RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010070
(519 letters)
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 427
Score = 288 bits (738), Expect = 3e-93
Identities = 215/439 (48%), Positives = 282/439 (64%), Gaps = 17/439 (3%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ LQPI + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++
Sbjct: 4 LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
R + G GG + L G+ +L G
Sbjct: 64 YTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALC------LGSNDIVLTG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
PRM+ERPIG LV L+ GA + + N PP+R+ +GG GG V + G +SSQ+LTA
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRL--QGGFTGGNVDVDGSVSSQFLTA 175
Query: 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
LLM APLA + I I L+S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SP
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQH-YQQFVVKGGQSYQSP 234
Query: 320 GNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
G VEGDASSASYF+A AA+ GGTV V G G +S+QGD++FA+VLEKMGA + W ++
Sbjct: 235 GTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDD-- 292
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMI 439
R L A+D++MN +PD AMT+A ALFA G T +R++ +WRVKET+R+
Sbjct: 293 ------YISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLF 346
Query: 440 AICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDP 499
A+ TELRK+GA VEEG DY ITPPEKL A I TY+DHRMAM FSL A +D PVTI DP
Sbjct: 347 AMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDP 406
Query: 500 SCTRKTFPDYFDVLDSVTK 518
CT KTFPDYF+ L +++
Sbjct: 407 KCTAKTFPDYFEQLARISQ 425
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 427
Score = 270 bits (691), Expect = 3e-86
Identities = 104/436 (23%), Positives = 193/436 (44%), Gaps = 20/436 (4%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 143
IR + G + +PG KS+S+R ++ +L+EG T V ++L ED+ + + LG+ +E+
Sbjct: 6 NIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDK 65
Query: 144 FAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
V+G G A Q + GN+GT++R ++ + A + D +
Sbjct: 66 --DGVITVQGVGMAGLKAPQNALNM----GNSGTSIRLISGVLAGADFEVEMFGD--DSL 117
Query: 204 RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMA 263
+RP+ + LK++G + + PP+R+ G L +L S+Q +AL+ A
Sbjct: 118 SKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELP-IASAQVKSALMFA 176
Query: 264 APLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 323
A A G I + T ++++FG S + +QG QK
Sbjct: 177 ALQAKGESVIIEKE-----YTRNHTEDMLQQFGG--HLSVDGKKITVQGPQKLT-GQKVV 228
Query: 324 VEGDASSASYFVAGAAVTGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVT 382
V GD SSA++++ + + + ++ G + + + ++T +
Sbjct: 229 VPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSA 288
Query: 383 GPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAIC 442
+ K + ++ D +A++A A G T I+D +VKET+R+ +
Sbjct: 289 TLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVA 348
Query: 443 TELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAA--CADVPVTIKDPS 500
L +GA + D +I L A ++T+ DHR+ M ++AA AD V +
Sbjct: 349 DALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAE 408
Query: 501 CTRKTFPDYFDVLDSV 516
++P +FD L+S+
Sbjct: 409 AINTSYPSFFDDLESL 424
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
transferase (EPT, MurA, MurZ) {Enterobacter cloacae
[TaxId: 550]}
Length = 419
Score = 212 bits (539), Expect = 6e-64
Identities = 87/438 (19%), Positives = 153/438 (34%), Gaps = 33/438 (7%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+Q + G VT+ G+K+ + IL A L+E + N+ +DI + L +LG
Sbjct: 4 FRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTK 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
VE D ++ A +L + + A G L G
Sbjct: 64 VERD---GSVWIDASNVNNFSAPY-----DLVKTMRASIWALGP--LVARFGQGQVSLPG 113
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
+ RP+ + GL++LGA++ G V G L G + K+S
Sbjct: 114 GCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASV----NGRLKGAHIV-MDKVSVGATVT 168
Query: 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
++ AA LA G II+ P + T + G + + R I+G ++
Sbjct: 169 IMSAATLAEGT---TIIENAAREPEIVDTANFLVALGAKISGQGTD-RITIEGVERLGGG 224
Query: 320 GNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
+ + ++ VA AA++GG + +L L + GA + E+ +
Sbjct: 225 VYRVLPDRIETGTFLVA-AAISGGKIVCRNAQPDTLD---AVLAKLREAGADIETGEDWI 280
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMI 439
++ + P V + P A + A F E
Sbjct: 281 SLDMHGKRPKA--------VTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRF 332
Query: 440 AICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAA-CADVPVTIKD 498
EL ++GA E + + EKL A + D R + + LA A+ +
Sbjct: 333 MHVPELIRMGAHAEIESNTVICHGVEKLSGAQV-MATDLRASASLVLAGCIAEGTTVVDR 391
Query: 499 PSCTRKTFPDYFDVLDSV 516
+ + D L ++
Sbjct: 392 IYHIDRGYERIEDKLRAL 409
Score = 28.7 bits (63), Expect = 1.9
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 292 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCG 351
+ R G E + G +K G + D +++ V + GT V+
Sbjct: 338 LIRMGAHAEIES--NTVICHGVEKLS--GAQVMATDLRASASLVLAGCIAEGTTVVDRIY 393
Query: 352 TSSLQGDVKFAEVLEKMGAKVTWTE 376
+G + + L +GA + +
Sbjct: 394 HID-RGYERIEDKLRALGANIERVK 417
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 216
Score = 135 bits (339), Expect = 2e-37
Identities = 95/225 (42%), Positives = 128/225 (56%), Gaps = 9/225 (4%)
Query: 101 SNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 160
SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++ R + G GG
Sbjct: 1 SNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLH- 59
Query: 161 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGA 220
E L L A G+ +L G PRM+ERPIG LV L+ GA
Sbjct: 60 -----AEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGA 114
Query: 221 DVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLI 280
+ + N PP+R+ +GG GG V + G +SSQ+LTALLM APLA + I I L+
Sbjct: 115 KITYLEQENYPPLRL--QGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLV 172
Query: 281 SVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVE 325
S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SPG VE
Sbjct: 173 SKPYIDITLNLMKTFGVEIENQH-YQQFVVKGGQSYQSPGTYLVE 216
Score = 31.6 bits (70), Expect = 0.16
Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 10/194 (5%)
Query: 196 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQ 255
+L + + + ++ L LG + I G L ++
Sbjct: 16 VLTNLLDSDD--VRHMLNALTALGVSYT-LSADRTRCEIIGNGGPLHAEGALELFLGNAG 72
Query: 256 YLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315
L AA N + + + + + + G + + + + ++
Sbjct: 73 TAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGG 132
Query: 316 YKSPGNAFVEGDASS----ASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAK 371
+ GN V+G SS A A A + ++G S D+ +++ G +
Sbjct: 133 FT-GGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDI-TLNLMKTFGVE 190
Query: 372 VTWTE-NSVTVTGP 384
+ V G
Sbjct: 191 IENQHYQQFVVKGG 204
>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 167
Score = 31.3 bits (70), Expect = 0.16
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 434 ETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDD 477
E E + + GA P I E + +A + Y D
Sbjct: 111 EVEDAESAFSISVANGAIPSSPP----IVLNEAVTIAEVKLYGD 150
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
O157:H7 [TaxId: 83334]}
Length = 337
Score = 29.4 bits (66), Expect = 0.94
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 122 SSEDIHHMLDALKKLGLN-------VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGN 174
+ D+H LK+ L V +D A + + A+Q EI +F+GN
Sbjct: 188 AMTDVHQFFTLLKRHNLTRQQAFNLVADDLA-CKVSNSALAQILESAQQDGNEIMVFVGN 246
Query: 175 AGTAMRPLTAAVTAA 189
G ++ T V
Sbjct: 247 RG-CVQIFTGVVEKV 260
>d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase,
domain D {Bacillus circulans, different strains [TaxId:
1397]}
Length = 87
Score = 27.3 bits (60), Expect = 1.3
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 342 GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPP 385
G T+T++G G S +G V F +W + + V P
Sbjct: 16 GVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIPA 59
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710
{Thermotoga maritima [TaxId: 2336]}
Length = 139
Score = 26.9 bits (59), Expect = 3.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 121 LSSEDIHHMLDALKKLGLNVEEDF 144
L E +LD LK+L +E +F
Sbjct: 116 LGKEKSSKILDYLKELKGVMERNF 139
>d1cbka_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin
pyrophosphokinase, HPPK {Haemophilus influenzae [TaxId:
727]}
Length = 160
Score = 27.0 bits (59), Expect = 3.6
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 81 VLQPIREISGTVTLPGSKSLSNRILLLAALSE 112
V+ P+ EI+ + LP S+ ++ L+ ++
Sbjct: 124 VIVPLFEIASDLVLPNSQIITE---LVKQFAD 152
>d2v3ia1 b.29.1.10 (A:1-434) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Trichoderma reesei, Cel7A
[TaxId: 51453]}
Length = 434
Score = 27.9 bits (62), Expect = 3.6
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 302 SDSWDRFFIQGGQKYKSPGNAF--VEGDASSASYFVAGAAVTGGTVTVEGCGTSSL 355
S + +R+++Q G ++ P G+ + Y A A GG+ + G +
Sbjct: 297 SGAINRYYVQNGVTFQQPNAELGSYSGNELNDDYCTAEEAEFGGSSFSDKGGLTQF 352
>d1d6za4 d.82.1.1 (A:7-90) Copper amine oxidase, domain N
{Escherichia coli [TaxId: 562]}
Length = 84
Score = 25.6 bits (56), Expect = 4.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 359 VKFAEVLEKMGAKVTWTENSVTVT 382
V + L++ GA V W + + T
Sbjct: 2 VPMDKTLKEFGADVQWDDYAQLFT 25
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 27.3 bits (60), Expect = 5.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 113 GTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLA 161
G +NLL+ + D+LK +N+ + + G GGL LA
Sbjct: 71 GRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLA 119
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus
faecalis [TaxId: 1351]}
Length = 144
Score = 26.2 bits (57), Expect = 7.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 121 LSSEDIHHMLDALKKLGLNVEEDF 144
LS +I + D L ++ NV ED+
Sbjct: 115 LSEVEISQLADYLVRMRKNVSEDW 138
>d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase,
domain D {Thermoanaerobacterium [TaxId: 28895]}
Length = 83
Score = 24.9 bits (54), Expect = 8.7
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 341 TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPP 385
G T+T++G G + G V F G V+W + V V P
Sbjct: 16 AGQTITIDGRGFGTTSGQVLFGST---AGTIVSWDDTEVKVKVPS 57
>d1q9ha_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Talaromyces emersonii [TaxId:
68825]}
Length = 435
Score = 26.4 bits (58), Expect = 9.5
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 307 RFFIQGGQKYKSPGNAF--VEGDASSASYFVAGAAVTGGT 344
RF+IQ P + V G++ + + A G T
Sbjct: 305 RFYIQNSNVIPQPNSDISGVTGNSITTEFCTAQKQAFGDT 344
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,886,480
Number of extensions: 89012
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 17
Length of query: 519
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 430
Effective length of database: 1,185,626
Effective search space: 509819180
Effective search space used: 509819180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)