Query 010070
Match_columns 519
No_of_seqs 238 out of 1897
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 20:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0128 AroA 5-enolpyruvylshik 100.0 1.9E-85 4.2E-90 674.6 46.7 413 85-519 10-427 (428)
2 PLN02338 3-phosphoshikimate 1- 100.0 8.2E-76 1.8E-80 625.4 52.8 439 80-518 4-442 (443)
3 PRK11861 bifunctional prephena 100.0 3.3E-75 7.2E-80 646.8 51.0 435 71-518 234-672 (673)
4 PRK11860 bifunctional 3-phosph 100.0 3.1E-73 6.7E-78 629.4 51.1 425 77-518 4-436 (661)
5 PF00275 EPSP_synthase: EPSP s 100.0 1.3E-73 2.9E-78 603.9 34.9 412 82-513 1-419 (419)
6 TIGR01356 aroA 3-phosphoshikim 100.0 3.7E-68 7.9E-73 561.5 48.9 407 90-519 1-409 (409)
7 KOG0692 Pentafunctional AROM p 100.0 2.8E-68 6E-73 534.7 25.2 506 3-516 15-545 (595)
8 cd01554 EPT-like Enol pyruvate 100.0 3.8E-63 8.2E-68 523.1 50.1 403 88-516 1-408 (408)
9 cd01556 EPSP_synthase EPSP syn 100.0 1.1E-62 2.4E-67 519.4 49.4 406 88-516 1-409 (409)
10 PRK02427 3-phosphoshikimate 1- 100.0 1.8E-62 3.9E-67 522.1 48.7 415 80-519 5-433 (435)
11 PRK14806 bifunctional cyclohex 100.0 1.5E-61 3.3E-66 545.9 48.2 415 76-519 300-729 (735)
12 PRK09369 UDP-N-acetylglucosami 100.0 1.8E-56 3.8E-61 473.5 45.6 406 77-519 1-413 (417)
13 COG0766 MurA UDP-N-acetylgluco 100.0 5.6E-56 1.2E-60 441.6 42.1 405 77-519 1-414 (421)
14 cd01555 UdpNAET UDP-N-acetylgl 100.0 3.7E-55 8E-60 461.1 44.4 393 88-516 1-400 (400)
15 PRK12830 UDP-N-acetylglucosami 100.0 2E-54 4.3E-59 457.9 44.0 404 77-519 1-411 (417)
16 TIGR01072 murA UDP-N-acetylglu 100.0 1.1E-53 2.4E-58 452.2 46.9 407 77-519 1-413 (416)
17 TIGR01356 aroA 3-phosphoshikim 100.0 6.8E-35 1.5E-39 308.0 34.4 329 90-451 70-409 (409)
18 COG0128 AroA 5-enolpyruvylshik 100.0 1.8E-34 3.9E-39 297.5 33.3 342 78-452 70-428 (428)
19 PRK02427 3-phosphoshikimate 1- 100.0 2.9E-34 6.3E-39 305.5 32.5 333 92-453 87-435 (435)
20 PRK09369 UDP-N-acetylglucosami 100.0 2.2E-33 4.7E-38 297.2 33.0 296 114-453 110-415 (417)
21 PRK12830 UDP-N-acetylglucosami 100.0 9.8E-33 2.1E-37 292.2 34.1 311 105-457 97-417 (417)
22 TIGR01072 murA UDP-N-acetylglu 100.0 9.6E-32 2.1E-36 284.6 32.8 329 79-453 70-415 (416)
23 PLN02338 3-phosphoshikimate 1- 100.0 6.6E-31 1.4E-35 280.3 32.8 329 91-449 93-441 (443)
24 cd01556 EPSP_synthase EPSP syn 100.0 2.8E-30 6.1E-35 272.6 33.7 340 78-448 58-409 (409)
25 cd01555 UdpNAET UDP-N-acetylgl 100.0 3.2E-30 7E-35 271.5 32.9 325 79-448 60-400 (400)
26 COG0766 MurA UDP-N-acetylgluco 100.0 5.8E-30 1.3E-34 255.7 30.7 290 122-455 120-418 (421)
27 PRK11861 bifunctional prephena 100.0 2.8E-29 6.1E-34 279.5 34.0 321 95-449 328-671 (673)
28 PRK11860 bifunctional 3-phosph 100.0 5.7E-29 1.2E-33 276.3 33.5 325 173-519 23-364 (661)
29 cd01554 EPT-like Enol pyruvate 100.0 5E-28 1.1E-32 255.6 34.3 319 91-448 76-408 (408)
30 PF00275 EPSP_synthase: EPSP s 100.0 1.7E-28 3.6E-33 259.8 22.3 320 91-445 85-419 (419)
31 PRK14806 bifunctional cyclohex 99.9 3.4E-25 7.4E-30 250.5 29.9 268 229-519 300-577 (735)
32 cd01553 EPT_RTPC-like This dom 99.9 4.9E-26 1.1E-30 218.7 17.5 176 324-516 6-211 (211)
33 KOG0692 Pentafunctional AROM p 99.8 4.9E-18 1.1E-22 172.5 18.1 329 96-448 188-545 (595)
34 cd01553 EPT_RTPC-like This dom 99.4 4.6E-12 9.9E-17 121.8 15.0 172 249-448 7-211 (211)
35 PF01137 RTC: RNA 3'-terminal 94.7 1.7 3.7E-05 42.2 15.8 182 100-301 12-226 (228)
36 TIGR03399 RNA_3prim_cycl RNA 3 93.7 4.2 9E-05 41.8 17.1 122 96-224 10-148 (326)
37 COG0430 RCL1 RNA 3'-terminal p 93.5 1.6 3.5E-05 44.4 13.3 118 100-224 16-150 (341)
38 PRK04204 RNA 3'-terminal-phosp 93.4 3.6 7.9E-05 42.5 16.2 122 96-224 12-150 (343)
39 cd00874 RNA_Cyclase_Class_II R 93.1 4.5 9.8E-05 41.5 16.3 122 96-224 8-146 (326)
40 cd00875 RNA_Cyclase_Class_I RN 91.0 9.1 0.0002 39.6 15.7 119 96-221 8-143 (341)
41 TIGR03400 18S_RNA_Rcl1p 18S rR 91.0 7.4 0.00016 40.6 15.0 116 102-224 10-145 (360)
42 cd00295 RNA_Cyclase RNA 3' pho 90.0 6.1 0.00013 40.8 13.3 120 98-224 10-146 (338)
43 COG0430 RCL1 RNA 3'-terminal p 89.1 5.1 0.00011 40.8 11.6 121 176-301 14-150 (341)
44 PF01137 RTC: RNA 3'-terminal 85.8 33 0.00071 33.3 14.8 185 258-455 15-227 (228)
45 TIGR03400 18S_RNA_Rcl1p 18S rR 85.5 23 0.00051 36.9 14.5 121 176-301 6-145 (360)
46 cd00295 RNA_Cyclase RNA 3' pho 85.3 33 0.00071 35.5 15.3 122 175-301 9-146 (338)
47 PRK04204 RNA 3'-terminal-phosp 84.2 44 0.00095 34.6 15.6 122 175-301 13-150 (343)
48 cd00875 RNA_Cyclase_Class_I RN 84.2 39 0.00084 35.0 15.3 120 175-298 9-143 (341)
49 TIGR03399 RNA_3prim_cycl RNA 3 84.0 36 0.00079 34.9 14.9 123 175-301 11-148 (326)
50 cd00874 RNA_Cyclase_Class_II R 82.8 51 0.0011 33.9 15.4 122 175-301 9-146 (326)
51 KOG3980 RNA 3'-terminal phosph 69.2 1.4E+02 0.0031 30.6 14.7 126 90-223 5-147 (361)
52 COG4274 Uncharacterized conser 62.9 42 0.00091 28.0 7.1 80 427-516 22-103 (104)
53 KOG3980 RNA 3'-terminal phosph 59.7 1.2E+02 0.0026 31.1 11.1 113 334-453 18-147 (361)
54 PF08734 GYD: GYD domain; Int 51.3 85 0.0018 25.7 7.4 57 433-495 17-74 (91)
55 TIGR00330 glpX fructose-1,6-bi 33.3 2.2E+02 0.0047 29.0 8.2 135 77-223 119-263 (321)
56 PF07833 Cu_amine_oxidN1: Copp 32.4 41 0.00089 26.9 2.6 78 129-227 9-87 (93)
57 TIGR01245 trpD anthranilate ph 30.6 1.4E+02 0.003 30.8 6.7 84 123-224 46-129 (330)
58 PHA02627 hypothetical protein; 28.9 40 0.00086 25.3 1.7 26 120-145 31-56 (73)
59 PRK14607 bifunctional glutamin 27.9 2.3E+02 0.005 31.2 8.3 107 248-375 221-327 (534)
60 PF06076 Orthopox_F14: Orthopo 26.5 47 0.001 24.9 1.7 26 120-145 31-56 (73)
61 COG0547 TrpD Anthranilate phos 25.4 2.2E+02 0.0047 29.4 7.0 108 248-376 30-137 (338)
62 PRK10850 PTS system phosphohis 25.4 3.6E+02 0.0078 21.7 8.0 80 193-294 4-83 (85)
63 TIGR01245 trpD anthranilate ph 25.1 2.7E+02 0.0058 28.6 7.7 108 248-375 23-130 (330)
64 PRK07394 hypothetical protein; 24.0 4.1E+02 0.0088 27.5 8.8 110 248-374 35-144 (342)
65 PRK09522 bifunctional glutamin 23.6 2.5E+02 0.0054 31.0 7.5 108 248-376 226-333 (531)
66 PHA02780 hypothetical protein; 22.8 62 0.0013 24.3 1.8 26 120-145 31-56 (73)
67 PRK00188 trpD anthranilate pho 22.7 2.9E+02 0.0063 28.4 7.5 106 248-375 29-134 (339)
68 COG0602 NrdG Organic radical a 22.1 1.3E+02 0.0029 28.8 4.5 35 192-226 72-106 (212)
69 COG0547 TrpD Anthranilate phos 22.1 2.1E+02 0.0045 29.6 6.1 83 123-224 53-135 (338)
70 PRK07394 hypothetical protein; 22.1 2.6E+02 0.0057 28.9 6.9 87 123-224 58-144 (342)
71 COG2820 Udp Uridine phosphoryl 21.6 3.4E+02 0.0074 26.6 7.0 78 441-518 75-187 (248)
72 cd01516 FBPase_glpX Bacterial 21.5 2E+02 0.0043 29.2 5.5 128 77-220 119-247 (309)
73 PF13541 ChlI: Subunit ChlI of 21.3 1.3E+02 0.0028 26.1 3.9 94 345-451 12-113 (121)
74 TIGR01157 pufL photosynthetic 20.6 1.2E+02 0.0026 29.3 3.7 44 472-516 191-236 (239)
No 1
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-85 Score=674.64 Aligned_cols=413 Identities=44% Similarity=0.675 Sum_probs=371.2
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccC
Q 010070 85 IREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQ 164 (519)
Q Consensus 85 ~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~ 164 (519)
..+++|+|++|||||++||+|++|+|++|+++|+|++.++|+..|++++++||++|++++ ..+.|+|.++.+..+
T Consensus 10 ~~~l~G~v~~PgSKSishRalilaaLA~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~--~~~~v~g~g~~~~~~--- 84 (428)
T COG0128 10 PSPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLDSEDTLATLEALRALGARIEKEG--DTLVVRGTGGELKEP--- 84 (428)
T ss_pred CCccceEEECCCCccHHHHHHHHHHHcCCceEEeeeeccHhHHHHHHHHHHhCCeEEccC--CEEEEeCCCCCcCCC---
Confidence 357999999999999999999999999999999999999999999999999999999865 589999987533443
Q ss_pred CCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCce
Q 010070 165 TGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244 (519)
Q Consensus 165 ~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~ 244 (519)
...+++|||||++|+|+++++.. .++.++++|+.+|++|||.+++++|+++|++|+..++.+++|+.|+|+ +.++
T Consensus 85 --~~~l~~GnSGTt~R~l~glla~~-~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~Pl~i~G~--~~~~ 159 (428)
T COG0128 85 --PAVLDCGNSGTTLRLLTGLLALG-SPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTIKGG--LKGG 159 (428)
T ss_pred --CceeeeccchhHHHHHHHHHhcC-CCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEecCCCCcCCEEEECC--CCCc
Confidence 46899999999999999998862 347899999999999999999999999999999877678899999996 7788
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccc
Q 010070 245 KVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFV 324 (519)
Q Consensus 245 ~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i 324 (519)
.+++++++||||++++||+|++..+..++.......|++|+++|+++|++||++|+.++. .|.|+|++++. |.+|.|
T Consensus 160 ~i~i~~~~SSq~vsslL~~a~l~~~~~~~~~~~~~~s~~yid~T~~mL~~FGv~v~~~~~--~~~i~~g~~~~-~~~~~V 236 (428)
T COG0128 160 EVEIDGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEGY--RFYIPGGQKLT-PGDYDV 236 (428)
T ss_pred eEEEeccchHHHHHHHHHHHhhcCCCcEEEecCccCCccHHHHHHHHHHHcCCeEEeecc--EEEECCCcccc-CceEEc
Confidence 999999999999999999988887444443444577899999999999999999999854 79999988766 889999
Q ss_pred cCChhhHHHHHHHHHhc-CCe-EEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeE-EEeCCCCCCCCCCCcceeEEeC
Q 010070 325 EGDASSASYFVAGAAVT-GGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV-TVTGPPRDPYGRKHLRAVDVNM 401 (519)
Q Consensus 325 ~~D~~~a~~~la~aa~~-~g~-v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i-~i~g~~~~~~~~~~l~g~~v~~ 401 (519)
|+|+|+|+||+++++++ +.+ ++++++..+ +.|..++++|++||+++++.++.. +|.+. ..|+|+++|+
T Consensus 237 pgD~SSAafflaAaai~~~~~~i~~~~v~~~--~~~~~~~~vl~~MGa~i~~~~~~~l~V~~~-------~~l~gi~vd~ 307 (428)
T COG0128 237 PGDYSSAAFFLAAAAITPRSTGITLKNVQPN--PTDKGILDVLEKMGADIEIGDDSVLRVRGS-------GELKGIEVDM 307 (428)
T ss_pred CCChhhHHHHHHHHHhcCCCceeeeccCCcC--cchhHHHHHHHHcCCeEEEccCceEEEeec-------CCccCeEeCc
Confidence 99999999999999987 555 777776652 445778999999999999998884 88775 2499999999
Q ss_pred CCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccE-EecCccHHH
Q 010070 402 NKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA-IDTYDDHRM 480 (519)
Q Consensus 402 ~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~-i~~~~Dhr~ 480 (519)
+++||++|+++++|++|+|+|+|+|+++||+|||||+.+++++|+|||+++++.+|++.|+|+.+++|.. +++|+||||
T Consensus 308 ~~~pD~~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi~a~a~eL~klG~~v~e~~Dgl~I~g~~~l~g~~~v~s~~DHRi 387 (428)
T COG0128 308 DDMPDLAPTLAVLAAFAEGTTRIRNAEELRVKESDRIAAMATELRKLGVEVEETEDGLIITGGTKLKGAGTVDSYGDHRI 387 (428)
T ss_pred ccCchHHHHHHHHHHhcCCCeEEEchHHhhhcchhHHHHHHHHHHhcCcEEEecCCeEEEECCCCCCCCccccCcCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987899984 999999999
Q ss_pred HHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 481 AMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 481 ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
||+|++|++ +.++++|+|++|++||||+||++|++|+++
T Consensus 388 aMa~aia~l~~~~~v~I~~~~~v~kSfP~F~~~l~~l~~~ 427 (428)
T COG0128 388 AMAFAVAGLLSEGGVRIDDAECVAKSFPGFFEDLASLGAR 427 (428)
T ss_pred HHHHHHHHhhcCCCEEEcCccceeccCchHHHHHHHhhCC
Confidence 999999997 566799999999999999999999999875
No 2
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=100.00 E-value=8.2e-76 Score=625.41 Aligned_cols=439 Identities=87% Similarity=1.331 Sum_probs=386.6
Q ss_pred EEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCcc
Q 010070 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFP 159 (519)
Q Consensus 80 ~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~ 159 (519)
++|.|.++++|+|++|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++++++++...++|+|.++.++
T Consensus 4 ~~v~~~~~~~g~i~~p~sKs~~~r~l~~a~la~~~s~i~~~~~~~D~~~~~~~l~~lG~~~~~~~~~~~~~i~~~~~~~~ 83 (443)
T PLN02338 4 ITLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTLGLNVEEDSENNRAVVEGCGGKFP 83 (443)
T ss_pred eEecCCCccceEEEcCCcHHHHHHHHHHHHhCCCCEEEcCCCcCHHHHHHHHHHHHcCCeEEecCCCCeEEEEecCCCcC
Confidence 67778788999999999999999999999999999999999999999999999999999999865445788998875444
Q ss_pred ccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCC
Q 010070 160 LAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKG 239 (519)
Q Consensus 160 ~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~ 239 (519)
.+........|++||||+++|+|++++++++++++++++|+++|++|||.+|+++|++||++|+..++.+++|++|+|++
T Consensus 84 ~~~~~~~~~~i~~g~sgt~~r~l~~~~~~~~~~~~~~~~g~~~l~~Rp~~~l~~~L~~lGa~i~~~~~~~~~pi~i~g~~ 163 (443)
T PLN02338 84 VSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCPPVRVNAAG 163 (443)
T ss_pred CcccccccceEEcCCcchHHHHHHHHHHhCCCCceEEEECChhhccCCchHHHHHHHHCCCEEEEcCCCCcCCEEEECCC
Confidence 32100012479999999999999999887555689999999999999999999999999999987555567899999865
Q ss_pred CCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCC
Q 010070 240 GLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319 (519)
Q Consensus 240 ~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~ 319 (519)
++++++++++|++|+||++++++||++++|+++|++.+...++||++.|+++|++||++|+..++...|+|+|++.|+.+
T Consensus 164 ~l~~~~~~i~g~~Ssq~~sall~aa~~~~g~~~I~~~~~~~s~p~~~~tl~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~ 243 (443)
T PLN02338 164 GLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFIKGGQKYKSP 243 (443)
T ss_pred CCCCceEEECCCCchHHHHHHHHHHhcCCCCcEEEECCCCCCccHHHHHHHHHHHcCCeEEecCCceEEEEcCCccccCC
Confidence 68889999999999999999999999999999999876666899999999999999999987654346889876556545
Q ss_pred ccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcceeEE
Q 010070 320 GNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 399 (519)
Q Consensus 320 ~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~v 399 (519)
.++.+++|++++++|++++++++|+++++|+...+.|+|..+++.|++||+++++.++.++|.+.+....+...++++++
T Consensus 244 ~~~~i~~D~ssa~~~la~a~~~~g~v~i~~~~~~~~~~d~~~l~~L~~mGa~v~~~~~~i~i~~~~~~~~~~~~l~~~~~ 323 (443)
T PLN02338 244 GNAYVEGDASSASYFLAGAAITGGTVTVEGCGTTSLQGDVKFAEVLEKMGAKVEWTENSVTVTGPPRDAFGGKHLKAIDV 323 (443)
T ss_pred CeEEeCCCHHHHHHHHHHHHhcCCeEEECCCCCCCCcchhHHHHHHHHcCCeEEEcCCeEEEcCCcccccccCCccceEE
Confidence 67889999999999999999999999999999888888888999999999999998888988765321111124788999
Q ss_pred eCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccEEecCccHH
Q 010070 400 NMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHR 479 (519)
Q Consensus 400 ~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~i~~~~Dhr 479 (519)
+++++||++|+|+++|++++|+++|+|++++|+|||||+++++++|++||+++++++|.+.|+|++.+++.++++++|||
T Consensus 324 d~~~~~d~~~~la~aa~~a~g~s~I~~~~~lr~kesdR~~~~~~~L~~lGa~i~~~~d~l~I~g~~~l~g~~i~~~~DhR 403 (443)
T PLN02338 324 NMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCIITPPKKLKPAEIDTYDDHR 403 (443)
T ss_pred CcccChhHHHHHHHHHHhCCCcEEEeCchhhcccchHHHHHHHHHHHHcCCEEEEeCCEEEEECCCCCCCCeEECCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986678999999999999
Q ss_pred HHHHHHHHHcCCCCEEEeCCcccccccccHHHHHHhccc
Q 010070 480 MAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 518 (519)
Q Consensus 480 ~ama~~laa~~~~~v~I~n~~~v~ks~p~F~~~L~~lg~ 518 (519)
+||+|++||++.++++|+|++|++||||+||+.|++|.+
T Consensus 404 ~ama~ala~l~~~~~~i~~~~~v~ks~P~f~~~l~~~~~ 442 (443)
T PLN02338 404 MAMAFSLAACGDVPVTINDPGCTRKTFPTYFDVLESIAK 442 (443)
T ss_pred HHHHHHHHHHcCCCEEEecCCeeeccCccHHHHHHHHhh
Confidence 999999999877889999999999999999999999865
No 3
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=3.3e-75 Score=646.82 Aligned_cols=435 Identities=53% Similarity=0.844 Sum_probs=382.5
Q ss_pred cccccCcceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEE
Q 010070 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAI 150 (519)
Q Consensus 71 ~~~~~~~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~ 150 (519)
+...++|..++|+|.++++|+|++|||||++||+|++|+|++|+++|+|++.++|+..++++|++||++|++++ ..++
T Consensus 234 ~~~~~~m~~~~v~~~~~l~G~i~vpgsKS~s~R~l~~AaLa~g~s~i~~~l~s~D~~~~~~aL~~lGa~i~~~~--~~~~ 311 (673)
T PRK11861 234 SGTGSHMEHLDLGPFSHAQGTVRLPGSKSISNRVLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLSRDG--GTCV 311 (673)
T ss_pred cccCCccceEEEcCCCccceEEEcCCcHHHHHHHHHHHHhcCCCEEEcCCCCCHHHHHHHHHHHHcCCeEEecC--CEEE
Confidence 33556788899999888999999999999999999999999999999999999999999999999999998765 3688
Q ss_pred EEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCc
Q 010070 151 VEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNC 230 (519)
Q Consensus 151 I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~ 230 (519)
|+|.++.+..+ ...+++||||+++|+|+++++. .++.++|+|+++|++|||.+|+++|++||++++..++.++
T Consensus 312 I~g~~~~~~~~-----~~~i~~g~sGt~~r~L~~~~a~--~~g~~~i~G~~~L~~RPi~~ll~~L~~lGa~v~~~~~~~~ 384 (673)
T PRK11861 312 VGGTRGAFTAK-----TADLFLGNAGTAVRPLTAALAV--NGGEYRIHGVPRMHERPIGDLVDGLRQIGARIDYEGNEGF 384 (673)
T ss_pred EEcCCCCcCCC-----CceEecCCcchHHHHHHHHHHc--CCCeEEEECChhhccCChhHHHHHHHHCCCcEEeCCCCCC
Confidence 88876444433 3568999999999999998876 3567889999999999999999999999999987655567
Q ss_pred CcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCC---CeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeE
Q 010070 231 PPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLAL---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 307 (519)
Q Consensus 231 ~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~---g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~ 307 (519)
+|++|+|.+-..++.+++++++|+||+|++||++++.. +.++|+..+...++||+++|+++|++||++|+..+. ..
T Consensus 385 ~p~~I~g~~~~~~~~~~v~g~~Ssq~iSalLlaa~~l~a~~~~~~i~~~g~~~S~pyv~~t~~~L~~fG~~V~~~~~-~~ 463 (673)
T PRK11861 385 PPLRIRPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGASVVEIDGELISKPYIEITIKLMARFGVTVERDGW-QR 463 (673)
T ss_pred CCEEEECCCcCCCCeEEeCCCccHHHHHHHHHHhHhhccCCCCEEEEECCccCCcCHHHHHHHHHHHCCCEEEEcCC-cE
Confidence 89999986322467899999999999999999998653 566677655456899999999999999999987653 36
Q ss_pred EEEecCCcccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCC
Q 010070 308 FFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRD 387 (519)
Q Consensus 308 i~I~g~~~l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~ 387 (519)
|+|++++.|..+.++.+++|+++++||++++++++|+++|+|+..++.|+|..++++|++||++|++.++.++|.+...
T Consensus 464 i~V~~~~~~~~~~~~~V~~D~SsAa~~laaAal~~g~v~I~g~~~~~~q~d~~i~~iL~~mGa~i~~~~~~i~i~~~~~- 542 (673)
T PRK11861 464 FTVPAGVRYRSPGTIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDWIEVRGIGH- 542 (673)
T ss_pred EEEcCCcccCCCceeECCCChHHHHHHHHHHHhcCCeEEECCCCCCCCchHHHHHHHHHHcCCcEEEeCCeEEEeeccc-
Confidence 8888765564356899999999999999999999999999999999999998899999999999999988888875211
Q ss_pred CCCCCCcceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCc
Q 010070 388 PYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKL 467 (519)
Q Consensus 388 ~~~~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l 467 (519)
.. ..+++.++|...+||++|+|+++|++++|+++|+|+.++|+|||||+.+++++|++||+++++.+|+++|+|+..+
T Consensus 543 ~~--~~l~~~~iD~~~~pDl~p~laalaa~a~G~s~I~~v~~lr~KEsdRi~a~~~eL~klGa~v~~~~d~l~I~g~~~l 620 (673)
T PRK11861 543 DH--GRLAPIDMDFNLIPDAAMTIAVAALFADGPSTLRNIGSWRVKETDRIAAMATELRKVGATVEEGADYLVVTPPAQL 620 (673)
T ss_pred cC--CCccceeeccccCchHHHHHHHHHHhCCCCEEEECccccccccchHHHHHHHHHHHcCCEEEEeCCeEEEECCCCC
Confidence 00 2488999999999999999999999999999999999999999999999999999999999999999999997678
Q ss_pred cc-cEEecCccHHHHHHHHHHHcCCCCEEEeCCcccccccccHHHHHHhccc
Q 010070 468 KV-AAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 518 (519)
Q Consensus 468 ~~-~~i~~~~Dhr~ama~~laa~~~~~v~I~n~~~v~ks~p~F~~~L~~lg~ 518 (519)
++ +++++|+|||+||+|+++++..++++|+|++||+||||+||++|++||.
T Consensus 621 ~~~~~v~s~~DHRiaM~~av~~l~~~~~~i~~~~~v~kS~P~F~~~~~~l~~ 672 (673)
T PRK11861 621 TPNASIDTYDDHRMAMCFSLVSLGGVPVRINDPKCVGKTFPDYFDRFLALAN 672 (673)
T ss_pred CCCceEECCCCHHHHHHHHHHHhCCCCEEEecCCeeeccCccHHHHHHHHhc
Confidence 86 8899999999999999999977789999999999999999999999985
No 4
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=100.00 E-value=3.1e-73 Score=629.37 Aligned_cols=425 Identities=56% Similarity=0.880 Sum_probs=378.8
Q ss_pred cceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCC
Q 010070 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (519)
Q Consensus 77 ~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g 156 (519)
|..+.|.|...+.|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++|++++ ..++|+|+++
T Consensus 4 ~~~~~v~p~~~l~G~i~~pgsKs~s~R~l~lAaLa~g~s~i~~~l~s~D~~~~l~aL~~LGa~i~~~~--~~i~I~g~g~ 81 (661)
T PRK11860 4 TEFLDLPPLLSAGGTVRLPGSKSISNRVLLLAALSEGTTTVRDLLDSDDTRVMLDALRALGCGVEQLG--DTYRITGLGG 81 (661)
T ss_pred ccceeecCCCcccEEEEcCCCHHHHHHHHHHHHhCCCCEEEccCCccHHHHHHHHHHHHcCCEEEecC--CEEEEECCCC
Confidence 44567888778999999999999999999999999999999999999999999999999999998865 3688998764
Q ss_pred CccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEE
Q 010070 157 LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 236 (519)
Q Consensus 157 ~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~ 236 (519)
.++.+ ...+++||||+++|+|+++++. .++.++|+|+.+|++|||.+|+++|++||++++..+..+++|++|+
T Consensus 82 ~l~~~-----~~~i~~g~sGtt~r~Ll~~~al--~~g~~~i~g~~~L~~RP~~~Ll~~L~~lGa~v~~~~~~g~~pi~I~ 154 (661)
T PRK11860 82 QFPVK-----QADLFLGNAGTAMRPLTAALAL--LGGEYELSGVPRMHERPIGDLVDALRQLGCDIDYLGNEGFPPLRIG 154 (661)
T ss_pred CcCCC-----CceEEeCCchHHHHHHHHHHHc--CCCeEEEECCchhhcCChHHHHHHHHHCCCEEEEcCCCCcccEEEE
Confidence 44332 3578999999999999987765 3578899999999999999999999999999987554567899999
Q ss_pred cCCCCC-ceEEEEcCCCCHHHHHHHHHHhhcCC-CeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCC
Q 010070 237 GKGGLP-GGKVKLSGKLSSQYLTALLMAAPLAL-GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314 (519)
Q Consensus 237 g~~~l~-~~~i~l~gd~Ssq~~salllAA~la~-g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~ 314 (519)
++ ++. ++++++++|+||||+|++||||+++. ++++|++.+...+++|+++|+++|++||++|+..+. ..|+|.+++
T Consensus 155 g~-~l~~g~~i~i~gd~SSq~~SalLlAA~~~~g~~~~I~~~~~~~s~~~i~~t~~~L~~~G~~v~~~~~-~~i~v~~~~ 232 (661)
T PRK11860 155 PA-PLRLDAPIRVRGDVSSQFLTALLMALPLVARRDITIEVVGELISKPYIEITLNLLARFGIAVQREGW-QRFTIPAGS 232 (661)
T ss_pred CC-CcCCCceEEEcCCCcHHHHHHHHHHHHhCCCCCeEEEeCCCCCCCCHHHHHHHHHHHCCCEEEecCC-cEEEEcCCc
Confidence 75 676 78999999999999999999999887 568898876666889999999999999999987543 468888766
Q ss_pred cccCCccccccCChhhHHHHHHHHHhcCC-eEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCC
Q 010070 315 KYKSPGNAFVEGDASSASYFVAGAAVTGG-TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKH 393 (519)
Q Consensus 315 ~l~~~~~~~i~~D~~~a~~~la~aa~~~g-~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~ 393 (519)
+|+.+.++.+++|+++++||++++++++| +++++|+..+++|+|..++++|++||+++++.+++++|.+.+ ..
T Consensus 233 ~l~~~~~~~V~~D~s~a~~l~aaaa~~~G~~v~i~~v~~~~~q~d~~il~~L~kmGa~i~~~~~~i~i~~~~------~~ 306 (661)
T PRK11860 233 RYRSPGEIHVEGDASSASYFIAAGAIAGGAPVRIEGVGRDSIQGDIRFAEAARAMGAQVTSGPNWLEVRRGA------WP 306 (661)
T ss_pred ccCCCceeEcCCCHHHHHHHHHHHHhCCCCeEEECCCCCCCCccHHHHHHHHHHcCCEEEEeCCEEEEEecC------CC
Confidence 66434578899999999999999999988 999999999999988899999999999999999999998642 24
Q ss_pred cceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCC---cccc
Q 010070 394 LRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEK---LKVA 470 (519)
Q Consensus 394 l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~---l~~~ 470 (519)
++|.+++++++||++|+|+++|++++|+++|+|++++|+|||||+.+++++|++||+++++.+|++.|+|+.. ++|+
T Consensus 307 l~g~~id~~~~pdi~p~Lavla~~a~G~s~I~~v~~lr~KEsdRi~~~~~~L~~LGa~i~~~~d~l~I~g~~~~~~~~g~ 386 (661)
T PRK11860 307 LKAIDLDCNHIPDAAMTLAVMALYADGTTTLRNIASWRVKETDRIAAMATELRKLGATVEEGADYIRVTPPAQAADWKAA 386 (661)
T ss_pred CcceEEcCcCChHHHHHHHHHHHhCCCcEEEeChhHhhhchhhHHHHHHHHHHHCCCEEEEeCCeEEEECCCcccCCCCc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999998533 7888
Q ss_pred EEecCccHHHHHHHHHHHcC--CCCEEEeCCcccccccccHHHHHHhccc
Q 010070 471 AIDTYDDHRMAMAFSLAACA--DVPVTIKDPSCTRKTFPDYFDVLDSVTK 518 (519)
Q Consensus 471 ~i~~~~Dhr~ama~~laa~~--~~~v~I~n~~~v~ks~p~F~~~L~~lg~ 518 (519)
++++|+|||+||||++||+. +.+++|+|++|++|+||+||+.|++||.
T Consensus 387 ~v~s~~DHRiaMa~~va~l~~~~~~v~I~~~~~v~ksyP~F~~~l~~Lg~ 436 (661)
T PRK11860 387 AIHTYDDHRMAMCFSLAAFNPAGLPVRINDPKCVAKTFPDYFEALFSVAQ 436 (661)
T ss_pred cccCCccHHHHHHHHHHHHcCCCCCEEEeccCeeecCCCChHHHHHHhcC
Confidence 99999999999999999985 6689999999999999999999999973
No 5
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=100.00 E-value=1.3e-73 Score=603.89 Aligned_cols=412 Identities=40% Similarity=0.644 Sum_probs=355.2
Q ss_pred EccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEc-CCcceEEEEcCCCCccc
Q 010070 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED-FAMKRAIVEGCGGLFPL 160 (519)
Q Consensus 82 i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~-~~~~~l~I~g~~g~~~~ 160 (519)
|++.++++|+|++|||||+++|+|++|+|+.|+++|+|++.++|+..++++|++||++|++. ++...+++.|.++.+..
T Consensus 1 v~~~~~l~G~v~~pgsKs~s~rali~AaLa~g~s~i~n~~~~~Dv~~~~~~l~~lG~~i~~~~~~~~~~~~~g~~~~~~~ 80 (419)
T PF00275_consen 1 VEKPSPLSGTVRVPGSKSNSHRALIAAALAEGESRIRNVPDSDDVEATIDALRALGAKISWDEENGDTVIISGNGGSFSS 80 (419)
T ss_dssp EESSSEEEEEEE--B-HHHHHHHHHHHHHGBSEEEEES---SHHHHHHHHHHHHTT-EEEEEECTSEEEEEETTSTTCEE
T ss_pred CCCCCceeEEEEeCCccHHHHHHHHHHHHhcCCCeEEECCchHHHHHHHHhhcccCceeEEeeccceEEEeccccccccc
Confidence 56778999999999999999999999999999999999999999999999999999999775 34467888885544544
Q ss_pred cccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCC
Q 010070 161 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGG 240 (519)
Q Consensus 161 ~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~ 240 (519)
+ ....+++|+||+++|+|++.++. .++.+.++|+++|++||+++++++|++||+++++.++++++|++|+|
T Consensus 81 ~----~~~~i~~g~Sgt~lr~L~~~~~~--~~~~~~~~G~~~l~~RP~~~l~~~L~~lGa~i~~~~~~~~~pi~i~~--- 151 (419)
T PF00275_consen 81 P----EDIVIDVGNSGTTLRFLLALLAL--APGPVTFTGDCSLGKRPMDPLLDALRQLGARISYLNGEGFLPIRIRG--- 151 (419)
T ss_dssp S----HHHHEEECCGHHHHHHHHHHHSE--ESSEEEEECSBTGGGSTCHHHHHHHHHTTEEEEEETTEEEEEECEEE---
T ss_pred c----cccceeeccChhHHhHHHHHHhe--eeEEEEEeccchhhhCCHHHHHHHHhhCCCEEEEecCCceEEEEEee---
Confidence 3 13478999999999999998775 35789999999999999999999999999999998766788999998
Q ss_pred CCceEEEEcCCCCHHHHHHHHHHhh-cCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCc-ccC
Q 010070 241 LPGGKVKLSGKLSSQYLTALLMAAP-LALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK-YKS 318 (519)
Q Consensus 241 l~~~~i~l~gd~Ssq~~salllAA~-la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~-l~~ 318 (519)
..++.++++++.||||++++||+|+ ++.|+++|. + ..++||+++|+++|++||++|+..++.+.|+|+|.+. +.
T Consensus 152 ~~~~~~~i~~~~sSq~vs~lll~A~~~a~g~i~i~--~-~~s~p~i~~t~~~L~~~G~~i~~~~~~~~~~i~g~~~~~~- 227 (419)
T PF00275_consen 152 LKGGPIEIDGDISSQFVSALLLAAALLARGEITII--N-PASEPYIDMTIDMLKKFGAKIEVDGDENIISIPGGQYILP- 227 (419)
T ss_dssp SSSBEEEEETSSSHHHHHHHHHHHHTTSBSEEEEE--S-ESSSHHHHHHHHHHHHTT-EEEETTSTTEEEEETTSSBBB-
T ss_pred cccCcEEEeccCCCHHHHHHHHHHHHhcCCceEEe--C-CCCCCcHHHHHHHHhhceEEEEEccCCcEEEEEecccccc-
Confidence 5678899999999999999888887 556766665 3 5688999999999999999999965555799999876 43
Q ss_pred CccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHH-HHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccee
Q 010070 319 PGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAE-VLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAV 397 (519)
Q Consensus 319 ~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~-~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~ 397 (519)
..++.+|+|+++|+||++++++++|+++|+|+..++.|+|..+++ +|++||++|++.++...+.+.. .+++.
T Consensus 228 ~~~~~v~~D~s~Aa~~l~aa~l~~g~v~i~~~~~~~~~gd~~~l~~iL~~mG~~i~~~~~~~~~~~~~-------~~~~~ 300 (419)
T PF00275_consen 228 GCEYTVPGDWSSAAFFLAAAALTGGEVTIKNLPPNSLQGDKEFLDDILRRMGAKIEEEDDGVIVVGGS-------GLRGI 300 (419)
T ss_dssp SEEEE--B-HHHHHHHHHHHHHCTTEEEEESEEGGGGHHHHHHHHHHHHHTTEEEEEESEEEEEEEET-------TSBEB
T ss_pred ceeEEecCCHHHHHHHHHHHheeCcEEEEEecCchhhhhhHHHHHHHHHHhCCCcccCCCeeEEEecc-------ccccc
Confidence 458999999999999999999999999999999999999988888 9999999999998665554432 47888
Q ss_pred EEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCC-CccccEEecCc
Q 010070 398 DVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPE-KLKVAAIDTYD 476 (519)
Q Consensus 398 ~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~-~l~~~~i~~~~ 476 (519)
++++.++||..|++++++++++|++++.|+.++|.|||||+.+++++|++||+++++.+|.++|+|.. +++|+++++|+
T Consensus 301 ~~di~~~pd~~p~l~~~a~~a~g~t~~~g~~~lr~kesdR~~~~~~~L~klG~~~~~~~d~l~i~~~~~~~~g~~v~s~~ 380 (419)
T PF00275_consen 301 EIDISDAPDLAPTLAVLAAFAEGETRISGVSHLRDKESDRIEAIVEELRKLGADIEEDGDGLIIHGGRPPLKGAEVDSYN 380 (419)
T ss_dssp EEEEEBCSTTCHHHHHHHHHHHHHEEEESEEEEEGSSSTTHHHHHHHHHHTTSEEEEETTEEEEEEESE-CBSEEEE-TT
T ss_pred ccccccCccchhHHHHHHHHhhcceeccccceeeeehHhhHHHHHHHHhhcCCCEEEECCEEEEECCccCCCCcEEEecH
Confidence 99999999999999999999999999999999999999999999999999999999999999998765 58999999999
Q ss_pred cHHHHHHHHHHHc-CCC-CEEEeCCcccccccccHHHHH
Q 010070 477 DHRMAMAFSLAAC-ADV-PVTIKDPSCTRKTFPDYFDVL 513 (519)
Q Consensus 477 Dhr~ama~~laa~-~~~-~v~I~n~~~v~ks~p~F~~~L 513 (519)
|||+||+|++||+ +.+ +++|+|++|++|+||+||++|
T Consensus 381 DhRiaMa~~va~l~~~g~~~~I~~~~~v~ksyP~F~~~L 419 (419)
T PF00275_consen 381 DHRIAMALAVAALAAKGEPITIENAECVSKSYPNFWEDL 419 (419)
T ss_dssp SHHHHHHHHHHHHHSBSSEEEEETTHHHHHTSTTHHHHH
T ss_pred HHHHHHHHHHHhcccCCCeEEEcccceEeccCcChHhhC
Confidence 9999999999996 677 899999999999999999987
No 6
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=100.00 E-value=3.7e-68 Score=561.46 Aligned_cols=407 Identities=47% Similarity=0.716 Sum_probs=360.8
Q ss_pred EEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCceE
Q 010070 90 GTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIE 169 (519)
Q Consensus 90 G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~~~ 169 (519)
|+|++|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++|++++ ..++|+|.+.. .+ ...
T Consensus 1 g~i~~p~sKs~~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~l~~lG~~i~~~~--~~~~i~g~~~~--~~-----~~~ 71 (409)
T TIGR01356 1 GEIRAPGSKSITHRALILAALAEGETRVRNLLRSEDTLATLDALRALGAKIEDGG--EVAVIEGVGGK--EP-----QAE 71 (409)
T ss_pred CeEECCCCHHHHHHHHHHHHhCCCCEEECCCCcCHHHHHHHHHHHHcCCEEEecC--CEEEEEccCCC--CC-----CCE
Confidence 6899999999999999999999999999999999999999999999999999765 47899987642 22 347
Q ss_pred EEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEEEEc
Q 010070 170 LFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (519)
Q Consensus 170 l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l~ 249 (519)
+++|+||+++|||+++++. .+++++++|+++|++||+.+++++|++||++++..++++++|++|+++ +.++.++++
T Consensus 72 i~~g~sgt~~r~l~~l~a~--~~~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~~~~~~~~~p~~i~~~--~~~~~~~i~ 147 (409)
T TIGR01356 72 LDLGNSGTTARLLTGVLAL--ADGEVVLTGDESLRKRPMGRLVDALRQLGAEISSLEGGGSLPLTISGP--LPGGIVYIS 147 (409)
T ss_pred EEecCchHHHHHHHHHHHc--CCCeEEEECCcccccCCcHHHHHHHHHCCCEEEEcCCCCcCCEEEecC--CCCCeEEeC
Confidence 8999999999999998876 357899999999999999999999999999998865556789999974 456788999
Q ss_pred CCCCHHHHHHHHHHhhcCCCeEEEEEcC-CCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccCCh
Q 010070 250 GKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDA 328 (519)
Q Consensus 250 gd~Ssq~~salllAA~la~g~~~I~~~~-~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~D~ 328 (519)
++.|+||+++++|+++ ..+...+...+ ...+++|++.++++|++||++|+..++ ..++|+|.+.++ +.++.+++|+
T Consensus 148 ~~~S~q~~salllaa~-~~~~~~~~~~~~~~~~~~~i~~~l~~L~~~G~~i~~~~~-~~i~I~g~~~l~-~~~~~i~~D~ 224 (409)
T TIGR01356 148 GSASSQYKSALLLAAP-ALQAVGITIVGEPLKSRPYIEITLDLLGSFGVEVERSDG-RKIVVPGGQKYG-PQGYDVPGDY 224 (409)
T ss_pred CCcchHHHHHHHHhcc-ccCCCeeEEecCCCCCcCHHHHHHHHHHHCCcEEEEcCC-cEEEECCCCccC-CCeeECCCCH
Confidence 9999999999999986 43334444443 455788999999999999999987654 478898876676 6789999999
Q ss_pred hhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcceeEEeCCCCCcHH
Q 010070 329 SSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVA 408 (519)
Q Consensus 329 ~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~v~~~~~pd~~ 408 (519)
+++++|++++++++|+++|+|+...+.+.|..+++.|++||+++++.++.++|.+.. .+++++++..++||++
T Consensus 225 ssa~~ll~aa~l~~g~i~i~~~~~~~~~~~~~~~~~L~~~Ga~i~~~~~~i~v~~~~-------~l~~~~~~~~d~~d~~ 297 (409)
T TIGR01356 225 SSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIEVEEDDLIVEGAS-------GLKGIKIDMDDMIDEL 297 (409)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCCCCCcHHHHHHHHHcCCeEEEeCCeEEEEecC-------CCccEEEECCCChhHH
Confidence 999999999999888999999988888877778999999999999988889887642 4788899988999999
Q ss_pred HHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccEEecCccHHHHHHHHHHH
Q 010070 409 MTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAA 488 (519)
Q Consensus 409 ~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~i~~~~Dhr~ama~~laa 488 (519)
|+++++|++++|+++|+|+.++|+|||||+..+.++|++||+++++.+|.+.|+|+++++|.+|++++|||++|+|+++|
T Consensus 298 ~~l~~~aa~a~g~~~i~~~~~~~~~e~dr~~~~~~~L~~~G~~i~~~~d~i~i~g~~~l~g~~i~~~~d~r~am~lav~a 377 (409)
T TIGR01356 298 PTLAVLAAFAEGVTRITGAEELRVKESDRIAAIAEELRKLGVDVEEFEDGLYIRGKKELKGAVVDTFGDHRIAMAFAVAG 377 (409)
T ss_pred HHHHHHHHhCCCCEEEEChhHhhhcccHHHHHHHHHHHHcCCEEEEeCCeEEEECCCCCCCCeeeCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987678899999999999999999999
Q ss_pred c-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 489 C-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 489 ~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
+ +.++++|+|++|++|+||+||++|++||++
T Consensus 378 ~~~~g~~~I~n~~~v~~s~p~f~~~l~~lg~~ 409 (409)
T TIGR01356 378 LVAEGEVLIDDPECVAKSFPSFFDVLERLGAN 409 (409)
T ss_pred hcCCCCeEEcCcCeeeccCchHHHHHHHhhCC
Confidence 7 577899999999999999999999999975
No 7
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-68 Score=534.69 Aligned_cols=506 Identities=73% Similarity=1.104 Sum_probs=432.0
Q ss_pred ccccccccccccccccCCccC----CCCCccceeeeccc----CCCCCCcccccccCccCCCcceeeeEEEeeecccccc
Q 010070 3 QVSKICNGIQNTRVFTNQTKL----QKPKSVSAISFRSQ----SRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQ 74 (519)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (519)
+++. ..|++....-.+++|+ ..|-|.....+... +.+-+..|..+.......|.+..++.+.+++.++++.
T Consensus 15 eLSr-~lGiLsPtsVarLsKiLvr~~lp~Spdsss~k~~s~~r~~pfsk~~~~~s~d~~n~GS~~r~V~vea~~~taeKa 93 (595)
T KOG0692|consen 15 ELSR-YLGILSPTSVARLSKILVRYSLPFSPDSSSPKLRSVPRKVPFSKSWGLKSSDKKNVGSEKRPVKVEASVSTAEKA 93 (595)
T ss_pred HHHH-hhCcCCHHHHhhhhHHHHhcCCCCCCCccchhhhcccccCchHHHHhhhhhhhhccccccccEEEeecchhhhhc
Confidence 4444 5666666666666665 22333333333322 2244567777777777777788899999998888884
Q ss_pred cCcceEEEcc-CCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEE-EEcCCcceEEEE
Q 010070 75 SKASEIVLQP-IREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNV-EEDFAMKRAIVE 152 (519)
Q Consensus 75 ~~~~~~~i~p-~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v-~~~~~~~~l~I~ 152 (519)
+ .+...| .+.+.+.|.+||||++++|++++|++.+|.++++|+++++|+..|+.+|+.||..+ .|+++ +++.++
T Consensus 94 s---~iV~~pdir~i~~~i~~pgSKs~snralllaa~~eg~~~~~n~L~sddt~~m~sal~~L~~~~~~we~~-~~~vve 169 (595)
T KOG0692|consen 94 S---EIVLQPDIREISGLIKLPGSKSLSNRALLLAALSEGTTVVDNLLNSDDTNYMLSALKTLGLNVETWEEN-NRAVVE 169 (595)
T ss_pred c---hhhcChhHHHhhceeeCCCCchhhhhHHHHHHHhccceeccccccccchhhhhhhHHHhccccceecCC-CEEEEE
Confidence 4 567778 47788999999999999999999999999999999999999999999999999665 57665 599999
Q ss_pred cCCCCccccccCCCceEEEeCCchhhhhHHH---HHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCC
Q 010070 153 GCGGLFPLAKQQTGEIELFLGNAGTAMRPLT---AAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTN 229 (519)
Q Consensus 153 g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~---a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~ 229 (519)
|+|+.+..... ...++++||.|+.+|+|+ +++.+.+++..++|+|..++++||+.+|++.|+|.|++|++..+++
T Consensus 170 G~gg~~~~~~~--~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rPi~~LV~~l~q~GadI~~~~~t~ 247 (595)
T KOG0692|consen 170 GCGGEFSIDSK--SDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERPIGDLVVGLKQLGADIECTLGTN 247 (595)
T ss_pred cCCCeeeechh--hhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCCchHHHHHHHhcCCceEEeccCC
Confidence 99975533211 134899999999999998 5555555555689999999999999999999999999999999999
Q ss_pred cCcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcC-CCCChhHHHHHHHHHHHcCCEEEEeCceeEE
Q 010070 230 CPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLMERFGVFVEHSDSWDRF 308 (519)
Q Consensus 230 ~~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~-~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i 308 (519)
++|+.+...+.++++.+++.|.+|+||.++++|+|+++.|.++|..++ .+.|.||+++|+++|+.||+.+++.+.|..+
T Consensus 248 ~~p~dv~~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~mt~~lme~fgvn~~~s~~~~~~ 327 (595)
T KOG0692|consen 248 CPPVDVNANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVPYVEMTLKLMERFGVNVEHSTSWDRF 327 (595)
T ss_pred CCceeeeccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCccccccchhHHHHHHHHhCcCeEecCCCcce
Confidence 999999977789999999999999999999999999999999999987 6779999999999999999999998888788
Q ss_pred EEecCCcccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCC
Q 010070 309 FIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDP 388 (519)
Q Consensus 309 ~I~g~~~l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~ 388 (519)
.+.++++|+.|.++.|++|.+++.||++.+++++-++++.|++..++|+|..|.+.|+.||+++.+..+++++.|+|..-
T Consensus 328 y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~vl~pmgc~v~qt~~svtv~gp~~ga 407 (595)
T KOG0692|consen 328 YVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAEVLEPMGCKVSQTENSVTVTGPPRGA 407 (595)
T ss_pred EeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccchHhhhccccceeeeecccccccCCCCCc
Confidence 88888899989999999999999999999999999999999999999999999999999999999999999999987644
Q ss_pred CCCCCcceeEEeCCCCCcHHHHHHHHHHcC-----CCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcC
Q 010070 389 YGRKHLRAVDVNMNKMPDVAMTLAVVALFA-----DGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITP 463 (519)
Q Consensus 389 ~~~~~l~g~~v~~~~~pd~~~~Lavaa~~a-----~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g 463 (519)
.+-++++.+++ +...+|.++++++.|+++ +++|+|+++..+|+|||+|+.+++.+|+|||+.+++.+|++.|.+
T Consensus 408 ~~~~~lr~iD~-m~~m~d~~~t~svvA~~~~~~s~gdptti~~~as~rvket~r~ia~~~el~klg~~~~E~~dg~~v~~ 486 (595)
T KOG0692|consen 408 FGMRHLRAIDV-MNKMPDVAMTLSVVALFAGLRSSGDPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDGYCVIT 486 (595)
T ss_pred ccceehhhhcc-cccccchhHhHhHHHHhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhcccccccCceEEEeC
Confidence 44445666666 677899999999999999 899999999999999999999999999999999999999877776
Q ss_pred C--CCccccEEe---cCccHHHHHHHHHHH-cCCCCEEEeCCcccccccccHHHHHHhc
Q 010070 464 P--EKLKVAAID---TYDDHRMAMAFSLAA-CADVPVTIKDPSCTRKTFPDYFDVLDSV 516 (519)
Q Consensus 464 ~--~~l~~~~i~---~~~Dhr~ama~~laa-~~~~~v~I~n~~~v~ks~p~F~~~L~~l 516 (519)
+ +.|+-++.+ +|+|||+||+|+++| ++..+++|.++.|..|+||+||++|.+.
T Consensus 487 ~~~k~lk~ae~~g~~TydDhr~am~fsvLA~~~~~~~~i~d~~ct~kt~p~y~~Vl~~~ 545 (595)
T KOG0692|consen 487 PPEKKLKLAEIDGSLTYDDHRMAMAFSVLAACADVPITINDPGCTRKTFPDYFQVLERI 545 (595)
T ss_pred CchHhccchhhccccccccccchhhhhHHHhccCCCccccCCCccccccchHHHHHHHH
Confidence 5 346666666 899999999999555 6788899999999999999999999874
No 8
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=100.00 E-value=3.8e-63 Score=523.10 Aligned_cols=403 Identities=31% Similarity=0.483 Sum_probs=357.5
Q ss_pred eeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCC-ccccccCCC
Q 010070 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGL-FPLAKQQTG 166 (519)
Q Consensus 88 l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~-~~~~~~~~~ 166 (519)
++|+|++|||||+++|+|++|++++|+++|+|++.++|+..++++|++||++|++++ ..++|.|.+.. +..+
T Consensus 1 ~~G~v~i~gskS~~~~~L~~a~la~g~~~i~~~~~~~dv~~t~~~L~~lG~~i~~~~--~~~~v~g~~~~~~~~~----- 73 (408)
T cd01554 1 LHGIIRVPGDKSISHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKD--GVITIQGVGMAGLKAP----- 73 (408)
T ss_pred CceEEEcCCchHHHHHHHHHHHhCCCcEEEeCCCccHHHHHHHHHHHHcCCeEEecC--CEEEEEecCCCCCCCC-----
Confidence 479999999999999999999999999999999999999999999999999999865 47888887532 2222
Q ss_pred ceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEE
Q 010070 167 EIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKV 246 (519)
Q Consensus 167 ~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i 246 (519)
...+++|+||+++|+++++++. .++++.++|+++++.||+..++++|++||+++++.++.+.+|+.+.+ +++++++
T Consensus 74 ~~~~~~g~s~~~~~~l~a~~~~--~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~~~~~~~~~~~~~~--~~~~~~i 149 (408)
T cd01554 74 QNALNLGNSGTAIRLISGVLAG--ADFEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEERDLPPLLKGG--KNLGPIH 149 (408)
T ss_pred CceEEccCccHHHHHHHHHHHc--CCCeEEEECCchhhcCChHHHHHHHHHCCCEEEECCCCCcCCEEEec--CCCCCeE
Confidence 2368899999999999998765 35689999999999999999999999999999986655567887754 4788899
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccC
Q 010070 247 KLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEG 326 (519)
Q Consensus 247 ~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~ 326 (519)
++++++|+|++++++++|+++.|+++|++. .+++|++.|+++|++||++|+..+ ++.++|+|.+.++ +.++.+++
T Consensus 150 ~~~~~~s~q~~~~ll~aa~~~~g~~~i~~~---~~~~~i~~~~~~L~~~G~~i~~~~-~~~i~I~g~~~~~-~~~~~i~~ 224 (408)
T cd01554 150 YEDPIASAQVKSALMFAALLAKGETVIIEA---AKEPTINHTENMLQTFGGHISVQG-TKKIVVQGPQKLT-GQKYVVPG 224 (408)
T ss_pred EeCCcccHHHHHHHHHHHhcCCCceEEEEe---CCCCCHHHHHHHHHHCCCEEEecC-CcEEEECCCcccc-cceEEeCC
Confidence 999888999999999999999999999975 356789999999999999998765 2479999876676 45788999
Q ss_pred ChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcceeEEeCCC---
Q 010070 327 DASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNK--- 403 (519)
Q Consensus 327 D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~v~~~~--- 403 (519)
|++.+++|++++++++++++|+|++..+ ++..+++.|++||++++..++.+++.+. .++|.+++.++
T Consensus 225 D~~~a~~~l~~~~l~~~~v~i~~~~~~~--~~~~~~~~L~~~G~~v~~~~~~i~v~~~--------~~~~~~i~~~~~~~ 294 (408)
T cd01554 225 DISSAAFFLVAAAIAPGRLVLQNVGINE--TRTGIIDVLRAMGAKIEIGEDTISVESS--------DLKATEICGALIPR 294 (408)
T ss_pred ChhHHHHHHHHHhhcCCeEEEecCCCCc--hhhHHHHHHHHcCCEEEEeCCeEEEecC--------CceeEEeccccCCC
Confidence 9999999999999988999999987655 5578999999999999998888888753 37899998876
Q ss_pred CCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccEEecCccHHHHHH
Q 010070 404 MPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMA 483 (519)
Q Consensus 404 ~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~i~~~~Dhr~ama 483 (519)
.+|++|.++++|++++|+++|.|+.++|+|||||+.+++++|++||+++++++|.++|+|++.++|.++++++|||++|+
T Consensus 295 ~~d~~p~l~~~a~~a~g~~~i~~~~~lr~ke~dr~~~~~~~L~~~G~~i~~~~~~l~i~g~~~l~g~~v~~~~D~r~~ma 374 (408)
T cd01554 295 LIDELPIIALLALQAQGTTVIKDAEELKVKETDRIFVVADELNSMGADIEPTADGMIIKGKEKLHGARVNTFGDHRIGMM 374 (408)
T ss_pred CchHHHHHHHHHHcCCCcEEEECcccccccchhhHHHHHHHHHHcCCEEEEECCEEEEECCCCCCCCEEecCCCHHHHHH
Confidence 77999999999999999999999999999999999999999999999999999999999987789999999999999999
Q ss_pred HHHHHc-CCCCEEEeCCcccccccccHHHHHHhc
Q 010070 484 FSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSV 516 (519)
Q Consensus 484 ~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~l 516 (519)
++++|+ ++++++|+|++|+.|+||+||+.|++|
T Consensus 375 ~~i~al~~~~~~~i~~~~~v~~s~p~f~~~l~~l 408 (408)
T cd01554 375 TALAALVADGEVELDRAEAINTSYPSFFDDLESL 408 (408)
T ss_pred HHHHHhcCCCCEEEecccceeccCccHHHHHhhC
Confidence 999997 688999999999999999999999976
No 9
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=100.00 E-value=1.1e-62 Score=519.42 Aligned_cols=406 Identities=45% Similarity=0.698 Sum_probs=355.1
Q ss_pred eeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCc
Q 010070 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGE 167 (519)
Q Consensus 88 l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~ 167 (519)
++|+|++|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++|++++ .+++|+|.+.....+ .
T Consensus 1 l~g~i~~~~sKs~~~r~l~~a~l~~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~--~~~~i~g~~~~~~~~-----~ 73 (409)
T cd01556 1 LSGEITVPGSKSISHRALLLAALAEGESRIENLLDSDDTLATLEALRALGAKIEEEG--GTVEIVGGGGLGLPP-----E 73 (409)
T ss_pred CcEEEEcCCchHHHHHHHHHHHhcCCCEEECCCCCCHHHHHHHHHHHHcCCeEEecC--CEEEEEcCCCCCCCC-----C
Confidence 479999999999999999999999999999999999999999999999999999875 578999875321111 2
Q ss_pred eEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEEE
Q 010070 168 IELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVK 247 (519)
Q Consensus 168 ~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~ 247 (519)
..++.|++|+++|+++++++.+ ++++.++|++++.+||+..++++|++||++++..++....|+ +.++ ++.+.+++
T Consensus 74 ~~i~~~~s~~s~~~l~~l~~~~--~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~~~~~~~~~~i-~~~~-~~~~~~~~ 149 (409)
T cd01556 74 AVLDCGNSGTTMRLLTGLLALQ--GGDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREGGGYPPL-IGGG-GLKGGEVE 149 (409)
T ss_pred ceEEcCCchHHHHHHHHHHHcC--CCeEEEECCcccccCChHHHHHHHHHCCCEEEeCCCCCCCCe-eecC-CCCCcEEE
Confidence 4688999999999999988763 678999999999999999999999999999997654334455 4443 67888999
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccCC
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~D 327 (519)
+++++|+|++++++++|++++|.++|++. ...+.|+++.++++|++||++|+.++. +.++|+|.++++ +.++.+++|
T Consensus 150 i~~~~ss~~~~~ll~aa~l~~g~~~i~~~-~~~~~~~i~~~~~~L~~lGa~i~~~~~-~~i~I~~~~~l~-~~~i~i~~d 226 (409)
T cd01556 150 IPGAVSSQFKSALLLAAPLAEGPTTIIIG-ELESKPYIDHTERMLRAFGAEVEVDGY-RTITVKGGQKYK-GPEYTVEGD 226 (409)
T ss_pred eCCCCccHHHHHHHHHHhcCCCceEEEee-CCCCcCHHHHHHHHHHHcCCcEEecCC-cEEEECCCCccc-cCeeEeCCc
Confidence 99999999999999999999999999976 445678999999999999999998761 378998866676 668889999
Q ss_pred hhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeC-CeEEEeCCCCCCCCCCCcceeEEeCCCCCc
Q 010070 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE-NSVTVTGPPRDPYGRKHLRAVDVNMNKMPD 406 (519)
Q Consensus 328 ~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~-~~i~i~g~~~~~~~~~~l~g~~v~~~~~pd 406 (519)
++++++|+++++++++++++.|+...+ .+..+++.|++||++++..+ +.++|.+.. .+++.+++.+++||
T Consensus 227 ~s~~~~l~~~a~~~~~~v~i~~~~~~~--~~~~~~~~L~~~G~~i~~~~~~~i~i~~~~-------~~~~~~v~~~~~~d 297 (409)
T cd01556 227 ASSAAFFLAAAAITGSEIVIKNVGLNS--GDTGIIDVLKEMGADIEIGNEDTVVVESGG-------KLKGIDIDGNDIPD 297 (409)
T ss_pred HHHHHHHHHHHHhcCCeEEEcCCCCCC--hHHHHHHHHHHCCCeEEEcCCCeEEEccCC-------CcCceEeccccCch
Confidence 999999999999989999999977654 44789999999999999877 788887641 47788898888899
Q ss_pred HHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCC-CccccEEecCccHHHHHHHH
Q 010070 407 VAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPE-KLKVAAIDTYDDHRMAMAFS 485 (519)
Q Consensus 407 ~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~-~l~~~~i~~~~Dhr~ama~~ 485 (519)
++|++++++++++|+++|+|++++|.|||||++.++++|++||+++++++|.++|+|++ .+.+.++++++|||++|+++
T Consensus 298 ~~~~la~~a~~a~g~~~i~~~~~~~~~~s~r~~~~~~~L~~lG~~i~~~~~~l~i~g~~~~~~~~~~~~~~d~r~~~~~~ 377 (409)
T cd01556 298 EAPTLAVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVEETEDGLIIEGGPLKGAGVEVYTYGDHRIAMSFA 377 (409)
T ss_pred HHHHHHHHHHhCCCCEEEEChhhhccccchHHHHHHHHHHHcCCEEEEECCEEEEECCCCCCCCceecCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999875 45667788888999999999
Q ss_pred HHHc-CCCCEEEeCCcccccccccHHHHHHhc
Q 010070 486 LAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSV 516 (519)
Q Consensus 486 laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~l 516 (519)
++|+ ++++++|+|++|++|+||+||+.|++|
T Consensus 378 ~~~~~~~~~~~i~~~~~v~~~~p~f~~~l~~l 409 (409)
T cd01556 378 IAGLVAEGGVTIEDPECVAKSFPNFFEDLESL 409 (409)
T ss_pred HHHhcCCCCEEEcccCeEeccCCcHHHHHhhC
Confidence 9997 788999999999999999999999976
No 10
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=1.8e-62 Score=522.15 Aligned_cols=415 Identities=44% Similarity=0.695 Sum_probs=358.0
Q ss_pred EEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCC-c
Q 010070 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGL-F 158 (519)
Q Consensus 80 ~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~-~ 158 (519)
....|.++++|+|++|||||.++|+|++|+|++|+++|.|++.++|++.++++|++||++|++ ..++|+|.+.. +
T Consensus 5 ~~~~~~~~l~g~i~~p~sks~~~r~l~~a~La~g~s~i~~~~~~~dv~~~~~~L~~lG~~i~~----~~~~i~~~~~~~~ 80 (435)
T PRK02427 5 LLIIPPSPLSGTVRVPGSKSISHRALLLAALAEGETTITNLLRSEDTLATLNALRALGVEIED----DEVVVEGVGGGGL 80 (435)
T ss_pred cccCCCCCccEEEEcCCChHHHHHHHHHHHhcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEc----ceEEEEccCCCCC
Confidence 344566789999999999999999999999999999999999999999999999999999986 25788876532 3
Q ss_pred cccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcC
Q 010070 159 PLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGK 238 (519)
Q Consensus 159 ~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~ 238 (519)
..+ ...+++|++|+++|+|+++++.. +++++++|+++|.+||+.+++++|++||+++++ .+.+.+|++|+|.
T Consensus 81 ~~~-----~~~i~~~~sg~~~r~l~~laa~~--~~~~~i~g~~~l~~r~~~~l~~~L~~lGa~i~~-~~~~~~~i~i~g~ 152 (435)
T PRK02427 81 KEP-----EDVLDCGNSGTTMRLLTGLLALQ--PGEVVLTGDESLRKRPMGRLLDPLRQMGAKIEG-RDEGYLPLTIRGG 152 (435)
T ss_pred CCC-----CCEEEccCchHHHHHHHHHHHhC--CCeEEEECChhhccCChHHHHHHHHHCCCEEEe-CCCCCCCEEEecC
Confidence 333 34689999999999999977763 568999999999999999999999999999987 2334568999984
Q ss_pred CCCCceEEEEcCCCCHHHHHHHHHHhhcCC-CeEEEEEcCCCCChhHHHHHHHHHHHcCCEEE-EeC-ceeEEEEecCCc
Q 010070 239 GGLPGGKVKLSGKLSSQYLTALLMAAPLAL-GNVEIEIIDKLISVPYVEMTLKLMERFGVFVE-HSD-SWDRFFIQGGQK 315 (519)
Q Consensus 239 ~~l~~~~i~l~gd~Ssq~~salllAA~la~-g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~-~~~-~~~~i~I~g~~~ 315 (519)
...+.++++++.|+|+++++++++++.. |+++|+..+...++||+..++++|++||++|+ ..+ ++..++|+|.+.
T Consensus 153 --~~~~~~~i~~~~ss~~~~~lll~aa~~~~g~~~i~~~~~~~~rp~i~~~~~~L~~lG~~i~~~~~~~~~~i~I~g~~~ 230 (435)
T PRK02427 153 --KKGGPIEYDGPVSSQFVKSLLLLAPLFAEGDTETTVIEPLPSRPHTEITLRMLRAFGVEVENVEGWGYRRIVIKGGQR 230 (435)
T ss_pred --CcCccEEecCCcCCHHHHHHHHHHhhccCCCcEEEEcCCCCCCCHHHHHHHHHHHCCCeEEeecCCcccEEEECCCcc
Confidence 3456788898899999999888877755 88778876666788999999999999999998 443 235788988766
Q ss_pred ccCCccccccCChhhHHHHHHHHHhcCC-eEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCC--------eEEEeCCCC
Q 010070 316 YKSPGNAFVEGDASSASYFVAGAAVTGG-TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTEN--------SVTVTGPPR 386 (519)
Q Consensus 316 l~~~~~~~i~~D~~~a~~~la~aa~~~g-~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~--------~i~i~g~~~ 386 (519)
++ +.++.+++|++++++|++++++++| ++++.|+...+.+.+..+++.|++||++++..++ .++|.+
T Consensus 231 l~-~~~~~i~~D~ssa~~ll~aa~~~~g~~i~i~~~~~~~~~~~~~~l~~L~~~G~~v~~~~~~~~~~~~~~i~i~~--- 306 (435)
T PRK02427 231 LR-GQDITVPGDPSSAAFFLAAAAITGGSEVTITNVGLNSTQGGKAIIDVLEKMGADIEIENEREGGEPVGDIRVRS--- 306 (435)
T ss_pred cc-cceEEeCCCHHHHHHHHHHHHhCCCCeEEEeCCCCCCCcchHHHHHHHHHcCCceEeccccccCCccCcEEEec---
Confidence 66 6688999999999999999999888 8999998676777666799999999999987553 366762
Q ss_pred CCCCCCCcceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCC
Q 010070 387 DPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEK 466 (519)
Q Consensus 387 ~~~~~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~ 466 (519)
.++++.+++..+++|.++.++++|++++|+++|+|+.++|.||+||+..+.++|++||+++++.+|.+.|+|.+
T Consensus 307 -----~~l~~~~~~~~d~~d~~~~l~~~a~~a~g~~~i~~~~~~r~~e~dr~~~~~~~L~~~Ga~v~~~~~~i~i~g~~- 380 (435)
T PRK02427 307 -----SELKGIDIDIPDIIDEAPTLAVLAAFAEGTTVIRNAEELRVKETDRIAAMATELRKLGAEVEETEDGLIITGGP- 380 (435)
T ss_pred -----CCcccEEeecCCCchHHHHHHHHHHhCCCCEEEEChhhccccccHHHHHHHHHHHHCCCEEEEeCCeEEEECCC-
Confidence 24788889888889999999999999999999999999999999999999999999999999999999999864
Q ss_pred ccccEEecCccHHHHHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 467 LKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 467 l~~~~i~~~~Dhr~ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
+++. +++++|||++|+++++|+ +.++++|+|++|++|+||+||++|++||++
T Consensus 381 ~~~~-v~~~~d~r~a~~l~~~a~~a~g~~~i~~~~~v~~~~p~f~~~l~~lg~~ 433 (435)
T PRK02427 381 LAGV-VDSYGDHRIAMAFAIAGLAAEGPVTIDDPECVAKSFPDFFEDLASLGAN 433 (435)
T ss_pred CCCC-ccCCCcHHHHHHHHHHHHcCCCCEEEeccCeeeccCCCHHHHHHHHhcc
Confidence 4777 999999999999999997 577899999999999999999999999975
No 11
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=1.5e-61 Score=545.93 Aligned_cols=415 Identities=29% Similarity=0.485 Sum_probs=359.0
Q ss_pred CcceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCC
Q 010070 76 KASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG 155 (519)
Q Consensus 76 ~~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~ 155 (519)
-++.++|+|..++.|+|++|||||+++|.|++|+|++|+++|+|++.++|+..++++|++||++|++.++ ..++|+|.+
T Consensus 300 ~~~~~~i~~~~~~~G~i~ipgskS~~~r~L~~a~la~g~s~i~~~~~~~dv~~ti~~L~~lG~~v~~~~~-~~~~i~g~~ 378 (735)
T PRK14806 300 NDVSYSVLPGGAVKGTIRVPGDKSISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVIEGPHN-GRVTIHGVG 378 (735)
T ss_pred CceEEEeccCCcccEEEEcCCChhHHHHHHHHHHhCCCcEEEcCCCccHHHHHHHHHHHHcCCEEEecCC-CEEEEEcCC
Confidence 3778999887789999999999999999999999999999999999999999999999999999986433 368888754
Q ss_pred C-CccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEE
Q 010070 156 G-LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVR 234 (519)
Q Consensus 156 g-~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~ 234 (519)
. .+..+ ...+++++||+++|+++++++. ..+++.++|++++++||+.+++++|++||++++. ++.+++|++
T Consensus 379 ~~~~~~~-----~~~i~~~~s~ts~~ll~a~la~--~~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~~-~~~g~~pi~ 450 (735)
T PRK14806 379 LHGLKAP-----PGPLYMGNSGTSMRLLSGLLAA--QSFDSVLTGDASLSKRPMERVAKPLREMGAVIET-GEEGRPPLS 450 (735)
T ss_pred CCCCCCC-----CceeeccCchHHHHHHHHHHhc--CCCeEEEECChhhhhCChHHHHHHHHHCCCEEEc-CCCCcCCEE
Confidence 2 23322 2368899999999999998764 4568999999999999999999999999999985 334678999
Q ss_pred EEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCC
Q 010070 235 INGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314 (519)
Q Consensus 235 I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~ 314 (519)
|+|+.+++++++++++ .|+|++++++++|+++.|+++|+... ++...|+++|++||++|+..++ .+.|.|.+
T Consensus 451 i~g~~~l~g~~~~l~~-~ssq~~s~ll~aA~~~~g~~~i~~~~-----~~~~~t~~~L~~~G~~i~~~~~--~i~I~g~~ 522 (735)
T PRK14806 451 IRGGQRLKGIHYDLPM-ASAQVKSCLLLAGLYAEGETSVTEPA-----PTRDHTERMLRGFGYPVKVEGN--TISVEGGG 522 (735)
T ss_pred EECCCCccceEEeccC-chHHHHHHHHHHHhccCCceEEecCc-----CCHHHHHHHHHHCCCEEEecCC--EEEECCCc
Confidence 9985358899999996 69999999999999999999987432 2344589999999999997664 78998876
Q ss_pred cccCCccccccCChhhHHHHHHHHHhcCC-eEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCe---------EEEeCC
Q 010070 315 KYKSPGNAFVEGDASSASYFVAGAAVTGG-TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS---------VTVTGP 384 (519)
Q Consensus 315 ~l~~~~~~~i~~D~~~a~~~la~aa~~~g-~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~---------i~i~g~ 384 (519)
.++ +.++.+++|++.+++|++++++++| .++++|+.... .+..|++.|++||+++++.++. +.|.+
T Consensus 523 ~~~-~~~~~i~~D~~~a~~~~~~a~~~~g~~v~i~~~~~~~--~~~~~~~~L~~mGa~i~~~~~~~~~g~~~~~i~v~~- 598 (735)
T PRK14806 523 KLT-ATDIEVPADISSAAFFLVAASIAEGSELTLEHVGINP--TRTGVIDILKLMGADITLENEREVGGEPVADIRVRG- 598 (735)
T ss_pred ccc-CCeEEeCCCHHHHHHHHHHHHhCCCCEEEEccCCCCc--chHHHHHHHHHcCCEEEEcCcccccCCcceeEEEec-
Confidence 676 6789999999999999999998755 79999876433 3367999999999999998763 33443
Q ss_pred CCCCCCCCCcceeEEeCCCCC---cHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEE
Q 010070 385 PRDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVI 461 (519)
Q Consensus 385 ~~~~~~~~~l~g~~v~~~~~p---d~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I 461 (519)
.+++|+++++.+.| |++|+|+++|++++|+++|+|++++|+|||||+..++++|++||+++++++|.++|
T Consensus 599 -------~~l~~~~i~~~~~p~~~D~~p~la~~a~~a~G~s~i~~~~~lr~~EsdR~~~~~~~L~~lG~~i~~~~~~l~i 671 (735)
T PRK14806 599 -------ARLKGIDIPEDQVPLAIDEFPVLFVAAACAEGRTVLTGAEELRVKESDRIQVMADGLKTLGIDCEPTPDGIII 671 (735)
T ss_pred -------CCcccEEechHhCcchhhHHHHHHHHHHhCCCcEEEEChHHhccchhHHHHHHHHHHHHcCCEEEEeCCeEEE
Confidence 25889999988888 88899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccEEecCccHHHHHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 462 TPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 462 ~g~~~l~~~~i~~~~Dhr~ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
+|. .+++.++.+|+|||++|+|+++|+ +.++++|+|++||+|+||+||+.|++||++
T Consensus 672 ~g~-~~~~~~v~~~~DhR~~ma~~~~~l~~~~~~~I~~~~~v~ks~p~f~~~l~~lg~~ 729 (735)
T PRK14806 672 EGG-IFGGGEVESHGDHRIAMSFSVASLRASGPITIHDCANVATSFPNFLELANQVGIR 729 (735)
T ss_pred ECC-CCCCceeeCCCCHHHHHHHHHHHhcCCCCEEEcccchhhccCcHHHHHHHHhcCe
Confidence 986 577888999999999999999997 567899999999999999999999999974
No 12
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=100.00 E-value=1.8e-56 Score=473.48 Aligned_cols=406 Identities=24% Similarity=0.322 Sum_probs=341.4
Q ss_pred cceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCC
Q 010070 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (519)
Q Consensus 77 ~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g 156 (519)
|..++|+|.+.+.|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++|++.++ ..+.|+|.+.
T Consensus 1 ~~~~~i~~~~~~~G~i~~pgsKS~~~r~l~~a~la~g~s~i~~~~~~~dv~~t~~~l~~lG~~i~~~~~-~~~~i~g~~~ 79 (417)
T PRK09369 1 MDKLVIEGGKPLSGEVTISGAKNAALPILAASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVEFDGN-GTVTIDASNI 79 (417)
T ss_pred CCEEEEeCCCCceEEEEccCcHHHHHHHHHHHHhCCCCEEEecCCCcHHHHHHHHHHHHCCCEEEEcCC-CEEEEECCCC
Confidence 556788887778999999999999999999999999999999999999999999999999999987653 4788887652
Q ss_pred C-ccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEE
Q 010070 157 L-FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (519)
Q Consensus 157 ~-~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I 235 (519)
. ...+ ..+ .+.+++++|++.++++. .+++++.++|++++++||+.+++++|++||++++..+ +.+|+++
T Consensus 80 ~~~~~~------~~~-~~~s~~s~~~l~~~~~~-~~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~--~~~~v~~ 149 (417)
T PRK09369 80 NNTEAP------YEL-VKKMRASILVLGPLLAR-FGEAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEH--GYVEAKA 149 (417)
T ss_pred CCCcCC------HHH-HhhhhhHHHHHHHHhcc-CCceEEEecCCCccCCCchHHHHHHHHHCCCEEEEEC--CEEEEEe
Confidence 1 1111 112 45677788788887653 2245899999999999999999999999999998754 4555554
Q ss_pred EcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCc
Q 010070 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (519)
Q Consensus 236 ~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~ 315 (519)
. +++++.++++++ .|+|+++.+++++++++|.++|.+. .+++|++.|+++|++||++|+..+ +..+.|+|.+.
T Consensus 150 ~--g~l~~~~~~l~~-~ss~~~~~ll~aa~~~~g~~~i~~~---~~~~~i~~~~~~L~~~G~~v~~~~-~~~i~I~g~~~ 222 (417)
T PRK09369 150 D--GRLKGAHIVLDF-PSVGATENILMAAVLAEGTTVIENA---AREPEIVDLANFLNKMGAKISGAG-TDTITIEGVER 222 (417)
T ss_pred c--CCcccceEeCCC-CCHHHHHHHHHHHHhCCCcEEEeCC---CcCCcHHHHHHHHHHCCCEEEEcC-CceEEEcCCCc
Confidence 3 357888999986 5889888999999999999988743 357899999999999999998643 24899998766
Q ss_pred ccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcc
Q 010070 316 YKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLR 395 (519)
Q Consensus 316 l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~ 395 (519)
++ +.++.+++|++.+++|+++++++++.++|.|+...++ ..+++.|++||++++++++.++|.+. +.++
T Consensus 223 ~~-~~~~~v~~D~s~as~ll~aa~l~~g~v~i~~~~~~~~---~~~~~~L~~~G~~v~~~~~~i~v~~~-------~~l~ 291 (417)
T PRK09369 223 LH-GAEHTVIPDRIEAGTFLVAAAITGGDVTIRGARPEHL---EAVLAKLREAGAEIEEGEDGIRVDMP-------GRLK 291 (417)
T ss_pred cC-CceEEecCCHHHHHHHHHHHHHcCCceEEecCChhHH---HHHHHHHHHcCCEEEEcCCEEEEeeC-------CCcc
Confidence 66 5678899999999999999988889999998765444 36899999999999998888888753 2488
Q ss_pred eeEEeCCCCC----cHHHHHHHHHHcCCCCEEEec-ccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCcccc
Q 010070 396 AVDVNMNKMP----DVAMTLAVVALFADGPTAIRD-VASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVA 470 (519)
Q Consensus 396 g~~v~~~~~p----d~~~~Lavaa~~a~G~s~I~~-~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~ 470 (519)
|.++++.++| |+.|.++++|++++|+++|.+ +.+ +|+ .++++|++||+++++++|.+.|+|+..++|.
T Consensus 292 ~~~i~~~~~p~v~~D~~~~l~~~aa~a~g~~~i~~~~~~------~r~-~~~~~L~~mG~~i~~~~~~l~i~g~~~l~g~ 364 (417)
T PRK09369 292 AVDIKTAPYPGFPTDMQAQFMALLTQAEGTSVITETIFE------NRF-MHVPELIRMGADIEVDGHTAVVRGVEKLSGA 364 (417)
T ss_pred ceEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc------cHH-HHHHHHHHCCCeEEEECCEEEEECCCCcccc
Confidence 9999988888 999999999999999999986 554 355 5899999999999999999999986678898
Q ss_pred EEecCccHHHHHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 471 AIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 471 ~i~~~~Dhr~ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
++++ +|||+||+|+++|+ ++++++|+|++|++|+||+||+.|++||++
T Consensus 365 ~i~~-~D~r~am~~a~~a~~a~g~~~I~~~~~v~rs~~~~~~~l~~lG~~ 413 (417)
T PRK09369 365 PVMA-TDLRASASLVLAGLVAEGTTIVDRIYHLDRGYERIEEKLRALGAD 413 (417)
T ss_pred EEec-CcHHHHHHHHHHHHcCCCcEEECChhHHhCCHHHHHHHHHhCCCE
Confidence 8887 89999999999986 688899999999999999999999999974
No 13
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.6e-56 Score=441.61 Aligned_cols=405 Identities=24% Similarity=0.329 Sum_probs=356.6
Q ss_pred cceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCC
Q 010070 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (519)
Q Consensus 77 ~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g 156 (519)
|+.+.|.++.+++|+|++.|+|+.+.++++++.|++++++|+|+|+..|+..+++.|+.||++|++++ ...+.|+...-
T Consensus 1 M~k~~I~Gg~~L~G~V~IsGAKNaalpii~AtlLa~~~v~L~NvP~l~DV~~~~~ll~~lG~~v~~~~-~~~~~i~~~~i 79 (421)
T COG0766 1 MDKLIIEGGNPLNGEVTISGAKNAALPLLAATLLADEPVTLTNVPDLSDVETMLELLRNLGAKVERDG-DGELEIDAPNI 79 (421)
T ss_pred CCEEEEeCCCccceEEEEeccHhHHHHHHHHHHhCCCcEEEeCCCChHHHHHHHHHHHHcCCEEEEcc-CceEEEccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999987 35778876541
Q ss_pred -CccccccCCCceEEEeCCchhhhh---HHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCc
Q 010070 157 -LFPLAKQQTGEIELFLGNAGTAMR---PLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPP 232 (519)
Q Consensus 157 -~~~~~~~~~~~~~l~~g~sgt~~r---~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~p 232 (519)
....| .++ -..|| ++++.++++.+...+.++|+|.++.||++.|++.|++|||+|+.++ ++
T Consensus 80 ~~~~ap------y~~-----v~kmRASi~vlGplLaR~g~a~V~LPGGCaIG~RPvDlHl~gleaLGA~i~~e~--g~-- 144 (421)
T COG0766 80 NSTEAP------YEL-----VRKMRASILVLGPLLARFGKAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEH--GY-- 144 (421)
T ss_pred ccccCC------HHH-----HHHHHhHHHHHHHHHhhcCceEECCCCCccCCCCchhHHHHHHHHcCCEEEEcC--CE--
Confidence 11221 111 11244 6777777777889999999999999999999999999999999754 34
Q ss_pred EEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEec
Q 010070 233 VRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG 312 (519)
Q Consensus 233 i~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g 312 (519)
+..+.+++|.+.++.++ -.|...+..+||||.+++|.+.|+|. ..+|++..++++|++||++|+..+. ++|+|+|
T Consensus 145 i~a~a~~~L~G~~I~ld-~~SVGATenimmAA~lA~G~TvIeNA---A~EPEIvDLa~~Ln~MGA~I~GaGT-~~I~I~G 219 (421)
T COG0766 145 IEASAPKGLKGAHIYLD-KVSVGATENIMMAAVLAEGTTVIENA---AREPEIVDLANFLNKMGAKIEGAGT-STITIEG 219 (421)
T ss_pred EEEEccCCccceEEEec-CCcccHHHHHHHHHHhcCCcEEEeec---ccCchHHHHHHHHHHcCCeeEEcCC-CeEEEec
Confidence 66676656999999988 57888888999999999999999864 5689999999999999999998876 5999999
Q ss_pred CCcccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCC
Q 010070 313 GQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRK 392 (519)
Q Consensus 313 ~~~l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~ 392 (519)
.++++ +.++.+.||..++.+|++++++++|+++++|+.+.+++ .++..|++||++++.++++++|.... +
T Consensus 220 V~~L~-g~~h~VipDRIEAGT~~~aaA~tgg~v~i~~v~~~hl~---~~~~kL~e~G~~~~~~~~~i~v~~~~------~ 289 (421)
T COG0766 220 VEKLH-GAEHSVIPDRIEAGTFLVAAAITGGDVTIENVRPEHLE---AVLAKLREAGVDIEEGEDGIRVDMEG------K 289 (421)
T ss_pred ccccc-ceeeEecCchhhHHHHHHHHHHhCCcEEEeCCCHHHHH---HHHHHHHHhCCeEEEcCCeEEEeccC------C
Confidence 99988 78899999999999999999999999999999888775 79999999999999999999998753 2
Q ss_pred CcceeEEeCCCCC----cHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCcc
Q 010070 393 HLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLK 468 (519)
Q Consensus 393 ~l~g~~v~~~~~p----d~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~ 468 (519)
.++++++.+..+| |++..+.++.+.++|.+.|++. +.| +|| .+++||.+||++++++++..+|+|+.+|+
T Consensus 290 ~~k~v~i~T~p~PGFpTDmQaqf~~L~~~a~G~s~I~Et----ifE-nRf-~hv~EL~RmGA~i~~~g~~a~i~G~~~L~ 363 (421)
T COG0766 290 RLKAVDIKTLPYPGFPTDMQAQFMALLTVAEGTSVITET----IFE-NRF-MHVPELIRMGANIKLEGNTAVIQGVEQLS 363 (421)
T ss_pred CCCcceeccCCCCCCchhHHHHHHHHHhhcCCceEEEEe----ech-hhh-hhHHHHHhCCCceEEECCEEEEECCcccc
Confidence 4889999887766 9999999999999999999882 234 467 69999999999999999999999999999
Q ss_pred ccEEecCccHHHHHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 469 VAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 469 ~~~i~~~~Dhr~ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
|+++.+ .|.|..+|+.+||| +.+.++|+|.++++++|++|.+.|++|||+
T Consensus 364 ga~V~a-tDLRAsaaLVlAgLvAeG~T~I~~v~hldRGYe~~~~KL~~lGA~ 414 (421)
T COG0766 364 GAPVMA-TDLRASAALVLAGLVAEGETIVNRVYHLDRGYERLEEKLRALGAK 414 (421)
T ss_pred CCeeec-chhhhHHHHHHHHHhhCCeEEEeeEEEeecChhHHHHHHHHcCCc
Confidence 999998 79999999999997 788999999999999999999999999985
No 14
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=100.00 E-value=3.7e-55 Score=461.06 Aligned_cols=393 Identities=24% Similarity=0.326 Sum_probs=328.6
Q ss_pred eeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCC-ccccccCCC
Q 010070 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGL-FPLAKQQTG 166 (519)
Q Consensus 88 l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~-~~~~~~~~~ 166 (519)
++|+|++|||||+++|+|++|+|++|+++|+|.+.++|+..++++|+++|++|++.+ ..+++|+|.+.. +..+
T Consensus 1 ~~g~i~~p~sKS~~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~-~~~~~I~~~~~~~~~~~----- 74 (400)
T cd01555 1 LSGEVRISGAKNAALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEG-ENTLVIDASNINSTEAP----- 74 (400)
T ss_pred CceEEEcCCcHHHHHHHHHHHHhCCCcEEEECCCChHHHHHHHHHHHHcCCEEEECC-CCEEEEECCCCCCCcCC-----
Confidence 479999999999999999999999999999999999999999999999999998865 257899876422 2222
Q ss_pred ceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEE
Q 010070 167 EIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKV 246 (519)
Q Consensus 167 ~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i 246 (519)
. . .+++++++++++.+++.. .....+.++|++++++||++.+++.|++||++++..+ ++.|+ .+++.+++.++
T Consensus 75 ~-~-~~~~~~t~~~~~~~l~~~-~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~~~~--~~~~v--~~~~~~~~~~~ 147 (400)
T cd01555 75 Y-E-LVRKMRASILVLGPLLAR-FGEARVSLPGGCAIGARPVDLHLKGLEALGAKIEIED--GYVEA--KAAGRLKGARI 147 (400)
T ss_pred H-H-HHhhhhhHHHHHHHHhcC-CCceEEEEcCCCccccCCHHHHHHHHHHCCCEEEEeC--CEEEE--ecCCCccceEE
Confidence 1 1 245677888887776542 2346788899999999999999999999999998754 34344 33335778888
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccC
Q 010070 247 KLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEG 326 (519)
Q Consensus 247 ~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~ 326 (519)
.+++ .|+|+.+.+++++++++|.++|.+. .+++++..++++|++||++|+..+. +.+.|+|.+.++ +.++.+++
T Consensus 148 ~i~~-~~~~~~~~ll~aa~~~~g~~~i~~~---~~~~~i~~~~~~L~~~G~~v~~~~~-~~i~I~g~~~l~-~~~~~~~~ 221 (400)
T cd01555 148 YLDF-PSVGATENIMMAAVLAEGTTVIENA---AREPEIVDLANFLNKMGAKIEGAGT-DTIRIEGVERLH-GAEHTVIP 221 (400)
T ss_pred ECCC-CCHHHHHHHHHHHHhCCCeEEEecc---cCCccHHHHHHHHHHCCCEEEEcCC-ceEEEeCCCCCC-CcEEEecC
Confidence 8885 4788888999999999999988753 3567888999999999999987432 479999876666 56788999
Q ss_pred ChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcceeEEeCCCCC-
Q 010070 327 DASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP- 405 (519)
Q Consensus 327 D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~v~~~~~p- 405 (519)
|++.++++++++++++|+++|+|+..++++ .+++.|++||+++++.++.++|.+.. .++++.++++.++|
T Consensus 222 D~~~a~~~l~aa~~~~g~~~i~~~~~~~~~---~~~~~L~~~G~~i~~~~~~i~i~~~~------~~l~~~~i~~~~~p~ 292 (400)
T cd01555 222 DRIEAGTFLVAAAITGGDITVENVIPEHLE---AVLAKLREMGAKIEIGEDGIRVDGDG------GRLKAVDIETAPYPG 292 (400)
T ss_pred CHHHHHHHHHHHHHhCCcEEEeCCChhHHH---HHHHHHHHCCCEEEEcCCEEEEEcCC------CCceeeeeecCcCCC
Confidence 999999999999888999999988766554 69999999999999988999887542 14888999988888
Q ss_pred ---cHHHHHHHHHHcCCCCEEEec-ccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccEEecCccHHHH
Q 010070 406 ---DVAMTLAVVALFADGPTAIRD-VASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMA 481 (519)
Q Consensus 406 ---d~~~~Lavaa~~a~G~s~I~~-~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~i~~~~Dhr~a 481 (519)
|+.|.++++|++++|++++.+ +.+ +|+ .+.++|++||+++++++|.+.|+|..++++.+|+++ |||++
T Consensus 293 ~~~D~~~~l~~~a~~~~g~~~~~~~~~~------~r~-~~~~~L~~lGa~i~~~~~~l~i~g~~~l~~~~v~~~-D~r~a 364 (400)
T cd01555 293 FPTDLQAQFMALLTQAEGTSVITETIFE------NRF-MHVDELNRMGADIKVEGNTAIIRGVTKLSGAPVMAT-DLRAG 364 (400)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeeehh------hhh-HHHHHHHHcCCeEEEECCEEEEECCCcccCceEecC-chHHH
Confidence 999999999999999999987 443 455 489999999999999999999998656888899997 99999
Q ss_pred HHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhc
Q 010070 482 MAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSV 516 (519)
Q Consensus 482 ma~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~l 516 (519)
|+++++|+ ++++++|+|++|++|+||+||++|++|
T Consensus 365 ma~a~~a~~~~g~~~i~~~~~v~ksyp~f~~~l~~l 400 (400)
T cd01555 365 AALVLAGLAAEGETIISNIYHIDRGYERIEEKLRAL 400 (400)
T ss_pred HHHHHHHHcCCCcEEEcChhheeCChhhHHHHHhcC
Confidence 99999997 678899999999999999999999986
No 15
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=100.00 E-value=2e-54 Score=457.90 Aligned_cols=404 Identities=25% Similarity=0.332 Sum_probs=330.2
Q ss_pred cceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCC
Q 010070 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (519)
Q Consensus 77 ~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g 156 (519)
|..+.|.|++.+.|+|++|||||+++|+|++|+|++|+++|+|++.+.|++.++++|++||++|++.+ ..++|+|.+.
T Consensus 1 ~~~~~i~~~~~~~G~v~vpgsKSs~~~ll~aa~la~g~s~i~n~~~~~dv~~t~~~l~~lG~~i~~~~--~~~~I~g~~~ 78 (417)
T PRK12830 1 MEKIVINGGKPLSGEVTISGAKNSAVALIPAAILADGPVTLDGVPDISDVHSLVDILEELGGKVKRDG--DTLEIDPTGI 78 (417)
T ss_pred CceEEEeCCCcceEEEEccCcHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHCCCEEEEcC--CEEEEECCCC
Confidence 55688888778999999999999999999999999999999999999999999999999999998743 5788988531
Q ss_pred -CccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEE
Q 010070 157 -LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (519)
Q Consensus 157 -~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I 235 (519)
..+.+ . .+....+.+++++.++ ++..+..+++++|+++++.||+..++++|++||++++..++ +++|
T Consensus 79 ~~~~~~-----~--~~~~~~~as~~~~~~~-~~~~~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~~----~i~v 146 (417)
T PRK12830 79 QSMPLP-----N--GKVKSLRASYYFMGAL-LGRFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVTNEGG----AIYL 146 (417)
T ss_pred CCCCCC-----H--HHHhhchhHHHHHHHH-hcCCCceEEEecCCCccCCCcCHHHHHHHHHCCCEEEEcCC----EEEE
Confidence 11111 0 0011223334455443 33212337999999999999999999999999999987542 5888
Q ss_pred EcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCc
Q 010070 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (519)
Q Consensus 236 ~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~ 315 (519)
++. .+++.+++++. .|+|+++.++++++++.|.++|.+. .+++++..++++|++||++|+..+ ...++|+|++.
T Consensus 147 ~~~-~l~~~~~~ld~-~ss~~~~~ll~a~~~~~g~~~i~~~---~~~~~i~~l~~~L~~~G~~i~~~~-~~~i~I~g~~~ 220 (417)
T PRK12830 147 KAD-ELKGAHIYLDV-VSVGATINIMLAAVKAKGRTVIENA---AKEPEIIDVATLLNNMGANIKGAG-TDVIRIEGVDE 220 (417)
T ss_pred EeC-CccCCEEECCC-CCHHHHHHHHHHHHcCCCeEEEccC---CcCCcHHHHHHHHHHCCCEEEEcC-CcEEEEccCCc
Confidence 875 57788888886 4777777888888888888887642 456789999999999999998543 24899998776
Q ss_pred ccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcc
Q 010070 316 YKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLR 395 (519)
Q Consensus 316 l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~ 395 (519)
++ +.++.+++|++++++|+++++..++.+++.|+...+++ .+++.|++||++++++++.+++.+. ..++
T Consensus 221 ~~-~~~~~v~~d~~sa~~~l~~aa~~~~~~~i~~~~~~~~~---~~~~~L~~~G~~i~~~~~~i~v~~~-------~~l~ 289 (417)
T PRK12830 221 LH-GCRHTVIPDRIEAGTYMILAAACGGGVTINNVIPEHLE---SFIAKLEEMGVRVEVNEDSIFVEKQ-------GNLK 289 (417)
T ss_pred cc-CcEEeeCCCcHHHHHHHHHHHHhCCCEEEeCCChhHHH---HHHHHHHHCCCEEEEcCCEEEEEeC-------CCcc
Confidence 76 66787899998888777766666788889987654443 6889999999999998888888753 2488
Q ss_pred eeEEeCCCCC----cHHHHHHHHHHcCCCCEEEe-cccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCcccc
Q 010070 396 AVDVNMNKMP----DVAMTLAVVALFADGPTAIR-DVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVA 470 (519)
Q Consensus 396 g~~v~~~~~p----d~~~~Lavaa~~a~G~s~I~-~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~ 470 (519)
|.+++..+.| |+.|+|++++++++|++++. |+.++|+|| .++|++||+++++.+|.+.|+|+.+++|.
T Consensus 290 ~~~i~~~~~p~~~~D~~~~laa~a~~a~g~~~i~~~~~~~r~~~-------~~~L~~mGa~i~~~~~~l~i~g~~~l~g~ 362 (417)
T PRK12830 290 AVDIKTLPYPGFATDLQQPLTPLLLKANGRSVVTDTIYEKRFKH-------VDELKRMGANIKVEGRSAIITGPSKLTGA 362 (417)
T ss_pred ceeeccCCCCCChHHHHHHHHHHHHcCCCcEEEEeccchhhHHH-------HHHHHHCCCeEEEECCEEEEECCCCccCc
Confidence 9999988889 99999999999999999998 688887654 47899999999999999999986678999
Q ss_pred EEecCccHHHHHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 471 AIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 471 ~i~~~~Dhr~ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
+++. +|||++|+++++|+ +.++++|+|++|++++||+||+.|++||++
T Consensus 363 ~v~~-~D~r~am~lav~a~~a~g~~~I~~~~~~~~~~~~~~~~L~~lG~~ 411 (417)
T PRK12830 363 KVKA-TDLRAGAALVIAGLMAEGVTEITNIEHIDRGYSNIIEKLKALGAD 411 (417)
T ss_pred eecC-CchHHHHHHHHHHHcCCCcEEECChhHhhCCHHHHHHHHHHcCCe
Confidence 9987 89999999999986 678899999999999999999999999974
No 16
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=100.00 E-value=1.1e-53 Score=452.15 Aligned_cols=407 Identities=24% Similarity=0.303 Sum_probs=335.2
Q ss_pred cceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCC
Q 010070 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (519)
Q Consensus 77 ~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g 156 (519)
|..++|.|++.++|+|++|||||+++|+|++|+|++|+++|+|++.++|++.++++|++||++|++.+ ..++|+|.+.
T Consensus 1 ~~~~~v~~~~~~~g~i~~p~skS~~~r~l~~a~la~g~~~i~~~~~~~d~~~~~~~l~~lG~~i~~~~--~~~~i~g~~~ 78 (416)
T TIGR01072 1 MDKLVVEGGKPLSGEVTISGAKNAALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDN--NTLEINTPNI 78 (416)
T ss_pred CceEEEeCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCCchHHHHHHHHHHHHCCCEEEEcC--CEEEEECCCC
Confidence 56788888778899999999999999999999999999999999999999999999999999999865 4689988652
Q ss_pred -CccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEE
Q 010070 157 -LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (519)
Q Consensus 157 -~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I 235 (519)
.+..+ ....+ ...++++++.++++ .+...++.+.|++++++||++++++.|++||++++..+ +++|+++
T Consensus 79 ~~~~~~-----~~~s~--~~ra~~~~~~~~la-~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~~~~--~~~~v~~ 148 (416)
T TIGR01072 79 NSTEAP-----YELVR--KMRASILVLGPLLA-RFGKAVVSLPGGCAIGARPVDLHLKGLKALGAEIVIED--GYVYASA 148 (416)
T ss_pred CCCCCC-----HHHHh--hhhHHHHHHHHHhc-cCCceEEEecCCCccCCCCHHHHHHHHHHCCCEEEEEC--CEEEEEe
Confidence 12221 00001 11133435444433 22245889999999999999999999999999998754 4545554
Q ss_pred EcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCc
Q 010070 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (519)
Q Consensus 236 ~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~ 315 (519)
. +.+++.++.+++ .|+|+++++++|++++++.++|.+. .+.+|++.++++|++||++++..++ +.+.|.|.+.
T Consensus 149 ~--~~l~~~~~~l~~-~~s~~~~~ll~aa~~~~~~~~i~~~---~~~~~i~~~~~~L~~~G~~v~~~~~-~~l~I~g~~~ 221 (416)
T TIGR01072 149 K--GRLVGAHIVLDK-VSVGATENIIMAAVLAEGTTVIENA---AREPEIVDLCEFLNKMGAKITGAGS-NTITIEGVEK 221 (416)
T ss_pred c--CcceeeEEecCC-CCHHHHHHHHHHHHhCCCcEEEecC---CcCcCHHHHHHHHHHCCCEEEEcCC-CEEEEeCCCc
Confidence 3 357788898886 6889999999999999999988643 3567899999999999999985432 4899998766
Q ss_pred ccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcc
Q 010070 316 YKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLR 395 (519)
Q Consensus 316 l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~ 395 (519)
++ +.++.+++|++.+++|++++++++|+++|.|+...+++ .+++.|++||++|++.++.+.|.+.+ ..++
T Consensus 222 ~~-~~~~~v~~D~~~a~~~l~a~~l~~g~~~i~~~~~~~~~---~~~~~L~~~G~~v~~~~~~i~v~~~~------~~l~ 291 (416)
T TIGR01072 222 LH-GTEHSVIPDRIEAGTFLVAAAITGGEITIKNVRPDHLR---AVLAKLREIGAEVEVDENGIRVDMRQ------KRLK 291 (416)
T ss_pred cc-CcEEEEcCCHHHHHHHHHHHHHcCCeEEEEecCchHHH---HHHHHHHHCCCEEEEcCCEEEEEecC------CCcc
Confidence 66 56788999999988999888888899999988765554 68999999999999988888887531 1488
Q ss_pred eeEEeCCCCC----cHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccE
Q 010070 396 AVDVNMNKMP----DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 471 (519)
Q Consensus 396 g~~v~~~~~p----d~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~ 471 (519)
+.++++.++| |+.|+++++|++++|+++|.|.. +| ||+ .++++|++||++++..+|.+.|+|+..++|.+
T Consensus 292 ~~~i~~~~~p~v~~D~~~~l~~la~~a~g~~~i~~~~----~~-~r~-~~~~~L~~~Ga~i~~~~~~l~i~g~~~l~g~~ 365 (416)
T TIGR01072 292 AVDIETLPYPGFPTDLQAQFMALLSQAEGTSVITETV----FE-NRF-MHVDELIRMGANIKLEGNTAVIHGVEQLSGAE 365 (416)
T ss_pred eeEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEeee----cc-cHH-HHHHHHHHCCCeEEEECCEEEEECCCCCcCCe
Confidence 9999988888 99999999999999999999832 22 676 58999999999999999999999866788988
Q ss_pred EecCccHHHHHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 472 IDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 472 i~~~~Dhr~ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
+++ +|||++|+++++|+ ++++++|+|++|++|+||+||+.|++||++
T Consensus 366 ~~~-~D~r~am~~a~aa~~~~g~~~I~~~~~~~rs~~~~~~~L~~lG~~ 413 (416)
T TIGR01072 366 VMA-TDLRAGAALVLAGLVAEGETIVHNVYHLDRGYEDLEEKLRALGAK 413 (416)
T ss_pred ecC-CCHHHHHHHHHHHHcCCCcEEECCHhHhhCCHhHHHHHHHhccCE
Confidence 987 89999999999986 678899999999999999999999999974
No 17
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=100.00 E-value=6.8e-35 Score=307.96 Aligned_cols=329 Identities=21% Similarity=0.268 Sum_probs=251.5
Q ss_pred EEEEecCChhHHHHHHH-HHHhcCCceEEecC--CCChhHHHHHHHHHHcCCEEEEcCC--cceEEEEcCCCCccccccC
Q 010070 90 GTVTLPGSKSLSNRILL-LAALSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFA--MKRAIVEGCGGLFPLAKQQ 164 (519)
Q Consensus 90 G~i~~pgsKs~s~R~l~-~AaLa~g~~~i~n~--~~~~dv~~~l~aL~~lGa~v~~~~~--~~~l~I~g~~g~~~~~~~~ 164 (519)
..|.+ |.-..+.|+|+ ++++++++++|+|. +.+||+..++++|++||++|++.++ ..+++|+|. +..+
T Consensus 70 ~~i~~-g~sgt~~r~l~~l~a~~~~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~~~~~~~~~p~~i~~~---~~~~--- 142 (409)
T TIGR01356 70 AELDL-GNSGTTARLLTGVLALADGEVVLTGDESLRKRPMGRLVDALRQLGAEISSLEGGGSLPLTISGP---LPGG--- 142 (409)
T ss_pred CEEEe-cCchHHHHHHHHHHHcCCCeEEEECCcccccCCcHHHHHHHHHCCCEEEEcCCCCcCCEEEecC---CCCC---
Confidence 35665 44457888776 67788999999995 5679999999999999999987643 247888864 1111
Q ss_pred CCceEEEeCCchhhhhHHHHHHHHc--CCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCC
Q 010070 165 TGEIELFLGNAGTAMRPLTAAVTAA--GGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLP 242 (519)
Q Consensus 165 ~~~~~l~~g~sgt~~r~L~a~~~~~--~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~ 242 (519)
...+..+ .+.|++.++++++ .....+++.|++.+.+||+++++++|++||++|+...+ .+++|+|.+.++
T Consensus 143 --~~~i~~~---~S~q~~salllaa~~~~~~~~~~~~~~~~~~~~i~~~l~~L~~~G~~i~~~~~---~~i~I~g~~~l~ 214 (409)
T TIGR01356 143 --IVYISGS---ASSQYKSALLLAAPALQAVGITIVGEPLKSRPYIEITLDLLGSFGVEVERSDG---RKIVVPGGQKYG 214 (409)
T ss_pred --eEEeCCC---cchHHHHHHHHhccccCCCeeEEecCCCCCcCHHHHHHHHHHHCCcEEEEcCC---cEEEECCCCccC
Confidence 2233333 2355555555443 34567888887788889999999999999999986432 379998865588
Q ss_pred ceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccc
Q 010070 243 GGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNA 322 (519)
Q Consensus 243 ~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~ 322 (519)
+.++++++|+|+. +.+++|+.+++|.++|++.......+ ...++++|++||++|+..++ .++|.+.+.++ +.++
T Consensus 215 ~~~~~i~~D~ssa--~~ll~aa~l~~g~i~i~~~~~~~~~~-~~~~~~~L~~~Ga~i~~~~~--~i~v~~~~~l~-~~~~ 288 (409)
T TIGR01356 215 PQGYDVPGDYSSA--AFFLAAAAITGGRVTLENLGINPTQG-DKAIIIVLEEMGADIEVEED--DLIVEGASGLK-GIKI 288 (409)
T ss_pred CCeeECCCCHHHH--HHHHHHHHhcCCEEEECCCCCCCCCC-cHHHHHHHHHcCCeEEEeCC--eEEEEecCCCc-cEEE
Confidence 8899999999983 45555666667777777543222222 24567899999999997765 78898765665 5666
Q ss_pred cccCChhhHHH-HHHHHHhcCCeEEEEccCCCCCc-ch--hHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcceeE
Q 010070 323 FVEGDASSASY-FVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVD 398 (519)
Q Consensus 323 ~i~~D~~~a~~-~la~aa~~~g~v~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~ 398 (519)
.+ +|++.+++ +++++++++|+++|+|+...+.+ +| ..++++|++||+++++.+++++|.|.. .++|.+
T Consensus 289 ~~-~d~~d~~~~l~~~aa~a~g~~~i~~~~~~~~~e~dr~~~~~~~L~~~G~~i~~~~d~i~i~g~~-------~l~g~~ 360 (409)
T TIGR01356 289 DM-DDMIDELPTLAVLAAFAEGVTRITGAEELRVKESDRIAAIAEELRKLGVDVEEFEDGLYIRGKK-------ELKGAV 360 (409)
T ss_pred EC-CCChhHHHHHHHHHHhCCCCEEEEChhHhhhcccHHHHHHHHHHHHcCCEEEEeCCeEEEECCC-------CCCCCe
Confidence 54 57775555 45577788999999998886665 55 679999999999999999999998742 478899
Q ss_pred EeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCe
Q 010070 399 VNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGAT 451 (519)
Q Consensus 399 v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~ 451 (519)
+++++|||++|++++++++++|+++|+|++++. .| |++||+.|++||++
T Consensus 361 i~~~~d~r~am~lav~a~~~~g~~~I~n~~~v~--~s--~p~f~~~l~~lg~~ 409 (409)
T TIGR01356 361 VDTFGDHRIAMAFAVAGLVAEGEVLIDDPECVA--KS--FPSFFDVLERLGAN 409 (409)
T ss_pred eeCCCcHHHHHHHHHHHhcCCCCeEEcCcCeee--cc--CchHHHHHHHhhCC
Confidence 999999999999999999999999999999874 34 99999999999974
No 18
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=297.45 Aligned_cols=342 Identities=23% Similarity=0.303 Sum_probs=257.4
Q ss_pred ceEEEccC----CceeEEEEecCChhHHHHHHH-HHHh-cCCceEEecC--CCChhHHHHHHHHHHcCCEEEEcCC--cc
Q 010070 78 SEIVLQPI----REISGTVTLPGSKSLSNRILL-LAAL-SEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFA--MK 147 (519)
Q Consensus 78 ~~~~i~p~----~~l~G~i~~pgsKs~s~R~l~-~AaL-a~g~~~i~n~--~~~~dv~~~l~aL~~lGa~v~~~~~--~~ 147 (519)
..+.|++. ......+.+ |.-.++.|+++ ++++ .++.+++++. +..||+.+++++|+++|++|+..++ ..
T Consensus 70 ~~~~v~g~g~~~~~~~~~l~~-GnSGTt~R~l~glla~~~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~ 148 (428)
T COG0128 70 DTLVVRGTGGELKEPPAVLDC-GNSGTTLRLLTGLLALGSPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYL 148 (428)
T ss_pred CEEEEeCCCCCcCCCCceeee-ccchhHHHHHHHHHhcCCCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEecCCCCcC
Confidence 45666643 223556666 55568999886 4555 5589999984 6899999999999999999998753 47
Q ss_pred eEEEEcCCCCccccccCCCceEEEeCCchhh-hhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHhCCCEEEEe
Q 010070 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTA-MRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCI 225 (519)
Q Consensus 148 ~l~I~g~~g~~~~~~~~~~~~~l~~g~sgt~-~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l-~~~L~~lGa~v~~~ 225 (519)
|++|+|. +... ...+...-|+.. .-+|+++.+.. ++.+++.++ .+.++||.++ +++|++||++|+.+
T Consensus 149 Pl~i~G~---~~~~-----~i~i~~~~SSq~vsslL~~a~l~~--~~~~~~~~~-~~~s~~yid~T~~mL~~FGv~v~~~ 217 (428)
T COG0128 149 PLTIKGG---LKGG-----EVEIDGPVSSQQVSSLLLLAPLLA--EGTTIIVGG-VLESKPYIDHTLDMLKAFGVEVENE 217 (428)
T ss_pred CEEEECC---CCCc-----eEEEeccchHHHHHHHHHHHhhcC--CCcEEEecC-ccCCccHHHHHHHHHHHcCCeEEee
Confidence 9999986 2221 233332223322 23555555442 455554442 4889999999 99999999999975
Q ss_pred CCCCcCcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEE-EEEcCCCCChhHHHHHHHHHHHcCCEEEEeCc
Q 010070 226 LGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVE-IEIIDKLISVPYVEMTLKLMERFGVFVEHSDS 304 (519)
Q Consensus 226 ~~~~~~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~-I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~ 304 (519)
. . .++|++++++.+++|.||||+||+ +.||.||+++. .++ |...+ ....+.....+++|++||++|++.++
T Consensus 218 ~---~-~~~i~~g~~~~~~~~~VpgD~SSA--afflaAaai~~-~~~~i~~~~-v~~~~~~~~~~~vl~~MGa~i~~~~~ 289 (428)
T COG0128 218 G---Y-RFYIPGGQKLTPGDYDVPGDYSSA--AFFLAAAAITP-RSTGITLKN-VQPNPTDKGILDVLEKMGADIEIGDD 289 (428)
T ss_pred c---c-EEEECCCccccCceEEcCCChhhH--HHHHHHHHhcC-CCceeeecc-CCcCcchhHHHHHHHHcCCeEEEccC
Confidence 2 2 589999877999999999999996 45666666663 333 43322 22346677788999999999999876
Q ss_pred eeEEEEecCCcccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCc-ch--hHHHHHHHHcCCEEEEeCCeEEE
Q 010070 305 WDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTV 381 (519)
Q Consensus 305 ~~~i~I~g~~~l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i 381 (519)
+ .++|++..+|+ +.++....-+..+..+.++|+++.|+++|+|+...+++ +| .++.++|++||+++++.+|++.|
T Consensus 290 ~-~l~V~~~~~l~-gi~vd~~~~pD~~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi~a~a~eL~klG~~v~e~~Dgl~I 367 (428)
T COG0128 290 S-VLRVRGSGELK-GIEVDMDDMPDLAPTLAVLAAFAEGTTRIRNAEELRVKESDRIAAMATELRKLGVEVEETEDGLII 367 (428)
T ss_pred c-eEEEeecCCcc-CeEeCcccCchHHHHHHHHHHhcCCCeEEEchHHhhhcchhHHHHHHHHHHhcCcEEEecCCeEEE
Confidence 3 36898876677 55532221112344677788899999999999999998 66 78999999999999999999999
Q ss_pred eCCCCCCCCCCCccee-EEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeE
Q 010070 382 TGPPRDPYGRKHLRAV-DVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATV 452 (519)
Q Consensus 382 ~g~~~~~~~~~~l~g~-~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i 452 (519)
+|.. .++|. .+++++|||++|+++++++.++++++|.|++|+. .| ||.|++.|+++|+++
T Consensus 368 ~g~~-------~l~g~~~v~s~~DHRiaMa~aia~l~~~~~v~I~~~~~v~--kS--fP~F~~~l~~l~~~~ 428 (428)
T COG0128 368 TGGT-------KLKGAGTVDSYGDHRIAMAFAVAGLLSEGGVRIDDAECVA--KS--FPGFFEDLASLGARI 428 (428)
T ss_pred ECCC-------CCCCCccccCcCcHHHHHHHHHHHhhcCCCEEEcCcccee--cc--CchHHHHHHHhhCCC
Confidence 9872 48888 4999999999999999999999889999999985 35 999999999999864
No 19
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=2.9e-34 Score=305.54 Aligned_cols=333 Identities=23% Similarity=0.304 Sum_probs=247.4
Q ss_pred EEecCChhHHHHHHH-HHHhcCCceEEec--CCCChhHHHHHHHHHHcCCEEEE-cCCcceEEEEcCCCCccccccCCCc
Q 010070 92 VTLPGSKSLSNRILL-LAALSEGTTVVDN--LLSSEDIHHMLDALKKLGLNVEE-DFAMKRAIVEGCGGLFPLAKQQTGE 167 (519)
Q Consensus 92 i~~pgsKs~s~R~l~-~AaLa~g~~~i~n--~~~~~dv~~~l~aL~~lGa~v~~-~~~~~~l~I~g~~g~~~~~~~~~~~ 167 (519)
+.+..+ ..+.|+++ ++++++++++|+| .+..||+..++++|+++|+++++ .++..+++|+|.. ... .
T Consensus 87 i~~~~s-g~~~r~l~~laa~~~~~~~i~g~~~l~~r~~~~l~~~L~~lGa~i~~~~~~~~~i~i~g~~---~~~-----~ 157 (435)
T PRK02427 87 LDCGNS-GTTMRLLTGLLALQPGEVVLTGDESLRKRPMGRLLDPLRQMGAKIEGRDEGYLPLTIRGGK---KGG-----P 157 (435)
T ss_pred EEccCc-hHHHHHHHHHHHhCCCeEEEECChhhccCChHHHHHHHHHCCCEEEeCCCCCCCEEEecCC---cCc-----c
Confidence 444333 47778776 4889999999999 45789999999999999999997 2333478888731 111 3
Q ss_pred eEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEE
Q 010070 168 IELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKV 246 (519)
Q Consensus 168 ~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l-~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i 246 (519)
..++.+.++...+.++.+++... ++++++++..++.+||+.++ +++|++||++++..++.++.|++|+|++.+++.++
T Consensus 158 ~~i~~~~ss~~~~~lll~aa~~~-~g~~~i~~~~~~~~rp~i~~~~~~L~~lG~~i~~~~~~~~~~i~I~g~~~l~~~~~ 236 (435)
T PRK02427 158 IEYDGPVSSQFVKSLLLLAPLFA-EGDTETTVIEPLPSRPHTEITLRMLRAFGVEVENVEGWGYRRIVIKGGQRLRGQDI 236 (435)
T ss_pred EEecCCcCCHHHHHHHHHHhhcc-CCCcEEEEcCCCCCCCHHHHHHHHHHHCCCeEEeecCCcccEEEECCCcccccceE
Confidence 46677777776654443333211 24544555557889999985 99999999999842322356899998756888899
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCC-eEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCce------eEEEEecCCcccCC
Q 010070 247 KLSGKLSSQYLTALLMAAPLALG-NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSW------DRFFIQGGQKYKSP 319 (519)
Q Consensus 247 ~l~gd~Ssq~~salllAA~la~g-~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~------~~i~I~g~~~l~~~ 319 (519)
.+++|+|++ +.+++++.++++ .++|.+.. ..+.++..+++++|++||++|+..++. ..++|.+ ++++ +
T Consensus 237 ~i~~D~ssa--~~ll~aa~~~~g~~i~i~~~~-~~~~~~~~~~l~~L~~~G~~v~~~~~~~~~~~~~~i~i~~-~~l~-~ 311 (435)
T PRK02427 237 TVPGDPSSA--AFFLAAAAITGGSEVTITNVG-LNSTQGGKAIIDVLEKMGADIEIENEREGGEPVGDIRVRS-SELK-G 311 (435)
T ss_pred EeCCCHHHH--HHHHHHHHhCCCCeEEEeCCC-CCCCcchHHHHHHHHHcCCceEeccccccCCccCcEEEec-CCcc-c
Confidence 999999884 344444555566 67776542 223344578999999999999864420 1377773 5565 5
Q ss_pred ccccccCChhhHHHH-HHHHHhcCCeEEEEccCCCCC-cch--hHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcc
Q 010070 320 GNAFVEGDASSASYF-VAGAAVTGGTVTVEGCGTSSL-QGD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLR 395 (519)
Q Consensus 320 ~~~~i~~D~~~a~~~-la~aa~~~g~v~i~g~~~~~~-~~d--~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~ 395 (519)
.++. .+|++.++++ ++++++++|+++|+|+...+. ++| ..+++.|++||+++++++++++|.|.+ ++
T Consensus 312 ~~~~-~~d~~d~~~~l~~~a~~a~g~~~i~~~~~~r~~e~dr~~~~~~~L~~~Ga~v~~~~~~i~i~g~~--------~~ 382 (435)
T PRK02427 312 IDID-IPDIIDEAPTLAVLAAFAEGTTVIRNAEELRVKETDRIAAMATELRKLGAEVEETEDGLIITGGP--------LA 382 (435)
T ss_pred EEee-cCCCchHHHHHHHHHHhCCCCEEEEChhhccccccHHHHHHHHHHHHCCCEEEEeCCeEEEECCC--------CC
Confidence 5665 5588776664 556678899999999887664 455 579999999999999999999998752 46
Q ss_pred eeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEE
Q 010070 396 AVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVE 453 (519)
Q Consensus 396 g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~ 453 (519)
|. +++++|||++|++++++++++|+++|+|+++++ ++ |++||+.|++||++|+
T Consensus 383 ~~-v~~~~d~r~a~~l~~~a~~a~g~~~i~~~~~v~--~~--~p~f~~~l~~lg~~i~ 435 (435)
T PRK02427 383 GV-VDSYGDHRIAMAFAIAGLAAEGPVTIDDPECVA--KS--FPDFFEDLASLGANIE 435 (435)
T ss_pred CC-ccCCCcHHHHHHHHHHHHcCCCCEEEeccCeee--cc--CCCHHHHHHHHhccCC
Confidence 77 999999999999999999999999999999985 23 9999999999999864
No 20
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=100.00 E-value=2.2e-33 Score=297.17 Aligned_cols=296 Identities=22% Similarity=0.260 Sum_probs=234.3
Q ss_pred ceEEec--CCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCC
Q 010070 114 TTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGG 191 (519)
Q Consensus 114 ~~~i~n--~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~ 191 (519)
.+++++ .+..||+..++++|++||++|++.++ .+.|++.+ .+... ...++++++++++|+|++++.+
T Consensus 110 ~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~~--~~~v~~~g-~l~~~-----~~~l~~~ss~~~~~ll~aa~~~--- 178 (417)
T PRK09369 110 KVSLPGGCAIGARPVDLHLKGLEALGAEIEIEHG--YVEAKADG-RLKGA-----HIVLDFPSVGATENILMAAVLA--- 178 (417)
T ss_pred EEEecCCCccCCCchHHHHHHHHHCCCEEEEECC--EEEEEecC-Ccccc-----eEeCCCCCHHHHHHHHHHHHhC---
Confidence 688876 45689999999999999999987654 34555432 23322 3467778999999999987553
Q ss_pred CeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeE
Q 010070 192 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNV 271 (519)
Q Consensus 192 ~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~ 271 (519)
++.+++.+.. .+|++..++++|++||++|+.. ++.|+.|+|++.+.+.++++++|+|. .++++++++++++++
T Consensus 179 ~g~~~i~~~~--~~~~i~~~~~~L~~~G~~v~~~---~~~~i~I~g~~~~~~~~~~v~~D~s~--as~ll~aa~l~~g~v 251 (417)
T PRK09369 179 EGTTVIENAA--REPEIVDLANFLNKMGAKISGA---GTDTITIEGVERLHGAEHTVIPDRIE--AGTFLVAAAITGGDV 251 (417)
T ss_pred CCcEEEeCCC--cCCcHHHHHHHHHHCCCEEEEc---CCceEEEcCCCccCCceEEecCCHHH--HHHHHHHHHHcCCce
Confidence 4567777754 4788888899999999999852 34589999876688889999999875 478888888888888
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCcccc------ccCChhhHHHHHHHHHhcCCeE
Q 010070 272 EIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF------VEGDASSASYFVAGAAVTGGTV 345 (519)
Q Consensus 272 ~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~------i~~D~~~a~~~la~aa~~~g~v 345 (519)
+|.+. +.++.+.++++|++||++|+.+++ .++|.+.+.++ +.++. +++|+. ++|++++++++|+.
T Consensus 252 ~i~~~----~~~~~~~~~~~L~~~G~~v~~~~~--~i~v~~~~~l~-~~~i~~~~~p~v~~D~~--~~l~~~aa~a~g~~ 322 (417)
T PRK09369 252 TIRGA----RPEHLEAVLAKLREAGAEIEEGED--GIRVDMPGRLK-AVDIKTAPYPGFPTDMQ--AQFMALLTQAEGTS 322 (417)
T ss_pred EEecC----ChhHHHHHHHHHHHcCCEEEEcCC--EEEEeeCCCcc-ceEEecCCCCCCHHHHH--HHHHHHHHhCCCeE
Confidence 88743 356778999999999999997654 68887654555 44544 334776 38888888888888
Q ss_pred EEEc-cCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcceeEEeCCCCCcHHHHHHHHHHcCCCCEEE
Q 010070 346 TVEG-CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAI 424 (519)
Q Consensus 346 ~i~g-~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I 424 (519)
++.| +..++ ..++++|++||++++++++.++|.|.. .++|.++++ +||+++|++++++++++|+++|
T Consensus 323 ~i~~~~~~~r----~~~~~~L~~mG~~i~~~~~~l~i~g~~-------~l~g~~i~~-~D~r~am~~a~~a~~a~g~~~I 390 (417)
T PRK09369 323 VITETIFENR----FMHVPELIRMGADIEVDGHTAVVRGVE-------KLSGAPVMA-TDLRASASLVLAGLVAEGTTIV 390 (417)
T ss_pred EEEecccccH----HHHHHHHHHCCCeEEEECCEEEEECCC-------CccccEEec-CcHHHHHHHHHHHHcCCCcEEE
Confidence 8875 65543 458999999999999999999998742 478888887 6889999999999999999999
Q ss_pred ecccccccccchh-HHHHHHHHHHcCCeEE
Q 010070 425 RDVASWRVKETER-MIAICTELRKLGATVE 453 (519)
Q Consensus 425 ~~~~~~r~kEsdR-~~~~~~~L~klGa~i~ 453 (519)
+|++++ +| |++|+++|++||++++
T Consensus 391 ~~~~~v-----~rs~~~~~~~l~~lG~~i~ 415 (417)
T PRK09369 391 DRIYHL-----DRGYERIEEKLRALGADIE 415 (417)
T ss_pred CChhHH-----hCCHHHHHHHHHhCCCEEE
Confidence 999976 45 9999999999999886
No 21
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=100.00 E-value=9.8e-33 Score=292.23 Aligned_cols=311 Identities=22% Similarity=0.273 Sum_probs=234.2
Q ss_pred HHHHHhc--CC-ceEEecC--CCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCceEEEeCCchhhh
Q 010070 105 LLLAALS--EG-TTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAM 179 (519)
Q Consensus 105 l~~AaLa--~g-~~~i~n~--~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~~~l~~g~sgt~~ 179 (519)
+++++++ ++ ++++.+. +..|++..++++|++||++|++.++ .++|.+.+ +... ...++++++++++
T Consensus 97 ~~~~~~~~~~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~~--~i~v~~~~--l~~~-----~~~ld~~ss~~~~ 167 (417)
T PRK12830 97 FMGALLGRFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVTNEGG--AIYLKADE--LKGA-----HIYLDVVSVGATI 167 (417)
T ss_pred HHHHHhcCCCceEEEecCCCccCCCcCHHHHHHHHHCCCEEEEcCC--EEEEEeCC--ccCC-----EEECCCCCHHHHH
Confidence 4445555 45 5778764 5689999999999999999988653 58887642 3222 3457788999999
Q ss_pred hHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEEEEcCCCCHHHHHH
Q 010070 180 RPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259 (519)
Q Consensus 180 r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l~gd~Ssq~~sa 259 (519)
++|++++.+ ++.+++.+. +.++++.++++.|++||++++.. +..++.|+|++.+++.++++++|+++. .++
T Consensus 168 ~ll~a~~~~---~g~~~i~~~--~~~~~i~~l~~~L~~~G~~i~~~---~~~~i~I~g~~~~~~~~~~v~~d~~sa-~~~ 238 (417)
T PRK12830 168 NIMLAAVKA---KGRTVIENA--AKEPEIIDVATLLNNMGANIKGA---GTDVIRIEGVDELHGCRHTVIPDRIEA-GTY 238 (417)
T ss_pred HHHHHHHcC---CCeEEEccC--CcCCcHHHHHHHHHHCCCEEEEc---CCcEEEEccCCcccCcEEeeCCCcHHH-HHH
Confidence 988887653 456667764 56788899999999999999842 234899999767888899888887664 234
Q ss_pred HHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccc---cccCChhhHH-HHH
Q 010070 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNA---FVEGDASSAS-YFV 335 (519)
Q Consensus 260 lllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~---~i~~D~~~a~-~~l 335 (519)
++++|+ ..++++|++. . ..+++.++++|++||++|+.+++ .+.|.+.++++ +.++ .+|++.+.++ +++
T Consensus 239 l~~aa~-~~~~~~i~~~---~-~~~~~~~~~~L~~~G~~i~~~~~--~i~v~~~~~l~-~~~i~~~~~p~~~~D~~~~la 310 (417)
T PRK12830 239 MILAAA-CGGGVTINNV---I-PEHLESFIAKLEEMGVRVEVNED--SIFVEKQGNLK-AVDIKTLPYPGFATDLQQPLT 310 (417)
T ss_pred HHHHHH-hCCCEEEeCC---C-hhHHHHHHHHHHHCCCEEEEcCC--EEEEEeCCCcc-ceeeccCCCCCChHHHHHHHH
Confidence 555554 4567777643 2 34788999999999999998654 68887655565 4433 3666333332 555
Q ss_pred HHHHhcCCeEEEE-ccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcceeEEeCCCCCcHHHHHHHH
Q 010070 336 AGAAVTGGTVTVE-GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVV 414 (519)
Q Consensus 336 a~aa~~~g~v~i~-g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~v~~~~~pd~~~~Lava 414 (519)
++++++.|+.++. |+.+.+ .+++++|++||+++++.++.++|+|.. .++|.+++. +||+++|+++++
T Consensus 311 a~a~~a~g~~~i~~~~~~~r----~~~~~~L~~mGa~i~~~~~~l~i~g~~-------~l~g~~v~~-~D~r~am~lav~ 378 (417)
T PRK12830 311 PLLLKANGRSVVTDTIYEKR----FKHVDELKRMGANIKVEGRSAIITGPS-------KLTGAKVKA-TDLRAGAALVIA 378 (417)
T ss_pred HHHHcCCCcEEEEeccchhh----HHHHHHHHHCCCeEEEECCEEEEECCC-------CccCceecC-CchHHHHHHHHH
Confidence 6666676776776 676544 457899999999999999999998742 488999987 678999999999
Q ss_pred HHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCC
Q 010070 415 ALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPD 457 (519)
Q Consensus 415 a~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d 457 (519)
|++++|+++|+|+++++.+ |++|+++|++||+++++.+|
T Consensus 379 a~~a~g~~~I~~~~~~~~~----~~~~~~~L~~lG~~i~~~~~ 417 (417)
T PRK12830 379 GLMAEGVTEITNIEHIDRG----YSNIIEKLKALGADIWREED 417 (417)
T ss_pred HHcCCCcEEECChhHhhCC----HHHHHHHHHHcCCeEEEccC
Confidence 9999999999999998643 89999999999999986543
No 22
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=100.00 E-value=9.6e-32 Score=284.57 Aligned_cols=329 Identities=20% Similarity=0.229 Sum_probs=246.5
Q ss_pred eEEEccCCceeEEEEecCChhHHHHHH---HHHHhcCC---ceEEec--CCCChhHHHHHHHHHHcCCEEEEcCCcceEE
Q 010070 79 EIVLQPIREISGTVTLPGSKSLSNRIL---LLAALSEG---TTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAI 150 (519)
Q Consensus 79 ~~~i~p~~~l~G~i~~pgsKs~s~R~l---~~AaLa~g---~~~i~n--~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~ 150 (519)
.+.|++... +.+.+|++++...|+. ++++++.+ +..+.+ .+.+|+++.++++|++||+++++.++ .+.
T Consensus 70 ~~~i~g~~~--~~~~~~~~~s~~~ra~~~~~~~~la~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~~~~~--~~~ 145 (416)
T TIGR01072 70 TLEINTPNI--NSTEAPYELVRKMRASILVLGPLLARFGKAVVSLPGGCAIGARPVDLHLKGLKALGAEIVIEDG--YVY 145 (416)
T ss_pred EEEEECCCC--CCCCCCHHHHhhhhHHHHHHHHHhccCCceEEEecCCCccCCCCHHHHHHHHHHCCCEEEEECC--EEE
Confidence 477776432 3688999999888843 33456642 455655 35788999999999999999988764 355
Q ss_pred EEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCc
Q 010070 151 VEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNC 230 (519)
Q Consensus 151 I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~ 230 (519)
|++.+ .+... ...++.++++++.++|++++.+ ++.+++.+. ..++++..+++.|++||++++..+ .
T Consensus 146 v~~~~-~l~~~-----~~~l~~~~s~~~~~ll~aa~~~---~~~~~i~~~--~~~~~i~~~~~~L~~~G~~v~~~~---~ 211 (416)
T TIGR01072 146 ASAKG-RLVGA-----HIVLDKVSVGATENIIMAAVLA---EGTTVIENA--AREPEIVDLCEFLNKMGAKITGAG---S 211 (416)
T ss_pred EEecC-cceee-----EEecCCCCHHHHHHHHHHHHhC---CCcEEEecC--CcCcCHHHHHHHHHHCCCEEEEcC---C
Confidence 55432 23222 3456667778888998887754 345667765 457888788999999999998422 2
Q ss_pred CcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEE
Q 010070 231 PPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFI 310 (519)
Q Consensus 231 ~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I 310 (519)
.++.|.|++.+.+.++++++|+++. +++++++++++++++|.+.. ..+++.++++|++||++|+..++ .+.|
T Consensus 212 ~~l~I~g~~~~~~~~~~v~~D~~~a--~~~l~a~~l~~g~~~i~~~~----~~~~~~~~~~L~~~G~~v~~~~~--~i~v 283 (416)
T TIGR01072 212 NTITIEGVEKLHGTEHSVIPDRIEA--GTFLVAAAITGGEITIKNVR----PDHLRAVLAKLREIGAEVEVDEN--GIRV 283 (416)
T ss_pred CEEEEeCCCcccCcEEEEcCCHHHH--HHHHHHHHHcCCeEEEEecC----chHHHHHHHHHHHCCCEEEEcCC--EEEE
Confidence 3799998756888889999997653 46777777888889987543 34567899999999999998765 6778
Q ss_pred ecC-CcccCCcccc------ccCChhhHHHHHHHHHhcCCeEEEEc-cCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEe
Q 010070 311 QGG-QKYKSPGNAF------VEGDASSASYFVAGAAVTGGTVTVEG-CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVT 382 (519)
Q Consensus 311 ~g~-~~l~~~~~~~------i~~D~~~a~~~la~aa~~~g~v~i~g-~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~ 382 (519)
.+. ++++ +.++. +++|+.+ +++++++++.|+.++.| +..+ |..++++|++||+++++.++.++|.
T Consensus 284 ~~~~~~l~-~~~i~~~~~p~v~~D~~~--~l~~la~~a~g~~~i~~~~~~~----r~~~~~~L~~~Ga~i~~~~~~l~i~ 356 (416)
T TIGR01072 284 DMRQKRLK-AVDIETLPYPGFPTDLQA--QFMALLSQAEGTSVITETVFEN----RFMHVDELIRMGANIKLEGNTAVIH 356 (416)
T ss_pred EecCCCcc-eeEecCCCCCCChHHHHH--HHHHHHHcCCCeEEEEeeeccc----HHHHHHHHHHCCCeEEEECCEEEEE
Confidence 754 3555 44443 3346655 45777777788888887 4332 3458999999999999999999998
Q ss_pred CCCCCCCCCCCcceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchh-HHHHHHHHHHcCCeEE
Q 010070 383 GPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETER-MIAICTELRKLGATVE 453 (519)
Q Consensus 383 g~~~~~~~~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR-~~~~~~~L~klGa~i~ 453 (519)
|.. .++|.++++ +||+++|+++++|++++|+++|+|++++ +| |++|+++|+++|++++
T Consensus 357 g~~-------~l~g~~~~~-~D~r~am~~a~aa~~~~g~~~I~~~~~~-----~rs~~~~~~~L~~lG~~i~ 415 (416)
T TIGR01072 357 GVE-------QLSGAEVMA-TDLRAGAALVLAGLVAEGETIVHNVYHL-----DRGYEDLEEKLRALGAKIE 415 (416)
T ss_pred CCC-------CCcCCeecC-CCHHHHHHHHHHHHcCCCcEEECCHhHh-----hCCHhHHHHHHHhccCEEE
Confidence 742 478888876 6889999999999999999999999987 45 9999999999999885
No 23
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=100.00 E-value=6.6e-31 Score=280.28 Aligned_cols=329 Identities=21% Similarity=0.275 Sum_probs=233.6
Q ss_pred EEEecCChhHHHHHHHHHHhc---CCceEEecCC--CChhHHHHHHHHHHcCCEEEEcCC--cceEEEEcCCCCcccccc
Q 010070 91 TVTLPGSKSLSNRILLLAALS---EGTTVVDNLL--SSEDIHHMLDALKKLGLNVEEDFA--MKRAIVEGCGGLFPLAKQ 163 (519)
Q Consensus 91 ~i~~pgsKs~s~R~l~~AaLa---~g~~~i~n~~--~~~dv~~~l~aL~~lGa~v~~~~~--~~~l~I~g~~g~~~~~~~ 163 (519)
.|.+ |.-..+.|+|+++++. +++++++|.. .+||+..++++|++||++|++.++ ..+++|+|.++ +...
T Consensus 93 ~i~~-g~sgt~~r~l~~~~~~~~~~~~~~~~g~~~l~~Rp~~~l~~~L~~lGa~i~~~~~~~~~pi~i~g~~~-l~~~-- 168 (443)
T PLN02338 93 ELFL-GNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCPPVRVNAAGG-LPGG-- 168 (443)
T ss_pred eEEc-CCcchHHHHHHHHHHhCCCCceEEEECChhhccCCchHHHHHHHHCCCEEEEcCCCCcCCEEEECCCC-CCCc--
Confidence 4554 4445788988765543 5899999965 699999999999999999986432 35789987543 4322
Q ss_pred CCCceEEEeCCchhhhhHHHHHHHHcC-CCeEEEEcCCCCCCCCChHHH-HHHHHhCCCEEEEeCCCCcCcEEEEcCCCC
Q 010070 164 QTGEIELFLGNAGTAMRPLTAAVTAAG-GNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGL 241 (519)
Q Consensus 164 ~~~~~~l~~g~sgt~~r~L~a~~~~~~-~~~~~~l~G~~~l~~Rp~~~l-~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l 241 (519)
...+ .|+ .+.|++.++++++. .++.++|.+...+.+||+.++ +++|++||++++..+ +..+++|.+.+.+
T Consensus 169 ---~~~i-~g~--~Ssq~~sall~aa~~~~g~~~I~~~~~~~s~p~~~~tl~~L~~~G~~i~~~~--~~~~i~i~~~~~l 240 (443)
T PLN02338 169 ---KVKL-SGS--ISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSD--SWDRFFIKGGQKY 240 (443)
T ss_pred ---eEEE-CCC--CchHHHHHHHHHHhcCCCCcEEEECCCCCCccHHHHHHHHHHHcCCeEEecC--CceEEEEcCCccc
Confidence 1222 232 12333333332210 135566776666889999999 999999999998632 2347999875346
Q ss_pred C-ceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCC------
Q 010070 242 P-GGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ------ 314 (519)
Q Consensus 242 ~-~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~------ 314 (519)
. ++++.+++|+|+| ..+++++++++|.++|++......++| ..++++|++||++|+..++ .+.|.+..
T Consensus 241 ~~~~~~~i~~D~ssa--~~~la~a~~~~g~v~i~~~~~~~~~~d-~~~l~~L~~mGa~v~~~~~--~i~i~~~~~~~~~~ 315 (443)
T PLN02338 241 KSPGNAYVEGDASSA--SYFLAGAAITGGTVTVEGCGTTSLQGD-VKFAEVLEKMGAKVEWTEN--SVTVTGPPRDAFGG 315 (443)
T ss_pred cCCCeEEeCCCHHHH--HHHHHHHHhcCCeEEECCCCCCCCcch-hHHHHHHHHcCCeEEEcCC--eEEEcCCccccccc
Confidence 5 5789999999998 355555666777888886544344454 4569999999999997654 67777542
Q ss_pred -cccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCc-ch--hHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCC
Q 010070 315 -KYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYG 390 (519)
Q Consensus 315 -~l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~ 390 (519)
.++ +.++....++..+.+++++++.++|+++|.|+...+.+ .| ..+.+.|++||++++++++.++|.|.+
T Consensus 316 ~~l~-~~~~d~~~~~d~~~~la~aa~~a~g~s~I~~~~~lr~kesdR~~~~~~~L~~lGa~i~~~~d~l~I~g~~----- 389 (443)
T PLN02338 316 KHLK-AIDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCIITPPK----- 389 (443)
T ss_pred CCcc-ceEECcccChhHHHHHHHHHHhCCCcEEEeCchhhcccchHHHHHHHHHHHHcCCEEEEeCCEEEEECCC-----
Confidence 222 22222111122233555566678999999998776554 33 579999999999999999999998642
Q ss_pred CCCcceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcC
Q 010070 391 RKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLG 449 (519)
Q Consensus 391 ~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klG 449 (519)
.++|.++++++|||++|+++++++ +.++++|+|+.++. +| ||+||+.|++|.
T Consensus 390 --~l~g~~i~~~~DhR~ama~ala~l-~~~~~~i~~~~~v~--ks--~P~f~~~l~~~~ 441 (443)
T PLN02338 390 --KLKPAEIDTYDDHRMAMAFSLAAC-GDVPVTINDPGCTR--KT--FPTYFDVLESIA 441 (443)
T ss_pred --CCCCCeEECCCcHHHHHHHHHHHH-cCCCEEEecCCeee--cc--CccHHHHHHHHh
Confidence 488999999999999999998876 45779999999974 45 999999999874
No 24
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=100.00 E-value=2.8e-30 Score=272.58 Aligned_cols=340 Identities=21% Similarity=0.237 Sum_probs=239.6
Q ss_pred ceEEEccCCceeE--EEEe-cCChhHHHHHHHH-HHhcCCceEEecC--CCChhHHHHHHHHHHcCCEEEEcCCcceEE-
Q 010070 78 SEIVLQPIREISG--TVTL-PGSKSLSNRILLL-AALSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFAMKRAI- 150 (519)
Q Consensus 78 ~~~~i~p~~~l~G--~i~~-pgsKs~s~R~l~~-AaLa~g~~~i~n~--~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~- 150 (519)
..++|++...... +..+ .++-..+.|++++ +++++++++|+|. +.++|+..++++|+++|++|++.++.....
T Consensus 58 ~~~~i~g~~~~~~~~~~~i~~~~s~~s~~~l~~l~~~~~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~~~~~~~~~~i 137 (409)
T cd01556 58 GTVEIVGGGGLGLPPEAVLDCGNSGTTMRLLTGLLALQGGDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREGGGYPPL 137 (409)
T ss_pred CEEEEEcCCCCCCCCCceEEcCCchHHHHHHHHHHHcCCCeEEEECCcccccCChHHHHHHHHHCCCEEEeCCCCCCCCe
Confidence 3466666422221 2232 3455578888765 4578999999995 778999999999999999999765321111
Q ss_pred EEcCCCCccccccCCCceEEEeCCch-hhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHhCCCEEEEeCCC
Q 010070 151 VEGCGGLFPLAKQQTGEIELFLGNAG-TAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGT 228 (519)
Q Consensus 151 I~g~~g~~~~~~~~~~~~~l~~g~sg-t~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l-~~~L~~lGa~v~~~~~~ 228 (519)
+.+ + .+... ...++.+.|. ....+|++++.+ ++.+++.+. ++.++|+.++ ++.|++||++++.++
T Consensus 138 ~~~-~-~~~~~-----~~~i~~~~ss~~~~~ll~aa~l~---~g~~~i~~~-~~~~~~~i~~~~~~L~~lGa~i~~~~-- 204 (409)
T cd01556 138 IGG-G-GLKGG-----EVEIPGAVSSQFKSALLLAAPLA---EGPTTIIIG-ELESKPYIDHTERMLRAFGAEVEVDG-- 204 (409)
T ss_pred eec-C-CCCCc-----EEEeCCCCccHHHHHHHHHHhcC---CCceEEEee-CCCCcCHHHHHHHHHHHcCCcEEecC--
Confidence 332 2 22221 2334333222 222344443332 356777776 6789998666 999999999998743
Q ss_pred CcCcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEE
Q 010070 229 NCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRF 308 (519)
Q Consensus 229 ~~~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i 308 (519)
..+++|+|++.+.+.++.+++|+|++ ..+++++.++++.++|.+.. +.+++..+++.|++||++++..++ +.+
T Consensus 205 -~~~i~I~~~~~l~~~~i~i~~d~s~~--~~l~~~a~~~~~~v~i~~~~---~~~~~~~~~~~L~~~G~~i~~~~~-~~i 277 (409)
T cd01556 205 -YRTITVKGGQKYKGPEYTVEGDASSA--AFFLAAAAITGSEIVIKNVG---LNSGDTGIIDVLKEMGADIEIGNE-DTV 277 (409)
T ss_pred -CcEEEECCCCccccCeeEeCCcHHHH--HHHHHHHHhcCCeEEEcCCC---CCChHHHHHHHHHHCCCeEEEcCC-CeE
Confidence 13689987656888899999999875 45555555667777777543 334789999999999999987652 368
Q ss_pred EEecCCcccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCc-ch--hHHHHHHHHcCCEEEEeCCeEEEeCCC
Q 010070 309 FIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPP 385 (519)
Q Consensus 309 ~I~g~~~l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~g~~ 385 (519)
.|+|.+.++ +.++....+...+.++++++++++|+++|+|+...+.+ +| ..+++.|++||+++++++++++|+|.+
T Consensus 278 ~i~~~~~~~-~~~v~~~~~~d~~~~la~~a~~a~g~~~i~~~~~~~~~~s~r~~~~~~~L~~lG~~i~~~~~~l~i~g~~ 356 (409)
T cd01556 278 VVESGGKLK-GIDIDGNDIPDEAPTLAVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVEETEDGLIIEGGP 356 (409)
T ss_pred EEccCCCcC-ceEeccccCchHHHHHHHHHHhCCCCEEEEChhhhccccchHHHHHHHHHHHcCCEEEEECCEEEEECCC
Confidence 888764444 44433222223344556577788899999998765443 33 568999999999999999999998753
Q ss_pred CCCCCCCCcceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHc
Q 010070 386 RDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKL 448 (519)
Q Consensus 386 ~~~~~~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~kl 448 (519)
. .+.+.+++.++|||++|++++++++++|+++|+|++++. .+ ||+||++|++|
T Consensus 357 ~------~~~~~~~~~~~d~r~~~~~~~~~~~~~~~~~i~~~~~v~--~~--~p~f~~~l~~l 409 (409)
T cd01556 357 L------KGAGVEVYTYGDHRIAMSFAIAGLVAEGGVTIEDPECVA--KS--FPNFFEDLESL 409 (409)
T ss_pred C------CCCCceecCCCCHHHHHHHHHHHhcCCCCEEEcccCeEe--cc--CCcHHHHHhhC
Confidence 1 356788888889999999999999999999999999974 23 99999999875
No 25
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=99.98 E-value=3.2e-30 Score=271.54 Aligned_cols=325 Identities=21% Similarity=0.275 Sum_probs=237.0
Q ss_pred eEEEccCCceeEEEEecCChhH---HHHHHHHHHhcC-C--ceEEec--CCCChhHHHHHHHHHHcCCEEEEcCCcceEE
Q 010070 79 EIVLQPIREISGTVTLPGSKSL---SNRILLLAALSE-G--TTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAI 150 (519)
Q Consensus 79 ~~~i~p~~~l~G~i~~pgsKs~---s~R~l~~AaLa~-g--~~~i~n--~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~ 150 (519)
.++|.+.. .. ...+|+..+. +-..+++++++. + .+++++ .+..|+++.++++|++||++|++.++ .+.
T Consensus 60 ~~~I~~~~-~~-~~~~~~~~~~~~~t~~~~~~~l~~~~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~~~~~--~~~ 135 (400)
T cd01555 60 TLVIDASN-IN-STEAPYELVRKMRASILVLGPLLARFGEARVSLPGGCAIGARPVDLHLKGLEALGAKIEIEDG--YVE 135 (400)
T ss_pred EEEEECCC-CC-CCcCCHHHHhhhhhHHHHHHHHhcCCCceEEEEcCCCccccCCHHHHHHHHHHCCCEEEEeCC--EEE
Confidence 46665432 11 4556665443 222223333332 3 345555 45689999999999999999998764 345
Q ss_pred EEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCc
Q 010070 151 VEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNC 230 (519)
Q Consensus 151 I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~ 230 (519)
|.+. +.+... ...++.+++++++++|++++.+ ++.+++.+. ..++++..+++.|++||++++.. + .
T Consensus 136 v~~~-~~~~~~-----~~~i~~~~~~~~~~ll~aa~~~---~g~~~i~~~--~~~~~i~~~~~~L~~~G~~v~~~-~--~ 201 (400)
T cd01555 136 AKAA-GRLKGA-----RIYLDFPSVGATENIMMAAVLA---EGTTVIENA--AREPEIVDLANFLNKMGAKIEGA-G--T 201 (400)
T ss_pred EecC-CCccce-----EEECCCCCHHHHHHHHHHHHhC---CCeEEEecc--cCCccHHHHHHHHHHCCCEEEEc-C--C
Confidence 5432 223222 3456667888888998887554 456677775 34666777899999999999862 2 2
Q ss_pred CcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEE
Q 010070 231 PPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFI 310 (519)
Q Consensus 231 ~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I 310 (519)
.++.|.|++.+++.++.+++|++.. +++++++++++++++|++.. .++...+++.|++||++|+..++ .++|
T Consensus 202 ~~i~I~g~~~l~~~~~~~~~D~~~a--~~~l~aa~~~~g~~~i~~~~----~~~~~~~~~~L~~~G~~i~~~~~--~i~i 273 (400)
T cd01555 202 DTIRIEGVERLHGAEHTVIPDRIEA--GTFLVAAAITGGDITVENVI----PEHLEAVLAKLREMGAKIEIGED--GIRV 273 (400)
T ss_pred ceEEEeCCCCCCCcEEEecCCHHHH--HHHHHHHHHhCCcEEEeCCC----hhHHHHHHHHHHHCCCEEEEcCC--EEEE
Confidence 3799998766888899999997653 56788888888999997542 34667899999999999997665 7888
Q ss_pred ecCC-cccCCcccc------ccCChhhHHHHHHHHHhcCCeEEEEc-cCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEe
Q 010070 311 QGGQ-KYKSPGNAF------VEGDASSASYFVAGAAVTGGTVTVEG-CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVT 382 (519)
Q Consensus 311 ~g~~-~l~~~~~~~------i~~D~~~a~~~la~aa~~~g~v~i~g-~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~ 382 (519)
.+.+ +++ +.++. ++.|+.+ +++++++++.|..++.+ +.. .|..+.++|++||++++++++.++|.
T Consensus 274 ~~~~~~l~-~~~i~~~~~p~~~~D~~~--~l~~~a~~~~g~~~~~~~~~~----~r~~~~~~L~~lGa~i~~~~~~l~i~ 346 (400)
T cd01555 274 DGDGGRLK-AVDIETAPYPGFPTDLQA--QFMALLTQAEGTSVITETIFE----NRFMHVDELNRMGADIKVEGNTAIIR 346 (400)
T ss_pred EcCCCCce-eeeeecCcCCCCHHHHHH--HHHHHHHhCCCeEEEEeeehh----hhhHHHHHHHHcCCeEEEECCEEEEE
Confidence 7654 555 44443 3447765 78888888877777776 443 33469999999999999999999998
Q ss_pred CCCCCCCCCCCcceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHc
Q 010070 383 GPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKL 448 (519)
Q Consensus 383 g~~~~~~~~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~kl 448 (519)
|.+ .++|.+++++ ||+++|+++++|++++|+++|+|+++++ +| ||+||++|++|
T Consensus 347 g~~-------~l~~~~v~~~-D~r~ama~a~~a~~~~g~~~i~~~~~v~--ks--yp~f~~~l~~l 400 (400)
T cd01555 347 GVT-------KLSGAPVMAT-DLRAGAALVLAGLAAEGETIISNIYHID--RG--YERIEEKLRAL 400 (400)
T ss_pred CCC-------cccCceEecC-chHHHHHHHHHHHcCCCcEEEcChhhee--CC--hhhHHHHHhcC
Confidence 742 4778889988 8999999999999999999999999985 34 99999999875
No 26
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=5.8e-30 Score=255.72 Aligned_cols=290 Identities=23% Similarity=0.307 Sum_probs=236.3
Q ss_pred CChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCC
Q 010070 122 SSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201 (519)
Q Consensus 122 ~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~ 201 (519)
..||++.+++.|++|||+|..+++ .+..+..++ +... ...++.-+.|.|..+|+|+..+ +++++|.+..
T Consensus 120 G~RPvDlHl~gleaLGA~i~~e~g--~i~a~a~~~-L~G~-----~I~ld~~SVGATenimmAA~lA---~G~TvIeNAA 188 (421)
T COG0766 120 GARPVDLHLKGLEALGAEIEIEHG--YIEASAPKG-LKGA-----HIYLDKVSVGATENIMMAAVLA---EGTTVIENAA 188 (421)
T ss_pred CCCchhHHHHHHHHcCCEEEEcCC--EEEEEccCC-ccce-----EEEecCCcccHHHHHHHHHHhc---CCcEEEeecc
Confidence 356999999999999999998764 466665544 4432 4456666788999999999886 5788899986
Q ss_pred CCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEEEEcCC-CCHHHHHHHHHHhhcCCCeEEEEEcCCCC
Q 010070 202 RMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGK-LSSQYLTALLMAAPLALGNVEIEIIDKLI 280 (519)
Q Consensus 202 ~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l~gd-~Ssq~~salllAA~la~g~~~I~~~~~~~ 280 (519)
+ ++.+.|+.++|++|||+|+.. |...++|+|..++.+.++++-+| +.. -+|++||++++|.++|++..
T Consensus 189 ~--EPEIvDLa~~Ln~MGA~I~Ga---GT~~I~I~GV~~L~g~~h~VipDRIEA---GT~~~aaA~tgg~v~i~~v~--- 257 (421)
T COG0766 189 R--EPEIVDLANFLNKMGAKIEGA---GTSTITIEGVEKLHGAEHSVIPDRIEA---GTFLVAAAITGGDVTIENVR--- 257 (421)
T ss_pred c--CchHHHHHHHHHHcCCeeEEc---CCCeEEEeccccccceeeEecCchhhH---HHHHHHHHHhCCcEEEeCCC---
Confidence 6 999999999999999999863 34479999998999999998888 544 47899999999999998654
Q ss_pred ChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCC-cccCCccc------cccCChhhHHHHHHHHHhcCCeEEEEccCCC
Q 010070 281 SVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ-KYKSPGNA------FVEGDASSASYFVAGAAVTGGTVTVEGCGTS 353 (519)
Q Consensus 281 s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~-~l~~~~~~------~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~ 353 (519)
..+.+..+..|+++|++++..++ .++|...+ .++ +.++ -+|.|+.. .|+++.+.+.|+.+|+. .
T Consensus 258 -~~hl~~~~~kL~e~G~~~~~~~~--~i~v~~~~~~~k-~v~i~T~p~PGFpTDmQa--qf~~L~~~a~G~s~I~E---t 328 (421)
T COG0766 258 -PEHLEAVLAKLREAGVDIEEGED--GIRVDMEGKRLK-AVDIKTLPYPGFPTDMQA--QFMALLTVAEGTSVITE---T 328 (421)
T ss_pred -HHHHHHHHHHHHHhCCeEEEcCC--eEEEeccCCCCC-cceeccCCCCCCchhHHH--HHHHHHhhcCCceEEEE---e
Confidence 45788899999999999999887 56666543 243 4332 36778865 78888888888888864 2
Q ss_pred CCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccc
Q 010070 354 SLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVK 433 (519)
Q Consensus 354 ~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~k 433 (519)
-++.|..++++|.+||++++.+.+...|+|.+ .|+|..+...|. |..++|.+|++.|+|.|.|++++++
T Consensus 329 ifEnRf~hv~EL~RmGA~i~~~g~~a~i~G~~-------~L~ga~V~atDL-RAsaaLVlAgLvAeG~T~I~~v~hl--- 397 (421)
T COG0766 329 IFENRFMHVPELIRMGANIKLEGNTAVIQGVE-------QLSGAPVMATDL-RASAALVLAGLVAEGETIVNRVYHL--- 397 (421)
T ss_pred echhhhhhHHHHHhCCCceEEECCEEEEECCc-------cccCCeeecchh-hhHHHHHHHHHhhCCeEEEeeEEEe---
Confidence 34445568999999999999999999999874 699999987754 8899999999999999999999986
Q ss_pred cchh-HHHHHHHHHHcCCeEEEe
Q 010070 434 ETER-MIAICTELRKLGATVEEG 455 (519)
Q Consensus 434 EsdR-~~~~~~~L~klGa~i~~~ 455 (519)
|| |+++.+.|+++||+|+..
T Consensus 398 --dRGYe~~~~KL~~lGA~I~r~ 418 (421)
T COG0766 398 --DRGYERLEEKLRALGAKIERV 418 (421)
T ss_pred --ecChhHHHHHHHHcCCcEEEe
Confidence 55 889999999999999864
No 27
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.97 E-value=2.8e-29 Score=279.48 Aligned_cols=321 Identities=19% Similarity=0.242 Sum_probs=236.2
Q ss_pred cCChhHHHHHHHH-HHhcCCceEEecC--CCChhHHHHHHHHHHcCCEEEEcC--CcceEEEEcCCCCccccccCCCceE
Q 010070 95 PGSKSLSNRILLL-AALSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDF--AMKRAIVEGCGGLFPLAKQQTGEIE 169 (519)
Q Consensus 95 pgsKs~s~R~l~~-AaLa~g~~~i~n~--~~~~dv~~~l~aL~~lGa~v~~~~--~~~~l~I~g~~g~~~~~~~~~~~~~ 169 (519)
.|+-+.+.|+|++ +++..+.++|++. +.+||+..++++|++||++|++.+ +..+++|.|.+ +..+ ....
T Consensus 328 ~g~sGt~~r~L~~~~a~~~g~~~i~G~~~L~~RPi~~ll~~L~~lGa~v~~~~~~~~~p~~I~g~~--~~~~----~~~~ 401 (673)
T PRK11861 328 LGNAGTAVRPLTAALAVNGGEYRIHGVPRMHERPIGDLVDGLRQIGARIDYEGNEGFPPLRIRPAT--ISVD----APIR 401 (673)
T ss_pred cCCcchHHHHHHHHHHcCCCeEEEECChhhccCChhHHHHHHHHCCCcEEeCCCCCCCCEEEECCC--cCCC----CeEE
Confidence 4555788898864 4567788999984 578999999999999999998653 23478898754 2111 0112
Q ss_pred EEeCCchhhhhHHHHHHHHc------CCCeEEEEcCCCCCCCCChHHH-HHHHHhCCCEEEEeCCCCcCcEEEEcCCCC-
Q 010070 170 LFLGNAGTAMRPLTAAVTAA------GGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGL- 241 (519)
Q Consensus 170 l~~g~sgt~~r~L~a~~~~~------~~~~~~~l~G~~~l~~Rp~~~l-~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l- 241 (519)
+ -|+- +.+++.++++++ ++...+.+.|. ..++||.++ +++|++||++|+..+ ..+++|.+++.+
T Consensus 402 v-~g~~--Ssq~iSalLlaa~~l~a~~~~~~i~~~g~--~~S~pyv~~t~~~L~~fG~~V~~~~---~~~i~V~~~~~~~ 473 (673)
T PRK11861 402 V-RGDV--SSQFLTALLMTLPLVKAKDGASVVEIDGE--LISKPYIEITIKLMARFGVTVERDG---WQRFTVPAGVRYR 473 (673)
T ss_pred e-CCCc--cHHHHHHHHHHhHhhccCCCCEEEEECCc--cCCcCHHHHHHHHHHHCCCEEEEcC---CcEEEEcCCcccC
Confidence 2 2222 222443333221 12223555553 337899885 999999999998642 225888765445
Q ss_pred CceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecC----Cccc
Q 010070 242 PGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGG----QKYK 317 (519)
Q Consensus 242 ~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~----~~l~ 317 (519)
.+.++.+++|+|++ +.|+++|++++++++|++......++ ...++++|++||++|+..++ .+.|.+. ..++
T Consensus 474 ~~~~~~V~~D~SsA--a~~laaAal~~g~v~I~g~~~~~~q~-d~~i~~iL~~mGa~i~~~~~--~i~i~~~~~~~~~l~ 548 (673)
T PRK11861 474 SPGTIMVEGDASSA--SYFLAAGALGGGPLRVEGVGRASIQG-DVGFANALMQMGANVTMGDD--WIEVRGIGHDHGRLA 548 (673)
T ss_pred CCceeECCCChHHH--HHHHHHHHhcCCeEEECCCCCCCCch-HHHHHHHHHHcCCcEEEeCC--eEEEeeccccCCCcc
Confidence 46799999999986 67788888888889998776433333 45577999999999998765 5777652 1233
Q ss_pred CCc--cccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCc-ch--hHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCC
Q 010070 318 SPG--NAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRK 392 (519)
Q Consensus 318 ~~~--~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~ 392 (519)
+. +....+|. +.+|++++++++|+++|+|+...+++ +| ..+.++|++||+++++.+|+++|+|..
T Consensus 549 -~~~iD~~~~pDl--~p~laalaa~a~G~s~I~~v~~lr~KEsdRi~a~~~eL~klGa~v~~~~d~l~I~g~~------- 618 (673)
T PRK11861 549 -PIDMDFNLIPDA--AMTIAVAALFADGPSTLRNIGSWRVKETDRIAAMATELRKVGATVEEGADYLVVTPPA------- 618 (673)
T ss_pred -ceeeccccCchH--HHHHHHHHHhCCCCEEEECccccccccchHHHHHHHHHHHcCCEEEEeCCeEEEECCC-------
Confidence 33 44556676 45888999999999999999887777 45 578999999999999999999999842
Q ss_pred Ccce-eEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcC
Q 010070 393 HLRA-VDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLG 449 (519)
Q Consensus 393 ~l~g-~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klG 449 (519)
.++| .++++++|||++|+++++++. .++++|+|++++. +| ||+||+.|+++|
T Consensus 619 ~l~~~~~v~s~~DHRiaM~~av~~l~-~~~~~i~~~~~v~--kS--~P~F~~~~~~l~ 671 (673)
T PRK11861 619 QLTPNASIDTYDDHRMAMCFSLVSLG-GVPVRINDPKCVG--KT--FPDYFDRFLALA 671 (673)
T ss_pred CCCCCceEECCCCHHHHHHHHHHHhC-CCCEEEecCCeee--cc--CccHHHHHHHHh
Confidence 3665 889999999999999999986 5679999999985 45 999999999997
No 28
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.97 E-value=5.7e-29 Score=276.28 Aligned_cols=325 Identities=19% Similarity=0.239 Sum_probs=250.7
Q ss_pred CCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCC-CCceEEE-EcC
Q 010070 173 GNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGG-LPGGKVK-LSG 250 (519)
Q Consensus 173 g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~-l~~~~i~-l~g 250 (519)
|+-..+-|.|++++++ ++++.|.| .+..+|+..++++|++||++++.+++ .++|+|.+. +.+.... ..|
T Consensus 23 gsKs~s~R~l~lAaLa---~g~s~i~~--~l~s~D~~~~l~aL~~LGa~i~~~~~----~i~I~g~g~~l~~~~~~i~~g 93 (661)
T PRK11860 23 GSKSISNRVLLLAALS---EGTTTVRD--LLDSDDTRVMLDALRALGCGVEQLGD----TYRITGLGGQFPVKQADLFLG 93 (661)
T ss_pred CCHHHHHHHHHHHHhC---CCCEEEcc--CCccHHHHHHHHHHHHcCCEEEecCC----EEEEECCCCCcCCCCceEEeC
Confidence 4445567877776654 46778888 46799999999999999999986432 378887533 4322222 456
Q ss_pred CCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCc--eeEEEEecCCcccCCccccccCCh
Q 010070 251 KLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDS--WDRFFIQGGQKYKSPGNAFVEGDA 328 (519)
Q Consensus 251 d~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~--~~~i~I~g~~~l~~~~~~~i~~D~ 328 (519)
+.++++ ..|+.++++.+|.++|.+...+.++|+..+ +++|++||++|+..++ +..++|+|+ .+..+.++.+++|+
T Consensus 94 ~sGtt~-r~Ll~~~al~~g~~~i~g~~~L~~RP~~~L-l~~L~~lGa~v~~~~~~g~~pi~I~g~-~l~~g~~i~i~gd~ 170 (661)
T PRK11860 94 NAGTAM-RPLTAALALLGGEYELSGVPRMHERPIGDL-VDALRQLGCDIDYLGNEGFPPLRIGPA-PLRLDAPIRVRGDV 170 (661)
T ss_pred CchHHH-HHHHHHHHcCCCeEEEECCchhhcCChHHH-HHHHHHCCCEEEEcCCCCcccEEEECC-CcCCCceEEEcCCC
Confidence 777776 666667778889999987666667887776 9999999999986532 235788874 44324578899999
Q ss_pred hhH---HHHHHHHHhcCCeEEEEccCCCCCcch-hHHHHHHHHcCCEEEEeCC-eEEEeCCCCCCCCCCCcc-eeEEeCC
Q 010070 329 SSA---SYFVAGAAVTGGTVTVEGCGTSSLQGD-VKFAEVLEKMGAKVTWTEN-SVTVTGPPRDPYGRKHLR-AVDVNMN 402 (519)
Q Consensus 329 ~~a---~~~la~aa~~~g~v~i~g~~~~~~~~d-~~~~~~L~~mGa~v~~~~~-~i~i~g~~~~~~~~~~l~-g~~v~~~ 402 (519)
++. ++|++++++.+++++|++......+.+ ...++.|++||++++..++ .++|.+.+ .++ +.++...
T Consensus 171 SSq~~SalLlAA~~~~g~~~~I~~~~~~~s~~~i~~t~~~L~~~G~~v~~~~~~~i~v~~~~-------~l~~~~~~~V~ 243 (661)
T PRK11860 171 SSQFLTALLMALPLVARRDITIEVVGELISKPYIEITLNLLARFGIAVQREGWQRFTIPAGS-------RYRSPGEIHVE 243 (661)
T ss_pred cHHHHHHHHHHHHhCCCCCeEEEeCCCCCCCCHHHHHHHHHHHCCCEEEecCCcEEEEcCCc-------ccCCCceeEcC
Confidence 877 788888777667888988765444544 4458999999999987554 47776431 242 3455555
Q ss_pred CCCcHHHHHHHHHHcCCC-CEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCC-CCccccEEecCccHHH
Q 010070 403 KMPDVAMTLAVVALFADG-PTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPP-EKLKVAAIDTYDDHRM 480 (519)
Q Consensus 403 ~~pd~~~~Lavaa~~a~G-~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~-~~l~~~~i~~~~Dhr~ 480 (519)
.|+..++.+++++++++| +++|+|+...+.+|++ .++++|++||+++++.++.+.|.|. ..+++.++++++|||+
T Consensus 244 ~D~s~a~~l~aaaa~~~G~~v~i~~v~~~~~q~d~---~il~~L~kmGa~i~~~~~~i~i~~~~~~l~g~~id~~~~pdi 320 (661)
T PRK11860 244 GDASSASYFIAAGAIAGGAPVRIEGVGRDSIQGDI---RFAEAARAMGAQVTSGPNWLEVRRGAWPLKAIDLDCNHIPDA 320 (661)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEECCCCCCCCccHH---HHHHHHHHcCCEEEEeCCEEEEEecCCCCcceEEcCcCChHH
Confidence 566678889999999999 8999999998888764 7889999999999999999999874 4688889999999999
Q ss_pred HHHHHHHHc-CCCCEEEeCCcccccccc----cHHHHHHhcccC
Q 010070 481 AMAFSLAAC-ADVPVTIKDPSCTRKTFP----DYFDVLDSVTKR 519 (519)
Q Consensus 481 ama~~laa~-~~~~v~I~n~~~v~ks~p----~F~~~L~~lg~~ 519 (519)
+|+++++|+ +.++++|+|+++++..++ .|++.|++||++
T Consensus 321 ~p~Lavla~~a~G~s~I~~v~~lr~KEsdRi~~~~~~L~~LGa~ 364 (661)
T PRK11860 321 AMTLAVMALYADGTTTLRNIASWRVKETDRIAAMATELRKLGAT 364 (661)
T ss_pred HHHHHHHHHhCCCcEEEeChhHhhhchhhHHHHHHHHHHHCCCE
Confidence 999999986 788999999999987776 899999999974
No 29
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=99.97 E-value=5e-28 Score=255.57 Aligned_cols=319 Identities=18% Similarity=0.174 Sum_probs=234.2
Q ss_pred EEEecCChhHHHHHHHHHHhc-CCceEEecCC--CChhHHHHHHHHHHcCCEEEEcCCc--ceEEEEcCCCCccccccCC
Q 010070 91 TVTLPGSKSLSNRILLLAALS-EGTTVVDNLL--SSEDIHHMLDALKKLGLNVEEDFAM--KRAIVEGCGGLFPLAKQQT 165 (519)
Q Consensus 91 ~i~~pgsKs~s~R~l~~AaLa-~g~~~i~n~~--~~~dv~~~l~aL~~lGa~v~~~~~~--~~l~I~g~~g~~~~~~~~~ 165 (519)
.+.+ |+-+.+.|+++++++. .+++.+.|.. ..|++..++++|+++|+++++.++. .++++.+. +...
T Consensus 76 ~~~~-g~s~~~~~~l~a~~~~~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~~~~~~~~~~~~~~~---~~~~---- 147 (408)
T cd01554 76 ALNL-GNSGTAIRLISGVLAGADFEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEERDLPPLLKGGK---NLGP---- 147 (408)
T ss_pred eEEc-cCccHHHHHHHHHHHcCCCeEEEECCchhhcCChHHHHHHHHHCCCEEEECCCCCcCCEEEecC---CCCC----
Confidence 5666 6656788888776655 5788999864 5799999999999999999986542 24555321 2221
Q ss_pred CceEEEeC-CchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCce
Q 010070 166 GEIELFLG-NAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244 (519)
Q Consensus 166 ~~~~l~~g-~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~ 244 (519)
...+... .+....-+|++++.+ ++.++|.+. ..+.++..+++.|++||++|+..+ ...++|.|++.+.+.
T Consensus 148 -~i~~~~~~s~q~~~~ll~aa~~~---~g~~~i~~~--~~~~~i~~~~~~L~~~G~~i~~~~---~~~i~I~g~~~~~~~ 218 (408)
T cd01554 148 -IHYEDPIASAQVKSALMFAALLA---KGETVIIEA--AKEPTINHTENMLQTFGGHISVQG---TKKIVVQGPQKLTGQ 218 (408)
T ss_pred -eEEeCCcccHHHHHHHHHHHhcC---CCceEEEEe--CCCCCHHHHHHHHHHCCCEEEecC---CcEEEECCCcccccc
Confidence 1222211 122233344444333 355667765 345566666999999999998632 225899887668777
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccc
Q 010070 245 KVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFV 324 (519)
Q Consensus 245 ~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i 324 (519)
++.+++|+|++ ++++++++++++.++|++.+. .+ +...++++|++||++|+..++ .+.|++. .++ +.++..
T Consensus 219 ~~~i~~D~~~a--~~~l~~~~l~~~~v~i~~~~~-~~--~~~~~~~~L~~~G~~v~~~~~--~i~v~~~-~~~-~~~i~~ 289 (408)
T cd01554 219 KYVVPGDISSA--AFFLVAAAIAPGRLVLQNVGI-NE--TRTGIIDVLRAMGAKIEIGED--TISVESS-DLK-ATEICG 289 (408)
T ss_pred eEEeCCChhHH--HHHHHHHhhcCCeEEEecCCC-Cc--hhhHHHHHHHHcCCEEEEeCC--eEEEecC-Cce-eEEecc
Confidence 89999999887 577777777888899887652 23 567899999999999998665 5777754 343 333322
Q ss_pred -----cCChhhHHHHHHHHHhcCCeEEEEccCCCCCc-ch--hHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcce
Q 010070 325 -----EGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRA 396 (519)
Q Consensus 325 -----~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g 396 (519)
++|. ..+++++|+.++|+++|+|+...+++ +| ..+.+.|++||++++.+++.++|+|.. .++|
T Consensus 290 ~~~~~~~d~--~p~l~~~a~~a~g~~~i~~~~~lr~ke~dr~~~~~~~L~~~G~~i~~~~~~l~i~g~~-------~l~g 360 (408)
T cd01554 290 ALIPRLIDE--LPIIALLALQAQGTTVIKDAEELKVKETDRIFVVADELNSMGADIEPTADGMIIKGKE-------KLHG 360 (408)
T ss_pred ccCCCCchH--HHHHHHHHHcCCCcEEEECcccccccchhhHHHHHHHHHHcCCEEEEECCEEEEECCC-------CCCC
Confidence 3444 34777888888999999999886665 35 457999999999999999999999852 4778
Q ss_pred eEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHc
Q 010070 397 VDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKL 448 (519)
Q Consensus 397 ~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~kl 448 (519)
.+++.++|||++|+++++|++++|+++|+|+++++ +| |++||++|+++
T Consensus 361 ~~v~~~~D~r~~ma~~i~al~~~~~~~i~~~~~v~--~s--~p~f~~~l~~l 408 (408)
T cd01554 361 ARVNTFGDHRIGMMTALAALVADGEVELDRAEAIN--TS--YPSFFDDLESL 408 (408)
T ss_pred CEEecCCCHHHHHHHHHHHhcCCCCEEEeccccee--cc--CccHHHHHhhC
Confidence 88999889999999999999999999999999975 24 99999999875
No 30
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=99.96 E-value=1.7e-28 Score=259.83 Aligned_cols=320 Identities=23% Similarity=0.289 Sum_probs=231.5
Q ss_pred EEEecCChhHHHHHHHH-HHhcCCceEEec--CCCChhHHHHHHHHHHcCCEEEEcCC--cceEEEEcCCCCccccccCC
Q 010070 91 TVTLPGSKSLSNRILLL-AALSEGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA--MKRAIVEGCGGLFPLAKQQT 165 (519)
Q Consensus 91 ~i~~pgsKs~s~R~l~~-AaLa~g~~~i~n--~~~~~dv~~~l~aL~~lGa~v~~~~~--~~~l~I~g~~g~~~~~~~~~ 165 (519)
.+.+ |.-.++.|+|+. ++...+.+++.+ .+..||++.++++|++||+++++.++ ..+++|.|.. ..
T Consensus 85 ~i~~-g~Sgt~lr~L~~~~~~~~~~~~~~G~~~l~~RP~~~l~~~L~~lGa~i~~~~~~~~~pi~i~~~~----~~---- 155 (419)
T PF00275_consen 85 VIDV-GNSGTTLRFLLALLALAPGPVTFTGDCSLGKRPMDPLLDALRQLGARISYLNGEGFLPIRIRGLK----GG---- 155 (419)
T ss_dssp HEEE-CCGHHHHHHHHHHHSEESSEEEEECSBTGGGSTCHHHHHHHHHTTEEEEEETTEEEEEECEEESS----SB----
T ss_pred ceee-ccChhHHhHHHHHHheeeEEEEEeccchhhhCCHHHHHHHHhhCCCEEEEecCCceEEEEEeecc----cC----
Confidence 4454 555688888764 446678899998 46789999999999999999998764 3467777721 11
Q ss_pred CceEEEeCCchhhh-hHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHhCCCEEEEeCCCCcCcEEEEcCCC-CC
Q 010070 166 GEIELFLGNAGTAM-RPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGG-LP 242 (519)
Q Consensus 166 ~~~~l~~g~sgt~~-r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l-~~~L~~lGa~v~~~~~~~~~pi~I~g~~~-l~ 242 (519)
...+....|+... -+|+++...+ .+++++.+ ..++||.++ +++|++||++|+.... + .-+.|.|.+. ++
T Consensus 156 -~~~i~~~~sSq~vs~lll~A~~~a--~g~i~i~~---~~s~p~i~~t~~~L~~~G~~i~~~~~-~-~~~~i~g~~~~~~ 227 (419)
T PF00275_consen 156 -PIEIDGDISSQFVSALLLAAALLA--RGEITIIN---PASEPYIDMTIDMLKKFGAKIEVDGD-E-NIISIPGGQYILP 227 (419)
T ss_dssp -EEEEETSSSHHHHHHHHHHHHTTS--BSEEEEES---ESSSHHHHHHHHHHHHTT-EEEETTS-T-TEEEEETTSSBBB
T ss_pred -cEEEeccCCCHHHHHHHHHHHHhc--CCceEEeC---CCCCCcHHHHHHHHhhceEEEEEccC-C-cEEEEEecccccc
Confidence 2345443333322 2444443332 34888888 557899888 9999999999998422 1 1489999866 66
Q ss_pred ceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHH-HHHHcCCEEEEeCceeEEEEecCCcccCCc-
Q 010070 243 GGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLK-LMERFGVFVEHSDSWDRFFIQGGQKYKSPG- 320 (519)
Q Consensus 243 ~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~-~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~- 320 (519)
+.++++++|+|+. ++++.|+++++|+++|++... .+.+.+...++ +|++||++|+..++ ..+.+.+. .+. +.
T Consensus 228 ~~~~~v~~D~s~A--a~~l~aa~l~~g~v~i~~~~~-~~~~gd~~~l~~iL~~mG~~i~~~~~-~~~~~~~~-~~~-~~~ 301 (419)
T PF00275_consen 228 GCEYTVPGDWSSA--AFFLAAAALTGGEVTIKNLPP-NSLQGDKEFLDDILRRMGAKIEEEDD-GVIVVGGS-GLR-GIE 301 (419)
T ss_dssp SEEEE--B-HHHH--HHHHHHHHHCTTEEEEESEEG-GGGHHHHHHHHHHHHHTTEEEEEESE-EEEEEEET-TSB-EBE
T ss_pred ceeEEecCCHHHH--HHHHHHHheeCcEEEEEecCc-hhhhhhHHHHHHHHHHhCCCcccCCC-eeEEEecc-ccc-ccc
Confidence 6699999999986 567777888888999987653 33344455666 99999999998875 24555543 222 33
Q ss_pred -cccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCc-ch--hHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcce
Q 010070 321 -NAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRA 396 (519)
Q Consensus 321 -~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g 396 (519)
++.-.+|..+ .+.++++++.+..++.|+...+.+ .| ..+++.|++||+++++.+|.+.|.+.. .+++|
T Consensus 302 ~di~~~pd~~p--~l~~~a~~a~g~t~~~g~~~lr~kesdR~~~~~~~L~klG~~~~~~~d~l~i~~~~------~~~~g 373 (419)
T PF00275_consen 302 IDISDAPDLAP--TLAVLAAFAEGETRISGVSHLRDKESDRIEAIVEELRKLGADIEEDGDGLIIHGGR------PPLKG 373 (419)
T ss_dssp EEEEBCSTTCH--HHHHHHHHHHHHEEEESEEEEEGSSSTTHHHHHHHHHHTTSEEEEETTEEEEEEES------E-CBS
T ss_pred cccccCccchh--HHHHHHHHhhcceeccccceeeeehHhhHHHHHHHHhhcCCCEEEECCEEEEECCc------cCCCC
Confidence 3444556644 667777778899999999876665 44 679999999999999999999887652 13889
Q ss_pred eEEeCCCCCcHHHHHHHHHHcCCC-CEEEecccccccccchhHHHHHHHH
Q 010070 397 VDVNMNKMPDVAMTLAVVALFADG-PTAIRDVASWRVKETERMIAICTEL 445 (519)
Q Consensus 397 ~~v~~~~~pd~~~~Lavaa~~a~G-~s~I~~~~~~r~kEsdR~~~~~~~L 445 (519)
.++++++|||++|+++++++.++| +++|+|++++. .| ||+||+.|
T Consensus 374 ~~v~s~~DhRiaMa~~va~l~~~g~~~~I~~~~~v~--ks--yP~F~~~L 419 (419)
T PF00275_consen 374 AEVDSYNDHRIAMALAVAALAAKGEPITIENAECVS--KS--YPNFWEDL 419 (419)
T ss_dssp EEEE-TTSHHHHHHHHHHHHHSBSSEEEEETTHHHH--HT--STTHHHHH
T ss_pred cEEEecHHHHHHHHHHHHhcccCCCeEEEcccceEe--cc--CcChHhhC
Confidence 999999999999999999999999 99999999974 24 89999876
No 31
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.94 E-value=3.4e-25 Score=250.51 Aligned_cols=268 Identities=22% Similarity=0.240 Sum_probs=206.9
Q ss_pred CcCcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEE
Q 010070 229 NCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRF 308 (519)
Q Consensus 229 ~~~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i 308 (519)
+...++|+++ ....++++++|++|+|+. .|++|++++++++|++. + ..+|+++|+++|++||++|+..++ +.+
T Consensus 300 ~~~~~~i~~~-~~~~G~i~ipgskS~~~r--~L~~a~la~g~s~i~~~--~-~~~dv~~ti~~L~~lG~~v~~~~~-~~~ 372 (735)
T PRK14806 300 NDVSYSVLPG-GAVKGTIRVPGDKSISHR--SIMLGSLAEGVTEVEGF--L-EGEDALATLQAFRDMGVVIEGPHN-GRV 372 (735)
T ss_pred CceEEEeccC-CcccEEEEcCCChhHHHH--HHHHHHhCCCcEEEcCC--C-ccHHHHHHHHHHHHcCCEEEecCC-CEE
Confidence 3446888775 355789999999999983 36667799999988753 2 346789999999999999986433 378
Q ss_pred EEecCC--cccCCccccccCChhhHHHHHHHHHhcC--CeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCe---EEE
Q 010070 309 FIQGGQ--KYKSPGNAFVEGDASSASYFVAGAAVTG--GTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS---VTV 381 (519)
Q Consensus 309 ~I~g~~--~l~~~~~~~i~~D~~~a~~~la~aa~~~--g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~---i~i 381 (519)
.|+|.+ .+..+ +..+..+.+.++++++++++++ +.+.+.|......+.+..+++.|++||+++++++++ ++|
T Consensus 373 ~i~g~~~~~~~~~-~~~i~~~~s~ts~~ll~a~la~~~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~~~~~g~~pi~i 451 (735)
T PRK14806 373 TIHGVGLHGLKAP-PGPLYMGNSGTSMRLLSGLLAAQSFDSVLTGDASLSKRPMERVAKPLREMGAVIETGEEGRPPLSI 451 (735)
T ss_pred EEEcCCCCCCCCC-CceeeccCchHHHHHHHHHHhcCCCeEEEECChhhhhCChHHHHHHHHHCCCEEEcCCCCcCCEEE
Confidence 888632 23322 2234445666667776666654 468888877665566788999999999999865444 567
Q ss_pred eCCCCCCCCCCCcceeEEeCCCCCcHH-HHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEE
Q 010070 382 TGPPRDPYGRKHLRAVDVNMNKMPDVA-MTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCV 460 (519)
Q Consensus 382 ~g~~~~~~~~~~l~g~~v~~~~~pd~~-~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~ 460 (519)
+|.. .++|.+++....++.+ +.|+++|++++|+++|.++...|. ...+.|++||++++..+|.+.
T Consensus 452 ~g~~-------~l~g~~~~l~~~ssq~~s~ll~aA~~~~g~~~i~~~~~~~~-------~t~~~L~~~G~~i~~~~~~i~ 517 (735)
T PRK14806 452 RGGQ-------RLKGIHYDLPMASAQVKSCLLLAGLYAEGETSVTEPAPTRD-------HTERMLRGFGYPVKVEGNTIS 517 (735)
T ss_pred ECCC-------CccceEEeccCchHHHHHHHHHHHhccCCceEEecCcCCHH-------HHHHHHHHCCCEEEecCCEEE
Confidence 6531 3789999888777776 478888999999999998876542 256889999999999889999
Q ss_pred EcCCCCccccEEecCccHHHHHHHHHHHc-CC-CCEEEeCCcccccccccHHHHHHhcccC
Q 010070 461 ITPPEKLKVAAIDTYDDHRMAMAFSLAAC-AD-VPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 461 I~g~~~l~~~~i~~~~Dhr~ama~~laa~-~~-~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
|.|++.+++.++++++|||++|+|+++++ ++ .+++|+|+++ .++||+||+.|++||++
T Consensus 518 I~g~~~~~~~~~~i~~D~~~a~~~~~~a~~~~g~~v~i~~~~~-~~~~~~~~~~L~~mGa~ 577 (735)
T PRK14806 518 VEGGGKLTATDIEVPADISSAAFFLVAASIAEGSELTLEHVGI-NPTRTGVIDILKLMGAD 577 (735)
T ss_pred ECCCccccCCeEEeCCCHHHHHHHHHHHHhCCCCEEEEccCCC-CcchHHHHHHHHHcCCE
Confidence 99877788889999999999999988875 43 4699999986 88999999999999974
No 32
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=99.94 E-value=4.9e-26 Score=218.68 Aligned_cols=176 Identities=26% Similarity=0.304 Sum_probs=154.6
Q ss_pred ccCChhhHHHHHHHHHhcCCeEEEEccCCCCC-----cchhHHHHHHHHc-CCEEEEe---CCeEEEeCCCCCCCCCCCc
Q 010070 324 VEGDASSASYFVAGAAVTGGTVTVEGCGTSSL-----QGDVKFAEVLEKM-GAKVTWT---ENSVTVTGPPRDPYGRKHL 394 (519)
Q Consensus 324 i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~-----~~d~~~~~~L~~m-Ga~v~~~---~~~i~i~g~~~~~~~~~~l 394 (519)
-++|++.+.|+++++++++++++|+|+..++. |.|..+++.|++| |+++++. .+.+++.+. .+
T Consensus 6 ~~~d~s~a~~~lala~l~g~~i~I~~i~~~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~~i~~~p~--------~l 77 (211)
T cd01553 6 GKGGGQILRSFLVLAAISGGPITVTGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELGSDRISFRPG--------TV 77 (211)
T ss_pred cCCChHHHHHHHHHHHHcCCCEEEEEeccCCCCccccHHHHHHHHHHHHHcCCeEEeeecCCceEEEeCC--------Cc
Confidence 36899999999999999999999999998877 6788999999999 9999976 566776632 37
Q ss_pred ceeEEeCCC-----CCcHHHHHHHHHHcCCCCEEEeccccccc----ccchhHHHHHHHHHHcCCeEEEeCC--------
Q 010070 395 RAVDVNMNK-----MPDVAMTLAVVALFADGPTAIRDVASWRV----KETERMIAICTELRKLGATVEEGPD-------- 457 (519)
Q Consensus 395 ~g~~v~~~~-----~pd~~~~Lavaa~~a~G~s~I~~~~~~r~----kEsdR~~~~~~~L~klGa~i~~~~d-------- 457 (519)
+|.+++... .+|+.+++++++++++|+++|++...+|+ ||++|...++.+|++||+++++..+
T Consensus 78 ~g~~i~~~~~s~g~~~d~~~~l~~la~~a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~~~~~~~~~~~~~~g 157 (211)
T cd01553 78 RGGDVRFAIGSAGSCTDVLQTILPLLLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQEETLLRHGFYPAG 157 (211)
T ss_pred cceEEEeccCCcccHHHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCcceeeeeeeeeccCC
Confidence 787777653 56899999999999999999999999999 9999999999999999999998888
Q ss_pred ----eEEEcCCCCccccEEecCccHHHHHHHHHHHcCCCCEEEeCCcccccccccHHHHHHhc
Q 010070 458 ----YCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSV 516 (519)
Q Consensus 458 ----~l~I~g~~~l~~~~i~~~~Dhr~ama~~laa~~~~~v~I~n~~~v~ks~p~F~~~L~~l 516 (519)
.++|.|...+++.++ |+||++++++ ++++|+|++|+.|+||+||++|++|
T Consensus 158 ~g~~~~~i~g~~~l~~~~~------R~~m~~~~~~---~~~~i~~~~~v~~s~p~f~~~l~~l 211 (211)
T cd01553 158 GGVVATEVSPVEKLNTAQL------RQLVLPMLLA---SGAVEFTVAHPSCHLLTNFAVLEAL 211 (211)
T ss_pred CCccEEEEcCCcccccccH------HHHHHHHHHC---CCeEecCCCccccCCccHHHHhhcC
Confidence 888888656666543 9999999988 6799999999999999999999875
No 33
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=99.78 E-value=4.9e-18 Score=172.50 Aligned_cols=329 Identities=21% Similarity=0.257 Sum_probs=224.8
Q ss_pred CChhHHHHHHH--HHHh-cC--Cc-eEEecCC--CChhHHHHHHHHHHcCCEEEEcC--CcceEEEEcCCCCccccccCC
Q 010070 96 GSKSLSNRILL--LAAL-SE--GT-TVVDNLL--SSEDIHHMLDALKKLGLNVEEDF--AMKRAIVEGCGGLFPLAKQQT 165 (519)
Q Consensus 96 gsKs~s~R~l~--~AaL-a~--g~-~~i~n~~--~~~dv~~~l~aL~~lGa~v~~~~--~~~~l~I~g~~g~~~~~~~~~ 165 (519)
|.-....|.|. +|+. +. +. .+|++.. +.||+..++..|||+|++|++.. +..++.|...++ ++...+.
T Consensus 188 gnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rPi~~LV~~l~q~GadI~~~~~t~~~p~dv~~~~~-~~gg~v~- 265 (595)
T KOG0692|consen 188 GNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERPIGDLVVGLKQLGADIECTLGTNCPPVDVNANGG-LPGGKVK- 265 (595)
T ss_pred CccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCCchHHHHHHHhcCCceEEeccCCCCceeeeccCC-CcCceee-
Confidence 33446778885 3333 22 23 5788765 68999999999999999999864 345777764432 4433111
Q ss_pred CceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCce
Q 010070 166 GEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244 (519)
Q Consensus 166 ~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l-~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~ 244 (519)
-.-...++.++.+ ||++..+ .++.++.+.++. .-+.||.++ +++|..||++++...... ..+.|.|+....++
T Consensus 266 -l~g~Vssqy~~~~--lm~ap~a-~g~vt~~~vdgk-~iS~pyv~mt~~lme~fgvn~~~s~~~~-~~y~i~g~~y~~p~ 339 (595)
T KOG0692|consen 266 -LSGSVSSQYLTAL--LMCAPLA-LGDVTIEIVDGK-LISVPYVEMTLKLMERFGVNVEHSTSWD-RFYVIGGQKYKSPG 339 (595)
T ss_pred -eeeeehhhHHHHH--HHhhhhc-CCceEEEeecCc-cccccchhHHHHHHHHhCcCeEecCCCc-ceEeccCcccCCCC
Confidence 1122334444443 3334343 467788777654 558899999 999999999998743322 23445444234678
Q ss_pred EEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCc----cc--C
Q 010070 245 KVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK----YK--S 318 (519)
Q Consensus 245 ~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~----l~--~ 318 (519)
++.+++|.|+. +.++..|+.++-.+++.+.+. .|.+++....++|+.||+++++..+ ++++.|... ++ .
T Consensus 340 ~~~ve~dAssa--~yfla~aa~tg~~~tV~~~g~-~Slqgda~Fa~vl~pmgc~v~qt~~--svtv~gp~~ga~~~~~lr 414 (595)
T KOG0692|consen 340 NAYVEGDASSA--SYFLAGAAITGETVTVEGCGT-TSLQGDAKFAEVLEPMGCKVSQTEN--SVTVTGPPRGAFGMRHLR 414 (595)
T ss_pred Cceeecccccc--cccceeeeEecceeeeccccc-eecccccchHhhhccccceeeeecc--cccccCCCCCcccceehh
Confidence 88999998875 455555667777788887764 4556666677999999999998765 677776521 11 0
Q ss_pred Ccc-ccccCChhhHHHHHHHHHhc-----CCeEEEEccCCCCCcc--h-hHHHHHHHHcCCEEEEeCCeEEEeCCCCCCC
Q 010070 319 PGN-AFVEGDASSASYFVAGAAVT-----GGTVTVEGCGTSSLQG--D-VKFAEVLEKMGAKVTWTENSVTVTGPPRDPY 389 (519)
Q Consensus 319 ~~~-~~i~~D~~~a~~~la~aa~~-----~g~v~i~g~~~~~~~~--d-~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~ 389 (519)
..+ ....+|. +.+..+-|+.+ +++.+|+++...+.+. + .++..+|+++|+.+++..+++.|.+++.
T Consensus 415 ~iD~m~~m~d~--~~t~svvA~~~~~~s~gdptti~~~as~rvket~r~ia~~~el~klg~~~~E~~dg~~v~~~~~--- 489 (595)
T KOG0692|consen 415 AIDVMNKMPDV--AMTLSVVALFAGLRSSGDPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDGYCVITPPE--- 489 (595)
T ss_pred hhcccccccch--hHhHhHHHHhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhcccccccCceEEEeCCch---
Confidence 112 1122333 22333444444 6789999998877763 2 5788899999999999999998888763
Q ss_pred CCCCcceeEEe---CCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHc
Q 010070 390 GRKHLRAVDVN---MNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKL 448 (519)
Q Consensus 390 ~~~~l~g~~v~---~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~kl 448 (519)
+.|+-.+.+ +++||+++|.+.++|..++-+.+|.+..|.| | + |+.+|+.|.+.
T Consensus 490 --k~lk~ae~~g~~TydDhr~am~fsvLA~~~~~~~~i~d~~ct~-k-t--~p~y~~Vl~~~ 545 (595)
T KOG0692|consen 490 --KKLKLAEIDGSLTYDDHRMAMAFSVLAACADVPITINDPGCTR-K-T--FPDYFQVLERI 545 (595)
T ss_pred --HhccchhhccccccccccchhhhhHHHhccCCCccccCCCccc-c-c--cchHHHHHHHH
Confidence 357766766 7899999999999999999889999999886 2 3 99999999753
No 34
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=99.41 E-value=4.6e-12 Score=121.83 Aligned_cols=172 Identities=17% Similarity=0.141 Sum_probs=120.5
Q ss_pred cCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCCh-----hHHHHHHHHHHHc-CCEEEEeC-ceeEEEEecCCcccCCcc
Q 010070 249 SGKLSSQYLTALLMAAPLALGNVEIEIIDKLISV-----PYVEMTLKLMERF-GVFVEHSD-SWDRFFIQGGQKYKSPGN 321 (519)
Q Consensus 249 ~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~-----~~v~~t~~~L~~~-G~~i~~~~-~~~~i~I~g~~~l~~~~~ 321 (519)
.+|+|+. ..++.+|++++++++|++... .+. +.....+++|++| |++++... ....+.+.+. .++ +.+
T Consensus 7 ~~d~s~a--~~~lala~l~g~~i~I~~i~~-~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~~i~~~p~-~l~-g~~ 81 (211)
T cd01553 7 KGGGQIL--RSFLVLAAISGGPITVTGIRP-DRAKPGLLRQHLTFLKALEKICGATVEGGELGSDRISFRPG-TVR-GGD 81 (211)
T ss_pred CCChHHH--HHHHHHHHHcCCCEEEEEecc-CCCCccccHHHHHHHHHHHHHcCCeEEeeecCCceEEEeCC-Ccc-ceE
Confidence 4677664 566666778888899997653 222 4567789999999 99998751 1125677653 344 443
Q ss_pred cccc-------CChhhHHHHHHHHHhcCCeEEEEccCCCCC----c-ch--hHHHHHHHHcCCEEEEeCC----------
Q 010070 322 AFVE-------GDASSASYFVAGAAVTGGTVTVEGCGTSSL----Q-GD--VKFAEVLEKMGAKVTWTEN---------- 377 (519)
Q Consensus 322 ~~i~-------~D~~~a~~~la~aa~~~g~v~i~g~~~~~~----~-~d--~~~~~~L~~mGa~v~~~~~---------- 377 (519)
+... +|..+ .+++++++++|+++|++....+. + .| ..+++.|++||++++...+
T Consensus 82 i~~~~~s~g~~~d~~~--~l~~la~~a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~~~~~~~~~~~~~~g~g 159 (211)
T cd01553 82 VRFAIGSAGSCTDVLQ--TILPLLLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQEETLLRHGFYPAGGG 159 (211)
T ss_pred EEeccCCcccHHHHHH--HHHHHHHhCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCcceeeeeeeeeccCCCC
Confidence 3222 23433 56777778899999999887655 4 23 5689999999999988777
Q ss_pred --eEEEeCCCCCCCCCCCcceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHc
Q 010070 378 --SVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKL 448 (519)
Q Consensus 378 --~i~i~g~~~~~~~~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~kl 448 (519)
.+.|.|. ..+++.++ |++|++++++ ++++|+|++++. .| |++|+++|++|
T Consensus 160 ~~~~~i~g~-------~~l~~~~~------R~~m~~~~~~----~~~~i~~~~~v~--~s--~p~f~~~l~~l 211 (211)
T cd01553 160 VVATEVSPV-------EKLNTAQL------RQLVLPMLLA----SGAVEFTVAHPS--CH--LLTNFAVLEAL 211 (211)
T ss_pred ccEEEEcCC-------cccccccH------HHHHHHHHHC----CCeEecCCCccc--cC--CccHHHHhhcC
Confidence 5555543 13555543 8999988877 779999999974 24 89999999764
No 35
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=94.65 E-value=1.7 Score=42.20 Aligned_cols=182 Identities=21% Similarity=0.235 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCCceEEecCCCChh-------HHHHHHHHHHc-CCEEEE-cCCcceEEEEcCCCCccccccCCCceEE
Q 010070 100 LSNRILLLAALSEGTTVVDNLLSSED-------IHHMLDALKKL-GLNVEE-DFAMKRAIVEGCGGLFPLAKQQTGEIEL 170 (519)
Q Consensus 100 ~s~R~l~~AaLa~g~~~i~n~~~~~d-------v~~~l~aL~~l-Ga~v~~-~~~~~~l~I~g~~g~~~~~~~~~~~~~l 170 (519)
+-.-.+.+|+++..+.+|+|.-..|+ =...++++.++ ++++.. +.+...++..+. .+..+ ...+
T Consensus 12 ~lR~~laLS~l~gkpi~I~~IR~~r~~PGL~~qh~~~l~ll~~it~g~~~g~~~~st~l~f~Pg--~i~~g-----~~~~ 84 (228)
T PF01137_consen 12 ILRTALALSALTGKPIRIENIRANRPNPGLRPQHLSALRLLAKITNGSVIGISLGSTELTFRPG--EIRGG-----DYTF 84 (228)
T ss_dssp CHHHHHHHHHHHT--EEEESTTTTSSS-S--HHHHHHHHHHHHHCCSEEEEESTTSSEEEEE----EE-EC-----EEEE
T ss_pred HHHHHHHHHhccCCCEEEEEEecCCCCCcccHHHHHHHHHHHHhcCCeecceecCCcEEEEECC--CccCC-----cEEE
Confidence 34446789999999999999654333 23456666665 455553 333345665542 12222 4578
Q ss_pred EeCCchhhhhHHHHH---HHHcCCCeEEEEcCCCCCCC-CChHHH----HHHHHhCCCEEEEeC-CCCcCcEEEEcCCCC
Q 010070 171 FLGNAGTAMRPLTAA---VTAAGGNLSYILDGVPRMRE-RPIGDL----VTGLKQLGADVDCIL-GTNCPPVRINGKGGL 241 (519)
Q Consensus 171 ~~g~sgt~~r~L~a~---~~~~~~~~~~~l~G~~~l~~-Rp~~~l----~~~L~~lGa~v~~~~-~~~~~pi~I~g~~~l 241 (519)
+++.+|+...+|-++ +..+..+.++++.|+-.-.. .+++.+ +-.|++||++.+..- ..|+.| -
T Consensus 85 d~~tagsi~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lP~l~~~G~~~~l~i~krG~~P--------~ 156 (228)
T PF01137_consen 85 DCGTAGSISLVLQALLPLLLFAKGPSRLTLTGGTNVPFSPSVDYIRQVFLPLLRKFGIPVELKIIKRGFYP--------K 156 (228)
T ss_dssp EEETTCBHHHHHHHHCCCHCCSSSEEEEEEEEBSBBTTS--HHHHHHTCHHHHHHCT-ECEEEEEE--BTT--------T
T ss_pred ecCCCceeeeeHHHHHHHHHhcCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHcCCCcEEEEEEeccCC--------C
Confidence 889888776654443 22224567888988655433 344433 556889999776321 112222 1
Q ss_pred CceEEEEc-----------C--CCCHHHHHHHHHHhhcCCCe-EEEEEcCCCCChhHHHHHHHHHHHc-CCEEEE
Q 010070 242 PGGKVKLS-----------G--KLSSQYLTALLMAAPLALGN-VEIEIIDKLISVPYVEMTLKLMERF-GVFVEH 301 (519)
Q Consensus 242 ~~~~i~l~-----------g--d~Ssq~~salllAA~la~g~-~~I~~~~~~~s~~~v~~t~~~L~~~-G~~i~~ 301 (519)
-++++.+. + |-..|- -.++++ ++++|+ ++|+... -.+|....+.++++| |++++.
T Consensus 157 GgGeV~~~v~p~~~l~~i~g~vD~~~qd-qll~~m-ALa~g~vS~i~~g~---lt~h~~t~l~vi~~fl~v~f~v 226 (228)
T PF01137_consen 157 GGGEVQLRVPPVKPLKPIDGCVDEHLQD-QLLLFM-ALAKGDVSRIRVGP---LTLHTVTNLRVIEQFLGVKFKV 226 (228)
T ss_dssp B-EEEEEEEE-SSS---EECSS-HHHHH-HHHHHH-HCCTSSEEEEEESC---SSHHHHHHHHHHHHHCS-EEEE
T ss_pred CCeEEEEEEEccccccccchhhhhhhHH-HHHHHH-HhCCCCceEEEecC---CCHHHHHHHHHHHHHcCcEEEE
Confidence 12333221 2 111221 133333 478885 5887543 245777788888876 455443
No 36
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=93.70 E-value=4.2 Score=41.77 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=73.7
Q ss_pred CChhHHHHHHHHHHhcCCceEEecCCCChh-------HHHHHHHHHHc-CCEEEEcC-CcceEEEEcCCCCccccccCCC
Q 010070 96 GSKSLSNRILLLAALSEGTTVVDNLLSSED-------IHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTG 166 (519)
Q Consensus 96 gsKs~s~R~l~~AaLa~g~~~i~n~~~~~d-------v~~~l~aL~~l-Ga~v~~~~-~~~~l~I~g~~g~~~~~~~~~~ 166 (519)
|...+..-++.+|+++..+++|+|.-..|+ =...++++.++ +++++..+ +...++..+.. ... .
T Consensus 10 GGGQilR~alaLS~ltgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~--i~g-----G 82 (326)
T TIGR03399 10 GGGQILRTALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFIPGK--IRG-----G 82 (326)
T ss_pred CcHHHHHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCC--ccC-----C
Confidence 444555667889999999999998654332 22334444443 45554322 22455555431 221 2
Q ss_pred ceEEEeCCchhhhh---HHHHHHHHcCCCeEEEEcCCCCCC-CCChHHH----HHHHHhCCCEEEE
Q 010070 167 EIELFLGNAGTAMR---PLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDC 224 (519)
Q Consensus 167 ~~~l~~g~sgt~~r---~L~a~~~~~~~~~~~~l~G~~~l~-~Rp~~~l----~~~L~~lGa~v~~ 224 (519)
...+++|.+|+... .+++++..+..+.++++.|+-.-. +.+++.+ +-.|++||++++.
T Consensus 83 ~~~~d~gtagSi~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 148 (326)
T TIGR03399 83 DYRFDIGTAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAEL 148 (326)
T ss_pred eEEEeCCCChhhHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 45788888877543 455555555677889999865543 3444444 4567899997664
No 37
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=93.51 E-value=1.6 Score=44.37 Aligned_cols=118 Identities=15% Similarity=0.236 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCceEEecCCC-------ChhHHHHHHHHHHc-CCEEEEcC-CcceEEEEcCCCCccccccCCCceEE
Q 010070 100 LSNRILLLAALSEGTTVVDNLLS-------SEDIHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIEL 170 (519)
Q Consensus 100 ~s~R~l~~AaLa~g~~~i~n~~~-------~~dv~~~l~aL~~l-Ga~v~~~~-~~~~l~I~g~~g~~~~~~~~~~~~~l 170 (519)
+..-+|.+|+++..+++|.|.-. .+--...+++++.+ +++++-.+ +...+..... .+... +..+
T Consensus 16 ilRtal~LS~ltG~pvrI~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~GS~~l~F~Pg--~i~gG-----~~~~ 88 (341)
T COG0430 16 ILRTALALSALTGKPVRIENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAELGSTELVFRPG--KIRGG-----DYRV 88 (341)
T ss_pred eehHHHHHHHhcCCceEEEEEccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeeccceEEEEecc--ceeCc-----eEEE
Confidence 33446789999999999999643 22233344444443 66665433 2234444332 22222 4577
Q ss_pred EeCCchhh---hhHHHHHHHHcCCCeEEEEcCCCCC-CCCChHHH----HHHHHhCCCEEEE
Q 010070 171 FLGNAGTA---MRPLTAAVTAAGGNLSYILDGVPRM-RERPIGDL----VTGLKQLGADVDC 224 (519)
Q Consensus 171 ~~g~sgt~---~r~L~a~~~~~~~~~~~~l~G~~~l-~~Rp~~~l----~~~L~~lGa~v~~ 224 (519)
++|.+|+. ++.|+.++..+.++.+++++|+-.- ...|++.+ +..|+++|++.+.
T Consensus 89 digTAGsi~LvlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~~~l 150 (341)
T COG0430 89 DIGTAGSITLVLQTLLPLLLFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIECEL 150 (341)
T ss_pred EecCCCceeeeHHHHHHHhhcCCCCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccceEE
Confidence 88876663 4667777666678899999986543 35566555 6789999998764
No 38
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=93.43 E-value=3.6 Score=42.48 Aligned_cols=122 Identities=17% Similarity=0.243 Sum_probs=73.7
Q ss_pred CChhHHHHHHHHHHhcCCceEEecCCCChhH----HHHH---HHHHHc-CCEEEEcC-CcceEEEEcCCCCccccccCCC
Q 010070 96 GSKSLSNRILLLAALSEGTTVVDNLLSSEDI----HHML---DALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTG 166 (519)
Q Consensus 96 gsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv----~~~l---~aL~~l-Ga~v~~~~-~~~~l~I~g~~g~~~~~~~~~~ 166 (519)
|.-.+..-++++|+++..+++|+|.-..|+- ..++ +++.++ +++++..+ +...++..+. .+.. .
T Consensus 12 GGgQilR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~i~~~~v~g~~~gst~l~f~Pg--~i~~-----g 84 (343)
T PRK04204 12 GGGQILRTALALSAITGKPFRITNIRANRPNPGLLRQHLTAVKAAAEICNAEVEGAELGSQELVFIPG--PIRG-----G 84 (343)
T ss_pred ccHHHHHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEEeeecCceEEEEECC--CccC-----C
Confidence 4445556678899999999999986433221 3334 444443 45654332 2235555443 1222 1
Q ss_pred ceEEEeCCchhhhh---HHHHHHHHcCCCeEEEEcCCCCCC-CCChHHH----HHHHHhCCCEEEE
Q 010070 167 EIELFLGNAGTAMR---PLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDC 224 (519)
Q Consensus 167 ~~~l~~g~sgt~~r---~L~a~~~~~~~~~~~~l~G~~~l~-~Rp~~~l----~~~L~~lGa~v~~ 224 (519)
...+++|.+|+... .+++++..+..+.++++.|+-.-. +.|++.+ +-.|++||++++.
T Consensus 85 ~~~~d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 150 (343)
T PRK04204 85 DYRFDIGTAGSITLVLQTVLPALLFADGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEI 150 (343)
T ss_pred eEEEecCCCcchhhHHHHHHHHHhcCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 45788888777543 455555555567889999865433 4455544 5567999998764
No 39
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=93.14 E-value=4.5 Score=41.52 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=73.2
Q ss_pred CChhHHHHHHHHHHhcCCceEEecCCCChh-------HHHHHHHHHHc-CCEEEEcC-CcceEEEEcCCCCccccccCCC
Q 010070 96 GSKSLSNRILLLAALSEGTTVVDNLLSSED-------IHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTG 166 (519)
Q Consensus 96 gsKs~s~R~l~~AaLa~g~~~i~n~~~~~d-------v~~~l~aL~~l-Ga~v~~~~-~~~~l~I~g~~g~~~~~~~~~~ 166 (519)
|...+..-++.+|+++..+++|+|.-..|+ =...++++.++ +++++..+ +...++..+.. +.. .
T Consensus 8 GGgQilR~alaLS~ltg~pv~I~nIR~~r~~PGL~~qh~~~l~ll~~i~~g~~~g~~~gst~l~f~Pg~--i~g-----G 80 (326)
T cd00874 8 GGGQILRTALALSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAELGSTELEFEPGK--IKG-----G 80 (326)
T ss_pred CchHHHHHHHHHHHHhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCC--ccC-----C
Confidence 444455567889999999999998643322 22344555554 45554322 22455555431 222 1
Q ss_pred ceEEEeCCchhhhh---HHHHHHHHcCCCeEEEEcCCCCCC-CCChHHH----HHHHHhCCCEEEE
Q 010070 167 EIELFLGNAGTAMR---PLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDC 224 (519)
Q Consensus 167 ~~~l~~g~sgt~~r---~L~a~~~~~~~~~~~~l~G~~~l~-~Rp~~~l----~~~L~~lGa~v~~ 224 (519)
...+++|.+|+... .+++++..+..+.++++.|+-.-. +.|++.+ +-.|++||++++.
T Consensus 81 ~~~~d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l 146 (326)
T cd00874 81 DYEFDIGTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAEL 146 (326)
T ss_pred cEEEeCCCCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 45788888877654 455555545567889999865543 3444444 4567899997764
No 40
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=91.05 E-value=9.1 Score=39.56 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=72.4
Q ss_pred CChhHHHHHHHHHHhcCCceEEecCCCChh-------HHHHHHHHHHc-CCEEEEc-CCcceEEEEcCCCCccccccCCC
Q 010070 96 GSKSLSNRILLLAALSEGTTVVDNLLSSED-------IHHMLDALKKL-GLNVEED-FAMKRAIVEGCGGLFPLAKQQTG 166 (519)
Q Consensus 96 gsKs~s~R~l~~AaLa~g~~~i~n~~~~~d-------v~~~l~aL~~l-Ga~v~~~-~~~~~l~I~g~~g~~~~~~~~~~ 166 (519)
|...+....|.+|+++..+++|+|.-..|+ =...++++.++ +++++.. .+...++..+. .+...
T Consensus 8 gGgQilR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~g~~~g~~~gst~l~F~PG--~i~gG----- 80 (341)
T cd00875 8 KGSNFFRQRLVLATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTGTTLIYKPG--LITGG----- 80 (341)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcEEeeecCceEEEEECC--CccCC-----
Confidence 344566678899999999999999643322 22445555555 5655432 22235555443 12222
Q ss_pred ceEEEeCCchhhhh---HHHHHHHHcCCCeEEEEcCCCCCC-CCChHHH----HHHHHhCCCE
Q 010070 167 EIELFLGNAGTAMR---PLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGAD 221 (519)
Q Consensus 167 ~~~l~~g~sgt~~r---~L~a~~~~~~~~~~~~l~G~~~l~-~Rp~~~l----~~~L~~lGa~ 221 (519)
...+++|.+|+... .++.++..+..+.++++.|+-.-. +.|++.+ +-.|++||+.
T Consensus 81 ~~~~d~gtagSI~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~ 143 (341)
T cd00875 81 VLNHDCPVSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred cEEEeCCCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 46788998877554 344444444567889999865432 4555554 4558999994
No 41
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=90.96 E-value=7.4 Score=40.55 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCceEEecCCCCh-------hHHHHHHHHHHc-CCEEEEc-CCcceEEEEcCCCCccccccCCCceEEEe
Q 010070 102 NRILLLAALSEGTTVVDNLLSSE-------DIHHMLDALKKL-GLNVEED-FAMKRAIVEGCGGLFPLAKQQTGEIELFL 172 (519)
Q Consensus 102 ~R~l~~AaLa~g~~~i~n~~~~~-------dv~~~l~aL~~l-Ga~v~~~-~~~~~l~I~g~~g~~~~~~~~~~~~~l~~ 172 (519)
.-+|.+|+++..+++|+|.-..| -=...++++.++ ++++... .+...++..+. .+... ...+++
T Consensus 10 R~alaLS~itgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg--~i~gG-----~~~~d~ 82 (360)
T TIGR03400 10 RQRLVLSTLSGKPVRITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPG--LITGG-----SVTHEC 82 (360)
T ss_pred HHHHHHHHhcCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECC--cccCC-----eEEEeC
Confidence 34678899999999999864332 223345555555 5666532 23345555442 22222 467889
Q ss_pred CCchhhhh---HHHHHHHHcCCCeEEEEcCCCCCC-CCChHHH----HHHHHhCCC---EEEE
Q 010070 173 GNAGTAMR---PLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGA---DVDC 224 (519)
Q Consensus 173 g~sgt~~r---~L~a~~~~~~~~~~~~l~G~~~l~-~Rp~~~l----~~~L~~lGa---~v~~ 224 (519)
|.+|+... .++.++..+..+.++++.|+-... +.|++.+ +-.|+.||+ +++.
T Consensus 83 gtagSitl~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l 145 (360)
T TIGR03400 83 PTTRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLEL 145 (360)
T ss_pred CCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEE
Confidence 98877543 455544545567889999865432 4455543 556899999 6653
No 42
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=89.97 E-value=6.1 Score=40.81 Aligned_cols=120 Identities=21% Similarity=0.177 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHhcCCceEEecCCCCh-------hHHHHHHHHHHc-CCEEEEc-CCcceEEEEcCCCCccccccCCCce
Q 010070 98 KSLSNRILLLAALSEGTTVVDNLLSSE-------DIHHMLDALKKL-GLNVEED-FAMKRAIVEGCGGLFPLAKQQTGEI 168 (519)
Q Consensus 98 Ks~s~R~l~~AaLa~g~~~i~n~~~~~-------dv~~~l~aL~~l-Ga~v~~~-~~~~~l~I~g~~g~~~~~~~~~~~~ 168 (519)
..+..-.|.+|+++..+++|+|.-..| -=...++++.++ +++++.. .+...++..+. .+.. ...
T Consensus 10 gQilR~alaLS~ltgkpvrI~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~~~g~~~gst~l~F~Pg--~i~g-----G~~ 82 (338)
T cd00295 10 CEILRHALSLAMISGQPFRIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAELGGQRFIFRPG--NIIG-----GDV 82 (338)
T ss_pred hHHHHHHHHHHHhhCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECC--cccC-----CeE
Confidence 345555788999999999999854322 222344555554 4555432 22235555443 1222 246
Q ss_pred EEEeCCchhhh---hHHHHHHHHcCCCeEEEEcCCCCCC-CCChHHH----HHHHHhCCCEEEE
Q 010070 169 ELFLGNAGTAM---RPLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDC 224 (519)
Q Consensus 169 ~l~~g~sgt~~---r~L~a~~~~~~~~~~~~l~G~~~l~-~Rp~~~l----~~~L~~lGa~v~~ 224 (519)
.+++|.+|+.. ..+++++..+.++.++++.|+-.-. +.|++.+ +-.|++||++++.
T Consensus 83 ~~d~gtagSi~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~sPsvD~~~~v~lp~l~~~G~~~~~ 146 (338)
T cd00295 83 RFACGSAGGCGLFLEPILIACLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIHGDE 146 (338)
T ss_pred EEeCCCCcchHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHhCCcccc
Confidence 78899877754 3455555555677899999865432 4555554 5677999997653
No 43
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=89.10 E-value=5.1 Score=40.81 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=68.6
Q ss_pred hhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCC--hHHHHHH---HHh-CCCEEEEeCCCCcCcEEEEcCCCCCceEEEEc
Q 010070 176 GTAMRPLTAAVTAAGGNLSYILDGVPRMRERP--IGDLVTG---LKQ-LGADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (519)
Q Consensus 176 gt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp--~~~l~~~---L~~-lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l~ 249 (519)
|..+|.-+++.+..+.+.+ +.+--.=+.+| ...|+.+ ++. .+++++..+- +...+...+ +.+++++++++
T Consensus 14 GQilRtal~LS~ltG~pvr--I~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~-GS~~l~F~P-g~i~gG~~~~d 89 (341)
T COG0430 14 GQILRTALALSALTGKPVR--IENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAEL-GSTELVFRP-GKIRGGDYRVD 89 (341)
T ss_pred ceeehHHHHHHHhcCCceE--EEEEccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeec-cceEEEEec-cceeCceEEEE
Confidence 3455665555555444444 44311111122 4444444 433 5777775432 322344444 36888877765
Q ss_pred ----CCCCHHHHHHHHHHhhcCCCeEEEEEcCC-----CCChhHH-HHHHHHHHHcCCEEEE
Q 010070 250 ----GKLSSQYLTALLMAAPLALGNVEIEIIDK-----LISVPYV-EMTLKLMERFGVFVEH 301 (519)
Q Consensus 250 ----gd~Ssq~~salllAA~la~g~~~I~~~~~-----~~s~~~v-~~t~~~L~~~G~~i~~ 301 (519)
|+++ -++-++|.++++++++++|++.+- ....+|+ ..++.+|++||+..+.
T Consensus 90 igTAGsi~-LvlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~~~l 150 (341)
T COG0430 90 IGTAGSIT-LVLQTLLPLLLFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIECEL 150 (341)
T ss_pred ecCCCcee-eeHHHHHHHhhcCCCCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccceEE
Confidence 2332 134588889999999999887642 1122344 4588999999988764
No 44
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=85.83 E-value=33 Score=33.33 Aligned_cols=185 Identities=22% Similarity=0.206 Sum_probs=83.0
Q ss_pred HHHHHHhhcCCCeEEEEEcCCCCChh----HHHHHHHHHHHc-CCEEEEe-CceeEEEEecCCcccCCcccc-ccCChhh
Q 010070 258 TALLMAAPLALGNVEIEIIDKLISVP----YVEMTLKLMERF-GVFVEHS-DSWDRFFIQGGQKYKSPGNAF-VEGDASS 330 (519)
Q Consensus 258 salllAA~la~g~~~I~~~~~~~s~~----~v~~t~~~L~~~-G~~i~~~-~~~~~i~I~g~~~l~~~~~~~-i~~D~~~ 330 (519)
+++.+++ +++.+++|.+.......| +-...+++++++ +..++.. .+...+...++ .++ +.++. ..+...+
T Consensus 15 ~~laLS~-l~gkpi~I~~IR~~r~~PGL~~qh~~~l~ll~~it~g~~~g~~~~st~l~f~Pg-~i~-~g~~~~d~~tags 91 (228)
T PF01137_consen 15 TALALSA-LTGKPIRIENIRANRPNPGLRPQHLSALRLLAKITNGSVIGISLGSTELTFRPG-EIR-GGDYTFDCGTAGS 91 (228)
T ss_dssp HHHHHHH-HHT--EEEESTTTTSSS-S--HHHHHHHHHHHHHCCSEEEEESTTSSEEEEE---EE--ECEEEEEEETTCB
T ss_pred HHHHHHh-ccCCCEEEEEEecCCCCCcccHHHHHHHHHHHHhcCCeecceecCCcEEEEECC-Ccc-CCcEEEecCCCce
Confidence 4566654 788899999864222222 222345666554 4555532 22235655553 233 23332 2233334
Q ss_pred HHHHHH-H---HHhcCC--eEEEEccCCCCCc--ch---hHHHHHHHHcCCEEEEeCCeEEEeCC-CCC-------CCCC
Q 010070 331 ASYFVA-G---AAVTGG--TVTVEGCGTSSLQ--GD---VKFAEVLEKMGAKVTWTENSVTVTGP-PRD-------PYGR 391 (519)
Q Consensus 331 a~~~la-~---aa~~~g--~v~i~g~~~~~~~--~d---~~~~~~L~~mGa~v~~~~~~i~i~g~-~~~-------~~~~ 391 (519)
.++++- + ++++++ +++++|....... -| ..++..|++||++.+.+ +.-.|- |.. ....
T Consensus 92 i~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lP~l~~~G~~~~l~---i~krG~~P~GgGeV~~~v~p~ 168 (228)
T PF01137_consen 92 ISLVLQALLPLLLFAKGPSRLTLTGGTNVPFSPSVDYIRQVFLPLLRKFGIPVELK---IIKRGFYPKGGGEVQLRVPPV 168 (228)
T ss_dssp HHHHHHHHCCCHCCSSSEEEEEEEEBSBBTTS--HHHHHHTCHHHHHHCT-ECEEE---EEE--BTTTB-EEEEEEEE-S
T ss_pred eeeeHHHHHHHHHhcCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHcCCCcEEE---EEEeccCCCCCeEEEEEEEcc
Confidence 444442 2 334555 5666665543332 23 45677899999988733 111111 100 0000
Q ss_pred CCcceeEEeCCCCCcHHHHHHHHHHcCCCC-EEEecccccccccchhHHHHHHHHHH-cCCeEEEe
Q 010070 392 KHLRAVDVNMNKMPDVAMTLAVVALFADGP-TAIRDVASWRVKETERMIAICTELRK-LGATVEEG 455 (519)
Q Consensus 392 ~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~-s~I~~~~~~r~kEsdR~~~~~~~L~k-lGa~i~~~ 455 (519)
+.+++++ ..-|.-++..+++.++.++|+ ++|+-.. + |+........+++ +|++++++
T Consensus 169 ~~l~~i~--g~vD~~~qdqll~~mALa~g~vS~i~~g~-l----t~h~~t~l~vi~~fl~v~f~v~ 227 (228)
T PF01137_consen 169 KPLKPID--GCVDEHLQDQLLLFMALAKGDVSRIRVGP-L----TLHTVTNLRVIEQFLGVKFKVE 227 (228)
T ss_dssp SS---EE--CSS-HHHHHHHHHHHHCCTSSEEEEEESC-S----SHHHHHHHHHHHHHCS-EEEE-
T ss_pred ccccccc--hhhhhhhHHHHHHHHHhCCCCceEEEecC-C----CHHHHHHHHHHHHHcCcEEEEe
Confidence 1122222 112223566677777889996 5666422 1 3334445555554 47777654
No 45
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=85.53 E-value=23 Score=36.85 Aligned_cols=121 Identities=21% Similarity=0.233 Sum_probs=68.1
Q ss_pred hhhhhHHHHHHHHcCCCeEEE-EcCCCCCCCCC-h-HHH---HHHHHhC-CCEEEEeCCCCcCcEEEEcCCCCCceEEEE
Q 010070 176 GTAMRPLTAAVTAAGGNLSYI-LDGVPRMRERP-I-GDL---VTGLKQL-GADVDCILGTNCPPVRINGKGGLPGGKVKL 248 (519)
Q Consensus 176 gt~~r~L~a~~~~~~~~~~~~-l~G~~~l~~Rp-~-~~l---~~~L~~l-Ga~v~~~~~~~~~pi~I~g~~~l~~~~i~l 248 (519)
+..+|.-+++.+..+.+.++. |... + .+| + ..+ ++.+.++ ++++...+. +...+...++ .+.++++++
T Consensus 6 ~QilR~alaLS~itgkpv~I~nIR~~-R--~~PGL~~qhl~~l~l~~~i~~a~~~g~~~-gst~l~F~Pg-~i~gG~~~~ 80 (360)
T TIGR03400 6 SRNFRQRLVLSTLSGKPVRITKIRSD-D--ENPGLRDYEVSFLRLLEKVTNGSKIEISY-TGTTVIYKPG-LITGGSVTH 80 (360)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEeccC-C--CCCCcHHHHHHHHHHHHHhcCCeEeeeec-CceEEEEECC-cccCCeEEE
Confidence 456676666666544444433 2221 1 122 1 222 5666554 677664332 3334666654 677888877
Q ss_pred cCC--CCH-HHHHHHHHHhhcCCCeEEEEEcC--C---CCChhHH-HHHHHHHHHcCC---EEEE
Q 010070 249 SGK--LSS-QYLTALLMAAPLALGNVEIEIID--K---LISVPYV-EMTLKLMERFGV---FVEH 301 (519)
Q Consensus 249 ~gd--~Ss-q~~salllAA~la~g~~~I~~~~--~---~~s~~~v-~~t~~~L~~~G~---~i~~ 301 (519)
+-. -|- -++-++|..+++++++++|++.+ + ..+.+|+ ..++.+|++||+ +++.
T Consensus 81 d~gtagSitl~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l 145 (360)
T TIGR03400 81 ECPTTRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLEL 145 (360)
T ss_pred eCCCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEE
Confidence 521 222 24457777888899887776543 2 1234454 347889999999 6654
No 46
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=85.35 E-value=33 Score=35.47 Aligned_cols=122 Identities=14% Similarity=0.207 Sum_probs=70.3
Q ss_pred chhhhhHHHHHHHHcCCCeEEE-EcCCCCCCCCC-hH-HH---HHHHHh-CCCEEEEeCCCCcCcEEEEcCCCCCceEEE
Q 010070 175 AGTAMRPLTAAVTAAGGNLSYI-LDGVPRMRERP-IG-DL---VTGLKQ-LGADVDCILGTNCPPVRINGKGGLPGGKVK 247 (519)
Q Consensus 175 sgt~~r~L~a~~~~~~~~~~~~-l~G~~~l~~Rp-~~-~l---~~~L~~-lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~ 247 (519)
.|..+|.-+++.+..+.+.++. |... + ++| +. .+ ++.+.+ .+++++..+- +...+...++ .+.+++++
T Consensus 9 GgQilR~alaLS~ltgkpvrI~nIR~~-r--~~PGL~~qhl~~l~ll~~i~~g~~~g~~~-gst~l~F~Pg-~i~gG~~~ 83 (338)
T cd00295 9 GCEILRHALSLAMISGQPFRIEGIRAD-E--ADPGLKDQHLSALKAAEEICGASVEEAEL-GGQRFIFRPG-NIIGGDVR 83 (338)
T ss_pred chHHHHHHHHHHHhhCCCEEEEEeccC-C--CCCCcHHHHHHHHHHHHHhcCCeEeeeec-CceEEEEECC-cccCCeEE
Confidence 4566787776666645454443 3321 1 222 22 22 555544 4666664322 2224666554 67788887
Q ss_pred EcCC--CCHH-HHHHHHHHhhcCCCeEEEEEcC--C---CCChhHH-HHHHHHHHHcCCEEEE
Q 010070 248 LSGK--LSSQ-YLTALLMAAPLALGNVEIEIID--K---LISVPYV-EMTLKLMERFGVFVEH 301 (519)
Q Consensus 248 l~gd--~Ssq-~~salllAA~la~g~~~I~~~~--~---~~s~~~v-~~t~~~L~~~G~~i~~ 301 (519)
++-. -|-- ++-++|..+++++++++|++.+ + ..+.+|+ ..++.+|++||+.++.
T Consensus 84 ~d~gtagSi~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~sPsvD~~~~v~lp~l~~~G~~~~~ 146 (338)
T cd00295 84 FACGSAGGCGLFLEPILIACLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIHGDE 146 (338)
T ss_pred EeCCCCcchHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHhCCcccc
Confidence 7632 2222 3457888888999988887653 1 2244454 4578899999997653
No 47
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=84.19 E-value=44 Score=34.60 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=69.6
Q ss_pred chhhhhHHHHHHHHcCCCeEEE-EcCCCCCCCCC--hHHH---HHHHHh-CCCEEEEeCCCCcCcEEEEcCCCCCceEEE
Q 010070 175 AGTAMRPLTAAVTAAGGNLSYI-LDGVPRMRERP--IGDL---VTGLKQ-LGADVDCILGTNCPPVRINGKGGLPGGKVK 247 (519)
Q Consensus 175 sgt~~r~L~a~~~~~~~~~~~~-l~G~~~l~~Rp--~~~l---~~~L~~-lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~ 247 (519)
.|..+|.-+++.+..+.+.++. |... + +.| -..| ++.+.+ .+++++..+- +...+...++ .+.+++++
T Consensus 13 GgQilR~alaLS~ltgkpv~I~nIR~~-r--~~PGL~~qhl~~l~l~~~i~~~~v~g~~~-gst~l~f~Pg-~i~~g~~~ 87 (343)
T PRK04204 13 GGQILRTALALSAITGKPFRITNIRAN-R--PNPGLLRQHLTAVKAAAEICNAEVEGAEL-GSQELVFIPG-PIRGGDYR 87 (343)
T ss_pred cHHHHHHHHHHHHhhCCCEEEEEeccC-C--CCCCchHHHHHHHHHHHHHcCCeEEeeec-CceEEEEECC-CccCCeEE
Confidence 3556787666666544444443 3321 1 222 1333 444444 4667664332 3334666654 67788887
Q ss_pred EcCC--CCHH-HHHHHHHHhhcCCCeEEEEEcC--C---CCChhHH-HHHHHHHHHcCCEEEE
Q 010070 248 LSGK--LSSQ-YLTALLMAAPLALGNVEIEIID--K---LISVPYV-EMTLKLMERFGVFVEH 301 (519)
Q Consensus 248 l~gd--~Ssq-~~salllAA~la~g~~~I~~~~--~---~~s~~~v-~~t~~~L~~~G~~i~~ 301 (519)
++-. -|-. ++-++|..+++++++++|++.+ + ..+.+|+ ..++.+|++||+.++.
T Consensus 88 ~d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 150 (343)
T PRK04204 88 FDIGTAGSITLVLQTVLPALLFADGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEI 150 (343)
T ss_pred EecCCCcchhhHHHHHHHHHhcCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 7631 2222 3457777788898888877653 1 1234454 4478899999998764
No 48
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=84.18 E-value=39 Score=34.97 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=68.3
Q ss_pred chhhhhHHHHHHHHcCCCeEEE-EcCCCCCCCCCh-HHH---HHHHHhC-CCEEEEeCCCCcCcEEEEcCCCCCceEEEE
Q 010070 175 AGTAMRPLTAAVTAAGGNLSYI-LDGVPRMRERPI-GDL---VTGLKQL-GADVDCILGTNCPPVRINGKGGLPGGKVKL 248 (519)
Q Consensus 175 sgt~~r~L~a~~~~~~~~~~~~-l~G~~~l~~Rp~-~~l---~~~L~~l-Ga~v~~~~~~~~~pi~I~g~~~l~~~~i~l 248 (519)
.|..+|.-+++.+..+.+.++. |..+.. +... ..+ ++.+.++ ++.++..+. +...+...++ .+.++++++
T Consensus 9 GgQilR~alaLS~ltgkpv~I~nIR~~r~--~PGL~~qhl~~l~ll~~it~g~~~g~~~-gst~l~F~PG-~i~gG~~~~ 84 (341)
T cd00875 9 GSNFFRQRLVLATLSGKPIIIKKIRSDDT--NPGLRDHEVSFLRLLEKVTNGSVIEISY-TGTTLIYKPG-LITGGVLNH 84 (341)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCC--CCChHHHHHHHHHHHHHHcCCcEEeeec-CceEEEEECC-CccCCcEEE
Confidence 5778887777766655444443 332211 1222 223 5555553 666654332 2224555554 577777776
Q ss_pred cCC--CC-HHHHHHHHHHhhcCCCeEEEEEcC--C---CCChhHH-HHHHHHHHHcCCE
Q 010070 249 SGK--LS-SQYLTALLMAAPLALGNVEIEIID--K---LISVPYV-EMTLKLMERFGVF 298 (519)
Q Consensus 249 ~gd--~S-sq~~salllAA~la~g~~~I~~~~--~---~~s~~~v-~~t~~~L~~~G~~ 298 (519)
+-. -| +-++-++|+++++++++++|++.+ + ..+.+|+ ..++.+|++||+.
T Consensus 85 d~gtagSI~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~ 143 (341)
T cd00875 85 DCPVSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred eCCCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 532 12 234568888888999887776543 2 1234454 3477889999994
No 49
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=84.04 E-value=36 Score=34.93 Aligned_cols=123 Identities=19% Similarity=0.223 Sum_probs=69.0
Q ss_pred chhhhhHHHHHHHHcCCCeEEE-EcCCCCCCCCCh-HHH---HHHHHh-CCCEEEEeCCCCcCcEEEEcCCCCCceEEEE
Q 010070 175 AGTAMRPLTAAVTAAGGNLSYI-LDGVPRMRERPI-GDL---VTGLKQ-LGADVDCILGTNCPPVRINGKGGLPGGKVKL 248 (519)
Q Consensus 175 sgt~~r~L~a~~~~~~~~~~~~-l~G~~~l~~Rp~-~~l---~~~L~~-lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l 248 (519)
.|..+|.-+++.+..+.+.++. |..... +..+ ..+ ++.+.+ .+++++..+- +...++..++ .+.++++++
T Consensus 11 GGQilR~alaLS~ltgkpv~I~nIR~~R~--~PGL~~qhl~~l~l~~~i~~a~~~g~~~-gst~l~F~Pg-~i~gG~~~~ 86 (326)
T TIGR03399 11 GGQILRTALSLSALTGKPVRIYNIRANRP--KPGLAPQHLTAVKAAAEICNAEVEGAEL-GSTELEFIPG-KIRGGDYRF 86 (326)
T ss_pred cHHHHHHHHHHHHhhCCCEEEEEeccCCC--CCCchHHHHHHHHHHHHHcCCeEeeeec-CceEEEEECC-CccCCeEEE
Confidence 3556787666666544444443 332211 1111 122 555544 4666654322 2334666654 577888877
Q ss_pred cCC--CCHH-HHHHHHHHhhcCCCeEEEEEcC--C---CCChhHH-HHHHHHHHHcCCEEEE
Q 010070 249 SGK--LSSQ-YLTALLMAAPLALGNVEIEIID--K---LISVPYV-EMTLKLMERFGVFVEH 301 (519)
Q Consensus 249 ~gd--~Ssq-~~salllAA~la~g~~~I~~~~--~---~~s~~~v-~~t~~~L~~~G~~i~~ 301 (519)
+-. -|-. ++-++|..+++++++++|++.+ + ..+.+|+ ..++.+|++||+.++.
T Consensus 87 d~gtagSi~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 148 (326)
T TIGR03399 87 DIGTAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAEL 148 (326)
T ss_pred eCCCChhhHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 632 2222 3457777788899888877653 1 1244554 4478899999997764
No 50
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=82.81 E-value=51 Score=33.88 Aligned_cols=122 Identities=22% Similarity=0.312 Sum_probs=68.5
Q ss_pred chhhhhHHHHHHHHcCCCeEEE-EcCCCCCCCCC-hH-HH---HHHHHh-CCCEEEEeCCCCcCcEEEEcCCCCCceEEE
Q 010070 175 AGTAMRPLTAAVTAAGGNLSYI-LDGVPRMRERP-IG-DL---VTGLKQ-LGADVDCILGTNCPPVRINGKGGLPGGKVK 247 (519)
Q Consensus 175 sgt~~r~L~a~~~~~~~~~~~~-l~G~~~l~~Rp-~~-~l---~~~L~~-lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~ 247 (519)
.|..+|.-+++.+..+.+.++. |... + +.| +. .+ ++.+.+ .+++++..+ .+...+...++ .+.+++++
T Consensus 9 GgQilR~alaLS~ltg~pv~I~nIR~~-r--~~PGL~~qh~~~l~ll~~i~~g~~~g~~-~gst~l~f~Pg-~i~gG~~~ 83 (326)
T cd00874 9 GGQILRTALALSAVTGKPVRIVNIRAN-R--SNPGLSRQHLTAVRAAARICNAEVEGAE-LGSTELEFEPG-KIKGGDYE 83 (326)
T ss_pred chHHHHHHHHHHHHhCCCEEEEEeccC-C--CCCCchHHHHHHHHHHHHHcCCeEeeee-cCceEEEEECC-CccCCcEE
Confidence 3556787666666544444443 3321 1 122 11 22 555544 466665432 23334666654 67788887
Q ss_pred EcCC--CCHH-HHHHHHHHhhcCCCeEEEEEcC--C---CCChhHH-HHHHHHHHHcCCEEEE
Q 010070 248 LSGK--LSSQ-YLTALLMAAPLALGNVEIEIID--K---LISVPYV-EMTLKLMERFGVFVEH 301 (519)
Q Consensus 248 l~gd--~Ssq-~~salllAA~la~g~~~I~~~~--~---~~s~~~v-~~t~~~L~~~G~~i~~ 301 (519)
++-. -|-- ++-++|..+++++++++|++.+ + ..+.+|+ ..++.+|++||+.++.
T Consensus 84 ~d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l 146 (326)
T cd00874 84 FDIGTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAEL 146 (326)
T ss_pred EeCCCCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 6532 2322 3457777788898888877653 1 1234454 3477889999997764
No 51
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=69.15 E-value=1.4e+02 Score=30.60 Aligned_cols=126 Identities=23% Similarity=0.293 Sum_probs=69.9
Q ss_pred EEEEecCChhHHHHHHHHHHhcCCceEEecCC------CChhH-HHHHHHHHHc--CCEEEEcCCcceEEEEcCCCCccc
Q 010070 90 GTVTLPGSKSLSNRILLLAALSEGTTVVDNLL------SSEDI-HHMLDALKKL--GLNVEEDFAMKRAIVEGCGGLFPL 160 (519)
Q Consensus 90 G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~------~~~dv-~~~l~aL~~l--Ga~v~~~~~~~~l~I~g~~g~~~~ 160 (519)
+.+.--|. ..-.+.|.++.|+..++++...- .-+|. ...++.|+.+ |-.++++.....+.... + .+..
T Consensus 5 ~~~~f~g~-q~lr~~lvls~Lsg~pvrv~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~f~P-g-~i~G 81 (361)
T KOG3980|consen 5 GSYLFGGG-QALRLRLVLSTLSGKPVRVEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVIFTP-G-LILG 81 (361)
T ss_pred ceEEecch-HHHHHHHHHHHhcCCceEEEEeccCCCCCCchHHHHHHHHHHHhhcCCcEEEEeecccEEEEcC-c-eeeC
Confidence 34444343 34444567788888888888643 22343 4567777775 66666654322333322 1 1111
Q ss_pred cccCCCceEEEeCCc---hhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-----HHHHHhCCCEEE
Q 010070 161 AKQQTGEIELFLGNA---GTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-----VTGLKQLGADVD 223 (519)
Q Consensus 161 ~~~~~~~~~l~~g~s---gt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l-----~~~L~~lGa~v~ 223 (519)
. ....++..+ |..+.+|+.++.-+..+.++++.|.-+-...|-.|+ +..|++||+.-+
T Consensus 82 G-----~~~~dc~t~~~I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~~~ 147 (361)
T KOG3980|consen 82 G-----TVTHDCPTARSIGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVNDE 147 (361)
T ss_pred C-----ceEEeccCccceeeehhhHHhhhcccCCCeEEEEecccCCCCCcchHHHHHHHHHHHHHhCcCcc
Confidence 1 223444422 223446666555555788999999765444444443 567899999654
No 52
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=62.92 E-value=42 Score=27.99 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=43.6
Q ss_pred ccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccEEecCccHHHHHHHHHHHcCCCCEEEeCCccccccc
Q 010070 427 VASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTF 506 (519)
Q Consensus 427 ~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~i~~~~Dhr~ama~~laa~~~~~v~I~n~~~v~ks~ 506 (519)
+..+| ..++|..++-.+|+++|+++... ....|. .---+.+.. +|...++.|+|+-.+.+.++-. +-+.|
T Consensus 22 aktlk-e~p~R~~av~~~les~G~k~~~~---y~T~Ge-YD~V~i~Ea-pDda~~~~~~l~l~s~GnvRt~----TL~Af 91 (104)
T COG4274 22 AKTLK-ETPKRAAAVRALLESMGGKVKEQ---YWTLGE-YDVVAIVEA-PDDAVATRFSLALASRGNVRTV----TLRAF 91 (104)
T ss_pred HHHHh-hCHHHHHHHHHHHHHcCcEEEEE---EEeecc-ccEEEEEec-CCHHHHHHHHHHHHhcCCeEEE----eeccC
Confidence 34443 23589999999999999998752 222232 111234566 4666566666554333443322 12345
Q ss_pred c--cHHHHHHhc
Q 010070 507 P--DYFDVLDSV 516 (519)
Q Consensus 507 p--~F~~~L~~l 516 (519)
| +|.+.+.++
T Consensus 92 p~~~~~~~lkk~ 103 (104)
T COG4274 92 PVDAMLEILKKM 103 (104)
T ss_pred CHHHHHHHHhhc
Confidence 4 355555554
No 53
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=59.71 E-value=1.2e+02 Score=31.15 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=65.2
Q ss_pred HHHHHHhcCCeEEEEccCCCCCc---ch--hHHHHHHHHc--CCEEEEeCCeEEEeCCCCCCCCCCCccee--EEeCCCC
Q 010070 334 FVAGAAVTGGTVTVEGCGTSSLQ---GD--VKFAEVLEKM--GAKVTWTENSVTVTGPPRDPYGRKHLRAV--DVNMNKM 404 (519)
Q Consensus 334 ~la~aa~~~g~v~i~g~~~~~~~---~d--~~~~~~L~~m--Ga~v~~~~~~i~i~g~~~~~~~~~~l~g~--~v~~~~~ 404 (519)
.++++.+.+-++++.....++.. .| ..+++.|++. |-.++++..+-+|.-.|. .+.|. +.||+..
T Consensus 18 ~lvls~Lsg~pvrv~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~f~Pg------~i~GG~~~~dc~t~ 91 (361)
T KOG3980|consen 18 RLVLSTLSGKPVRVEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVIFTPG------LILGGTVTHDCPTA 91 (361)
T ss_pred HHHHHHhcCCceEEEEeccCCCCCCchHHHHHHHHHHHhhcCCcEEEEeecccEEEEcCc------eeeCCceEEeccCc
Confidence 45566677888999877654433 12 5788889885 667777655433332332 35553 4454421
Q ss_pred C---cHHHHHHHHHHcCCCCEEEe--cccccccccc-h--hHHHHHHHHHHcCCeEE
Q 010070 405 P---DVAMTLAVVALFADGPTAIR--DVASWRVKET-E--RMIAICTELRKLGATVE 453 (519)
Q Consensus 405 p---d~~~~Lavaa~~a~G~s~I~--~~~~~r~kEs-d--R~~~~~~~L~klGa~i~ 453 (519)
- -+.-.++.++.|++-+++|. ++-....+-+ | |+ .+...|++||+.-+
T Consensus 92 ~~I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~-~~lpvlkkFgv~~~ 147 (361)
T KOG3980|consen 92 RSIGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKA-VLLPVLKKFGVNDE 147 (361)
T ss_pred cceeeehhhHHhhhcccCCCeEEEEecccCCCCCcchHHHHH-HHHHHHHHhCcCcc
Confidence 1 12334566778999988764 3322111111 1 23 57778999999765
No 54
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=51.33 E-value=85 Score=25.67 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=36.9
Q ss_pred ccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccc-cEEecCccHHHHHHHHHHHcCCCCEE
Q 010070 433 KETERMIAICTELRKLGATVEEGPDYCVITPPEKLKV-AAIDTYDDHRMAMAFSLAACADVPVT 495 (519)
Q Consensus 433 kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~-~~i~~~~Dhr~ama~~laa~~~~~v~ 495 (519)
+.+||..++-+.++++|++++- .....|+ ..- ..++. +|...+++++++-.+.+.++
T Consensus 17 ~~~~R~~a~~~~~e~~Gg~l~~---~y~t~G~--yD~v~i~ea-PD~~~a~~~~l~i~~~G~v~ 74 (91)
T PF08734_consen 17 DSPDRAEAVRALIEALGGKLKS---FYWTLGE--YDFVVIVEA-PDDETAAAASLAIRSSGNVR 74 (91)
T ss_pred hcHHHHHHHHHHHHHcCCEEEE---EEEecCC--CCEEEEEEc-CCHHHHHHHHHHHHcCCceE
Confidence 3468999999999999999873 2223453 222 23566 67777777776654544444
No 55
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=33.26 E-value=2.2e+02 Score=28.99 Aligned_cols=135 Identities=21% Similarity=0.300 Sum_probs=80.0
Q ss_pred cceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEec-CCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcC-
Q 010070 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDN-LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGC- 154 (519)
Q Consensus 77 ~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n-~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~- 154 (519)
|+++.+.| ...|.|.+--+-..-.|. ++.++....+.++= +++..--+.+++-+|+.|++|.--.+.. |.+.
T Consensus 119 M~KiavGp--~~~G~vdl~~p~~~Nl~~-vA~algk~~~dltV~vLdRpRH~~lI~eiR~~Gari~Li~DGD---Va~ai 192 (321)
T TIGR00330 119 MEKLVVGP--GAKGTIDLNLPLADNLRN-VAKALGKPLSDLTVTILAKPRHDAVIAEMQQLGVRVFAIPDGD---VAASI 192 (321)
T ss_pred eeeeeECc--ccCCeecCCCCHHHHHHH-HHHHcCCChhHeEEEEEcCchHHHHHHHHHHcCCeEEEecccc---HHHHH
Confidence 78888988 458999886554444443 34456555555554 5666667789999999999997533210 1111
Q ss_pred CCCccccccCCCceEEEeCCchhhhhHHHHHHHH-cCCCeEEEE------cCCCCCCCCChHHH-HHHHHhCCCEEE
Q 010070 155 GGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTA-AGGNLSYIL------DGVPRMRERPIGDL-VTGLKQLGADVD 223 (519)
Q Consensus 155 ~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~-~~~~~~~~l------~G~~~l~~Rp~~~l-~~~L~~lGa~v~ 223 (519)
.--++. ....++.|-.|+..-.|.|+.+- .+++..-.+ .|+ .-.+|.+.+- .+-.+++|.++.
T Consensus 193 ~~~~~~-----s~vD~~~GiGGAPEGVlaAaAlkclGG~mqgrL~~~~~~~~~-~~~~~~~~~~e~~r~~~~GiD~~ 263 (321)
T TIGR00330 193 LTCMPD-----SEVDVLYGIGGAPEGVVSAAAIRALGGDMQGRLLPRHDVKGD-NEENRRIAEQEIARCKAMGVDVN 263 (321)
T ss_pred HHhCCC-----CCeeEEEEcCCChHHHHHHHHHHhcCceeEEEEccccccccc-cccccCCCHHHHHHHHHcCCChh
Confidence 000111 14578889888888777765442 233322222 232 2234555555 778888999654
No 56
>PF07833 Cu_amine_oxidN1: Copper amine oxidase N-terminal domain; InterPro: IPR012854 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents a domain found at the N-terminal of certain copper amine oxidases, as well as in related proteins such as cell wall hydrolase and N-acetylmuramoyl-L-alanine amidase. This domain consists of a five-stranded antiparallel beta-sheet twisted around an alpha helix [, ]. ; PDB: 1SPU_A 2WGQ_A 2WO0_A 1JRQ_A 1QAF_B 1D6U_B 1QAL_A 2WOF_A 1OAC_B 1QAK_A ....
Probab=32.37 E-value=41 Score=26.86 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=35.0
Q ss_pred HHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCC-CCCCCC
Q 010070 129 MLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP-RMRERP 207 (519)
Q Consensus 129 ~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~-~l~~Rp 207 (519)
+-.+.+.||++|.|+++...+++...+.. ..+..|+.-... .+..+.+.... .+..+.
T Consensus 9 l~~i~~~lg~~v~~d~~~~~v~i~~~~~~----------i~~~~~~~~~~~-----------ng~~~~l~~~~~~~~g~~ 67 (93)
T PF07833_consen 9 LRFIAEALGAKVSWDNKTKTVTITKGKKS----------IKLKVGSNEATV-----------NGKKITLSAPPVIINGRT 67 (93)
T ss_dssp HHHHHHHHT-EEEEETTTTEEEEEETTEE----------EEE-TT-SEEEE-----------TTEEEE-SS-BEEETTEE
T ss_pred HHHHHHHcCCEEEEEcCCcEEEEEeeece----------eeecCCCceeee-----------eccccccccCCEEeCCEE
Confidence 34677888999999876678888654321 122222111000 01223333222 123456
Q ss_pred hHHHHHHHHhCCCEEEEeCC
Q 010070 208 IGDLVTGLKQLGADVDCILG 227 (519)
Q Consensus 208 ~~~l~~~L~~lGa~v~~~~~ 227 (519)
|.++-.+-+.||++++++.+
T Consensus 68 yvp~~~l~~~~g~~v~~d~~ 87 (93)
T PF07833_consen 68 YVPLRFLSEAFGYKVSWDNE 87 (93)
T ss_dssp EEETTHHHHHHT--------
T ss_pred EEEHHHHHHHhCCccccccc
Confidence 66666666778999998654
No 57
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=30.55 E-value=1.4e+02 Score=30.76 Aligned_cols=84 Identities=19% Similarity=0.211 Sum_probs=50.9
Q ss_pred ChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCC
Q 010070 123 SEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPR 202 (519)
Q Consensus 123 ~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~ 202 (519)
.+.+..+.+++++.+..+.+......+.+.|.|+. . ...+++. ++.+.++++ .+.++...|...
T Consensus 46 ~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gtggd--g------~~t~nis-------t~~a~vlA~-~G~~V~kHG~r~ 109 (330)
T TIGR01245 46 PEEITGFAKAMREHAVKVPGRPVEDLVDIVGTGGD--G------ANTINIS-------TASAFVAAA-AGVKVAKHGNRS 109 (330)
T ss_pred HHHHHHHHHHHHHhCCCCCCccCCCcccccCCCCC--C------CCccccH-------HHHHHHHHh-CCCEEEEeCCCC
Confidence 56888899999999876654211122334454421 0 1133322 445544443 357888899877
Q ss_pred CCCCChHHHHHHHHhCCCEEEE
Q 010070 203 MRERPIGDLVTGLKQLGADVDC 224 (519)
Q Consensus 203 l~~Rp~~~l~~~L~~lGa~v~~ 224 (519)
+.++-- ..|.|+.+|+++..
T Consensus 110 ~~s~~G--s~d~le~LGi~~~~ 129 (330)
T TIGR01245 110 VSSKSG--SADVLEALGVNLDL 129 (330)
T ss_pred CCCCcc--HHHHHHHcCCCCCC
Confidence 766533 47999999998853
No 58
>PHA02627 hypothetical protein; Provisional
Probab=28.93 E-value=40 Score=25.29 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=22.2
Q ss_pred CCCChhHHHHHHHHHHcCCEEEEcCC
Q 010070 120 LLSSEDIHHMLDALKKLGLNVEEDFA 145 (519)
Q Consensus 120 ~~~~~dv~~~l~aL~~lGa~v~~~~~ 145 (519)
..+.+++..++++|..||+.|..+++
T Consensus 31 eided~i~ellniltelgcdvdfde~ 56 (73)
T PHA02627 31 EIDEDDITELLNILTELGCDVDFDED 56 (73)
T ss_pred eeCHHHHHHHHHHHHHhCCCcccccc
Confidence 34678999999999999999987654
No 59
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=27.85 E-value=2.3e+02 Score=31.20 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=59.4
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccCC
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~D 327 (519)
+.|+.|..-+.|||+|- ...|+ +..++.-..+.|++....+..... ..+-+.|.. + +-.-..+
T Consensus 221 l~g~~~~~q~~AfL~al-r~kge----------t~~El~g~~~a~~~~~~~~~~~~~-~~~D~~gtg-g----dg~~t~n 283 (534)
T PRK14607 221 TDGNATDAQIAGFLTAL-RMKGE----------TADELAGFASVMREKSRHIPAPSP-RTVDTCGTG-G----DGFGTFN 283 (534)
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCcCCCCCC-CceEEccCC-C----CCCCccc
Confidence 56777766667887764 44444 245677888999988876643221 123343321 1 1011223
Q ss_pred hhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEe
Q 010070 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 375 (519)
Q Consensus 328 ~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~ 375 (519)
+++++-++++ ..|-++..+|-...+-+ ..-.++|+.+|+++...
T Consensus 284 ist~~a~v~A--~~G~~V~kHG~r~~ss~--~Gsadvle~lGv~~~~~ 327 (534)
T PRK14607 284 ISTTSAFVVA--AAGVPVAKHGNRAVSSK--SGSADVLEALGVKLEMT 327 (534)
T ss_pred cHHHHHHHHH--hCCCcEEEECCCCCCCC--ccHHHHHHHcCCCCCCC
Confidence 4443333332 23667777774432223 34568999999988644
No 60
>PF06076 Orthopox_F14: Orthopoxvirus F14 protein; InterPro: IPR009280 This family consists of several short Orthopoxvirus F14 proteins. The function of this protein is unknown.
Probab=26.45 E-value=47 Score=24.89 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.3
Q ss_pred CCCChhHHHHHHHHHHcCCEEEEcCC
Q 010070 120 LLSSEDIHHMLDALKKLGLNVEEDFA 145 (519)
Q Consensus 120 ~~~~~dv~~~l~aL~~lGa~v~~~~~ 145 (519)
..+.+++..++++|..||+.|..+++
T Consensus 31 eided~i~ellniltelgcdvdfde~ 56 (73)
T PF06076_consen 31 EIDEDDIMELLNILTELGCDVDFDEN 56 (73)
T ss_pred eeCHHHHHHHHHHHHHhCCCcccccc
Confidence 35679999999999999999987664
No 61
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=25.43 E-value=2.2e+02 Score=29.44 Aligned_cols=108 Identities=25% Similarity=0.227 Sum_probs=58.5
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccCC
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~D 327 (519)
+.|+.+...+.++|+|- ...|+ ...++.-..+.|++....+..... ..+-+-|.. +. +.+ --+
T Consensus 30 l~g~~~~~qi~A~L~Al-r~Kge----------t~eEi~G~~~am~~~~~~~~~p~~-~~vDi~GTG-GD-g~~---T~N 92 (338)
T COG0547 30 LSGEASPAQIGAFLTAL-RIKGE----------TPEEIAGFAEAMREHAPKLPVPAA-DPVDIVGTG-GD-GAN---TIN 92 (338)
T ss_pred hcCCCCHHHHHHHHHHH-HHhcC----------CHHHHHHHHHHHHHhcccCCCCCC-CCCCeecCC-CC-CCC---ccc
Confidence 45666666667787764 33444 234677788899986555543322 112222221 11 111 124
Q ss_pred hhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeC
Q 010070 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 376 (519)
Q Consensus 328 ~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~ 376 (519)
+++++-|++++ .|-+|..+|-...+-+ ..-.|+|+.+|++++...
T Consensus 93 iSt~aA~v~A~--~Gv~VaKHGnrs~sSk--sGsaDvleaLGv~l~~~~ 137 (338)
T COG0547 93 ISTAAAIVAAA--AGVPVAKHGNRSVSSK--SGSADVLEALGVNLELSP 137 (338)
T ss_pred chHHHHHHHHh--CCCcEEeECCCCCCCC--CcHHHHHHHcCCCCCCCH
Confidence 55554444433 2556666664433333 345899999999998743
No 62
>PRK10850 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr; Provisional
Probab=25.40 E-value=3.6e+02 Score=21.69 Aligned_cols=80 Identities=20% Similarity=0.159 Sum_probs=49.7
Q ss_pred eEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEE
Q 010070 193 LSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVE 272 (519)
Q Consensus 193 ~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~ 272 (519)
.++++....-|.-||-..+++..++|.++|....+ +. .+++ .| +..+|..+...+..++
T Consensus 4 ~~v~I~n~~GLHARPAa~lv~~a~~~~s~v~l~~~---------------~~--~~~a-kS---il~lm~Lg~~~G~~v~ 62 (85)
T PRK10850 4 QEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSN---------------GK--SASA-KS---LFKLQTLGLTQGTVVT 62 (85)
T ss_pred EEEEECCCCcccHHHHHHHHHHHHhCCCEEEEEEC---------------Ce--EEch-Hh---HHHHHhcCCCCCCEEE
Confidence 45667766669999999999999999888764211 11 2232 22 2467777766677788
Q ss_pred EEEcCCCCChhHHHHHHHHHHH
Q 010070 273 IEIIDKLISVPYVEMTLKLMER 294 (519)
Q Consensus 273 I~~~~~~~s~~~v~~t~~~L~~ 294 (519)
|...++ ....-++.+.++|+.
T Consensus 63 i~~~G~-De~~A~~~l~~ll~~ 83 (85)
T PRK10850 63 ISAEGE-DEQKAVEHLVKLMAE 83 (85)
T ss_pred EEEeCc-CHHHHHHHHHHHHHh
Confidence 876542 122334555555543
No 63
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=25.10 E-value=2.7e+02 Score=28.60 Aligned_cols=108 Identities=29% Similarity=0.264 Sum_probs=56.0
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccCC
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~D 327 (519)
+.|..+...+.|||++- ...|+ +..++....+.|++.+..+........+-+.|.. .+-.-..+
T Consensus 23 l~g~~~~~q~~AfL~al-r~kge----------t~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gtg-----gdg~~t~n 86 (330)
T TIGR01245 23 MSGEASPAQIAAILAAL-RIKGE----------TPEEITGFAKAMREHAVKVPGRPVEDLVDIVGTG-----GDGANTIN 86 (330)
T ss_pred HcCCCCHHHHHHHHHHH-HHcCC----------CHHHHHHHHHHHHHhCCCCCCccCCCcccccCCC-----CCCCCccc
Confidence 34556655567888764 44444 2356777888899888766532110112222211 11111223
Q ss_pred hhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEe
Q 010070 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 375 (519)
Q Consensus 328 ~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~ 375 (519)
+++++-+++ +..|-+|..+|-....-+ ..-.+.|+.+|++++..
T Consensus 87 ist~~a~vl--A~~G~~V~kHG~r~~~s~--~Gs~d~le~LGi~~~~s 130 (330)
T TIGR01245 87 ISTASAFVA--AAAGVKVAKHGNRSVSSK--SGSADVLEALGVNLDLG 130 (330)
T ss_pred cHHHHHHHH--HhCCCEEEEeCCCCCCCC--ccHHHHHHHcCCCCCCC
Confidence 333322222 234667777764332222 23478999999998654
No 64
>PRK07394 hypothetical protein; Provisional
Probab=23.97 E-value=4.1e+02 Score=27.48 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=57.7
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccCC
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~D 327 (519)
+.|..+..-+.+||++- ...|++ ..++.-.++.|++.-.++....+...+.+-|.. +- +.. --.+
T Consensus 35 l~g~~~~~q~aAfL~al-r~KGET----------~eEiaG~~~a~~~~~~~~~~~~~~~~~d~~Gtg-gD-G~~--~t~N 99 (342)
T PRK07394 35 LLGEATPAQIGAFLIAH-RIKRPT----------PEELAGMLDTYDELGPKLQSPSNQRPPIVFGMP-YD-GRS--RTAP 99 (342)
T ss_pred HcCCCCHHHHHHHHHHH-HhhCCC----------HHHHHHHHHHHHHhCCCCCCCCCCCceeEEeCC-CC-CCC--CCcc
Confidence 44556655567777753 455542 345777888888876655422110122232211 11 110 1124
Q ss_pred hhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEE
Q 010070 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374 (519)
Q Consensus 328 ~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~ 374 (519)
+++++-+++++ .|-+|..+|-...+-+....-.|+|+.+|++++.
T Consensus 100 iSt~aA~v~A~--~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~ 144 (342)
T PRK07394 100 IYPLTALILAA--AGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTG 144 (342)
T ss_pred cHHHHHHHHHH--CCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCC
Confidence 55543333333 3667777775433333222267999999999876
No 65
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=23.56 E-value=2.5e+02 Score=31.00 Aligned_cols=108 Identities=20% Similarity=0.147 Sum_probs=59.2
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccCC
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~D 327 (519)
+.|..+..-+.|||+|- ...|+ +..++.-..+.|++.+.++...+. ..+-+.|.+ +. +. --.+
T Consensus 226 l~g~~~~~qi~AfL~al-r~kge----------t~eEl~g~~~a~~~~~~~~~~~~~-~~iD~~gtG-gd-g~---~t~n 288 (531)
T PRK09522 226 VRGELKPEQLAAALVSM-KIRGE----------HPNEIAGAATALLENAAPFPRPDY-LFADIVGTG-GD-GS---NSIN 288 (531)
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCCCCCCCC-CcccccCCC-CC-CC---CCcc
Confidence 55677766667888764 44554 245677788889988776543211 123233321 11 11 1123
Q ss_pred hhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeC
Q 010070 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 376 (519)
Q Consensus 328 ~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~ 376 (519)
+++++-+++++ .|-+|..+|-...+-+ ..-.|+|+.+|++++...
T Consensus 289 ist~aa~v~A~--~Gv~V~kHG~r~~ss~--~GsadvlealGi~~~~~~ 333 (531)
T PRK09522 289 ISTASAFVAAA--CGLKVAKHGNRSVSSK--SGSSDLLAAFGINLDMNA 333 (531)
T ss_pred cHHHHHHHHHh--CCCcEEEeCCCCCCCC--ccHHHHHHHcCCCCCCCH
Confidence 55443333332 3667777764322222 356899999999986553
No 66
>PHA02780 hypothetical protein; Provisional
Probab=22.78 E-value=62 Score=24.30 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.1
Q ss_pred CCCChhHHHHHHHHHHcCCEEEEcCC
Q 010070 120 LLSSEDIHHMLDALKKLGLNVEEDFA 145 (519)
Q Consensus 120 ~~~~~dv~~~l~aL~~lGa~v~~~~~ 145 (519)
..+.+++..++++|..||+.|..+++
T Consensus 31 eided~i~ellniltelgcdvdfde~ 56 (73)
T PHA02780 31 EIDEDEIMELLNILTELGCDVDFDEN 56 (73)
T ss_pred eechHHHHHHHHHHHHhCCCcccccc
Confidence 34678999999999999999987664
No 67
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=22.68 E-value=2.9e+02 Score=28.43 Aligned_cols=106 Identities=26% Similarity=0.288 Sum_probs=54.4
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccCC
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~D 327 (519)
+.|..|..-+.|||+|- ...|+ +..++.-.++.|++....+...+. .+-+.|.. +. +. -..+
T Consensus 29 l~g~~~~~q~~AfL~al-r~kge----------t~~El~g~~~a~~~~~~~~~~~~~--~iDi~gtg-gd-g~---~t~n 90 (339)
T PRK00188 29 MSGEATPAQIAAFLTAL-RVKGE----------TVDEIAGAARAMREHAVPVPDPDD--AVDIVGTG-GD-GA---NTFN 90 (339)
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCcCCCCCC--CCcccCCC-CC-CC---Cccc
Confidence 45566665567888764 44444 235677788888887765532211 22122210 00 00 1112
Q ss_pred hhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEe
Q 010070 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 375 (519)
Q Consensus 328 ~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~ 375 (519)
+++++-++ ++..|-+|..+|-....-+ ..-.++|+.+|+++...
T Consensus 91 is~~~a~v--lA~~G~~V~kHG~~~~~s~--~GsadvLe~lGi~~~~~ 134 (339)
T PRK00188 91 ISTAAAFV--AAAAGVKVAKHGNRSVSSK--SGSADVLEALGVNLDLS 134 (339)
T ss_pred hHHHHHHH--HHhCCCEEEEECCCCCCCC--cCHHHHHHHcCCCCCCC
Confidence 33322122 2233667777774332222 34568999999998644
No 68
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=1.3e+02 Score=28.75 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=29.9
Q ss_pred CeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeC
Q 010070 192 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCIL 226 (519)
Q Consensus 192 ~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~ 226 (519)
...++++|+..+..+.+.++++.|+..|.++..+.
T Consensus 72 ~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lET 106 (212)
T COG0602 72 ARGVSLTGGEPLLQPNLLELLELLKRLGFRIALET 106 (212)
T ss_pred cceEEEeCCcCCCcccHHHHHHHHHhCCceEEecC
Confidence 34688999999877789999999999999988743
No 69
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=22.08 E-value=2.1e+02 Score=29.63 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=53.2
Q ss_pred ChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCC
Q 010070 123 SEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPR 202 (519)
Q Consensus 123 ~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~ 202 (519)
..++.-+++++++..-++..... ..+.+.|.||. . ..++++. .+.|+++++ ...++...|..+
T Consensus 53 ~eEi~G~~~am~~~~~~~~~p~~-~~vDi~GTGGD--g------~~T~NiS-------t~aA~v~A~-~Gv~VaKHGnrs 115 (338)
T COG0547 53 PEEIAGFAEAMREHAPKLPVPAA-DPVDIVGTGGD--G------ANTINIS-------TAAAIVAAA-AGVPVAKHGNRS 115 (338)
T ss_pred HHHHHHHHHHHHHhcccCCCCCC-CCCCeecCCCC--C------CCcccch-------HHHHHHHHh-CCCcEEeECCCC
Confidence 46788889999987666554332 12556666532 1 1245554 555555553 347888888777
Q ss_pred CCCCChHHHHHHHHhCCCEEEE
Q 010070 203 MRERPIGDLVTGLKQLGADVDC 224 (519)
Q Consensus 203 l~~Rp~~~l~~~L~~lGa~v~~ 224 (519)
..++.=. -|+|+.||+++..
T Consensus 116 ~sSksGs--aDvleaLGv~l~~ 135 (338)
T COG0547 116 VSSKSGS--ADVLEALGVNLEL 135 (338)
T ss_pred CCCCCcH--HHHHHHcCCCCCC
Confidence 6665444 8999999999875
No 70
>PRK07394 hypothetical protein; Provisional
Probab=22.07 E-value=2.6e+02 Score=28.89 Aligned_cols=87 Identities=28% Similarity=0.256 Sum_probs=50.1
Q ss_pred ChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCC
Q 010070 123 SEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPR 202 (519)
Q Consensus 123 ~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~ 202 (519)
.+.+.-+++++++.-.++....+...+.+-|.|+. .. ...+++. .+.++++++ ...++...|...
T Consensus 58 ~eEiaG~~~a~~~~~~~~~~~~~~~~~d~~GtggD--G~-----~~t~NiS-------t~aA~v~A~-~Gv~V~kHGnr~ 122 (342)
T PRK07394 58 PEELAGMLDTYDELGPKLQSPSNQRPPIVFGMPYD--GR-----SRTAPIY-------PLTALILAA-AGQPVVLHGGDR 122 (342)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCceeEEeCCCC--CC-----CCCcccH-------HHHHHHHHH-CCCeEEEECCCC
Confidence 46788889999987765542211123444454421 10 1234332 445554443 356888888766
Q ss_pred CCCCChHHHHHHHHhCCCEEEE
Q 010070 203 MRERPIGDLVTGLKQLGADVDC 224 (519)
Q Consensus 203 l~~Rp~~~l~~~L~~lGa~v~~ 224 (519)
..++-=...-|+|++||+++..
T Consensus 123 ~ssk~GvtsaDvLe~LGv~~~~ 144 (342)
T PRK07394 123 MPTKYGVPLVELWQGLGVDLTG 144 (342)
T ss_pred CCCCCCchHHHHHHHCCCCCCC
Confidence 5544322358999999998864
No 71
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=21.59 E-value=3.4e+02 Score=26.57 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=40.7
Q ss_pred HHHHHHHcCCeEEEe-------------CCeEEEcCCCC-------ccccEEecCccHHHHHHHHHHHcCC-C----CEE
Q 010070 441 ICTELRKLGATVEEG-------------PDYCVITPPEK-------LKVAAIDTYDDHRMAMAFSLAACAD-V----PVT 495 (519)
Q Consensus 441 ~~~~L~klGa~i~~~-------------~d~l~I~g~~~-------l~~~~i~~~~Dhr~ama~~laa~~~-~----~v~ 495 (519)
.++||.++|+++-+- +|.++..|.-. .-+.++....|+-...++.=++-.. . +++
T Consensus 75 AvEEL~~lGa~tfiRVGT~Galq~~i~~Gdvvi~tgAvr~dG~s~~y~~~~~PAv~d~~~t~al~~aa~~~~~~~~vG~v 154 (248)
T COG2820 75 AVEELARLGAKTFIRVGTTGALQPDINVGDVVVATGAVRLDGASKHYAPEEFPAVADFELTNALVEAAESLGVTVHVGVV 154 (248)
T ss_pred HHHHHHhcCCeEEEEeeccccccCCCCCCCEEEeccccccccccccccCCCCCCCCCHHHHHHHHHHHHhcCCceEEEEE
Confidence 456677777765431 34444444311 2234677788988866654333222 1 222
Q ss_pred EeCCcc----------cccccccHHHHHHhccc
Q 010070 496 IKDPSC----------TRKTFPDYFDVLDSVTK 518 (519)
Q Consensus 496 I~n~~~----------v~ks~p~F~~~L~~lg~ 518 (519)
...=.- +...++++|+.|+.+|.
T Consensus 155 ~S~D~FYgQ~r~~~~~~~~e~~~~~~~W~~~gv 187 (248)
T COG2820 155 ASSDAFYGQERYYSGFVTPEFKESWEEWQDLGV 187 (248)
T ss_pred eecccccccccccccccCcchHHHHHHHHHcCc
Confidence 221111 13455788888888764
No 72
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=21.47 E-value=2e+02 Score=29.19 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=75.6
Q ss_pred cceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEec-CCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCC
Q 010070 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDN-LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG 155 (519)
Q Consensus 77 ~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n-~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~ 155 (519)
|+++.+.| ...|.|.+--+-..-.+. ++.++....+.++= +++..--+.+++-+|+.|++|.--.+.. |.+.
T Consensus 119 M~KiavGp--~~~g~idld~~~~~Nl~~-vA~algk~v~dltV~vLdRpRH~~lI~eiR~~Gari~Li~DGD---V~~a- 191 (309)
T cd01516 119 MEKIAVGP--GAKGVIDLDAPVAENLRA-VAKALGKPVEDLTVVVLDRPRHAALIEEIREAGARIKLIPDGD---VAAA- 191 (309)
T ss_pred eeeeeECc--ccCCeecCCCCHHHHHHH-HHHHcCCChhHeEEEEEcCchHHHHHHHHHHcCCeEEEecccc---HHHH-
Confidence 78888988 458999886554344443 34456555555554 5666667789999999999997533210 1110
Q ss_pred CCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCC
Q 010070 156 GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGA 220 (519)
Q Consensus 156 g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa 220 (519)
+... .+.....++.|-.|+..-.|.|+.+- .-.+.+. | +|--|. .+-.+-.+++|.
T Consensus 192 --i~~~-~~~s~vD~~~GiGGaPEGVlaAaAlk-clGG~~q--g--rL~~~~-~~e~~r~~~~Gi 247 (309)
T cd01516 192 --IATA-LPGSGVDVLMGIGGAPEGVLAAAALK-CLGGEMQ--G--RLLPRN-EEERARAREMGI 247 (309)
T ss_pred --HHHh-CCCCCeeEEEECCCChHHHHHHHHHH-hCCceeE--E--EECCCC-HHHHHHHHHcCC
Confidence 0000 01114578889888888777766543 2233432 2 233333 344777888898
No 73
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=21.30 E-value=1.3e+02 Score=26.09 Aligned_cols=94 Identities=17% Similarity=0.294 Sum_probs=49.5
Q ss_pred EEEEccCCCCCc-chhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcceeEEeCCC-CCcHHHHHHHHHHcCCC--
Q 010070 345 VTVEGCGTSSLQ-GDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNK-MPDVAMTLAVVALFADG-- 420 (519)
Q Consensus 345 v~i~g~~~~~~~-~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~v~~~~-~pd~~~~Lavaa~~a~G-- 420 (519)
+.|.|.....++ .+..+...|+++|.++. +..++|+ +.|.++...+ .-|+++++++++++.+-
T Consensus 12 ~~ivGl~~~av~esr~Rv~~al~~~g~~~p--~~~i~VN-----------lap~~l~k~g~~~DLaIA~ailsa~~~~~~ 78 (121)
T PF13541_consen 12 FNIVGLPDTAVKESRERVRSALKNSGFPFP--NQDITVN-----------LAPADLKKEGPAFDLAIAIAILSAFGQIPI 78 (121)
T ss_pred eEEecCchHHHHHHHHHHHHHHHhcCCCCC--cceeeeE-----------EEeCCEEEeeeeehHHHHHHHHHhCCCccc
Confidence 445555555454 33677888999888765 4556664 2222222211 22899999988765431
Q ss_pred --CEEEeccccc--ccccchhHHHHHHHHHHcCCe
Q 010070 421 --PTAIRDVASW--RVKETERMIAICTELRKLGAT 451 (519)
Q Consensus 421 --~s~I~~~~~~--r~kEsdR~~~~~~~L~klGa~ 451 (519)
.+.+-+--.+ .+....++...+.+.+++|.+
T Consensus 79 ~~~~~~~GEl~L~G~ir~v~~~~~~~~~A~~~G~~ 113 (121)
T PF13541_consen 79 PEDTVFIGELGLDGEIRPVPGILPRIIEAKKLGFK 113 (121)
T ss_pred CCCEEEEEEecCCccEEecCcHHHHHHHHHHCCCC
Confidence 2222210000 011122355666777777764
No 74
>TIGR01157 pufL photosynthetic reaction center L subunit. This model describes the photosynthetic reaction center L subunit in non-oxygenic photosynthetic bacteria. Reaction center is an integral membrane pigment-protein that carries out light-driven electron transfer reactions. At the core of reaction center is a collection light-harvesting cofactors and closely associated polypeptides. The core protein complex is made of L, M and H subunits. The common cofactors include bacterichlorophyll, bacteriopheophytins, ubiquinone and no-heme ferrous iron. The net result of electron tranfer reactions is the establishment of proton electrochemical gradient and production of reducing equivalents in form of NADH. Ultimately the process results in the reduction of C02 to carbohydrates(C6H12O6) In non-oxygenic organisms, the electron donor is some organic acid and not water. Much of our current functional understanding of photosynthesis comes from the structural determination, spectroscopic studies
Probab=20.59 E-value=1.2e+02 Score=29.29 Aligned_cols=44 Identities=20% Similarity=0.435 Sum_probs=33.2
Q ss_pred EecCccHHHHHHHHHHHc--CCCCEEEeCCcccccccccHHHHHHhc
Q 010070 472 IDTYDDHRMAMAFSLAAC--ADVPVTIKDPSCTRKTFPDYFDVLDSV 516 (519)
Q Consensus 472 i~~~~Dhr~ama~~laa~--~~~~v~I~n~~~v~ks~p~F~~~L~~l 516 (519)
+...+=||.+.-|++.+. +...+.+.++ .+.++||++|+-..+|
T Consensus 191 ~~~~gIHR~g~~~A~~~~~~~ai~i~lsG~-~~~~~w~~ww~~w~~~ 236 (239)
T TIGR01157 191 VGTLGIHRVGLFLALSAVFWSAICMIISGP-IYFDSWPDWWEWWVKL 236 (239)
T ss_pred chHHHHHHHHHHHHHHHHHHhheEEEEecC-ccCCCccHHHHHHHhC
Confidence 344566999998888773 4556788888 4578999999887665
Done!