RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010070
(519 letters)
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB:
1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A*
1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A*
2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Length = 450
Score = 647 bits (1672), Expect = 0.0
Identities = 245/449 (54%), Positives = 305/449 (67%), Gaps = 16/449 (3%)
Query: 70 TAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHM 129
+ + + LQPI ISG V LPGSKS+SNR LLLAAL+ GTT + NLL S+DI HM
Sbjct: 18 LYFQSNAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHM 77
Query: 130 LDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAA 189
L+AL KLG+N VEG G F +ELFLGNAGTAMRPL AA+
Sbjct: 78 LNALTKLGVNYRLSADKTTCEVEGLGQAFHTT----QPLELFLGNAGTAMRPLAAALCLG 133
Query: 190 GGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLS 249
G+ Y+L G PRM+ERPIG LV L+Q GA ++ + N PP+RI G G L G V +
Sbjct: 134 QGD--YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTG-LQAGTVTID 190
Query: 250 GKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFF 309
G +SSQ+LTA LM+APLA G V I+I+ +L+S PY+++TL +ME+FGV V + D + F
Sbjct: 191 GSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFV 249
Query: 310 IQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMG 369
I GQ Y SPG VEGDASSASYF+A AA+ GG V V G G +S+QGD++FA+ LEKMG
Sbjct: 250 IPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMG 309
Query: 370 AKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVAS 429
A++ W ++ V L AVD++ N +PD AMT+A ALFA G TAIR+V +
Sbjct: 310 AQIEWGDDYVIARRGE--------LNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYN 361
Query: 430 WRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAAC 489
WRVKET+R+ A+ TELRK+GATVEEG D+ VITPP KL AAIDTYDDHRMAM FSL A
Sbjct: 362 WRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAIDTYDDHRMAMCFSLVAL 421
Query: 490 ADVPVTIKDPSCTRKTFPDYFDVLDSVTK 518
+D PVTI DP CT KTFPDYFD +++
Sbjct: 422 SDTPVTINDPKCTSKTFPDYFDKFAQLSR 450
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway,
EPSP synthase, structural genomics; HET: S3P; 1.15A
{Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A*
2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Length = 450
Score = 588 bits (1519), Expect = 0.0
Identities = 129/442 (29%), Positives = 206/442 (46%), Gaps = 33/442 (7%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALS----EGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ TVT+PGSKS +NR L+LAAL+ G + + L S D MLDAL+ LGL
Sbjct: 9 APTPVRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQTLGLR 68
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
V+ V G P + G AGT +R + DG
Sbjct: 69 VDGV--GSELTVSGRIEPGP-------GARVDCGLAGTVLRFVPPLAALGSVP--VTFDG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
+ R RPI L+ L++LG VD P R+ G G L GG V + SSQ+++
Sbjct: 118 DQQARGRPIAPLLDALRELGVAVDG----TGLPFRVRGNGSLAGGTVAIDASASSQFVSG 173
Query: 260 LLMAAPLALGNVEIEII-DKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKS 318
LL++A + ++ L S P++ MT ++ + GV ++ S +R+ ++ G +
Sbjct: 174 LLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDST-PNRWQVRPGPV--A 230
Query: 319 PGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS 378
+E D ++A F++ A V+GGTV + G S+Q +L ++ A V ++S
Sbjct: 231 ARRWDIEPDLTNAVAFLSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIHADSS 290
Query: 379 VTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFAD--GPTAIRDVASWRVKETE 436
+ V GP DV++ + ++ ++A +A A + + +A R ET+
Sbjct: 291 LEVRGPTG-------YDGFDVDLRAVGELTPSVAALAALASPGSVSRLSGIAHLRGHETD 343
Query: 437 RMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTI 496
R+ A+ TE+ +LG T E PD VIT L+ Y DHRMAMA ++ V +
Sbjct: 344 RLAALSTEINRLGGTCRETPDGLVITAT-PLRPGIWRAYADHRMAMAGAIIGLRVAGVEV 402
Query: 497 KDPSCTRKTFPDYFDVLDSVTK 518
D + T KT P++ + +
Sbjct: 403 DDIAATTKTLPEFPRLWAEMVG 424
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural
genomics, protein structure initiative; 2.80A {Bacillus
halodurans}
Length = 455
Score = 268 bits (687), Expect = 1e-84
Identities = 133/451 (29%), Positives = 220/451 (48%), Gaps = 31/451 (6%)
Query: 75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALK 134
++ V+ + + GT+ +PG KS+S+R ++ AL++GTT V+ L D + +
Sbjct: 2 VMENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQ 61
Query: 135 KLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLS 194
KLG+++E+ +R V+G G L +GN+GT R + + +
Sbjct: 62 KLGVSIEQAE--ERVTVKGKGWDGLREPSDI----LDVGNSGTTTRLILGIL--STLPFH 113
Query: 195 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSS 254
++ G + +RP+ + LK +GA +D N P+ I G G L G S+
Sbjct: 114 SVIIGDESIGKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRG-GQLKGIDFHSP-VASA 171
Query: 255 QYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314
Q +A+L+A A G + + + + + T +++E FGV +E I+GGQ
Sbjct: 172 QMKSAILLAGLRAEG--KTSVTEPAKTRDH---TERMLEAFGVNIEKDG--LTVSIEGGQ 224
Query: 315 KYKSPGNAFVEGDASSASYF-VAGAAVTGGTVTVEGCGT-SSLQGDVKFAEVLEKMGAKV 372
+ V GD SSA++F VAGA V +T+ G + G EVL++MGA +
Sbjct: 225 MLT-GQHVVVPGDISSAAFFLVAGAMVPHSRITLTNVGINPTRAG---ILEVLKQMGATL 280
Query: 373 TWTENSVTVTGPPR-DPYGR-KHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDV 427
EN G P D L+ V++ + +P D +AV+A A G T I+D
Sbjct: 281 AM-ENERVQGGEPVADLTIETSVLQGVEIGGDIIPRLIDEIPIIAVLATQASGRTVIKDA 339
Query: 428 ASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA-IDTYDDHRMAMAFSL 486
+VKET R+ + +EL KLGA++ D +I P LK + ++ DHR+ MA ++
Sbjct: 340 EELKVKETNRIDTVVSELTKLGASIHATDDGMIIEGPTPLKGGVTVSSHGDHRIGMAMAI 399
Query: 487 AA-CADVPVTIKDPSCTRKTFPDYFDVLDSV 516
AA A+ PVT++ ++P +FD LD +
Sbjct: 400 AALLAEKPVTVEGTEAIAVSYPSFFDHLDRL 430
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway,
EPSP synthase, glyphosate, PEP, transferase; HET: GPJ
S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2
PDB: 1rf5_A 1rf4_A*
Length = 427
Score = 246 bits (631), Expect = 1e-76
Identities = 115/447 (25%), Positives = 207/447 (46%), Gaps = 40/447 (8%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 143
IR + G + +PG KS+S+R ++ +L+EG T V ++L ED+ + + LG+ +E+
Sbjct: 6 NIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDK 65
Query: 144 FAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
V+G G A Q L +GN+GT++R ++ + AG + + G +
Sbjct: 66 D--GVITVQGVGMAGLKAPQNA----LNMGNSGTSIRLISGVL--AGADFEVEMFGDDSL 117
Query: 204 RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMA 263
+RP+ + LK++G + + PP+R+ G L +L S+Q +AL+ A
Sbjct: 118 SKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELP-IASAQVKSALMFA 176
Query: 264 APLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 323
A A G E II+K + + E ++++FG + + +QG QK
Sbjct: 177 ALQAKG--ESVIIEKEYTRNHTE---DMLQQFGGHLSVDG--KKITVQGPQKLT-GQKVV 228
Query: 324 VEGDASSASYFVAGAAVT-GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS---- 378
V GD SSA++++ + + ++ G + + +V+ MG K+ TE
Sbjct: 229 VPGDISSAAFWLVAGLIAPNSRLVLQNVGINETR--TGIIDVIRAMGGKLEITEIDPVAK 286
Query: 379 ---VTVTGPPRDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVASWRV 432
+ V L+ ++ +P D +A++A A G T I+D +V
Sbjct: 287 SATLIVESSD--------LKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKV 338
Query: 433 KETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAA--CA 490
KET+R+ + L +GA + D +I L A ++T+ DHR+ M ++AA A
Sbjct: 339 KETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVA 398
Query: 491 DVPVTIKDPSCTRKTFPDYFDVLDSVT 517
D V + ++P +FD L+S+
Sbjct: 399 DGEVELDRAEAINTSYPSFFDDLESLI 425
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii}
PDB: 3roi_A* 4egr_A* 3tr1_A
Length = 441
Score = 241 bits (618), Expect = 1e-74
Identities = 135/449 (30%), Positives = 226/449 (50%), Gaps = 28/449 (6%)
Query: 75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALK 134
S A + P + +SG + +PG KS+S+R +LLAA++EG T VD L D M+ AL+
Sbjct: 1 SNAMDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQ 60
Query: 135 KLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLS 194
++G +++ +VEG G A + L GN+GTA+R L+ + AG +
Sbjct: 61 QMGASIQVIEDENILVVEGVGMTGLQAPPEA----LDCGNSGTAIRLLSGLL--AGQPFN 114
Query: 195 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSS 254
+L G ++ RP+ ++ L +GA +D N PP++I G L G +L S+
Sbjct: 115 TVLTGDSSLQRRPMKRIIDPLTLMGAKID--STGNVPPLKIYGNPRLTGIHYQLP-MASA 171
Query: 255 QYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314
Q + LL+A A G + I + S + E +L++ F ++ + GG
Sbjct: 172 QVKSCLLLAGLYARG--KTCITEPAPSRDHTE---RLLKHFHYTLQKDK--QSICVSGGG 224
Query: 315 KYKSPGNAFVEGDASSASYFVAGAAVT-GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVT 373
K K + + GD SSA++F+ A +T G + + G + + + +L+ MGA +
Sbjct: 225 KLK-ANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTR--LGVINLLKMMGADIE 281
Query: 374 WTENSVTVTGPPR-DPYGR-KHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVA 428
+ P D R L+ +D+ +++P D L + A A G T +RD A
Sbjct: 282 V-THYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAA 340
Query: 429 SWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAA 488
RVKET+R+ A+ L+KLG E PD +I L+ +++YDDHR+AMAF++A
Sbjct: 341 ELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQGG-TLEGGEVNSYDDHRIAMAFAVAG 399
Query: 489 -CADVPVTIKDPSCTRKTFPDYFDVLDSV 516
A PV I++ + +FP++ ++ + V
Sbjct: 400 TLAKGPVRIRNCDNVKTSFPNFVELANEV 428
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta
barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A*
2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Length = 445
Score = 236 bits (605), Expect = 1e-72
Identities = 113/453 (24%), Positives = 200/453 (44%), Gaps = 35/453 (7%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ +SGTV +PG KS+S+R + L+ G T + LL ED+ + A++ +G
Sbjct: 5 ATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGAR 64
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
+ ++ I++G G LA + L GNA T R V + G
Sbjct: 65 IRKE--GDTWIIDGVGNGGLLAPEAP----LDFGNAATGCRLTMGLV--GVYDFDSTFIG 116
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
+ +RP+G ++ L+++G V G + PV + G ++ S+Q +A
Sbjct: 117 DASLTKRPMGRVLNPLREMGVQVKSEDG-DRLPVTLRGPKTPTPITYRVP-MASAQVKSA 174
Query: 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVE---HSDSWDRFFIQGGQKY 316
+L+A G +I+ +++ + E K+++ FG + +D ++G K
Sbjct: 175 VLLAGLNTPG--ITTVIEPIMTRDHTE---KMLQGFGANLTVETDADGVRTIRLEGRGKL 229
Query: 317 KSPGNAFVEGDASSASYFVAGAAVT-GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 375
V GD SS ++ + A + G VT+ + + L++MGA +
Sbjct: 230 T-GQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTR--TGLILTLQEMGADIEV- 285
Query: 376 ENSVTVTGPPR-DPYGR-KHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVASW 430
N G D R L+ V V ++ P D LAV A FA+G T + +
Sbjct: 286 INPRLAGGEDVADLRVRSSTLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEEL 345
Query: 431 RVKETERMIAICTELRKLGATVEEGPDYCVIT------PPEKLKVAAIDTYDDHRMAMAF 484
RVKE++R+ A+ L+ G +EG V+ AA+ T+ DHR+AM+F
Sbjct: 346 RVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAVATHLDHRIAMSF 405
Query: 485 SLAA-CADVPVTIKDPSCTRKTFPDYFDVLDSV 516
+ ++ PVT+ D + +FP++ D++ +
Sbjct: 406 LVMGLVSENPVTVDDATMIATSFPEFMDLMAGL 438
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 2e-13
Identities = 78/475 (16%), Positives = 143/475 (30%), Gaps = 142/475 (29%)
Query: 117 VDNLLSSEDIHHMLDALKKLGLNVEE--DFAMKRAIVEGCGGLF-PLAKQQTGEIELFLG 173
D + + D + D K + L+ EE M + V G LF L +Q ++ F+
Sbjct: 26 EDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 174 NAGTAMRP----LTAAVTA-----AGGNLSYI-----LDGVPRM-------RERPIGDLV 212
+R L + + + YI L ++ R +P L
Sbjct: 85 ---EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 213 TGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAP---LALG 269
L +L V I+G G GK ++ + Y M L L
Sbjct: 142 QALLEL---------RPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 270 NVE-----IEIIDKLISVPYVEMTLKLMERFGVFVEHSDS----------WDRFFIQGGQ 314
N +E++ KL ++ R +HS + R ++ +
Sbjct: 191 NCNSPETVLEMLQKL----LYQIDPNWTSR----SDHSSNIKLRIHSIQAELRRLLK-SK 241
Query: 315 KYKSPGNAF-----VEGDASSASYFVAGAA--VTGGTVTVEGCGTSSLQGDVKFAEVLEK 367
Y+ N V+ +A + + F +T V T L L+
Sbjct: 242 PYE---NCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQV----TDFLSAATTTHISLDH 293
Query: 368 MGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLA--VVALFADGPTAIR 425
+T E ++ L+ +D +P +T +++ A +IR
Sbjct: 294 HSMTLTPDE-VKSLL-----------LKYLDCRPQDLPREVLTTNPRRLSIIA---ESIR 338
Query: 426 DVAS----WR---VKETERMIAIC------TELRKLGATVEEGPDY--CVITP-----PE 465
D + W+ + +I E RK+ + + P P
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---------FDRLSVFPPSAHIPT 389
Query: 466 K-LKV--AAIDTYDDHRMA---MAFSLAACADVPVTIKDPSCTRKTFPD-YFDVL 513
L + + D + +SL K P + + P Y ++
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVE--------KQPKESTISIPSIYLELK 436
Score = 52.9 bits (126), Expect = 2e-07
Identities = 50/325 (15%), Positives = 89/325 (27%), Gaps = 82/325 (25%)
Query: 267 ALGNVEIEIIDKLISVPYVEMTLKLM--------ERFGVFVEHSDS------WDRFFIQG 312
L EI+ I ++S V TL+L E FVE +
Sbjct: 45 ILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 313 GQK------YKSPGNAFVEGDASSASYFVA-GAAVT-----------GGTVTVEG---CG 351
Q Y + + A Y V+ V ++G G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 352 TSSLQGDV-KFAEVLEKMGAKVTWTENSVTVTGPPRDPYGR-KHL----RAVDVNMNKMP 405
+ + DV +V KM K+ W + + P + L +D N
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFW----LNL-KNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 406 DVAMTL---------AVVALFA--DGPTA---IRDVASWRVKE----------TERMIAI 441
D + + + L + +V + + T R +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 442 CTELRKLGAT---VEEGPDYCVITPPEKL----KVAAIDTYDDHRMAMAFSLAACADVPV 494
L T ++ +TP E K D R + + + +
Sbjct: 278 TDFLSAATTTHISLDHHSM--TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 495 TIKDPSCTRKTFPDY-FDVLDSVTK 518
+I+D T + D L ++ +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIE 360
Score = 48.3 bits (114), Expect = 6e-06
Identities = 75/534 (14%), Positives = 137/534 (25%), Gaps = 207/534 (38%)
Query: 29 VSAISFRSQSRGCSSSWGLRYNDRLGNNNTV---RTV-RASASVGTAEKQSKASEIVLQP 84
+S I + + + DRL N+N V V R LQP
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR------------------LQP 136
Query: 85 IREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDF 144
++ ++L L V+ I +L
Sbjct: 137 YLKL--------RQALLE-------LRPAKNVL--------IDGVL-------------- 159
Query: 145 AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAV-------TAAGGNLSYIL 197
G G K + V + ++
Sbjct: 160 --------GSG------KTW-----------------VALDVCLSYKVQCKMDFKIFWLN 188
Query: 198 DGVPRMRERPIGDLVTGLKQLGADVDCILGTNC-----PPVRINGKGGLPGGKVKLSGKL 252
++ L++L +D + +RI+ + +L L
Sbjct: 189 LK----NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH------SIQAELRRLL 238
Query: 253 SS-QYLTALLMAAPLALGNV-EIEIIDK-------LISVPYVEMT--LKLMERFGVFVEH 301
S Y LL+ L NV + + L++ + ++T L + ++H
Sbjct: 239 KSKPYENCLLV-----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 302 SDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVT---VEGCGTSSLQGD 358
+ S E T+ +
Sbjct: 294 HSM-----------------TLTPDE--VKSLL---LKYLDCRPQDLPREVLTTNPRRLS 331
Query: 359 VKFAEVLEKMGAKVTWT--------------ENSVTVTGPP--RDPYGRKHLRAV---DV 399
+ AE + TW E+S+ V P R + L +V
Sbjct: 332 I-IAESIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--DRL-SVFPPSA 385
Query: 400 NMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYC 459
+ +P + L+++ W ++ + +L K VE+ P
Sbjct: 386 H---IP--TILLSLI---------------WFDVIKSDVMVVVNKLHKYSL-VEKQPKES 424
Query: 460 VITPPE---KLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYF 510
I+ P +LKV + Y HR S+ ++P T YF
Sbjct: 425 TISIPSIYLELKVKLENEYALHR-----SIVDHYNIPKTFDSDDLIPPYLDQYF 473
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 6e-11
Identities = 80/506 (15%), Positives = 148/506 (29%), Gaps = 167/506 (33%)
Query: 64 ASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSS 123
+ ++ + +E+V + + +S V P +++L L L+E + L
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVE-PSKVGQFDQVLNLC-LTE---FENCYLEG 98
Query: 124 EDIHHMLDALKKLGLNVEEDFAMKRAIVE------GCGG----------LFPLAKQQTGE 167
DIH KL + + +++ LF G
Sbjct: 99 NDIH---ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--GEGN 153
Query: 168 IELFL--GNAGTAMRPLTAAVTAAG-GNLSYILDGVPRMRE-----RP-IGDLVTG---- 214
+L G G GN D +R+ +GDL+
Sbjct: 154 AQLVAIFG----------------GQGN---TDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 215 LKQLGA---DVDCILGTNCPPVR-INGKGGLPGGKVKLSGKLSSQYLTALLMAAPL---- 266
L +L D + + + + P YL ++ ++ PL
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTP----------DKDYLLSIPISCPLIGVI 244
Query: 267 ALGNVEIEIIDKLISVPYVEMTLKLMERFG--------VFVEHSDSWDRF---------- 308
L + + KL+ E+ L G V + +DSW+ F
Sbjct: 245 QLAH--YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 309 -FIQG--GQKYKSPGNAF--------VEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQG 357
F G + P + +E + S ++ + +Q
Sbjct: 303 LFFIGVRCYEA-YPNTSLPPSILEDSLENNEGVPSPMLS----------ISNLTQEQVQ- 350
Query: 358 DVKFAEVLEKMGAKVTWTE-------NS---VTVTGPPRDPYG-RKHLRAV----DVNMN 402
+ + K + + + N + V+GPP+ YG LR ++ +
Sbjct: 351 -----DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 403 KMPDVAMTLAVVALF------------ADGPTAI-RDVA----SWRVKETERMIAI---C 442
++P L F I +D+ S+ K+ I I
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD----IQIPVYD 461
Query: 443 TE----LRKLGATVEEGPDYCVITPP 464
T LR L ++ E C+I P
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLP 487
Score = 33.5 bits (76), Expect = 0.24
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 41/126 (32%)
Query: 325 EGDASSASYFVAG---------AAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 375
+G + + F AG A++ +++E + EV+ G +
Sbjct: 1750 KGLIPADATF-AGHSLGEYAALASL-ADVMSIE---------SL--VEVVFYRGMTM--- 1793
Query: 376 ENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKET 435
+ +V PRD GR + + +N ++ A F+ A++ V K T
Sbjct: 1794 QVAV-----PRDELGRSNYGMIAINPGRV---------AASFSQ--EALQYVVERVGKRT 1837
Query: 436 ERMIAI 441
++ I
Sbjct: 1838 GWLVEI 1843
Score = 32.3 bits (73), Expect = 0.51
Identities = 37/268 (13%), Positives = 61/268 (22%), Gaps = 138/268 (51%)
Query: 284 YVEMTLKLMERFGVFVEHSDSWDR---FFIQGGQKYK-SPGNAFVEGDASSASYFVAGAA 339
M + L + D W+R F Y S + + + +F
Sbjct: 1628 EQGMGMDLYKTSKAA---QDVWNRADNHF---KDTYGFSILDIVINNPVNLTIHF----- 1676
Query: 340 VTGG-----------TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW---------TENSV 379
GG + E L+ + F E+ E T+ T+
Sbjct: 1677 --GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS-TSYTFRSEKGLLSATQF-- 1731
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMI 439
T P A+TL A F D
Sbjct: 1732 --TQP-----------------------ALTLMEKAAFED-------------------- 1746
Query: 440 AICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMA------FS-LAACADV 492
L+ +G + P + A ++ LA+ ADV
Sbjct: 1747 -----LK------SKG-----LIPADA--------------TFAGHSLGEYAALASLADV 1776
Query: 493 PVTIKDPSCTRKTFPDYF-DVLDSVTKR 519
+++ V R
Sbjct: 1777 -------------MS--IESLVEVVFYR 1789
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 56.5 bits (137), Expect = 1e-08
Identities = 47/372 (12%), Positives = 104/372 (27%), Gaps = 119/372 (31%)
Query: 86 REISGTVTLPGSKSLSNRIL-LLAA--LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE 142
+SG V G K + ++ +AA + ++N + + + + G +
Sbjct: 22 NRLSGAVRTSGFK---HSLVTTVAAAATASAPVRIENCPDIVETAVLGEIFRAAGAHAHY 78
Query: 143 DFAMKRAIVEGCGGL-----FPLAKQQTGEIELFLGNAGTAMRPL-----TAAVTAAGG- 191
D A + V+ L + G + L L A ++A+GG
Sbjct: 79 DGADETFTVDASAWDRAELPADLVGRIHGSL-YLLP-------ALVSRNGVARLSASGGC 130
Query: 192 NLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRING-----KGGLPGGK 245
+ G R RP + + + + G + +G L
Sbjct: 131 PI-----G-EGPRGRPD-EHLLDVMGRFGVTTR---------LTADGSVDLTAQRLTPCT 174
Query: 246 VKLSGKLSSQYLTA----------LLMAAPLALG-----NV--EIEIIDKLISVPYVEMT 288
+ + ++ L + L+ + G + + ++ D +++V
Sbjct: 175 IDMLDYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTLQHPYLKPDVTD-MVTV------ 227
Query: 289 LKLM--------------ERFGV-----FVEHSDSWDRFFIQGGQKYKSPGNAFVEGDAS 329
L+ + G V+ + D I+
Sbjct: 228 LRDLGADIEFAGPETWVIHGRGPESLHRPVDVTLIPDL--IEVV---------------- 269
Query: 330 SASYFVAGAAVTGGTVTVEGCGTSSLQGD--VKFAEVLEKMGAKVTWTENSVTVTGPPRD 387
++ A + ++L++MG +V + VT +
Sbjct: 270 --TWICA-GVLLADEPLRITGPGIDRAVHALAPEFDLLDRMGVRVDVGADEVTAHPLTKP 326
Query: 388 PYGRKHLRAVDV 399
LR V+
Sbjct: 327 ------LRPVEF 332
Score = 36.0 bits (84), Expect = 0.029
Identities = 44/263 (16%), Positives = 76/263 (28%), Gaps = 75/263 (28%)
Query: 238 KGGLP-GGKVKLSG-KLSSQYLTALLMAAPLALGNVEIEIIDKLISVPY---VEMTLKLM 292
GG G V+ SG K S + AA A V IE + P + ++
Sbjct: 19 HGGNRLSGAVRTSGFKHSL---VTTVAAAATASAPVRIE------NCPDIVETAVLGEIF 69
Query: 293 ERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASS-------ASYFVAGAAVT-GGT 344
G + + + F + A+ + + S ++ A V+ G
Sbjct: 70 RAAGAHAHYDGADETFTVDAS--------AWDRAELPADLVGRIHGSLYLLPALVSRNGV 121
Query: 345 VTVE---GC--GTSS--------LQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGR 391
+ GC G L + + G T + R
Sbjct: 122 ARLSASGGCPIGEGPRGRPDEHLLDV-------MGRFGVTTRLTADGSVDLTAQR----- 169
Query: 392 KHLRAVDVNMNKMPDVAMTLAVV------------ALFADGPTAIRDVASWRVKETERMI 439
L ++M ++ G T ++ + + +
Sbjct: 170 --LTPCTIDMLDYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTLQHPY----LKPD-VT 222
Query: 440 AICTELRKLGATVE-EGPDYCVI 461
+ T LR LGA +E GP+ VI
Sbjct: 223 DMVTVLRDLGADIEFAGPETWVI 245
Score = 32.2 bits (74), Expect = 0.43
Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 306 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVK-FAEV 364
I GG + G G S VA AA V +E C + + E+
Sbjct: 14 PLLEIHGGNRLS--GAVRTSGFKHSLVTTVAAAATASAPVRIENC--PDIV-ETAVLGEI 68
Query: 365 LEKMGAKVTWTENSVTVT 382
GA + T T
Sbjct: 69 FRAAGAHAHYDGADETFT 86
Score = 31.4 bits (72), Expect = 0.81
Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 20/113 (17%)
Query: 362 AEVLEKMGAKV------TWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD--VAMTLAV 413
VL +GA + TW + GP + +PD +T
Sbjct: 225 VTVLRDLGADIEFAGPETWV---IHGRGPESLHRPVDV--TL------IPDLIEVVTWIC 273
Query: 414 VALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEK 466
+ + L ++G V+ G D P K
Sbjct: 274 AGVLLADEPLRITGPGIDRA-VHALAPEFDLLDRMGVRVDVGADEVTAHPLTK 325
Score = 30.3 bits (69), Expect = 1.6
Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 26/122 (21%)
Query: 365 LEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD----VAMTLAVVALFADG 420
LE +G + + + V GP H D+ + D + LA AL G
Sbjct: 375 LEALGIRTAVDDTVLRVDGPCPP-----HRPGTDL---RATDLRAAAVLLLA--ALAVPG 424
Query: 421 PTAIRDVASWRVKETER-MIAICTELRKLGATVE--EGPDYCVITPPEKLKVAAIDTYDD 477
T +R R + +L KLGA + PD P+ A +D
Sbjct: 425 RTTLR-----NHHHLARGYRDLVEDLVKLGADIRHTTAPD----VRPKPPAGAGVDPAHH 475
Query: 478 HR 479
H
Sbjct: 476 HH 477
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
inside-OUT alpha/beta barrel; 1.55A {Enterobacter
cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A
1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A*
1uae_A* 3kqj_A* 3kr6_A* ...
Length = 419
Score = 55.5 bits (135), Expect = 2e-08
Identities = 78/350 (22%), Positives = 124/350 (35%), Gaps = 101/350 (28%)
Query: 86 REISGTVTLPGSKSLSNRIL-LLAA--LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE 142
+ G VT+ G+K N L +L A L+E + N+ +DI + L L +
Sbjct: 10 TRLQGEVTISGAK---NAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLT--QLGTKV 64
Query: 143 DFAMKRAI----VEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILD 198
+ I V + L K I LG PL A
Sbjct: 65 ERXGSVWIDASNVNNFSAPYDLVKTMRASI-WALG-------PLVA-------------- 102
Query: 199 GVPRMRE-------------RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244
R + RP+ DL + GL++LGA++ G V+ + G L G
Sbjct: 103 ---RFGQGQVSLPGGCAIGARPV-DLHIFGLEKLGAEIKLEEGY----VKASVNGRLKGA 154
Query: 245 KVKLSGKLSSQYLTA---LLMAAPLALG-----NV--EIEIIDKLISVPYVEMTLKLMER 294
+ + K+S + A ++ AA LA G N E EI+D + L +
Sbjct: 155 HIVMD-KVS---VGATVTIMSAATLAEGTTIIENAAREPEIVD-TANF------LVAL-- 201
Query: 295 FGVFVEHSDSWDRFFIQG-----GQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEG 349
G + + DR I+G G Y+ V D F+ AA++GG +
Sbjct: 202 -GAKISGQGT-DRITIEGVERLGGGVYR------VLPDRIETGTFLVAAAISGGKIVCRN 253
Query: 350 CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 399
+L L + GA + E+ +++ K +AV V
Sbjct: 254 AQPDTLD---AVLAKLREAGADIETGEDWISLDMHG------KRPKAVTV 294
Score = 35.9 bits (84), Expect = 0.031
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 19/117 (16%)
Query: 362 AEVLEKMGAKVTWT-ENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD--VAMTLAVVALFA 418
A L +GAK++ + +T+ G + L + +PD T V A +
Sbjct: 195 ANFLVALGAKISGQGTDRITIE-------GVERLGGGVYRV--LPDRIETGTFLVAAAIS 245
Query: 419 DGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYC-VITPPEKLKVAAIDT 474
G R+ + + + A+ +LR+ GA +E G D+ + ++ K + T
Sbjct: 246 GGKIVCRNA------QPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRT 296
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan,
structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
aeolicus} PDB: 3swg_A*
Length = 425
Score = 55.2 bits (134), Expect = 3e-08
Identities = 62/359 (17%), Positives = 110/359 (30%), Gaps = 122/359 (33%)
Query: 86 REISGTVTLPGSKSLSNRIL-LLAA--LSEGTTVVDNLLSSEDIHHMLDALKKLGLNV-- 140
+ ++G V + G+K N L ++ A L+E + N+ D+ + L L++LG +
Sbjct: 19 KPLTGKVKISGAK---NAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEF 75
Query: 141 EEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGV 200
+ + + ++ + L LG PL
Sbjct: 76 LNNTVFINPSINSFITNQEIIRRMRASV-LSLG-------PLLG---------------- 111
Query: 201 PRMRE-------------RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKG-GLPGGK 245
R RPI D + K+ GADV+ G +
Sbjct: 112 -RFGRAVVGLPGGCSIGARPI-DQHLKFFKEAGADVEVREG------YVYVNLKEKRRVH 163
Query: 246 VKLSGKLSSQYLTA---LLMAAPLALG-----NV--EIEIIDK---LISVPYVEM----- 287
K ++ +T L+ N+ E E++D L M
Sbjct: 164 FKFD-LVT---VTGTENALLYLASVPEESILENIALEPEVMDLIEVLKK-----MGAHVK 214
Query: 288 ---TLKLMERFGV----FVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAV 340
++ G HS DR I+ G ++ V A +
Sbjct: 215 VEGRSAYVK--GSENLKGFTHSVIPDR--IEAG------------------TFMVG-AVL 251
Query: 341 TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 399
T G + +E + L+ E L+ +G +V ++ V LRA D+
Sbjct: 252 TDGEILLENARINHLR---AVVEKLKLIGGEVVEENGNLRVFRKES-------LRACDI 300
Score = 42.8 bits (102), Expect = 2e-04
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 362 AEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD--VAMTLAVVALFAD 419
EVL+KMGA V S V G ++L+ ++ +PD A T V A+ D
Sbjct: 203 IEVLKKMGAHVKVEGRSAYVKG-------SENLKGFTHSV--IPDRIEAGTFMVGAVLTD 253
Query: 420 GPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDT 474
G + + + A+ +L+ +G V E + E L+ I+T
Sbjct: 254 GEILLENA------RINHLRAVVEKLKLIGGEVVEENGNLRVFRKESLRACDIET 302
Score = 30.5 bits (70), Expect = 1.4
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 306 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVK-FAEV 364
D F I+GG+ G + G ++A + +T T+ L DV+ +
Sbjct: 11 DYFVIRGGKPLT--GKVKISGAKNAALPIMFATILTEEPCTITNV--PDLL-DVRNTLLL 65
Query: 365 LEKMGAKVTWTENSVTVTGPPRD---PYGR-KHLRA 396
L ++GA++ + N+V + + +RA
Sbjct: 66 LRELGAELEFLNNTVFINPSINSFITNQEIIRRMRA 101
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and
degradation of murein sacculus and peptidog infectious
diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Length = 454
Score = 50.6 bits (122), Expect = 8e-07
Identities = 87/353 (24%), Positives = 137/353 (38%), Gaps = 107/353 (30%)
Query: 86 REISGTVTLPGSKSLSNRIL-LLAA---LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
++++G+V + G+K N +L ++AA S+GT+V+ N+ + D+ + + LK LN +
Sbjct: 34 KQLNGSVKMEGAK---NAVLPVIAATLLASKGTSVLKNVPNLSDVFTINEVLK--YLNAD 88
Query: 142 EDFAMKRAIVEGCGGL-----FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYI 196
F V+ G + F ++ I + +G PL A
Sbjct: 89 VSFVNDEVTVDATGEITSDAPFEYVRKMRASI-VVMG-------PLLA------------ 128
Query: 197 LDGVPRMRE-------------RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGK-GGL 241
R RP+ DL + G + +GA V G I L
Sbjct: 129 -----RTGSARVALPGGCAIGSRPV-DLHLKGFEAMGAVVKIENG------YIEATAEKL 176
Query: 242 PGGKVKLSGKLSSQYL-----TA---LLMAAPLALG-----NV--EIEIIDKLISVPYVE 286
G KV YL A ++MAA LA G NV E EI+D +
Sbjct: 177 VGAKV---------YLDFPSVGATQNIMMAATLAEGTTVIENVAREPEIVD-------LA 220
Query: 287 MTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVT 346
L M G V + + + I+G ++ + D A F+ AA+TGG V
Sbjct: 221 NFLNQM---GARVIGAGT-EVIRIEGVKELT-ATEHSIIPDRIEAGTFMIAAAITGGNVL 275
Query: 347 VEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 399
+E + LE+MG ++ EN + V GP + L+AVDV
Sbjct: 276 IEDAVPEHISS---LIAKLEEMGVQIIEEENGIRVIGPDK-------LKAVDV 318
Score = 36.3 bits (85), Expect = 0.021
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 24/119 (20%)
Query: 362 AEVLEKMGAKV----TWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD--VAMTLAVVA 415
A L +MGA+V T + + G L A + ++ +PD A T + A
Sbjct: 220 ANFLNQMGARVIGAGT---EVIRIEGVKE-------LTATEHSI--IPDRIEAGTFMIAA 267
Query: 416 LFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDT 474
G I D E + ++ +L ++G + E + + P+KLK + T
Sbjct: 268 AITGGNVLIEDAVP------EHISSLIAKLEEMGVQIIEEENGIRVIGPDKLKAVDVKT 320
Score = 28.2 bits (64), Expect = 8.0
Identities = 59/259 (22%), Positives = 93/259 (35%), Gaps = 70/259 (27%)
Query: 238 KGGLP-GGKVKLSG-KLSSQYLTAL-LMAAPLALGNVEIEIIDKLISVPY---VEMTLKL 291
+GG G VK+ G K + L ++AA L L + ++ +VP V ++
Sbjct: 31 RGGKQLNGSVKMEGAKNA-----VLPVIAATL-LASKGTSVLK---NVPNLSDVFTINEV 81
Query: 292 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASS-------ASYFVAGAAVT-GG 343
++ V + D + + S DA AS V G + G
Sbjct: 82 LKYLNADVSFVN--DEVTVDATGEITS--------DAPFEYVRKMRASIVVMGPLLARTG 131
Query: 344 TVTVE---GCGTSS------LQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHL 394
+ V GC S L+G E MGA V + T L
Sbjct: 132 SARVALPGGCAIGSRPVDLHLKG-------FEAMGAVVKIENGYIEATAE--------KL 176
Query: 395 RAVDVNMNKMPDVAMT----LAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGA 450
V ++ P V T +A A A+G T I +VA +E E ++ + L ++GA
Sbjct: 177 VGAKVYLD-FPSVGATQNIMMA--ATLAEGTTVIENVA----REPE-IVDLANFLNQMGA 228
Query: 451 TVE-EGPDYCVITPPEKLK 468
V G + I ++L
Sbjct: 229 RVIGAGTEVIRIEGVKELT 247
Score = 27.9 bits (63), Expect = 8.3
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 32/99 (32%)
Query: 365 LEKMGAKVTWTENSVTVTGPPR---------DPYGRKHLRAVDVNMNKMPDVAMTLAVVA 415
+ +M A + +SV ++GP + D LRA A+ LA
Sbjct: 362 MRRMNADMKIEGHSVIISGPAKLQGAEVAATD------LRA---------AAALILA--G 404
Query: 416 LFADGPTAIRDVASWRVKETER-MIAICTELRKLGATVE 453
L ADG T + +K +R +L+ LGA VE
Sbjct: 405 LVADGYTQVT-----ELKYLDRGYNNFHGKLQALGADVE 438
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8
c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 35.2 bits (80), Expect = 0.057
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 21/126 (16%)
Query: 26 PKSVS------AISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASE 79
P ++ SFRS+ R SW + T + VG + K+SK E
Sbjct: 178 PANIPDEELKRVASFRSRGRIPVLSW------IHPESQATITRCSQPMVGVSGKRSKEDE 231
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLA--ALSEGTTVVDNL-------LSSEDIHHML 130
LQ I + + + +A A G D L +IH M
Sbjct: 232 KYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMR 291
Query: 131 DALKKL 136
++L+KL
Sbjct: 292 ESLRKL 297
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 33.4 bits (75), Expect = 0.18
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 21/126 (16%)
Query: 26 PKSVS------AISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASE 79
P ++ SFRS+ R SW + T + VG + K+SK E
Sbjct: 250 PANIPDEELKRVASFRSRGRIPVLSW------IHPESQATITRCSQPMVGVSGKRSKEDE 303
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLA--ALSEGTTVVDNL-------LSSEDIHHML 130
LQ I + + + +A A G D L +IH M
Sbjct: 304 KYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMR 363
Query: 131 DALKKL 136
++L+KL
Sbjct: 364 ESLRKL 369
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.67
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 12 QNTRVFTNQTKLQKPKSVSAISFRSQ 37
Q + KL S A++ ++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKAT 45
Score = 29.9 bits (66), Expect = 1.2
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 391 RKHLRAVDVNMNKM--PDVAMTLAVVA 415
++ L+ + ++ K+ D A LA+ A
Sbjct: 19 KQALKKLQASL-KLYADDSAPALAIKA 44
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM,
iron, trans ION transport, proteobacteria, iron
transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica}
SCOP: e.62.1.1 PDB: 2j0r_A*
Length = 345
Score = 30.7 bits (69), Expect = 1.1
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 122 SSEDIHHMLDALKKLGLN-------VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGN 174
+ D+H LK+ L V D A + L +A+Q+ EI +F+GN
Sbjct: 191 AMTDVHEFFQLLKRNNLTRQQAFRAVGNDLA-YQVDNSSLTQLLNIAQQEQNEIMIFVGN 249
Query: 175 AG 176
G
Sbjct: 250 RG 251
>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase,
structural repeat; HET: HEM; 1.45A {Escherichia coli}
SCOP: e.62.1.1 PDB: 1u9t_A
Length = 354
Score = 30.3 bits (68), Expect = 1.3
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 122 SSEDIHHMLDALKKLGLN-------VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGN 174
+ D+H LK+ L V +D A + + A+Q EI +F+GN
Sbjct: 200 AMTDVHQFFTLLKRHNLTRQQAFNLVADDLA-CKVSNSALAQILESAQQDGNEIMVFVGN 258
Query: 175 AG 176
G
Sbjct: 259 RG 260
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET:
DNA; 2.00A {Bacillus subtilis}
Length = 135
Score = 29.1 bits (65), Expect = 1.5
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 102 NRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE 142
+ + +GT+ + NLL L K+LGLN E
Sbjct: 2 KKQQFIDMQEQGTSTIPNLL--------LTHYKQLGLNETE 34
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 29.7 bits (67), Expect = 2.3
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 19/102 (18%)
Query: 259 ALLMAAPLALGNVEIEI---IDKLISVPYVEMTLKLMERFGVF---VEHSDSWDRFF--- 309
+ AP I ID+ PY + E G + HS +F
Sbjct: 195 PAIQIAPTFFERKRCLIPAAIDQD---PYWRLQRDFAESLGYYKTAALHS----KFVPSL 247
Query: 310 --IQGGQKYKSPGNA-FVEGDASSASYFVAGAAVTGGTVTVE 348
+ G P A ++ V +TGG T++
Sbjct: 248 TSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLK 289
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal;
HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1
d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A*
2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A*
1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Length = 727
Score = 29.8 bits (66), Expect = 2.3
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 364 VLEKMGAKVTWTENSVTVTG 383
L++ GA V W + + T
Sbjct: 13 TLKEFGADVQWDDYAQLFTL 32
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 29.8 bits (67), Expect = 2.3
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 341 TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVN 400
G V G S A L K G+ + ++ + P DP R
Sbjct: 165 NKGQYVVIGGNESGFD----AAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRL 220
Query: 401 MNKMP 405
N +
Sbjct: 221 GNVIK 225
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 29.1 bits (66), Expect = 3.2
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 24/84 (28%)
Query: 410 TLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKV 469
L+ V FADG A+ V + T C EL ++ ++
Sbjct: 260 KLSNVDTFADG-VAVALVG----EYTFA---KCQEL------IDG-----MVLVANDGIS 300
Query: 470 AAI-DTYDDHRM----AMAFSLAA 488
AAI D YD+ R + A ++A
Sbjct: 301 AAIKDVYDEGRNILETSGAVAIAG 324
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 29.1 bits (66), Expect = 3.6
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 24/84 (28%)
Query: 410 TLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKV 469
L V LFA+G A++ + ET R +C E +++ +IT
Sbjct: 231 DLPRVGLFAEG-VAVKRIG----DETFR---LCQEY------LDD-----IITVDSDAIC 271
Query: 470 AAI-DTYDDHRM----AMAFSLAA 488
AA+ D ++D R + A +LA
Sbjct: 272 AAMKDLFEDVRAVAEPSGALALAG 295
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 29.4 bits (66), Expect = 3.7
Identities = 13/66 (19%), Positives = 22/66 (33%)
Query: 327 DASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPR 386
+ + A G T+T++G G S +G V F +W + + V P
Sbjct: 497 ATPTIGHVGPMMAKPGVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIPAV 556
Query: 387 DPYGRK 392
Sbjct: 557 AGGNYN 562
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 29.2 bits (65), Expect = 4.1
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 103 RILLLAALSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 160
R + ++ + T + L ++ + L+A E++ + +E G P
Sbjct: 273 RDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PA 331
Query: 161 A 161
Sbjct: 332 T 332
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase,
TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9
b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Length = 687
Score = 28.8 bits (64), Expect = 4.6
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 339 AVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVD 398
A+ G T TVEG G + Q V+ + +E G +V + V P G L V+
Sbjct: 616 ALEGCTFTVEGAGLTEEQKTVEIPDPVE-AGEEVKVRMDLV----PLHM--GLHKL-VVN 667
Query: 399 VNMNKMPDVAMTLAVV 414
+K+ V V+
Sbjct: 668 FESDKLKAVKGFRNVI 683
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain,
hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis}
SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Length = 1020
Score = 28.3 bits (62), Expect = 7.3
Identities = 16/111 (14%), Positives = 27/111 (24%), Gaps = 16/111 (14%)
Query: 295 FGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSS 354
G + +WD + G + G D + S A + +
Sbjct: 860 PGTNINLEHAWDSVIVTDG---RFDGAGVYAPDGTRTSAVSLLAVPEARQIVTRVPKAAL 916
Query: 355 LQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP 405
D A + SV + G G ++R V
Sbjct: 917 GGLDPATARM-------------SVAMFGNAESGEGIGNVRPVYDGAYWEA 954
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,020,657
Number of extensions: 515592
Number of successful extensions: 1711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1596
Number of HSP's successfully gapped: 63
Length of query: 519
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 421
Effective length of database: 3,965,535
Effective search space: 1669490235
Effective search space used: 1669490235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)