Query 010070
Match_columns 519
No_of_seqs 238 out of 1897
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 19:14:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nvs_A 3-phosphoshikimate 1-ca 100.0 1.5E-80 5E-85 659.1 50.5 429 74-518 22-450 (450)
2 3rmt_A 3-phosphoshikimate 1-ca 100.0 1.3E-79 4.4E-84 649.0 40.5 414 77-519 4-433 (455)
3 2o0b_A 3-phosphoshikimate 1-ca 100.0 1.4E-77 4.9E-82 635.3 49.6 409 85-519 10-426 (450)
4 3slh_A 3-phosphoshikimate 1-ca 100.0 3.3E-77 1.1E-81 631.0 43.3 412 79-519 5-431 (441)
5 1rf6_A 5-enolpyruvylshikimate- 100.0 2.6E-72 8.8E-77 593.2 45.9 411 79-518 2-426 (427)
6 2pqc_A 3-phosphoshikimate 1-ca 100.0 2.4E-68 8.1E-73 566.3 46.4 414 79-519 4-441 (445)
7 4fqd_A NIKO protein; beta/alph 100.0 1.4E-66 4.7E-71 554.8 32.0 412 77-519 13-451 (479)
8 1ejd_A MURA, EPT, UDP-N-acetyl 100.0 7.1E-65 2.4E-69 535.6 43.0 405 77-519 1-412 (419)
9 3r38_A UDP-N-acetylglucosamine 100.0 1.8E-64 6.1E-69 536.0 44.4 402 75-519 23-436 (454)
10 2yvw_A UDP-N-acetylglucosamine 100.0 1.7E-64 5.7E-69 533.2 39.8 403 76-519 9-418 (425)
11 3slh_A 3-phosphoshikimate 1-ca 100.0 1.4E-33 4.7E-38 297.9 26.3 324 91-454 91-434 (441)
12 3nvs_A 3-phosphoshikimate 1-ca 100.0 4.9E-33 1.7E-37 294.8 23.4 320 96-449 117-449 (450)
13 3rmt_A 3-phosphoshikimate 1-ca 100.0 1.3E-32 4.6E-37 290.2 19.7 327 91-456 90-438 (455)
14 3r38_A UDP-N-acetylglucosamine 100.0 8E-32 2.7E-36 285.5 25.0 332 79-456 95-441 (454)
15 2o0b_A 3-phosphoshikimate 1-ca 100.0 5.1E-31 1.8E-35 278.9 26.8 322 172-519 20-358 (450)
16 1rf6_A 5-enolpyruvylshikimate- 100.0 7.1E-30 2.4E-34 269.1 27.9 315 97-450 90-426 (427)
17 4fqd_A NIKO protein; beta/alph 100.0 2.1E-30 7.2E-35 276.1 19.8 331 100-473 107-471 (479)
18 1ejd_A MURA, EPT, UDP-N-acetyl 100.0 4.7E-29 1.6E-33 262.4 25.9 329 79-455 69-416 (419)
19 2yvw_A UDP-N-acetylglucosamine 100.0 2.4E-29 8.3E-34 264.9 22.5 297 113-456 116-423 (425)
20 2pqc_A 3-phosphoshikimate 1-ca 100.0 8.6E-28 2.9E-32 254.8 28.8 266 231-519 3-282 (445)
21 3tut_A RNA 3'-terminal phospha 93.4 2.6 8.9E-05 42.3 16.4 121 97-224 35-172 (358)
22 3pqv_A RCL1 protein; RTC-like, 91.5 2.4 8.3E-05 42.7 13.6 125 92-224 9-151 (365)
23 3tut_A RNA 3'-terminal phospha 90.3 8 0.00027 38.7 15.9 123 175-301 35-172 (358)
24 3pqv_A RCL1 protein; RTC-like, 58.3 59 0.002 32.5 10.7 122 175-300 13-150 (365)
25 4hkm_A Anthranilate phosphorib 53.2 14 0.00048 36.8 5.2 109 248-376 32-140 (346)
26 2elc_A Trp D, anthranilate pho 37.4 66 0.0022 31.6 7.1 107 248-375 26-132 (329)
27 1khd_A Anthranilate phosphorib 35.8 58 0.002 32.3 6.4 107 248-375 39-146 (345)
28 3r88_A Anthranilate phosphorib 34.8 45 0.0015 33.5 5.5 109 248-376 52-161 (377)
29 1vqu_A Anthranilate phosphorib 32.7 91 0.0031 31.2 7.4 107 248-375 53-169 (374)
30 1kkl_H Phosphocarrier protein 31.8 1.9E+02 0.0066 22.9 8.6 81 192-294 15-95 (100)
31 4hkm_A Anthranilate phosphorib 28.2 56 0.0019 32.4 4.8 84 123-224 55-138 (346)
32 2elc_A Trp D, anthranilate pho 24.5 86 0.0029 30.8 5.4 84 122-224 48-131 (329)
33 1y51_A Phosphocarrier protein 23.9 2.4E+02 0.0084 21.5 8.3 80 193-294 4-83 (88)
No 1
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=100.00 E-value=1.5e-80 Score=659.14 Aligned_cols=429 Identities=57% Similarity=0.918 Sum_probs=390.2
Q ss_pred ccCcceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEc
Q 010070 74 QSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEG 153 (519)
Q Consensus 74 ~~~~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g 153 (519)
.+.|+.+.|+|.++++|+|++|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|+++++..+++|+|
T Consensus 22 ~~~m~~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~~~D~~~~~~~L~~lG~~i~~~~~~~~~~i~g 101 (450)
T 3nvs_A 22 SNAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEG 101 (450)
T ss_dssp ---CCEEEECCCCCBCEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSSCEEEEC
T ss_pred cCccceEEEcCCCcceEEEEeCCcHHHHHHHHHHHHHcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEEcCCccEEEEeC
Confidence 34488899999999999999999999999999999999999999999999999999999999999999875422699999
Q ss_pred CCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcE
Q 010070 154 CGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPV 233 (519)
Q Consensus 154 ~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi 233 (519)
.++.+..+ ....+++||||+++|||+++++. +++++.++|+|+|++||+++++++|++||++|+..++++++|+
T Consensus 102 ~~~~~~~~----~~~~l~~g~sgt~~R~l~~~la~--~~~~~~l~G~~~l~~RPi~~~l~~L~~lGa~i~~~~~~g~~p~ 175 (450)
T 3nvs_A 102 LGQAFHTT----QPLELFLGNAGTAMRPLAAALCL--GQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPL 175 (450)
T ss_dssp CSSCCBCS----SCEEEECTTCHHHHHHHHHHTTS--SBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSSTTSSCE
T ss_pred CCCCcCCC----CCceEEccCccchHHHHHHHHhc--CCcEEEEeCCcccccCCHHHHHHHHHHCCCEEEEEcCCCeEeE
Confidence 86444332 12368899999999999998664 4689999999999999999999999999999998555578899
Q ss_pred EEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecC
Q 010070 234 RINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGG 313 (519)
Q Consensus 234 ~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~ 313 (519)
+|+|+ ++.++++++++++||||++++||||++++|+++|++.++..++||+++|+++|++||++|+..+. +.|+|+|.
T Consensus 176 ~I~g~-~l~gg~i~i~g~~sSq~~s~lLlAa~la~g~t~I~~~~~~~s~p~i~~t~~~L~~~Ga~i~~~g~-~~i~I~g~ 253 (450)
T 3nvs_A 176 RIQGT-GLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDY-QEFVIPAG 253 (450)
T ss_dssp EEECC-CCCSEEEEECCSSCTHHHHHHHHHGGGSSSCEEEEESSCCSSHHHHHHHHHHHHHTTCCCEEETT-TEEEECTT
T ss_pred EEEcC-CcCceEEEeCCCCcHHHHHHHHHHHHHCCCcEEEEeCCCcCCchHHHHHHHHHHHCCCCEEecCC-cEEEEcCC
Confidence 99997 68999999999999999999999999999999999876667889999999999999999998763 47999998
Q ss_pred CcccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCC
Q 010070 314 QKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKH 393 (519)
Q Consensus 314 ~~l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~ 393 (519)
++|..+.++.+++|+++++||++++++++|+++|+|++..++|+|..+++.|++||++|+++++.+++.+. .
T Consensus 254 ~~l~~~~~~~v~~D~s~As~~l~aaal~~g~v~i~~~~~~~~~~D~~i~~~L~~mGa~i~~~~~~i~v~~~--------~ 325 (450)
T 3nvs_A 254 QSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVIARRG--------E 325 (450)
T ss_dssp CCCBCCSEEECCBCHHHHHHHHHHHHHHCSEEEEESCCTTCSCGGGGHHHHHHHHTCEEEECSSEEEEECC--------C
T ss_pred ccccCCcceEecCCHHHHHHHHHHHHhcCCeEEEccCCcccccchHHHHHHHHHcCCeEEEeCCEEEEecC--------C
Confidence 77874458999999999999999999999999999999999999989999999999999999999998863 4
Q ss_pred cceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccEEe
Q 010070 394 LRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAID 473 (519)
Q Consensus 394 l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~i~ 473 (519)
|+|++++...+||++|+++++|++|+|+++|+|++++|+|||||+.+++++|++||++|++.+|.++|+|+++|+|++++
T Consensus 326 L~g~~i~~~~~PD~~~~l~~~aa~A~G~t~I~~~~~lR~ke~dRi~~l~~eL~kmGa~I~~~~d~i~I~G~~~L~g~~v~ 405 (450)
T 3nvs_A 326 LNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAID 405 (450)
T ss_dssp CBCCEEECTTCTTTHHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSEEEEECCSSCCCCEEC
T ss_pred cCcEEeecCCCcCHHHHHHHHHHHCCCCEEEechhhccCCCchHHHHHHHHHHHcCCEEEEcCCEEEEeCCCCCCCCEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred cCccHHHHHHHHHHHcCCCCEEEeCCcccccccccHHHHHHhccc
Q 010070 474 TYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 518 (519)
Q Consensus 474 ~~~Dhr~ama~~laa~~~~~v~I~n~~~v~ks~p~F~~~L~~lg~ 518 (519)
+++|||+||+|++||++.++++|+|++|++|+||+||++|++||.
T Consensus 406 ~~~DhR~ama~aiaal~a~~~~I~~~~~v~ksyp~f~~~l~~lg~ 450 (450)
T 3nvs_A 406 TYDDHRMAMCFSLVALSDTPVTINDPKCTSKTFPDYFDKFAQLSR 450 (450)
T ss_dssp CTTCHHHHHHHHGGGGSSSCEEEESGGGGGGTCTTHHHHHHHHBC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEECcCeeeCcchhHHHHHHHhcC
Confidence 999999999999999865789999999999999999999999983
No 2
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=100.00 E-value=1.3e-79 Score=649.04 Aligned_cols=414 Identities=30% Similarity=0.476 Sum_probs=366.8
Q ss_pred cceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCC-
Q 010070 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG- 155 (519)
Q Consensus 77 ~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~- 155 (519)
|+.++|+|.++++|+|++|||||++||+|++|+|++|+++|+|++.++|+..|+++|++||++|++++ ..++|+|.+
T Consensus 4 ~~~~~i~~~~~l~G~v~vpgsKs~s~Rali~AaLa~g~s~i~n~~~~~Dv~~~~~~L~~lG~~i~~~~--~~~~i~g~~~ 81 (455)
T 3rmt_A 4 ENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQKLGVSIEQAE--ERVTVKGKGW 81 (455)
T ss_dssp CCEEEECCCSCEEEEECCCBCHHHHHHHHHHHHHSBSCEEEESCCCSHHHHHHHHHHHTTTCEEEEET--TEEEEECCCG
T ss_pred CceEEEcCCCcceEEEEecCcHHHHHHHHHHHHhcCCCEEEccCCccHHHHHHHHHHHHcCCeEEecC--CEEEEeCCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999865 479999876
Q ss_pred CCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEE
Q 010070 156 GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (519)
Q Consensus 156 g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I 235 (519)
+.+..+ ...+++|||||++|||+++++. ..+++.++|+|+|++||+++|+++|++|||+|+..++.+++|++|
T Consensus 82 ~~~~~~-----~~~i~~g~SGt~mRll~g~la~--~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~~~~~~Pl~i 154 (455)
T 3rmt_A 82 DGLREP-----SDILDVGNSGTTTRLILGILST--LPFHSVIIGDESIGKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSI 154 (455)
T ss_dssp GGCCCC-----SSCEECTTCHHHHHHHHHHHTT--SSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEHHHHTEEEEEE
T ss_pred CCcCCC-----cceeecccccccHHHHHHHHHc--CCcEEEEeCCcccccCCHHHHHHHHHHCCCEEEEecCCCcccEEE
Confidence 234443 3468999999999999998765 357899999999999999999999999999999765435789999
Q ss_pred EcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCc
Q 010070 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (519)
Q Consensus 236 ~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~ 315 (519)
+|+ ++++++|+++ ..|+||++++||||++++|.++|. ++..+.+| |+++|++||++|+..++ .|+|+|+++
T Consensus 155 ~g~-~l~g~~i~l~-~~Ssq~~s~lLlAa~~a~G~t~i~--ep~~s~~~---t~~~L~~~Ga~i~~~g~--~i~I~g~~~ 225 (455)
T 3rmt_A 155 RGG-QLKGIDFHSP-VASAQMKSAILLAGLRAEGKTSVT--EPAKTRDH---TERMLEAFGVNIEKDGL--TVSIEGGQM 225 (455)
T ss_dssp ECC-SCBCCEEECS-SCCHHHHHHHHHHHHTSBSCEEEE--CSSCCCCH---HHHHHHHTTCCEEEETT--EEEECSCCC
T ss_pred EeC-CccceEEEEc-cCcHHHHHHHHHHHHhcCCCEEEE--CCcCcHHH---HHHHHHHCCCCEEecCC--EEEEcCCcc
Confidence 985 7999999998 679999999999999999998875 33445544 89999999999998764 899999988
Q ss_pred ccCCccccccCChhhHHHHHHHHHh-cCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCe---------EEEeCCC
Q 010070 316 YKSPGNAFVEGDASSASYFVAGAAV-TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS---------VTVTGPP 385 (519)
Q Consensus 316 l~~~~~~~i~~D~~~a~~~la~aa~-~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~---------i~i~g~~ 385 (519)
|+ +.++.||+|+++|+||++++++ ++|+++++|+..+..+ ..+++.|++||+++++.++. ++|.+.
T Consensus 226 l~-~~~~~V~~D~s~Aa~~l~aaai~~gg~v~i~~~~~~~~~--~~il~~L~~mGa~i~~~~~~~~~ge~~~~i~v~~~- 301 (455)
T 3rmt_A 226 LT-GQHVVVPGDISSAAFFLVAGAMVPHSRITLTNVGINPTR--AGILEVLKQMGATLAMENERVQGGEPVADLTIETS- 301 (455)
T ss_dssp CB-CCEEECCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTT--THHHHHHHHTTCEEEEEEEEEETTEEEEEEEEECC-
T ss_pred cc-CCeeECCCCHHHHHHHHHHHHhcCCCEEEECCCCCchhH--HHHHHHHHHcCCEEEEcCCcccCCccceEEEEecC-
Confidence 87 7889999999999999999998 7899999999755555 46999999999999987654 777643
Q ss_pred CCCCCCCCcceeEEeCCCCC---cHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEc
Q 010070 386 RDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVIT 462 (519)
Q Consensus 386 ~~~~~~~~l~g~~v~~~~~p---d~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~ 462 (519)
.|+|+++++.++| |++|.|++++++|+|+++|+|+.++|+|||||+.+++++|+|||++|++++|.++|+
T Consensus 302 -------~l~~~~i~~~~~P~~~D~~p~lavla~~a~G~s~I~~~~~LrvkEsdRi~a~~~eL~kmGa~i~~~~d~l~I~ 374 (455)
T 3rmt_A 302 -------VLQGVEIGGDIIPRLIDEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGASIHATDDGMIIE 374 (455)
T ss_dssp -------CCBCCCEETTHHHHHGGGHHHHHHHHHTSBSCEEEEC-----CHHHHHHHHHHHHHHHTTCCEEEETTEEEEC
T ss_pred -------CceeEEEeCccCCchHHHHHHHHHHHHhCCCcEEEEccccccccchhHHHHHHHHHHHCCCEEEEECCEEEEE
Confidence 4899999999888 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccE-EecCccHHHHHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 463 PPEKLKVAA-IDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 463 g~~~l~~~~-i~~~~Dhr~ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
|+++++|++ |++|+|||+||||++||+ +.++++|+|++|++|+||+||++|++||++
T Consensus 375 G~~~l~g~~~v~s~~DhR~amal~iagL~a~g~~~I~~~~~v~ksyp~f~~~l~~Lg~~ 433 (455)
T 3rmt_A 375 GPTPLKGGVTVSSHGDHRIGMAMAIAALLAEKPVTVEGTEAIAVSYPSFFDHLDRLKSE 433 (455)
T ss_dssp SCCCCBCSSEEECTTCHHHHHHHHHHHTTCBSCEEEECTHHHHHHCTTHHHHHHHHHHH
T ss_pred CCCCCCCCceecCCCCHHHHHHHHHHHHhCCCCEEEeCcceecCcchhHHHHHHHcccc
Confidence 988899998 999999999999999998 467899999999999999999999999874
No 3
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=100.00 E-value=1.4e-77 Score=635.28 Aligned_cols=409 Identities=32% Similarity=0.465 Sum_probs=371.6
Q ss_pred CCceeEEEEecCChhHHHHHHHHHHhcC----CceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccc
Q 010070 85 IREISGTVTLPGSKSLSNRILLLAALSE----GTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 160 (519)
Q Consensus 85 ~~~l~G~i~~pgsKs~s~R~l~~AaLa~----g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~ 160 (519)
.++++|+|++|||||+++|+|++|+|++ |+++|+|++.++|+..++++|++||++|++++ .+++|+|.++.+..
T Consensus 10 ~~~l~G~v~vpgsKs~s~R~l~~aaLa~~~~~g~~~i~~~l~~~D~~~~~~~L~~lGa~i~~~~--~~l~I~g~~~~l~~ 87 (450)
T 2o0b_A 10 PTPVRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQTLGLRVDGVG--SELTVSGRIEPGPG 87 (450)
T ss_dssp SSCCEEEECCCBCHHHHHHHHHHHHHHHHTTCCCEEEETCCCSHHHHHHHHHHHHTTCEEECSS--SCEEEESCCCCCTT
T ss_pred CCCeEEEEEccCcHHHHHHHHHHHHhcCCCCCCeEEEecCCCchHHHHHHHHHHHcCCEEEEeC--CEEEEECCCCCcCc
Confidence 4689999999999999999999999999 99999999999999999999999999998644 37999987533332
Q ss_pred cccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCC
Q 010070 161 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGG 240 (519)
Q Consensus 161 ~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~ 240 (519)
..+++|+||+++|||.++++. +++.+.++|+|+|++||++.++++|++||++|+. + ++|++|+|+++
T Consensus 88 -------~~i~~g~sgts~R~l~~lla~--~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~--~--~~p~~i~g~~~ 154 (450)
T 2o0b_A 88 -------ARVDCGLAGTVLRFVPPLAAL--GSVPVTFDGDQQARGRPIAPLLDALRELGVAVDG--T--GLPFRVRGNGS 154 (450)
T ss_dssp -------CEEECTTCHHHHHHHHHHHTT--SSSEEEEECCGGGGGSCCHHHHHHHHHTTCEEEC--S--SSSEEEECCSC
T ss_pred -------eeeeeccchhHHHHHHHHHhc--CCceEEEeCCCcCCCCCHHHHHHHHHHCCCEEEc--C--ceeEEEEecCC
Confidence 378899999999999998853 5778999999999999999999999999999973 2 56999998547
Q ss_pred CCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCC-CCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCC
Q 010070 241 LPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDK-LISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319 (519)
Q Consensus 241 l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~-~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~ 319 (519)
+++++|++++|+|+||++++||||+++.+.++|++.+. ..++||+++|+++|++||++|+..+. +.|+|+| ++|+ +
T Consensus 155 l~g~~i~i~~d~Ssq~~salllAA~~~~g~~~I~~~~~~~~s~p~i~~t~~~L~~~Ga~I~~~~~-~~i~I~g-~~l~-g 231 (450)
T 2o0b_A 155 LAGGTVAIDASASSQFVSGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTP-NRWQVRP-GPVA-A 231 (450)
T ss_dssp CCCEEEEECCTTCTHHHHHHHHHGGGSTTCEEEEECSSCCCCHHHHHHHHHHHHHTTCCEECCST-TEEEECC-CCCC-C
T ss_pred CcCcEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCcCCCcHHHHHHHHHHHCCCeEEecCC-cEEEEEC-CCCc-C
Confidence 99999999999999999999999999999999998654 56899999999999999999985542 3799997 5787 7
Q ss_pred ccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcceeEE
Q 010070 320 GNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 399 (519)
Q Consensus 320 ~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~v 399 (519)
.++.+|+|+++++||++++++++|+++|+|+..+++|+|..++++|++||++|++.++.++|.+. .+|+|+++
T Consensus 232 ~~~~v~~D~s~A~~~laaaa~~~g~v~i~~v~~~~~q~~~~i~~~L~~mGa~i~~~~d~i~v~~~-------~~l~g~~i 304 (450)
T 2o0b_A 232 RRWDIEPDLTNAVAFLSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIHADSSLEVRGP-------TGYDGFDV 304 (450)
T ss_dssp CCEECCBCHHHHHHHHHHHHHHTCEEEETTCCSSCSSCHHHHHHHHHHTTCEEEEETTEEEEECC-------SCCCCCEE
T ss_pred ceEEcCCCHHHHHHHHHHHHhcCCeEEECCCCcccccchHHHHHHHHHcCCeEEEcCCEEEEecC-------CCcceeEE
Confidence 78999999999999999999999999999999999998878999999999999999999999864 24889999
Q ss_pred eCCCCCcHHHHHHHHHHcCC--CCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccEEecCcc
Q 010070 400 NMNKMPDVAMTLAVVALFAD--GPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDD 477 (519)
Q Consensus 400 ~~~~~pd~~~~Lavaa~~a~--G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~i~~~~D 477 (519)
+++++||++|++++++++++ |+++|+|++++|+|||||+++++++|++||++|++.+|.++|+| .+++|++|++|+|
T Consensus 305 ~~~~~~D~~p~lavla~~a~~~G~s~I~~~~~lrvkEtdRi~~~~~eL~klGa~i~~~~d~~~I~g-~~l~g~~v~s~~D 383 (450)
T 2o0b_A 305 DLRAVGELTPSVAALAALASPGSVSRLSGIAHLRGHETDRLAALSTEINRLGGTCRETPDGLVITA-TPLRPGIWRAYAD 383 (450)
T ss_dssp ECTTCGGGHHHHHHHHHTSSTTCEEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEEETTEEEEEC-CCCCCEEECCTTC
T ss_pred eCCCCHHHHHHHHHHHHhCCCCCcEEEECCcccccccchhHHHHHHHHHHCCCeEEEECCEEEEEC-cCCcCCeEECCcH
Confidence 99999999999999999999 99999999999999999999999999999999999999999998 5799999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEeCCcccccccccHHHHHHhc-ccC
Q 010070 478 HRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSV-TKR 519 (519)
Q Consensus 478 hr~ama~~laa~~~~~v~I~n~~~v~ks~p~F~~~L~~l-g~~ 519 (519)
||+||||++||++.++++|+|++|++|+||+||++|++| |++
T Consensus 384 hR~ama~~iagl~~~~~~I~~~~~v~ksyp~f~~~l~~l~Ga~ 426 (450)
T 2o0b_A 384 HRMAMAGAIIGLRVAGVEVDDIAATTKTLPEFPRLWAEMVGPG 426 (450)
T ss_dssp HHHHHHHHHHHTTSTTEEESCGGGGGGTCTTHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCCEEEcccChhhCchHHHHHHHHhccCCC
Confidence 999999999999877899999999999999999999999 874
No 4
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=100.00 E-value=3.3e-77 Score=630.97 Aligned_cols=412 Identities=32% Similarity=0.519 Sum_probs=366.3
Q ss_pred eEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCC-CC
Q 010070 79 EIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG-GL 157 (519)
Q Consensus 79 ~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~-g~ 157 (519)
.++|+|.++++|+|++|||||++||+|++|+|++|+++|+|++.++|+..|+++|++||++|+++++...++|+|.+ +.
T Consensus 5 ~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~~~D~~~~~~~L~~lG~~i~~~~~~~~~~i~~~~~~~ 84 (441)
T 3slh_A 5 DYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVGMTG 84 (441)
T ss_dssp EEEECCCSCCEEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEEGGGTEEEEECCCTTC
T ss_pred eEEEeCCCcceEEEEcCCcHHHHHHHHHHHHHcCCCEEEcCCCCcHHHHHHHHHHHHcCCEEEEecCCCEEEEeccccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999986322489999886 33
Q ss_pred ccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEc
Q 010070 158 FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRING 237 (519)
Q Consensus 158 ~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g 237 (519)
+..+ ...+++|+||+++|||++++++. .++++++|+|+|++||+++|+++|++|||+|..+ ++++|++|+|
T Consensus 85 ~~~~-----~~~i~~g~sgtt~r~l~g~l~~~--~g~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~--~g~~p~~i~g 155 (441)
T 3slh_A 85 LQAP-----PEALDCGNSGTAIRLLSGLLAGQ--PFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDST--GNVPPLKIYG 155 (441)
T ss_dssp CCCC-----SSCEECTTCHHHHHHHHHHHTTS--SSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEE--TTEEEEEEEC
T ss_pred CCCC-----cceeeeccccccHHHHHHHHHhC--CCEEEEeCCcccccCCHHHHHHHHHHcCCEEEec--CCeEEEEEEc
Confidence 4443 34689999999999999988763 5678899999999999999999999999999432 4688999999
Q ss_pred CCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCccc
Q 010070 238 KGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK 317 (519)
Q Consensus 238 ~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~ 317 (519)
++++++++|+++. .|+||++++||||++++|+++|.. +.+|+++|+++|++||++|+..++ .|+|+|+++|+
T Consensus 156 ~~~l~g~~i~l~~-~Ssq~~s~lLlAa~~a~g~t~i~e-----~~~~~~~t~~~L~~~Ga~i~~~~~--~i~I~g~~~l~ 227 (441)
T 3slh_A 156 NPRLTGIHYQLPM-ASAQVKSCLLLAGLYARGKTCITE-----PAPSRDHTERLLKHFHYTLQKDKQ--SICVSGGGKLK 227 (441)
T ss_dssp CTTCBCCEEECSS-CCHHHHHHHHHHHTTSBSEEEEEC-----SSCCCCHHHHHHHHTTCCCEECSS--CEEEETTCCCB
T ss_pred CCCccceEEEecC-CCHHHHHHHHHHHHhcCCCeEeeC-----CcccHHHHHHHHHHCCCeEEEeCC--EEEEcCCCccc
Confidence 7459999999996 899999999999999999998862 234566799999999999998764 89999988887
Q ss_pred CCccccccCChhhHHHHHHHHHhc-CCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCe---------EEEeCCCCC
Q 010070 318 SPGNAFVEGDASSASYFVAGAAVT-GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS---------VTVTGPPRD 387 (519)
Q Consensus 318 ~~~~~~i~~D~~~a~~~la~aa~~-~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~---------i~i~g~~~~ 387 (519)
+.++.+|+|+++|+||+++++++ +++++++|+..++.+ ..+++.|++||++|+++++. +++.+.
T Consensus 228 -~~~~~V~~D~ssAa~~l~aaal~~g~~v~l~g~~~~~~~--~~~l~~L~~mGa~i~~~~~~~~~~e~~~~i~v~~~--- 301 (441)
T 3slh_A 228 -ANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTR--LGVINLLKMMGADIEVTHYTEKNEEPTADITVRHA--- 301 (441)
T ss_dssp -CCCEECCBCHHHHHHHHHHHHHSTTCEEEEEEEECCGGG--CHHHHHHHHHTCEEEEEEEEEETTEEEEEEEEECC---
T ss_pred -cceEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCccH--HHHHHHHHHcCCEEEEcCCccccCccceEEEEecC---
Confidence 67899999999999999999998 789999998654444 36899999999999987653 566642
Q ss_pred CCCCCCcceeEEeCCCCC---cHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCC
Q 010070 388 PYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPP 464 (519)
Q Consensus 388 ~~~~~~l~g~~v~~~~~p---d~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~ 464 (519)
.|+|++++..++| |++|.++++|++|+|+++|+|++++|+|||||+.+++++|++||++|++.+|.++|+|
T Consensus 302 -----~l~g~~i~~~~~p~~~D~~p~l~~~aa~A~G~t~I~~i~~lR~kEsdRi~~l~~eL~kmGa~i~~~~d~l~I~G- 375 (441)
T 3slh_A 302 -----RLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQG- 375 (441)
T ss_dssp -----CCBCCEECGGGHHHHGGGHHHHHHHHHTSBSEEEECSCGGGGGSSSCHHHHHHHHHHHTTCEEEEETTEEEEEC-
T ss_pred -----CCCceEEecccCCCcHHHHHHHHHHHHhCCCeEEEEeccccccccchHHHHHHHHHHHCCCEEEEeCCEEEEEC-
Confidence 4899999976555 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccEEecCccHHHHHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 465 EKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 465 ~~l~~~~i~~~~Dhr~ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
.+|+|+++++|+|||+||+|++||+ ++++++|+|++|++|+||+||++|++||++
T Consensus 376 ~~L~g~~v~s~~DhRiamalaia~l~a~g~~~I~~~~~v~ksyp~f~~~l~~lGa~ 431 (441)
T 3slh_A 376 GTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEVGMN 431 (441)
T ss_dssp CCCCCEEEECTTCHHHHHHHHHHHHHCSSCEEEECCGGGGGTCTTHHHHHHHHTCC
T ss_pred CCCCCCEEECCCCHHHHHHHHHHHHhCCCCEEEecccEecCchHHHHHHHHhCCCe
Confidence 5799999999999999999999997 678999999999999999999999999985
No 5
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=100.00 E-value=2.6e-72 Score=593.17 Aligned_cols=411 Identities=26% Similarity=0.445 Sum_probs=365.9
Q ss_pred eEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCC-CC
Q 010070 79 EIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG-GL 157 (519)
Q Consensus 79 ~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~-g~ 157 (519)
.+++.| ++++|+|++|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|++++ ..++|+|.+ ..
T Consensus 2 ~~~i~~-~~l~G~v~ipgsKs~t~r~Llaa~La~g~t~I~n~~~s~Dv~~~~~~L~~lG~~i~~~~--~~~~I~g~~~~~ 78 (427)
T 1rf6_A 2 KLKTNI-RHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKD--GVITVQGVGMAG 78 (427)
T ss_dssp EECCCC-CCEEEEECCCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEET--TEEEEECCCSSC
T ss_pred eeEEeC-CCceEEEEcCCcHHHHHHHHHHHHHcCCCEEEccCCCCHHHHHHHHHHHHcCCeEEecC--CEEEEECCCCCC
Confidence 366777 58999999999999999999999999999999999999999999999999999998654 378999874 23
Q ss_pred ccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEc
Q 010070 158 FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRING 237 (519)
Q Consensus 158 ~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g 237 (519)
+..+ ...+++++||+++|+++++++. .++++.++|+++++.||++.+++.|++||++|+..++++++|++|++
T Consensus 79 ~~~p-----~~~id~~~sgt~~rll~a~la~--~~~~v~l~G~~~l~~Rpi~~~l~~L~~mGa~i~~~~~~g~~pi~i~~ 151 (427)
T 1rf6_A 79 LKAP-----QNALNMGNSGTSIRLISGVLAG--ADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKG 151 (427)
T ss_dssp CCCC-----SSCEECTTCHHHHHHHHHHGGG--CSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEEEEEEEC
T ss_pred cCCC-----cceeeccccchHHHHHHHHHhc--CCcEEEEeCCCccCCCCHHHHHHHHHHCCCEEEEEcCCCcceEEEec
Confidence 4333 2468899999999999998743 35799999999999999999999999999999986434677999987
Q ss_pred CCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCccc
Q 010070 238 KGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK 317 (519)
Q Consensus 238 ~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~ 317 (519)
+.++++.++.++ +.|+|++++++|||++++|.++|... ..+++++. ++|++||++|+..++ .++|+|+++|+
T Consensus 152 ~~~L~g~~i~~~-~~ssq~~s~lllaA~~a~G~t~I~~~--~~~~~~i~---~~L~~~Ga~i~~~~~--~i~I~g~~~l~ 223 (427)
T 1rf6_A 152 TKNLRPIHYELP-IASAQVKSALMFAALQAKGESVIIEK--EYTRNHTE---DMLQQFGGHLSVDGK--KITVQGPQKLT 223 (427)
T ss_dssp CTTCCCCEEECS-SCCHHHHHHHHHHHTTSSEEEEEECS--SCCCCHHH---HHHHHTTCCCEEETT--EEEEEECCCCB
T ss_pred cCCCCceEEEeC-CCCHHHHHHHHHHHHhcCCCeEEEec--cCCHHHHH---HHHHHCCCCEEecCC--EEEEcCCcccC
Confidence 425999999998 89999999999999999999988743 45667765 899999999998774 89999988887
Q ss_pred CCccccccCChhhHHHHHHHHHhcCCe-EEEEccCCCCCcchhHHHHHHHHcCCEEEEe----C---CeEEEeCCCCCCC
Q 010070 318 SPGNAFVEGDASSASYFVAGAAVTGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT----E---NSVTVTGPPRDPY 389 (519)
Q Consensus 318 ~~~~~~i~~D~~~a~~~la~aa~~~g~-v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~----~---~~i~i~g~~~~~~ 389 (519)
+.++.+++|++.|+||++++++++|. ++++|+..+..+.| |++.|++||+++++. + +.++|.+.
T Consensus 224 -g~~~~v~~D~~~A~~~~~Aa~~~~g~~v~i~~~~~~~~~~~--~~~~L~~mGa~i~~~~~~~~~~~~~i~v~~~----- 295 (427)
T 1rf6_A 224 -GQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTG--IIDVIRAMGGKLEITEIDPVAKSATLIVESS----- 295 (427)
T ss_dssp -CCEEECCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCH--HHHHHHHTTCEEEEEEEETTTTEEEEEEECC-----
T ss_pred -CCeEEcCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCChhH--HHHHHHHcCCcEEEccccCCCCcceEEEeCC-----
Confidence 67899999999999999999999887 99999987677765 999999999999985 4 56777653
Q ss_pred CCCCcceeEEeCCCCC---cHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCC
Q 010070 390 GRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEK 466 (519)
Q Consensus 390 ~~~~l~g~~v~~~~~p---d~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~ 466 (519)
.|+++++++.++| |++|.+++++++++|+++|+|++++|+|||||+.+++++|+|||+++++++|.++|+|+.+
T Consensus 296 ---~l~~~~i~~~~~p~~~D~~p~l~~la~~a~G~s~i~~~~~lr~kEsdR~~~~~~eL~~lGa~i~~~~d~~~I~g~~~ 372 (427)
T 1rf6_A 296 ---DLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSA 372 (427)
T ss_dssp ---CCBCCEECTTSGGGTGGGHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEETTEEEEEECCC
T ss_pred ---CCCcEEeccccCCChHHHHHHHHHHHHhCCCcEEEEcccccccchhHHHHHHHHHHHHCCCEEEEECCEEEEeCCCC
Confidence 4899999999999 9999999999999999999999999999999999999999999999999999999999778
Q ss_pred ccccEEecCccHHHHHHHHHHH-c-CCCCEEEeCCcccccccccHHHHHHhccc
Q 010070 467 LKVAAIDTYDDHRMAMAFSLAA-C-ADVPVTIKDPSCTRKTFPDYFDVLDSVTK 518 (519)
Q Consensus 467 l~~~~i~~~~Dhr~ama~~laa-~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~ 518 (519)
++|++|++|+|||+||||++|| + +.++++|+|++|++|+||+||++|++||+
T Consensus 373 l~g~~v~s~~DhR~ama~~ia~~l~a~g~~~I~~~~~v~~syp~f~~~l~~lg~ 426 (427)
T 1rf6_A 373 LHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIH 426 (427)
T ss_dssp CCCEEEECTTCHHHHHHHHHHHHTCSSSCEEEETGGGGGGTCTTHHHHHHHHSC
T ss_pred CCCCeEECCccHHHHHHHHHHHHhcCCCcEEEcccCcccCcchhHHHHHHHhhC
Confidence 9999999999999999999999 8 46779999999999999999999999986
No 6
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=100.00 E-value=2.4e-68 Score=566.26 Aligned_cols=414 Identities=26% Similarity=0.393 Sum_probs=362.7
Q ss_pred eEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCC-CC
Q 010070 79 EIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG-GL 157 (519)
Q Consensus 79 ~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~-g~ 157 (519)
.++|+|.+++.|+|++|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++|+++++ .++|+|.+ ..
T Consensus 4 pl~i~~~~~l~G~v~ipgsKs~t~r~ll~A~La~g~t~i~n~~~~~dv~~~~~~L~~lG~~i~~~~~--~~~I~g~~~~~ 81 (445)
T 2pqc_A 4 PATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEGD--TWIIDGVGNGG 81 (445)
T ss_dssp CEEEECCSCCEEEEECCBCHHHHHHHHHHHHHSEEEEEEESCCCSHHHHHHHHHHHHTTCEEEEETT--EEEEEEECTTC
T ss_pred eEEEcCCCcceEEEEcCCCHHHHHHHHHHHHhcCCcEEEccCCCCHHHHHHHHHHHHCCCEEEecCC--EEEEEccCCCC
Confidence 4788887789999999999999999999999999999999999999999999999999999987653 78998875 22
Q ss_pred ccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEc
Q 010070 158 FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRING 237 (519)
Q Consensus 158 ~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g 237 (519)
+..+ ...++++++||++|||+++++. .++++.++|+++++.||++.+++.|++||++|++.+ ++++|++|++
T Consensus 82 ~~~p-----~~~~d~~~sgt~~r~l~~~l~~--~~~~v~l~G~~~l~~Rp~~~~l~~L~~~Ga~i~~~~-~g~~Pi~i~~ 153 (445)
T 2pqc_A 82 LLAP-----EAPLDFGNAATGCRLTMGLVGV--YDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSED-GDRLPVTLRG 153 (445)
T ss_dssp CCCC-----SSCEECTTCHHHHHHHHHHHHT--SSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEET-TTEEEEEEEC
T ss_pred CCCC-----CcccchhhhhHHHHHHHHHHhc--CCcEEEEECCccCCCCChHHHHHHHHHCCCEEEecc-CCcccEEEeC
Confidence 3333 2468899999999999998853 357899999999999999999999999999999864 3678999998
Q ss_pred CCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEe--Cc-eeEEEEecCC
Q 010070 238 KGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHS--DS-WDRFFIQGGQ 314 (519)
Q Consensus 238 ~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~--~~-~~~i~I~g~~ 314 (519)
+.++++++++++ +.|+|++++++|||++++|.++|... ..++++ +.++|++||++|+.+ +. .+.++|+|.+
T Consensus 154 ~~~l~g~~i~~~-~~ssq~~~~lllaa~~a~G~t~I~~~--~~~~~~---~~~~L~~~Ga~I~~~~~~~g~~~~~I~g~~ 227 (445)
T 2pqc_A 154 PKTPTPITYRVP-MASAQVKSAVLLAGLNTPGITTVIEP--IMTRDH---TEKMLQGFGANLTVETDADGVRTIRLEGRG 227 (445)
T ss_dssp CSSCCCCEEECS-SSCHHHHHHHHHHHHTSSSEEEEEES--SCCCCH---HHHHHHHTTCCEEEEECTTSCEEEEEETTC
T ss_pred CCCCCCeEEEeC-CCCHHHHHHHHHHHhhCCCceEEEEc--cCCHHH---HHHHHHHCCCEEEEecCCCCccEEEEeCCc
Confidence 435889999998 78999999999999999999988754 445665 449999999999865 41 1479999987
Q ss_pred cccCCccccccCChhhHHHHHHHHHhcCCe-EEEEccCCCCCcchhHHHHHHHHcCCEEEEe-----C----CeEEEeCC
Q 010070 315 KYKSPGNAFVEGDASSASYFVAGAAVTGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT-----E----NSVTVTGP 384 (519)
Q Consensus 315 ~l~~~~~~~i~~D~~~a~~~la~aa~~~g~-v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~-----~----~~i~i~g~ 384 (519)
+|+ +.++.+++|++.++||++++++++|. +++.|+..++.+.| +++.|++||++|+.. + +.++|.+.
T Consensus 228 ~l~-~~~~~v~~D~s~a~~~l~aa~~~~g~~v~i~~~~~~~~~~~--~~~~L~~mGa~i~~~~~~~~~g~~~~~i~v~~~ 304 (445)
T 2pqc_A 228 KLT-GQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRTG--LILTLQEMGADIEVINPRLAGGEDVADLRVRSS 304 (445)
T ss_dssp CCB-CCEEECCBCHHHHHHHHHHHHHSTTCEEEEEEEECCGGGCH--HHHHHHHHTCEEEEEEEEEETTEEEEEEEEECC
T ss_pred ccc-CceeEcCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcch--HHHHHHHcCCeEEEccccccCCCccCcEEEeCC
Confidence 787 67889999999999999999998876 99999986666765 999999999999973 2 45777653
Q ss_pred CCCCCCCCCcceeEEeCCCCC---cHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEE
Q 010070 385 PRDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVI 461 (519)
Q Consensus 385 ~~~~~~~~~l~g~~v~~~~~p---d~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I 461 (519)
.|+|+++++.++| |++|+|++++++++|+++|+++.++|+|||||+..++++|++||++|++++|.++|
T Consensus 305 --------~l~~~~i~~~~~p~~~D~~p~l~~~a~~a~G~s~i~~~~~lr~kEsdRi~~~~~eL~~~Ga~i~~~~d~~~I 376 (445)
T 2pqc_A 305 --------TLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVV 376 (445)
T ss_dssp --------CCBCCEECGGGGGGTGGGHHHHHHHHTTSBSEEEECCCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSCEEE
T ss_pred --------CCCceEeccccCCchHHHHHHHHHHHHhCCCcEEEEcccccccccchHHHHHHHHHHHCCCEEEEcCCEEEE
Confidence 3889999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCC--C-Cc--cc-cEEecCccHHHHHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 462 TPP--E-KL--KV-AAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 462 ~g~--~-~l--~~-~~i~~~~Dhr~ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
+|+ . ++ ++ ++|++|+|||+||+|++||+ +.++++|+|++|++++||+||++|++||++
T Consensus 377 ~g~~~~~~l~~~~~~~v~~~~DhR~ama~~ia~l~~~g~~~I~~~~~v~~~yp~f~~~l~~lGa~ 441 (445)
T 2pqc_A 377 RGRPDGKGLGNASGAAVATHLDHRIAMSFLVMGLVSENPVTVDDATMIATSFPEFMDLMAGLGAK 441 (445)
T ss_dssp ECCTTCTTCSCTTCCEECCTTCHHHHHHHHHHHTTSSSCEEESCCTTGGGTCTTHHHHHHHHTCE
T ss_pred eCCCCCCccccCCCceEECCCcHHHHHHHHHHHhcCCCCEEEcccchhcCcchHHHHHHHHhcCe
Confidence 986 3 56 67 89999999999999999998 566799999999999999999999999974
No 7
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=100.00 E-value=1.4e-66 Score=554.83 Aligned_cols=412 Identities=18% Similarity=0.228 Sum_probs=344.1
Q ss_pred cceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCC
Q 010070 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (519)
Q Consensus 77 ~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g 156 (519)
++.+.|+|.++++|+|++|||||++||+|++|+|++|+++|+|++.++|+..|+++|++||++|+++++...++|+|.+.
T Consensus 13 ~~~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~i~g~~~ 92 (479)
T 4fqd_A 13 EPLLEIHGGNRLSGAVRTSGFKHSLVTTVAAAATASAPVRIENCPDIVETAVLGEIFRAAGAHAHYDGADETFTVDASAW 92 (479)
T ss_dssp CEEEEEECCCCBCSEEECCBCHHHHHHHHHHHTTCSSEEEEESCCCSHHHHHHHHHHHHTTCEEEEETTTTEEEEECTTC
T ss_pred CceEEEeCCCcceEEEEcCCcHHHHHHHHHHHHhcCCCEEEccCCCchhHHHHHHHHHHcCCEEEEecCCCEEEEECCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999841124799998763
Q ss_pred C-ccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCC----CCChHHHHHHHHhCCCEEEEeCCCCcC
Q 010070 157 L-FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMR----ERPIGDLVTGLKQLGADVDCILGTNCP 231 (519)
Q Consensus 157 ~-~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~----~Rp~~~l~~~L~~lGa~v~~~~~~~~~ 231 (519)
. +..+ .. .++++++++|||.++++. .+.+++.++|+|+|+ +|||++|+++|++|||+|+..+ ++++
T Consensus 93 ~~~~~~------~~-~~~~~~ts~~~l~~l~a~-~~~~~~~l~G~~~l~~~~~~RPi~~~~~~L~~lGa~i~~~~-~g~~ 163 (479)
T 4fqd_A 93 DRAELP------AD-LVGRIHGSLYLLPALVSR-NGVARLSASGGCPIGEGPRGRPDEHLLDVMGRFGVTTRLTA-DGSV 163 (479)
T ss_dssp CCSCCC------HH-HHTTCSGGGGGHHHHHHH-TSEEEECC------------CCCHHHHHHHHTTTCEEEECT-TSCE
T ss_pred CCCCCC------hh-HhcccchhHHHHHHHHhc-CCCeEEEEeCCcccccCCCCCChHHHHHHHHHCCCEEEecc-CCce
Confidence 2 2222 12 257899999999998765 234688899999999 9999999999999999999753 3677
Q ss_pred cEEEEcCCCCCceEEEEcCCCC--HHHHHH---------HHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEE
Q 010070 232 PVRINGKGGLPGGKVKLSGKLS--SQYLTA---------LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVE 300 (519)
Q Consensus 232 pi~I~g~~~l~~~~i~l~gd~S--sq~~sa---------lllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~ 300 (519)
|+++ + ++++++|+++ |+| |||+|+ +||||++++|.++|++ ..+.+|+.+|+++|++||++|+
T Consensus 164 p~~~--~-~l~g~~i~l~-~~sSSSQfiS~lq~v~~t~~lLlaa~la~G~t~I~~---~~~~pdi~~Tl~~L~~~Ga~I~ 236 (479)
T 4fqd_A 164 DLTA--Q-RLTPCTIDML-DYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTLQH---PYLKPDVTDMVTVLRDLGADIE 236 (479)
T ss_dssp EEEC--S-SCCCCEEEGG-GGCSBTTTTBCTTHHHHHHHHHHHHHTSEEEEEEES---CCCSHHHHHHHHHHHHHTCCEE
T ss_pred EEEE--c-CccccEEEec-cccchHHhhccchhHHHHHHHHHHHHhCCCcEEEec---CCCChHHHHHHHHHHHCCCeEE
Confidence 8765 2 6999999995 544 477775 8889999999999873 3567999999999999999999
Q ss_pred EeCceeEEEEecC---CcccCCccccccCChhhHHHHHHHHHh-cCCeEEEEccCCCCCc-chhHHHHHHHHcCCEEEEe
Q 010070 301 HSDSWDRFFIQGG---QKYKSPGNAFVEGDASSASYFVAGAAV-TGGTVTVEGCGTSSLQ-GDVKFAEVLEKMGAKVTWT 375 (519)
Q Consensus 301 ~~~~~~~i~I~g~---~~l~~~~~~~i~~D~~~a~~~la~aa~-~~g~v~i~g~~~~~~~-~d~~~~~~L~~mGa~v~~~ 375 (519)
.+++ +.|+|+|. +.|+ +.++.+++|+++++||++++++ ++|+++|+|+..+++| .+..+++.|++||+++++.
T Consensus 237 ~~~~-~~i~I~g~g~~~~l~-~~~~~V~~D~s~Ag~fl~aaal~~gg~v~l~g~~~~s~~~~~~~i~~~L~~mGa~i~~~ 314 (479)
T 4fqd_A 237 FAGP-ETWVIHGRGPESLHR-PVDVTLIPDLIEVVTWICAGVLLADEPLRITGPGIDRAVHALAPEFDLLDRMGVRVDVG 314 (479)
T ss_dssp EEET-TEEEEEEECGGGCCC-CEEEECCBCHHHHHHHHHHHHHHBSSCEEEECTTHHHHHHHTHHHHHHHHHHTCCEEEC
T ss_pred EcCC-CEEEEeCCCCCCccC-CCceEeCCChHhHHHHHHHHHHcCCCeEEEeCCCCccccCchHHHHHHHHHCCCEEEEc
Confidence 8753 37999987 6676 6788999999999999998888 8999999998866555 3478999999999999999
Q ss_pred CCeEEEeCCCCCCCCCCCcceeEEeCCC---CCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeE
Q 010070 376 ENSVTVTGPPRDPYGRKHLRAVDVNMNK---MPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATV 452 (519)
Q Consensus 376 ~~~i~i~g~~~~~~~~~~l~g~~v~~~~---~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i 452 (519)
++.++|.+.. ..|+|++++... .+|++|++++++++++|+++|++. ++| +|+ .++++|++||++|
T Consensus 315 ~~~i~v~~~~------~~L~g~~i~~~~~~~~~D~~p~l~~~a~~A~G~t~I~e~----i~e-~R~-~~~~eL~~lGa~i 382 (479)
T 4fqd_A 315 ADEVTAHPLT------KPLRPVEFTAMSRGVFSDSQPFLALLGAYAEGPTYIREA----VWE-HRF-GFAPELEALGIRT 382 (479)
T ss_dssp SSEEEECCCS------SCBCCCEEEECTTSBCTTTHHHHHHHHTTBSEEEEEEES----SSS-SCC-TTHHHHHHHTCCE
T ss_pred CCeEEEEecC------CCCCCeEEecCCCCCCHHHHHHHHHHHHhCCCcEEEEcC----Ccc-cHH-HHHHHHHHCCCeE
Confidence 9999998721 258999998865 469999999999999999999642 244 566 5889999999999
Q ss_pred EEeCCeEEEcCCCCc--cccEEecCccHHHHHHHHHHHcC-CCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 453 EEGPDYCVITPPEKL--KVAAIDTYDDHRMAMAFSLAACA-DVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 453 ~~~~d~l~I~g~~~l--~~~~i~~~~Dhr~ama~~laa~~-~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
++++|.++|+|++++ ++.+|++ +|||+||+|++||+. .++++|+|++|++++||+||++|++||++
T Consensus 383 ~~~~d~~~I~g~~~l~~~g~~V~~-~DhR~Ama~~vaal~~~g~i~I~~~~~v~ksyp~f~~~L~~lGa~ 451 (479)
T 4fqd_A 383 AVDDTVLRVDGPCPPHRPGTDLRA-TDLRAAAVLLLAALAVPGRTTLRNHHHLARGYRDLVEDLVKLGAD 451 (479)
T ss_dssp EEETTEEEEEESCCCCCCSEEEEC-CSHHHHHHHHHHHTTSSSEEEEECGGGGGGTCSCHHHHHHHTTCE
T ss_pred EEECCEEEEeCCCcccCCCcEEeC-CCHHHHHHHHHHHHhCCCeEEEcCcccccCCHHHHHHHHHhCCCE
Confidence 999999999998778 8889999 899999999999974 66799999999999999999999999974
No 8
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=100.00 E-value=7.1e-65 Score=535.61 Aligned_cols=405 Identities=22% Similarity=0.308 Sum_probs=350.8
Q ss_pred cceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCC
Q 010070 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (519)
Q Consensus 77 ~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g 156 (519)
|+.+.|+|.+++.|+|++|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++|++++ .++|++.+.
T Consensus 1 m~~~~i~~~~~l~G~v~i~gsks~~~r~Llaa~la~g~t~i~n~~~~~dv~~t~~~L~~lGa~i~~~~---~~~I~~~~~ 77 (419)
T 1ejd_A 1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERXG---SVWIDASNV 77 (419)
T ss_dssp CEEEEEEECCCCEEEEECCBCHHHHHHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESS---SEEEECTTC
T ss_pred CCeEEEeCCCCceEEEEecCcHHHHHHHHHHHHHCCCcEEEecCCCcHHHHHHHHHHHHCCCEEEEcc---eEEEecCCC
Confidence 56688888778999999999999999999999999999999999999999999999999999998653 688887641
Q ss_pred -CccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEE
Q 010070 157 -LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (519)
Q Consensus 157 -~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I 235 (519)
.+..+ . . ++++++++++++.++++. .+..++.++|+++++.||++.+++.|++||++|++.+ +++|+++
T Consensus 78 ~~~~~~-----~-d-~~~~~ras~~l~~alla~-~~~~~v~l~G~~~l~~rp~~~~~~~L~~mGa~i~~~~--g~~~v~~ 147 (419)
T 1ejd_A 78 NNFSAP-----Y-D-LVKTMRASIWALGPLVAR-FGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEE--GYVKASV 147 (419)
T ss_dssp CCCEEC-----H-H-HHTTCGGGGGGHHHHHHH-HSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEET--TEEEEEC
T ss_pred CCCcCc-----h-H-HhhhhhHHHHHHHHHhhc-CCceEEEecCCcccCCCchHHHHHHHHHCCCEEEEcC--CEEEEEE
Confidence 12222 1 1 356778888888777653 2346788999999999999999999999999999844 4555554
Q ss_pred EcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCc
Q 010070 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (519)
Q Consensus 236 ~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~ 315 (519)
.+++++.+++++. .|+|+++++++||++++|.++|++ ..+++|+++|+++|++||++|+.+++ +.++|+|+++
T Consensus 148 --~~~L~g~~i~~~~-~s~~~~~~ll~aa~~a~G~t~I~~---~~~e~~i~~t~~~L~~~Ga~i~~~~~-~~i~I~g~~~ 220 (419)
T 1ejd_A 148 --NGRLKGAHIVMDK-VSVGATVTIMSAATLAEGTTIIEN---AAREPEIVDTANFLVALGAKISGQGT-DRITIEGVER 220 (419)
T ss_dssp --SSSCBCCEEECSS-CCHHHHHHHHHHHTTSBSEEEEET---CCCCHHHHHHHHHHHHTTCEEECTTS-SEEEEECCSC
T ss_pred --cCCccceEEecCC-CCHHHHHHHHHHHhcCCCcEEEEe---CCCCchHHHHHHHHHHCCCEEEEccC-CEEEEeCCCc
Confidence 2368999999886 799999999999999999998874 35688999999999999999987653 4799999888
Q ss_pred ccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcc
Q 010070 316 YKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLR 395 (519)
Q Consensus 316 l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~ 395 (519)
|+ +.++.+++|++.|+||++++++++|+++|+|+...+++ .|++.|++||+++++.++.++|.+.+ ..|+
T Consensus 221 l~-g~~~~v~~D~s~A~~~~~aa~~~~g~v~i~~~~~~~~~---~~~~~L~~mGa~i~~~~~~i~v~~~~------~~l~ 290 (419)
T 1ejd_A 221 LG-GGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQPDTLD---AVLAKLREAGADIETGEDWISLDMHG------KRPK 290 (419)
T ss_dssp BC-CEEEECCBCHHHHHHHHHHHHTTTCEEEEESCCGGGCH---HHHHHHHHTTCEEEECSSEEEEECTT------CCCB
T ss_pred cc-ccEEEeeCCHHHHHHHHHHHHhcCCeEEEeCcCcccHH---HHHHHHHHCCCEEEEcCCEEEEEecC------CCcc
Confidence 87 77899999999999999999999999999999876665 69999999999999999999998621 2488
Q ss_pred eeEEeCCCCC----cHHHHHHHHHHcCCCCEEEe-cccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCcccc
Q 010070 396 AVDVNMNKMP----DVAMTLAVVALFADGPTAIR-DVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVA 470 (519)
Q Consensus 396 g~~v~~~~~p----d~~~~Lavaa~~a~G~s~I~-~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~ 470 (519)
++++++.++| |++|.+++++++++|+++|+ ++.++|+|| +++|+|||+++++.+|.++|+|+++++|+
T Consensus 291 ~~~i~~~~~p~~~~D~~p~la~la~~a~g~s~i~~~i~~~R~~~-------~~eL~~lG~~i~~~~d~~~I~g~~~l~g~ 363 (419)
T 1ejd_A 291 AVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMH-------VPELIRMGAHAEIESNTVICHGVEKLSGA 363 (419)
T ss_dssp CCCEECCSTTSCCGGGHHHHHHHHHTSBSEEEEECCSCSSCCTH-------HHHHHHTTCEEEEETTEEEEECCSCCBCC
T ss_pred ceEEeCCCCCCCcHHHHHHHHHHHHhCCCcEEEEccchHhHHHH-------HHHHHHCCCEEEEECCEEEEeCCCCCcCC
Confidence 9999998777 99999999999999999999 688887763 78999999999999999999998789999
Q ss_pred EEecCccHHHHHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 471 AIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 471 ~i~~~~Dhr~ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
+|++ +|||+||+|++||+ +.++++|+|++|++|+||+||++|++||++
T Consensus 364 ~v~~-~DhR~ama~~ia~l~~~g~~~I~~~~~v~~syp~f~~~l~~lg~~ 412 (419)
T 1ejd_A 364 QVMA-TDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGAN 412 (419)
T ss_dssp EECC-SSHHHHHHHHHHHHHSBEEEEECCTHHHHHHSSSHHHHHHTTTCE
T ss_pred EEeC-CcHHHHHHHHHHHhcCCCCEEECCcCeeeCcCccHHHHHHHhCCE
Confidence 9998 79999999999998 566799999999999999999999999873
No 9
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=100.00 E-value=1.8e-64 Score=536.01 Aligned_cols=402 Identities=23% Similarity=0.332 Sum_probs=346.4
Q ss_pred cCcceEEEccCCceeEEEEecCChhHHHHHHHHHHhc-CCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEc
Q 010070 75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALS-EGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEG 153 (519)
Q Consensus 75 ~~~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa-~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g 153 (519)
..|+.++|+|.++++|+|++|||||+++|+|++|+|+ +|+++|+|++.++|+..|+++|++||++|++++ ..++|+|
T Consensus 23 ~~m~~~~i~~~~~l~G~v~vpgsKs~~~~~l~aa~La~~g~s~i~n~~~~~D~~~~~~~l~~lG~~i~~~~--~~~~i~~ 100 (454)
T 3r38_A 23 NAMEKIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLASKGTSVLKNVPNLSDVFTINEVLKYLNADVSFVN--DEVTVDA 100 (454)
T ss_dssp CTTCEEEEECCCCCEEEEECCBCHHHHHHHHHHGGGEEESCEEEESCCCCHHHHHHHHHHHHTTCEEEEET--TEEEEEC
T ss_pred cCcceEEEeCCCCceEEEEcCCCHHHHHHHHHHHHhCCCCeEEECCCCCcHHHHHHHHHHHHCCCEEEEEC--CEEEEEC
Confidence 3488899999999999999999999999999999999 999999999999999999999999999999865 4799998
Q ss_pred CCC-CccccccCCCceEEEeCCchhhhh----HHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCC
Q 010070 154 CGG-LFPLAKQQTGEIELFLGNAGTAMR----PLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGT 228 (519)
Q Consensus 154 ~~g-~~~~~~~~~~~~~l~~g~sgt~~r----~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~ 228 (519)
.+. .+..| .+..+++| ||.++++. .+.+++.++|+|+|++||+++++++|++|||+|+..+
T Consensus 101 ~~~~~~~~~-----------~~~~~~~Ras~l~l~~l~a~-~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~-- 166 (454)
T 3r38_A 101 TGEITSDAP-----------FEYVRKMRASIVVMGPLLAR-TGSARVALPGGCAIGSRPVDLHLKGFEAMGAVVKIEN-- 166 (454)
T ss_dssp CSCCCCEEC-----------SHHHHHCGGGGGGHHHHHHH-HSEEEEECCCCCSSSSCCSHHHHHHHHHTTCEEEEET--
T ss_pred CCCCCCcCC-----------hhHhhccchHHHHHHHHHhC-CCCeEEEeCCCcccccCCHHHHHHHHHHCCCEEEecC--
Confidence 752 12222 12345677 66665543 3456889999999999999999999999999999753
Q ss_pred CcCcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEE
Q 010070 229 NCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRF 308 (519)
Q Consensus 229 ~~~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i 308 (519)
+++| ++++ ++++++++++. .|+|+++++|+||++++|.++|++ ..+.||+.+|+++|++||++|+.++. ..|
T Consensus 167 g~~~--i~~~-~l~g~~~~l~~-~S~q~~s~lLlAa~la~G~t~I~~---~~~~p~i~~t~~~L~~~Ga~I~~~~~-~~i 238 (454)
T 3r38_A 167 GYIE--ATAE-KLVGAKVYLDF-PSVGATQNIMMAATLAEGTTVIEN---VAREPEIVDLANFLNQMGARVIGAGT-EVI 238 (454)
T ss_dssp TEEE--EECS-SCBCCEEECSS-CCHHHHHHHHHHHTTSBSEEEEES---CCCCHHHHHHHHHHHHTTCCEECTTS-SEE
T ss_pred CEEE--EEEc-CccCcEEEecC-CCHHHHHHHHHHHhcCCCcEEEEc---CCCCcHHHHHHHHHHHCCCCEEECCC-eEE
Confidence 4544 5554 69999999996 799999999999999999999874 34678999999999999999987653 489
Q ss_pred EEecCCcccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCC
Q 010070 309 FIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDP 388 (519)
Q Consensus 309 ~I~g~~~l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~ 388 (519)
+|+|.++|+ +.++.+++|+++++||++++++++|+++++|+...+++ .+++.|++||+++++.++.++|.+.
T Consensus 239 ~I~g~~~l~-~~~~~v~~D~s~A~~~l~aaal~gg~v~i~g~~~~~~~---~i~~~L~~mGa~i~~~~~~i~V~g~---- 310 (454)
T 3r38_A 239 RIEGVKELT-ATEHSIIPDRIEAGTFMIAAAITGGNVLIEDAVPEHIS---SLIAKLEEMGVQIIEEENGIRVIGP---- 310 (454)
T ss_dssp EEECCSCEE-CCEEECCBCHHHHHHHHHHHHHTTCEEEEESCCGGGGH---HHHHHHHHTTCEEEEC--CEEEECC----
T ss_pred EEecCcccc-ccccccCCChhHHHHHHHHHHHcCCcEEEcCCCchHHH---HHHHHHHHCCCEEEecCCeEEEEEC----
Confidence 999987787 57889999999999999999999999999998765554 7999999999999999888999874
Q ss_pred CCCCCcceeEEeCCCCC----cHHHHHHHHHHcCCCCEEEec-ccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcC
Q 010070 389 YGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRD-VASWRVKETERMIAICTELRKLGATVEEGPDYCVITP 463 (519)
Q Consensus 389 ~~~~~l~g~~v~~~~~p----d~~~~Lavaa~~a~G~s~I~~-~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g 463 (519)
+.|+|++++..++| |+.|.+++++++++|+++|.+ +.+.|+|| +++|++||++|++++|.++|+|
T Consensus 311 ---~~L~g~~i~~~~~p~~p~D~~~~l~~laa~A~G~t~i~e~i~~~R~~~-------~~~L~~mGa~i~~~~d~l~I~G 380 (454)
T 3r38_A 311 ---DKLKAVDVKTMPHPGFPTDMQSQMMVIQMLSEGTSIMTETVFENRFMH-------VEEMRRMNADMKIEGHSVIISG 380 (454)
T ss_dssp ---SSCCCCCEEBCSTTSBCGGGHHHHHHHHHHSSSEEEEECSSCTTCCTT-------HHHHHHTTCCEEEETTEEEEEC
T ss_pred ---CCccceEEecccCCCCcccHHHHHHHHHHhcCCCEEEEcCccccHHHH-------HHHHHhCCCEEEEECCEEEEeC
Confidence 25899999988787 999999999999999999995 66777664 4789999999999999999999
Q ss_pred CCCccccEEecCccHHHHHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 464 PEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 464 ~~~l~~~~i~~~~Dhr~ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
+++++|+++++ +|||+||+|++||+ +.+.++|+|++|++++||+||++|++||++
T Consensus 381 ~~~l~g~~v~~-~DhR~Ama~~vaal~a~G~~~I~~~~~v~~s~p~f~~~L~~lGa~ 436 (454)
T 3r38_A 381 PAKLQGAEVAA-TDLRAAAALILAGLVADGYTQVTELKYLDRGYNNFHGKLQALGAD 436 (454)
T ss_dssp SCCCBCCEEEC-CSHHHHHHHHHHHHHSBSEEEEECTHHHHTTCSSHHHHHHHTTCE
T ss_pred CCCceeeEEec-CCHHHHHHHHHHHHhCCCcEEEeCCccccCChhHHHHHHHhCCCE
Confidence 88899999999 89999999999997 577789999999999999999999999974
No 10
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=100.00 E-value=1.7e-64 Score=533.24 Aligned_cols=403 Identities=19% Similarity=0.252 Sum_probs=351.0
Q ss_pred CcceEEEccCCceeEEEEecCChhHHHHHHHHHHhcCCceEEecCCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCC
Q 010070 76 KASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG 155 (519)
Q Consensus 76 ~~~~~~i~p~~~l~G~i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~ 155 (519)
.|+.+.|.|.++++|+|++|||||++||+|++|+|++|+++|+|++.++|+..|+++|++||++|++++ ..++|++ +
T Consensus 9 ~m~~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~~~i~n~~~~~D~~~~~~~l~~lG~~i~~~~--~~~~i~~-~ 85 (425)
T 2yvw_A 9 YRDYFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEFLN--NTVFINP-S 85 (425)
T ss_dssp CCCEEEEECCCCCEEEEECCBCHHHHHHHHHHGGGCSSCEEEESCCCSHHHHHHHHHHHHTTCEEEEET--TEEEEEC-C
T ss_pred CcceEEEeCCCcceEEEEccCcHHHHHHHHHHHHhCCCCEEEecCCchHHHHHHHHHHHHCCCEEEEeC--CEEEEEC-C
Confidence 388889998889999999999999999999999999999999999999999999999999999998765 3688988 5
Q ss_pred C-CccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEE
Q 010070 156 G-LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVR 234 (519)
Q Consensus 156 g-~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~ 234 (519)
. .+..| ..+++++++++|+|.++++.. +.+.+.++|+|+|++||++.|++.|++|||+|++++ +++|++
T Consensus 86 ~~~~~~p-------~~~~~~~rts~~~l~~l~a~~-~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~--g~~~i~ 155 (425)
T 2yvw_A 86 INSFITN-------QEIIRRMRASVLSLGPLLGRF-GRAVVGLPGGCSIGARPIDQHLKFFKEAGADVEVRE--GYVYVN 155 (425)
T ss_dssp CCCCEEC-------HHHHHHCGGGGGGHHHHHHHH-SEEEEECCCCBTTBCCCCHHHHHHHHHTTCEEEEET--TEEEEE
T ss_pred CCCCCCc-------hhhhcccchHHHHHHHHhccC-CcEEEEECCCcccccCCHHHHHHHHHHCCCEEEecC--CEEEEE
Confidence 2 33333 125789999999999987642 346899999999999999999999999999998733 466766
Q ss_pred EEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCC
Q 010070 235 INGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314 (519)
Q Consensus 235 I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~ 314 (519)
+ + ++++++++++. .|+|+++++||+|+++.|.++|++ ..+.+|+++|+++|++||++|+.+++ +.+ |+|.+
T Consensus 156 ~--~-~l~g~~i~~~~-~S~~~~s~lllaa~la~g~t~i~~---~~~~~~i~~t~~~L~~~Ga~i~~~~~-~~i-I~g~~ 226 (425)
T 2yvw_A 156 L--K-EKRRVHFKFDL-VTVTGTENALLYLASVPEESILEN---IALEPEVMDLIEVLKKMGAHVKVEGR-SAY-VKGSE 226 (425)
T ss_dssp C--S-SCCCCEEECSS-CCHHHHHHHHHHHTTCSSEEEEES---CCCCHHHHHHHHHHHHTTCEEEEETT-EEE-EECCS
T ss_pred e--c-CccceEEeccc-ccHHHHHHHHHHHHhcCCCEEEeC---CCCCchHHHHHHHHHHCCCeEEEcCC-EEE-EeCCC
Confidence 5 3 58888999996 799999999999999999998873 35789999999999999999987764 367 99877
Q ss_pred cccCCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCc
Q 010070 315 KYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHL 394 (519)
Q Consensus 315 ~l~~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l 394 (519)
.|+ +.++.+++|+++++||++++++++|+++++|+...+++ .+++.|++||++|++.++.++|.+. +.|
T Consensus 227 ~l~-~~~~~v~~D~s~A~t~l~aaal~~g~v~l~g~~~~~~~---~l~~~L~~mGa~i~~~~~~i~i~~~-------~~L 295 (425)
T 2yvw_A 227 NLK-GFTHSVIPDRIEAGTFMVGAVLTDGEILLENARINHLR---AVVEKLKLIGGEVVEENGNLRVFRK-------ESL 295 (425)
T ss_dssp SCC-CCEEECCBCHHHHHHHHHHHHHTTCEEEEESCCGGGCH---HHHHHHHHHTEEEEEETTEEEEEEC-------SCC
T ss_pred ccC-CccccccCchhHHHHHHHHHHhCCCcEEEeCCCchHHH---HHHHHHHHCCCEEEEcCCEEEEEec-------CCc
Confidence 776 66788999999999999999999999999998765554 6999999999999998888999873 148
Q ss_pred ceeEEeCCCCC----cHHHHHHHHHHcCCCCEEEec-ccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccc
Q 010070 395 RAVDVNMNKMP----DVAMTLAVVALFADGPTAIRD-VASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKV 469 (519)
Q Consensus 395 ~g~~v~~~~~p----d~~~~Lavaa~~a~G~s~I~~-~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~ 469 (519)
+|++++..++| |+.|.+++++++++|+++|++ +.+.|+ ..+++|++||++|++.+|.++|+|++++++
T Consensus 296 ~g~~i~~~~~p~~p~d~~~~~~~aa~~a~G~t~I~~~~~e~r~-------~~~~~L~~~Ga~i~~~~d~l~I~g~~~l~g 368 (425)
T 2yvw_A 296 RACDIETQVYPGFPTDMQAQFMALLSVAKGKSRIKENIFEHRF-------HHAQELNRLGANITVRGNTAYVEGVERLYG 368 (425)
T ss_dssp BCCCEEBCSTTSBCHHHHHHHHHHHTTSBSEEEEECSSCTTCC-------HHHHHHHTTTCCEEEETTEEEEECCSCCBC
T ss_pred cceEEeCCCCCCCcccHHHHHHHHHHHCCCeEEEEcCcHHHHH-------HHHHHHHhCCCEEEEECCEEEEeCCCCCcC
Confidence 99999887666 999999999999999999996 555543 357899999999999999999999878999
Q ss_pred cEEecCccHHHHHHHHHHHc-CCCCEEEeCCcccccccccHHHHHHhcccC
Q 010070 470 AAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 470 ~~i~~~~Dhr~ama~~laa~-~~~~v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
.++.+ +|||+||+|++|++ +.++++|+|++|++++||+||++|++||++
T Consensus 369 ~~v~~-~D~r~A~~~~~aal~a~g~v~I~~~~~~~r~~p~f~~~L~~lGa~ 418 (425)
T 2yvw_A 369 SEVYS-TDLRASASLVLAGLVAQGETVVRDVYHLDRGYEKLEEKLKKLGAD 418 (425)
T ss_dssp CEEEC-CCTTTTHHHHHHHHHSBSEEEEECTHHHHHHCSSHHHHHHHTTCC
T ss_pred CeecC-CcHHHHHHHHHHHHhCCCcEEEeCceeecCchHHHHHHHHHcCCe
Confidence 98987 79999999999997 677799999999999999999999999985
No 11
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=100.00 E-value=1.4e-33 Score=297.88 Aligned_cols=324 Identities=18% Similarity=0.228 Sum_probs=243.7
Q ss_pred EEEecCChhHHHHHHHHHHh-cCCceEEec--CCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCc
Q 010070 91 TVTLPGSKSLSNRILLLAAL-SEGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGE 167 (519)
Q Consensus 91 ~i~~pgsKs~s~R~l~~AaL-a~g~~~i~n--~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~ 167 (519)
.+.+ |....+.|+|+..++ ..+.+++.| .+..||+..++++|++|||+|..+++..+++|+|.++ +... .
T Consensus 91 ~i~~-g~sgtt~r~l~g~l~~~~g~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~g~~p~~i~g~~~-l~g~-----~ 163 (441)
T 3slh_A 91 ALDC-GNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPR-LTGI-----H 163 (441)
T ss_dssp CEEC-TTCHHHHHHHHHHHTTSSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTEEEEEEECCTT-CBCC-----E
T ss_pred eeee-ccccccHHHHHHHHHhCCCEEEEeCCcccccCCHHHHHHHHHHcCCEEEecCCeEEEEEEcCCC-ccce-----E
Confidence 4554 444578888876554 467889998 5678999999999999999996556667899988532 3322 2
Q ss_pred eEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHH-HHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEE
Q 010070 168 IELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGD-LVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKV 246 (519)
Q Consensus 168 ~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~-l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i 246 (519)
..+..-++..+..+|+|++.+ ++.+++.. ..++.+ ++++|++||++|+..+ + +++|+|.+++++.++
T Consensus 164 i~l~~~Ssq~~s~lLlAa~~a---~g~t~i~e-----~~~~~~~t~~~L~~~Ga~i~~~~--~--~i~I~g~~~l~~~~~ 231 (441)
T 3slh_A 164 YQLPMASAQVKSCLLLAGLYA---RGKTCITE-----PAPSRDHTERLLKHFHYTLQKDK--Q--SICVSGGGKLKANDI 231 (441)
T ss_dssp EECSSCCHHHHHHHHHHHTTS---BSEEEEEC-----SSCCCCHHHHHHHHTTCCCEECS--S--CEEEETTCCCBCCCE
T ss_pred EEecCCCHHHHHHHHHHHHhc---CCCeEeeC-----CcccHHHHHHHHHHCCCeEEEeC--C--EEEEcCCCccccceE
Confidence 233333455566688887665 34555542 234444 4999999999999753 2 699999777999999
Q ss_pred EEcCCCCHHHHHHHHHHhhcC-CCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCcee-------EEEEecCCcccC
Q 010070 247 KLSGKLSSQYLTALLMAAPLA-LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD-------RFFIQGGQKYKS 318 (519)
Q Consensus 247 ~l~gd~Ssq~~salllAA~la-~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~-------~i~I~g~~~l~~ 318 (519)
.+++|+|++ +.|++|++++ +++++|++... .++...++++|++||++|+.++++. .++|++. +++
T Consensus 232 ~V~~D~ssA--a~~l~aaal~~g~~v~l~g~~~---~~~~~~~l~~L~~mGa~i~~~~~~~~~~e~~~~i~v~~~-~l~- 304 (441)
T 3slh_A 232 SIPGDISSA--AFFIVAATITPGSAIRLCRVGV---NPTRLGVINLLKMMGADIEVTHYTEKNEEPTADITVRHA-RLK- 304 (441)
T ss_dssp ECCBCHHHH--HHHHHHHHHSTTCEEEEEEEEC---CGGGCHHHHHHHHHTCEEEEEEEEEETTEEEEEEEEECC-CCB-
T ss_pred EeCCCHHHH--HHHHHHHHhcCCCEEEEcCCCC---CccHHHHHHHHHHcCCEEEEcCCccccCccceEEEEecC-CCC-
Confidence 999999986 4566666676 56788887631 1222457899999999999875421 3677753 454
Q ss_pred Ccccc---cc--CChhhHHHHHHHHHhcCCeEEEEccCCCCCc-ch--hHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCC
Q 010070 319 PGNAF---VE--GDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYG 390 (519)
Q Consensus 319 ~~~~~---i~--~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~ 390 (519)
+.++. +| +|. ...+++++++++|+++|+|+...+++ +| ..++++|++||++|++.+|.++|+|.
T Consensus 305 g~~i~~~~~p~~~D~--~p~l~~~aa~A~G~t~I~~i~~lR~kEsdRi~~l~~eL~kmGa~i~~~~d~l~I~G~------ 376 (441)
T 3slh_A 305 GIDIPPDQVPLTIDE--FPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQGG------ 376 (441)
T ss_dssp CCEECGGGHHHHGGG--HHHHHHHHHTSBSEEEECSCGGGGGSSSCHHHHHHHHHHHTTCEEEEETTEEEEECC------
T ss_pred ceEEecccCCCcHHH--HHHHHHHHHhCCCeEEEEeccccccccchHHHHHHHHHHHCCCEEEEeCCEEEEECC------
Confidence 33332 11 233 34788888899999999999887776 35 56799999999999999999999983
Q ss_pred CCCcceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEE
Q 010070 391 RKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEE 454 (519)
Q Consensus 391 ~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~ 454 (519)
+|+|.++++++|||++|+++++++.++|+++|+|++++. .| |++|++.|+++|++|+.
T Consensus 377 --~L~g~~v~s~~DhRiamalaia~l~a~g~~~I~~~~~v~--ks--yp~f~~~l~~lGa~i~~ 434 (441)
T 3slh_A 377 --TLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVK--TS--FPNFVELANEVGMNVKG 434 (441)
T ss_dssp --CCCCEEEECTTCHHHHHHHHHHHHHCSSCEEEECCGGGG--GT--CTTHHHHHHHHTCCEEE
T ss_pred --CCCCCEEECCCCHHHHHHHHHHHHhCCCCEEEecccEec--Cc--hHHHHHHHHhCCCeEEE
Confidence 388999999999999999999999999999999999974 23 99999999999999965
No 12
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=100.00 E-value=4.9e-33 Score=294.76 Aligned_cols=320 Identities=22% Similarity=0.233 Sum_probs=241.5
Q ss_pred CChhHHHHHHHHH-HhcCCceEEecC--CCChhHHHHHHHHHHcCCEEEEc--CCcceEEEEcCCCCccccccCCCceEE
Q 010070 96 GSKSLSNRILLLA-ALSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEED--FAMKRAIVEGCGGLFPLAKQQTGEIEL 170 (519)
Q Consensus 96 gsKs~s~R~l~~A-aLa~g~~~i~n~--~~~~dv~~~l~aL~~lGa~v~~~--~~~~~l~I~g~~g~~~~~~~~~~~~~l 170 (519)
|.-..+.|+|... ++.++.+++.|- +..||+..++++|++||++|++. ++..+++|+|.+ +... ...+
T Consensus 117 g~sgt~~R~l~~~la~~~~~~~l~G~~~l~~RPi~~~l~~L~~lGa~i~~~~~~g~~p~~I~g~~--l~gg-----~i~i 189 (450)
T 3nvs_A 117 GNAGTAMRPLAAALCLGQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTG--LQAG-----TVTI 189 (450)
T ss_dssp TTCHHHHHHHHHHTTSSBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSSTTSSCEEEECCC--CCSE-----EEEE
T ss_pred cCccchHHHHHHHHhcCCcEEEEeCCcccccCCHHHHHHHHHHCCCEEEEEcCCCeEeEEEEcCC--cCce-----EEEe
Confidence 6666888866533 245778889985 68999999999999999999984 344579998853 3322 2223
Q ss_pred EeCCchh-hhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCc-eEEE
Q 010070 171 FLGNAGT-AMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPG-GKVK 247 (519)
Q Consensus 171 ~~g~sgt-~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l-~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~-~~i~ 247 (519)
....|+. ...+|+|++++ ++.++|.+...+.+||+.++ +++|++||++|+..+ ..+++|+|.+.+.+ .++.
T Consensus 190 ~g~~sSq~~s~lLlAa~la---~g~t~I~~~~~~~s~p~i~~t~~~L~~~Ga~i~~~g---~~~i~I~g~~~l~~~~~~~ 263 (450)
T 3nvs_A 190 DGSISSQFLTAFLMSAPLA---QGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD---YQEFVIPAGQSYVSPGQFL 263 (450)
T ss_dssp CCSSCTHHHHHHHHHGGGS---SSCEEEEESSCCSSHHHHHHHHHHHHHTTCCCEEET---TTEEEECTTCCCBCCSEEE
T ss_pred CCCCcHHHHHHHHHHHHHC---CCcEEEEeCCCcCCchHHHHHHHHHHHCCCCEEecC---CcEEEEcCCccccCCcceE
Confidence 2212321 23566665544 34455554434567888887 999999999998743 33699998766765 4999
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCcccc--cc
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF--VE 325 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~--i~ 325 (519)
+++|+|++ +.|++||++.+|+++|++.+....++ +..++++|++||++|+.+++ .+++.+. +++ +.++. ..
T Consensus 264 v~~D~s~A--s~~l~aaal~~g~v~i~~~~~~~~~~-D~~i~~~L~~mGa~i~~~~~--~i~v~~~-~L~-g~~i~~~~~ 336 (450)
T 3nvs_A 264 VEGDASSA--SYFLAAAAIKGGEVKVTGIGKNSIQG-DIQFADALEKMGAQIEWGDD--YVIARRG-ELN-AVDLDFNHI 336 (450)
T ss_dssp CCBCHHHH--HHHHHHHHHHCSEEEEESCCTTCSCG-GGGHHHHHHHHTCEEEECSS--EEEEECC-CCB-CCEEECTTC
T ss_pred ecCCHHHH--HHHHHHHHhcCCeEEEccCCcccccc-hHHHHHHHHHcCCeEEEeCC--EEEEecC-CcC-cEEeecCCC
Confidence 99999886 67888888888999999776433333 34568999999999998876 6778764 565 55553 34
Q ss_pred CChhhHHHHHHHHHhcCCeEEEEccCCCCCc-ch--hHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcceeEEeCC
Q 010070 326 GDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMN 402 (519)
Q Consensus 326 ~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~v~~~ 402 (519)
||. +..++++++++.|+.+|+|+...+++ .| ..+.++|++||++|++.++.++|+|.. .|+|.+++++
T Consensus 337 PD~--~~~l~~~aa~A~G~t~I~~~~~lR~ke~dRi~~l~~eL~kmGa~I~~~~d~i~I~G~~-------~L~g~~v~~~ 407 (450)
T 3nvs_A 337 PDA--AMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPT-------KLIHAAIDTY 407 (450)
T ss_dssp TTT--HHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSEEEEECCS-------SCCCCEECCT
T ss_pred cCH--HHHHHHHHHHCCCCEEEechhhccCCCchHHHHHHHHHHHcCCEEEEcCCEEEEeCCC-------CCCCCEEecC
Confidence 565 45788888888999999999877765 44 678999999999999999999999863 5889999999
Q ss_pred CCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcC
Q 010070 403 KMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLG 449 (519)
Q Consensus 403 ~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klG 449 (519)
+|||++|+++++++.++ .++|.|++++. .| ||+||+.|+++|
T Consensus 408 ~DhR~ama~aiaal~a~-~~~I~~~~~v~--ks--yp~f~~~l~~lg 449 (450)
T 3nvs_A 408 DDHRMAMCFSLVALSDT-PVTINDPKCTS--KT--FPDYFDKFAQLS 449 (450)
T ss_dssp TCHHHHHHHHGGGGSSS-CEEEESGGGGG--GT--CTTHHHHHHHHB
T ss_pred ccHHHHHHHHHHHHhCC-CEEEECcCeee--Cc--chhHHHHHHHhc
Confidence 99999999999999875 57799999874 34 999999999987
No 13
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=100.00 E-value=1.3e-32 Score=290.23 Aligned_cols=327 Identities=15% Similarity=0.206 Sum_probs=240.6
Q ss_pred EEEecCChhHHHHHHHHHH-hcCCceEEec--CCCChhHHHHHHHHHHcCCEEEEcC--CcceEEEEcCCCCccccccCC
Q 010070 91 TVTLPGSKSLSNRILLLAA-LSEGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDF--AMKRAIVEGCGGLFPLAKQQT 165 (519)
Q Consensus 91 ~i~~pgsKs~s~R~l~~Aa-La~g~~~i~n--~~~~~dv~~~l~aL~~lGa~v~~~~--~~~~l~I~g~~g~~~~~~~~~ 165 (519)
.|.+ |.-..+.|+|+..+ ...+.+.+.| .+..||+..++++|++||++|+..+ +..|++|+|.+ +...
T Consensus 90 ~i~~-g~SGt~mRll~g~la~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~~~~~~Pl~i~g~~--l~g~---- 162 (455)
T 3rmt_A 90 ILDV-GNSGTTTRLILGILSTLPFHSVIIGDESIGKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRGGQ--LKGI---- 162 (455)
T ss_dssp CEEC-TTCHHHHHHHHHHHTTSSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEHHHHTEEEEEEECCS--CBCC----
T ss_pred eeec-ccccccHHHHHHHHHcCCcEEEEeCCcccccCCHHHHHHHHHHCCCEEEEecCCCcccEEEEeCC--ccce----
Confidence 4554 44447888776433 3457788887 4578999999999999999999764 24678998742 3332
Q ss_pred CceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceE
Q 010070 166 GEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGK 245 (519)
Q Consensus 166 ~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~ 245 (519)
...+..-+|+.+..+|+|++.+ ++.+++.. ...+||+ ++++|++||++|+... + .++|+|.+.+.+.+
T Consensus 163 -~i~l~~~Ssq~~s~lLlAa~~a---~G~t~i~e--p~~s~~~--t~~~L~~~Ga~i~~~g--~--~i~I~g~~~l~~~~ 230 (455)
T 3rmt_A 163 -DFHSPVASAQMKSAILLAGLRA---EGKTSVTE--PAKTRDH--TERMLEAFGVNIEKDG--L--TVSIEGGQMLTGQH 230 (455)
T ss_dssp -EEECSSCCHHHHHHHHHHHHTS---BSCEEEEC--SSCCCCH--HHHHHHHTTCCEEEET--T--EEEECSCCCCBCCE
T ss_pred -EEEEccCcHHHHHHHHHHHHhc---CCCEEEEC--CcCcHHH--HHHHHHHCCCCEEecC--C--EEEEcCCccccCCe
Confidence 2233323455566788887655 23344543 2446664 7999999999999753 2 48999987899999
Q ss_pred EEEcCCCCHHHHHHHHHHhhc-CCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCce-------eEEEEecCCccc
Q 010070 246 VKLSGKLSSQYLTALLMAAPL-ALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSW-------DRFFIQGGQKYK 317 (519)
Q Consensus 246 i~l~gd~Ssq~~salllAA~l-a~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~-------~~i~I~g~~~l~ 317 (519)
+.|++|+|+. +.|+.||++ .+++++|++...... ...++++|++||++|+..+++ ..++|.+. +++
T Consensus 231 ~~V~~D~s~A--a~~l~aaai~~gg~v~i~~~~~~~~---~~~il~~L~~mGa~i~~~~~~~~~ge~~~~i~v~~~-~l~ 304 (455)
T 3rmt_A 231 VVVPGDISSA--AFFLVAGAMVPHSRITLTNVGINPT---RAGILEVLKQMGATLAMENERVQGGEPVADLTIETS-VLQ 304 (455)
T ss_dssp EECCBCHHHH--HHHHHHHHHSTTEEEEEEEEECCTT---TTHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEECC-CCB
T ss_pred eECCCCHHHH--HHHHHHHHhcCCCEEEECCCCCchh---HHHHHHHHHHcCCEEEEcCCcccCCccceEEEEecC-Cce
Confidence 9999999875 456666667 577899987742122 244789999999999986542 12788764 455
Q ss_pred CCcccc--ccC---ChhhHHHHHHHHHhcCCeEEEEccCCCCCc-ch--hHHHHHHHHcCCEEEEeCCeEEEeCCCCCCC
Q 010070 318 SPGNAF--VEG---DASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPY 389 (519)
Q Consensus 318 ~~~~~~--i~~---D~~~a~~~la~aa~~~g~v~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~ 389 (519)
+.++. ..| |. ...++++++++.|+.+|+|+...+++ +| ..++++|++||++++.++|.++|+|.+
T Consensus 305 -~~~i~~~~~P~~~D~--~p~lavla~~a~G~s~I~~~~~LrvkEsdRi~a~~~eL~kmGa~i~~~~d~l~I~G~~---- 377 (455)
T 3rmt_A 305 -GVEIGGDIIPRLIDE--IPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGASIHATDDGMIIEGPT---- 377 (455)
T ss_dssp -CCCEETTHHHHHGGG--HHHHHHHHHTSBSCEEEEC-----CHHHHHHHHHHHHHHHTTCCEEEETTEEEECSCC----
T ss_pred -eEEEeCccCCchHHH--HHHHHHHHHhCCCcEEEEccccccccchhHHHHHHHHHHHCCCEEEEECCEEEEECCC----
Confidence 44332 122 33 45788888899999999998887776 45 478999999999999999999999863
Q ss_pred CCCCcceeE-EeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeC
Q 010070 390 GRKHLRAVD-VNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGP 456 (519)
Q Consensus 390 ~~~~l~g~~-v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~ 456 (519)
+|+|.+ +++++|||++|+++++++.++|+++|+|++++. .| |++|++.|+++|++|+...
T Consensus 378 ---~l~g~~~v~s~~DhR~amal~iagL~a~g~~~I~~~~~v~--ks--yp~f~~~l~~Lg~~i~~~~ 438 (455)
T 3rmt_A 378 ---PLKGGVTVSSHGDHRIGMAMAIAALLAEKPVTVEGTEAIA--VS--YPSFFDHLDRLKSEAENLY 438 (455)
T ss_dssp ---CCBCSSEEECTTCHHHHHHHHHHHTTCBSCEEEECTHHHH--HH--CTTHHHHHHHHHHHHHHHC
T ss_pred ---CCCCCceecCCCCHHHHHHHHHHHHhCCCCEEEeCcceec--Cc--chhHHHHHHHcccceEEcc
Confidence 488888 999999999999999999999999999999873 23 9999999999999997643
No 14
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=100.00 E-value=8e-32 Score=285.55 Aligned_cols=332 Identities=21% Similarity=0.230 Sum_probs=246.3
Q ss_pred eEEEccCCceeEEEEecCChhHHHH----HHH-HHH-hcCCceEEec--CCCChhHHHHHHHHHHcCCEEEEcCCcceEE
Q 010070 79 EIVLQPIREISGTVTLPGSKSLSNR----ILL-LAA-LSEGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAI 150 (519)
Q Consensus 79 ~~~i~p~~~l~G~i~~pgsKs~s~R----~l~-~Aa-La~g~~~i~n--~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~ 150 (519)
.+.|.+.. +. ....|...-.+.| ++. +++ +..+.+.+.| .+..||+..++++|+++|++|+.+++ .+.
T Consensus 95 ~~~i~~~~-~~-~~~~~~~~~~~~Ras~l~l~~l~a~~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~g--~~~ 170 (454)
T 3r38_A 95 EVTVDATG-EI-TSDAPFEYVRKMRASIVVMGPLLARTGSARVALPGGCAIGSRPVDLHLKGFEAMGAVVKIENG--YIE 170 (454)
T ss_dssp EEEEECCS-CC-CCEECSHHHHHCGGGGGGHHHHHHHHSEEEEECCCCCSSSSCCSHHHHHHHHHTTCEEEEETT--EEE
T ss_pred EEEEECCC-CC-CCcCChhHhhccchHHHHHHHHHhCCCCeEEEeCCCcccccCCHHHHHHHHHHCCCEEEecCC--EEE
Confidence 45565531 11 1344544345667 332 233 3334678887 46789999999999999999998654 456
Q ss_pred EEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCc
Q 010070 151 VEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNC 230 (519)
Q Consensus 151 I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~ 230 (519)
+.+. .+... ...++..+++.+.|+|++++.+ ++.++|.+. ..++++.+++++|++||++|+.. +.
T Consensus 171 i~~~--~l~g~-----~~~l~~~S~q~~s~lLlAa~la---~G~t~I~~~--~~~p~i~~t~~~L~~~Ga~I~~~---~~ 235 (454)
T 3r38_A 171 ATAE--KLVGA-----KVYLDFPSVGATQNIMMAATLA---EGTTVIENV--AREPEIVDLANFLNQMGARVIGA---GT 235 (454)
T ss_dssp EECS--SCBCC-----EEECSSCCHHHHHHHHHHHTTS---BSEEEEESC--CCCHHHHHHHHHHHHTTCCEECT---TS
T ss_pred EEEc--CccCc-----EEEecCCCHHHHHHHHHHHhcC---CCcEEEEcC--CCCcHHHHHHHHHHHCCCCEEEC---CC
Confidence 6653 23332 3345555667788999987654 456777774 34666777799999999999853 23
Q ss_pred CcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEE
Q 010070 231 PPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFI 310 (519)
Q Consensus 231 ~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I 310 (519)
.+++|+|.+.+.+.++.+++|+|+. +++++|+++++|+++|++.. ..+++.++++|++||++|+..++ .++|
T Consensus 236 ~~i~I~g~~~l~~~~~~v~~D~s~A--~~~l~aaal~gg~v~i~g~~----~~~~~~i~~~L~~mGa~i~~~~~--~i~V 307 (454)
T 3r38_A 236 EVIRIEGVKELTATEHSIIPDRIEA--GTFMIAAAITGGNVLIEDAV----PEHISSLIAKLEEMGVQIIEEEN--GIRV 307 (454)
T ss_dssp SEEEEECCSCEECCEEECCBCHHHH--HHHHHHHHHTTCEEEEESCC----GGGGHHHHHHHHHTTCEEEEC----CEEE
T ss_pred eEEEEecCccccccccccCCChhHH--HHHHHHHHHcCCcEEEcCCC----chHHHHHHHHHHHCCCEEEecCC--eEEE
Confidence 3699999767888899999998875 46777777888888888542 34578899999999999998765 5889
Q ss_pred ecCCcccCCccccc------cCChhhHHHHHHHHHhcCCeEEEE-ccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeC
Q 010070 311 QGGQKYKSPGNAFV------EGDASSASYFVAGAAVTGGTVTVE-GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTG 383 (519)
Q Consensus 311 ~g~~~l~~~~~~~i------~~D~~~a~~~la~aa~~~g~v~i~-g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g 383 (519)
++.++++ +.++.. |.|+.+ .++++++++.|+.+|. ++..++++ ..++|++||++|++.++.++|+|
T Consensus 308 ~g~~~L~-g~~i~~~~~p~~p~D~~~--~l~~laa~A~G~t~i~e~i~~~R~~----~~~~L~~mGa~i~~~~d~l~I~G 380 (454)
T 3r38_A 308 IGPDKLK-AVDVKTMPHPGFPTDMQS--QMMVIQMLSEGTSIMTETVFENRFM----HVEEMRRMNADMKIEGHSVIISG 380 (454)
T ss_dssp ECCSSCC-CCCEEBCSTTSBCGGGHH--HHHHHHHHSSSEEEEECSSCTTCCT----THHHHHHTTCCEEEETTEEEEEC
T ss_pred EECCCcc-ceEEecccCCCCcccHHH--HHHHHHHhcCCCEEEEcCccccHHH----HHHHHHhCCCEEEEECCEEEEeC
Confidence 8865676 566542 237765 6677777888988888 55555554 36889999999999999999998
Q ss_pred CCCCCCCCCCcceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeC
Q 010070 384 PPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGP 456 (519)
Q Consensus 384 ~~~~~~~~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~ 456 (519)
.. +++|.+++. .|||.+|+++++++.++|+++|.|+.++. .| |+.|++.|++||++|++.+
T Consensus 381 ~~-------~l~g~~v~~-~DhR~Ama~~vaal~a~G~~~I~~~~~v~--~s--~p~f~~~L~~lGa~I~~~~ 441 (454)
T 3r38_A 381 PA-------KLQGAEVAA-TDLRAAAALILAGLVADGYTQVTELKYLD--RG--YNNFHGKLQALGADVERVD 441 (454)
T ss_dssp SC-------CCBCCEEEC-CSHHHHHHHHHHHHHSBSEEEEECTHHHH--TT--CSSHHHHHHHTTCEEEEEC
T ss_pred CC-------CceeeEEec-CCHHHHHHHHHHHHhCCCcEEEeCCcccc--CC--hhHHHHHHHhCCCEEEEec
Confidence 63 588999998 79999999999999999999999998763 12 7899999999999998754
No 15
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=99.98 E-value=5.1e-31 Score=278.88 Aligned_cols=322 Identities=19% Similarity=0.229 Sum_probs=244.5
Q ss_pred eCCchhhhhHHHHHHHHc-CCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCC-CCCceEEEEc
Q 010070 172 LGNAGTAMRPLTAAVTAA-GGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKG-GLPGGKVKLS 249 (519)
Q Consensus 172 ~g~sgt~~r~L~a~~~~~-~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~-~l~~~~i~l~ 249 (519)
.|+-..+.|+|++++++. ++.++++|+|. +..||+..++++|++||++|+.+ + + +++|+|.+ .+.+..+.+.
T Consensus 20 pgsKs~s~R~l~~aaLa~~~~~g~~~i~~~--l~~~D~~~~~~~L~~lGa~i~~~-~-~--~l~I~g~~~~l~~~~i~~g 93 (450)
T 2o0b_A 20 PGSKSQTNRALVLAALAAAQGRGASTISGA--LRSRDTELMLDALQTLGLRVDGV-G-S--ELTVSGRIEPGPGARVDCG 93 (450)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCCCEEEETC--CCSHHHHHHHHHHHHTTCEEECS-S-S--CEEEESCCCCCTTCEEECT
T ss_pred cCcHHHHHHHHHHHHhcCCCCCCeEEEecC--CCchHHHHHHHHHHHcCCEEEEe-C-C--EEEEECCCCCcCceeeeec
Confidence 355556789887665552 01167889997 77999999999999999999852 2 2 79999853 4666666663
Q ss_pred CC-CCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccCCh
Q 010070 250 GK-LSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDA 328 (519)
Q Consensus 250 gd-~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~D~ 328 (519)
-+ -+.||+++++ + +..+.+.+.......++| ++.+++.|++||++|+.+ ...++|+|.++|+ +.++.+++|+
T Consensus 94 ~sgts~R~l~~ll--a-~~~~~~~l~G~~~l~~RP-i~~~~~~L~~lGa~i~~~--~~p~~i~g~~~l~-g~~i~i~~d~ 166 (450)
T 2o0b_A 94 LAGTVLRFVPPLA--A-LGSVPVTFDGDQQARGRP-IAPLLDALRELGVAVDGT--GLPFRVRGNGSLA-GGTVAIDASA 166 (450)
T ss_dssp TCHHHHHHHHHHH--T-TSSSEEEEECCGGGGGSC-CHHHHHHHHHTTCEEECS--SSSEEEECCSCCC-CEEEEECCTT
T ss_pred cchhHHHHHHHHH--h-cCCceEEEeCCCcCCCCC-HHHHHHHHHHCCCEEEcC--ceeEEEEecCCCc-CcEEEcCCCC
Confidence 22 3557766666 2 456677766433355677 799999999999999753 2478999855676 7789999998
Q ss_pred hh---HHHHHHHHHhcCCeEEEEccCC-CCCcch-hHHHHHHHHcCCEEEEeC-CeEEEeCCCCCCCCCCCcceeEEeC-
Q 010070 329 SS---ASYFVAGAAVTGGTVTVEGCGT-SSLQGD-VKFAEVLEKMGAKVTWTE-NSVTVTGPPRDPYGRKHLRAVDVNM- 401 (519)
Q Consensus 329 ~~---a~~~la~aa~~~g~v~i~g~~~-~~~~~d-~~~~~~L~~mGa~v~~~~-~~i~i~g~~~~~~~~~~l~g~~v~~- 401 (519)
|+ +++|++ |+++.+.++|++.+. ...+.+ ...++.|++||++|+..+ +.++|.|. .++|.+++.
T Consensus 167 Ssq~~salllA-A~~~~g~~~I~~~~~~~~s~p~i~~t~~~L~~~Ga~I~~~~~~~i~I~g~--------~l~g~~~~v~ 237 (450)
T 2o0b_A 167 SSQFVSGLLLS-AASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTPNRWQVRPG--------PVAARRWDIE 237 (450)
T ss_dssp CTHHHHHHHHH-GGGSTTCEEEEECSSCCCCHHHHHHHHHHHHHTTCCEECCSTTEEEECCC--------CCCCCCEECC
T ss_pred CHHHHHHHHHH-HHHcCCCeEEEeCCCCcCCCcHHHHHHHHHHHCCCeEEecCCcEEEEECC--------CCcCceEEcC
Confidence 87 444444 444556666665432 223444 457899999999998554 57888763 477888877
Q ss_pred CCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCCCccccEEecCccHHHH
Q 010070 402 NKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMA 481 (519)
Q Consensus 402 ~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~~l~~~~i~~~~Dhr~a 481 (519)
.|.++..+.+++ ++.++|+++|+|+...+.+|++| +++.|++||++|++.+|.++|++...+++.++++++||+++
T Consensus 238 ~D~s~A~~~laa-aa~~~g~v~i~~v~~~~~q~~~~---i~~~L~~mGa~i~~~~d~i~v~~~~~l~g~~i~~~~~~D~~ 313 (450)
T 2o0b_A 238 PDLTNAVAFLSA-AVVSGGTVRITGWPRVSVQPADH---ILAILRQLNAVVIHADSSLEVRGPTGYDGFDVDLRAVGELT 313 (450)
T ss_dssp BCHHHHHHHHHH-HHHHTCEEEETTCCSSCSSCHHH---HHHHHHHTTCEEEEETTEEEEECCSCCCCCEEECTTCGGGH
T ss_pred CCHHHHHHHHHH-HHhcCCeEEECCCCcccccchHH---HHHHHHHcCCeEEEcCCEEEEecCCCcceeEEeCCCCHHHH
Confidence 444466666665 55679999999999888888765 67999999999999999999998666999999999999999
Q ss_pred HHHHHHHc-CC--CCEEEeCCccccccc----ccHHHHHHhcccC
Q 010070 482 MAFSLAAC-AD--VPVTIKDPSCTRKTF----PDYFDVLDSVTKR 519 (519)
Q Consensus 482 ma~~laa~-~~--~~v~I~n~~~v~ks~----p~F~~~L~~lg~~ 519 (519)
|.|+++++ +. ++++|+|+++++..+ +.|++.|++||++
T Consensus 314 p~lavla~~a~~~G~s~I~~~~~lrvkEtdRi~~~~~eL~klGa~ 358 (450)
T 2o0b_A 314 PSVAALAALASPGSVSRLSGIAHLRGHETDRLAALSTEINRLGGT 358 (450)
T ss_dssp HHHHHHHHTSSTTCEEEEESCGGGGGSSSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhCCCCCcEEEECCcccccccchhHHHHHHHHHHCCCe
Confidence 99998885 78 889999999998888 9999999999974
No 16
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=99.97 E-value=7.1e-30 Score=269.15 Aligned_cols=315 Identities=17% Similarity=0.174 Sum_probs=234.1
Q ss_pred ChhHHHHHHHHHHh-cCCceEEecCC--CChhHHHHHHHHHHcCCEEEEc--CCcceEEEEcCCCCccccccCCCceEEE
Q 010070 97 SKSLSNRILLLAAL-SEGTTVVDNLL--SSEDIHHMLDALKKLGLNVEED--FAMKRAIVEGCGGLFPLAKQQTGEIELF 171 (519)
Q Consensus 97 sKs~s~R~l~~AaL-a~g~~~i~n~~--~~~dv~~~l~aL~~lGa~v~~~--~~~~~l~I~g~~g~~~~~~~~~~~~~l~ 171 (519)
....+.|+++.++. ..+.+++.|.. ..||+..++++|+++|++|++. ++..+++|.+.+ .+... .+.
T Consensus 90 ~sgt~~rll~a~la~~~~~v~l~G~~~l~~Rpi~~~l~~L~~mGa~i~~~~~~g~~pi~i~~~~-~L~g~-------~i~ 161 (427)
T 1rf6_A 90 NSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTK-NLRPI-------HYE 161 (427)
T ss_dssp TCHHHHHHHHHHGGGCSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEEEEEEECCT-TCCCC-------EEE
T ss_pred ccchHHHHHHHHHhcCCcEEEEeCCCccCCCCHHHHHHHHHHCCCEEEEEcCCCcceEEEeccC-CCCce-------EEE
Confidence 33466676554442 23578888753 6799999999999999999986 333468888731 13321 233
Q ss_pred eCC-c-hhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEEEEc
Q 010070 172 LGN-A-GTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (519)
Q Consensus 172 ~g~-s-gt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l~ 249 (519)
..+ | ..+..+|++++.+ ++.+++... ..+||+.. +.|++||++|+..++ .++|+|.+++++.++.++
T Consensus 162 ~~~~ssq~~s~lllaA~~a---~G~t~I~~~--~~~~~~i~--~~L~~~Ga~i~~~~~----~i~I~g~~~l~g~~~~v~ 230 (427)
T 1rf6_A 162 LPIASAQVKSALMFAALQA---KGESVIIEK--EYTRNHTE--DMLQQFGGHLSVDGK----KITVQGPQKLTGQKVVVP 230 (427)
T ss_dssp CSSCCHHHHHHHHHHHTTS---SEEEEEECS--SCCCCHHH--HHHHHTTCCCEEETT----EEEEEECCCCBCCEEECC
T ss_pred eCCCCHHHHHHHHHHHHhc---CCCeEEEec--cCCHHHHH--HHHHHCCCCEEecCC----EEEEcCCcccCCCeEEcC
Confidence 322 2 3333455555443 456655554 45788877 999999999987542 489999767988899999
Q ss_pred CCCCHHHHHHHHHHhhcCCCe-EEEEEcCCCCChhHHHHHHHHHHHcCCEEEEe----C-ceeEEEEecCCcccCCcccc
Q 010070 250 GKLSSQYLTALLMAAPLALGN-VEIEIIDKLISVPYVEMTLKLMERFGVFVEHS----D-SWDRFFIQGGQKYKSPGNAF 323 (519)
Q Consensus 250 gd~Ssq~~salllAA~la~g~-~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~----~-~~~~i~I~g~~~l~~~~~~~ 323 (519)
+|+|+. ++|++|+++++|. ++|++.....+.++ .++.|++||++|+.. + ....++|++. +++ +.++.
T Consensus 231 ~D~~~A--~~~~~Aa~~~~g~~v~i~~~~~~~~~~~---~~~~L~~mGa~i~~~~~~~~~~~~~i~v~~~-~l~-~~~i~ 303 (427)
T 1rf6_A 231 GDISSA--AFWLVAGLIAPNSRLVLQNVGINETRTG---IIDVIRAMGGKLEITEIDPVAKSATLIVESS-DLK-GTEIC 303 (427)
T ss_dssp BCHHHH--HHHHHHHHHSTTEEEEEEEEECCTTTCH---HHHHHHHTTCEEEEEEEETTTTEEEEEEECC-CCB-CCEEC
T ss_pred CCHHHH--HHHHHHHHhCCCCEEEECCCCCCCChhH---HHHHHHHcCCcEEEccccCCCCcceEEEeCC-CCC-cEEec
Confidence 998886 6778888888887 89987652234443 789999999999874 2 0025778764 455 44332
Q ss_pred --ccC---ChhhHHHHHHHHHhcCCeEEEEccCCCCCc-ch--hHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcc
Q 010070 324 --VEG---DASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLR 395 (519)
Q Consensus 324 --i~~---D~~~a~~~la~aa~~~g~v~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~ 395 (519)
..| |. ...++++++++.|+.+|+|+...+++ +| ..++++|++||++++.++|.++|+|.. .++
T Consensus 304 ~~~~p~~~D~--~p~l~~la~~a~G~s~i~~~~~lr~kEsdR~~~~~~eL~~lGa~i~~~~d~~~I~g~~-------~l~ 374 (427)
T 1rf6_A 304 GALIPRLIDE--LPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKS-------ALH 374 (427)
T ss_dssp TTSGGGTGGG--HHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEETTEEEEEECC-------CCC
T ss_pred cccCCChHHH--HHHHHHHHHhCCCcEEEEcccccccchhHHHHHHHHHHHHCCCEEEEECCEEEEeCCC-------CCC
Confidence 223 55 44788889999999999999887776 34 458999999999999999999999852 488
Q ss_pred eeEEeCCCCCcHHHHHHHHH-HcCCCCEEEecccccccccchhHHHHHHHHHHcCC
Q 010070 396 AVDVNMNKMPDVAMTLAVVA-LFADGPTAIRDVASWRVKETERMIAICTELRKLGA 450 (519)
Q Consensus 396 g~~v~~~~~pd~~~~Lavaa-~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa 450 (519)
|.++++++|||++|++++++ +.++|+++|+|++++. .| |++|++.|+++|+
T Consensus 375 g~~v~s~~DhR~ama~~ia~~l~a~g~~~I~~~~~v~--~s--yp~f~~~l~~lg~ 426 (427)
T 1rf6_A 375 GARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAIN--TS--YPSFFDDLESLIH 426 (427)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTCSSSCEEEETGGGGG--GT--CTTHHHHHHHHSC
T ss_pred CCeEECCccHHHHHHHHHHHHhcCCCcEEEcccCccc--Cc--chhHHHHHHHhhC
Confidence 89999999999999999999 9999999999999874 23 9999999999986
No 17
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=99.97 E-value=2.1e-30 Score=276.07 Aligned_cols=331 Identities=19% Similarity=0.200 Sum_probs=229.1
Q ss_pred HHHHHHH-HHHh-cCCceEEec--CCC----ChhHHHHHHHHHHcCCEEEEcC-CcceEEEEcCCCCccccccCCCceEE
Q 010070 100 LSNRILL-LAAL-SEGTTVVDN--LLS----SEDIHHMLDALKKLGLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIEL 170 (519)
Q Consensus 100 ~s~R~l~-~AaL-a~g~~~i~n--~~~----~~dv~~~l~aL~~lGa~v~~~~-~~~~l~I~g~~g~~~~~~~~~~~~~l 170 (519)
.+.|+|. +++. ..+.+++.+ .+. .||+..++++|++||++|++.+ +..++++ . .+... ...+
T Consensus 107 ts~~~l~~l~a~~~~~~~~l~G~~~l~~~~~~RPi~~~~~~L~~lGa~i~~~~~g~~p~~~--~--~l~g~-----~i~l 177 (479)
T 4fqd_A 107 GSLYLLPALVSRNGVARLSASGGCPIGEGPRGRPDEHLLDVMGRFGVTTRLTADGSVDLTA--Q--RLTPC-----TIDM 177 (479)
T ss_dssp GGGGGHHHHHHHTSEEEECC------------CCCHHHHHHHHTTTCEEEECTTSCEEEEC--S--SCCCC-----EEEG
T ss_pred hhHHHHHHHHhcCCCeEEEEeCCcccccCCCCCChHHHHHHHHHCCCEEEeccCCceEEEE--c--Ccccc-----EEEe
Confidence 3456553 2332 334667776 345 8999999999999999999864 4445543 1 23222 1122
Q ss_pred -EeCC----------chhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcC-
Q 010070 171 -FLGN----------AGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGK- 238 (519)
Q Consensus 171 -~~g~----------sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~- 238 (519)
+... .+.+-|+|++++++ ++.++|.+. ..++.+.+++++|++||++|+..+. + .++|+|.
T Consensus 178 ~~~sSSSQfiS~lq~v~~t~~lLlaa~la---~G~t~I~~~--~~~pdi~~Tl~~L~~~Ga~I~~~~~-~--~i~I~g~g 249 (479)
T 4fqd_A 178 LDYTRNKALMSGPCYSGAVKTALLMGAVT---HGTTTLQHP--YLKPDVTDMVTVLRDLGADIEFAGP-E--TWVIHGRG 249 (479)
T ss_dssp GGGCSBTTTTBCTTHHHHHHHHHHHHHTS---EEEEEEESC--CCSHHHHHHHHHHHHHTCCEEEEET-T--EEEEEEEC
T ss_pred ccccchHHhhccchhHHHHHHHHHHHHhC---CCcEEEecC--CCChHHHHHHHHHHHCCCeEEEcCC-C--EEEEeCCC
Confidence 1221 24556788877665 466777764 3466666679999999999997532 2 4899986
Q ss_pred --CCCCceEEEEcCCCCHHHHHHHHHHhhc-CCCeEEEEEcCCCCC-hhHHHHHHHHHHHcCCEEEEeCceeEEEEec-C
Q 010070 239 --GGLPGGKVKLSGKLSSQYLTALLMAAPL-ALGNVEIEIIDKLIS-VPYVEMTLKLMERFGVFVEHSDSWDRFFIQG-G 313 (519)
Q Consensus 239 --~~l~~~~i~l~gd~Ssq~~salllAA~l-a~g~~~I~~~~~~~s-~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g-~ 313 (519)
+.+.+.++.+++|+|+. +.||+|+++ .+++++|++.+. .+ ...+..++++|++||++|+..++ .++|++ .
T Consensus 250 ~~~~l~~~~~~V~~D~s~A--g~fl~aaal~~gg~v~l~g~~~-~s~~~~~~~i~~~L~~mGa~i~~~~~--~i~v~~~~ 324 (479)
T 4fqd_A 250 PESLHRPVDVTLIPDLIEV--VTWICAGVLLADEPLRITGPGI-DRAVHALAPEFDLLDRMGVRVDVGAD--EVTAHPLT 324 (479)
T ss_dssp GGGCCCCEEEECCBCHHHH--HHHHHHHHHHBSSCEEEECTTH-HHHHHHTHHHHHHHHHHTCCEEECSS--EEEECCCS
T ss_pred CCCccCCCceEeCCChHhH--HHHHHHHHHcCCCeEEEeCCCC-ccccCchHHHHHHHHHCCCEEEEcCC--eEEEEecC
Confidence 57889999999999886 346666666 678999986541 12 22457789999999999998765 688987 4
Q ss_pred CcccCCccccc-----cCChhhHHHHHHHHHhcCCeEEEE-ccCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCC
Q 010070 314 QKYKSPGNAFV-----EGDASSASYFVAGAAVTGGTVTVE-GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRD 387 (519)
Q Consensus 314 ~~l~~~~~~~i-----~~D~~~a~~~la~aa~~~g~v~i~-g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~ 387 (519)
.+++ +.++.. ++|..+ .++++++++.|+++|+ ++..+++ .+.++|++||++++++++.++|.|..
T Consensus 325 ~~L~-g~~i~~~~~~~~~D~~p--~l~~~a~~A~G~t~I~e~i~e~R~----~~~~eL~~lGa~i~~~~d~~~I~g~~-- 395 (479)
T 4fqd_A 325 KPLR-PVEFTAMSRGVFSDSQP--FLALLGAYAEGPTYIREAVWEHRF----GFAPELEALGIRTAVDDTVLRVDGPC-- 395 (479)
T ss_dssp SCBC-CCEEEECTTSBCTTTHH--HHHHHHTTBSEEEEEEESSSSSCC----TTHHHHHHHTCCEEEETTEEEEEESC--
T ss_pred CCCC-CeEEecCCCCCCHHHHH--HHHHHHHhCCCcEEEEcCCcccHH----HHHHHHHHCCCeEEEECCEEEEeCCC--
Confidence 4565 555543 567754 6777778889999995 5444443 47899999999999999999999863
Q ss_pred CCCCCCc--ceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEeCCeEEEcCCC
Q 010070 388 PYGRKHL--RAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPE 465 (519)
Q Consensus 388 ~~~~~~l--~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~~d~l~I~g~~ 465 (519)
.+ ++.+|+. .|||++|+++++++.++|+++|+|++++. .| |++|++.|++||++|+..++.. +.| +
T Consensus 396 -----~l~~~g~~V~~-~DhR~Ama~~vaal~~~g~i~I~~~~~v~--ks--yp~f~~~L~~lGa~I~~~~~~~-~~~-~ 463 (479)
T 4fqd_A 396 -----PPHRPGTDLRA-TDLRAAAVLLLAALAVPGRTTLRNHHHLA--RG--YRDLVEDLVKLGADIRHTTAPD-VRP-K 463 (479)
T ss_dssp -----CCCCCSEEEEC-CSHHHHHHHHHHHTTSSSEEEEECGGGGG--GT--CSCHHHHHHHTTCEEEEEECC-------
T ss_pred -----cccCCCcEEeC-CCHHHHHHHHHHHHhCCCeEEEcCccccc--CC--HHHHHHHHHhCCCEEEEecCce-ecC-C
Confidence 46 7889998 79999999999999999999999998763 33 8899999999999999876655 333 3
Q ss_pred CccccEEe
Q 010070 466 KLKVAAID 473 (519)
Q Consensus 466 ~l~~~~i~ 473 (519)
+..++.++
T Consensus 464 ~~~~~~~~ 471 (479)
T 4fqd_A 464 PPAGAGVD 471 (479)
T ss_dssp --------
T ss_pred CccccCCC
Confidence 44454444
No 18
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=99.97 E-value=4.7e-29 Score=262.44 Aligned_cols=329 Identities=18% Similarity=0.208 Sum_probs=234.7
Q ss_pred eEEEccCCceeEEEEecCChhHHHH---HHHHHHhcC-C--ceEEec--CCCChhHHHHHHHHHHcCCEEEEcCCcceEE
Q 010070 79 EIVLQPIREISGTVTLPGSKSLSNR---ILLLAALSE-G--TTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAI 150 (519)
Q Consensus 79 ~~~i~p~~~l~G~i~~pgsKs~s~R---~l~~AaLa~-g--~~~i~n--~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~ 150 (519)
.++|.+.. +. ...+|++-....| ++++++++. + .+.+.| .+..||++.++++|+++|++|+++++ .+.
T Consensus 69 ~~~I~~~~-~~-~~~~~~d~~~~~ras~~l~~alla~~~~~~v~l~G~~~l~~rp~~~~~~~L~~mGa~i~~~~g--~~~ 144 (419)
T 1ejd_A 69 SVWIDASN-VN-NFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEG--YVK 144 (419)
T ss_dssp SEEEECTT-CC-CCEECHHHHTTCGGGGGGHHHHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETT--EEE
T ss_pred eEEEecCC-CC-CCcCchHHhhhhhHHHHHHHHHhhcCCceEEEecCCcccCCCchHHHHHHHHHCCCEEEEcCC--EEE
Confidence 45665532 21 3445544322222 334444442 3 455765 35689999999999999999998654 455
Q ss_pred EEcCCCCccccccCCCceEEEeC-Cc-hhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHhCCCEEEEeCC
Q 010070 151 VEGCGGLFPLAKQQTGEIELFLG-NA-GTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILG 227 (519)
Q Consensus 151 I~g~~g~~~~~~~~~~~~~l~~g-~s-gt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp~~~l-~~~L~~lGa~v~~~~~ 227 (519)
+.+.+ .+... .+... .| ..+..+|++++.+ ++.++|.+. .++|+.++ ++.|++||++|+...
T Consensus 145 v~~~~-~L~g~-------~i~~~~~s~~~~~~ll~aa~~a---~G~t~I~~~---~~e~~i~~t~~~L~~~Ga~i~~~~- 209 (419)
T 1ejd_A 145 ASVNG-RLKGA-------HIVMDKVSVGATVTIMSAATLA---EGTTIIENA---AREPEIVDTANFLVALGAKISGQG- 209 (419)
T ss_dssp EECSS-SCBCC-------EEECSSCCHHHHHHHHHHHTTS---BSEEEEETC---CCCHHHHHHHHHHHHTTCEEECTT-
T ss_pred EEEcC-Cccce-------EEecCCCCHHHHHHHHHHHhcC---CCcEEEEeC---CCCchHHHHHHHHHHCCCEEEEcc-
Confidence 65432 23321 23332 22 3344455555443 455667764 24567665 999999999998532
Q ss_pred CCcCcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeE
Q 010070 228 TNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 307 (519)
Q Consensus 228 ~~~~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~ 307 (519)
.+ .++|+|.+++++.++.+++|+|++ ++|++|+++++++++|++.. . .. ....++.|++||++|+..++ .
T Consensus 210 ~~--~i~I~g~~~l~g~~~~v~~D~s~A--~~~~~aa~~~~g~v~i~~~~-~--~~-~~~~~~~L~~mGa~i~~~~~--~ 279 (419)
T 1ejd_A 210 TD--RITIEGVERLGGGVYRVLPDRIET--GTFLVAAAISGGKIVCRNAQ-P--DT-LDAVLAKLREAGADIETGED--W 279 (419)
T ss_dssp SS--EEEEECCSCBCCEEEECCBCHHHH--HHHHHHHHTTTCEEEEESCC-G--GG-CHHHHHHHHHTTCEEEECSS--E
T ss_pred CC--EEEEeCCCcccccEEEeeCCHHHH--HHHHHHHHhcCCeEEEeCcC-c--cc-HHHHHHHHHHCCCEEEEcCC--E
Confidence 12 488998767999999999998876 56777777778889998765 2 22 24688999999999998765 6
Q ss_pred EEEec-CCcccCCccccc---cC---ChhhHHHHHHHHHhcCCeEEEE-ccCCCCCcchhHHHHHHHHcCCEEEEeCCeE
Q 010070 308 FFIQG-GQKYKSPGNAFV---EG---DASSASYFVAGAAVTGGTVTVE-GCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379 (519)
Q Consensus 308 i~I~g-~~~l~~~~~~~i---~~---D~~~a~~~la~aa~~~g~v~i~-g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i 379 (519)
++|++ ..+++ +.++.. |+ |.. ..++++++++.|+.+|+ ++..++++ ..++|++||++++..+|.+
T Consensus 280 i~v~~~~~~l~-~~~i~~~~~p~~~~D~~--p~la~la~~a~g~s~i~~~i~~~R~~----~~~eL~~lG~~i~~~~d~~ 352 (419)
T 1ejd_A 280 ISLDMHGKRPK-AVTVRTAPHPAFPTDMQ--AQFTLLNLVAEGTGVITETIFENRFM----HVPELIRMGAHAEIESNTV 352 (419)
T ss_dssp EEEECTTCCCB-CCCEECCSTTSCCGGGH--HHHHHHHHTSBSEEEEECCSCSSCCT----HHHHHHHTTCEEEEETTEE
T ss_pred EEEEecCCCcc-ceEEeCCCCCCCcHHHH--HHHHHHHHhCCCcEEEEccchHhHHH----HHHHHHHCCCEEEEECCEE
Confidence 88876 23455 444432 11 554 47888888999999999 68777775 5799999999999999999
Q ss_pred EEeCCCCCCCCCCCcceeEEeCCCCCcHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEe
Q 010070 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEG 455 (519)
Q Consensus 380 ~i~g~~~~~~~~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~ 455 (519)
.|+|.. +++|.+++. .|||++|+++++++.++|+++|+|++++. .| |++|++.|++||++|+..
T Consensus 353 ~I~g~~-------~l~g~~v~~-~DhR~ama~~ia~l~~~g~~~I~~~~~v~--~s--yp~f~~~l~~lg~~i~~~ 416 (419)
T 1ejd_A 353 ICHGVE-------KLSGAQVMA-TDLRASASLVLAGCIAEGTTVVDRIYHID--RG--YERIEDKLRALGANIERV 416 (419)
T ss_dssp EEECCS-------CCBCCEECC-SSHHHHHHHHHHHHHSBEEEEECCTHHHH--HH--SSSHHHHHHTTTCEEEEE
T ss_pred EEeCCC-------CCcCCEEeC-CcHHHHHHHHHHHhcCCCCEEECCcCeee--Cc--CccHHHHHHHhCCEEEEe
Confidence 999852 478889988 69999999999999999999999999873 23 899999999999998753
No 19
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=99.97 E-value=2.4e-29 Score=264.92 Aligned_cols=297 Identities=19% Similarity=0.199 Sum_probs=222.8
Q ss_pred CceEEec--CCCChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcC
Q 010070 113 GTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAG 190 (519)
Q Consensus 113 g~~~i~n--~~~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~ 190 (519)
+.+.+.| .+..||+..++++|++||++|+++++ .+.++.. .+... ...+...++..+.++|++++++
T Consensus 116 ~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~g--~~~i~~~--~l~g~-----~i~~~~~S~~~~s~lllaa~la-- 184 (425)
T 2yvw_A 116 AVVGLPGGCSIGARPIDQHLKFFKEAGADVEVREG--YVYVNLK--EKRRV-----HFKFDLVTVTGTENALLYLASV-- 184 (425)
T ss_dssp EEEECCCCBTTBCCCCHHHHHHHHHTTCEEEEETT--EEEEECS--SCCCC-----EEECSSCCHHHHHHHHHHHTTC--
T ss_pred EEEEECCCcccccCCHHHHHHHHHHCCCEEEecCC--EEEEEec--Cccce-----EEecccccHHHHHHHHHHHHhc--
Confidence 4777887 46789999999999999999987544 3445432 23321 2233334566677888887765
Q ss_pred CCeEEEEcCCCCCCCCChHHH-HHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCC
Q 010070 191 GNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALG 269 (519)
Q Consensus 191 ~~~~~~l~G~~~l~~Rp~~~l-~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g 269 (519)
++.+++.+. ..+|+.++ +++|++||++|+.++. + .+ |+|.+.+++.++.+++|+|+. +.|++|+++++|
T Consensus 185 -~g~t~i~~~---~~~~~i~~t~~~L~~~Ga~i~~~~~-~--~i-I~g~~~l~~~~~~v~~D~s~A--~t~l~aaal~~g 254 (425)
T 2yvw_A 185 -PEESILENI---ALEPEVMDLIEVLKKMGAHVKVEGR-S--AY-VKGSENLKGFTHSVIPDRIEA--GTFMVGAVLTDG 254 (425)
T ss_dssp -SSEEEEESC---CCCHHHHHHHHHHHHTTCEEEEETT-E--EE-EECCSSCCCCEEECCBCHHHH--HHHHHHHHHTTC
T ss_pred -CCCEEEeCC---CCCchHHHHHHHHHHCCCeEEEcCC-E--EE-EeCCCccCCccccccCchhHH--HHHHHHHHhCCC
Confidence 345667763 24555554 9999999999986432 2 36 888667888889999998886 457778888889
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccc------cCChhhHHHHHHHHHhcCC
Q 010070 270 NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFV------EGDASSASYFVAGAAVTGG 343 (519)
Q Consensus 270 ~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i------~~D~~~a~~~la~aa~~~g 343 (519)
+++|++.. .+.+..++++|++||++|+..++ .++|++..+++ +.++.. |.|..+ .|++++++++|
T Consensus 255 ~v~l~g~~----~~~~~~l~~~L~~mGa~i~~~~~--~i~i~~~~~L~-g~~i~~~~~p~~p~d~~~--~~~~aa~~a~G 325 (425)
T 2yvw_A 255 EILLENAR----INHLRAVVEKLKLIGGEVVEENG--NLRVFRKESLR-ACDIETQVYPGFPTDMQA--QFMALLSVAKG 325 (425)
T ss_dssp EEEEESCC----GGGCHHHHHHHHHHTEEEEEETT--EEEEEECSCCB-CCCEEBCSTTSBCHHHHH--HHHHHHTTSBS
T ss_pred cEEEeCCC----chHHHHHHHHHHHCCCEEEEcCC--EEEEEecCCcc-ceEEeCCCCCCCcccHHH--HHHHHHHHCCC
Confidence 98888653 34456789999999999998665 68888744566 555443 125544 67788888999
Q ss_pred eEEEEc-cCCCCCcchhHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcceeEEeCCCCCcHHHHHHHHHHcCCCCE
Q 010070 344 TVTVEG-CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPT 422 (519)
Q Consensus 344 ~v~i~g-~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~v~~~~~pd~~~~Lavaa~~a~G~s 422 (519)
+++|++ +..++ ...++.|++||++|+..++.++|.|.. +++|.++.. .||+.+|+++++++.++|++
T Consensus 326 ~t~I~~~~~e~r----~~~~~~L~~~Ga~i~~~~d~l~I~g~~-------~l~g~~v~~-~D~r~A~~~~~aal~a~g~v 393 (425)
T 2yvw_A 326 KSRIKENIFEHR----FHHAQELNRLGANITVRGNTAYVEGVE-------RLYGSEVYS-TDLRASASLVLAGLVAQGET 393 (425)
T ss_dssp EEEEECSSCTTC----CHHHHHHHTTTCCEEEETTEEEEECCS-------CCBCCEEEC-CCTTTTHHHHHHHHHSBSEE
T ss_pred eEEEEcCcHHHH----HHHHHHHHhCCCEEEEECCEEEEeCCC-------CCcCCeecC-CcHHHHHHHHHHHHhCCCcE
Confidence 999996 43332 346889999999999999999998752 478888877 59999999999999999999
Q ss_pred EEecccccccccchh-HHHHHHHHHHcCCeEEEeC
Q 010070 423 AIRDVASWRVKETER-MIAICTELRKLGATVEEGP 456 (519)
Q Consensus 423 ~I~~~~~~r~kEsdR-~~~~~~~L~klGa~i~~~~ 456 (519)
+|+|+.+. +| |+.|++.|++||++|+...
T Consensus 394 ~I~~~~~~-----~r~~p~f~~~L~~lGa~I~~~~ 423 (425)
T 2yvw_A 394 VVRDVYHL-----DRGYEKLEEKLKKLGADIERVS 423 (425)
T ss_dssp EEECTHHH-----HHHCSSHHHHHHHTTCCEEEEC
T ss_pred EEeCceee-----cCchHHHHHHHHHcCCeEEEec
Confidence 99998763 23 7789999999999998654
No 20
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=99.96 E-value=8.6e-28 Score=254.76 Aligned_cols=266 Identities=20% Similarity=0.208 Sum_probs=205.8
Q ss_pred CcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEE
Q 010070 231 PPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFI 310 (519)
Q Consensus 231 ~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I 310 (519)
.|+.|+|...+ .++++++|++|+++ .++++ |+++.|.++|++. +.+ +|+..|+++|++||++|+.+++ .++|
T Consensus 3 ~pl~i~~~~~l-~G~v~ipgsKs~t~-r~ll~-A~La~g~t~i~n~--~~~-~dv~~~~~~L~~lG~~i~~~~~--~~~I 74 (445)
T 2pqc_A 3 RPATARKSSGL-SGTVRIPGDKSISH-RSFMF-GGLASGETRITGL--LEG-EDVINTGKAMQAMGARIRKEGD--TWII 74 (445)
T ss_dssp CCEEEECCSCC-EEEEECCBCHHHHH-HHHHH-HHHSEEEEEEESC--CCS-HHHHHHHHHHHHTTCEEEEETT--EEEE
T ss_pred ceEEEcCCCcc-eEEEEcCCCHHHHH-HHHHH-HHhcCCcEEEccC--CCC-HHHHHHHHHHHHCCCEEEecCC--EEEE
Confidence 48999986344 67999999999986 55555 5699999999854 334 8999999999999999987765 7889
Q ss_pred ecCC--cccCCccccccCChhhHHHHHHHHHhc-CCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeCCe---EEEeCC
Q 010070 311 QGGQ--KYKSPGNAFVEGDASSASYFVAGAAVT-GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS---VTVTGP 384 (519)
Q Consensus 311 ~g~~--~l~~~~~~~i~~D~~~a~~~la~aa~~-~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~---i~i~g~ 384 (519)
+|.+ .+..|......++..++++|+++++.. ++++++.|......+....+++.|++||++|++.+++ ++|++.
T Consensus 75 ~g~~~~~~~~p~~~~d~~~sgt~~r~l~~~l~~~~~~v~l~G~~~l~~Rp~~~~l~~L~~~Ga~i~~~~~g~~Pi~i~~~ 154 (445)
T 2pqc_A 75 DGVGNGGLLAPEAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPVTLRGP 154 (445)
T ss_dssp EEECTTCCCCCSSCEECTTCHHHHHHHHHHHHTSSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTEEEEEEECC
T ss_pred EccCCCCCCCCCcccchhhhhHHHHHHHHHHhcCCcEEEEECCccCCCCChHHHHHHHHHCCCEEEeccCCcccEEEeCC
Confidence 8753 233222111233445577777766542 4789999876544444468999999999999987644 788763
Q ss_pred CCCCCCCCCcceeEEeCCCCC-cHHHHHHHHHHcCCCCEEEecccccccccchhHHHHHHHHHHcCCeEEEe--C---Ce
Q 010070 385 PRDPYGRKHLRAVDVNMNKMP-DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEG--P---DY 458 (519)
Q Consensus 385 ~~~~~~~~~l~g~~v~~~~~p-d~~~~Lavaa~~a~G~s~I~~~~~~r~kEsdR~~~~~~~L~klGa~i~~~--~---d~ 458 (519)
..++|.+++.+..+ +..+.|+++|++++|+++|.+.. ++.|++ .++|++||++|+++ + +.
T Consensus 155 -------~~l~g~~i~~~~~ssq~~~~lllaa~~a~G~t~I~~~~----~~~~~~---~~~L~~~Ga~I~~~~~~~g~~~ 220 (445)
T 2pqc_A 155 -------KTPTPITYRVPMASAQVKSAVLLAGLNTPGITTVIEPI----MTRDHT---EKMLQGFGANLTVETDADGVRT 220 (445)
T ss_dssp -------SSCCCCEEECSSSCHHHHHHHHHHHHTSSSEEEEEESS----CCCCHH---HHHHHHTTCCEEEEECTTSCEE
T ss_pred -------CCCCCeEEEeCCCCHHHHHHHHHHHhhCCCceEEEEcc----CCHHHH---HHHHHHCCCEEEEecCCCCccE
Confidence 13788888877555 78899999999999999988763 233433 38999999999876 5 68
Q ss_pred EEEcCCCCccccEEecCccHHHHHHHHHHHc-CCCC-EEEeCCcccccccccHHHHHHhcccC
Q 010070 459 CVITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVP-VTIKDPSCTRKTFPDYFDVLDSVTKR 519 (519)
Q Consensus 459 l~I~g~~~l~~~~i~~~~Dhr~ama~~laa~-~~~~-v~I~n~~~v~ks~p~F~~~L~~lg~~ 519 (519)
++|+|.+.+++.++++++|||.|++|++||+ +++. ++|+|.. .++.+++|++.|++||++
T Consensus 221 ~~I~g~~~l~~~~~~v~~D~s~a~~~l~aa~~~~g~~v~i~~~~-~~~~~~~~~~~L~~mGa~ 282 (445)
T 2pqc_A 221 IRLEGRGKLTGQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVL-MNPTRTGLILTLQEMGAD 282 (445)
T ss_dssp EEEETTCCCBCCEEECCBCHHHHHHHHHHHHHSTTCEEEEEEEE-CCGGGCHHHHHHHHHTCE
T ss_pred EEEeCCccccCceeEcCCCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCcchHHHHHHHcCCe
Confidence 9999987899989999999999999999986 5666 9999997 578999999999999974
No 21
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=93.37 E-value=2.6 Score=42.27 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=75.4
Q ss_pred ChhHHHHHHHHHHhcCCceEEecCCCC-------hhHHHHHHHHHHc-CCEEEEcC-CcceEEEEcCCCCccccccCCCc
Q 010070 97 SKSLSNRILLLAALSEGTTVVDNLLSS-------EDIHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGE 167 (519)
Q Consensus 97 sKs~s~R~l~~AaLa~g~~~i~n~~~~-------~dv~~~l~aL~~l-Ga~v~~~~-~~~~l~I~g~~g~~~~~~~~~~~ 167 (519)
...+..-.|++|+|+..+++|+|.-.. +.=...++++.++ |++++-.. +...++.... .+... .
T Consensus 35 GGQ~lR~alaLS~Ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~a~veg~~~GSt~l~f~PG--~i~gg-----~ 107 (358)
T 3tut_A 35 GGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGSQRLLFRPG--TVRGG-----D 107 (358)
T ss_dssp STHHHHHHHHHHHHHCCCEEEESTTTTSSSCSCCHHHHHHHHHHHHHHTCEEECCSTTCSCEEEECC--CCCCC-----E
T ss_pred chHHHHHHHHHHHhhCCCEEEEEecCCCCCccccHHHHHHHHHHHHhhCCEEEEeecCcEEEEEECC--CccCc-----e
Confidence 344555578899999999999996322 2222335555553 78887554 2235666543 12222 4
Q ss_pred eEEEeCCchhhh---hHHHHHHHHcCCCeEEEEcCCCCCC-CCChHHH----HHHHHhCCCEEEE
Q 010070 168 IELFLGNAGTAM---RPLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDC 224 (519)
Q Consensus 168 ~~l~~g~sgt~~---r~L~a~~~~~~~~~~~~l~G~~~l~-~Rp~~~l----~~~L~~lGa~v~~ 224 (519)
..++++.+|+.. +.+++++..+..+.++++.|+-.-. +.+++.+ +-.|++||++++.
T Consensus 108 ~~~d~~tagSi~l~lq~lLp~~lFa~~p~~l~l~GgTn~~~~psvDy~~~v~lP~l~~fG~~~~l 172 (358)
T 3tut_A 108 YRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQT 172 (358)
T ss_dssp EEEECSSSCBHHHHHHHHHHHHTTSSSCEEEEEEEBSCCTTSCCHHHHHHTHHHHHHHHTCCEEE
T ss_pred EEEECCCcccHHHHHHHHHHHHHhCCCCEEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 578888777654 4566655555667889999865433 4455544 4468999998654
No 22
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis}
Probab=91.52 E-value=2.4 Score=42.70 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=75.4
Q ss_pred EEecCChhHHHHHHHHHHhcCCceEEecCCCChh------H-HHHHHHHHHc-CCEEEEc-CCcceEEEEcCCCCccccc
Q 010070 92 VTLPGSKSLSNRILLLAALSEGTTVVDNLLSSED------I-HHMLDALKKL-GLNVEED-FAMKRAIVEGCGGLFPLAK 162 (519)
Q Consensus 92 i~~pgsKs~s~R~l~~AaLa~g~~~i~n~~~~~d------v-~~~l~aL~~l-Ga~v~~~-~~~~~l~I~g~~g~~~~~~ 162 (519)
+..-|+. +..-.|.+|+|+..+++|+|.-..|+ - ...+++|.++ +++++.. .+...++.... .+..
T Consensus 9 ~~f~GgQ-ilR~alaLS~ltgkpvrI~nIRa~r~~PGL~~qhls~l~ll~~itng~v~g~~~gst~l~F~Pg--~i~g-- 83 (365)
T 3pqv_A 9 VTFEGSR-NFRLRVVMATLSGKAIKIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPG--IITG-- 83 (365)
T ss_dssp EEEESST-THHHHHHHHHHHCCCEEEESSSTTSSSCSCCHHHHHHHHHHHHHEESCEEEECTTSSCEEEECC--EECC--
T ss_pred EEEeChh-HHHHHHHHHHhhCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhCceEeeeecCCcEEEEECC--cccC--
Confidence 4445664 34445889999999999999743322 2 3345666664 3454432 22345555432 1222
Q ss_pred cCCCceEEEeCCchhhhhHHHHHHHHc---CCCeEEEEcCCCCCC-CCChHHH----HHHHHhCCCE-EEE
Q 010070 163 QQTGEIELFLGNAGTAMRPLTAAVTAA---GGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGAD-VDC 224 (519)
Q Consensus 163 ~~~~~~~l~~g~sgt~~r~L~a~~~~~---~~~~~~~l~G~~~l~-~Rp~~~l----~~~L~~lGa~-v~~ 224 (519)
....+++|.+|+...+|.+++..+ ..+.++++.|+-.-. +.+++.+ +-.|++||++ ++.
T Consensus 84 ---G~~~~d~~tagSi~l~l~~lL~~a~f~~~p~~l~l~GgTn~~~sPsvDy~~~v~lP~l~~fG~~~~~l 151 (365)
T 3pqv_A 84 ---GSYTHQCPNSKPVGYFAEPMLYLAPFSKKKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVRECAL 151 (365)
T ss_dssp ---EEEEEECCTTSCHHHHHGGGGGTGGGSSSCEEEEEEECCCCSSSCCHHHHHHTTHHHHHHTTCCSCEE
T ss_pred ---CeEEEECCCCcchHHHHHHHHHHHhcCCCcEEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 145788998888776655544443 467889999865433 4555544 4568999997 553
No 23
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=90.29 E-value=8 Score=38.70 Aligned_cols=123 Identities=16% Similarity=0.257 Sum_probs=71.9
Q ss_pred chhhhhHHHHHHHHcCCCeEEEEcCCCCCCCCC-h-HHH---HHHHHh-CCCEEEEeCCCCcCcEEEEcCCCCCceEEEE
Q 010070 175 AGTAMRPLTAAVTAAGGNLSYILDGVPRMRERP-I-GDL---VTGLKQ-LGADVDCILGTNCPPVRINGKGGLPGGKVKL 248 (519)
Q Consensus 175 sgt~~r~L~a~~~~~~~~~~~~l~G~~~l~~Rp-~-~~l---~~~L~~-lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l 248 (519)
.|..+|.-+++.+..+.+ +.|.+--.=+..| + ..+ ++.+.+ .|++++..+ .|...+...++ .+.++++++
T Consensus 35 GGQ~lR~alaLS~Ltgkp--v~I~nIR~~r~~PGL~~qhl~~l~ll~~it~a~veg~~-~GSt~l~f~PG-~i~gg~~~~ 110 (358)
T 3tut_A 35 GGQILRSALSLSMITGQP--FTITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAE-LGSQRLLFRPG-TVRGGDYRF 110 (358)
T ss_dssp STHHHHHHHHHHHHHCCC--EEEESTTTTSSSCSCCHHHHHHHHHHHHHHTCEEECCS-TTCSCEEEECC-CCCCCEEEE
T ss_pred chHHHHHHHHHHHhhCCC--EEEEEecCCCCCccccHHHHHHHHHHHHhhCCEEEEee-cCcEEEEEECC-CccCceEEE
Confidence 355677666665554444 5454411101122 2 122 444444 488998654 34435777664 678888877
Q ss_pred cCC--CCHH-HHHHHHHHhhcCCCeEEEEEcC--C---CCChhHHH-HHHHHHHHcCCEEEE
Q 010070 249 SGK--LSSQ-YLTALLMAAPLALGNVEIEIID--K---LISVPYVE-MTLKLMERFGVFVEH 301 (519)
Q Consensus 249 ~gd--~Ssq-~~salllAA~la~g~~~I~~~~--~---~~s~~~v~-~t~~~L~~~G~~i~~ 301 (519)
+-. -|-. ++-++|..+++++++++|++.+ + ..+.+|++ .++.+|++||+.++.
T Consensus 111 d~~tagSi~l~lq~lLp~~lFa~~p~~l~l~GgTn~~~~psvDy~~~v~lP~l~~fG~~~~l 172 (358)
T 3tut_A 111 AIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQT 172 (358)
T ss_dssp ECSSSCBHHHHHHHHHHHHTTSSSCEEEEEEEBSCCTTSCCHHHHHHTHHHHHHHHTCCEEE
T ss_pred ECCCcccHHHHHHHHHHHHHhCCCCEEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 632 3333 3457777788888887776542 2 23556654 478899999998764
No 24
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis}
Probab=58.32 E-value=59 Score=32.53 Aligned_cols=122 Identities=14% Similarity=0.143 Sum_probs=65.0
Q ss_pred chhhhhHHHHHHHHcCCCeEEEEcCC--CCC--CCCChHH-HHHHHHh-CCCEEEEeCCCCcCcEEEEcCCCCCceEEEE
Q 010070 175 AGTAMRPLTAAVTAAGGNLSYILDGV--PRM--RERPIGD-LVTGLKQ-LGADVDCILGTNCPPVRINGKGGLPGGKVKL 248 (519)
Q Consensus 175 sgt~~r~L~a~~~~~~~~~~~~l~G~--~~l--~~Rp~~~-l~~~L~~-lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l 248 (519)
.|..+|.-+++.+..+.+ +.|.+- .+- +-|+..- .++.|.+ .+++++..+- +...+...++ .+.+++|++
T Consensus 13 GgQilR~alaLS~ltgkp--vrI~nIRa~r~~PGL~~qhls~l~ll~~itng~v~g~~~-gst~l~F~Pg-~i~gG~~~~ 88 (365)
T 3pqv_A 13 GSRNFRLRVVMATLSGKA--IKIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIEISY-TGTTVIFRPG-IITGGSYTH 88 (365)
T ss_dssp SSTTHHHHHHHHHHHCCC--EEEESSSTTSSSCSCCHHHHHHHHHHHHHEESCEEEECT-TSSCEEEECC-EECCEEEEE
T ss_pred ChhHHHHHHHHHHhhCCC--EEEEEecCCCCCCCccHHHHHHHHHHHHHhCceEeeeec-CCcEEEEECC-cccCCeEEE
Confidence 366778766665554444 444431 110 1122111 1555555 4555554332 2335666654 577888776
Q ss_pred cCC--CCHHH-HHHHHHHhhcCCCeEEEEEcC--C---CCChhHHH-HHHHHHHHcCCE-EE
Q 010070 249 SGK--LSSQY-LTALLMAAPLALGNVEIEIID--K---LISVPYVE-MTLKLMERFGVF-VE 300 (519)
Q Consensus 249 ~gd--~Ssq~-~salllAA~la~g~~~I~~~~--~---~~s~~~v~-~t~~~L~~~G~~-i~ 300 (519)
+-. -|--+ +-++|+.+++++++++|++.+ + ..+.+|++ .++.+|++||++ ++
T Consensus 89 d~~tagSi~l~l~~lL~~a~f~~~p~~l~l~GgTn~~~sPsvDy~~~v~lP~l~~fG~~~~~ 150 (365)
T 3pqv_A 89 QCPNSKPVGYFAEPMLYLAPFSKKKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVRECA 150 (365)
T ss_dssp ECCTTSCHHHHHGGGGGTGGGSSSCEEEEEEECCCCSSSCCHHHHHHTTHHHHHHTTCCSCE
T ss_pred ECCCCcchHHHHHHHHHHHhcCCCcEEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 632 33332 224444556667777766442 2 23555654 468899999997 54
No 25
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=53.20 E-value=14 Score=36.78 Aligned_cols=109 Identities=24% Similarity=0.295 Sum_probs=58.2
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccCC
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~D 327 (519)
+.|+++..-+++||+|- ...|+ +..++....+.|++.|.+++..+....+-+.|.. .+-.--.+
T Consensus 32 l~G~~~d~QiaAfL~al-r~kge----------t~eEi~g~~~am~~~~~~v~~~~~~~~vD~~gTG-----Gdg~~t~n 95 (346)
T 4hkm_A 32 MRGEVSDAMVSAILTGL-RVKKE----------TIGEIAGAATVMREFSRRVEVTDRRHMVDIVGTG-----GDGSHTFN 95 (346)
T ss_dssp HTTCSCHHHHHHHHHHH-HHHCC----------CHHHHHHHHHHHHHHSCCCCCSCCTTEEEEECC-----------CCC
T ss_pred HCCCCCHHHHHHHHHHH-HHHCc----------CHHHHHHHHHHHHHhCCCCCCCCCccceeecCCC-----CCCccccC
Confidence 45677776678898874 33343 2456788889999999888754322244455431 11001112
Q ss_pred hhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeC
Q 010070 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 376 (519)
Q Consensus 328 ~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~ 376 (519)
.++++-+++++ .|-+|-.+|-....-+ ..-.|.|+.+|++++...
T Consensus 96 iSt~~a~v~Aa--~G~~V~khG~r~~ss~--~GsaD~LeaLG~~~~ls~ 140 (346)
T 4hkm_A 96 ISTCAMFVAAA--GGAKVAKHGNRSVSSK--SGSADALEALGAVIELQP 140 (346)
T ss_dssp HHHHHHHHHHH--TTCEEEEEC-----------CHHHHHTTTCCCCCCH
T ss_pred cHHHHHHHHHh--cCCCeeecCCCCCCCC--cCHHHHHHHcCCCcccCH
Confidence 44433333322 3666666653221122 245688999999987553
No 26
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=37.41 E-value=66 Score=31.64 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=60.0
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccCC
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~D 327 (519)
+.|+++..-+++||+|- ...|+ +..++.-..+.|++.+..+....+ ..+-+.|.. ++-.--.+
T Consensus 26 ~~g~~~~~QiaAfL~al-r~kge----------t~~Eiag~~~am~~~~~~~~~~~~-~~vD~~gTG-----Gdg~~tfN 88 (329)
T 2elc_A 26 MAGEVSPVRAAGLLVAL-SLRGE----------RPHEIAAMARAMREAARPLRVHRR-PLLDIVGTG-----GDGKGLMN 88 (329)
T ss_dssp HTTCSCHHHHHHHHHHH-HHHCC----------CHHHHHHHHHHHHHHSCCCCCCCS-SEEEEEECC-----CCSSCCCC
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCCCCCCCC-CeeEEcCCC-----CCCCCccc
Confidence 35667776678888875 34443 245678888999999987755321 134454421 11001112
Q ss_pred hhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEe
Q 010070 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 375 (519)
Q Consensus 328 ~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~ 375 (519)
.++++-+++++ .|-+|..+|-...+-+ ..-.|+|+.+|++++..
T Consensus 89 iSt~~a~v~Aa--~Gv~V~kHGnr~~ss~--~GsaDvLeaLG~~~~~~ 132 (329)
T 2elc_A 89 LSTLAALVAAA--GGVAVAKHGNRAASSR--AGSADLLEALGVDLEAP 132 (329)
T ss_dssp CHHHHHHHHHH--TTCEEEEEECCCTTTT--CSHHHHHHHTTCCTTCC
T ss_pred cHHHHHHHHHh--CCCCEEEeCCCCCCCc--ccHHHHHHhCCCCCCCC
Confidence 34433333332 3666766653322223 24578999999987654
No 27
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=35.85 E-value=58 Score=32.30 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=58.9
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCceeEEEEecCCcccCCccccccCC
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~i~~D 327 (519)
+.|.++..-+++||+|- ...|+ +..++.-..+.|++.+..+..... ..+-+.|.+. . +. --.|
T Consensus 39 l~g~~~~~QiaAfL~al-r~kge----------t~eEiag~~~am~~~~~~~~~~~~-~~vD~~gTGG-d-g~---~tfN 101 (345)
T 1khd_A 39 VRGELEDSQLAAALISM-KMRGE----------RPEEIAGAASALLADAQPFPRPDY-DFADIVGTGG-D-GT---NSIN 101 (345)
T ss_dssp TTTCSCHHHHHHHHHHH-HHHCC----------CHHHHHHHHHHHHHTSCCCCCCSS-CCEEEEECCC-C-SS---CBCC
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCcCCCCCC-CeeeecCCCC-C-CC---Cccc
Confidence 45667776678888875 44443 245688889999999988754321 1343444211 1 11 1125
Q ss_pred hhhHHHHHHHHHhcCCeEEEEccCCCCC-cchhHHHHHHHHcCCEEEEe
Q 010070 328 ASSASYFVAGAAVTGGTVTVEGCGTSSL-QGDVKFAEVLEKMGAKVTWT 375 (519)
Q Consensus 328 ~~~a~~~la~aa~~~g~v~i~g~~~~~~-~~d~~~~~~L~~mGa~v~~~ 375 (519)
+++++-++++++ |-+|-.+|-...+- + ..-.|.|+.+|++++..
T Consensus 102 iSt~~A~v~Aa~--Gv~VakHGnr~~ss~~--~GsaDvLeaLGv~~~~~ 146 (345)
T 1khd_A 102 ISTASAFVAASC--GAKVAKHGNRSVCQPL--AGSCDLLQAFGIRLDMS 146 (345)
T ss_dssp CHHHHHHHHHHH--TCCEEEEECC-----------CHHHHHTTCCTTCC
T ss_pred hHHHHHHHHHhC--CCcEEEeCCCCCCCCc--ccHHHHHHhCCCCCCCC
Confidence 565544444443 66676665332222 2 34568899999987654
No 28
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=34.85 E-value=45 Score=33.53 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=60.6
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEEEEeCc-eeEEEEecCCcccCCccccccC
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDS-WDRFFIQGGQKYKSPGNAFVEG 326 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i~~~~~-~~~i~I~g~~~l~~~~~~~i~~ 326 (519)
+.|.++..-+++||+|- ...|+ +..++....+.|++.+.++..... ...+-+.|... ... --.
T Consensus 52 ~~G~~~~~QiaAfL~Al-r~kGe----------t~eEi~g~~~am~~~~~~v~~~~~~~~~vD~~gTGG---dg~--~T~ 115 (377)
T 3r88_A 52 MTGNARPAQIAAFAVAM-TMKAP----------TADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGG---DGV--NTV 115 (377)
T ss_dssp HTTCSCHHHHHHHHHHH-HHHCC----------CHHHHHHHHHHHHHHSCCCCTTCSCTTCEEEEECCC---CSC--CBC
T ss_pred HCCCCCHHHHHHHHHHH-HHhCc----------CHHHHHHHHHHHHHhCCcCCCccCCCCCeEEeCCCC---CCc--Ccc
Confidence 45667766678888874 44443 245677888999999987764321 11344443210 011 111
Q ss_pred ChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEeC
Q 010070 327 DASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 376 (519)
Q Consensus 327 D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~ 376 (519)
+.++++-+++++ +|-+|...|-..-+-+ ..-.|+|+.+|++++...
T Consensus 116 niSt~~A~v~Aa--~Gv~VaKHGnR~~ss~--~GsaDvLEaLGv~~~l~~ 161 (377)
T 3r88_A 116 NLSTMAAIVVAA--AGVPVVKHGNRAASSL--SGGADTLEALGVRIDLGP 161 (377)
T ss_dssp CHHHHHHHHHHH--TTCCEEEEECCCSSSS--CCHHHHHHHTTCCCCCCH
T ss_pred ccHHHHHHHHHh--cCCeEEeECCCCCCCc--ccHHHHHHHcCCCcccch
Confidence 345443333333 3666766653322222 235689999999987653
No 29
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=32.69 E-value=91 Score=31.23 Aligned_cols=107 Identities=22% Similarity=0.171 Sum_probs=56.9
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhHHHHHHHHHHHcCCEE--------EEeC--ceeEEEEecCCccc
Q 010070 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFV--------EHSD--SWDRFFIQGGQKYK 317 (519)
Q Consensus 248 l~gd~Ssq~~salllAA~la~g~~~I~~~~~~~s~~~v~~t~~~L~~~G~~i--------~~~~--~~~~i~I~g~~~l~ 317 (519)
+.|.++..-+++||+|- ...|+ +..++....+.|++.+..+ ...+ . ..+-+.|.+
T Consensus 53 l~G~~~~~QiaAfL~Al-r~kGe----------t~eEiag~~~am~~~~~~~~~~~~~~~~~~~~~~-~~vD~~gTG--- 117 (374)
T 1vqu_A 53 LSEAVPPELSGAILTAL-NFKGV----------SADELTGMAEVLQSQSKMGTGENYSQLPITNSPF-SIIDTCGTG--- 117 (374)
T ss_dssp HTTCSCHHHHHHHHHHH-HHHCC----------CHHHHHHHHHHHHTTCCC-----------CCSSS-CCEEEEECC---
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCccccccccccCccccCC-CeeEEeCCC---
Confidence 45666766678888875 44443 2456888899999999887 4431 1 123333321
Q ss_pred CCccccccCChhhHHHHHHHHHhcCCeEEEEccCCCCCcchhHHHHHHHHcCCEEEEe
Q 010070 318 SPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 375 (519)
Q Consensus 318 ~~~~~~i~~D~~~a~~~la~aa~~~g~v~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~ 375 (519)
++-.-..+.++++-+++++ .|-+|-..|-...+-+ ..-.|+|+.+|++++..
T Consensus 118 --Gdg~~tfNiSt~~A~v~Aa--~Gv~VaKHGnR~~ss~--~GsaDvLEaLGv~~~~~ 169 (374)
T 1vqu_A 118 --GDGSSTFNISTAVAFVAAA--YGVPVAKHGNRSASSL--TGSADVLEALGVNLGAS 169 (374)
T ss_dssp -----CCBCCHHHHHHHHHHH--TTCCEEEEEECC--CT--TCHHHHHHHTTCCTTCC
T ss_pred --CCCCCccchHHHHHHHHHh--CCCCEEEECCCCCCCC--CCHHHHHHhCCCCCCCC
Confidence 1111122334433333333 3666766653322223 24578999999988644
No 30
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=31.80 E-value=1.9e+02 Score=22.92 Aligned_cols=81 Identities=14% Similarity=0.102 Sum_probs=49.9
Q ss_pred CeEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeE
Q 010070 192 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNV 271 (519)
Q Consensus 192 ~~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~ 271 (519)
..+++|....-|..||...+++..++|.++|....+ +.. +++ .|- .++|..++.-+..+
T Consensus 15 ~~~v~I~n~~GLHARPAa~~v~~A~~f~s~I~i~~~---------------~~~--vdA-KSI---m~lmsLg~~~G~~i 73 (100)
T 1kkl_H 15 QKTFKVTADSGIHARPATVLVQTASKYDADVNLEYN---------------GKT--VNL-KSI---MGVMSLGIAKGAEI 73 (100)
T ss_dssp CEEEEBCCTTCSCHHHHHHHHHHHHTCSSEEEEEET---------------TEE--EET-TCH---HHHHHTCCCTTCEE
T ss_pred EEEEEEcCCCccCHHHHHHHHHHHhhCCCeEEEEEC---------------CEE--Eec-HhH---HHHhcCCCCCCCEE
Confidence 456777776668899999999999999998875321 111 333 332 46776664445567
Q ss_pred EEEEcCCCCChhHHHHHHHHHHH
Q 010070 272 EIEIIDKLISVPYVEMTLKLMER 294 (519)
Q Consensus 272 ~I~~~~~~~s~~~v~~t~~~L~~ 294 (519)
+|...++ .....++.+.+++..
T Consensus 74 ~i~a~G~-Dee~Al~~l~~li~~ 95 (100)
T 1kkl_H 74 TISASGA-DENDALNALEETMKS 95 (100)
T ss_dssp EEEEEST-THHHHHHHHHHHHHH
T ss_pred EEEEeCC-CHHHHHHHHHHHHHh
Confidence 7765442 112334555555554
No 31
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=28.23 E-value=56 Score=32.39 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=46.2
Q ss_pred ChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCCC
Q 010070 123 SEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPR 202 (519)
Q Consensus 123 ~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~~ 202 (519)
.+.+..+.+++++.|.++...+....+.+.|.||.- ...+++ .++.+.++++ ...++...|...
T Consensus 55 ~eEi~g~~~am~~~~~~v~~~~~~~~vD~~gTGGdg--------~~t~ni-------St~~a~v~Aa-~G~~V~khG~r~ 118 (346)
T 4hkm_A 55 IGEIAGAATVMREFSRRVEVTDRRHMVDIVGTGGDG--------SHTFNI-------STCAMFVAAA-GGAKVAKHGNRS 118 (346)
T ss_dssp HHHHHHHHHHHHHHSCCCCCSCCTTEEEEECC--------------CCCH-------HHHHHHHHHH-TTCEEEEEC---
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeecCCCCCC--------ccccCc-------HHHHHHHHHh-cCCCeeecCCCC
Confidence 578889999999999988764433356666665421 012221 1444444443 356788888655
Q ss_pred CCCCChHHHHHHHHhCCCEEEE
Q 010070 203 MRERPIGDLVTGLKQLGADVDC 224 (519)
Q Consensus 203 l~~Rp~~~l~~~L~~lGa~v~~ 224 (519)
+.++-- -.|.|+.+|+++..
T Consensus 119 ~ss~~G--saD~LeaLG~~~~l 138 (346)
T 4hkm_A 119 VSSKSG--SADALEALGAVIEL 138 (346)
T ss_dssp --------CHHHHHTTTCCCCC
T ss_pred CCCCcC--HHHHHHHcCCCccc
Confidence 554432 26889999998764
No 32
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=24.48 E-value=86 Score=30.78 Aligned_cols=84 Identities=23% Similarity=0.220 Sum_probs=53.9
Q ss_pred CChhHHHHHHHHHHcCCEEEEcCCcceEEEEcCCCCccccccCCCceEEEeCCchhhhhHHHHHHHHcCCCeEEEEcCCC
Q 010070 122 SSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201 (519)
Q Consensus 122 ~~~dv~~~l~aL~~lGa~v~~~~~~~~l~I~g~~g~~~~~~~~~~~~~l~~g~sgt~~r~L~a~~~~~~~~~~~~l~G~~ 201 (519)
..+.+..+.+++++.+..+.+..+ ..+.+.|.||.- ...+++. ++.+.++++ ...++...|..
T Consensus 48 t~~Eiag~~~am~~~~~~~~~~~~-~~vD~~gTGGdg--------~~tfNiS-------t~~a~v~Aa-~Gv~V~kHGnr 110 (329)
T 2elc_A 48 RPHEIAAMARAMREAARPLRVHRR-PLLDIVGTGGDG--------KGLMNLS-------TLAALVAAA-GGVAVAKHGNR 110 (329)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCCCS-SEEEEEECCCCS--------SCCCCCH-------HHHHHHHHH-TTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCC-CeeEEcCCCCCC--------CCccccH-------HHHHHHHHh-CCCCEEEeCCC
Confidence 457899999999999988765422 356677776421 1123222 444444443 35678888877
Q ss_pred CCCCCChHHHHHHHHhCCCEEEE
Q 010070 202 RMRERPIGDLVTGLKQLGADVDC 224 (519)
Q Consensus 202 ~l~~Rp~~~l~~~L~~lGa~v~~ 224 (519)
.+.++-- -.|.|+.+|+++..
T Consensus 111 ~~ss~~G--saDvLeaLG~~~~~ 131 (329)
T 2elc_A 111 AASSRAG--SADLLEALGVDLEA 131 (329)
T ss_dssp CTTTTCS--HHHHHHHTTCCTTC
T ss_pred CCCCccc--HHHHHHhCCCCCCC
Confidence 7766544 47899999998753
No 33
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S* 3oqm_S* 3oqn_S* 3oqo_S*
Probab=23.94 E-value=2.4e+02 Score=21.52 Aligned_cols=80 Identities=9% Similarity=0.070 Sum_probs=48.4
Q ss_pred eEEEEcCCCCCCCCChHHHHHHHHhCCCEEEEeCCCCcCcEEEEcCCCCCceEEEEcCCCCHHHHHHHHHHhhcCCCeEE
Q 010070 193 LSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVE 272 (519)
Q Consensus 193 ~~~~l~G~~~l~~Rp~~~l~~~L~~lGa~v~~~~~~~~~pi~I~g~~~l~~~~i~l~gd~Ssq~~salllAA~la~g~~~ 272 (519)
.++++....-|.-||...+++..++|..+|....+ +.. +++ .|- .++|..+..-+..++
T Consensus 4 ~~v~i~~~~GlHARpAa~~v~~a~~f~s~I~i~~~---------------~~~--vda-KSi---m~lm~L~~~~g~~i~ 62 (88)
T 1y51_A 4 KTFKVVSDSGIHARPATILVQTASKWNSEIQLEYN---------------GKT--VNL-KSI---MGVMSLGIPKGATIK 62 (88)
T ss_dssp EEEEBCCTTCSCHHHHHHHHHHHHTSSSEEEEEET---------------TEE--EET-TCH---HHHHHTCCCTTCEEE
T ss_pred EEEEEcCCCCccHHHHHHHHHHHhhCCCeEEEEEC---------------CEE--Eeh-HhH---HHHHhcCCCCCCEEE
Confidence 45677766668899999999999999998875321 111 333 332 466665544445577
Q ss_pred EEEcCCCCChhHHHHHHHHHHH
Q 010070 273 IEIIDKLISVPYVEMTLKLMER 294 (519)
Q Consensus 273 I~~~~~~~s~~~v~~t~~~L~~ 294 (519)
|...++ .....++.+.+++..
T Consensus 63 i~~~G~-De~~A~~~l~~l~~~ 83 (88)
T 1y51_A 63 ITAEGA-DAAEAMAALTDTLAK 83 (88)
T ss_dssp EEEEST-THHHHHHHHHHHHHH
T ss_pred EEEeCC-CHHHHHHHHHHHHHh
Confidence 665442 112335555555554
Done!