RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 010070
(519 letters)
>gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase.
Length = 443
Score = 897 bits (2319), Expect = 0.0
Identities = 382/442 (86%), Positives = 408/442 (92%)
Query: 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKL 136
A EI LQPI+EISGTV LPGSKSLSNRILLLAALSEGTTVVDNLL S+DI +ML ALK L
Sbjct: 1 AEEITLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTL 60
Query: 137 GLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYI 196
GLNVEED RA+VEGCGG FP++ ++ELFLGNAGTAMRPLTAAVTAAGGN SY+
Sbjct: 61 GLNVEEDSENNRAVVEGCGGKFPVSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYV 120
Query: 197 LDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQY 256
LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCPPVR+N GGLPGGKVKLSG +SSQY
Sbjct: 121 LDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCPPVRVNAAGGLPGGKVKLSGSISSQY 180
Query: 257 LTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316
LTALLMAAPLALG+VEIEI+DKLISVPYVEMTLKLMERFGV VEHSDSWDRFFI+GGQKY
Sbjct: 181 LTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFIKGGQKY 240
Query: 317 KSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 376
KSPGNA+VEGDASSASYF+AGAA+TGGTVTVEGCGT+SLQGDVKFAEVLEKMGAKV WTE
Sbjct: 241 KSPGNAYVEGDASSASYFLAGAAITGGTVTVEGCGTTSLQGDVKFAEVLEKMGAKVEWTE 300
Query: 377 NSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETE 436
NSVTVTGPPRD +G KHL+A+DVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETE
Sbjct: 301 NSVTVTGPPRDAFGGKHLKAIDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETE 360
Query: 437 RMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTI 496
RMIAICTELRKLGATVEEGPDYC+ITPP+KLK A IDTYDDHRMAMAFSLAAC DVPVTI
Sbjct: 361 RMIAICTELRKLGATVEEGPDYCIITPPKKLKPAEIDTYDDHRMAMAFSLAACGDVPVTI 420
Query: 497 KDPSCTRKTFPDYFDVLDSVTK 518
DP CTRKTFP YFDVL+S+ K
Sbjct: 421 NDPGCTRKTFPTYFDVLESIAK 442
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 545 bits (1407), Expect = 0.0
Identities = 241/444 (54%), Positives = 301/444 (67%), Gaps = 23/444 (5%)
Query: 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
L P+ GTV LPGSKS+SNR+LLLAALSEGTT V +LL S+D MLDAL+ LG VE
Sbjct: 9 LPPLLSAGGTVRLPGSKSISNRVLLLAALSEGTTTVRDLLDSDDTRVMLDALRALGCGVE 68
Query: 142 EDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
+ R + G GG FP+ + +LFLGNAGTAMRPLTAA+ GG Y L GVP
Sbjct: 69 QLGDTYR--ITGLGGQFPVKQ-----ADLFLGNAGTAMRPLTAALALLGG--EYELSGVP 119
Query: 202 RMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALL 261
RM ERPIGDLV L+QLG D+D + PP+RI +++ G +SSQ+LTALL
Sbjct: 120 RMHERPIGDLVDALRQLGCDIDYLGNEGFPPLRIGPAPLRLDAPIRVRGDVSSQFLTALL 179
Query: 262 MAAPLALG-NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPG 320
MA PL ++ IE++ +LIS PY+E+TL L+ RFG+ V+ + W RF I G +Y+SPG
Sbjct: 180 MALPLVARRDITIEVVGELISKPYIEITLNLLARFGIAVQR-EGWQRFTIPAGSRYRSPG 238
Query: 321 NAFVEGDASSASYFVAGAAVTGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
VEGDASSASYF+A A+ GG V +EG G S+QGD++FAE MGA+VT N +
Sbjct: 239 EIHVEGDASSASYFIAAGAIAGGAPVRIEGVGRDSIQGDIRFAEAARAMGAQVTSGPNWL 298
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMI 439
V R L+A+D++ N +PD AMTLAV+AL+ADG T +R++ASWRVKET+R+
Sbjct: 299 EV----RRGAWP--LKAIDLDCNHIPDAAMTLAVMALYADGTTTLRNIASWRVKETDRIA 352
Query: 440 AICTELRKLGATVEEGPDYCVITPPEK---LKVAAIDTYDDHRMAMAFSLAA--CADVPV 494
A+ TELRKLGATVEEG DY +TPP + K AAI TYDDHRMAM FSLAA A +PV
Sbjct: 353 AMATELRKLGATVEEGADYIRVTPPAQAADWKAAAIHTYDDHRMAMCFSLAAFNPAGLPV 412
Query: 495 TIKDPSCTRKTFPDYFDVLDSVTK 518
I DP C KTFPDYF+ L SV +
Sbjct: 413 RINDPKCVAKTFPDYFEALFSVAQ 436
>gnl|CDD|235037 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 435
Score = 515 bits (1328), Expect = 0.0
Identities = 188/447 (42%), Positives = 269/447 (60%), Gaps = 23/447 (5%)
Query: 79 EIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGL 138
+++ P +SGTV +PGSKS+S+R LLLAAL+EG T + NLL SED L+AL+ LG+
Sbjct: 4 MLLIIPPSPLSGTVRVPGSKSISHRALLLAALAEGETTITNLLRSEDTLATLNALRALGV 63
Query: 139 NVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILD 198
+E+D +VEG GG + L GN+GT MR LT + G +L
Sbjct: 64 EIEDD----EVVVEGVGGGGLKEPEDV----LDCGNSGTTMRLLTGLLALQPGE--VVLT 113
Query: 199 GVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLT 258
G +R+RP+G L+ L+Q+GA ++ P+ I +GG GG ++ G +SSQ++
Sbjct: 114 GDESLRKRPMGRLLDPLRQMGAKIEGR-DEGYLPLTI--RGGKKGGPIEYDGPVSSQFVK 170
Query: 259 ALLMAAPL-ALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD--RFFIQGGQK 315
+LL+ APL A G+ E +I+ L S P+ E+TL+++ FGV VE+ + W R I+GGQ+
Sbjct: 171 SLLLLAPLFAEGDTETTVIEPLPSRPHTEITLRMLRAFGVEVENVEGWGYRRIVIKGGQR 230
Query: 316 YKSPGNAFVEGDASSASYFVAGAAVTGG-TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374
+ + V GD SSA++F+A AA+TGG VT+ G +S QG +VLEKMGA +
Sbjct: 231 LR-GQDITVPGDPSSAAFFLAAAAITGGSEVTITNVGLNSTQGGKAIIDVLEKMGADIEI 289
Query: 375 TENSVTVTGPPRDPYGRK-HLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVK 433
EN P D R L+ +D+++ + D A TLAV+A FA+G T IR+ RVK
Sbjct: 290 -ENEREGGEPVGDIRVRSSELKGIDIDIPDIIDEAPTLAVLAAFAEGTTVIRNAEELRVK 348
Query: 434 ETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADV 492
ET+R+ A+ TELRKLGA VEE D +IT +D+Y DHR+AMAF++A A+
Sbjct: 349 ETDRIAAMATELRKLGAEVEETEDGLIITGGPLA--GVVDSYGDHRIAMAFAIAGLAAEG 406
Query: 493 PVTIKDPSCTRKTFPDYFDVLDSVTKR 519
PVTI DP C K+FPD+F+ L S+
Sbjct: 407 PVTIDDPECVAKSFPDFFEDLASLGAN 433
>gnl|CDD|238797 cd01556, EPSP_synthase, EPSP synthase domain. 3-phosphoshikimate
1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EC
2.5.1.19) catalyses the reaction between
shikimate-3-phosphate (S3P) and phosphoenolpyruvate
(PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP),
an intermediate in the shikimate pathway leading to
aromatic amino acid biosynthesis. The reaction is
phosphoenolpyruvate + 3-phosphoshikimate = phosphate +
5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in
bacteria and plants but not animals. The enzyme is the
target of the widely used herbicide glyphosate, which
has been shown to occupy the active site. In bacteria
and plants, it is a single domain protein, while in
fungi, the domain is found as part of a multidomain
protein with functions that are all part of the
shikimate pathway.
Length = 409
Score = 506 bits (1305), Expect = e-178
Identities = 187/432 (43%), Positives = 270/432 (62%), Gaps = 26/432 (6%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+SG +T+PGSKS+S+R LLLAAL+EG + ++NLL S+D L+AL+ LG +EE+
Sbjct: 1 LSGEITVPGSKSISHRALLLAALAEGESRIENLLDSDDTLATLEALRALGAKIEEE--GG 58
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERP 207
+ G GGL E L GN+GT MR LT + GG+ +L G +R+RP
Sbjct: 59 TVEIVGGGGLGLPP-----EAVLDCGNSGTTMRLLTGLLALQGGD--SVLTGDESLRKRP 111
Query: 208 IGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLA 267
+G LV L+QLGA+++ G PP + G GGL GG+V++ G +SSQ+ +ALL+AAPLA
Sbjct: 112 MGRLVDALRQLGAEIEGREGGGYPP--LIGGGGLKGGEVEIPGAVSSQFKSALLLAAPLA 169
Query: 268 LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327
G I I +L S PY++ T +++ FG VE + ++GGQKYK P VEGD
Sbjct: 170 EGPTTIIIG-ELESKPYIDHTERMLRAFGAEVEVDG-YRTITVKGGQKYKGP-EYTVEGD 226
Query: 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT-ENSVTVTGPPR 386
ASSA++F+A AA+TG + ++ G +S GD +VL++MGA + E++V V
Sbjct: 227 ASSAAFFLAAAAITGSEIVIKNVGLNS--GDTGIIDVLKEMGADIEIGNEDTVVVESGG- 283
Query: 387 DPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELR 446
L+ +D++ N +PD A TLAV+A FA+GPT IR+ A RVKE++R+ A+ TELR
Sbjct: 284 ------KLKGIDIDGNDIPDEAPTLAVLAAFAEGPTRIRNAAELRVKESDRIAAMATELR 337
Query: 447 KLGATVEEGPDYCVITPPE-KLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRK 504
KLGA VEE D +I K + TY DHR+AM+F++A A+ VTI+DP C K
Sbjct: 338 KLGADVEETEDGLIIEGGPLKGAGVEVYTYGDHRIAMSFAIAGLVAEGGVTIEDPECVAK 397
Query: 505 TFPDYFDVLDSV 516
+FP++F+ L+S+
Sbjct: 398 SFPNFFEDLESL 409
>gnl|CDD|233373 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase.
This model represents
3-phosphoshikimate-1-carboxyvinyltransferase (aroA),
which catalyzes the sixth of seven steps in the
shikimate pathway of the biosynthesis of chorimate.
Chorismate is last common precursor of all three
aromatic amino acids. Sequences scoring between the
trusted and noise cutoffs include fragmentary and
aberrant sequences in which generally well-conserved
motifs are missing or altererd, but no example of a
protein known to have a different function [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 409
Score = 503 bits (1297), Expect = e-177
Identities = 194/432 (44%), Positives = 259/432 (59%), Gaps = 25/432 (5%)
Query: 90 GTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRA 149
G + PGSKS+++R L+LAAL+EG T V NLL SED LDAL+ LG +E+ + A
Sbjct: 1 GEIRAPGSKSITHRALILAALAEGETRVRNLLRSEDTLATLDALRALGAKIEDG--GEVA 58
Query: 150 IVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIG 209
++EG GG P + EL LGN+GT R LT + A G +L G +R+RP+G
Sbjct: 59 VIEGVGGKEP-------QAELDLGNSGTTARLLTGVLALADGE--VVLTGDESLRKRPMG 109
Query: 210 DLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALG 269
LV L+QLGA++ + G P+ I G LPGG V +SG SSQY +ALL+AAP AL
Sbjct: 110 RLVDALRQLGAEISSLEGGGSLPLTI--SGPLPGGIVYISGSASSQYKSALLLAAP-ALQ 166
Query: 270 NVEIEI-IDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDA 328
V I I + L S PY+E+TL L+ FGV VE SD + + GGQKY G V GD
Sbjct: 167 AVGITIVGEPLKSRPYIEITLDLLGSFGVEVERSDG-RKIVVPGGQKYGPQG-YDVPGDY 224
Query: 329 SSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDP 388
SSA++F+A AA+TGG VT+E G + QGD VLE+MGA + E+ + V G
Sbjct: 225 SSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIEVEEDDLIVEGASG-- 282
Query: 389 YGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKL 448
L+ + ++M+ M D TLAV+A FA+G T I RVKE++R+ AI ELRKL
Sbjct: 283 -----LKGIKIDMDDMIDELPTLAVLAAFAEGVTRITGAEELRVKESDRIAAIAEELRKL 337
Query: 449 GATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFP 507
G VEE D I ++LK A +DT+ DHR+AMAF++A A+ V I DP C K+FP
Sbjct: 338 GVDVEEFEDGLYIRGKKELKGAVVDTFGDHRIAMAFAVAGLVAEGEVLIDDPECVAKSFP 397
Query: 508 DYFDVLDSVTKR 519
+FDVL+ +
Sbjct: 398 SFFDVLERLGAN 409
Score = 34.2 bits (79), Expect = 0.16
Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 45/176 (25%)
Query: 89 SGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSE---DIHHMLDALKKLGLNVEEDFA 145
+PG S + L AA++ G ++NL + D ++ L+++G ++E
Sbjct: 215 PQGYDVPGDYSSAAFFLAAAAITGGRVTLENLGINPTQGDK-AIIIVLEEMGADIE--VE 271
Query: 146 MKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMR- 204
IVEG GL + I+ T AV AA +GV R+
Sbjct: 272 EDDLIVEGASGLKGIKIDMDDMIDEL----------PTLAVLAA------FAEGVTRITG 315
Query: 205 ---------ERPIGDLVTGLKQLGADV----DCILGTNCPPVRINGKGGLPGGKVK 247
+R I + L++LG DV D + I GK L G V
Sbjct: 316 AEELRVKESDR-IAAIAEELRKLGVDVEEFEDGLY--------IRGKKELKGAVVD 362
>gnl|CDD|215834 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate
1-carboxyvinyltransferase).
Length = 415
Score = 476 bits (1228), Expect = e-166
Identities = 203/435 (46%), Positives = 267/435 (61%), Gaps = 23/435 (5%)
Query: 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
+ ++G V +PGSKS S+R LLLAAL+ G + + NLL S+D ML+AL+ LG V
Sbjct: 1 VTGGSRLNGEVKVPGSKSNSHRALLLAALAAGESTITNLLDSDDTRLMLEALRALGAEVI 60
Query: 142 EDFAMK-RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGV 200
E K IVEG GG F E+ L LGN+GTAMRPL A + +L G
Sbjct: 61 ELDEEKTVVIVEGLGGSFEAPY----ELVLDLGNSGTAMRPLLGR--LALQSGEVVLTGD 114
Query: 201 PRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTAL 260
+ ERPI L+ GL+QLGA+++ G P+++ G L G V + G +SSQ++T+L
Sbjct: 115 DSIGERPIDRLLDGLRQLGAEIEYREGYGYAPLKVRG---LKLGGVHIDGSISSQFVTSL 171
Query: 261 LMAAP-LALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
LM A LA G IE L S PY++ T ++ +FG +E S + +I+GGQK
Sbjct: 172 LMLAALLAEGTTIIE---NLASEPYIDDTENMLNKFGAKIEGSGTETSIYIKGGQKLPG- 227
Query: 320 GNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
VEGD SSA+YF+A AA+TGGTV VE G +SLQGD E+LEKMGA++T E+S
Sbjct: 228 VEYRVEGDRSSAAYFLAAAAITGGTVKVENVGINSLQGDRAADEILEKMGAEITQGEDSD 287
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMI 439
V GPP LR +DV+MN PD A T AV A FA+G + I ++ RVKET+R+
Sbjct: 288 IVVGPP-------GLRGIDVDMNTAPDPAPTTAVQAAFAEGTSRIEGISELRVKETDRLF 340
Query: 440 AICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKD 498
A+ TELRKLGA VEEGPD +IT +LK A +D+Y DHR AMAF+LA A+ V I D
Sbjct: 341 AMATELRKLGAEVEEGPDGLIITAVVELKGAEVDSYGDHRAAMAFALAGLVAEGEVIIDD 400
Query: 499 PSCTRKTFPDYFDVL 513
P CT K+FPD+F+ L
Sbjct: 401 PECTDKSFPDFFEKL 415
>gnl|CDD|223206 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino
acid transport and metabolism].
Length = 428
Score = 465 bits (1199), Expect = e-162
Identities = 180/447 (40%), Positives = 257/447 (57%), Gaps = 23/447 (5%)
Query: 76 KASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKK 135
++ + GTV PGSKS+S+R LLLAAL+EG + + NLL SED L+AL+
Sbjct: 1 MEKLTLVVKPSPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLDSEDTLATLEALRA 60
Query: 136 LGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSY 195
LG +E++ +V G GG L GN+GT +R LT + +
Sbjct: 61 LGARIEKEGD--TLVVRGTGGELK-----EPPAVLDCGNSGTTLRLLTGLLALGSPGET- 112
Query: 196 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQ 255
+L G +R+RP+G LV L+QLGA +D G P+ I KGGL GG+V++ G +SSQ
Sbjct: 113 VLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTI--KGGLKGGEVEIDGPVSSQ 170
Query: 256 YLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315
+++LL+ APL I + L S PY++ TL +++ FGV VE+ RF+I GGQK
Sbjct: 171 QVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEG--YRFYIPGGQK 228
Query: 316 YKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 375
PG+ V GD SSA++F+A AA+T + + D +VLEKMGA +
Sbjct: 229 LT-PGDYDVPGDYSSAAFFLAAAAITPRSTGITLKNVQPNPTDKGILDVLEKMGADIEIG 287
Query: 376 ENSV-TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKE 434
++SV V G L+ ++V+M+ MPD+A TLAV+A FA+G T IR+ RVKE
Sbjct: 288 DDSVLRVRGSGE-------LKGIEVDMDDMPDLAPTLAVLAAFAEGTTRIRNAEELRVKE 340
Query: 435 TERMIAICTELRKLGATVEEGPDYCVITPPEKLK-VAAIDTYDDHRMAMAFSLAA-CADV 492
++R+ A+ TELRKLG VEE D +IT KLK +D+Y DHR+AMAF++A ++
Sbjct: 341 SDRIAAMATELRKLGVEVEETEDGLIITGGTKLKGAGTVDSYGDHRIAMAFAVAGLLSEG 400
Query: 493 PVTIKDPSCTRKTFPDYFDVLDSVTKR 519
V I D C K+FP +F+ L S+ R
Sbjct: 401 GVRIDDAECVAKSFPGFFEDLASLGAR 427
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
dehydrogenase/3-phosphoshikimate
1-carboxyvinyltransferase; Provisional.
Length = 673
Score = 415 bits (1068), Expect = e-139
Identities = 236/434 (54%), Positives = 291/434 (67%), Gaps = 17/434 (3%)
Query: 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
L P GTV LPGSKS+SNR+LLLAAL+EG T V NLL S+D MLDAL KLG+ +
Sbjct: 245 LGPFSHAQGTVRLPGSKSISNRVLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLS 304
Query: 142 EDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
D +V G G F +LFLGNAGTA+RPLTAA+ GG Y + GVP
Sbjct: 305 RD--GGTCVVGGTRGAF-----TAKTADLFLGNAGTAVRPLTAALAVNGGE--YRIHGVP 355
Query: 202 RMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALL 261
RM ERPIGDLV GL+Q+GA +D PP+RI +++ G +SSQ+LTALL
Sbjct: 356 RMHERPIGDLVDGLRQIGARIDYEGNEGFPPLRIRPATISVDAPIRVRGDVSSQFLTALL 415
Query: 262 MAAPLAL---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKS 318
M PL G +EI +LIS PY+E+T+KLM RFGV VE D W RF + G +Y+S
Sbjct: 416 MTLPLVKAKDGASVVEIDGELISKPYIEITIKLMARFGVTVER-DGWQRFTVPAGVRYRS 474
Query: 319 PGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS 378
PG VEGDASSASYF+A A+ GG + VEG G +S+QGDV FA L +MGA VT ++
Sbjct: 475 PGTIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDW 534
Query: 379 VTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERM 438
+ V G D +GR L +D++ N +PD AMT+AV ALFADGP+ +R++ SWRVKET+R+
Sbjct: 535 IEVRGIGHD-HGR--LAPIDMDFNLIPDAAMTIAVAALFADGPSTLRNIGSWRVKETDRI 591
Query: 439 IAICTELRKLGATVEEGPDYCVITPPEKLKV-AAIDTYDDHRMAMAFSLAACADVPVTIK 497
A+ TELRK+GATVEEG DY V+TPP +L A+IDTYDDHRMAM FSL + VPV I
Sbjct: 592 AAMATELRKVGATVEEGADYLVVTPPAQLTPNASIDTYDDHRMAMCFSLVSLGGVPVRIN 651
Query: 498 DPSCTRKTFPDYFD 511
DP C KTFPDYFD
Sbjct: 652 DPKCVGKTFPDYFD 665
>gnl|CDD|238795 cd01554, EPT-like, Enol pyruvate transferases family includes EPSP
synthases and UDP-N-acetylglucosamine enolpyruvyl
transferase. Both enzymes catalyze the reaction of
enolpyruvyl transfer.
Length = 408
Score = 338 bits (867), Expect = e-112
Identities = 127/433 (29%), Positives = 211/433 (48%), Gaps = 29/433 (6%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+ G + +PG KS+S+R L+ A+L+EG T V N+L ED+ + L+ LG+ +E+
Sbjct: 1 LHGIIRVPGDKSISHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKDG-- 58
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERP 207
++G G K + L LGN+GTA+R ++ + A + L G + +RP
Sbjct: 59 VITIQGVGM--AGLKA--PQNALNLGNSGTAIRLISGVLAGADFEVE--LFGDDSLSKRP 112
Query: 208 IGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLA 267
+ + LK++GA + + PP+ GK G S+Q +AL+ AA LA
Sbjct: 113 MDRVTLPLKKMGASISGQEERDLPPLLKGGK--NLGPIHYEDPIASAQVKSALMFAALLA 170
Query: 268 LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327
G I P + T +++ FG + + +QG QK V GD
Sbjct: 171 KGETVIIE---AAKEPTINHTENMLQTFGGHIS-VQGTKKIVVQGPQKLTGQ-KYVVPGD 225
Query: 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRD 387
SSA++F+ AA+ G + ++ G + +VL MGAK+ E++++V
Sbjct: 226 ISSAAFFLVAAAIAPGRLVLQNVGINE--TRTGIIDVLRAMGAKIEIGEDTISVE----- 278
Query: 388 PYGRKHLRAVDVNMN---KMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTE 444
L+A ++ ++ D +A++AL A G T I+D +VKET+R+ + E
Sbjct: 279 ---SSDLKATEICGALIPRLIDELPIIALLALQAQGTTVIKDAEELKVKETDRIFVVADE 335
Query: 445 LRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTR 503
L +GA +E D +I EKL A ++T+ DHR+ M +LAA AD V +
Sbjct: 336 LNSMGADIEPTADGMIIKGKEKLHGARVNTFGDHRIGMMTALAALVADGEVELDRAEAIN 395
Query: 504 KTFPDYFDVLDSV 516
++P +FD L+S+
Sbjct: 396 TSYPSFFDDLESL 408
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 133 bits (336), Expect = 6e-33
Identities = 128/449 (28%), Positives = 214/449 (47%), Gaps = 48/449 (10%)
Query: 81 VLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNV 140
+ P + GT+ +PG KS+S+R ++L +L+EG T V+ L ED L A + +G+ +
Sbjct: 305 SVLPGGAVKGTIRVPGDKSISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVI 364
Query: 141 EEDFAMKRAIVEGCG--GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILD 198
E R + G G GL K G L++GN+GT+MR L+ + A + +L
Sbjct: 365 EGPHN-GRVTIHGVGLHGL----KAPPG--PLYMGNSGTSMRLLSGLL--AAQSFDSVLT 415
Query: 199 GVPRMRERPIGDLVTGLKQLGADVDCILGTNC-PPVRINGKGGLPGGKVKLSGKLSSQYL 257
G + +RP+ + L+++GA ++ G PP+ I G L G L S+Q
Sbjct: 416 GDASLSKRPMERVAKPLREMGAVIET--GEEGRPPLSIRGGQRLKGIHYDLPMA-SAQVK 472
Query: 258 TALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMER----FGVFVEHSDSWDRFFIQGG 313
+ LL+A A G SV T ER FG V+ + ++GG
Sbjct: 473 SCLLLAGLYAEGET---------SVTEPAPTRDHTERMLRGFGYPVKVEG--NTISVEGG 521
Query: 314 QKYKSPGNAFVEGDASSASYFVAGAAVTGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKV 372
K + + V D SSA++F+ A++ G+ +T+E G + + ++L+ MGA +
Sbjct: 522 GKLTA-TDIEVPADISSAAFFLVAASIAEGSELTLEHVGINPTR--TGVIDILKLMGADI 578
Query: 373 TWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLA--------VVALFADGPTAI 424
T EN V G +P +R + +P+ + LA V A A+G T +
Sbjct: 579 T-LENEREVGG---EPVADIRVRGARLKGIDIPEDQVPLAIDEFPVLFVAAACAEGRTVL 634
Query: 425 RDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAF 484
RVKE++R+ + L+ LG E PD +I ++++ DHR+AM+F
Sbjct: 635 TGAEELRVKESDRIQVMADGLKTLGIDCEPTPDGIIIEGGI-FGGGEVESHGDHRIAMSF 693
Query: 485 SLAAC-ADVPVTIKDPSCTRKTFPDYFDV 512
S+A+ A P+TI D + +FP++ ++
Sbjct: 694 SVASLRASGPITIHDCANVATSFPNFLEL 722
>gnl|CDD|238794 cd01553, EPT_RTPC-like, This domain family includes the
Enolpyruvate transferase (EPT) family and the RNA 3'
phosphate cyclase family (RTPC). These 2 families differ
in that EPT is formed by 3 repeats of an alpha-beta
structural domain while RTPC has 3 similar repeats with
a 4th slightly different domain inserted between the 2nd
and 3rd repeat. They evidently share the same active
site location, although the catalytic residues differ.
Length = 211
Score = 106 bits (267), Expect = 1e-26
Identities = 49/216 (22%), Positives = 70/216 (32%), Gaps = 41/216 (18%)
Query: 325 EGDASSASYFVAGAAVTGGTVTVEGCGTSS-----LQGDVKFAEVLEKM-GAKVTWTENS 378
+G F+ AA++GG +TV G L+ + F + LEK+ GA V E
Sbjct: 7 KGGGQILRSFLVLAAISGGPITVTGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELG 66
Query: 379 VTVTGPPRDPYGRKHLRAVDVNMN-----KMPDVAMTLAVVALFADGPTAIRDVASWRV- 432
R + +R DV DV T+ + LFA GPT +
Sbjct: 67 SD-----RISFRPGTVRGGDVRFAIGSAGSCTDVLQTILPLLLFAKGPTRLTVTGGTDNP 121
Query: 433 ---KETERMIAICTELRKLGATVEEGPD------------YCVITPPEKLKVAAIDTYDD 477
+ EL K+GA EE ++P EKL A +
Sbjct: 122 SAPPADFIRFVLEPELAKIGAHQEETLLRHGFYPAGGGVVATEVSPVEKLNTAQL----- 176
Query: 478 HRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVL 513
R + L A + F VL
Sbjct: 177 -RQLVLPMLLA---SGAVEFTVAHPSCHLLTNFAVL 208
>gnl|CDD|238796 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate
+ UDP-N-acetyl-D-glucosamine = phosphate +
UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This
enzyme is of interest as a potential target for
anti-bacterial agents. The only other known enolpyruvyl
transferase is the related
5-enolpyruvylshikimate-3-phosphate synthase.
Length = 400
Score = 84.4 bits (210), Expect = 1e-17
Identities = 112/434 (25%), Positives = 175/434 (40%), Gaps = 92/434 (21%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+SG V + G+K+ + IL A L++ + N+ D+ M++ L+ LG VE +
Sbjct: 1 LSGEVRISGAKNAALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEGENT 60
Query: 148 RAI----VEGCGGLFPLAKQQTGEIELFLGNAGTAMRPL-----TAAVTAAGG-NLSYIL 197
I + + L ++ I L LG PL A V+ GG +
Sbjct: 61 LVIDASNINSTEAPYELVRKMRASI-LVLG-------PLLARFGEARVSLPGGCAI---- 108
Query: 198 DGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQY 256
G RP+ DL + GL+ LGA ++ + V G L G ++ L S
Sbjct: 109 -G-----ARPV-DLHLKGLEALGAKIE--IEDGY--VEAKAAGRLKGARIYL--DFPS-- 153
Query: 257 LTA---LLMAAPLALGNVEI-------EIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD 306
+ A ++MAA LA G I EI+D L + L M G +E + + D
Sbjct: 154 VGATENIMMAAVLAEGTTVIENAAREPEIVD-LANF------LNKM---GAKIEGAGT-D 202
Query: 307 RFFIQG-----GQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKF 361
I+G G ++ V D A F+ AA+TGG +TVE L+
Sbjct: 203 TIRIEGVERLHGAEHT------VIPDRIEAGTFLVAAAITGGDITVENVIPEHLEA---V 253
Query: 362 AEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALF 417
L +MGAK+ E+ + V G +AVD+ P D+ +
Sbjct: 254 LAKLREMGAKIEIGEDGIRVDGDGGRL------KAVDIETAPYPGFPTDLQAQFMALLTQ 307
Query: 418 ADGPTAIRDVASWRVKETERMIAICTELRKLGATVE-EGPDYCVITPPEKLKVAAIDTYD 476
A+G + I + + E R + + EL ++GA ++ EG +I KL A +
Sbjct: 308 AEGTSVITE----TIFE-NRFMHV-DELNRMGADIKVEGNT-AIIRGVTKLSGAPVMA-T 359
Query: 477 DHRMAMAFSLAACA 490
D R A LA A
Sbjct: 360 DLRAGAALVLAGLA 373
Score = 35.5 bits (83), Expect = 0.060
Identities = 75/328 (22%), Positives = 118/328 (35%), Gaps = 83/328 (25%)
Query: 125 DIHHMLDALKKLGLNVEEDFAMKRAIVEG--CGGLFPLAKQQTGEIELFLGNAGTAMRPL 182
D+H L L+ LG +E + A G G L G E N +
Sbjct: 114 DLH--LKGLEALGAKIEIEDGYVEAKAAGRLKGARIYLDFPSVGATE----NI------M 161
Query: 183 TAAVTAAGGNLSYILDGVPRM----RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGK 238
AAV A +G + RE I DL L ++GA ++ GT+ +RI G
Sbjct: 162 MAAVLA---------EGTTVIENAAREPEIVDLANFLNKMGAKIEGA-GTDT--IRIEGV 209
Query: 239 GGLPGGKVKLSGKLSSQYLTA--LLMAAPLALGNVEIE--IIDKLISVPYVEMTLKLMER 294
L G + + + A L+AA + G++ +E I + L +V L +
Sbjct: 210 ERLHGAEH----TVIPDRIEAGTFLVAAAITGGDITVENVIPEHLEAV------LAKLRE 259
Query: 295 FGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASY----------FVAGAAVTGGT 344
G +E + R GG + K+ D +A Y F+A GT
Sbjct: 260 MGAKIEIGEDGIRVDGDGG-RLKAV-------DIETAPYPGFPTDLQAQFMALLTQAEGT 311
Query: 345 VTVEGCGTSSL-QGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNK 403
+ T ++ + + L +MGA + N+ + G L V
Sbjct: 312 SVI----TETIFENRFMHVDELNRMGADIKVEGNTAIIRGV-------TKLSGAPV---M 357
Query: 404 MPD----VAMTLAVVALFADGPTAIRDV 427
D A+ LA L A+G T I ++
Sbjct: 358 ATDLRAGAALVLA--GLAAEGETIISNI 383
>gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 416
Score = 71.5 bits (176), Expect = 2e-13
Identities = 112/431 (25%), Positives = 170/431 (39%), Gaps = 75/431 (17%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED---F 144
+SG VT+ G+K+ + I+ L++ + N+ D+ LD L+ LG VE D
Sbjct: 12 LSGEVTISGAKNAALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDNNTL 71
Query: 145 AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPL-----TAAVTAAGGNLSYILDG 199
+ + + L ++ I L LG PL A V+ GG
Sbjct: 72 EINTPNINSTEAPYELVRKMRASI-LVLG-------PLLARFGKAVVSLPGGCA------ 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
+ RP+ + GLK LGA++ G V + KG L G + L K+S
Sbjct: 118 ---IGARPVDLHLKGLKALGAEIVIEDGY----VYASAKGRLVGAHIVLD-KVSVGATEN 169
Query: 260 LLMAAPLALGNV-------EIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG 312
++MAA LA G E EI+D L L M G + + S + I+G
Sbjct: 170 IIMAAVLAEGTTVIENAAREPEIVD-LCEF------LNKM---GAKITGAGS-NTITIEG 218
Query: 313 GQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKV 372
+K V D A F+ AA+TGG +T++ L+ L ++GA+V
Sbjct: 219 VEKLHG-TEHSVIPDRIEAGTFLVAAAITGGEITIKNVRPDHLRA---VLAKLREIGAEV 274
Query: 373 TWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRDVA 428
EN + V +K L+AVD+ P D+ + A+G + I +
Sbjct: 275 EVDENGIRVD------MRQKRLKAVDIETLPYPGFPTDLQAQFMALLSQAEGTSVITE-- 326
Query: 429 SWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLK---VAAIDTYDDHRMAMAFS 485
V E M EL ++GA ++ + VI E+L V A D R A
Sbjct: 327 --TVFENRFMHV--DELIRMGANIKLEGNTAVIHGVEQLSGAEVMATDL----RAGAALV 378
Query: 486 LAACADVPVTI 496
LA TI
Sbjct: 379 LAGLVAEGETI 389
Score = 46.1 bits (110), Expect = 3e-05
Identities = 83/401 (20%), Positives = 139/401 (34%), Gaps = 94/401 (23%)
Query: 73 KQSKASEIVLQPI--REISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
++ +AS +VL P+ R V+LPG ++ R + D+H L
Sbjct: 89 RKMRASILVLGPLLARFGKAVVSLPGGCAIGARPV-------------------DLH--L 127
Query: 131 DALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAG 190
LK LG + + A +G + I L + G + AAV A G
Sbjct: 128 KGLKALGAEIVIEDGYVYASAKG--------RLVGAHIVLDKVSVGATENIIMAAVLAEG 179
Query: 191 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSG 250
+ +++ R E I DL L ++GA I G + I G L G + +
Sbjct: 180 ---TTVIENAAR--EPEIVDLCEFLNKMGAK---ITGAGSNTITIEGVEKLHGTEHSV-- 229
Query: 251 KLSSQYLTA-LLMAAPLALGNVEIE--IIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 307
+ + L+AA + G + I+ D L +V L + G VE ++ R
Sbjct: 230 -IPDRIEAGTFLVAAAITGGEITIKNVRPDHLRAV------LAKLREIGAEVEVDENGIR 282
Query: 308 FFIQGGQKYKSPGNAFVEGDASSA------SYFVAGAAVTGGTVTVEGCGTSSLQGDVKF 361
+ K +E + F+A + GT + + +
Sbjct: 283 VD----MRQKRLKAVDIETLPYPGFPTDLQAQFMALLSQAEGTSVIT---ETVFENRFMH 335
Query: 362 AEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDV--AMTLAVVALFAD 419
+ L +MGA + N+ + G + L +V D+ L + L A+
Sbjct: 336 VDELIRMGANIKLEGNTAVIHGVEQ-------LSGAEV---MATDLRAGAALVLAGLVAE 385
Query: 420 GPTAIRDV-------ASWRVKETERMIAICTELRKLGATVE 453
G T + +V K LR LGA +E
Sbjct: 386 GETIVHNVYHLDRGYEDLEEK-----------LRALGAKIE 415
Score = 32.6 bits (75), Expect = 0.45
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 306 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVK-FAEV 364
D+ ++GG+ G + G ++A +A +T VT+ S DVK ++
Sbjct: 2 DKLVVEGGKPLS--GEVTISGAKNAALPIIAATLLTDEPVTLTNVPDLS---DVKTTLDL 56
Query: 365 LEKMGAKVTWTENSVTVTGPP 385
L +GA+V N++ + P
Sbjct: 57 LRNLGARVERDNNTLEINTPN 77
>gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase
[Cell envelope biogenesis, outer membrane].
Length = 421
Score = 66.4 bits (163), Expect = 1e-11
Identities = 104/443 (23%), Positives = 171/443 (38%), Gaps = 110/443 (24%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
++G VT+ G+K+ + +L L++ + N+ D+ ML+ L+ LG VE D
Sbjct: 12 LNGEVTISGAKNAALPLLAATLLADEPVTLTNVPDLSDVETMLELLRNLGAKVERD---- 67
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRP------LTAAVTAAGGNLSYILDGVP 201
GE+E+ N + P + A++ G L+
Sbjct: 68 ----------------GDGELEIDAPNINSTEAPYELVRKMRASILVLGPLLA------- 104
Query: 202 RMRE-------------RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVK 247
R + RP+ DL + GL+ LGA+++ I + + GL G +
Sbjct: 105 RFGKAKVSLPGGCAIGARPV-DLHLKGLEALGAEIE-IEHGY---IEASAPKGLKGAHIY 159
Query: 248 LSGKLSSQYLTA---LLMAAPLALGNVEI-------EIIDKLISVPYVEMTLKLMERFGV 297
L K+S + A ++MAA LA G I EI+D L + L M G
Sbjct: 160 LD-KVS---VGATENIMMAAVLAEGTTVIENAAREPEIVD-LANF------LNKM---GA 205
Query: 298 FVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQG 357
+E + + I+G +K V D A F+ AA+TGG VT+E L+
Sbjct: 206 KIEGAGT-STITIEGVEKLHG-AEHSVIPDRIEAGTFLVAAAITGGDVTIENVRPEHLEA 263
Query: 358 DVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP----DVAMTLAV 413
L + G + E+ + V + L+AVD+ P D+
Sbjct: 264 ---VLAKLREAGVDIEEGEDGIRVDMEGKR------LKAVDIKTLPYPGFPTDMQAQFMA 314
Query: 414 VALFADGPTAIRDVASWRVKET---ERMIAICTELRKLGATVEEGPDYCVITPPEKLK-- 468
+ A+G + + ET R + + EL ++GA ++ + VI E+L
Sbjct: 315 LLTVAEGTS--------VITETIFENRFMHV-PELIRMGANIKLEGNTAVIQGVEQLSGA 365
Query: 469 -VAAIDTYDDHRMAMAFSLAACA 490
V A D R + A LA
Sbjct: 366 PVMATDL----RASAALVLAGLV 384
Score = 43.3 bits (103), Expect = 2e-04
Identities = 66/263 (25%), Positives = 100/263 (38%), Gaps = 71/263 (26%)
Query: 234 RINGKGGLPGGKVKLSG-KLSSQYLTALLMAAPLALGNVEIEIIDKLISVPY---VEMTL 289
I G G G+V +SG K ++ LL A LA V + +VP VE L
Sbjct: 5 IIEG-GNPLNGEVTISGAKNAA---LPLLAATLLADEPVTLT------NVPDLSDVETML 54
Query: 290 KLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASS---------------ASYF 334
+L+ G VE D G+ +E DA + AS
Sbjct: 55 ELLRNLGAKVE----RD-------------GDGELEIDAPNINSTEAPYELVRKMRASIL 97
Query: 335 VAGAAVT-GGTVTVE---GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYG 390
V G + G V GC + D+ + LE +GA++ + + P
Sbjct: 98 VLGPLLARFGKAKVSLPGGCAIGARPVDLHL-KGLEALGAEIEIEHGYIEASAP------ 150
Query: 391 RKHLRAVDVNMNKMPDVAMT----LAVVALFADGPTAIRDVASWRVKETERMIAICTELR 446
K L+ + ++K V T +A A+ A+G T I + A +E E ++ + L
Sbjct: 151 -KGLKGAHIYLDK-VSVGATENIMMA--AVLAEGTTVIENAA----REPE-IVDLANFLN 201
Query: 447 KLGATVE-EGPDYCVITPPEKLK 468
K+GA +E G I EKL
Sbjct: 202 KMGAKIEGAGTSTITIEGVEKLH 224
Score = 39.8 bits (94), Expect = 0.003
Identities = 61/278 (21%), Positives = 97/278 (34%), Gaps = 78/278 (28%)
Query: 204 RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKL------SGKLSSQYL 257
RE I DL L ++GA I G + I G L G + + +G
Sbjct: 189 REPEIVDLANFLNKMGAK---IEGAGTSTITIEGVEKLHGAEHSVIPDRIEAG------- 238
Query: 258 TALLMAAPLALGNVEIE--IIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315
L+AA + G+V IE + L +V L + GV +E + R ++ G++
Sbjct: 239 -TFLVAAAITGGDVTIENVRPEHLEAV------LAKLREAGVDIEEGEDGIRVDME-GKR 290
Query: 316 YKSPGNAFVEGDASSASY----------FVAGAAVTGGTVTVEGCGTSSL-QGDVKFAEV 364
K+ D + Y F+A V GT + T ++ +
Sbjct: 291 LKAV-------DIKTLPYPGFPTDMQAQFMALLTVAEGTSVI----TETIFENRFMHVPE 339
Query: 365 LEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDV--AMTLAVVALFADGPT 422
L +MGA + N+ + G + L V D+ + L + L A+G T
Sbjct: 340 LIRMGANIKLEGNTAVIQGVEQ-------LSGAPV---MATDLRASAALVLAGLVAEGET 389
Query: 423 AIRDV-------ASWRVKETERMIAICTELRKLGATVE 453
+ V K LR LGA +E
Sbjct: 390 IVNRVYHLDRGYERLEEK-----------LRALGAKIE 416
Score = 30.9 bits (71), Expect = 1.7
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 306 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKF-AEV 364
D+ I+GG G + G ++A +A + VT+ S DV+ E+
Sbjct: 2 DKLIIEGGNPLN--GEVTISGAKNAALPLLAATLLADEPVTLTNVPDLS---DVETMLEL 56
Query: 365 LEKMGAKVTWTENSVTVTGPPRD-----PYGR-KHLRA 396
L +GAKV + P PY + +RA
Sbjct: 57 LRNLGAKVERDGDGELEIDAPNINSTEAPYELVRKMRA 94
>gnl|CDD|236486 PRK09369, PRK09369, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Validated.
Length = 417
Score = 61.2 bits (150), Expect = 5e-10
Identities = 119/460 (25%), Positives = 175/460 (38%), Gaps = 145/460 (31%)
Query: 88 ISGTVTLPGSKSLSNRIL-LLAA--LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDF 144
+SG VT+ G+K N L +LAA L+E + N+ D+ M++ L+ LG VE F
Sbjct: 12 LSGEVTISGAK---NAALPILAASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVE--F 66
Query: 145 AMKRAIVEGCGGL------FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILD 198
+ + + L K+ I L LG PL A
Sbjct: 67 DGNGTVTIDASNINNTEAPYELVKKMRASI-LVLG-------PLLA-------------- 104
Query: 199 GVPRMRE-------------RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244
R E RP+ DL + GL+ LGA+++ G V G L G
Sbjct: 105 ---RFGEAKVSLPGGCAIGARPV-DLHLKGLEALGAEIEIEHGY----VEAKADGRLKGA 156
Query: 245 KVKLSGKLSSQYLTA---LLMAAPLALGNVEI-------EIIDKLISVPYVEMTLKLMER 294
+ L S + A +LMAA LA G I EI+D L + L M
Sbjct: 157 HIVLD-FPS---VGATENILMAAVLAEGTTVIENAAREPEIVD-LANF------LNKM-- 203
Query: 295 FGVFVEHSDSWDRFFIQG-----GQKYKSPGNAFVEGD---ASSASYFVAGAAVTGGTVT 346
G + + + D I+G G ++ V D A ++ VA AA+TGG VT
Sbjct: 204 -GAKISGAGT-DTITIEGVERLHGAEHT------VIPDRIEA--GTFLVA-AAITGGDVT 252
Query: 347 VEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNK--- 403
+ G L+ L + GA++ E+ + V P R L+AVD+ K
Sbjct: 253 IRGARPEHLEA---VLAKLREAGAEIEEGEDGIRVDMPGR-------LKAVDI---KTAP 299
Query: 404 ----MPD---VAMTLAVVALFADGPTAIRDVASWRVKET---ERMIAICTELRKLGATVE 453
D M L A+G T++ + ET R + + EL ++GA +E
Sbjct: 300 YPGFPTDMQAQFMALLTQ---AEG-TSV-------ITETIFENRFMHV-PELIRMGADIE 347
Query: 454 EGPDYCVITPPEKLK---VAAIDTYDDHRMAMAFSLAACA 490
V+ EKL V A D R + + LA
Sbjct: 348 VDGHTAVVRGVEKLSGAPVMATDL----RASASLVLAGLV 383
Score = 30.0 bits (69), Expect = 2.9
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 16/46 (34%)
Query: 105 LLLAALS-EGTTVVDNLLSSEDIHHMLD--------ALKKLGLNVE 141
L+LA L EGTT+VD I+H LD L+ LG ++E
Sbjct: 377 LVLAGLVAEGTTIVDR------IYH-LDRGYERIEEKLRALGADIE 415
Score = 30.0 bits (69), Expect = 2.9
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 16/71 (22%)
Query: 361 FAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD----VAMTLAVVAL 416
L +MGA + ++ V G + L V D ++ LA L
Sbjct: 335 HVPELIRMGADIEVDGHTAVVRGVEK-------LSGAPV---MATDLRASASLVLA--GL 382
Query: 417 FADGPTAIRDV 427
A+G T + +
Sbjct: 383 VAEGTTIVDRI 393
>gnl|CDD|183779 PRK12830, PRK12830, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Reviewed.
Length = 417
Score = 44.1 bits (105), Expect = 1e-04
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 26/150 (17%)
Query: 332 SYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGR 391
+Y + AA GG VT+ L+ F LE+MG +V E+S+ V +
Sbjct: 237 TYMILAAA-CGGGVTINNVIPEHLES---FIAKLEEMGVRVEVNEDSIFV-------EKQ 285
Query: 392 KHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRD-VASWRVKETERMIAICTELR 446
+L+AVD+ P D+ L + L A+G + + D + R K + EL+
Sbjct: 286 GNLKAVDIKTLPYPGFATDLQQPLTPLLLKANGRSVVTDTIYEKRFKHVD-------ELK 338
Query: 447 KLGATVEEGPDYCVITPPEKL---KVAAID 473
++GA ++ +IT P KL KV A D
Sbjct: 339 RMGANIKVEGRSAIITGPSKLTGAKVKATD 368
Score = 33.7 bits (78), Expect = 0.23
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 143
+SG VT+ G+K+ + ++ A L++G +D + D+H ++D L++LG V+ D
Sbjct: 12 LSGEVTISGAKNSAVALIPAAILADGPVTLDGVPDISDVHSLVDILEELGGKVKRD 67
>gnl|CDD|225128 COG2218, FwdC, Formylmethanofuran dehydrogenase subunit C [Energy
production and conversion].
Length = 264
Score = 32.7 bits (75), Expect = 0.40
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 269 GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFI----------QGGQKYKS 318
G EI K +SV + + L + F V DS I + G++ +
Sbjct: 28 GKSAEEI--KALSVYFGNLVEPLGDFFEVEGNGGDSGADTKISIDGDVSRVKRIGERMSA 85
Query: 319 PGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGA 370
G VEGD GA + GG + V G S ++K E+ A
Sbjct: 86 -GEIIVEGDVGMH----VGAGMKGGKIVVNGNADSWAGIEMKGGEIKIFGNA 132
>gnl|CDD|238338 cd00604, IPT_CGTD, IPT domain (domain D) of cyclodextrin
glycosyltransferase (CGTase) and similar enzymes. These
enzymes are involved in the enzymatic hydrolysis of
alpha-1,4 linkages of starch polymers and belong to the
glycosyl hydrolase family 13. Most consist of three
domains (A,B,C) but CGTase is more complex and has two
additional domains (D,E). The function of the IPT/D
domain is unknown.
Length = 81
Score = 29.2 bits (66), Expect = 1.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 342 GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGP 384
G TVT+ G G S G V F ++ ++W++ S+ V P
Sbjct: 14 GNTVTISGEGFGSTGGTVYFGGTAAEV---LSWSDTSIVVEVP 53
>gnl|CDD|188107 TIGR01086, fucA, L-fuculose phosphate aldolase. Members of this
family are L-fuculose phosphate aldolase from various
Proteobacteria, encoded in fucose utilization operons.
Homologs in other bacteria given similar annotation but
scoring below the trusted cutoff may share extensive
sequence similarity but are not experimenally
characterized and are not found in apparent fucose
utilization operons; we consider their annotation as
L-fuculose phosphate aldolase to be tenuous. This model
has been narrowed in scope from the previous version
[Energy metabolism, Sugars].
Length = 214
Score = 31.1 bits (70), Expect = 1.1
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T + + ++ V T K+SKA I+LQ I+ V L + L++ + +LA+L T +
Sbjct: 129 TFGSHKLASYVATGIKESKA--ILLQHHGLIACEVNLEKALWLAHEVEVLASLYLKTLAI 186
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+LS E + +L K GL +EE
Sbjct: 187 TLEVPVLSKEQMAVVLGKFKTYGLRIEE 214
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 30.9 bits (70), Expect = 2.2
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 131 DALKKLGLNVEED---FAMKRAI--VEGCGGLFPLAKQQTGE-----IE-LFLGNAGTAM 179
A ++L VE++ AM++A VE L AK + G +E LF N G +
Sbjct: 375 KAAERLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAYGADQVEFLFSANTGEPV 434
Query: 180 RPLTAAVTAAGGNLSYIL 197
+PL A A+GG LS ++
Sbjct: 435 KPL--AKVASGGELSRVM 450
>gnl|CDD|240523 cd13150, DAXX_histone_binding, Histone binding domain of the
death-domain associated protein (DAXX). DAXX is a
nuclear protein that modulates transcription of various
genes and is involved in cell death and/or the
suppression of growth. DAXX is also a histone chaperone
conserved in Metazoa that acts specifically on histone
H3.3. This alignment models a functional domain of DAXX
that interacts with the histone H3.3-H4 dimer, and in
doing so competes with DNA binding and interactions
between the histone chaperone ASF1/CIA and the H3-H4
dimer.
Length = 198
Score = 29.9 bits (68), Expect = 2.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 504 KTFPDYFDVLDSVTK 518
KTFPD+ D+L V K
Sbjct: 95 KTFPDFHDILKIVQK 109
>gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain. The
UDP-glucose/GDP-mannose dehydrogenases are a small group
of enzymes which possesses the ability to catalyse the
NAD-dependent 2-fold oxidation of an alcohol to an acid
without the release of an aldehyde intermediate.
Length = 99
Score = 28.2 bits (64), Expect = 3.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 199 GVPRMRERPIGDLVTGLKQLGADVD 223
+RE P D++ L + GA+V
Sbjct: 10 NTDDLRESPALDIIEELLEAGAEVV 34
>gnl|CDD|219600 pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain.
Copper amine oxidases catalyze the oxidative
deamination of primary amines to the corresponding
aldehydes, while reducing molecular oxygen to hydrogen
peroxide. These enzymes are dimers of identical
subunits, each comprising four domains. The N-terminal
domain, which is absent in some amine oxidases, consists
of a five-stranded antiparallel beta sheet twisted
around an alpha helix. The D1 domains from the two
subunits comprise the 'stalk' of the mushroom-shaped
dimer, and interact with each other but do not pack
tightly against each other.
Length = 93
Score = 28.0 bits (63), Expect = 3.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 359 VKFAEVLEKMGAKVTWTENSVTVT 382
V + E +GAKV+W + TVT
Sbjct: 7 VPLRAIAEALGAKVSWDGKTKTVT 30
>gnl|CDD|216322 pfam01137, RTC, RNA 3'-terminal phosphate cyclase. RNA cyclases
are a family of RNA-modifying enzymes that are conserved
in all cellular organisms. They catalyze the
ATP-dependent conversion of the 3'-phosphate to the
2',3'-cyclic phosphodiester at the end of RNA, in a
reaction involving formation of the covalent AMP-cyclase
intermediate. The structure of RTC demonstrates that
RTCs are comprised two domain. The larger domain
contains an insert domain of approximately 100 amino
acids.
Length = 330
Score = 29.1 bits (66), Expect = 5.0
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 256 YLTALLMAAPLALGNVEIEII-----DKLISVPYVEM-TLKLMERFGVFVE 300
L LL A G I + V Y+ TL L+E+FG+ E
Sbjct: 95 VLQTLLPLLLFAKGPSRITLKGGTDVPWAPPVDYIRNVTLPLLEKFGIEGE 145
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175).
Length = 820
Score = 29.1 bits (66), Expect = 6.6
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 13/48 (27%)
Query: 384 PPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWR 431
RDP+ LRA+ A+ L VVAL + V
Sbjct: 123 ARRDPFA---LRAL----------ALLLLVVALAFGSSGRVGSVFDAF 157
>gnl|CDD|222472 pfam13954, PapC_N, PapC N-terminal domain. The PapC N-terminal
domain is a structural domain found at the N-terminus of
the E. coli PapC protein. Pili are assembled using the
chaperone usher system. In E.coli this is composed of
the chaperone PapD and the usher PapC. This domain
represents the N-terminal domain from PapC and its
homologues. This domain is involved in substrate
binding.
Length = 145
Score = 28.0 bits (63), Expect = 7.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 133 LKKLGLNVEEDFAMKRAIVEGC 154
L KLG+N+E A++++ E C
Sbjct: 66 LSKLGINIEAFPALQQSNDEQC 87
>gnl|CDD|217162 pfam02645, DegV, Uncharacterized protein, DegV family COG1307. The
structure of this protein revealed a bound fatty-acid
molecule in a pocket between the two protein domains.
The structure indicates that this family has the
molecular function of fatty-acid binding and may play a
role in the cellular functions of fatty acid transport
or metabolism.
Length = 211
Score = 28.3 bits (64), Expect = 7.2
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 248 LSGKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLME 293
+S LS Y +A L V++ +ID K +S+ + L+
Sbjct: 18 ISSGLSGTYQSAKQAKE--ELPGVKVRVIDSKSVSMGLGLLVLEAAR 62
>gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 36K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
are all bacterial and include sohB peptidase and protein
C. These are sometimes referred to as 36K type since
they contain only one domain, unlike E. coli SppA that
also contains an amino-terminal domain. Site-directed
mutagenesis and sequence analysis have shown these SppAs
to be serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad and not the
usual Ser-His-Asp catalytic triad found in the majority
of serine proteases.
Length = 214
Score = 28.3 bits (64), Expect = 7.6
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 322 AFVEGDASSASYFVAGAA---VTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVT 373
AFV G A+SA+Y++A AA V T V G + V ++ LEK G KVT
Sbjct: 78 AFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASH--VDQSKALEKAGLKVT 130
>gnl|CDD|181226 PRK08087, PRK08087, L-fuculose phosphate aldolase; Provisional.
Length = 215
Score = 28.6 bits (64), Expect = 7.7
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKA--TLLQHHGLIACEVNLEKALWLAHEVEVLAQLYLKTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTYGLRIEE 215
>gnl|CDD|235840 PRK06599, PRK06599, DNA topoisomerase I; Validated.
Length = 675
Score = 28.7 bits (65), Expect = 8.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 134 KKLGLNVEEDFAMKRAIVEG 153
KK G++ + DFA K I+EG
Sbjct: 40 KKGGVDPDNDFAPKYEIIEG 59
>gnl|CDD|176452 cd08770, DAP_dppA_3, Peptidase M55, D-aminopeptidase
dipeptide-binding protein family. M55 Peptidase,
D-Aminopeptidase dipeptide-binding protein (dppA; DAP
dppA; EC 3.4.11.-) domain: Peptide transport systems are
found in many bacterial species and generally function
to accumulate intact peptides in the cell, where they
are hydrolyzed. The dipeptide-binding protein (dppA) of
Bacillus subtilis belongs to the dipeptide ABC transport
(dpp) operon expressed early during sporulation. It is a
binuclear zinc-dependent, D-specific aminopeptidase. The
biologically active enzyme is a homodecamer with active
sites buried in its channel. These
self-compartmentalizing proteases are characterized by a
SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the
preferred substrates. Bacillus subtilis dppA is thought
to function as an adaptation to nutrient deficiency;
hydrolysis of its substrate releases D-Ala which can be
used subsequently as metabolic fuel. This family also
contains a number of uncharacterized putative
peptidases.
Length = 263
Score = 28.4 bits (64), Expect = 9.1
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 440 AICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDP 499
C E+RK G +I PE+ + Y DH+ A S A T D
Sbjct: 190 LACKEIRKGVKKALSGLSRDLIELPEEFTLEV--KYKDHKEAYRASFYPGA----TQVDG 243
Query: 500 SCTRKTFPDYFDVL 513
R DYFDVL
Sbjct: 244 YTIRFETADYFDVL 257
>gnl|CDD|113755 pfam04996, AstB, Succinylarginine dihydrolase. This enzyme
transforms N(2)-succinylglutamate into succinate and
glutamate. This is the fifth and last step in arginine
catabolism by the arginine succinyltransferase pathway.
Length = 439
Score = 28.7 bits (64), Expect = 9.8
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 370 AKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMN-----KMPDVAMTLAVVALFAD 419
A WT N+ TV GR HL ++N + PD TL +F D
Sbjct: 102 ASSMWTANAATVLPSADTADGRVHLTTANLNTKLHRSLEAPDTYRTLR--RVFND 154
>gnl|CDD|221320 pfam11927, DUF3445, Protein of unknown function (DUF3445). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 264 to 418
amino acids in length. This protein has a conserved RLP
sequence motif. This protein has two completely
conserved R residues that may be functionally important.
Length = 245
Score = 28.3 bits (64), Expect = 9.8
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 113 GTTVVDNLLSSEDIH----HMLDALKKLGLNVEEDFA 145
G N L+ E D L+ LG V+EDF
Sbjct: 72 GDRTWHNRLTGETFPLTAGDPEDPLETLGRLVQEDFL 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.267 0.0832 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,262,685
Number of extensions: 2605987
Number of successful extensions: 2939
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2763
Number of HSP's successfully gapped: 80
Length of query: 519
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 418
Effective length of database: 6,457,848
Effective search space: 2699380464
Effective search space used: 2699380464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)