T Consensus 10 aR~~~~~~~ik~~id~ma~~K~N~lhlHltD~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv 88 (326)
T cd06564 10 GRKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNL-IFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELI 88 (326)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCceEEEeecCCc-ccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHH
Confidence 445667899999999999999999885 423 221 1 1135678888999999
Q ss_pred HHHHHcCCcEEEEEee-------------eccCCC----CCCcccccCCh---hhhhhhccCCCeeeecCCCCccccccc
Q 010067 84 ELIQQYELKLQAIMSF-------------HQCGGN----VGDVVTIPIPK---WVLEIGETNPDIFYTNRSGNRNKEYLT 143 (519)
Q Consensus 84 ~mv~~~GLKv~~imsf-------------HqCGGN----VGD~~~IpLP~---WV~~~g~~~PDi~ytD~~G~rn~E~lS 143 (519)
+.|++.|+.|+|-+-+ ..|.+. .-+.-++.-|. .+.+.-+.-=++| .+ -..|+-
T Consensus 89 ~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f-~~-----~~~~~H 162 (326)
T cd06564 89 AYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGF-NP-----KSDTVH 162 (326)
T ss_pred HHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhc-CC-----CCCEEE
Confidence 9999999999654422 112110 00011111121 1111000000111 10 147999
Q ss_pred cccCCccCCCCCChHHHHHHHHHHHHHHHHh
Q 010067 144 IGVDHKPLFDGRTAIEIYSDYMKSFRKNMFD 174 (519)
Q Consensus 144 lg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~ 174 (519)
+|.||.+-. .+..+.|.+|++...+.+.+
T Consensus 163 iGgDE~~~~--~~~~~~~~~f~~~~~~~v~~ 191 (326)
T cd06564 163 IGADEYAGD--AGYAEAFRAYVNDLAKYVKD 191 (326)
T ss_pred ecccccccc--CccHHHHHHHHHHHHHHHHH
Confidence 999998865 45558888888888877776
No 102
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=52.62 E-value=28 Score=34.32 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 010067 41 KLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 93 (519)
.++..|++++++|.+||++. + +.. ...+++.++++++||++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~---~------~~~---~~~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFM---F------PYD---YDIEELKQVLASNKLEH 56 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEc---C------CCC---CCHHHHHHHHHHcCCcE
Confidence 47889999999999999992 2 111 24788889999999998
No 103
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=52.32 E-value=1.8e+02 Score=32.84 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=45.6
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccC-CCcccc-------------chhHHHHHHHHHHcCCcEEEEEeeec
Q 010067 36 LEDKDKLESQLKELKAAGVDGIMVDVWWGIIESK-GPRQYD-------------WSAYRSLFELIQQYELKLQAIMSFHQ 101 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~-~p~~Yd-------------Ws~Y~~l~~mv~~~GLKv~~imsfHq 101 (519)
.-+-+.+.+.|..||++||++|-+.=-+ +.. ....|+ .+.+++|++.++++|+||..=+-+--
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~---~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH 105 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFY---VSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNH 105 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCC---CCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 3466888999999999999999764432 111 112232 24589999999999999966666644
Q ss_pred cC
Q 010067 102 CG 103 (519)
Q Consensus 102 CG 103 (519)
|+
T Consensus 106 ~s 107 (551)
T PRK10933 106 TS 107 (551)
T ss_pred cc
Confidence 43
No 104
>PRK07360 FO synthase subunit 2; Reviewed
Probab=51.96 E-value=13 Score=39.50 Aligned_cols=52 Identities=23% Similarity=0.354 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeec---------cCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIE---------SKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE---------~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
+.+|++||+||++.+. +.-. .-.|++-.+..+.+.++.+++.||++-.-|=|
T Consensus 163 ~e~l~~LkeAGld~~~-----~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 163 EEVLKALKDAGLDSMP-----GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred HHHHHHHHHcCCCcCC-----CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 6789999999999994 2111 11477778888899999999999999444433
No 105
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=51.00 E-value=44 Score=37.41 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=48.0
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc-------------cchhHHHHHHHHHHcCCcEEEEEeeecc
Q 010067 36 LEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY-------------DWSAYRSLFELIQQYELKLQAIMSFHQC 102 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~imsfHqC 102 (519)
.-+-+.+...|..||++||++|-+.--.-.-+ ....| ....+++|++.|++.|+||..=+-+.-|
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~ 100 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ--KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHT 100 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCC--CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 34668899999999999999997754432111 11234 2456899999999999999777777656
Q ss_pred C
Q 010067 103 G 103 (519)
Q Consensus 103 G 103 (519)
+
T Consensus 101 ~ 101 (543)
T TIGR02403 101 S 101 (543)
T ss_pred c
Confidence 5
No 106
>PLN02877 alpha-amylase/limit dextrinase
Probab=50.76 E-value=27 Score=42.14 Aligned_cols=53 Identities=21% Similarity=0.607 Sum_probs=39.1
Q ss_pred HHHHHHHHcCcceEEE-eee-eeee-ccC-----------------------------CCccccchh-------------
Q 010067 44 SQLKELKAAGVDGIMV-DVW-WGII-ESK-----------------------------GPRQYDWSA------------- 78 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~v-dVW-WGiV-E~~-----------------------------~p~~YdWs~------------- 78 (519)
.-|+.||++||..|.+ +|+ .+-| |.. ....|+|-|
T Consensus 377 ~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYa 456 (970)
T PLN02877 377 LHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYA 456 (970)
T ss_pred HHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCcccc
Confidence 4689999999999986 666 5444 211 023488876
Q ss_pred -----------HHHHHHHHHHcCCcEEEEEe
Q 010067 79 -----------YRSLFELIQQYELKLQAIMS 98 (519)
Q Consensus 79 -----------Y~~l~~mv~~~GLKv~~ims 98 (519)
++++++-++++||+| ||-
T Consensus 457 tdP~g~~RI~efk~mV~~lH~~GI~V--ImD 485 (970)
T PLN02877 457 SNPDGPCRIIEFRKMVQALNRIGLRV--VLD 485 (970)
T ss_pred cCCCCcchHHHHHHHHHHHHHCCCEE--EEE
Confidence 899999999999999 554
No 107
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=50.66 E-value=24 Score=41.34 Aligned_cols=82 Identities=27% Similarity=0.404 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchhH----HHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccC
Q 010067 40 DKLESQLKELKAAGVDGIMVDVW-WGIIESKGPRQYDWSAY----RSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPI 114 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVW-WGiVE~~~p~~YdWs~Y----~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpL 114 (519)
.+++..++.|.++|+..|-+|.= | .|.-....-+|..| -+.+..+-+ |++-...+++|-|=||..+ | +
T Consensus 581 ~al~~Ev~~L~~aG~~~IQiDEPal--~e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~---i-~ 653 (758)
T PRK05222 581 LAIRDEVLDLEAAGIKIIQIDEPAL--REGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFND---I-I 653 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCchh--hhcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHH---H-H
Confidence 47778889999999999999987 6 34323344567444 555565555 6654446799999999765 1 3
Q ss_pred ChhhhhhhccCCCeeeec
Q 010067 115 PKWVLEIGETNPDIFYTN 132 (519)
Q Consensus 115 P~WV~~~g~~~PDi~ytD 132 (519)
|. +.+.+-|.++.+
T Consensus 654 ~~----i~~l~vD~~~lE 667 (758)
T PRK05222 654 DA----IAALDADVISIE 667 (758)
T ss_pred HH----HHhCCCCEEEEE
Confidence 33 235677877766
No 108
>PLN02692 alpha-galactosidase
Probab=50.45 E-value=28 Score=38.19 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=41.8
Q ss_pred CHHHHHHHHHH-----HHHcCcceEEEeeeeeeeccCCCccccc------hhHHHHHHHHHHcCCcE
Q 010067 38 DKDKLESQLKE-----LKAAGVDGIMVDVWWGIIESKGPRQYDW------SAYRSLFELIQQYELKL 93 (519)
Q Consensus 38 ~~~~~~~~L~~-----LK~~GVdgV~vdVWWGiVE~~~p~~YdW------s~Y~~l~~mv~~~GLKv 93 (519)
+++.+.+...+ ||++|.+-|.+|.=|-..++...|+.-. +|.+.|++.|++.|||.
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKf 137 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKL 137 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCce
Confidence 66777776665 4888999999998664434433333333 68999999999999998
No 109
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=50.45 E-value=11 Score=36.66 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=38.3
Q ss_pred cEEE-eeccceeeC----------CCcccC-HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHH
Q 010067 20 PIYV-MLPLGVITN----------DNVLED-KDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQ 87 (519)
Q Consensus 20 pv~V-MlPLd~v~~----------~~~~~~-~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~ 87 (519)
|+-| .||+..|+. +.++++ .+.++++|.+||+.||..|-+ .+|..+=..|... .|.+.++
T Consensus 26 P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~ 97 (168)
T PF05706_consen 26 PIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQ 97 (168)
T ss_dssp ----EEEE-GGGT-SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHH
T ss_pred ceeeeeecccccCCcceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHH
Confidence 5544 678777643 223332 468899999999999999865 6776555556554 5668999
Q ss_pred HcCCcE
Q 010067 88 QYELKL 93 (519)
Q Consensus 88 ~~GLKv 93 (519)
++|+++
T Consensus 98 ~~Gi~~ 103 (168)
T PF05706_consen 98 ARGIAW 103 (168)
T ss_dssp HTT-EE
T ss_pred HcCCEE
Confidence 999988
No 110
>PLN02591 tryptophan synthase
Probab=50.23 E-value=80 Score=32.27 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=60.3
Q ss_pred CccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 010067 18 YVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIM 97 (519)
Q Consensus 18 ~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~im 97 (519)
.+|+.+|.=...|- .-.+++=++.+|++||+||-++= .-+..-.++.+.++++||......
T Consensus 78 ~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~GviipD------------LP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 78 SCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVPD------------LPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred CCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeCC------------CCHHHHHHHHHHHHHcCCeEEEEe
Confidence 45666665444332 23668889999999999999972 124667789999999999995544
Q ss_pred eeeccCCCCCCcccccCChhhhhhhccCCCeee-ecCCCCc
Q 010067 98 SFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFY-TNRSGNR 137 (519)
Q Consensus 98 sfHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~y-tD~~G~r 137 (519)
+- + +-+..+..+.+.-++..| ..+.|..
T Consensus 139 ~P-----------t-t~~~ri~~ia~~~~gFIY~Vs~~GvT 167 (250)
T PLN02591 139 TP-----------T-TPTERMKAIAEASEGFVYLVSSTGVT 167 (250)
T ss_pred CC-----------C-CCHHHHHHHHHhCCCcEEEeeCCCCc
Confidence 33 2 245688887776666444 3555543
No 111
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.89 E-value=77 Score=32.87 Aligned_cols=86 Identities=12% Similarity=0.193 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCc--ceEEEeeeeeeeccCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc
Q 010067 39 KDKLESQLKELKAAGV--DGIMVDVWWGIIESKGPRQYDWS-----AYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVT 111 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GV--dgV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~ 111 (519)
.+.+..-++.+++.|+ |.|.+|.=|-.-+...-+.|+|. --+++++-+++.|+|+ +++.|-+=.. |
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~--~~~i~P~i~~--~--- 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRL--APNIKPGLLQ--D--- 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEE--EEEeCCcccC--C---
Confidence 6678888899998774 78888743322222112345554 3678899999999999 5566533211 1
Q ss_pred ccCChhhhhhhccCCCeeeecCCCC
Q 010067 112 IPIPKWVLEIGETNPDIFYTNRSGN 136 (519)
Q Consensus 112 IpLP~WV~~~g~~~PDi~ytD~~G~ 136 (519)
=| .-+++++. +.|.++.+|.
T Consensus 101 --~~--~y~e~~~~-g~~v~~~~g~ 120 (317)
T cd06599 101 --HP--RYKELKEA-GAFIKPPDGR 120 (317)
T ss_pred --CH--HHHHHHHC-CcEEEcCCCC
Confidence 12 23444444 7888888775
No 112
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=49.84 E-value=38 Score=37.02 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc---c-------------------chhHHHHHHHHHHcCCcEEEE
Q 010067 39 KDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY---D-------------------WSAYRSLFELIQQYELKLQAI 96 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y---d-------------------Ws~Y~~l~~mv~~~GLKv~~i 96 (519)
.+.|...|..||++||++|-+.--+--........| | ..-+++|++.|++.|+||.+=
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 367889999999999999977654322211011222 2 234889999999999999888
Q ss_pred EeeeccCC
Q 010067 97 MSFHQCGG 104 (519)
Q Consensus 97 msfHqCGG 104 (519)
+-|=-|++
T Consensus 101 ~V~NH~~~ 108 (479)
T PRK09441 101 VVLNHKAG 108 (479)
T ss_pred ECcccccC
Confidence 88866765
No 113
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=49.79 E-value=1.4e+02 Score=30.72 Aligned_cols=90 Identities=24% Similarity=0.309 Sum_probs=60.8
Q ss_pred CCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 010067 16 PNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQA 95 (519)
Q Consensus 16 ~~~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 95 (519)
...+|+.+|.=...|- ...+++=++.++++||+||-++= =| +....++.+.++++||+++.
T Consensus 85 ~~~~pivlm~Y~N~i~-------~~G~e~F~~~~~~aGvdGlIipD--------LP----~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 85 EPDIPIVLMTYYNPIF-------QYGIERFFKEAKEAGVDGLIIPD--------LP----PEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp CTSSEEEEEE-HHHHH-------HH-HHHHHHHHHHHTEEEEEETT--------SB----GGGHHHHHHHHHHTT-EEEE
T ss_pred CCCCCEEEEeeccHHh-------ccchHHHHHHHHHcCCCEEEEcC--------CC----hHHHHHHHHHHHHcCCeEEE
Confidence 3567888887665542 23467779999999999998852 22 35668899999999999966
Q ss_pred EEeeeccCCCCCCcccccCChhhhhhhccCCCeee-ecCCCC
Q 010067 96 IMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFY-TNRSGN 136 (519)
Q Consensus 96 imsfHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~y-tD~~G~ 136 (519)
..+=. ..+..+..+.+.-+...| ....|.
T Consensus 146 lv~p~------------t~~~Ri~~i~~~a~gFiY~vs~~Gv 175 (259)
T PF00290_consen 146 LVAPT------------TPEERIKKIAKQASGFIYLVSRMGV 175 (259)
T ss_dssp EEETT------------S-HHHHHHHHHH-SSEEEEESSSSS
T ss_pred EECCC------------CCHHHHHHHHHhCCcEEEeeccCCC
Confidence 65541 357788887766556444 577775
No 114
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=49.39 E-value=3.1e+02 Score=28.88 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=27.3
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeee
Q 010067 35 VLEDKDKLESQLKELKAAGVDGIMVDVWWG 64 (519)
Q Consensus 35 ~~~~~~~~~~~L~~LK~~GVdgV~vdVWWG 64 (519)
.+.+++.+++|.+..|++||+|-.+.--|-
T Consensus 53 dl~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf 82 (345)
T PF14307_consen 53 DLRDPEVMEKQAELAKEYGIDGFCFYHYWF 82 (345)
T ss_pred cCCCHHHHHHHHHHHHHhCCCEEEEEeeec
Confidence 467899999999999999999999988786
No 115
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=48.79 E-value=44 Score=32.92 Aligned_cols=110 Identities=17% Similarity=0.252 Sum_probs=65.1
Q ss_pred HHHHH-HHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhhhhc
Q 010067 45 QLKEL-KAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGE 123 (519)
Q Consensus 45 ~L~~L-K~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g~ 123 (519)
-|+.+ ...|+|.|.|+..+.. ...+++++.+++.|-|| |+|+|.=.+ +-+.+.|+. .
T Consensus 83 ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kv--I~S~H~f~~------tp~~~~l~~-~-- 140 (228)
T TIGR01093 83 ELKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGTKI--IMSYHDFQK------TPSWEEIVE-R-- 140 (228)
T ss_pred HHHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCCEE--EEeccCCCC------CCCHHHHHH-H--
Confidence 35555 6789999999987641 24678888889999888 999994322 111222321 1
Q ss_pred cCCCeeeecCCCCccccccccccCCccC-CCCCChHHHHHHHHHHHHHHHHhhhcccceEEEEeeccCCCCCC
Q 010067 124 TNPDIFYTNRSGNRNKEYLTIGVDHKPL-FDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELR 195 (519)
Q Consensus 124 ~~PDi~ytD~~G~rn~E~lSlg~D~~pv-l~GRTpi~~Y~dfm~sF~~~f~~~l~~~~I~eI~VGlGP~GELR 195 (519)
-.+..++|+|-+-+ ..-+++-+.. .. .+|..++... ..+.=|.++||+.|-+-
T Consensus 141 --------------~~~~~~~gaDivKia~~a~~~~D~~-~l-l~~~~~~~~~---~~~p~i~~~MG~~G~~S 194 (228)
T TIGR01093 141 --------------LEKALSYGADIVKIAVMANSKEDVL-TL-LEITNKVDEH---ADVPLITMSMGDRGKIS 194 (228)
T ss_pred --------------HHHHHHhCCCEEEEEeccCCHHHHH-HH-HHHHHHHHhc---CCCCEEEEeCCCCChhH
Confidence 12334566776654 2334442322 22 2455555442 13455789999998653
No 116
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=48.23 E-value=51 Score=36.72 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=48.0
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC-Ccccc-------------chhHHHHHHHHHHcCCcEEEEEeeec
Q 010067 36 LEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKG-PRQYD-------------WSAYRSLFELIQQYELKLQAIMSFHQ 101 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~-p~~Yd-------------Ws~Y~~l~~mv~~~GLKv~~imsfHq 101 (519)
.-+-+.|.+.|..||++||++|-+-=. .|..+ ...|+ ...+++|++.|++.|+||..=+-+.-
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi---~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPF---FQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCC---cCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 456689999999999999999976543 23211 22332 35789999999999999977677765
Q ss_pred cCC
Q 010067 102 CGG 104 (519)
Q Consensus 102 CGG 104 (519)
++.
T Consensus 101 ~s~ 103 (539)
T TIGR02456 101 TSD 103 (539)
T ss_pred CCC
Confidence 543
No 117
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=48.14 E-value=61 Score=34.76 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=48.5
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 34 NVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 34 ~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
|.++.++++...-+.||++||..+.-..|==..-+.+-+-..+.+|+.+.+.+++.||.+ +-+.|
T Consensus 126 c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~--~t~v~ 190 (360)
T PRK12595 126 CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAV--ISEIV 190 (360)
T ss_pred ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 677889999999999999999999866653111112233445789999999999999998 44444
No 118
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=47.64 E-value=50 Score=34.35 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeecc----CCCccccchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIES----KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCG 103 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCG 103 (519)
+-+..++-..-..+.|++.|.||..|.--+. .--..+.+....+|++.+++.|.+| +|-.|.-+
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi--~lw~~~~~ 97 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGI--WLWYHSET 97 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EE--EEEEECCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCE--EEEEeCCc
Confidence 4456666777788999999999999975332 1124677899999999999999999 66666433
No 119
>PRK10150 beta-D-glucuronidase; Provisional
Probab=47.44 E-value=3.2e+02 Score=30.82 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=35.5
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 010067 37 EDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQA 95 (519)
Q Consensus 37 ~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 95 (519)
-+.+++.++|+.||++|++.|++- ...+ -.++.++|-+.||-|..
T Consensus 310 ~~~~~~~~d~~l~K~~G~N~vR~s---h~p~-----------~~~~~~~cD~~GllV~~ 354 (604)
T PRK10150 310 LDEVLNVHDHNLMKWIGANSFRTS---HYPY-----------SEEMLDLADRHGIVVID 354 (604)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEec---cCCC-----------CHHHHHHHHhcCcEEEE
Confidence 466788999999999999999982 1111 24789999999998854
No 120
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=47.33 E-value=54 Score=33.24 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=46.6
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeecc-CCC--ccccchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010067 36 LEDKDKLESQLKELKAAGVDGIMVDVWWGIIES-KGP--RQYDWSAYRSLFELIQQYELKLQAIMSFHQCG 103 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~-~~p--~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCG 103 (519)
+..++++++.++.+++.|++.|-+-.=++..-+ ..+ ..++-...+++++.+++.|+++ ..|.++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v----~~H~~~ 182 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYV----AAHAYG 182 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEE----EEEeCC
Confidence 566888999999999999999977653322111 111 2567788999999999999876 567543
No 121
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=47.26 E-value=24 Score=37.97 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe---ee-eeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 010067 38 DKDKLESQLKELKAAGVDGIMVD---VW-WGIIESKGPRQYDWSAYRSLFELIQQYELKLQA 95 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vd---VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 95 (519)
+.-.+...+++++++|++||++. +| |+..+.+. + .-.+++-++++++||+|..
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~----~-~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER----D-QIVRRFKKALDETGLKVPM 86 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH----H-HHHHHHHHHHHHhCCeEEE
Confidence 33456778999999999999864 22 43332110 1 2267899999999999943
No 122
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=46.87 E-value=63 Score=31.80 Aligned_cols=82 Identities=17% Similarity=0.107 Sum_probs=58.0
Q ss_pred HHHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeeeccccccCChhHHHHHHHHhCCCCCCC
Q 010067 333 RPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNK 412 (519)
Q Consensus 333 ~~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~g~~~ 412 (519)
..+.+.++++|..+.+.+++..|-... ...+|+..+++|++.++.-.|-|.=.+.. ...++..+|+...+.+
T Consensus 142 ~~~~~~l~~~Gy~~v~w~v~~~Dw~~~--~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~lk~~---- 213 (224)
T TIGR02884 142 ERTLAYTKELGYYTVFWSLAFKDWKVD--EQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDLKEQ---- 213 (224)
T ss_pred HHHHHHHHHcCCcEEeccccCcccCCC--CCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHHHHC----
Confidence 347888999999999999988776421 22467889999988776555666544321 2356889999887654
Q ss_pred CCCCCCCcceeEEeccccc
Q 010067 413 EGPPKLRMYGVTYLRLSDD 431 (519)
Q Consensus 413 ~g~~~~~~~~FTylRm~~~ 431 (519)
||+|.++++.
T Consensus 214 ---------Gy~fvtl~el 223 (224)
T TIGR02884 214 ---------GYTFKSLDDL 223 (224)
T ss_pred ---------CCEEEEhHHc
Confidence 4778777653
No 123
>PRK04326 methionine synthase; Provisional
Probab=46.60 E-value=36 Score=35.04 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhh
Q 010067 40 DKLESQLKELKAAGVDGIMVDVW-WGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWV 118 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV 118 (519)
+.+...+++|+++|++.|.+|.= |.. .+. ++..+.+.++.+-+ +++.. ...|-|.||..+ .|
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~----~~~--~~~~~~~~l~~~~~-~~~~~--v~lH~C~G~~~~-------~~- 223 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALAT----HPE--DVEIAVEALNRIVK-GINAK--LGLHVCYGDYSR-------IA- 223 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhc----CHH--HHHHHHHHHHHHHh-CCCCE--EEEEEeCCCcHH-------HH-
Confidence 46677888999999999999974 554 222 23444444444433 44543 356999887521 11
Q ss_pred hhhhccCCCeeeecCC
Q 010067 119 LEIGETNPDIFYTNRS 134 (519)
Q Consensus 119 ~~~g~~~PDi~ytD~~ 134 (519)
....+..-|.+..|-.
T Consensus 224 ~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 224 PYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHhCCCCEEEEEeC
Confidence 1122455566666554
No 124
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=45.27 E-value=2.4e+02 Score=28.56 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccC---
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPI--- 114 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpL--- 114 (519)
+++.+.+-|++|.++|...|-+|+-- .|+ +.++=...+.+++.++++|=++ +++.+.-...-+.....++
T Consensus 62 ~R~~~A~ll~~L~~~ga~~I~~Di~f--~~~---~~~~~~~D~~la~al~~~~~~v--vl~~~~~~~~~~~~~~~~~~~~ 134 (310)
T PF05226_consen 62 PRSVYARLLDRLAAAGAKAIGFDILF--DEP---DPSNPEGDQALAEALRRAGNRV--VLASVFSPEEDGARPEEPPLPL 134 (310)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEeee--cCC---CCCCchHHHHHHHHHHhCCCeE--EEEEecccccccccccCccccc
Confidence 67889999999999999999999954 443 1111127788899999998777 5664432222222122222
Q ss_pred Chhhh---hhhccCCCeeeecCCCCccccccc
Q 010067 115 PKWVL---EIGETNPDIFYTNRSGNRNKEYLT 143 (519)
Q Consensus 115 P~WV~---~~g~~~PDi~ytD~~G~rn~E~lS 143 (519)
|.=.. ..|-. -+..|.+|....-.+.
T Consensus 135 p~l~~~~~~~G~v---n~~~D~DG~vRr~~l~ 163 (310)
T PF05226_consen 135 PPLASAAAGLGFV---NVSPDSDGVVRRFPLL 163 (310)
T ss_pred hhhhhcccceeeE---EeeECCCCcEeeeecc
Confidence 22111 11222 2456888887766663
No 125
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=45.19 E-value=19 Score=37.33 Aligned_cols=53 Identities=28% Similarity=0.370 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeecc--------CCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIES--------KGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~--------~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
+..|++||++|++.+.. +-+|. -.|++..+..|.+.++.++++|+++.+-|-+
T Consensus 143 ~e~l~~Lk~aG~~~~~~----~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ii 203 (340)
T TIGR03699 143 REVLERLKEAGLDSIPG----GGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMF 203 (340)
T ss_pred HHHHHHHHHcCCCcCCC----CcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEe
Confidence 78999999999996631 12232 1266778999999999999999998543333
No 126
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=45.11 E-value=49 Score=32.32 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGD 108 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD 108 (519)
+...+..+++.+.++|+++|.+-+.++..+ ..+......++.++++++|+++ |+-.|.=|-.+|+
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~--iie~~~~g~~~~~ 138 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPL--IAWMYPRGPAVKN 138 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCE--EEEEeccCCcccC
Confidence 445666778999999999998888877443 3566778888999999999998 5544543433443
No 127
>PRK06256 biotin synthase; Validated
Probab=44.90 E-value=27 Score=36.07 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCc-------cccchhHHHHHHHHHHcCCcEE
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPR-------QYDWSAYRSLFELIQQYELKLQ 94 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~-------~YdWs~Y~~l~~mv~~~GLKv~ 94 (519)
+..+++||++|++.|.+. +|. .+. ..+|..+.+.++.++++|+++.
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~ 204 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPC 204 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeec
Confidence 567889999999999774 353 322 2467888899999999999874
No 128
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=44.81 E-value=18 Score=37.75 Aligned_cols=57 Identities=18% Similarity=0.291 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCcceEEE---eee-eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 43 ESQLKELKAAGVDGIMV---DVW-WGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~v---dVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
+..|++||+||++.+.. +.. -.+...-.|++..+..+.+.+++++++||++-..|=+
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~ 201 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY 201 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEE
Confidence 67899999999998851 111 1111122455566777799999999999999555444
No 129
>PRK09875 putative hydrolase; Provisional
Probab=44.33 E-value=81 Score=32.89 Aligned_cols=68 Identities=12% Similarity=0.255 Sum_probs=46.2
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccc
Q 010067 33 DNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTI 112 (519)
Q Consensus 33 ~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~I 112 (519)
+..+.+.+.....|+.+|++|+..| ||+= +.+-|+ .-..+.++.++.|+.| |+|| |- -...
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~T-----~~g~GR----d~~~l~~is~~tgv~I--v~~T----G~---y~~~ 87 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNV-IEMT-----NRYMGR----NAQFMLDVMRETGINV--VACT----GY---YQDA 87 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeE-EecC-----CCccCc----CHHHHHHHHHHhCCcE--EEcC----cC---CCCc
Confidence 4467788999999999999999877 4432 111222 3467888999999888 7776 11 1222
Q ss_pred cCChhhh
Q 010067 113 PIPKWVL 119 (519)
Q Consensus 113 pLP~WV~ 119 (519)
-.|.|+.
T Consensus 88 ~~p~~~~ 94 (292)
T PRK09875 88 FFPEHVA 94 (292)
T ss_pred cCCHHHh
Confidence 3677775
No 130
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.24 E-value=60 Score=32.97 Aligned_cols=87 Identities=21% Similarity=0.309 Sum_probs=53.8
Q ss_pred ccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 010067 26 PLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGN 105 (519)
Q Consensus 26 PLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGN 105 (519)
|+...+-.|.+ -.-.+++-++.++++||+||-+.. |+ ...-.++++.++++||+...+++-
T Consensus 89 plv~m~Y~Npi-~~~G~e~f~~~~~~aGvdgviipD-----lp-------~ee~~~~~~~~~~~gl~~i~lv~P------ 149 (256)
T TIGR00262 89 PIGLLTYYNLI-FRKGVEEFYAKCKEVGVDGVLVAD-----LP-------LEESGDLVEAAKKHGVKPIFLVAP------ 149 (256)
T ss_pred CEEEEEeccHH-hhhhHHHHHHHHHHcCCCEEEECC-----CC-------hHHHHHHHHHHHHCCCcEEEEECC------
Confidence 44433433433 134668889999999999999873 22 245678999999999999555544
Q ss_pred CCCcccccCChhhhhhhccCC-CeeeecCCCCc
Q 010067 106 VGDVVTIPIPKWVLEIGETNP-DIFYTNRSGNR 137 (519)
Q Consensus 106 VGD~~~IpLP~WV~~~g~~~P-Di~ytD~~G~r 137 (519)
+ +.+.-+..+.+.-. =|++....|..
T Consensus 150 -----~-T~~eri~~i~~~~~gfiy~vs~~G~T 176 (256)
T TIGR00262 150 -----N-ADDERLKQIAEKSQGFVYLVSRAGVT 176 (256)
T ss_pred -----C-CCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 2 22345544444433 25555555553
No 131
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=44.01 E-value=45 Score=33.74 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=33.9
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 36 LEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
-.+.++++++|+.||++|++.|++- ...+ -.++.++|.+.||-|..=+..
T Consensus 32 a~~~~~~~~d~~l~k~~G~N~iR~~---h~p~-----------~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 32 AMPDEAMERDLELMKEMGFNAIRTH---HYPP-----------SPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp ---HHHHHHHHHHHHHTT-SEEEET---TS-------------SHHHHHHHHHHT-EEEEE-S-
T ss_pred cCCHHHHHHHHHHHHhcCcceEEcc---cccC-----------cHHHHHHHhhcCCEEEEeccc
Confidence 3477899999999999999999982 1122 257889999999999655544
No 132
>PLN00196 alpha-amylase; Provisional
Probab=43.75 E-value=66 Score=35.25 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc------c--------hhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010067 39 KDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYD------W--------SAYRSLFELIQQYELKLQAIMSFHQCGG 104 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd------W--------s~Y~~l~~mv~~~GLKv~~imsfHqCGG 104 (519)
-+.+...|..||++||+.|-+.-= .|+.++..|+ - ..+++|++.+++.|+||.+=+-|--|++
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~---~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~ 119 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPP---SHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTA 119 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC---CCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCccc
Confidence 467899999999999999988742 2433333342 2 2589999999999999976666655554
No 133
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=43.25 E-value=57 Score=34.85 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 010067 41 KLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQA 95 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 95 (519)
.+.-..+.++++|.|+|.+-|+|+-=+...-++-......++.+-|++.||-+..
T Consensus 107 ~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 107 LDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred cccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 3444578899999999999999993222111567788899999999999999843
No 134
>PRK08508 biotin synthase; Provisional
Probab=43.19 E-value=30 Score=35.30 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCc-------cccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPR-------QYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~-------~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
+.+|++||++|++.+.++ +|. ++. --+|.-..+.++.+++.|+++-.-|=+
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~ 159 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LET-SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF 159 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE
Confidence 779999999999999985 554 332 246777777888999999988443333
No 135
>PRK03906 mannonate dehydratase; Provisional
Probab=42.55 E-value=36 Score=36.89 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=38.0
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 45 QLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 45 ~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
.|+.+|++||+||.... -.-.....++-....++-++|+++||+|-||=|.
T Consensus 15 ~l~~~rQ~G~~~iv~~l----~~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~ 65 (385)
T PRK03906 15 TLEDIRQPGATGIVTAL----HDIPVGEVWPVEEILARKAEIEAAGLEWSVVESV 65 (385)
T ss_pred hHHHHhcCCCCceeecC----CCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 57889999999999763 1111223455667888899999999999887665
No 136
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=41.93 E-value=56 Score=33.49 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQA 95 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 95 (519)
..+++-|+..|++|++.|++.. +--...=.-..++++++++.|||+.+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~--------G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISD--------GSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcC--------CccCCCHHHHHHHHHHHHhCCCeEec
Confidence 4567777788888888877642 22233445566788888888888743
No 137
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=41.86 E-value=2e+02 Score=27.35 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 42 LESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 42 ~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
.+..|+.|+++||+.+.+--.+ +..++.+.+++++. .++.+.+++|
T Consensus 17 ~~~~l~~~~~~gv~~~v~~~~~------------~~~~~~~~~la~~~-~~i~~~~G~h 62 (251)
T cd01310 17 RDDVLARAREAGVIKIIVVGTD------------LKSSKRALELAKKY-DNVYAAVGLH 62 (251)
T ss_pred HHHHHHHHHHcCCCEEEEeCCC------------HHHHHHHHHHHHhC-CCeEEEEeeC
Confidence 4778899999999988765321 12356677778888 7777777887
No 138
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=41.80 E-value=46 Score=39.24 Aligned_cols=83 Identities=19% Similarity=0.289 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchhHHHHH----HHHHHcCCcEEEEEeeeccCCCCCCcccccC
Q 010067 40 DKLESQLKELKAAGVDGIMVDVW-WGIIESKGPRQYDWSAYRSLF----ELIQQYELKLQAIMSFHQCGGNVGDVVTIPI 114 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVW-WGiVE~~~p~~YdWs~Y~~l~----~mv~~~GLKv~~imsfHqCGGNVGD~~~IpL 114 (519)
.+++..++.|.++|+..|-+|.= |. |...-..-+|..|.+.+ +++ ..|++-..-+++|-|-||..+ | +
T Consensus 586 ~alr~Ev~~L~~aG~~~IQIDEPal~--e~~~~~~~~~~~~l~~av~af~~~-~~~v~~~~~I~~H~C~gnf~~---I-~ 658 (766)
T PLN02475 586 LAIKDEVEDLEKAGITVIQIDEAALR--EGLPLRKSEHAFYLDWAVHSFRIT-NCGVQDTTQIHTHMCYSNFND---I-I 658 (766)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcchh--hcCCcCccCHHHHHHHHHHHHHHH-HhcCCCCCEEEEEEecCCcHH---H-H
Confidence 36777888999999999999986 63 33222346676665444 443 335543445788999999654 1 2
Q ss_pred ChhhhhhhccCCCeeeecC
Q 010067 115 PKWVLEIGETNPDIFYTNR 133 (519)
Q Consensus 115 P~WV~~~g~~~PDi~ytD~ 133 (519)
| .+.+.+-|.++.|-
T Consensus 659 ~----~i~~l~~D~~~~E~ 673 (766)
T PLN02475 659 H----SIIDMDADVITIEN 673 (766)
T ss_pred H----HHHhCCCCEEEEEc
Confidence 2 23356777777653
No 139
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=41.62 E-value=56 Score=33.66 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcc------ccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccccc
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQ------YDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIP 113 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~------YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~Ip 113 (519)
+++.+++++|..+|+.-|-+|.= .+.+.-.... .+|.-..+.+..+- .+... .+++|-|+||..+..
T Consensus 154 ~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~v~~H~C~~~~~~~~--- 226 (324)
T PF01717_consen 154 EAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAAEALNRAV-KGEDA--TVGVHVCRGNYPSIL--- 226 (324)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHHHHHHHTT-STTTS--EEEEEESSSCHCTTH---
T ss_pred HHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHHHHHHhcc-CCCCC--EEEEEecCccchhhH---
Confidence 47788899999999999999976 2222211111 12322222222221 24444 679999999853321
Q ss_pred CChhhhhhhccCCCeeeecCCCCc
Q 010067 114 IPKWVLEIGETNPDIFYTNRSGNR 137 (519)
Q Consensus 114 LP~WV~~~g~~~PDi~ytD~~G~r 137 (519)
....+.+-|.++-+-+..+
T Consensus 227 -----~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 -----PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp -----HHHHCSS-SEEEEEETSST
T ss_pred -----HHHhhcccceEEeecccCC
Confidence 2234567787766555544
No 140
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=41.32 E-value=71 Score=31.45 Aligned_cols=56 Identities=18% Similarity=0.397 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
+.+++.+.+++||+ ++|.|-+-.=||.=....| ...-+++++.+-+.|..+ |++-|
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~~~~~~~A~~l~~~G~Dv--IiG~H 213 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEP----TDEQRELAHALIDAGADV--VIGHH 213 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCC----CHHHHHHHHHHHHcCCCE--EEcCC
Confidence 36789999999998 7999999999997332223 223356666666789887 99988
No 141
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=41.21 E-value=44 Score=36.53 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=37.4
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 45 QLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 45 ~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
.|+.+|++||+||....- +-.....++-....++-++|+++||+|-||=|.
T Consensus 15 ~l~~irQ~G~~giV~al~----~~p~gevW~~~~i~~~k~~ie~~GL~~~vvEs~ 65 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALH----HIPNGEVWEKEEIRKRKEYIESAGLHWSVVESV 65 (394)
T ss_pred hHHHHhhcCCcceeecCC----CCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 578889999999996542 111122445556788889999999999888666
No 142
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=41.11 E-value=2.4e+02 Score=29.31 Aligned_cols=83 Identities=19% Similarity=0.375 Sum_probs=54.6
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 010067 36 LEDKDKLESQLKELKAAG--VDGIMVDVWWGIIESKGPRQYDWS-----AYRSLFELIQQYELKLQAIMSFHQCGGNVGD 108 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~G--VdgV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD 108 (519)
-.+.+.++.-++.+++.+ +|.|.+|+=|. . +-+.|+|+ --+++++-+++.|+|+.+++ |
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~--~-------- 85 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM--D--SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIV--D-------- 85 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhhh--C--CCCceeechhcCCCHHHHHHHHHHCCCEEEEEe--e--------
Confidence 456788888899998866 58888986552 1 23455554 46789999999999995444 3
Q ss_pred cccccC----ChhhhhhhccCCCeeeecCCCC
Q 010067 109 VVTIPI----PKWVLEIGETNPDIFYTNRSGN 136 (519)
Q Consensus 109 ~~~IpL----P~WV~~~g~~~PDi~ytD~~G~ 136 (519)
+.|.. |.+ +++.+ .+.|.++.+|.
T Consensus 86 -P~i~~~~~~~~~--~~~~~-~~~~v~~~~g~ 113 (317)
T cd06600 86 -PGIRVDQNYSPF--LSGMD-KGKFCEIESGE 113 (317)
T ss_pred -ccccCCCCChHH--HHHHH-CCEEEECCCCC
Confidence 33322 233 22332 37888888875
No 143
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=40.68 E-value=1.2e+02 Score=33.31 Aligned_cols=74 Identities=19% Similarity=0.477 Sum_probs=41.3
Q ss_pred CCCccccc---hhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhhhhccCCCeeeecCCCCccccccccc
Q 010067 69 KGPRQYDW---SAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETNPDIFYTNRSGNRNKEYLTIG 145 (519)
Q Consensus 69 ~~p~~YdW---s~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg 145 (519)
..++.||| .+-+-+++.|++.|.+. ++.| .+ ++|.|+..-|... .+.....+|.
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~--f~aF----------SN-SPP~~MT~NG~~~--------g~~~~~~NLk-- 149 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNI--FEAF----------SN-SPPWWMTKNGSAS--------GGDDGSDNLK-- 149 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT-----EEEE-----------S-SS-GGGSSSSSSB---------S-SSS-SS---
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCe--EEEe----------ec-CCCHHHhcCCCCC--------CCCccccccC--
Confidence 46899999 56777899999999998 7788 33 5899987444321 1111144444
Q ss_pred cCCccCCCCCChHHHHHHHHHHHHHHHHh
Q 010067 146 VDHKPLFDGRTAIEIYSDYMKSFRKNMFD 174 (519)
Q Consensus 146 ~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~ 174 (519)
-| . .+.|.+||....++|..
T Consensus 150 ~d-------~--y~~FA~YLa~Vv~~~~~ 169 (384)
T PF14587_consen 150 PD-------N--YDAFADYLADVVKHYKK 169 (384)
T ss_dssp TT----------HHHHHHHHHHHHHHHHC
T ss_pred hh-------H--HHHHHHHHHHHHHHHHh
Confidence 11 1 37777777777777743
No 144
>PRK09936 hypothetical protein; Provisional
Probab=40.31 E-value=56 Score=34.56 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeee--eeeeccCCCccccch----hHHHHHHHHHHcCCcEEEEEee
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVW--WGIIESKGPRQYDWS----AYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVW--WGiVE~~~p~~YdWs----~Y~~l~~mv~~~GLKv~~imsf 99 (519)
.+++|+.-++++|..|++-+.|- | ||.- ||. +..++++.+++.||||++=|-+
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQ-Wt~yG~~--------~fg~~~g~La~~l~~A~~~Gl~v~vGL~~ 94 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQ-WTRYGDA--------DFGGQRGWLAKRLAAAQQAGLKLVVGLYA 94 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE-eeeccCC--------CcccchHHHHHHHHHHHHcCCEEEEcccC
Confidence 57899999999999999999875 3 3321 443 5778999999999999554444
No 145
>PRK14706 glycogen branching enzyme; Provisional
Probab=40.15 E-value=58 Score=37.54 Aligned_cols=55 Identities=15% Similarity=0.343 Sum_probs=39.4
Q ss_pred CHHHHHHHH-HHHHHcCcceEEEeeeeeeeccCCCccccchh-----------------HHHHHHHHHHcCCcEEEEEee
Q 010067 38 DKDKLESQL-KELKAAGVDGIMVDVWWGIIESKGPRQYDWSA-----------------YRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 38 ~~~~~~~~L-~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~-----------------Y~~l~~mv~~~GLKv~~imsf 99 (519)
.-+++...| ..||++||+.|.+=- +.|- |...+|-+ ++++++.++++||+| ||-+
T Consensus 165 ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~V--ilD~ 237 (639)
T PRK14706 165 NYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGV--ILDW 237 (639)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEE--EEEe
Confidence 445677776 689999999988632 3452 34445544 789999999999999 5443
No 146
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=40.09 E-value=1.2e+02 Score=30.36 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=59.0
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhhhh-
Q 010067 44 SQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIG- 122 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g- 122 (519)
.++++.++.|++.|.+-+-...+ .-..++++.+++.|+++++.++- + ..+ -|..+.+..
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~----------~~~~~~i~~ak~~G~~v~~~~~~--~-------~~~-~~~~~~~~~~ 148 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA----------DVSEQHIGAARKLGMDVVGFLMM--S-------HMA-SPEELAEQAK 148 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH----------HHHHHHHHHHHHCCCeEEEEEEe--c-------cCC-CHHHHHHHHH
Confidence 57888889999999886644322 35788999999999999777743 1 112 356665532
Q ss_pred ---ccCCC-eeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHH
Q 010067 123 ---ETNPD-IFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMF 173 (519)
Q Consensus 123 ---~~~PD-i~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~ 173 (519)
+..+| |.+.|-.|.- +| +...++.+.+++++.
T Consensus 149 ~~~~~G~d~i~l~DT~G~~------------------~P-~~v~~lv~~l~~~~~ 184 (263)
T cd07943 149 LMESYGADCVYVTDSAGAM------------------LP-DDVRERVRALREALD 184 (263)
T ss_pred HHHHcCCCEEEEcCCCCCc------------------CH-HHHHHHHHHHHHhCC
Confidence 22334 5566766642 56 455667777776543
No 147
>PRK07094 biotin synthase; Provisional
Probab=39.97 E-value=40 Score=34.55 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCcceEEEeee---eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 43 ESQLKELKAAGVDGIMVDVW---WGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVW---WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
+..|+.||++|++.|.+.+= -.+.+.-.+ ...++.+.+.++.++++|+++..-+-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~ii 187 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMV 187 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEE
Confidence 56889999999999987541 111111123 578899999999999999987443333
No 148
>PLN02433 uroporphyrinogen decarboxylase
Probab=39.88 E-value=45 Score=34.87 Aligned_cols=77 Identities=9% Similarity=0.113 Sum_probs=49.0
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhh
Q 010067 44 SQLKELKAAGVDGIMVDVWWGIIESKGPRQYD---WSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLE 120 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~ 120 (519)
.-+++..++|++.|.+.-=|+-+ -+|.+|+ |-+.+++++-+++.+-.+ -...|.||.. ++-.++.
T Consensus 183 ~~~~~~ieaGa~~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~--~~ilh~cG~~-------~~~~~~~- 250 (345)
T PLN02433 183 EYVDYQIDAGAQVVQIFDSWAGH--LSPVDFEEFSKPYLEKIVDEVKARHPDV--PLILYANGSG-------GLLERLA- 250 (345)
T ss_pred HHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEeCCCH-------HHHHHHH-
Confidence 34455667999999766556643 3577777 999999999999863222 2345888852 2333444
Q ss_pred hhccCCCeeeecCC
Q 010067 121 IGETNPDIFYTNRS 134 (519)
Q Consensus 121 ~g~~~PDi~ytD~~ 134 (519)
+...|++-.|..
T Consensus 251 --~~~~~~i~~d~~ 262 (345)
T PLN02433 251 --GTGVDVIGLDWT 262 (345)
T ss_pred --hcCCCEEEcCCC
Confidence 334456665554
No 149
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=39.49 E-value=72 Score=33.77 Aligned_cols=90 Identities=14% Similarity=0.202 Sum_probs=59.8
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhhhh-
Q 010067 44 SQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIG- 122 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g- 122 (519)
.+|+...+.||+.|.|-.-+... ..-.+.++.+|+.|+++++.++. ..-.-|..+.+..
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~----------~~~~~~i~~ak~~G~~v~~~l~~----------a~~~~~e~l~~~a~ 151 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA----------DVSEQHIGLARELGMDTVGFLMM----------SHMAPPEKLAEQAK 151 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH----------HHHHHHHHHHHHCCCeEEEEEEe----------ccCCCHHHHHHHHH
Confidence 57899999999999988743332 23589999999999999776664 1223456665532
Q ss_pred ---ccCCC-eeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHH
Q 010067 123 ---ETNPD-IFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNM 172 (519)
Q Consensus 123 ---~~~PD-i~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f 172 (519)
+.-+| |.++|-.|.- +| +.-.++.+.+++++
T Consensus 152 ~~~~~Ga~~i~i~DT~G~~------------------~P-~~v~~~v~~l~~~l 186 (337)
T PRK08195 152 LMESYGAQCVYVVDSAGAL------------------LP-EDVRDRVRALRAAL 186 (337)
T ss_pred HHHhCCCCEEEeCCCCCCC------------------CH-HHHHHHHHHHHHhc
Confidence 22344 5667877752 56 34455666666554
No 150
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=39.30 E-value=31 Score=35.46 Aligned_cols=56 Identities=20% Similarity=0.301 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCcceEE-Ee--ee-eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 010067 42 LESQLKELKAAGVDGIM-VD--VW-WGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIM 97 (519)
Q Consensus 42 ~~~~L~~LK~~GVdgV~-vd--VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~im 97 (519)
.+..|++||++|++.+. +. .. -.+...-.|++..+..+.+.++.+++.|+++-.-|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeE
Confidence 36789999999999774 11 01 11111223778899999999999999999984433
No 151
>PRK00957 methionine synthase; Provisional
Probab=37.82 E-value=1.1e+02 Score=31.38 Aligned_cols=80 Identities=24% Similarity=0.346 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhh
Q 010067 40 DKLESQLKELKAAGVDGIMVDVW-WGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWV 118 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV 118 (519)
+.+...+++|+++|++.|.+|.= |+. +..+.+...+.++.+.+ ++++ ....|-||+ . -|.|
T Consensus 144 ~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~--~v~lH~CG~-~-------~~i~- 205 (305)
T PRK00957 144 RALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNV--PVAMHVCGD-V-------SNII- 205 (305)
T ss_pred HHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCC--ceEEEECCC-c-------HHHH-
Confidence 35677888899999999999964 553 11234444444444443 3344 346799953 2 1212
Q ss_pred hhhhccCCCeeeecCCCCc
Q 010067 119 LEIGETNPDIFYTNRSGNR 137 (519)
Q Consensus 119 ~~~g~~~PDi~ytD~~G~r 137 (519)
-...+.+-|.+..|-.|.+
T Consensus 206 ~~l~~~~vd~i~ld~~~~~ 224 (305)
T PRK00957 206 DDLLKFNVDILDHEFASNK 224 (305)
T ss_pred HHHHhCCCCEEEEeecCCC
Confidence 1223566788888876553
No 152
>PRK09505 malS alpha-amylase; Reviewed
Probab=37.82 E-value=70 Score=37.26 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe-eeeeeec---c--------CCCccc-------------cchhHHHHHHHHHHcCCc
Q 010067 38 DKDKLESQLKELKAAGVDGIMVD-VWWGIIE---S--------KGPRQY-------------DWSAYRSLFELIQQYELK 92 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vd-VWWGiVE---~--------~~p~~Y-------------dWs~Y~~l~~mv~~~GLK 92 (519)
+-+.|.+.|..||++||++|-+. ++=.+-. . .+...| ....+++|++.+++.|||
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 45778999999999999999764 2211100 0 000111 245789999999999999
Q ss_pred EEEEEee
Q 010067 93 LQAIMSF 99 (519)
Q Consensus 93 v~~imsf 99 (519)
|..=+-+
T Consensus 308 VilD~V~ 314 (683)
T PRK09505 308 ILFDVVM 314 (683)
T ss_pred EEEEECc
Confidence 9554444
No 153
>PLN02960 alpha-amylase
Probab=37.55 E-value=72 Score=38.42 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=39.7
Q ss_pred CHHHHH-HHHHHHHHcCcceEEEeeeeeeeccCCCccccchh-----------------HHHHHHHHHHcCCcEEEEEee
Q 010067 38 DKDKLE-SQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSA-----------------YRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 38 ~~~~~~-~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~-----------------Y~~l~~mv~~~GLKv~~imsf 99 (519)
.-.++. ..|..||++||+.|.+- .+.|- ++...|-+ ++++++.|++.||+| ||-+
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLm---Pv~e~--~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~V--ILDv 486 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLI---GVQEH--KDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLV--FLDI 486 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEC---CcccC--CCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEE--EEEe
Confidence 335565 55999999999999874 23442 33344543 899999999999999 5554
No 154
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=36.95 E-value=1.8e+02 Score=27.75 Aligned_cols=139 Identities=16% Similarity=0.293 Sum_probs=72.8
Q ss_pred cceEEEeee-eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCC-CCCc------ccccCChhhhhhhccC
Q 010067 54 VDGIMVDVW-WGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGN-VGDV------VTIPIPKWVLEIGETN 125 (519)
Q Consensus 54 VdgV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGN-VGD~------~~IpLP~WV~~~g~~~ 125 (519)
++|.=++.| |.+ + ++++=+.-++.++..++.|++-.++... +-++. .+.+ |..+.+.||...-+
T Consensus 1 itGtF~q~~~~d~-~----~~~~~~~W~~~~~~m~~~GidtlIlq~~-~~~~~~~yps~~~~~~~~~~~~d~l~~~L~-- 72 (166)
T PF14488_consen 1 ITGTFLQPWSWDI-H----QNWTPAQWREEFRAMKAIGIDTLILQWT-GYGGFAFYPSKLSPGGFYMPPVDLLEMILD-- 72 (166)
T ss_pred CceEEEccccchh-h----cCCCHHHHHHHHHHHHHcCCcEEEEEEe-ecCCcccCCccccCccccCCcccHHHHHHH--
Confidence 355666666 655 3 3444456789999999999999777754 22221 1111 12233334433211
Q ss_pred CCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcccceEEEEeeccCCCCCCCCCCCCCCCC
Q 010067 126 PDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELRYPSYPESQGW 205 (519)
Q Consensus 126 PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~~~I~eI~VGlGP~GELRYPSyp~~~gW 205 (519)
-.|+.|- +=++.|+.|. ..++ .+-.+.-.++-+...++... +|.+||+-.||
T Consensus 73 ----~A~~~Gm--kv~~Gl~~~~-~~w~-~~~~~~~~~~~~~v~~el~~--------------------~yg~h~sf~GW 124 (166)
T PF14488_consen 73 ----AADKYGM--KVFVGLYFDP-DYWD-QGDLDWEAERNKQVADELWQ--------------------RYGHHPSFYGW 124 (166)
T ss_pred ----HHHHcCC--EEEEeCCCCc-hhhh-ccCHHHHHHHHHHHHHHHHH--------------------HHcCCCCCceE
Confidence 1233332 4455555554 2222 12223334444555566555 89999988999
Q ss_pred ccCC---CcccccccHHHHHHHHHHHHh
Q 010067 206 VFPG---IGEFQCYDKYLKAEFKEAATA 230 (519)
Q Consensus 206 ~~pG---iGEFQCYDky~~~~f~~~a~~ 230 (519)
=+|- ...+. +.-..+.|.+++++
T Consensus 125 Yip~E~~~~~~~--~~~~~~~l~~~lk~ 150 (166)
T PF14488_consen 125 YIPYEIDDYNWN--APERFALLGKYLKQ 150 (166)
T ss_pred EEecccCCcccc--hHHHHHHHHHHHHH
Confidence 7753 22221 23344555666654
No 155
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=36.81 E-value=45 Score=40.02 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=18.1
Q ss_pred HHHHHHHHcCcceEEE-eee-eeee
Q 010067 44 SQLKELKAAGVDGIMV-DVW-WGII 66 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~v-dVW-WGiV 66 (519)
.-|+.||++||..|++ +|+ ++.|
T Consensus 290 ~hLk~L~eLGVThVeLLPv~df~tv 314 (898)
T TIGR02103 290 QHLKKLADAGVTHLHLLPTFDIATV 314 (898)
T ss_pred HHHHHHHhCCCcEEEEcChhhcCcc
Confidence 4699999999999985 666 6654
No 156
>PRK08445 hypothetical protein; Provisional
Probab=36.79 E-value=40 Score=35.73 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCcceEE---Eeee-eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 43 ESQLKELKAAGVDGIM---VDVW-WGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~---vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
+.+|++||++|++-+. +... -.+-+.-.|+.-.-..|.+..+.++++||++-.-|=|
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~ 204 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMF 204 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEe
Confidence 6899999999999553 3322 1122222356666667789999999999999666555
No 157
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=36.51 E-value=94 Score=27.93 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHH-cCcceEEEeeeeeeec-cCCCccccchhHHHH-HHHHHHcCCcEEEEEeeec
Q 010067 40 DKLESQLKELKA-AGVDGIMVDVWWGIIE-SKGPRQYDWSAYRSL-FELIQQYELKLQAIMSFHQ 101 (519)
Q Consensus 40 ~~~~~~L~~LK~-~GVdgV~vdVWWGiVE-~~~p~~YdWs~Y~~l-~~mv~~~GLKv~~imsfHq 101 (519)
+.+-+++++||. .|.|.|.+.-== +.+ |+=| ....++. -+.+++.|+|| ||++|-
T Consensus 42 rlvpn~~k~lk~~egaeaihfasCm-l~~~PkCp----y~~~eei~Kk~ie~~~i~V--v~gTH~ 99 (101)
T COG5561 42 RLVPNQIKQLKGKEGAEAIHFASCM-LAFKPKCP----YASAEEIAKKEIEKMGIKV--VMGTHF 99 (101)
T ss_pred chhHHHHHHHhhccccceeeeeeee-eccCCCCC----ccCHHHHHHHHHHHhCCcE--Eeecce
Confidence 456789999995 678998875432 233 3222 2223555 46688999999 999994
No 158
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=36.43 E-value=36 Score=35.80 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeecc--------CCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIES--------KGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~--------~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
+..|++||++|++.+.-- -+|. -.|++..|.-+.+.++.++++|+++-.-|=+
T Consensus 150 ~e~l~~LkeAGld~~~~~----g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGG----GAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHcCCCcCCCC----cccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 567999999999977510 3343 2366777888899999999999999544444
No 159
>PLN03231 putative alpha-galactosidase; Provisional
Probab=36.21 E-value=59 Score=35.13 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=38.6
Q ss_pred CHHHHHHHH----HHHHHcCcceEEEeeeeeeecc----------------CCCcccc-----ch------hHHHHHHHH
Q 010067 38 DKDKLESQL----KELKAAGVDGIMVDVWWGIIES----------------KGPRQYD-----WS------AYRSLFELI 86 (519)
Q Consensus 38 ~~~~~~~~L----~~LK~~GVdgV~vdVWWGiVE~----------------~~p~~Yd-----Ws------~Y~~l~~mv 86 (519)
+++.+.+.. +-||.+|-+-|.||.-|-.-++ .+-|+.- |- |.+.|++.|
T Consensus 16 ~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyv 95 (357)
T PLN03231 16 SEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKV 95 (357)
T ss_pred CHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHH
Confidence 454444444 3689999999999987754321 1122222 22 899999999
Q ss_pred HHcCCcE
Q 010067 87 QQYELKL 93 (519)
Q Consensus 87 ~~~GLKv 93 (519)
++.|||+
T Consensus 96 Hs~GLKf 102 (357)
T PLN03231 96 HALGLKL 102 (357)
T ss_pred HhCCcce
Confidence 9999998
No 160
>PRK05402 glycogen branching enzyme; Provisional
Probab=36.20 E-value=70 Score=37.20 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=38.1
Q ss_pred CHHHHHHHH-HHHHHcCcceEEEeeeeeeeccCCCccccch-----------------hHHHHHHHHHHcCCcEEEEEee
Q 010067 38 DKDKLESQL-KELKAAGVDGIMVDVWWGIIESKGPRQYDWS-----------------AYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 38 ~~~~~~~~L-~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKv~~imsf 99 (519)
.-+++...| ..||++||+.|.+-=- .|. |...+|- .+++|++.|++.||+|..=+-+
T Consensus 263 ~~~~i~~~l~~ylk~LGv~~i~L~Pi---~e~--~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 263 SYRELADQLIPYVKEMGFTHVELLPI---AEH--PFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCc---ccC--CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 336777775 9999999999976431 221 1111222 3789999999999999433334
No 161
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=35.91 E-value=73 Score=33.04 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccc--c--chhHHHHHHHHHHcCCcE--EEEEeee
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQY--D--WSAYRSLFELIQQYELKL--QAIMSFH 100 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y--d--Ws~Y~~l~~mv~~~GLKv--~~imsfH 100 (519)
+.+|++||+.+||.|.+|.. |.=|- =-+.| + =.-|.+.+.++++.|++| ++++..|
T Consensus 100 E~~~eklk~~~vdvvsLDfv-gDn~v-Ik~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~ 161 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFV-GDNDV-IKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLD 161 (275)
T ss_pred HHHHHHHHHhcCcEEEEeec-CChHH-HHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEec
Confidence 67899999999999999975 21110 00111 2 246999999999999999 4555554
No 162
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=35.75 E-value=9.5 Score=39.69 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=26.4
Q ss_pred eeEEecccccccCcc-chhHHHHHHHHhccC
Q 010067 422 GVTYLRLSDDLLAEN-NFKIFKIFVKKMHAD 451 (519)
Q Consensus 422 ~FTylRm~~~lf~~~-n~~~F~~FV~~m~~~ 451 (519)
=||.+|||..++.|. +|.++..|++.+...
T Consensus 97 PfTiqRlcEl~~~P~~~y~~~~k~~~alek~ 127 (288)
T PF09184_consen 97 PFTIQRLCELLLDPRKHYKTLDKFLRALEKV 127 (288)
T ss_pred ChhHHHHHHHHhChhhccccHHHHHHHHhee
Confidence 399999999999986 689999999998765
No 163
>PRK15108 biotin synthase; Provisional
Probab=34.74 E-value=59 Score=34.35 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccc-------cchhHHHHHHHHHHcCCcE
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQY-------DWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y-------dWs~Y~~l~~mv~~~GLKv 93 (519)
+.+|++||++|||.+.++. |. .|+.| +|....+..+.+++.|+++
T Consensus 136 ~e~l~~LkeAGld~~n~~l-----eT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNL-----DT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeecc-----cc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 6789999999999988753 32 22222 5666667777778889876
No 164
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=34.43 E-value=71 Score=34.15 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeee-ccC-----CCcccc----chhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 010067 40 DKLESQLKELKAAGVDGIMVDVW-WGII-ESK-----GPRQYD----WSAYRSLFELIQQYELKLQAIMSFHQCGGNVG 107 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVW-WGiV-E~~-----~p~~Yd----Ws~Y~~l~~mv~~~GLKv~~imsfHqCGGNVG 107 (519)
+++++.+++|.++|+..|-+|.= |+.. ... +....+ =..|.+++..+-+ |+.--..+++|-|-||..
T Consensus 170 ~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~-~~p~d~~v~~HiC~Gn~~ 247 (368)
T PRK06520 170 KTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALA-GKPADLTIGLHVCRGNFR 247 (368)
T ss_pred HHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEeecCCCC
Confidence 47788889999999999999987 7642 110 001011 1223344444333 664444789999999853
No 165
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=33.88 E-value=2.4e+02 Score=28.11 Aligned_cols=110 Identities=14% Similarity=0.234 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc--cchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCC
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY--DWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIP 115 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP 115 (519)
|...++++|++|+++|++-+++|| -+|+| |.+.=-+.++.+|+..-++ .+..|-- +.=|
T Consensus 10 d~~~l~~~i~~l~~~g~~~lH~Dv--------mDG~Fvpn~tfg~~~i~~i~~~~~~~--~~dvHLM---------v~~p 70 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDV--------MDNHYVPNLTFGAPICKALRDYGITA--PIDVHLM---------VKPV 70 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec--------ccCcccCccccCHHHHHHHHHhCCCC--CEEEEec---------cCCH
Confidence 456789999999999999999998 35666 5555556677777653222 2444522 2223
Q ss_pred h-hhhhhhccCCCeeeecCCCCcc-cccc----ccccCCccCCCCCChHHHHHHHHH
Q 010067 116 K-WVLEIGETNPDIFYTNRSGNRN-KEYL----TIGVDHKPLFDGRTAIEIYSDYMK 166 (519)
Q Consensus 116 ~-WV~~~g~~~PDi~ytD~~G~rn-~E~l----Slg~D~~pvl~GRTpi~~Y~dfm~ 166 (519)
. |+..-.+.-+|++..--.=..+ .+.| ..|+----.+.--||++.+..+..
T Consensus 71 ~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~ 127 (220)
T PRK08883 71 DRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD 127 (220)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH
Confidence 3 5544445556655443331111 1111 233322234566789888876653
No 166
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=33.80 E-value=1.2e+02 Score=29.61 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeecc------CCCccccchhHHHHHHHHHHcCCcEEEEE-eeecc
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIES------KGPRQYDWSAYRSLFELIQQYELKLQAIM-SFHQC 102 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~------~~p~~YdWs~Y~~l~~mv~~~GLKv~~im-sfHqC 102 (519)
+..++.++++|++.|.+-.=-. +. .....-+++...+.++.+++.|+++++.+ ....|
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~ 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSAS--ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC
Confidence 6689999999999999887422 10 01122367778899999999999998877 45544
No 167
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=33.53 E-value=3.7e+02 Score=28.17 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=54.9
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 010067 36 LEDKDKLESQLKELKAAG--VDGIMVDVWWGIIESKGPRQYDWS-----AYRSLFELIQQYELKLQAIMSFHQCGGNVGD 108 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~G--VdgV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD 108 (519)
-.+.+++..-.+.+++.| +|.|.+|.=|- .+.+.|+|+ --+++++-+++.|+|| ++..|-+-. .
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~--~~~~~P~v~---~ 90 (339)
T cd06603 20 YKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKRYFTWDKKKFPDPEKMQEKLASKGRKL--VTIVDPHIK---R 90 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCCceEeCcccCCCHHHHHHHHHHCCCEE--EEEecCcee---c
Confidence 356778888888888766 57888887442 134456554 3567889999999999 555552211 0
Q ss_pred cccccCChhhhhhhccCCCeeeecCCCCc
Q 010067 109 VVTIPIPKWVLEIGETNPDIFYTNRSGNR 137 (519)
Q Consensus 109 ~~~IpLP~WV~~~g~~~PDi~ytD~~G~r 137 (519)
+.. .|. -+++.+. +.+.++.+|..
T Consensus 91 ~~~--~~~--y~e~~~~-g~~vk~~~g~~ 114 (339)
T cd06603 91 DDG--YYV--YKEAKDK-GYLVKNSDGGD 114 (339)
T ss_pred CCC--CHH--HHHHHHC-CeEEECCCCCE
Confidence 010 122 2334444 78999988854
No 168
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.41 E-value=1e+02 Score=30.85 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 42 LESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 42 ~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
.++-++.++++|+++|.+... -+|. .....++.+.++++|++. ++..|
T Consensus 90 ~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~--~~~v~ 137 (244)
T PRK13125 90 LDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKP--VFFTS 137 (244)
T ss_pred HHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCE--EEEEC
Confidence 355688899999999999421 0121 134678999999999999 66664
No 169
>PRK15452 putative protease; Provisional
Probab=33.26 E-value=43 Score=36.92 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEe
Q 010067 17 NYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVD 60 (519)
Q Consensus 17 ~~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vd 60 (519)
.+++|||.+|. +..++ .-+.+...|+.|+++|||||.|.
T Consensus 58 ~g~kvyvt~n~--i~~e~---el~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 58 LGKKFYVVVNI--APHNA---KLKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred cCCEEEEEecC--cCCHH---HHHHHHHHHHHHHhCCCCEEEEc
Confidence 45789999883 32222 23677888999999999999885
No 170
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=32.90 E-value=33 Score=33.86 Aligned_cols=20 Identities=30% Similarity=0.737 Sum_probs=15.8
Q ss_pred ccchhHHHHHHHHHHcCCcE
Q 010067 74 YDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 74 YdWs~Y~~l~~mv~~~GLKv 93 (519)
|+|+.|+.+++.+++.|++|
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipv 105 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPV 105 (213)
T ss_dssp --GGGTHHHHHHHHTSS--E
T ss_pred CchHHHHHHHHHHHHCCCCE
Confidence 57999999999999999998
No 171
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=32.84 E-value=59 Score=32.53 Aligned_cols=60 Identities=8% Similarity=0.008 Sum_probs=38.0
Q ss_pred hHHHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeeeccccc
Q 010067 332 YRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAGENALS 391 (519)
Q Consensus 332 Y~~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~ 391 (519)
...+++.|-+.|+...++|+.-.--...--...--++++..+...+++.||..+|||.--
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GEf 182 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDESFLGRELDRELIEELPELNKKYGVDPCGEGGEF 182 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--GGGTT-B--HHHHHHHHHHHHHH---TT-TTTTE
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCChHHCCCCccHHHHHHHHHHHhhcCccccCCCeeE
Confidence 567788888889999999987543321111233346899999999999999999999753
No 172
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=32.57 E-value=73 Score=37.41 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchhHH-HHHHHHHHc--CCcEEEEEeeeccCCCCCCcccccCC
Q 010067 40 DKLESQLKELKAAGVDGIMVDVW-WGIIESKGPRQYDWSAYR-SLFELIQQY--ELKLQAIMSFHQCGGNVGDVVTIPIP 115 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVW-WGiVE~~~p~~YdWs~Y~-~l~~mv~~~--GLKv~~imsfHqCGGNVGD~~~IpLP 115 (519)
.+++..++.|.++|+.-|-+|.= |- |.-.-.+=+|..|. ...+..+.+ |++--.-+.+|-|-||++|- +
T Consensus 575 ~a~~~ev~~L~~aG~~~IQIDEPaL~--~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i----~- 647 (750)
T TIGR01371 575 LAIRDEVLDLEEAGIKIIQIDEPALR--EGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEI----I- 647 (750)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCchhh--hcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHH----H-
Confidence 36677889999999999999986 63 32111223555543 233444332 55311234899999987641 1
Q ss_pred hhhhhhhccCCCeeeec
Q 010067 116 KWVLEIGETNPDIFYTN 132 (519)
Q Consensus 116 ~WV~~~g~~~PDi~ytD 132 (519)
.++. +.+-|.+..|
T Consensus 648 ~~l~---~l~vD~i~lE 661 (750)
T TIGR01371 648 ESIA---DLDADVISIE 661 (750)
T ss_pred HHHH---hCCCCEEEEE
Confidence 2332 5566766666
No 173
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.49 E-value=2.2e+02 Score=30.11 Aligned_cols=63 Identities=10% Similarity=0.388 Sum_probs=40.9
Q ss_pred ccCHHHHHHHHHHHHHcCc--ceEEEeee--------eee---eccCC--C---ccccc------hhHHHHHHHHHHcCC
Q 010067 36 LEDKDKLESQLKELKAAGV--DGIMVDVW--------WGI---IESKG--P---RQYDW------SAYRSLFELIQQYEL 91 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~GV--dgV~vdVW--------WGi---VE~~~--p---~~YdW------s~Y~~l~~mv~~~GL 91 (519)
-.+.+.++.-++.+++.|+ |+|.+|.| |.. ++..+ + +.++| --.+++++-+++.|+
T Consensus 20 Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~ 99 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGV 99 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCC
Confidence 3567888999999999885 88989842 111 11111 1 12222 246899999999999
Q ss_pred cEEEEEeee
Q 010067 92 KLQAIMSFH 100 (519)
Q Consensus 92 Kv~~imsfH 100 (519)
|+ ++..|
T Consensus 100 kv--~l~v~ 106 (340)
T cd06597 100 KV--LLWQI 106 (340)
T ss_pred EE--EEEec
Confidence 99 54443
No 174
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=32.31 E-value=6.2e+02 Score=26.71 Aligned_cols=66 Identities=9% Similarity=0.151 Sum_probs=48.3
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEee----eeeee--------cc--------CCCccccchhHHHHHHHHHHcCCc
Q 010067 33 DNVLEDKDKLESQLKELKAAGVDGIMVDV----WWGII--------ES--------KGPRQYDWSAYRSLFELIQQYELK 92 (519)
Q Consensus 33 ~~~~~~~~~~~~~L~~LK~~GVdgV~vdV----WWGiV--------E~--------~~p~~YdWs~Y~~l~~mv~~~GLK 92 (519)
...+-..+.|++.+..|...+.+..+.-. -|-+- +. ...+.|.=+-+++|++.|++.|+.
T Consensus 11 aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~ 90 (329)
T cd06568 11 ARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHIT 90 (329)
T ss_pred cCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 34577889999999999999988776543 24321 11 122467778899999999999999
Q ss_pred EEEEEe
Q 010067 93 LQAIMS 98 (519)
Q Consensus 93 v~~ims 98 (519)
|+|-+-
T Consensus 91 vIPEiD 96 (329)
T cd06568 91 VVPEID 96 (329)
T ss_pred EEEecC
Confidence 976543
No 175
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=32.19 E-value=86 Score=32.37 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 93 (519)
+.++.-|+.+|++|.+.|++.- +-=-.+=+.-.+|++++.+.|+++
T Consensus 90 ~kvdeyl~e~~~lGfe~iEIS~--------G~i~m~~eek~~lIe~a~d~Gf~v 135 (258)
T COG1809 90 DKVDEYLNEAKELGFEAIEISN--------GTIPMSTEEKCRLIERAVDEGFMV 135 (258)
T ss_pred ccHHHHHHHHHHcCccEEEecC--------CeeecchHHHHHHHHHHHhcccEE
Confidence 3568889999999999888752 222334567788999999999988
No 176
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=32.07 E-value=76 Score=30.86 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 010067 39 KDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 93 (519)
...++.-|+..+++|.+||.+.. +..... +.+-.+++-+.++++||++
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-~~~~~~------~~~~~~~l~~~l~~~gl~i 61 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-GDLFPA------DYKELAELKELLADYGLEI 61 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-cccCCc------hhhhHHHHHHHHHHcCcEE
Confidence 45678899999999999999987 222221 2223899999999999998
No 177
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=31.94 E-value=1.1e+02 Score=32.04 Aligned_cols=63 Identities=27% Similarity=0.372 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChh
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKW 117 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~W 117 (519)
+.+...+.|+.+|++|+.. +||. .|.-+-= --..+.++.++.|+.|++.=.|| .....|.|
T Consensus 36 ~~~~~~~El~~~k~~Gg~t--------iVd~-T~~g~GR-d~~~l~~is~~tGv~II~~TG~y---------~~~~~p~~ 96 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRT--------IVDA-TPIGLGR-DVEALREISRRTGVNIIASTGFY---------KEPFYPEW 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEE--------EEE---SGGGTB--HHHHHHHHHHHT-EEEEEEEE----------SGGCSCHH
T ss_pred hHHHHHHHHHHHHHcCCCE--------EEec-CCcccCc-CHHHHHHHHHHhCCeEEEeCCCC---------ccccCChh
Confidence 6678888999999999876 4664 3432221 12678889999999994444454 22336777
Q ss_pred hh
Q 010067 118 VL 119 (519)
Q Consensus 118 V~ 119 (519)
+.
T Consensus 97 ~~ 98 (308)
T PF02126_consen 97 VR 98 (308)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 178
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=31.69 E-value=87 Score=30.95 Aligned_cols=60 Identities=12% Similarity=0.006 Sum_probs=43.4
Q ss_pred hHHHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeeeccccc
Q 010067 332 YRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAGENALS 391 (519)
Q Consensus 332 Y~~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~ 391 (519)
-..|++.+.+.|.....+|+.-.--...--.+.--++++..+....++.|+.++|||.--
T Consensus 124 ~~el~~~~~~~G~~~~i~~v~~~~l~~~~lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE~ 183 (218)
T TIGR03679 124 QEEYLRELVERGFRFIIVSVSAYGLDESWLGREIDEKYIEKLKALNKRYGINPAGEGGEY 183 (218)
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCCChHHCCCccCHHHHHHHHHHHhhcCccccCCCcee
Confidence 567899999999999999986432111111133335788888888899999999999753
No 179
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=31.64 E-value=61 Score=33.29 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=47.7
Q ss_pred CCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEE
Q 010067 17 NYVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAI 96 (519)
Q Consensus 17 ~~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~i 96 (519)
.+|+||-.-.|--+- .-...++.-|+.+|++|++.|+|.. +--...=.-..++++++++.||||.+=
T Consensus 66 ~gV~v~~GGtl~E~a-----~~q~~~~~yl~~~k~lGf~~IEiSd--------Gti~l~~~~r~~~I~~~~~~Gf~v~~E 132 (244)
T PF02679_consen 66 HGVYVYPGGTLFEVA-----YQQGKFDEYLEECKELGFDAIEISD--------GTIDLPEEERLRLIRKAKEEGFKVLSE 132 (244)
T ss_dssp TT-EEEE-HHHHHHH-----HHTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEEE
T ss_pred cCCeEeCCcHHHHHH-----HhcChHHHHHHHHHHcCCCEEEecC--------CceeCCHHHHHHHHHHHHHCCCEEeec
Confidence 345555555444332 1144679999999999999999853 222334455678899999999998444
Q ss_pred EeeeccCCCCCCcccccCChhhhh
Q 010067 97 MSFHQCGGNVGDVVTIPIPKWVLE 120 (519)
Q Consensus 97 msfHqCGGNVGD~~~IpLP~WV~~ 120 (519)
..-. +.+.+...++..|+..
T Consensus 133 vG~K----~~~~~~~~~~~~~i~~ 152 (244)
T PF02679_consen 133 VGKK----DPESDFSLDPEELIEQ 152 (244)
T ss_dssp ES-S----SHHHHTT--CCHHHHH
T ss_pred ccCC----CchhcccCCHHHHHHH
Confidence 3321 1222233336677765
No 180
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=31.52 E-value=1.2e+02 Score=33.70 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 39 KDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
.+.++..+++..++||+.|.+-.--..++ -.++.++.++++|+++++.+|+
T Consensus 95 ddvv~~~v~~A~~~Gvd~irif~~lnd~~----------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 95 DDVVESFVQKSVENGIDIIRIFDALNDVR----------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCcHH----------HHHHHHHHHHHcCCeEEEEEEe
Confidence 34568888999999999988876533332 3788999999999999988887
No 181
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=31.27 E-value=1.6e+02 Score=28.88 Aligned_cols=56 Identities=23% Similarity=0.426 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
+.+.+++.+++||+. +|-|-+-.=||.-....|. +.-+++++.+-+.|..+ |++-|
T Consensus 160 ~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~----~~~~~la~~l~~~G~D~--IiG~H 215 (239)
T cd07381 160 DLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYPT----PEQRELARALIDAGADL--VIGHH 215 (239)
T ss_pred CHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCCC----HHHHHHHHHHHHCCCCE--EEcCC
Confidence 467899999999988 9999999999974322222 23356666666789888 99888
No 182
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=31.23 E-value=1.2e+02 Score=29.84 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 010067 41 KLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 93 (519)
.++..|+.+.++|+++|.+. .+-.....+..++=...+++-++++++||++
T Consensus 11 ~~~~~~~~~~~~G~~~vel~--~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l 61 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLF--LGNPRSWKGVRLSEETAEKFKEALKENNIDV 61 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEE--CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 36889999999999999983 2222111122233345888999999999985
No 183
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=31.11 E-value=1.3e+02 Score=33.37 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCC-------ccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGP-------RQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
+..|+.||++|+..|.+. +|...+ +..+.+.+.+.+++++++|+++.+-+-+
T Consensus 287 ~ell~~l~~aG~~~v~iG-----iES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLG-----TEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred HHHHHHHHHhCCcEEEEc-----cccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 346789999999988886 465433 4567888999999999999988554444
No 184
>PRK15108 biotin synthase; Provisional
Probab=31.11 E-value=5.8e+02 Score=27.07 Aligned_cols=56 Identities=16% Similarity=0.332 Sum_probs=41.9
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 37 EDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 37 ~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
-+++++.+..+.+++.|+.-|.+-.=| + .|-.-++.+|.++++.+++.|+++ ++|.
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g---~--~p~~~~~e~i~~~i~~ik~~~i~v--~~s~ 131 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAW---K--NPHERDMPYLEQMVQGVKAMGLET--CMTL 131 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecC---C--CCCcchHHHHHHHHHHHHhCCCEE--EEeC
Confidence 466788888888999999998653323 1 344567899999999999998865 5543
No 185
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.04 E-value=6.6e+02 Score=26.61 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=48.3
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEee----eeeee--------cc-------------------CCCccccchhHHH
Q 010067 33 DNVLEDKDKLESQLKELKAAGVDGIMVDV----WWGII--------ES-------------------KGPRQYDWSAYRS 81 (519)
Q Consensus 33 ~~~~~~~~~~~~~L~~LK~~GVdgV~vdV----WWGiV--------E~-------------------~~p~~YdWs~Y~~ 81 (519)
...+-+.+.|++.+..|...+++...+-. -|-+. |. ...+.|-=+-+++
T Consensus 11 aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~e 90 (357)
T cd06563 11 SRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIRE 90 (357)
T ss_pred cccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHH
Confidence 34566788999999999999988877532 34321 11 0136788899999
Q ss_pred HHHHHHHcCCcEEEEEe
Q 010067 82 LFELIQQYELKLQAIMS 98 (519)
Q Consensus 82 l~~mv~~~GLKv~~ims 98 (519)
+++.|++.|+.|+|-+-
T Consensus 91 iv~yA~~rgI~VIPEID 107 (357)
T cd06563 91 IVAYAAERGITVIPEID 107 (357)
T ss_pred HHHHHHHcCCEEEEecC
Confidence 99999999999977543
No 186
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=30.57 E-value=1e+02 Score=30.60 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=36.4
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 44 SQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
-+...||++|+++|.+. +++++|.=+--.+-++.+.++||+. |+|.
T Consensus 72 vS~~mLkd~G~~~viiG--------HSERRf~Etdi~~Kv~~a~~~gl~~--IvCi 117 (205)
T TIGR00419 72 ISAEMLKDIGAKGTLIN--------HSERRMKLADIEKKIARLKELGLTS--VVCT 117 (205)
T ss_pred CCHHHHHHcCCCEEEEC--------cccCCCCccHHHHHHHHHHHCCCEE--EEEE
Confidence 35678999999999986 5566666666677777888999987 8887
No 187
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=30.55 E-value=1.4e+02 Score=28.04 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=59.6
Q ss_pred HHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhhhhccC
Q 010067 46 LKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIGETN 125 (519)
Q Consensus 46 L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g~~~ 125 (519)
..+||+.||++|++=+.=|.- |.=..|.+-.+.++++||++-+..-++.| |..|. .. ==.++.+..+
T Consensus 12 w~~~k~~gi~fviikateG~~-------~~D~~~~~n~~~a~~aGl~~G~Yhf~~~~--~~~~a-~~-qA~~f~~~~~-- 78 (181)
T PF01183_consen 12 WQKVKAAGIDFVIIKATEGTS-------YVDPYFESNIKNAKAAGLPVGAYHFARAT--NSSDA-EA-QADYFLNQVK-- 78 (181)
T ss_dssp HHHHHHTTEEEEEEEEEETTT-------EE-TTHHHHHHHHHHTTSEEEEEEE--TT--THCHH-HH-HHHHHHHCTH--
T ss_pred HHHHHHCCCCEEEEEeeeCCC-------eecchHHHHHHHHHHcCCeEEEEEEeccC--CcccH-HH-HHHHHHHHhc--
Confidence 778899999999999864431 22246788889999999999777666544 32221 00 0013322211
Q ss_pred CCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHh
Q 010067 126 PDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFD 174 (519)
Q Consensus 126 PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~ 174 (519)
......+-+++|-+--...........+.++.|.+.+..
T Consensus 79 ----------~~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~ 117 (181)
T PF01183_consen 79 ----------GGDPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEK 117 (181)
T ss_dssp ----------TSSTSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHH
T ss_pred ----------ccCCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 111222223333331111223348888999999999865
No 188
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=30.32 E-value=3.9e+02 Score=27.15 Aligned_cols=103 Identities=17% Similarity=0.375 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhhhhh
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWVLEIG 122 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV~~~g 122 (519)
...++++.+.|.|+|+|. |-..-.-.--+++++.+|++.|-+ || | +|+...|. |.
T Consensus 17 ~~~~~~~~~~gtdai~vG---------GS~~vt~~~~~~~v~~ik~~~lPv--il-f------p~~~~~i~-~~------ 71 (223)
T TIGR01768 17 DEIAKAAAESGTDAILIG---------GSQGVTYEKTDTLIEALRRYGLPI--IL-F------PSNPTNVS-RD------ 71 (223)
T ss_pred HHHHHHHHhcCCCEEEEc---------CCCcccHHHHHHHHHHHhccCCCE--EE-e------CCCccccC-cC------
Confidence 458889999999999985 333334457889999999988666 66 7 23322321 11
Q ss_pred ccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcccceEEEEeeccCCC
Q 010067 123 ETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAG 192 (519)
Q Consensus 123 ~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~~~I~eI~VGlGP~G 192 (519)
.| -+||..==..+|.+||. ....+-...|++ +. ..+|.+=+|=++|.+
T Consensus 72 -aD-a~l~~svlNs~~~~~ii---------------g~~~~~~~~~~~----~~-~e~ip~gYiv~~~~~ 119 (223)
T TIGR01768 72 -AD-ALFFPSVLNSDDPYWII---------------GAQIEAAPKFKK----IG-EEIIPEGYIIVNPGG 119 (223)
T ss_pred -CC-EEEEEEeecCCCchHHH---------------hHHHHHHHHHhh----hc-ceecceEEEEECCCc
Confidence 11 25666655666666665 233333433332 22 248999999999976
No 189
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=30.11 E-value=1.1e+02 Score=32.40 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCcceEEEee-eeeeeccCCCccccchhHHHHHH----H-HHHcCCcEEEEEeeeccCCCCCCc
Q 010067 40 DKLESQLKELKAAGVDGIMVDV-WWGIIESKGPRQYDWSAYRSLFE----L-IQQYELKLQAIMSFHQCGGNVGDV 109 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdV-WWGiVE~~~p~~YdWs~Y~~l~~----m-v~~~GLKv~~imsfHqCGGNVGD~ 109 (519)
.+++..++.|+.+||.-|-+|. -|+.-.+... |..|.+.+. . ++..|-++ -.++|-|.|+..+.
T Consensus 158 ~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~d~--~i~~HiCy~e~~~~ 227 (330)
T COG0620 158 LALRDEVKDLEDAGIKIIQIDEPALREGLPLRR----DDDYLEWAVEAINLAAAGVGADT--QIHLHICYSEFNDI 227 (330)
T ss_pred HHHHHHHHHHHHcCCCEEeechhhhhcCCcccc----chHHHHHHHHHHHHHHhcCCCCc--EEEEEEECCcccch
Confidence 4677788999999999999999 4877655322 234433322 2 23345555 66788999976553
No 190
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=30.04 E-value=1.5e+02 Score=35.32 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=37.1
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 010067 34 NVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 34 ~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 93 (519)
+...++++++++|+.||++|++-|++- +.=|. .+..++|-+.||=|
T Consensus 315 G~~~~~~~~~~dl~lmk~~n~N~vRts---HyP~~-----------~~~ydLcDelGllV 360 (808)
T COG3250 315 GRVTDEDAMERDLKLMKEANMNSVRTS---HYPNS-----------EEFYDLCDELGLLV 360 (808)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEec---CCCCC-----------HHHHHHHHHhCcEE
Confidence 566788899999999999999999875 44443 35678888889887
No 191
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=29.98 E-value=1e+02 Score=36.47 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=39.4
Q ss_pred CHHHH-HHHHHHHHHcCcceEEEeeeeeeeccCCCccccc-----------------hhHHHHHHHHHHcCCcEEEEEee
Q 010067 38 DKDKL-ESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDW-----------------SAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 38 ~~~~~-~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdW-----------------s~Y~~l~~mv~~~GLKv~~imsf 99 (519)
.-+++ +..|..||++||+.|.+-- +.|. +....| ..+++|++.++++||+|..=+-+
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmP---i~e~--~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMA---IQEH--AYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECC---cccc--CCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 33554 5679999999999998642 2232 111123 34899999999999999443333
Q ss_pred -ecc
Q 010067 100 -HQC 102 (519)
Q Consensus 100 -HqC 102 (519)
|.|
T Consensus 323 nH~~ 326 (758)
T PLN02447 323 SHAS 326 (758)
T ss_pred cccc
Confidence 443
No 192
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=29.97 E-value=1.5e+02 Score=35.68 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc-------------cchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY-------------DWSAYRSLFELIQQYELKLQAIMSFHQCG 103 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~imsfHqCG 103 (519)
+.+.+.|..|+++||+.|-+.=-.-.... +...| ..+.++++++.++++||||..=+-+--|+
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~g-s~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPG-STHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCC-CCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 67889999999999999977553321110 11122 35789999999999999996666665454
No 193
>PRK06233 hypothetical protein; Provisional
Probab=29.89 E-value=1.1e+02 Score=32.87 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eee-eccCC---CccccchhHHHHHHH----HHH--cCCcEEEEEeeeccCCCCC
Q 010067 40 DKLESQLKELKAAGVDGIMVDVW-WGI-IESKG---PRQYDWSAYRSLFEL----IQQ--YELKLQAIMSFHQCGGNVG 107 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVW-WGi-VE~~~---p~~YdWs~Y~~l~~m----v~~--~GLKv~~imsfHqCGGNVG 107 (519)
+++++.+++|.++|++.|-+|.= |+. .+... ..--.+..+.++++. +.. .|+.--..+++|-|-||..
T Consensus 171 ~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~d~~i~~H~C~Gn~~ 249 (372)
T PRK06233 171 QAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADLPEDLTVTTHICRGNFK 249 (372)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCCCcCCEEEEEeeCCCCC
Confidence 46778889999999999999986 763 22100 000023334333322 111 1553334679999998863
No 194
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=29.60 E-value=37 Score=35.00 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=42.9
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHH----HHHHHcCCcEEEEEeee
Q 010067 44 SQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLF----ELIQQYELKLQAIMSFH 100 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~----~mv~~~GLKv~~imsfH 100 (519)
.+|.+|+..||+.|-.--.|= ++...++.|- ..+++|. .-+.++|||+.+-+..|
T Consensus 15 eDlekMa~sGI~~Vit~AhdP-~~~~~~~v~~-~h~~rl~~~E~~Ra~~~Gl~~~vavGvH 73 (254)
T COG1099 15 EDLEKMALSGIREVITLAHDP-YPMKTAEVYL-DHFRRLLGVEPERAEKAGLKLKVAVGVH 73 (254)
T ss_pred HHHHHHHHhChhhhhhcccCC-CCcccHHHHH-HHHHHHHccchhhHHhhCceeeEEeccC
Confidence 499999999999999888887 6766666652 2233333 34789999999999999
No 195
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=29.46 E-value=3e+02 Score=28.83 Aligned_cols=111 Identities=12% Similarity=0.114 Sum_probs=63.6
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc--ccCChhhhhh
Q 010067 44 SQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVT--IPIPKWVLEI 121 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~--IpLP~WV~~~ 121 (519)
.-++.|+++|+. |. =.++...+... .....+.++.++++|+.+..-.-.. .| |.|+.. ..|=.++.+.
T Consensus 188 ell~~L~~~g~~-v~-----i~l~~~h~~el-~~~~~~ai~~L~~~Gi~v~~q~vLl--~g-vNd~~~~l~~l~~~l~~~ 257 (321)
T TIGR03822 188 ALIAALKTSGKT-VY-----VALHANHAREL-TAEARAACARLIDAGIPMVSQSVLL--RG-VNDDPETLAALMRAFVEC 257 (321)
T ss_pred HHHHHHHHcCCc-EE-----EEecCCChhhc-CHHHHHHHHHHHHcCCEEEEEeeEe--CC-CCCCHHHHHHHHHHHHhc
Confidence 445667777743 11 13333334443 4777888888889998874433332 23 456543 2344566544
Q ss_pred hccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcc
Q 010067 122 GETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEA 178 (519)
Q Consensus 122 g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~ 178 (519)
|-.---++..|..+... +-+++.+.++++|+..+...+.|...
T Consensus 258 gv~pyyl~~~~p~~g~~--------------~f~~~~~~~~~i~~~l~~~~~g~~~p 300 (321)
T TIGR03822 258 RIKPYYLHHLDLAPGTA--------------HFRVTIEEGQALVRALRGRISGLAQP 300 (321)
T ss_pred CCeeEEEEecCCCCCcc--------------cccCcHHHHHHHHHHHHHhCCCCcce
Confidence 33322244444443321 12367899999999999998887643
No 196
>PRK12677 xylose isomerase; Provisional
Probab=29.14 E-value=1.2e+02 Score=32.73 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCcceEEEee---e-eeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 010067 41 KLESQLKELKAAGVDGIMVDV---W-WGIIESKGPRQYDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdV---W-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 93 (519)
.++.-+++++++|+++|++.. + |+.-.. ..+ ...+++-++++++||+|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~----~~~-~~~~~lk~~l~~~GL~v 83 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDA----ERD-RIIKRFKKALDETGLVV 83 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChh----hhH-HHHHHHHHHHHHcCCee
Confidence 467899999999999998831 2 322211 011 24788999999999998
No 197
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.02 E-value=1.6e+02 Score=29.24 Aligned_cols=52 Identities=15% Similarity=0.010 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHc-CCcE
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQY-ELKL 93 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~-GLKv 93 (519)
..|+..|+.+|++|+++|.+.+=...-.. .+. .+=...+++.++++++ |+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~i 62 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL-SRP-LKKERAEKFKAIAEEGPSICL 62 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC-CCC-CCHHHHHHHHHHHHHcCCCcE
Confidence 45788999999999999998763210000 000 0115688899999999 6665
No 198
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=28.75 E-value=5.3e+02 Score=24.95 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=77.3
Q ss_pred CccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHc-CCcEEEE
Q 010067 18 YVPIYVMLPLGVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQY-ELKLQAI 96 (519)
Q Consensus 18 ~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~-GLKv~~i 96 (519)
..++.+...+.+.| ..+++.+++.|++.|.+.. | - -.+++.+|++.. ++++.++
T Consensus 36 ~~~i~~~~~~nv~N-----------~~s~~~~~~~G~~~i~ls~-----E------L---~~~ei~~i~~~~~~~~~Ev~ 90 (233)
T PF01136_consen 36 DLKIIADYSLNVFN-----------SESARFLKELGASRITLSP-----E------L---SLEEIKEIAENSPGVPLEVI 90 (233)
T ss_pred CCcEEEecCccCCC-----------HHHHHHHHHcCCCEEEECc-----c------C---CHHHHHHHHHhCCCCeEEEE
Confidence 45666666666544 4588999999999998852 1 1 577888888888 7777553
Q ss_pred -------Eeeecc------C---CCCCC---cccccCChhhhhhhccCCCeeeecCCCCcc------------ccccccc
Q 010067 97 -------MSFHQC------G---GNVGD---VVTIPIPKWVLEIGETNPDIFYTNRSGNRN------------KEYLTIG 145 (519)
Q Consensus 97 -------msfHqC------G---GNVGD---~~~IpLP~WV~~~g~~~PDi~ytD~~G~rn------------~E~lSlg 145 (519)
|..+.| + +|.|. .|.- --.++.+.+...+-..++|..|+.. ++-+..|
T Consensus 91 v~G~~~~m~s~~C~~~~~~~~~~~~~~~c~~~c~~-~~~l~~~~~~~~~~~~~~~~~~~~i~n~~~l~l~~~l~~L~~~G 169 (233)
T PF01136_consen 91 VHGNLPMMVSEYCLISSYLGGRSGNKGKCSKPCRK-DYFLLDDDGKGEPFPIFEDNCGTHILNSKDLCLLDELPELKDAG 169 (233)
T ss_pred EeCCcccccCCccHHHhcccCCCccCCCccccccc-cceecccccCcccccchhhccCccccCHHHhhHHHHHHHHHHcC
Confidence 333332 1 12222 2222 1112233334444456778777754 4555668
Q ss_pred cCCccC-CCCCChHHHHHHHHHHHHHHHHhhh
Q 010067 146 VDHKPL-FDGRTAIEIYSDYMKSFRKNMFDFL 176 (519)
Q Consensus 146 ~D~~pv-l~GRTpi~~Y~dfm~sF~~~f~~~l 176 (519)
+|.+.+ .+.+++ +.-.+-.+.+++.+....
T Consensus 170 v~~~rI~~r~~~~-~~~~~iv~~Y~~~l~~~~ 200 (233)
T PF01136_consen 170 VDSFRIDGRTESP-EYIEEIVKAYREALDNPE 200 (233)
T ss_pred CCEEEEcCccCCH-HHHHHHHHHHHHHHHHHH
Confidence 888776 455563 333455666666666544
No 199
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=28.66 E-value=1.5e+02 Score=31.68 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=49.4
Q ss_pred eeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchh-----HHHHHHHHHHcCCcEEEEEeee
Q 010067 29 VITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSA-----YRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 29 ~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~-----Y~~l~~mv~~~GLKv~~imsfH 100 (519)
+|.--|.+++++++..--+.||++|.+.+...+| +..-.-|.|.+ ++-|.+.+++.||.+ +-..|
T Consensus 96 ~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v--~tev~ 165 (335)
T PRK08673 96 VIAGPCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPI--VTEVM 165 (335)
T ss_pred EEEecCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcE--EEeeC
Confidence 3444578899999999999999999997776666 22333355555 999999999999999 55554
No 200
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=28.62 E-value=1.6e+02 Score=31.35 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=63.4
Q ss_pred ceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 010067 28 GVITNDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVG 107 (519)
Q Consensus 28 d~v~~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVG 107 (519)
.+|...+.....+.+++.+++|+..|.+.|--..=+...+.-+.- +=+--.+|-++..+-..|+ |||.= | |
T Consensus 14 ~iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s--~~~R~~dL~~af~d~~vk~--Il~~r--G---G 84 (313)
T COG1619 14 GIIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGS--DEERAEDLMSAFSDPDVKA--ILCVR--G---G 84 (313)
T ss_pred EEEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCC--HHHHHHHHHHHhcCCCCeE--EEEcc--c---C
Confidence 344444455578889999999999998887766555443321100 0122445666777777777 99993 4 3
Q ss_pred CcccccCChhhhhhhccCCCeee
Q 010067 108 DVVTIPIPKWVLEIGETNPDIFY 130 (519)
Q Consensus 108 D~~~IpLP~WV~~~g~~~PDi~y 130 (519)
..++=-||.|-.+..+++|-||+
T Consensus 85 ygs~rlLp~ld~~~i~~~pKifi 107 (313)
T COG1619 85 YGSNRLLPYLDYDLIRNHPKIFI 107 (313)
T ss_pred CChhhhhhhcchHHHhcCCceEE
Confidence 45666699999888899998884
No 201
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=28.34 E-value=1.1e+02 Score=29.26 Aligned_cols=45 Identities=24% Similarity=0.462 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcC
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYE 90 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~G 90 (519)
+++++++.++.||..||+.|-|--=|+.+-+. .=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 57899999999999999999998888877662 3356777777765
No 202
>PTZ00445 p36-lilke protein; Provisional
Probab=28.12 E-value=1.4e+02 Score=30.39 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=46.1
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccch------------hHHHHHHHHHHcCCcE
Q 010067 34 NVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWS------------AYRSLFELIQQYELKL 93 (519)
Q Consensus 34 ~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs------------~Y~~l~~mv~~~GLKv 93 (519)
+.++..+....=.+.||+.||..|-+|.==-+|...+.|..++. ..+++++.++++|++|
T Consensus 23 ~~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v 94 (219)
T PTZ00445 23 DHLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKI 94 (219)
T ss_pred ccCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeE
Confidence 35566677777778899999999999975556665555555553 4788999999999999
No 203
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=28.00 E-value=1.7e+02 Score=35.02 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc-------------cchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY-------------DWSAYRSLFELIQQYELKLQAIMSFHQCG 103 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~imsfHqCG 103 (519)
+.+.+.|..|+++||+.|-+.=-+-.... +..-| ....++++++.++++||+|..=+-+--++
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~g-s~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPG-STHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCC-CCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 67889999999999999977654432211 22233 36779999999999999996555554444
No 204
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=27.90 E-value=2e+02 Score=29.16 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchhHHHHHHHHHH-cCCcEEEEEeeeccCC
Q 010067 41 KLESQLKELKAAGVDGIMVDVW-WGIIESKGPRQYDWSAYRSLFELIQQ-YELKLQAIMSFHQCGG 104 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~-~GLKv~~imsfHqCGG 104 (519)
.....+++|+++|++.|.+|.= |+..-. + ..++....+++.+.+.+ .|-+ ...|-||+
T Consensus 152 ~~~~~~~~l~~~G~~~iqidEP~l~~~~~-s-~~~~~~~~~~~~~~~~~~~~~~----~~lHic~~ 211 (321)
T cd03310 152 FLREQVKELKNRGIVVVQIDEPSLGAVGA-G-AFEDLEIVDAALEEVSLKSGGD----VEVHLCAP 211 (321)
T ss_pred HHHHHHHHHHhcCCcEEEeCCCccccccc-c-ccchHHHHHHHHHHHhhccCCc----eEEEECCC
Confidence 5667888999999999999874 654432 2 35778888888888876 3333 24688987
No 205
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=27.90 E-value=67 Score=32.95 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=34.3
Q ss_pred HHHHHHcCcceEEEeeeeeeeccCCCc---cccchhHHHHHHHHHHcCCcE
Q 010067 46 LKELKAAGVDGIMVDVWWGIIESKGPR---QYDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 46 L~~LK~~GVdgV~vdVWWGiVE~~~p~---~YdWs~Y~~l~~mv~~~GLKv 93 (519)
+..++++|++|||+|-+ .+.+.. .+++....+.++.+|++||+.
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 45678999999999976 333333 456677888899999999998
No 206
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=27.81 E-value=2.2e+02 Score=26.86 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=47.7
Q ss_pred EEecceeecccCCCchh-hh---hhcccCCCCCCChHHHHHHHhhcCcEEEEeeccccCCCCC---CcCCCChHHHHHHH
Q 010067 301 AKVSGIHWWYLADNHAA-EL---TAGYYNLNDRDGYRPIARILSRHYGILNFTCLEMRNSEQD---AAAKCGPQELVQQV 373 (519)
Q Consensus 301 aKv~GIHWwy~t~SHaA-El---TAGyYN~~~rdGY~~Ia~m~~rh~~~l~fTclEM~d~e~~---~~~~s~Pe~Lv~Qv 373 (519)
+++.|+||+|....... .. .-|+ .....-|.++++.|++. ++..+++++....+ .....+-+.+++.+
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~vv~~hG~--~~~~~~~~~~~~~l~~~---~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l 85 (278)
T TIGR03056 11 VTVGPFHWHVQDMGPTAGPLLLLLHGT--GASTHSWRDLMPPLARS---FRVVAPDLPGHGFTRAPFRFRFTLPSMAEDL 85 (278)
T ss_pred eeECCEEEEEEecCCCCCCeEEEEcCC--CCCHHHHHHHHHHHhhC---cEEEeecCCCCCCCCCccccCCCHHHHHHHH
Confidence 37899999998654321 11 1132 22334588999999874 56667788754432 22134667888888
Q ss_pred HHHhhhcCC
Q 010067 374 LSGGWRENI 382 (519)
Q Consensus 374 ~~aa~~~Gv 382 (519)
.+.....++
T Consensus 86 ~~~i~~~~~ 94 (278)
T TIGR03056 86 SALCAAEGL 94 (278)
T ss_pred HHHHHHcCC
Confidence 877766553
No 207
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.69 E-value=1.7e+02 Score=29.90 Aligned_cols=81 Identities=11% Similarity=0.208 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChh
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKW 117 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~W 117 (519)
+.+..+.++++..+.|++.|.+-+-.. |.+--.+.++.+++.|+++++-+++= .+ ...-|..
T Consensus 89 p~~~~~~di~~~~~~g~~~iri~~~~~----------~~~~~~~~i~~ak~~G~~v~~~i~~~--~~------~~~~~~~ 150 (275)
T cd07937 89 PDDVVELFVEKAAKNGIDIFRIFDALN----------DVRNLEVAIKAVKKAGKHVEGAICYT--GS------PVHTLEY 150 (275)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEeecCC----------hHHHHHHHHHHHHHCCCeEEEEEEec--CC------CCCCHHH
Confidence 334578899999999999988855322 25667889999999999997655541 11 2234566
Q ss_pred hhhh----hccCCC-eeeecCCCC
Q 010067 118 VLEI----GETNPD-IFYTNRSGN 136 (519)
Q Consensus 118 V~~~----g~~~PD-i~ytD~~G~ 136 (519)
+.+. .+.-+| |.+.|-.|.
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~ 174 (275)
T cd07937 151 YVKLAKELEDMGADSICIKDMAGL 174 (275)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCC
Confidence 6653 222233 556666665
No 208
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=27.66 E-value=74 Score=34.10 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEE
Q 010067 42 LESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQ 94 (519)
Q Consensus 42 ~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 94 (519)
+.+.|+.+++.|+++|..+. |.++-....+ .. -..++++.++++||+|+
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~-~~l~~~~~~~--~~-~~~~~v~~Ah~~GL~V~ 295 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPI-WMLVDPDENG--KI-VPSEYAKAAKAAGLDII 295 (356)
T ss_pred HHHHHHHHHhCCccEecCch-hhcccccccc--cc-CCHHHHHHHHHcCCEEE
Confidence 55779999999999866543 3333322222 22 56789999999999993
No 209
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.54 E-value=1.8e+02 Score=22.77 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEE
Q 010067 42 LESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQ 94 (519)
Q Consensus 42 ~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 94 (519)
++.-++++|+.|++.|-+ .+-. +..++.++.+.+++.|+++.
T Consensus 17 ~~~~~~~a~~~g~~~v~i------TDh~-----~~~~~~~~~~~~~~~gi~~i 58 (67)
T smart00481 17 PEELVKRAKELGLKAIAI------TDHG-----NLFGAVEFYKAAKKAGIKPI 58 (67)
T ss_pred HHHHHHHHHHcCCCEEEE------eeCC-----cccCHHHHHHHHHHcCCeEE
Confidence 577889999999999965 3321 56678889999999999883
No 210
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=27.48 E-value=53 Score=39.23 Aligned_cols=49 Identities=33% Similarity=0.649 Sum_probs=38.3
Q ss_pred cceEEEeeeeeeeccCCCccc---cchhHH---HHHHHHHHcCCcEEEEEeeeccCCCCCCc
Q 010067 54 VDGIMVDVWWGIIESKGPRQY---DWSAYR---SLFELIQQYELKLQAIMSFHQCGGNVGDV 109 (519)
Q Consensus 54 VdgV~vdVWWGiVE~~~p~~Y---dWs~Y~---~l~~mv~~~GLKv~~imsfHqCGGNVGD~ 109 (519)
+.-||+. .--+..++-| +|.-|+ +|+++++++|.+++ =||.-||.||--
T Consensus 558 ~QEVMlG----YSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr---lFHGRGGtVGRG 612 (910)
T COG2352 558 VQEVMLG----YSDSNKDGGYLAANWALYKAQLALVELCEKAGVELR---LFHGRGGSVGRG 612 (910)
T ss_pred ceEEEec----ccccccccchhhhHHHHHHHHHHHHHHHHHhCceEE---EEccCCCCCCCC
Confidence 7788884 4444555555 798886 58999999999984 499999999973
No 211
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.82 E-value=1.2e+02 Score=30.01 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccc--hhHHHHHHHHHHcCCcEEEEEeee
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDW--SAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdW--s~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
+.++.-++..+.+|++.|.+.-+-...++..+..+++ ...+++.+++++.|+++ .+-+|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l--~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML--AVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE--EEEec
Confidence 4567888889999999998631100011111111111 35788999999999988 77776
No 212
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=26.81 E-value=58 Score=33.25 Aligned_cols=58 Identities=19% Similarity=0.372 Sum_probs=37.0
Q ss_pred CCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc---cch---hHHHHHHHHHHcCCc
Q 010067 32 NDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY---DWS---AYRSLFELIQQYELK 92 (519)
Q Consensus 32 ~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y---dWs---~Y~~l~~mv~~~GLK 92 (519)
.++++..+..++.-.++|+ .|+..|++|||=|- ...|-.| .+. -++++++.|+++..+
T Consensus 22 ~g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg~--dgePvV~Hg~tlts~i~f~dv~~~I~~~AF~ 85 (229)
T cd08627 22 TGDQFSSESSLEAYARCLR-MGCRCIELDCWDGP--DGMPVIYHGHTLTTKIKFSDVLHTIKEHAFV 85 (229)
T ss_pred cCCccCCcccHHHHHHHHH-hCCCEEEEEeecCC--CCCEEEEeCCcCCCceEHHHHHHHHHHhhcc
Confidence 3577777788887777777 99999999999551 0011111 111 256667777766554
No 213
>PRK02227 hypothetical protein; Provisional
Probab=26.04 E-value=74 Score=32.66 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=36.2
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCC---ccccchhHHHHHHHHHHcCCcE
Q 010067 44 SQLKELKAAGVDGIMVDVWWGIIESKGP---RQYDWSAYRSLFELIQQYELKL 93 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~vdVWWGiVE~~~p---~~YdWs~Y~~l~~mv~~~GLKv 93 (519)
.-+..++++|++|+|+|-+ ++.+- ..+++....+.++++|++||+.
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 4567789999999999965 33332 3467788889999999999998
No 214
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.81 E-value=2.1e+02 Score=29.53 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 33 DNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 33 ~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
=+.++.++++..--+.+|++|+.-+.-..|==..-+.+-+-....+++.|.+.+++.||.+ +-..|
T Consensus 22 PC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~--~Tev~ 87 (250)
T PRK13397 22 PCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLS--VSEIM 87 (250)
T ss_pred cCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 4778889988888889999999999998884111111111123468999999999999998 54554
No 215
>PRK05926 hypothetical protein; Provisional
Probab=25.59 E-value=68 Score=34.45 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCcceEEEeee----eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 42 LESQLKELKAAGVDGIMVDVW----WGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 42 ~~~~L~~LK~~GVdgV~vdVW----WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
.+..|++||++|++-+...-+ .-+-+.-.|+.-....+.+..+.++++||++-.-|=|
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~ 229 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLC 229 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEE
Confidence 367799999999987764301 1112212366667777899999999999999554444
No 216
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=25.44 E-value=3.1e+02 Score=27.49 Aligned_cols=82 Identities=13% Similarity=0.234 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccc------cchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCCh
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQY------DWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPK 116 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y------dWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~ 116 (519)
.++++..++.|++.|.+-+-.. |.....++ -+....++++.+++.|++++ +++ -|.... -|.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~-------~~~~~~-~~~ 139 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVS--DIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGA-------EDASRA-DPD 139 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--Eee-------ccCCCC-CHH
Confidence 4567788899999988877322 21111122 35678899999999999774 333 233333 356
Q ss_pred hhhhhhc----cCCC-eeeecCCCC
Q 010067 117 WVLEIGE----TNPD-IFYTNRSGN 136 (519)
Q Consensus 117 WV~~~g~----~~PD-i~ytD~~G~ 136 (519)
.+.+..+ .-+| |.+.|-.|.
T Consensus 140 ~~~~~~~~~~~~G~~~i~l~DT~G~ 164 (259)
T cd07939 140 FLIEFAEVAQEAGADRLRFADTVGI 164 (259)
T ss_pred HHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 6555322 2233 667777775
No 217
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=25.35 E-value=3.5e+02 Score=27.07 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcc--cccCC
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVV--TIPIP 115 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~--~IpLP 115 (519)
....+.+.|+...+.|++-|.+- ||.-.+ ......-+.++++++.+.+.|.=| |.|- ||-|... .+|.|
T Consensus 87 ~~~~i~~Ai~~Ai~~gadIIn~S--~g~~~~-~~~~~~~~~l~~ai~~A~~~Gilv--vaaA----GN~g~~~~~~~~~p 157 (247)
T cd07491 87 TPQSAAKAIEAAVEKKVDIISMS--WTIKKP-EDNDNDINELENAIKEALDRGILL--FCSA----SDQGAFTGDTYPPP 157 (247)
T ss_pred CHHHHHHHHHHHHHCCCcEEEee--eecccc-cccccchHHHHHHHHHHHhCCeEE--EEec----CCCCCcCCCcccCc
Confidence 56778889999999999988877 665332 111223567888888888877444 5554 6666544 45566
Q ss_pred hh
Q 010067 116 KW 117 (519)
Q Consensus 116 ~W 117 (519)
.+
T Consensus 158 a~ 159 (247)
T cd07491 158 AA 159 (247)
T ss_pred cc
Confidence 54
No 218
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=25.30 E-value=1.7e+02 Score=27.92 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 42 LESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 42 ~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
.++-++.++++|++.|.+--+. +..++.+.+++++.+ ++.+.+.+|
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~~------------~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGTD------------LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecCC------------HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 4667788899999988733211 245678889999999 998888887
No 219
>PRK08508 biotin synthase; Provisional
Probab=25.20 E-value=2.3e+02 Score=28.93 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=38.5
Q ss_pred cCHHHHHHHHHHHHHcCcceEEE-eeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 010067 37 EDKDKLESQLKELKAAGVDGIMV-DVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQA 95 (519)
Q Consensus 37 ~~~~~~~~~L~~LK~~GVdgV~v-dVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 95 (519)
..++++.+..+.+++.|+..+.+ +-+ .+....++.+|.++++.+++.++++.+
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg------~~~~~~~~e~~~ei~~~ik~~~p~l~i 93 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSG------RGLDDKKLEYVAEAAKAVKKEVPGLHL 93 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecc------CCCCcccHHHHHHHHHHHHhhCCCcEE
Confidence 46677788888889999988865 211 112234788999999999998876643
No 220
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=25.10 E-value=3.3e+02 Score=35.35 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc-------------chhHHHHHHHHHHcCCcEEEEEeeeccC
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYD-------------WSAYRSLFELIQQYELKLQAIMSFHQCG 103 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd-------------Ws~Y~~l~~mv~~~GLKv~~imsfHqCG 103 (519)
.-+.+.+.|-.||++||+.|-+.-.+--... +..-|| ...+++|++.++++||+|..=+-+.-+|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~g-s~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPG-STHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCC-CCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 3478899999999999999988765532211 222333 4467899999999999995555554343
No 221
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=25.08 E-value=2.1e+02 Score=26.94 Aligned_cols=80 Identities=11% Similarity=0.183 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeeeccccccCChhHHHHHHHHhCCCCCCC
Q 010067 333 RPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQILLNARPNGVNK 412 (519)
Q Consensus 333 ~~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~g~~~ 412 (519)
..+.++++++|..+..-.++-.|-.. .+|+.+++++++..+.-.|-+.=-|.-.....++..+|+...+.+
T Consensus 110 ~~~~~~l~~~G~~~v~w~~~~~D~~~-----~~~~~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~---- 180 (191)
T TIGR02764 110 KAVLKAAESLGYTVVHWSVDSRDWKN-----PGVESIVDRVVKNTKPGDIILLHASDSAKQTVKALPTIIKKLKEK---- 180 (191)
T ss_pred HHHHHHHHHcCCeEEEecCCCCccCC-----CCHHHHHHHHHhcCCCCCEEEEeCCCCcHhHHHHHHHHHHHHHHC----
Confidence 45688899999888777776666542 468999999988876544544331111112345777787776543
Q ss_pred CCCCCCCcceeEEecccc
Q 010067 413 EGPPKLRMYGVTYLRLSD 430 (519)
Q Consensus 413 ~g~~~~~~~~FTylRm~~ 430 (519)
||++..+.+
T Consensus 181 ---------Gy~~vtl~~ 189 (191)
T TIGR02764 181 ---------GYEFVTISE 189 (191)
T ss_pred ---------CCEEEEHHH
Confidence 467776655
No 222
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=25.00 E-value=1.9e+02 Score=29.93 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=46.5
Q ss_pred HHHHHHHHH---HcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC------Ccccc
Q 010067 42 LESQLKELK---AAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVG------DVVTI 112 (519)
Q Consensus 42 ~~~~L~~LK---~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVG------D~~~I 112 (519)
++.++++|| ++|++.+..-. -||-+.|.+..+.+++.|+++-+|-+.=-+.. .. .-|.|
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~-----------~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~s-~~~~~~~~~~~Gi 214 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQL-----------FYDVDNFLKFVNDCRAIGIDCPIVPGIMPINN-YASFLRRAKWSKT 214 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccc-----------eecHHHHHHHHHHHHHcCCCCCEEeeccccCC-HHHHHHHHhcCCC
Confidence 445566665 59999876533 57889999999999999888755443321110 11 12557
Q ss_pred cCChhhhhhhc
Q 010067 113 PIPKWVLEIGE 123 (519)
Q Consensus 113 pLP~WV~~~g~ 123 (519)
.+|.||.+.-+
T Consensus 215 ~vP~~l~~~l~ 225 (281)
T TIGR00677 215 KIPQEIMSRLE 225 (281)
T ss_pred CCCHHHHHHHH
Confidence 89999997544
No 223
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=24.90 E-value=1.7e+02 Score=30.38 Aligned_cols=67 Identities=22% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCCccEEEeeccceeeCCCcccCHHHHHHHHHHHH----HcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcC
Q 010067 16 PNYVPIYVMLPLGVITNDNVLEDKDKLESQLKELK----AAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYE 90 (519)
Q Consensus 16 ~~~vpv~VMlPLd~v~~~~~~~~~~~~~~~L~~LK----~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~G 90 (519)
+.+.+.-||-||.--+--++..+++.+...||+|| +.|+. |+|||-|=..-.-..=-+.++.|+++|
T Consensus 94 acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~--------GLVEPLGF~~csLRsk~eA~~aI~aa~ 164 (272)
T COG4130 94 ACGAKALVLCPLNDGSWPGTAVRREDLVEALKALKPILDEYGIT--------GLVEPLGFRVCSLRSKAEAAEAIRAAG 164 (272)
T ss_pred hcCCceEEEEeccCCCCCCcccchHHHHHHHHHhhHHHHHhCcc--------ccccccCchhhhhhhHHHHHHHHHHhC
No 224
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=24.86 E-value=1.1e+02 Score=31.19 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=38.3
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHH----HHHcCCcEEEEEee
Q 010067 44 SQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFEL----IQQYELKLQAIMSF 99 (519)
Q Consensus 44 ~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~m----v~~~GLKv~~imsf 99 (519)
-+-..||++|+++|.+. +++++=.+.-=++++.. +.++||+. |+|.
T Consensus 77 vS~~mLkd~G~~~viiG--------HSERR~~f~Etd~~v~~K~~~a~~~gl~p--IvCi 126 (250)
T PRK00042 77 ISAEMLKDLGVKYVIIG--------HSERRQYFGETDELVNKKVKAALKAGLTP--ILCV 126 (250)
T ss_pred cCHHHHHHCCCCEEEeC--------cccccCccCcCHHHHHHHHHHHHHCCCEE--EEEc
Confidence 35778999999999996 56777777777888877 99999998 8887
No 225
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=24.86 E-value=68 Score=31.11 Aligned_cols=40 Identities=45% Similarity=0.838 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHc--CCcEEEEEee
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQY--ELKLQAIMSF 99 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~--GLKv~~imsf 99 (519)
+++++.|+.|+++||+||+|.- + .++.++++. +++| +.++
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~---------~---------g~~~~~k~~~~~~~i--~~~~ 43 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN---------P---------GLLELLKELGPDLKI--IADY 43 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC---------H---------HHHHHHHHhCCCCcE--EEec
Confidence 4689999999999999999862 2 367889999 6666 5444
No 226
>PLN02784 alpha-amylase
Probab=24.67 E-value=1.5e+02 Score=35.90 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccc-------------hhHHHHHHHHHHcCCcEEEEEee-eccCC
Q 010067 39 KDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDW-------------SAYRSLFELIQQYELKLQAIMSF-HQCGG 104 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdW-------------s~Y~~l~~mv~~~GLKv~~imsf-HqCGG 104 (519)
-..|...|..|+++||++|-+.-= .+..++.-|+- ..+++|++.++++|+||.+=+-+ |.||.
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~---~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~ 596 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPP---TESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAH 596 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCC---CCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 578899999999999999988763 23333334432 35889999999999999554444 77764
No 227
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=24.63 E-value=1.6e+02 Score=30.94 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCC-------ccccchhHHHHHHHHHHcCCc-EEEEEee
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGP-------RQYDWSAYRSLFELIQQYELK-LQAIMSF 99 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLK-v~~imsf 99 (519)
+..|+.||++||+.|.+. ||...| ...++.-+.+.+++++++|++ |.+-|-+
T Consensus 100 ~e~l~~l~~~Gv~risiG-----vqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~ 159 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG-----VQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMY 159 (360)
T ss_pred HHHHHHHHHcCCCEEEEe-----cccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccC
No 228
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.58 E-value=71 Score=29.19 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeee-eeecc---CCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 39 KDKLESQLKELKAAGVDGIMVDVWW-GIIES---KGPRQYDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GVdgV~vdVWW-GiVE~---~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
.+.++..++..+.+|+..|.+...+ ..-.. +..-..--..++++.+++++.|+++ .+-.|
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i--~lE~~ 133 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI--ALENH 133 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE--EEE-S
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE--EEecc
Confidence 4688889999999999999888552 11111 0111222346788999999999665 55554
No 229
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=24.19 E-value=79 Score=26.73 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=27.7
Q ss_pred eeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeeec
Q 010067 349 TCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAGE 387 (519)
Q Consensus 349 TclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GE 387 (519)
+|||..-+..+ ..++.|-.++...+++.||.++=|
T Consensus 49 ~~~e~~v~~~~----~~~~~lr~~L~~la~elgvDIavQ 83 (84)
T cd04871 49 ACVEFSVRGQP----ADLEALRAALLELASELNVDIAFQ 83 (84)
T ss_pred EEEEEEEeCCC----CCHHHHHHHHHHHhcccCceEEEe
Confidence 48887765322 588999999999999999998743
No 230
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=24.12 E-value=2e+02 Score=27.43 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=39.6
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeecc
Q 010067 45 QLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQC 102 (519)
Q Consensus 45 ~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqC 102 (519)
++.+||+.||++|.+=+.-| - .|.=..|.+-.+-|+++||++-+..=++.|
T Consensus 16 d~~~vk~~gi~fviiKateG------~-~~~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~ 66 (191)
T cd06413 16 DWARVRAQGVSFAYIKATEG------G-DHVDKRFAENWRGARAAGLPRGAYHFFTFC 66 (191)
T ss_pred CHHHHHhCCCcEEEEEEcCC------C-CccCHHHHHHHHHHHHcCCceEEEEEEecC
Confidence 68899999999999997533 2 244467888889999999999777666543
No 231
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=24.04 E-value=1.5e+02 Score=32.09 Aligned_cols=59 Identities=15% Similarity=0.314 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCcceEEEeeeee-eeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 010067 43 ESQLKELKAAGVDGIMVDVWWG-IIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGG 104 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWG-iVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGG 104 (519)
..-|++.-++|+|.|.+.--|+ .+......+|...+-.++++-+++.+-. .+|+-| |+|
T Consensus 192 i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~-~pii~f--~~g 251 (352)
T COG0407 192 IEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGG-VPVIHF--CKG 251 (352)
T ss_pred HHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCC-CcEEEE--CCC
Confidence 3456677789999999877665 4444568899999999999999987776 356655 877
No 232
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.92 E-value=97 Score=31.71 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=39.5
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeee-eeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 010067 35 VLEDKDKLESQLKELKAAGVDGIMVDVWW-GIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGD 108 (519)
Q Consensus 35 ~~~~~~~~~~~L~~LK~~GVdgV~vdVWW-GiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD 108 (519)
.+.....++ +.+++-++|+|.+|+=| |-+. ...+++++|+++|+++ +++.| |.+++|=
T Consensus 236 ~~~~~~~~~---~~~~~~~~d~v~~~~~~~GGi~----------~~~~~~~~a~~~gi~~--~~~~~-~~~~i~~ 294 (316)
T cd03319 236 SCFSAADAA---RLAGGGAYDGINIKLMKTGGLT----------EALRIADLARAAGLKV--MVGCM-VESSLSI 294 (316)
T ss_pred CCCCHHHHH---HHHhcCCCCEEEEeccccCCHH----------HHHHHHHHHHHcCCCE--EEECc-hhhHHHH
Confidence 344444433 45677899999999874 4333 3589999999999999 66555 3555543
No 233
>PRK03705 glycogen debranching enzyme; Provisional
Probab=23.75 E-value=99 Score=35.87 Aligned_cols=54 Identities=19% Similarity=0.471 Sum_probs=36.7
Q ss_pred HHHHHHHcCcceEEEe-e----------------eeee-------eccCCCccccc------hhHHHHHHHHHHcCCcEE
Q 010067 45 QLKELKAAGVDGIMVD-V----------------WWGI-------IESKGPRQYDW------SAYRSLFELIQQYELKLQ 94 (519)
Q Consensus 45 ~L~~LK~~GVdgV~vd-V----------------WWGi-------VE~~~p~~YdW------s~Y~~l~~mv~~~GLKv~ 94 (519)
.|..||++||+.|.+- | .||. +|+ .|-= ..++++++-+++.||||.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~----~ygt~~~~~~~efk~LV~~~H~~GI~VI 259 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDP----AYASGPETALDEFRDAVKALHKAGIEVI 259 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccc----ccCCCCcchHHHHHHHHHHHHHCCCEEE
Confidence 4889999999999762 2 2442 222 1211 258999999999999996
Q ss_pred EEEee-ecc
Q 010067 95 AIMSF-HQC 102 (519)
Q Consensus 95 ~imsf-HqC 102 (519)
.=+-| |-+
T Consensus 260 lDvV~NHt~ 268 (658)
T PRK03705 260 LDVVFNHSA 268 (658)
T ss_pred EEEcccCcc
Confidence 55555 433
No 234
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.68 E-value=1.2e+02 Score=31.33 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=39.3
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCccccchhHH----HHHHHHHHcCCcEEEEEee
Q 010067 45 QLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYR----SLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 45 ~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~----~l~~mv~~~GLKv~~imsf 99 (519)
+-..||++|+++|.|. +++++-.+.-=+ +-++.++++||+. |+|.
T Consensus 80 S~~mL~d~G~~~viiG--------HSERR~~~~E~d~~i~~K~~aa~~~Gl~p--IlCv 128 (251)
T COG0149 80 SAEMLKDLGAKYVLIG--------HSERRLYFGETDELIAKKVKAAKEAGLTP--ILCV 128 (251)
T ss_pred CHHHHHHcCCCEEEEC--------ccccccccccchHHHHHHHHHHHHCCCeE--EEEc
Confidence 5678999999999996 788888888888 7788999999997 8887
No 235
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=23.59 E-value=18 Score=30.19 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCcEEEEEee
Q 010067 79 YRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 79 Y~~l~~mv~~~GLKv~~imsf 99 (519)
-+++++.|++.|+||.|+=||
T Consensus 44 ~~~~l~~a~~~~~kv~p~C~y 64 (78)
T PF14542_consen 44 VEAALDYARENGLKVVPTCSY 64 (78)
T ss_dssp HHHHHHHHHHTT-EEEETSHH
T ss_pred HHHHHHHHHHCCCEEEEECHH
Confidence 468899999999999887666
No 236
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=23.34 E-value=1.9e+02 Score=26.49 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=38.7
Q ss_pred CChHHHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCee
Q 010067 330 DGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEV 384 (519)
Q Consensus 330 dGY~~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~ 384 (519)
-|+..+.+.+++..+.|.|-+- .++|.+++..+...|+++||++
T Consensus 33 ~G~~~v~kaikkgkakLVilA~-----------D~s~~~i~~~~~~lc~~~~Vp~ 76 (122)
T PRK04175 33 KGTNETTKAVERGIAKLVVIAE-----------DVDPEEIVAHLPLLCEEKKIPY 76 (122)
T ss_pred EcHHHHHHHHHcCCccEEEEeC-----------CCChHHHHHHHHHHHHHcCCCE
Confidence 4799999999999999999872 3778888999999999999996
No 237
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=23.20 E-value=1.9e+02 Score=31.47 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCC-------ccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGP-------RQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
+..|+.||++|+..|.+.+ |...+ +..+.+.+.+.++.++++|+.+.+-+=+
T Consensus 287 ~e~l~~l~~aG~~~v~iGi-----ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~Ii 345 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGY-----ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFIL 345 (472)
T ss_pred HHHHHHHHHcCCCEEEEcC-----CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 3567889999999887764 54322 2456778889999999999987544443
No 238
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=23.13 E-value=74 Score=32.44 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=36.5
Q ss_pred CCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc-cc-----hhHHHHHHHHHHcCCc
Q 010067 32 NDNVLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY-DW-----SAYRSLFELIQQYELK 92 (519)
Q Consensus 32 ~~~~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y-dW-----s~Y~~l~~mv~~~GLK 92 (519)
.++++..+..+++-.++|+ .|+..|++|||=|- ...|-.+ ++ =..+++++.|+++..+
T Consensus 22 ~g~Ql~~ess~eay~~AL~-~GcR~vElDvwdg~--dgePvV~HG~tlts~i~f~dv~~~I~~~aF~ 85 (229)
T cd08592 22 TGDQLSSESSLEAYARCLR-MGCRCIELDCWDGP--DGMPIIYHGHTLTSKIKFMDVLKTIKEHAFV 85 (229)
T ss_pred cCCccCCccCHHHHHHHHH-hCCCEEEEEeecCC--CCCEEEEeCCcCCCCcCHHHHHHHHHHHhcc
Confidence 3567777777776666666 99999999999541 1112222 11 2356677777776543
No 239
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=23.10 E-value=50 Score=35.62 Aligned_cols=51 Identities=27% Similarity=0.321 Sum_probs=34.0
Q ss_pred HHHHHHHc-CcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 45 QLKELKAA-GVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 45 ~L~~LK~~-GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
.|..+++. ||+||.....+--. ...++-...+++-+.|+++||++.||=|.
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p~----g~~W~~e~i~~~k~~ie~~GL~~~vIEsv 67 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIPN----GEVWDYEEIRALKERIEAAGLTLSVIESV 67 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-T----TS---HHHHHHHHHHHHCTT-EEEEEES-
T ss_pred hHHHHHHhcCCCCeeeCCCCCCC----CCCCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 57788886 99999988865222 23566677889999999999999988665
No 240
>PRK12568 glycogen branching enzyme; Provisional
Probab=23.09 E-value=2e+02 Score=34.00 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=38.4
Q ss_pred CHHHHHHH-HHHHHHcCcceEEEeeeeeeeccCCCccccc-----------------hhHHHHHHHHHHcCCcEEEEEee
Q 010067 38 DKDKLESQ-LKELKAAGVDGIMVDVWWGIIESKGPRQYDW-----------------SAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 38 ~~~~~~~~-L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdW-----------------s~Y~~l~~mv~~~GLKv~~imsf 99 (519)
+-+.+... |..||++||+.|.+-= +.|. |....| ..++++++.++++||+|..=+-+
T Consensus 267 ~~~~la~~ll~ylk~LGvt~I~LmP---i~e~--~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 267 DWPTLAEQLIPYVQQLGFTHIELLP---ITEH--PFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECc---cccC--CCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45666666 5999999999997632 1221 212223 35899999999999999443333
No 241
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=23.07 E-value=1.5e+02 Score=29.49 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc--chhHHHHHHHHHHcCCcEEEEEeee
Q 010067 41 KLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYD--WSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 41 ~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Yd--Ws~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
.+++.++..+.+|+..|.+.-....-+...+..++ -+.++++++++++.|+++ .|-.|
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l--~lE~~ 154 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTL--AVEIM 154 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEE--EEeeC
Confidence 57888899999999988653210001111111122 245678999999999988 66655
No 242
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=22.97 E-value=6.7e+02 Score=25.75 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHH------------------HHHHHHHHcCCcEEEEEee
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYR------------------SLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~------------------~l~~mv~~~GLKv~~imsf 99 (519)
+++.+...++.+++.|+++|.+.+--- +++ .+..|...+ +.+..+.++|.+. +..
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p-~~~---~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~---I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTP-VLG---RRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADG---IVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC-CCC---CCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCE---EEE
Confidence 567777888999999999998866311 111 113343222 2233344555554 334
Q ss_pred eccCCCCCCcccccCChhhhhhhccC-CCeeeecCCCCcc----ccccccccCCccCCCCCChH--------HHHHHHHH
Q 010067 100 HQCGGNVGDVVTIPIPKWVLEIGETN-PDIFYTNRSGNRN----KEYLTIGVDHKPLFDGRTAI--------EIYSDYMK 166 (519)
Q Consensus 100 HqCGGNVGD~~~IpLP~WV~~~g~~~-PDi~ytD~~G~rn----~E~lSlg~D~~pvl~GRTpi--------~~Y~dfm~ 166 (519)
|.+||-..| ..++....+.++.+.- +++-..=.-|-++ .++|.+|+|-+=+ ||.-+ +--.++++
T Consensus 200 ~~~gG~~~~-~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~i--g~~~l~~~~~~g~~~v~~~i~ 276 (299)
T cd02809 200 SNHGGRQLD-GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI--GRPFLYGLAAGGEAGVAHVLE 276 (299)
T ss_pred cCCCCCCCC-CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE--cHHHHHHHHhcCHHHHHHHHH
Confidence 455665444 2233334455543332 2455555566666 7899999997433 44322 22246777
Q ss_pred HHHHHHHhhh
Q 010067 167 SFRKNMFDFL 176 (519)
Q Consensus 167 sF~~~f~~~l 176 (519)
.+++++...+
T Consensus 277 ~l~~el~~~m 286 (299)
T cd02809 277 ILRDELERAM 286 (299)
T ss_pred HHHHHHHHHH
Confidence 7777777755
No 243
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=22.83 E-value=2.1e+02 Score=28.74 Aligned_cols=71 Identities=18% Similarity=0.352 Sum_probs=51.0
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccc--c-----chhHHHHHHHHHHcCCcEEEEEeeeccCCCC
Q 010067 36 LEDKDKLESQLKELKAAG--VDGIMVDVWWGIIESKGPRQY--D-----WSAYRSLFELIQQYELKLQAIMSFHQCGGNV 106 (519)
Q Consensus 36 ~~~~~~~~~~L~~LK~~G--VdgV~vdVWWGiVE~~~p~~Y--d-----Ws~Y~~l~~mv~~~GLKv~~imsfHqCGGNV 106 (519)
-.+.+.+..-.+.+++.| +|.|.+|.+|..- -+.+ + |.--+++++-+++.|+|+ ++..|
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~--~~~~~------ 87 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----YGDFTFDWDAGKFPNPKSMIDELHDNGVKL--VLWID------ 87 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECcccccC----CceeeeecChhhCCCHHHHHHHHHHCCCEE--EEEeC------
Confidence 357788888888998854 6899999999732 2333 3 445689999999999999 66554
Q ss_pred CCcccccCChhhhhhhc
Q 010067 107 GDVVTIPIPKWVLEIGE 123 (519)
Q Consensus 107 GD~~~IpLP~WV~~~g~ 123 (519)
+.| -.|..+.-+
T Consensus 88 ---P~v--~~w~~~~~~ 99 (265)
T cd06589 88 ---PYI--REWWAEVVK 99 (265)
T ss_pred ---hhH--HHHHHHHHH
Confidence 333 667776433
No 244
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=22.80 E-value=1.7e+02 Score=30.85 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeee--eeeeccCCCccccchhHHHHHHHHHHcCC
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVW--WGIIESKGPRQYDWSAYRSLFELIQQYEL 91 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVW--WGiVE~~~p~~YdWs~Y~~l~~mv~~~GL 91 (519)
+++-+.---++.+++|.||+|+.|. =...=+.++||.+...++++.+-++..+.
T Consensus 227 rr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 227 RRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred chhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 3344444445668999999999998 33333468999999999999998887654
No 245
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=22.77 E-value=2.2e+02 Score=32.75 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 39 KDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
.+.++..++..++.||+.|++-.-...+ .--...++.++++|+++++.+|+
T Consensus 96 ddvv~~~v~~a~~~Gid~~rifd~lnd~----------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 96 DDVVERFVERAVKNGMDVFRVFDAMNDP----------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeeCCcH----------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 3467889999999999999887533333 35778899999999999988887
No 246
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=22.76 E-value=1.5e+02 Score=29.93 Aligned_cols=64 Identities=9% Similarity=-0.001 Sum_probs=42.5
Q ss_pred HHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeeeccccc---cCChhHHH
Q 010067 335 IARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAGENALS---RYDATAYN 399 (519)
Q Consensus 335 Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~---~~d~~~~~ 399 (519)
+++|+ .+|....++|+.-.--...-=.+.--++++..+....++.||.++|||.-- .+|.--|.
T Consensus 126 l~e~i-~~Gf~aiIv~v~~~gL~~~~LGr~id~~~~~~L~~l~~~~gid~~GEgGEyhT~V~d~PlF~ 192 (222)
T TIGR00289 126 LMYEV-AEKFEVIIVSVSAMGLDESWLGRRIDKECIDDLKRLNEKYGIHLAFEGGEAETLVLDAPLFK 192 (222)
T ss_pred HHHHH-HcCCeEEEEEEccCCCChHHcCCccCHHHHHHHHHHHhhcCccccCCCceEEEEEEeccccC
Confidence 45665 789999999876432211111233346788899999999999999999754 24544444
No 247
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=22.75 E-value=1.6e+02 Score=32.93 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
+.+++.+..+.++++|...||+++.+| |++.+.|.+.+++.+|-|+.=-++|
T Consensus 224 ~~~em~~ra~~a~~~G~~~~mv~~~~G-----------~~~l~~l~~~a~~~~l~IhaHrA~~ 275 (450)
T cd08212 224 TMEEMYKRAEFAKELGSPIIMHDLLTG-----------FTAIQSLAKWCRDNGMLLHLHRAGH 275 (450)
T ss_pred CHHHHHHHHHHHHHhCCCeEeeecccc-----------cchHHHHHHHhhhcCceEEeccccc
Confidence 368899999999999999999997654 5567778887878877664433443
No 248
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=22.58 E-value=1.3e+02 Score=31.70 Aligned_cols=60 Identities=28% Similarity=0.226 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 010067 40 DKLESQLKELKAAGVDGIMVDVW-WGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVG 107 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVG 107 (519)
++++..+++|.++|++.|-+|.= |...= .. .=+.|.+++..+-+ |++.. .+.|-|-||-+
T Consensus 156 ~al~~Ei~~L~~aG~~~IQiDeP~l~~~~----~~-~~~~~v~~~n~~~~-g~~~~--v~~HvC~G~~~ 216 (339)
T PRK09121 156 KILNQEAKELEAAGVDIIQFDEPAFNVFF----DE-VNDWGVAALERAIE-GLKCE--TAVHICYGYGI 216 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEecccHHhhhh----HH-HHHHHHHHHHHHHc-CCCCc--eEEEEeCCCCC
Confidence 36678889999999999999976 66311 00 13455555555554 67754 45699988863
No 249
>PF06336 Corona_5a: Coronavirus 5a protein; InterPro: IPR009404 This family consists of several Coronavirus 5a proteins. The function of this family is unknown [].
Probab=22.35 E-value=76 Score=26.19 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.8
Q ss_pred cccccchhhHHHHHHHHHHHHH
Q 010067 260 TYLSEQGNFFLTWYSNKLMFHG 281 (519)
Q Consensus 260 ~~~s~YGrFFL~WYs~~L~~Hg 281 (519)
.|.+.+||-|++-|.+.|+.+.
T Consensus 2 kwltsfgra~iscyksllltql 23 (65)
T PF06336_consen 2 KWLTSFGRAFISCYKSLLLTQL 23 (65)
T ss_pred chHHHHhHHHHHHHHHHHHHHH
Confidence 4999999999999999998775
No 250
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=22.27 E-value=2.4e+02 Score=27.83 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeee-ccCCCccccchh----HHHHHHHHHHcCCcEEEEEeee
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGII-ESKGPRQYDWSA----YRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiV-E~~~p~~YdWs~----Y~~l~~mv~~~GLKv~~imsfH 100 (519)
+.+++-++..+.+|+..|.+ .||.. +...+.+. |.. .+++.+++++.|+++ .+-.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~--~~g~~~~~~~~~~~-~~~~~~~l~~l~~~a~~~Gv~l--~lE~~ 145 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINC--LVGKTPAGFSSEQI-HATLVENLRYAANMLMKEDILL--LIEPI 145 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEE--CCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHcCCEE--EEEeC
Confidence 45778888899999998865 34432 11111221 333 377788899999887 67664
No 251
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=22.18 E-value=1.3e+02 Score=35.13 Aligned_cols=59 Identities=15% Similarity=0.375 Sum_probs=38.2
Q ss_pred HHHHHHHcCcceEEEe-e----------------eeeeecc---CCCccc----cchhHHHHHHHHHHcCCcEEEEEee-
Q 010067 45 QLKELKAAGVDGIMVD-V----------------WWGIIES---KGPRQY----DWSAYRSLFELIQQYELKLQAIMSF- 99 (519)
Q Consensus 45 ~L~~LK~~GVdgV~vd-V----------------WWGiVE~---~~p~~Y----dWs~Y~~l~~mv~~~GLKv~~imsf- 99 (519)
.|..||++||+.|.+- | .||.-=. .-+..| .-..++++++.+++.||+|..=+-|
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~N 268 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYN 268 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 4899999999999752 2 2442100 001122 2456999999999999999555555
Q ss_pred eccC
Q 010067 100 HQCG 103 (519)
Q Consensus 100 HqCG 103 (519)
|-+.
T Consensus 269 Ht~~ 272 (688)
T TIGR02100 269 HTAE 272 (688)
T ss_pred CccC
Confidence 5443
No 252
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=22.15 E-value=1.6e+02 Score=31.01 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCC-------ccccchhHHHHHHHHHHcCCc
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGP-------RQYDWSAYRSLFELIQQYELK 92 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLK 92 (519)
+..|+.||++||+.|.+.| |...+ ...++.-+.+.+++++++|++
T Consensus 99 ~e~l~~l~~~G~~rvsiGv-----qS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL-----QAWQNSLLKYLGRIHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC-----ccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 4579999999999999988 54332 335788899999999999987
No 253
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=22.11 E-value=1.4e+02 Score=29.89 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEE
Q 010067 42 LESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAI 96 (519)
Q Consensus 42 ~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~i 96 (519)
+...++.+-++|+++|.+-+.+|.- .+.++- .--.++.+.++++|+.+.++
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~g~~---~~~~~~-~~~~~i~~~~~~~g~~liv~ 142 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNVGSD---TEWEQI-RDLGMIAEICDDWGVPLLAM 142 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEecCCc---hHHHHH-HHHHHHHHHHHHcCCCEEEE
Confidence 4456788889999999999987741 112222 45666777788899988653
No 254
>PRK14705 glycogen branching enzyme; Provisional
Probab=21.88 E-value=1.6e+02 Score=36.74 Aligned_cols=53 Identities=17% Similarity=0.352 Sum_probs=37.2
Q ss_pred HHHHHH-HHHHHHcCcceEEEeeeeeeeccCCCccccch-----------------hHHHHHHHHHHcCCcEEEEEee
Q 010067 40 DKLESQ-LKELKAAGVDGIMVDVWWGIIESKGPRQYDWS-----------------AYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 40 ~~~~~~-L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKv~~imsf 99 (519)
+++... |..||++||+.|.+== +.| -|....|- .++++++.+++.||+| ||-+
T Consensus 765 ~~l~~~lldYlk~LGvt~IeLmP---v~e--~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~V--ILD~ 835 (1224)
T PRK14705 765 RELAKELVDYVKWLGFTHVEFMP---VAE--HPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGV--LLDW 835 (1224)
T ss_pred HHHHHHHHHHHHHhCCCEEEECc---ccc--CCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEE--EEEe
Confidence 445555 6999999999997531 233 23334453 3899999999999999 5554
No 255
>PRK08005 epimerase; Validated
Probab=21.81 E-value=98 Score=30.90 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc--cchhHHHHHHHHHHc
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY--DWSAYRSLFELIQQY 89 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mv~~~ 89 (519)
|...++++|++|+++|+|-+++|| -+|+| |.+-=-..++.+|+.
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDv--------MDG~FVPN~tfG~~~i~~l~~~ 56 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDI--------EDTSFINNITFGMKTIQAVAQQ 56 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--------cCCCcCCccccCHHHHHHHHhc
Confidence 456789999999999999999998 35555 344334555555553
No 256
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.59 E-value=1.8e+02 Score=30.97 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCc----------cccchhHHHHHHHHHHcCCc-E
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPR----------QYDWSAYRSLFELIQQYELK-L 93 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~----------~YdWs~Y~~l~~mv~~~GLK-v 93 (519)
+.++++||++||++|++.+ |...+. ..+|..-.+.++.++++|++ |
T Consensus 163 ~e~l~~Lk~aGv~r~~i~l-----ET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 219 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQ-----ETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKI 219 (371)
T ss_pred HHHHHHHHHcCCCEEEEEE-----ecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 6678999999999999764 432222 44677777788999999996 6
No 257
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.52 E-value=2e+02 Score=28.04 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccc----hhHHHHHHHHHHcCCcEEEEEeee
Q 010067 40 DKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDW----SAYRSLFELIQQYELKLQAIMSFH 100 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdW----s~Y~~l~~mv~~~GLKv~~imsfH 100 (519)
+.+++-++..+.+|+..|. ++.|......+..=.| +..+++.+++++.|+++ .+-+|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~--~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l--~lE~~ 144 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVN--CLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTL--LIEPI 144 (254)
T ss_pred HHHHHHHHHHHHhCCCEEE--ECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEE--EEEEC
Confidence 5667777889999999775 5666543211111113 45788999999999887 66665
No 258
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=21.19 E-value=2.3e+02 Score=28.27 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=37.9
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeec
Q 010067 35 VLEDKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQ 101 (519)
Q Consensus 35 ~~~~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHq 101 (519)
.+.+.+.....|+.++++||..|. + +|.. +.++ + .+.+.+++++.|+++.+...+|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~Gvttiv-~--~~~~---~~~~-~---~~~~~~~~~~~g~~v~~~~G~hp 83 (293)
T cd00530 27 DLADVEAAKEELKRFRAHGGRTIV-D--ATPP---GIGR-D---VEKLAEVARATGVNIVAATGFYK 83 (293)
T ss_pred chhhHHHHHHHHHHHHHcCCCeEE-E--cCCc---ccCc-C---HHHHHHHHHHhCCcEEEecccCC
Confidence 344556777789999999998772 1 1110 0011 2 36678888899999987777773
No 259
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.17 E-value=2.7e+02 Score=22.45 Aligned_cols=47 Identities=11% Similarity=0.002 Sum_probs=36.6
Q ss_pred HHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeee
Q 010067 334 PIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAG 386 (519)
Q Consensus 334 ~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~G 386 (519)
.+|.+|++.|+.+++ +++++.-. ...++.+...+....++.||.+-=
T Consensus 13 E~A~~l~~~g~~vtl--i~~~~~~~----~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 13 ELAEALAELGKEVTL--IERSDRLL----PGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHHTTSEEEE--EESSSSSS----TTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHhCcEEEE--Eeccchhh----hhcCHHHHHHHHHHHHHCCCEEEe
Confidence 468899999987755 78877543 366788889999999999998753
No 260
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=21.14 E-value=89 Score=30.82 Aligned_cols=141 Identities=21% Similarity=0.310 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc--cchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCC
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY--DWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIP 115 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP 115 (519)
+...+++++++|+++|++.+++||= +|+| +.+-=-+.++-+++. -++ .+..|----| +=
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiM--------Dg~fvpn~~~g~~~i~~i~~~-~~~--~~DvHLMv~~--------P~ 70 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIM--------DGHFVPNLTFGPDIIKAIRKI-TDL--PLDVHLMVEN--------PE 70 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEE--------BSSSSSSB-B-HHHHHHHHTT-SSS--EEEEEEESSS--------GG
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeec--------ccccCCcccCCHHHHHHHhhc-CCC--cEEEEeeecc--------HH
Confidence 3456899999999999999999985 3333 244334455555555 222 3444532211 22
Q ss_pred hhhhhhhccCCCeeeecCCCCccccccccccCCccCCCCCChHHHHHHHHHHHHHHHHhhhcccceEEEEeeccCCCCCC
Q 010067 116 KWVLEIGETNPDIFYTNRSGNRNKEYLTIGVDHKPLFDGRTAIEIYSDYMKSFRKNMFDFLEAGVIIDIEVGLGPAGELR 195 (519)
Q Consensus 116 ~WV~~~g~~~PDi~ytD~~G~rn~E~lSlg~D~~pvl~GRTpi~~Y~dfm~sF~~~f~~~l~~~~I~eI~VGlGP~GELR 195 (519)
.|+.+-.+.-+|++.. =+.. + +.-.++.+..|+. |.-..|-+ -|+=.+-
T Consensus 71 ~~i~~~~~~g~~~i~~-------------H~E~-------~--~~~~~~i~~ik~~-------g~k~Gial--nP~T~~~ 119 (201)
T PF00834_consen 71 RYIEEFAEAGADYITF-------------HAEA-------T--EDPKETIKYIKEA-------GIKAGIAL--NPETPVE 119 (201)
T ss_dssp GHHHHHHHHT-SEEEE-------------EGGG-------T--TTHHHHHHHHHHT-------TSEEEEEE---TTS-GG
T ss_pred HHHHHHHhcCCCEEEE-------------cccc-------h--hCHHHHHHHHHHh-------CCCEEEEE--ECCCCch
Confidence 3666554555554432 2221 1 1123444555443 44444443 4433222
Q ss_pred -CCCC-CCCCC----CccCCCcccccccHHHHHHHHHHHH
Q 010067 196 -YPSY-PESQG----WVFPGIGEFQCYDKYLKAEFKEAAT 229 (519)
Q Consensus 196 -YPSy-p~~~g----W~~pGiGEFQCYDky~~~~f~~~a~ 229 (519)
+-.| +..+. -.-||-|. |++...+.+.+++..+
T Consensus 120 ~~~~~l~~vD~VlvMsV~PG~~G-q~f~~~~~~KI~~l~~ 158 (201)
T PF00834_consen 120 ELEPYLDQVDMVLVMSVEPGFGG-QKFIPEVLEKIRELRK 158 (201)
T ss_dssp GGTTTGCCSSEEEEESS-TTTSS-B--HGGHHHHHHHHHH
T ss_pred HHHHHhhhcCEEEEEEecCCCCc-ccccHHHHHHHHHHHH
Confidence 1122 22222 22388765 8998888887665543
No 261
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=21.07 E-value=8.4e+02 Score=25.45 Aligned_cols=86 Identities=19% Similarity=0.363 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCc-----cc-----cchhHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 010067 38 DKDKLESQLKELKAAG--VDGIMVDVWWGIIESKGPR-----QY-----DWSAYRSLFELIQQYELKLQAIMSFHQCGGN 105 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~G--VdgV~vdVWWGiVE~~~p~-----~Y-----dWs~Y~~l~~mv~~~GLKv~~imsfHqCGGN 105 (519)
..+.+..-.+.+++.| +|.|.+|-|=...+. .-+ .| .|.-.+++++-+++.|+|+ |+..|
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~-~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~--~~~i~----- 92 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRET-SFGDRLWWNWEWDPERYPGLDELIEELKARGIRV--LTYIN----- 92 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccc-cccceeeeeeEEChhhCCCHHHHHHHHHHCCCEE--EEEec-----
Confidence 6778888999999875 588889876221121 112 12 3356789999999999999 55554
Q ss_pred CCCccccc--CChhhhhhhccCCCeeeecCCCCc
Q 010067 106 VGDVVTIP--IPKWVLEIGETNPDIFYTNRSGNR 137 (519)
Q Consensus 106 VGD~~~Ip--LP~WV~~~g~~~PDi~ytD~~G~r 137 (519)
+.|. -+.. -+.+.+. +.++++.+|..
T Consensus 93 ----P~v~~~~~~~-y~~~~~~-g~~vk~~~g~~ 120 (317)
T cd06594 93 ----PYLADDGPLY-YEEAKDA-GYLVKDADGSP 120 (317)
T ss_pred ----CceecCCchh-HHHHHHC-CeEEECCCCCe
Confidence 2221 1222 2444444 78999998864
No 262
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=20.91 E-value=1.7e+02 Score=31.06 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeee--eeeecc------CCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCC
Q 010067 40 DKLESQLKELKAAGVDGIMVDVW--WGIIES------KGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNV 106 (519)
Q Consensus 40 ~~~~~~L~~LK~~GVdgV~vdVW--WGiVE~------~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNV 106 (519)
+.+...|++|++.|+|||-+|+= |-.||. .++-+=.=..|.++.+.+|.+.=-+.+| -|-|+++
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi---~qng~~l 197 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVI---PQNGAEL 197 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEE---ecccHhh
Confidence 47789999999999999988863 222221 1122233345888889998876545544 2455544
No 263
>PRK10426 alpha-glucosidase; Provisional
Probab=20.77 E-value=4.1e+02 Score=30.74 Aligned_cols=87 Identities=17% Similarity=0.347 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcC--cceEEEeeeeeeecc-CCCcc---ccc-----hhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 010067 39 KDKLESQLKELKAAG--VDGIMVDVWWGIIES-KGPRQ---YDW-----SAYRSLFELIQQYELKLQAIMSFHQCGGNVG 107 (519)
Q Consensus 39 ~~~~~~~L~~LK~~G--VdgV~vdVWWGiVE~-~~p~~---YdW-----s~Y~~l~~mv~~~GLKv~~imsfHqCGGNVG 107 (519)
.+.+..-++++++.| +|+|.+|-|-+.-.. .+.+. |.| ..-+++++-.++.|+|+.+++-=|
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~------- 292 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPY------- 292 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCc-------
Confidence 566888899999987 688888866443221 11111 222 345788899999999995554333
Q ss_pred CcccccCChhhhhhhccCCCeeeecCCCCc
Q 010067 108 DVVTIPIPKWVLEIGETNPDIFYTNRSGNR 137 (519)
Q Consensus 108 D~~~IpLP~WV~~~g~~~PDi~ytD~~G~r 137 (519)
|..-.-+-+++.+. +.|.+|.+|..
T Consensus 293 ----v~~~~~~y~e~~~~-gy~vk~~~g~~ 317 (635)
T PRK10426 293 ----LASDGDLCEEAAEK-GYLAKDADGGD 317 (635)
T ss_pred ----cCCCCHHHHHHHHC-CcEEECCCCCE
Confidence 22112234455544 89999999874
No 264
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=20.71 E-value=1.4e+02 Score=32.24 Aligned_cols=58 Identities=22% Similarity=0.195 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeecc----CCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 010067 42 LESQLKELKAAGVDGIMVDVWWGIIES----KGPRQYDWSAYRSLFELIQQYELKLQAIMSF 99 (519)
Q Consensus 42 ~~~~L~~LK~~GVdgV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsf 99 (519)
++.-|++||++|.+.++..-===+.|. ..|.+-++.+..+..+.|.+.|++-...|-+
T Consensus 160 ~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~ 221 (370)
T COG1060 160 YEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLL 221 (370)
T ss_pred HHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 466699999999999987544334443 4588999999999999999999999888877
No 265
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.60 E-value=3.8e+02 Score=28.02 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhh
Q 010067 39 KDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQCGGNVGDVVTIPIPKWV 118 (519)
Q Consensus 39 ~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHqCGGNVGD~~~IpLP~WV 118 (519)
...+++=++.+|++|||||.|.- =| + ..=+++.+.++++||+...+-+= + +.+.++
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivpD--------LP--~--ee~~~~~~~~~~~gi~~I~lvaP-----------t-t~~~rl 163 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVPD--------LP--P--EESDELLKAAEKHGIDPIFLVAP-----------T-TPDERL 163 (265)
T ss_pred HhhHHHHHHHHHHcCCCEEEeCC--------CC--h--HHHHHHHHHHHHcCCcEEEEeCC-----------C-CCHHHH
Confidence 45668789999999999998852 11 1 12246788889999999555432 2 234566
Q ss_pred hhhhc-cCCCeeeecCCCCcc
Q 010067 119 LEIGE-TNPDIFYTNRSGNRN 138 (519)
Q Consensus 119 ~~~g~-~~PDi~ytD~~G~rn 138 (519)
..+.+ +..-|+|..+.|..-
T Consensus 164 ~~i~~~a~GFiY~vs~~GvTG 184 (265)
T COG0159 164 KKIAEAASGFIYYVSRMGVTG 184 (265)
T ss_pred HHHHHhCCCcEEEEecccccC
Confidence 65544 346699999987655
No 266
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=20.60 E-value=3.1e+02 Score=28.08 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEeeec
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQYDWSAYRSLFELIQQYELKLQAIMSFHQ 101 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~imsfHq 101 (519)
+-+++++.+++||+ ++|-|-|+.=||.-. +-.+|++...=+|.+|+++|.
T Consensus 126 P~~~~~~~v~~lk~-~~D~IIV~~H~g~ts-------------Ek~ala~~ldg~VdvIvGtHT 175 (255)
T cd07382 126 PFRAADELLEELKE-EADIIFVDFHAEATS-------------EKIALGWYLDGRVSAVVGTHT 175 (255)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEECCCCCH-------------HHHHHHHhCCCCceEEEeCCC
Confidence 34678899999998 999999999997521 223444544445777999993
No 267
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=20.54 E-value=3.9e+02 Score=24.02 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCcceEEEeee-ee--eeccCCCccccchhHHHHHHHHHHcC-CcEEEEEe
Q 010067 43 ESQLKELKAAGVDGIMVDVW-WG--IIESKGPRQYDWSAYRSLFELIQQYE-LKLQAIMS 98 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVW-WG--iVE~~~p~~YdWs~Y~~l~~mv~~~G-LKv~~ims 98 (519)
+..++.|+++|++.|.+++= +. +-+. -.....++-+.+.++.++++| +++...+-
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~ 158 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSGSDEVLKA-INRGHTVEDVLEAVEKLREAGPIKVSTDLI 158 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHHHHHH-hcCCCCHHHHHHHHHHHHHhCCcceEEeEE
Confidence 34566777777777777665 32 1111 112235677777777778888 55544333
No 268
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=20.54 E-value=1.8e+02 Score=29.42 Aligned_cols=69 Identities=9% Similarity=0.048 Sum_probs=47.1
Q ss_pred hHHHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCeeeeccccc---cCChhHHHH
Q 010067 332 YRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEVAGENALS---RYDATAYNQ 400 (519)
Q Consensus 332 Y~~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAL~---~~d~~~~~q 400 (519)
...+++.|-.+|+....+|+.-..-...--...-=++++..+.+...+.||.++|||.-- .+|.--|.+
T Consensus 123 ~~~ll~e~i~~G~~aiIv~v~a~gL~~~~LGr~i~~e~i~~L~~~~~~~gvd~~GEgGEyhT~V~d~PlF~~ 194 (223)
T TIGR00290 123 PEKLMEEFVEEKFEARIIAVAAEGLDESWLGRRIDRKMIDELKKLNEKYGIHPAGEGGEFETLVLDAPIFKK 194 (223)
T ss_pred HHHHHHHHHHcCCeEEEEEEecCCCChHHcCCcccHHHHHHHHHHHhccCCCccCCCceEEEEEecCccccc
Confidence 466888888999999999986543221111133335788888888889999999999754 245444443
No 269
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=20.32 E-value=1.1e+02 Score=30.46 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc--cchhHHHHHHHHHHcC
Q 010067 38 DKDKLESQLKELKAAGVDGIMVDVWWGIIESKGPRQY--DWSAYRSLFELIQQYE 90 (519)
Q Consensus 38 ~~~~~~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mv~~~G 90 (519)
|...++.+|++|+++|++.+++|| -+|+| |.+.=-+.++.+|+.+
T Consensus 17 d~~~l~~~~~~l~~~~~~~~H~Di--------mDg~fvpn~~~G~~~v~~lr~~~ 63 (228)
T PTZ00170 17 DFSKLADEAQDVLSGGADWLHVDV--------MDGHFVPNLSFGPPVVKSLRKHL 63 (228)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec--------ccCccCCCcCcCHHHHHHHHhcC
Confidence 556889999999999999999998 35666 4555567777777765
No 270
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=20.31 E-value=1.8e+02 Score=30.89 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcc----------ccchhHHHHHHHHHHcCCc-E
Q 010067 43 ESQLKELKAAGVDGIMVDVWWGIIESKGPRQ----------YDWSAYRSLFELIQQYELK-L 93 (519)
Q Consensus 43 ~~~L~~LK~~GVdgV~vdVWWGiVE~~~p~~----------YdWs~Y~~l~~mv~~~GLK-v 93 (519)
..++++||++||+.+++.+ |.-.+.. -+|..-.+.++.++++|++ |
T Consensus 162 ~e~~~~Lk~aGv~r~~i~l-----ET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 218 (366)
T TIGR02351 162 EEEYKKLVEAGLDGVTVYQ-----ETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKI 218 (366)
T ss_pred HHHHHHHHHcCCCEEEEEe-----ecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 5688999999999999853 4322333 2455567788999999997 5
No 271
>PLN02899 alpha-galactosidase
Probab=20.17 E-value=1.6e+02 Score=34.35 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=38.3
Q ss_pred HHHHcCcceEEEeeeeeeecc-------------CCCccccc-----h------hHHHHHHHHHHcCCcEEEEEeeeccC
Q 010067 48 ELKAAGVDGIMVDVWWGIIES-------------KGPRQYDW-----S------AYRSLFELIQQYELKLQAIMSFHQCG 103 (519)
Q Consensus 48 ~LK~~GVdgV~vdVWWGiVE~-------------~~p~~YdW-----s------~Y~~l~~mv~~~GLKv~~imsfHqCG 103 (519)
.||.+|=+.|.||.-|-.-+. .+-|+.-+ - |.+.|++.|+..|||. ..|.+-
T Consensus 60 GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPDp~RFPSs~~g~GmK~LADYVHskGLKF----GIY~~~ 135 (633)
T PLN02899 60 RLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWPSSRGGKGFTEVAEKVHAMGLKF----GIHVMR 135 (633)
T ss_pred chHhhCCeEEEEccccccccccccccccccccccCCCCCCccCcccCCCCccCCCcHHHHHHHHhCCcce----EEEecC
Confidence 578999999999988854321 11223322 2 8999999999999998 555555
Q ss_pred CC
Q 010067 104 GN 105 (519)
Q Consensus 104 GN 105 (519)
|.
T Consensus 136 Gi 137 (633)
T PLN02899 136 GI 137 (633)
T ss_pred CC
Confidence 53
No 272
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=20.07 E-value=2.4e+02 Score=25.54 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=38.3
Q ss_pred CChHHHHHHHhhcCcEEEEeeccccCCCCCCcCCCChHHHHHHHHHHhhhcCCee
Q 010067 330 DGYRPIARILSRHYGILNFTCLEMRNSEQDAAAKCGPQELVQQVLSGGWRENIEV 384 (519)
Q Consensus 330 dGY~~Ia~m~~rh~~~l~fTclEM~d~e~~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~ 384 (519)
-|+..+.+.+++..+.|.+-+- .++|.+....+...|+..+|++
T Consensus 29 ~G~~~v~kaikkgka~LVilA~-----------D~s~~~~~~~i~~lc~~~~Ip~ 72 (117)
T TIGR03677 29 KGTNEVTKAVERGIAKLVVIAE-----------DVEPPEIVAHLPALCEEKGIPY 72 (117)
T ss_pred EcHHHHHHHHHcCCccEEEEeC-----------CCCcHHHHHHHHHHHHHcCCCE
Confidence 4799999999999999999872 3678889999999999999985
Done!