Query 010071
Match_columns 519
No_of_seqs 374 out of 2593
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 19:16:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_A HBS1, elongation factor 100.0 1.7E-30 5.8E-35 286.9 8.9 212 262-475 173-385 (592)
2 3j2k_7 ERF3, eukaryotic polype 100.0 6.2E-29 2.1E-33 265.3 19.5 209 263-475 14-225 (439)
3 3p26_A Elongation factor 1 alp 100.0 8.1E-29 2.8E-33 267.3 12.0 213 263-476 30-242 (483)
4 3izq_1 HBS1P, elongation facto 100.0 2.6E-28 8.8E-33 270.4 14.6 212 263-475 164-375 (611)
5 1f60_A Elongation factor EEF1A 99.9 4.1E-27 1.4E-31 252.5 15.4 207 263-473 4-210 (458)
6 1jny_A EF-1-alpha, elongation 99.9 5E-27 1.7E-31 250.2 15.8 207 264-474 4-212 (435)
7 1r5b_A Eukaryotic peptide chai 99.9 4.6E-27 1.6E-31 252.7 11.8 211 264-476 41-255 (467)
8 1zun_B Sulfate adenylate trans 99.9 3.6E-26 1.2E-30 243.4 16.6 202 264-476 22-225 (434)
9 1d2e_A Elongation factor TU (E 99.9 4.4E-23 1.5E-27 217.2 14.9 170 265-458 2-171 (397)
10 2c78_A Elongation factor TU-A; 99.9 1.1E-22 3.6E-27 214.6 12.8 175 263-461 8-183 (405)
11 1wb1_A Translation elongation 99.9 2.7E-22 9.1E-27 216.5 10.2 168 262-466 15-183 (482)
12 1kk1_A EIF2gamma; initiation o 99.9 1.1E-21 3.6E-26 207.3 12.5 164 263-466 7-194 (410)
13 4dkx_A RAS-related protein RAB 99.9 2.5E-21 8.6E-26 187.7 12.7 160 264-467 11-171 (216)
14 3avx_A Elongation factor TS, e 99.8 2E-21 6.8E-26 224.5 13.0 172 262-457 292-463 (1289)
15 1s0u_A EIF-2-gamma, translatio 99.8 2E-21 6.9E-26 205.1 11.5 166 263-467 5-193 (408)
16 2ew1_A RAS-related protein RAB 99.8 1.2E-20 4E-25 179.8 14.3 175 248-466 8-183 (201)
17 1c1y_A RAS-related protein RAP 99.8 1.3E-20 4.5E-25 170.3 13.4 161 264-466 1-161 (167)
18 1kao_A RAP2A; GTP-binding prot 99.8 8.6E-21 2.9E-25 170.9 12.0 160 264-466 1-160 (167)
19 1u8z_A RAS-related protein RAL 99.8 1.5E-20 5E-25 169.6 13.5 158 264-466 2-161 (168)
20 3sjy_A Translation initiation 99.8 8.2E-21 2.8E-25 200.1 13.4 178 263-467 5-187 (403)
21 2oil_A CATX-8, RAS-related pro 99.8 1.9E-20 6.5E-25 174.9 14.3 172 250-466 9-182 (193)
22 2hjg_A GTP-binding protein ENG 99.8 3.2E-21 1.1E-25 205.3 9.7 209 265-516 174-398 (436)
23 3tw8_B RAS-related protein RAB 99.8 2.4E-20 8.2E-25 170.8 14.2 159 264-466 7-165 (181)
24 1r2q_A RAS-related protein RAB 99.8 3.6E-20 1.2E-24 167.7 15.0 159 264-466 4-163 (170)
25 2hxs_A RAB-26, RAS-related pro 99.8 2.2E-20 7.6E-25 171.2 13.3 163 263-466 3-167 (178)
26 2elf_A Protein translation elo 99.8 1.1E-20 3.9E-25 197.3 12.6 146 268-466 23-174 (370)
27 2lkc_A Translation initiation 99.8 2E-21 6.9E-26 178.1 5.7 156 264-466 6-165 (178)
28 4dcu_A GTP-binding protein ENG 99.8 6.4E-21 2.2E-25 204.0 10.5 210 264-516 193-418 (456)
29 1ek0_A Protein (GTP-binding pr 99.8 5.9E-20 2E-24 166.2 15.3 161 265-466 2-163 (170)
30 2nzj_A GTP-binding protein REM 99.8 1.9E-20 6.6E-25 170.8 12.0 157 264-466 2-163 (175)
31 2y8e_A RAB-protein 6, GH09086P 99.8 5.3E-20 1.8E-24 168.2 14.9 160 263-466 11-171 (179)
32 3t5g_A GTP-binding protein RHE 99.8 2E-20 6.8E-25 172.5 11.9 160 264-466 4-163 (181)
33 2a5j_A RAS-related protein RAB 99.8 4.7E-20 1.6E-24 172.4 14.4 171 251-466 6-178 (191)
34 2g6b_A RAS-related protein RAB 99.8 2.3E-20 7.9E-25 171.4 11.9 160 264-466 8-168 (180)
35 2h57_A ADP-ribosylation factor 99.8 2.9E-20 1E-24 173.5 12.8 162 261-466 16-181 (190)
36 1z0j_A RAB-22, RAS-related pro 99.8 8.2E-20 2.8E-24 165.5 15.1 158 264-466 4-163 (170)
37 2a9k_A RAS-related protein RAL 99.8 4.5E-20 1.5E-24 169.9 13.5 161 263-466 15-175 (187)
38 2o52_A RAS-related protein RAB 99.8 1.8E-20 6.1E-25 177.2 10.9 174 249-466 8-182 (200)
39 3clv_A RAB5 protein, putative; 99.8 6.2E-20 2.1E-24 170.6 14.4 106 344-466 93-198 (208)
40 3kkq_A RAS-related protein M-R 99.8 5E-20 1.7E-24 170.1 13.6 162 262-466 14-176 (183)
41 1z2a_A RAS-related protein RAB 99.8 7.3E-20 2.5E-24 165.6 14.4 158 265-466 4-161 (168)
42 2fg5_A RAB-22B, RAS-related pr 99.8 7.8E-20 2.7E-24 171.3 15.0 158 264-466 21-180 (192)
43 2efe_B Small GTP-binding prote 99.8 7.2E-20 2.5E-24 168.2 14.5 159 263-466 9-169 (181)
44 3q72_A GTP-binding protein RAD 99.8 2.3E-20 8E-25 169.1 11.0 154 266-466 2-158 (166)
45 1upt_A ARL1, ADP-ribosylation 99.8 4.2E-20 1.4E-24 167.9 12.7 157 264-466 5-163 (171)
46 1z08_A RAS-related protein RAB 99.8 1E-19 3.6E-24 165.1 15.1 160 264-466 4-163 (170)
47 2bov_A RAla, RAS-related prote 99.8 6E-20 2.1E-24 172.5 13.7 158 263-466 11-171 (206)
48 4dsu_A GTPase KRAS, isoform 2B 99.8 4E-20 1.4E-24 170.8 12.3 158 265-466 3-160 (189)
49 3bc1_A RAS-related protein RAB 99.8 7.7E-20 2.6E-24 169.2 14.2 160 263-466 8-179 (195)
50 1z0f_A RAB14, member RAS oncog 99.8 8.6E-20 2.9E-24 166.8 14.2 159 264-466 13-172 (179)
51 2hup_A RAS-related protein RAB 99.8 6.5E-20 2.2E-24 173.7 13.8 172 252-466 15-187 (201)
52 2gf9_A RAS-related protein RAB 99.8 1.7E-19 5.8E-24 168.1 16.3 158 264-466 20-179 (189)
53 3vqt_A RF-3, peptide chain rel 99.8 1.1E-20 3.8E-25 206.8 9.4 141 263-421 28-168 (548)
54 2fn4_A P23, RAS-related protei 99.8 7.7E-20 2.6E-24 167.4 13.6 157 264-466 7-166 (181)
55 3t1o_A Gliding protein MGLA; G 99.8 1.7E-20 6E-25 174.2 9.2 171 263-466 11-186 (198)
56 2h17_A ADP-ribosylation factor 99.8 2.4E-20 8.2E-25 173.0 10.0 165 256-466 11-177 (181)
57 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.3E-19 4.5E-24 165.9 14.7 162 263-466 4-168 (177)
58 2erx_A GTP-binding protein DI- 99.8 1E-19 3.6E-24 164.9 13.8 160 265-466 2-161 (172)
59 2bcg_Y Protein YP2, GTP-bindin 99.8 8.3E-20 2.8E-24 172.6 13.5 159 264-467 6-166 (206)
60 4bas_A ADP-ribosylation factor 99.8 7.7E-20 2.6E-24 170.8 13.1 162 261-466 12-183 (199)
61 2bme_A RAB4A, RAS-related prot 99.8 1E-19 3.4E-24 168.2 13.6 158 264-466 8-167 (186)
62 1z06_A RAS-related protein RAB 99.8 5.3E-20 1.8E-24 171.6 11.6 163 262-466 16-182 (189)
63 1x3s_A RAS-related protein RAB 99.8 2.4E-20 8.3E-25 173.4 9.2 159 262-466 11-172 (195)
64 3tkl_A RAS-related protein RAB 99.8 1.5E-19 5.3E-24 168.4 14.6 159 263-466 13-173 (196)
65 3oes_A GTPase rhebl1; small GT 99.8 6.2E-20 2.1E-24 173.2 11.7 161 263-466 21-181 (201)
66 1zbd_A Rabphilin-3A; G protein 99.8 2.9E-19 1E-23 168.1 16.2 157 265-466 7-165 (203)
67 2ce2_X GTPase HRAS; signaling 99.8 1.7E-19 5.8E-24 162.0 13.6 159 264-466 1-159 (166)
68 4dhe_A Probable GTP-binding pr 99.8 6.3E-20 2.2E-24 175.2 11.4 162 264-466 27-205 (223)
69 2fu5_C RAS-related protein RAB 99.8 1.1E-19 3.8E-24 167.8 12.5 158 264-466 6-165 (183)
70 3reg_A RHO-like small GTPase; 99.8 1.5E-19 5.1E-24 169.2 13.4 163 262-466 19-182 (194)
71 1r8s_A ADP-ribosylation factor 99.8 5E-20 1.7E-24 166.6 9.8 154 267-466 1-156 (164)
72 1zd9_A ADP-ribosylation factor 99.8 7.2E-20 2.5E-24 171.0 11.0 158 263-466 19-179 (188)
73 3cb4_D GTP-binding protein LEP 99.8 7.2E-20 2.5E-24 202.0 12.6 169 265-466 3-176 (599)
74 3gj0_A GTP-binding nuclear pro 99.8 8.7E-20 3E-24 174.7 11.3 160 261-466 10-169 (221)
75 1mh1_A RAC1; GTP-binding, GTPa 99.8 3.8E-19 1.3E-23 163.8 15.1 162 264-466 3-174 (186)
76 1vg8_A RAS-related protein RAB 99.8 2.8E-19 9.6E-24 168.3 14.2 160 263-467 5-170 (207)
77 1zj6_A ADP-ribosylation factor 99.8 8.7E-20 3E-24 169.8 10.6 157 264-466 14-172 (187)
78 1m2o_B GTP-binding protein SAR 99.8 8.8E-20 3E-24 171.3 10.7 157 264-466 21-186 (190)
79 1fzq_A ADP-ribosylation factor 99.8 6.6E-20 2.2E-24 170.6 9.7 157 264-466 14-172 (181)
80 2ywe_A GTP-binding protein LEP 99.8 4.4E-20 1.5E-24 203.6 9.9 170 264-466 4-178 (600)
81 1ksh_A ARF-like protein 2; sma 99.8 6.4E-20 2.2E-24 170.1 9.5 157 264-466 16-174 (186)
82 1ky3_A GTP-binding protein YPT 99.8 3E-19 1E-23 163.6 13.9 165 263-466 5-172 (182)
83 3dz8_A RAS-related protein RAB 99.8 7.6E-20 2.6E-24 171.0 10.1 160 262-466 19-180 (191)
84 3con_A GTPase NRAS; structural 99.8 2.9E-19 9.9E-24 166.2 13.9 162 261-466 16-177 (190)
85 3q85_A GTP-binding protein REM 99.8 1.4E-19 4.9E-24 164.4 11.3 157 266-466 2-161 (169)
86 1zo1_I IF2, translation initia 99.8 5.7E-21 2E-25 206.5 2.3 157 264-467 2-162 (501)
87 1g16_A RAS-related protein SEC 99.8 2.6E-19 9E-24 162.2 12.6 156 266-466 3-159 (170)
88 4djt_A GTP-binding nuclear pro 99.8 9.7E-20 3.3E-24 173.6 10.1 176 263-483 8-186 (218)
89 2p5s_A RAS and EF-hand domain 99.8 3.1E-19 1.1E-23 168.1 13.3 162 263-466 25-191 (199)
90 1f6b_A SAR1; gtpases, N-termin 99.8 6.5E-20 2.2E-24 173.5 8.6 157 264-466 23-193 (198)
91 2wji_A Ferrous iron transport 99.8 1.4E-19 4.7E-24 165.8 10.5 151 264-466 1-159 (165)
92 2dyk_A GTP-binding protein; GT 99.8 1.6E-19 5.3E-24 162.5 10.7 148 267-466 2-156 (161)
93 3pqc_A Probable GTP-binding pr 99.8 2.7E-19 9.2E-24 166.0 12.6 155 264-466 21-188 (195)
94 2b6h_A ADP-ribosylation factor 99.8 9.7E-20 3.3E-24 171.3 9.6 157 264-466 27-185 (192)
95 1moz_A ARL1, ADP-ribosylation 99.8 8.2E-20 2.8E-24 168.4 8.8 157 264-466 16-174 (183)
96 2il1_A RAB12; G-protein, GDP, 99.8 3.2E-19 1.1E-23 167.3 13.0 160 263-466 23-184 (192)
97 3iev_A GTP-binding protein ERA 99.8 1.3E-19 4.5E-24 184.4 11.1 158 264-467 8-177 (308)
98 3j25_A Tetracycline resistance 99.8 2.1E-20 7.1E-25 208.1 5.1 135 265-421 1-135 (638)
99 2x77_A ADP-ribosylation factor 99.8 1.2E-19 4.1E-24 168.9 9.4 157 264-466 20-178 (189)
100 4gzl_A RAS-related C3 botulinu 99.8 8.4E-19 2.9E-23 166.4 15.3 163 263-466 27-199 (204)
101 1wf3_A GTP-binding protein; GT 99.8 2.3E-19 7.8E-24 182.3 11.8 155 264-468 5-169 (301)
102 3llu_A RAS-related GTP-binding 99.8 4.5E-19 1.5E-23 166.9 13.0 168 262-466 16-191 (196)
103 2atv_A RERG, RAS-like estrogen 99.8 7.2E-19 2.5E-23 165.0 14.1 159 264-466 26-185 (196)
104 1svi_A GTP-binding protein YSX 99.8 3.7E-19 1.3E-23 165.9 11.9 156 264-466 21-189 (195)
105 2fh5_B SR-beta, signal recogni 99.8 7.6E-19 2.6E-23 166.9 13.8 164 264-466 5-210 (214)
106 3cpj_B GTP-binding protein YPT 99.8 8.5E-19 2.9E-23 168.5 14.0 158 264-466 11-170 (223)
107 3i8s_A Ferrous iron transport 99.8 1.8E-19 6E-24 180.4 9.4 154 264-469 1-166 (274)
108 2f7s_A C25KG, RAS-related prot 99.8 5.9E-19 2E-23 168.0 12.5 159 263-466 22-193 (217)
109 3tr5_A RF-3, peptide chain rel 99.8 1.2E-19 4E-24 197.8 8.6 138 264-419 11-148 (528)
110 2gf0_A GTP-binding protein DI- 99.8 5.2E-19 1.8E-23 165.2 11.7 160 264-467 6-166 (199)
111 1mky_A Probable GTP-binding pr 99.8 4.3E-19 1.5E-23 189.0 12.6 209 265-516 179-400 (439)
112 3izy_P Translation initiation 99.8 9.9E-21 3.4E-25 206.2 -0.1 159 265-466 3-162 (537)
113 2j1l_A RHO-related GTP-binding 99.8 1.1E-18 3.9E-23 166.7 14.2 162 263-466 31-203 (214)
114 3cbq_A GTP-binding protein REM 99.8 5.1E-19 1.7E-23 167.1 11.6 160 263-466 20-182 (195)
115 3cph_A RAS-related protein SEC 99.8 8.4E-19 2.9E-23 165.7 13.1 158 264-466 18-176 (213)
116 3c5c_A RAS-like protein 12; GD 99.8 1.1E-18 3.6E-23 163.3 13.6 160 263-466 18-180 (187)
117 3ihw_A Centg3; RAS, centaurin, 99.8 3.4E-19 1.2E-23 166.6 10.0 156 262-466 16-174 (184)
118 1g7s_A Translation initiation 99.8 5E-19 1.7E-23 195.2 12.8 163 264-466 3-212 (594)
119 2atx_A Small GTP binding prote 99.8 1.5E-18 5.2E-23 162.1 14.3 163 264-466 16-187 (194)
120 2fv8_A H6, RHO-related GTP-bin 99.8 1.9E-18 6.5E-23 164.0 14.8 161 264-466 23-194 (207)
121 3iby_A Ferrous iron transport 99.8 2.9E-19 1E-23 177.4 9.5 151 267-469 2-164 (256)
122 2j0v_A RAC-like GTP-binding pr 99.8 1.6E-18 5.6E-23 164.3 14.1 163 264-466 7-174 (212)
123 3bwd_D RAC-like GTP-binding pr 99.8 5.8E-19 2E-23 162.3 10.4 163 264-466 6-175 (182)
124 2yc2_C IFT27, small RAB-relate 99.8 5.3E-19 1.8E-23 166.0 10.3 161 264-466 18-186 (208)
125 3q3j_B RHO-related GTP-binding 99.8 2.2E-18 7.5E-23 165.1 14.5 165 262-466 23-197 (214)
126 2gco_A H9, RHO-related GTP-bin 99.8 1.5E-18 5.2E-23 163.8 13.1 160 265-466 24-194 (201)
127 3a1s_A Iron(II) transport prot 99.8 9.6E-19 3.3E-23 173.8 11.7 152 264-467 3-162 (258)
128 2q3h_A RAS homolog gene family 99.8 4E-18 1.4E-22 160.1 15.2 164 263-466 17-189 (201)
129 2wjg_A FEOB, ferrous iron tran 99.8 9.2E-19 3.1E-23 162.3 10.5 152 263-466 4-163 (188)
130 3k53_A Ferrous iron transport 99.8 8.3E-19 2.9E-23 174.6 10.8 153 264-467 1-161 (271)
131 2qu8_A Putative nucleolar GTP- 99.8 3.4E-18 1.2E-22 165.0 14.4 163 264-466 27-199 (228)
132 1m7b_A RND3/RHOE small GTP-bin 99.8 4.1E-18 1.4E-22 158.2 14.2 163 263-466 4-177 (184)
133 3l0i_B RAS-related protein RAB 99.8 1E-19 3.4E-24 171.5 3.2 159 263-466 30-190 (199)
134 2iwr_A Centaurin gamma 1; ANK 99.8 2.3E-18 8E-23 158.1 12.3 157 264-466 5-163 (178)
135 3o47_A ADP-ribosylation factor 99.8 9.7E-19 3.3E-23 179.6 10.7 158 263-466 162-321 (329)
136 3lvq_E ARF-GAP with SH3 domain 99.8 8.6E-19 2.9E-23 188.9 10.2 157 263-466 319-478 (497)
137 2g3y_A GTP-binding protein GEM 99.8 2.5E-18 8.6E-23 165.8 11.9 160 264-466 35-197 (211)
138 1gwn_A RHO-related GTP-binding 99.7 4.2E-18 1.4E-22 162.4 12.2 163 263-466 25-198 (205)
139 2gj8_A MNME, tRNA modification 99.7 1.2E-18 4.2E-23 161.0 8.0 147 265-466 3-160 (172)
140 3r7w_A Gtpase1, GTP-binding pr 99.7 4.8E-18 1.6E-22 172.7 12.9 166 266-467 3-176 (307)
141 1mky_A Probable GTP-binding pr 99.7 4.3E-18 1.5E-22 181.3 12.7 149 267-466 2-160 (439)
142 2cjw_A GTP-binding protein GEM 99.7 6.7E-18 2.3E-22 159.0 12.2 159 264-466 4-166 (192)
143 3b1v_A Ferrous iron uptake tra 99.7 2.3E-18 7.8E-23 172.6 9.3 150 266-468 3-160 (272)
144 2h5e_A Peptide chain release f 99.7 3.4E-18 1.1E-22 186.4 11.4 178 264-465 11-188 (529)
145 2hjg_A GTP-binding protein ENG 99.7 8.7E-19 3E-23 186.5 6.2 150 266-467 3-160 (436)
146 4fn5_A EF-G 1, elongation fact 99.7 4E-18 1.4E-22 191.9 11.8 134 264-419 11-151 (709)
147 1ega_A Protein (GTP-binding pr 99.7 8.3E-18 2.8E-22 170.6 11.4 157 264-468 6-171 (301)
148 3th5_A RAS-related C3 botulinu 99.6 4.6E-19 1.6E-23 167.4 0.0 162 264-466 28-199 (204)
149 3qq5_A Small GTP-binding prote 99.7 6.3E-18 2.2E-22 179.4 8.1 151 264-466 32-190 (423)
150 4dcu_A GTP-binding protein ENG 99.7 5.1E-18 1.8E-22 181.5 6.1 154 262-467 19-180 (456)
151 3gee_A MNME, tRNA modification 99.7 2.6E-17 8.8E-22 177.3 11.3 154 265-467 232-393 (476)
152 2xtp_A GTPase IMAP family memb 99.7 1E-17 3.4E-22 165.1 7.0 163 263-466 19-202 (260)
153 2zej_A Dardarin, leucine-rich 99.7 2.4E-17 8.2E-22 153.5 8.9 166 266-466 2-172 (184)
154 2xex_A Elongation factor G; GT 99.7 3.4E-17 1.2E-21 183.9 11.6 180 264-474 8-187 (693)
155 2rdo_7 EF-G, elongation factor 99.7 8.1E-17 2.8E-21 181.0 14.0 135 264-420 8-149 (704)
156 1dar_A EF-G, elongation factor 99.7 4.8E-17 1.6E-21 182.6 12.0 180 263-473 9-188 (691)
157 2wkq_A NPH1-1, RAS-related C3 99.7 2.3E-16 7.7E-21 159.3 15.3 161 265-466 154-324 (332)
158 2cxx_A Probable GTP-binding pr 99.7 1.1E-17 3.7E-22 154.8 5.0 154 267-466 2-178 (190)
159 3lxw_A GTPase IMAP family memb 99.7 6.8E-17 2.3E-21 159.1 9.9 161 263-470 18-206 (247)
160 1n0u_A EF-2, elongation factor 99.7 6.2E-17 2.1E-21 185.3 10.7 172 264-459 17-220 (842)
161 3t5d_A Septin-7; GTP-binding p 99.7 1.5E-16 5.1E-21 158.7 11.7 162 265-466 7-198 (274)
162 1xzp_A Probable tRNA modificat 99.7 4.9E-17 1.7E-21 175.3 8.7 150 266-468 243-401 (482)
163 2dy1_A Elongation factor G; tr 99.7 1.9E-16 6.6E-21 177.0 13.1 133 264-418 7-139 (665)
164 2e87_A Hypothetical protein PH 99.6 5E-16 1.7E-20 160.9 12.1 158 264-467 165-331 (357)
165 3geh_A MNME, tRNA modification 99.6 7.8E-17 2.7E-21 172.9 5.8 149 265-467 223-379 (462)
166 3r7w_B Gtpase2, GTP-binding pr 99.6 2.5E-16 8.6E-21 161.5 9.0 163 268-468 1-170 (331)
167 3dpu_A RAB family protein; roc 99.6 2.3E-16 7.8E-21 171.9 8.8 156 263-466 38-202 (535)
168 2f9l_A RAB11B, member RAS onco 99.6 1.9E-15 6.3E-20 142.4 13.9 156 266-466 5-162 (199)
169 1nrj_B SR-beta, signal recogni 99.6 2E-16 7E-21 150.5 6.8 150 263-459 9-171 (218)
170 2aka_B Dynamin-1; fusion prote 99.6 6.5E-16 2.2E-20 154.4 10.4 109 343-466 124-247 (299)
171 1lnz_A SPO0B-associated GTP-bi 99.6 6.9E-17 2.4E-21 167.0 3.0 155 266-466 158-324 (342)
172 1oix_A RAS-related protein RAB 99.6 4.1E-15 1.4E-19 139.6 13.0 158 264-466 27-186 (191)
173 3lxx_A GTPase IMAP family memb 99.6 1.7E-15 5.7E-20 147.4 9.9 163 263-466 26-208 (239)
174 3c5h_A Glucocorticoid receptor 99.6 7.5E-16 2.6E-20 152.1 7.3 88 367-466 162-249 (255)
175 1pui_A ENGB, probable GTP-bind 99.6 7.1E-15 2.4E-19 138.7 11.5 157 264-466 24-193 (210)
176 3def_A T7I23.11 protein; chlor 99.6 8.2E-15 2.8E-19 145.1 11.5 127 263-426 33-172 (262)
177 2ged_A SR-beta, signal recogni 99.6 4.2E-15 1.4E-19 138.3 8.0 130 264-437 46-186 (193)
178 2qtf_A Protein HFLX, GTP-bindi 99.5 3E-14 1E-18 148.4 14.3 159 267-466 180-348 (364)
179 1h65_A Chloroplast outer envel 99.5 3.5E-14 1.2E-18 141.1 12.5 120 264-420 37-169 (270)
180 1jwy_B Dynamin A GTPase domain 99.5 1.3E-14 4.3E-19 146.5 7.9 72 342-420 129-213 (315)
181 2j69_A Bacterial dynamin-like 99.5 3.1E-14 1E-18 160.0 10.1 114 344-466 174-319 (695)
182 2qag_A Septin-2, protein NEDD5 99.5 3.9E-14 1.3E-18 147.3 8.1 161 265-464 36-225 (361)
183 1wxq_A GTP-binding protein; st 99.5 5.7E-14 1.9E-18 147.9 9.4 37 344-380 71-114 (397)
184 3p32_A Probable GTPase RV1496/ 99.5 8.5E-14 2.9E-18 144.2 8.5 110 340-467 168-279 (355)
185 2x2e_A Dynamin-1; nitration, h 99.4 1.6E-13 5.6E-18 141.8 9.3 110 343-467 129-253 (353)
186 1udx_A The GTP-binding protein 99.4 2.1E-13 7.1E-18 144.4 9.1 154 267-466 158-319 (416)
187 3t34_A Dynamin-related protein 99.4 1.9E-13 6.7E-18 141.4 7.7 107 342-464 134-253 (360)
188 2wsm_A Hydrogenase expression/ 99.4 5.9E-13 2E-17 126.9 9.2 102 342-466 107-208 (221)
189 2qpt_A EH domain-containing pr 99.4 4E-13 1.4E-17 147.0 8.5 79 344-432 154-243 (550)
190 2www_A Methylmalonic aciduria 99.4 7.1E-13 2.4E-17 137.2 8.7 109 341-467 164-274 (349)
191 2p67_A LAO/AO transport system 99.4 1.1E-12 3.7E-17 135.2 9.7 109 341-467 146-256 (341)
192 3zvr_A Dynamin-1; hydrolase, D 99.3 6.9E-13 2.4E-17 149.3 5.5 110 343-467 149-273 (772)
193 1cip_A Protein (guanine nucleo 99.3 1.6E-12 5.5E-17 134.8 7.8 131 336-466 185-338 (353)
194 2qnr_A Septin-2, protein NEDD5 99.3 3.5E-12 1.2E-16 129.3 9.6 163 265-466 17-208 (301)
195 1yrb_A ATP(GTP)binding protein 99.3 1E-11 3.5E-16 121.5 12.2 113 344-466 109-251 (262)
196 1zcb_A G alpha I/13; GTP-bindi 99.3 3.8E-12 1.3E-16 132.5 9.6 130 337-466 194-347 (362)
197 3ohm_A Guanine nucleotide-bind 99.3 3.5E-12 1.2E-16 130.9 7.4 134 333-466 156-312 (327)
198 2qag_C Septin-7; cell cycle, c 99.3 1.3E-11 4.3E-16 130.8 11.4 162 265-466 30-221 (418)
199 4fid_A G protein alpha subunit 99.2 6.1E-12 2.1E-16 129.7 6.0 136 331-466 148-322 (340)
200 4a9a_A Ribosome-interacting GT 99.2 9.2E-12 3.1E-16 130.1 5.4 118 265-418 71-195 (376)
201 1jal_A YCHF protein; nucleotid 99.2 3.3E-11 1.1E-15 125.3 8.0 36 344-379 66-108 (363)
202 2hf9_A Probable hydrogenase ni 99.1 1.6E-10 5.4E-15 110.3 9.7 100 344-466 119-218 (226)
203 2dby_A GTP-binding protein; GD 99.1 8.9E-11 3E-15 122.4 7.2 37 343-379 68-111 (368)
204 2qm8_A GTPase/ATPase; G protei 99.1 5.1E-10 1.7E-14 115.2 11.3 110 341-467 145-256 (337)
205 3ec1_A YQEH GTPase; atnos1, at 98.9 4.2E-10 1.4E-14 117.2 3.2 150 267-463 163-322 (369)
206 2qag_B Septin-6, protein NEDD5 98.8 8.9E-09 3.1E-13 109.0 11.0 137 266-441 42-210 (427)
207 3sop_A Neuronal-specific septi 98.8 2.4E-08 8.2E-13 99.6 12.4 142 267-442 3-175 (270)
208 3h2y_A GTPase family protein; 98.8 9.2E-10 3.1E-14 114.6 1.9 151 267-463 161-321 (368)
209 2j37_W Signal recognition part 98.8 5.8E-09 2E-13 112.8 7.6 116 342-469 182-310 (504)
210 1azs_C GS-alpha; complex (lyas 98.8 5E-09 1.7E-13 110.3 6.4 130 337-466 210-379 (402)
211 2xtz_A Guanine nucleotide-bind 98.8 5.7E-09 1.9E-13 108.2 6.3 125 342-466 181-339 (354)
212 1u0l_A Probable GTPase ENGC; p 98.8 1.8E-08 6.2E-13 101.8 9.5 104 345-466 64-167 (301)
213 2ohf_A Protein OLA1, GTP-bindi 98.6 2.5E-08 8.6E-13 104.7 5.0 36 344-379 86-128 (396)
214 1nj3_A NPL4; NZF domain, rubre 98.6 2.3E-08 7.8E-13 67.0 2.2 26 49-74 5-30 (31)
215 1tq4_A IIGP1, interferon-induc 98.5 4.7E-07 1.6E-11 95.6 12.8 162 265-466 68-247 (413)
216 2d9g_A YY1-associated factor 2 98.5 3.3E-08 1.1E-12 74.3 2.7 33 44-76 5-37 (53)
217 3a9j_C Mitogen-activated prote 98.5 4.2E-08 1.4E-12 67.0 2.2 28 48-75 6-33 (34)
218 3dm5_A SRP54, signal recogniti 98.5 4.3E-07 1.5E-11 96.6 10.2 96 342-463 181-282 (443)
219 2yv5_A YJEQ protein; hydrolase 98.4 8E-07 2.7E-11 89.8 9.9 98 354-466 66-163 (302)
220 2v3c_C SRP54, signal recogniti 98.4 1.1E-06 3.6E-11 93.4 11.1 108 342-468 179-307 (432)
221 2crc_A Ubiquitin conjugating e 98.4 2.4E-07 8.1E-12 69.2 3.9 31 47-77 7-37 (52)
222 3l82_B F-box only protein 4; T 98.4 3.7E-07 1.3E-11 87.8 6.1 108 345-464 97-215 (227)
223 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 5.4E-07 1.8E-11 94.5 6.1 87 265-379 19-127 (392)
224 3b08_B Ranbp-type and C3HC4-ty 98.3 3.3E-07 1.1E-11 71.1 3.0 30 49-78 7-36 (64)
225 3kl4_A SRP54, signal recogniti 98.3 1.9E-06 6.5E-11 91.4 9.9 95 342-462 178-280 (433)
226 1j8m_F SRP54, signal recogniti 98.2 1.7E-05 5.7E-10 80.1 13.9 96 342-463 179-282 (297)
227 1puj_A YLQF, conserved hypothe 98.1 2.6E-06 8.8E-11 85.4 5.9 97 348-466 3-100 (282)
228 1puj_A YLQF, conserved hypothe 98.1 2.2E-06 7.6E-11 85.8 4.4 26 264-289 118-143 (282)
229 3h2y_A GTPase family protein; 98.0 4.2E-06 1.4E-10 86.9 5.4 100 353-466 55-154 (368)
230 3ec1_A YQEH GTPase; atnos1, at 98.0 3.1E-06 1E-10 88.0 4.2 100 353-466 57-156 (369)
231 1f5n_A Interferon-induced guan 98.0 4.5E-06 1.6E-10 91.8 5.0 28 263-290 35-62 (592)
232 3e70_C DPA, signal recognition 98.0 5.5E-05 1.9E-09 77.4 12.7 94 343-463 211-311 (328)
233 3l2o_B F-box only protein 4; s 97.9 9.7E-06 3.3E-10 81.5 5.0 101 352-464 195-300 (312)
234 3cnl_A YLQF, putative uncharac 97.8 8.2E-06 2.8E-10 80.8 2.5 23 267-289 100-122 (262)
235 2yhs_A FTSY, cell division pro 97.7 7.8E-05 2.7E-09 80.2 9.7 27 264-290 291-317 (503)
236 2xxa_A Signal recognition part 97.7 5E-05 1.7E-09 80.6 6.9 66 342-418 182-253 (433)
237 3cnl_A YLQF, putative uncharac 97.6 1.5E-05 5.1E-10 78.9 2.3 93 351-468 4-97 (262)
238 1t9h_A YLOQ, probable GTPase E 97.6 0.00014 4.9E-09 73.7 9.3 89 363-465 82-170 (307)
239 3gj3_B Nuclear pore complex pr 97.6 2.3E-05 7.9E-10 52.9 1.6 29 47-75 4-32 (33)
240 1zu4_A FTSY; GTPase, signal re 97.5 0.0003 1E-08 71.6 9.0 26 265-290 104-129 (320)
241 3szr_A Interferon-induced GTP- 97.3 0.00033 1.1E-08 77.3 8.1 22 268-289 47-68 (608)
242 1rj9_A FTSY, signal recognitio 97.3 0.00023 7.8E-09 72.0 5.9 26 265-290 101-126 (304)
243 2px0_A Flagellar biosynthesis 97.3 0.00035 1.2E-08 70.2 6.8 24 266-289 105-128 (296)
244 1vma_A Cell division protein F 97.2 0.0013 4.5E-08 66.5 10.4 26 265-290 103-128 (306)
245 2ebq_A Nuclear pore complex pr 97.2 0.00022 7.5E-09 51.9 3.2 35 43-77 4-38 (47)
246 2ffh_A Protein (FFH); SRP54, s 97.2 0.001 3.4E-08 70.4 9.4 26 265-290 97-122 (425)
247 4dzz_A Plasmid partitioning pr 97.2 0.0019 6.6E-08 59.7 10.3 66 342-418 74-143 (206)
248 1ls1_A Signal recognition part 97.0 0.0034 1.2E-07 62.9 11.4 26 265-290 97-122 (295)
249 3q5d_A Atlastin-1; G protein, 96.9 0.0021 7.3E-08 68.3 8.7 26 264-289 65-90 (447)
250 1w7p_D VPS36P, YLR417W; ESCRT- 96.9 0.00016 5.6E-09 78.5 0.0 27 50-76 180-206 (566)
251 3gj5_B Nuclear pore complex pr 96.8 0.00039 1.3E-08 47.1 1.6 29 47-75 4-32 (34)
252 2ebr_A Nuclear pore complex pr 96.7 0.0013 4.4E-08 47.9 3.8 32 46-77 7-38 (47)
253 2rcn_A Probable GTPase ENGC; Y 96.6 0.0058 2E-07 63.1 9.1 85 364-464 127-211 (358)
254 3b9q_A Chloroplast SRP recepto 96.6 0.0035 1.2E-07 63.2 7.3 26 265-290 99-124 (302)
255 3cwq_A Para family chromosome 96.5 0.02 6.9E-07 53.9 11.9 66 342-418 66-133 (209)
256 2og2_A Putative signal recogni 96.5 0.0046 1.6E-07 63.9 7.6 26 265-290 156-181 (359)
257 1bif_A 6-phosphofructo-2-kinas 96.0 0.00079 2.7E-08 71.7 -1.0 26 264-289 37-62 (469)
258 3k9g_A PF-32 protein; ssgcid, 96.0 0.034 1.2E-06 53.9 10.6 65 342-416 143-208 (267)
259 3gj7_B Nuclear pore complex pr 95.9 0.0026 8.8E-08 53.7 1.6 29 47-75 69-97 (98)
260 3end_A Light-independent proto 95.8 0.037 1.3E-06 54.8 10.0 67 342-417 155-225 (307)
261 1t9h_A YLOQ, probable GTPase E 95.4 0.0033 1.1E-07 63.6 0.8 23 267-289 174-196 (307)
262 1ye8_A Protein THEP1, hypothet 95.4 0.007 2.4E-07 56.0 2.8 23 268-290 2-24 (178)
263 1lvg_A Guanylate kinase, GMP k 95.2 0.0073 2.5E-07 56.5 2.3 23 267-289 5-27 (198)
264 1kgd_A CASK, peripheral plasma 95.2 0.0093 3.2E-07 54.7 3.0 23 267-289 6-28 (180)
265 2ebv_A Nuclear pore complex pr 95.1 0.01 3.6E-07 44.8 2.4 29 47-75 28-56 (57)
266 3gj7_B Nuclear pore complex pr 95.0 0.0042 1.4E-07 52.4 0.0 31 47-77 6-36 (98)
267 3tr0_A Guanylate kinase, GMP k 94.9 0.011 3.7E-07 54.6 2.5 24 267-290 8-31 (205)
268 3a00_A Guanylate kinase, GMP k 94.8 0.011 3.7E-07 54.4 2.5 23 268-290 3-25 (186)
269 1znw_A Guanylate kinase, GMP k 94.8 0.011 3.9E-07 55.3 2.5 23 268-290 22-44 (207)
270 3c8u_A Fructokinase; YP_612366 94.8 0.014 5E-07 54.6 3.2 25 266-290 22-46 (208)
271 1zp6_A Hypothetical protein AT 94.7 0.015 5.1E-07 53.1 3.0 23 267-289 10-32 (191)
272 3ney_A 55 kDa erythrocyte memb 94.7 0.015 5.2E-07 55.0 3.0 27 264-290 17-43 (197)
273 1z6g_A Guanylate kinase; struc 94.6 0.013 4.5E-07 55.6 2.5 23 268-290 25-47 (218)
274 2lk0_A RNA-binding protein 5; 94.4 0.013 4.4E-07 39.1 1.3 28 48-75 3-30 (32)
275 1knq_A Gluconate kinase; ALFA/ 94.4 0.022 7.4E-07 51.4 3.3 27 265-291 7-33 (175)
276 1s96_A Guanylate kinase, GMP k 94.4 0.016 5.4E-07 55.5 2.5 24 267-290 17-40 (219)
277 3asz_A Uridine kinase; cytidin 94.4 0.019 6.4E-07 53.5 2.9 26 265-290 5-30 (211)
278 1qhx_A CPT, protein (chloramph 94.3 0.02 6.9E-07 51.6 2.8 25 266-290 3-27 (178)
279 2j41_A Guanylate kinase; GMP, 94.3 0.021 7.2E-07 52.6 3.0 25 266-290 6-30 (207)
280 4gp7_A Metallophosphoesterase; 94.3 0.017 5.7E-07 52.6 2.2 20 268-287 11-30 (171)
281 1tev_A UMP-CMP kinase; ploop, 94.3 0.021 7.2E-07 51.8 2.9 28 264-291 1-28 (196)
282 1kag_A SKI, shikimate kinase I 94.2 0.02 6.7E-07 51.4 2.6 25 267-291 5-29 (173)
283 1kht_A Adenylate kinase; phosp 94.2 0.02 6.8E-07 51.9 2.6 26 266-291 3-28 (192)
284 3tif_A Uncharacterized ABC tra 94.1 0.019 6.6E-07 55.4 2.4 23 268-290 33-55 (235)
285 4eun_A Thermoresistant glucoki 94.1 0.023 7.9E-07 52.8 2.9 26 266-291 29-54 (200)
286 1htw_A HI0065; nucleotide-bind 94.1 0.021 7.3E-07 51.8 2.5 23 268-290 35-57 (158)
287 2rcn_A Probable GTPase ENGC; Y 94.0 0.021 7.2E-07 58.9 2.7 24 267-290 216-239 (358)
288 3kjh_A CO dehydrogenase/acetyl 94.0 0.091 3.1E-06 49.5 7.0 65 342-416 130-194 (254)
289 3tau_A Guanylate kinase, GMP k 94.0 0.026 8.7E-07 53.0 2.9 24 267-290 9-32 (208)
290 3lw7_A Adenylate kinase relate 93.9 0.024 8.3E-07 50.1 2.6 24 267-291 2-25 (179)
291 2pcj_A ABC transporter, lipopr 93.9 0.021 7.3E-07 54.6 2.3 22 268-289 32-53 (224)
292 2jeo_A Uridine-cytidine kinase 93.9 0.03 1E-06 53.9 3.3 27 265-291 24-50 (245)
293 2bdt_A BH3686; alpha-beta prot 93.9 0.024 8.3E-07 51.8 2.5 21 268-288 4-24 (189)
294 2qor_A Guanylate kinase; phosp 93.9 0.023 8E-07 52.9 2.4 25 266-290 12-36 (204)
295 3kb2_A SPBC2 prophage-derived 93.9 0.027 9.2E-07 50.1 2.7 23 268-290 3-25 (173)
296 2plr_A DTMP kinase, probable t 93.8 0.029 9.8E-07 51.8 3.0 27 265-291 3-29 (213)
297 2bbw_A Adenylate kinase 4, AK4 93.8 0.027 9.1E-07 54.1 2.8 24 266-289 27-50 (246)
298 3t61_A Gluconokinase; PSI-biol 93.8 0.027 9.2E-07 52.2 2.7 25 267-291 19-43 (202)
299 1ex7_A Guanylate kinase; subst 93.8 0.025 8.7E-07 52.9 2.5 21 269-289 4-24 (186)
300 1ly1_A Polynucleotide kinase; 93.8 0.03 1E-06 50.2 2.9 22 267-288 3-24 (181)
301 4ido_A Atlastin-1; GTPase, GTP 93.7 0.19 6.6E-06 53.3 9.4 25 264-288 65-89 (457)
302 3b85_A Phosphate starvation-in 93.7 0.03 1E-06 53.1 2.9 22 268-289 24-45 (208)
303 2k1p_A Zinc finger RAN-binding 93.7 0.041 1.4E-06 36.9 2.7 29 47-75 3-31 (33)
304 2cbz_A Multidrug resistance-as 93.7 0.028 9.6E-07 54.3 2.7 23 267-289 32-54 (237)
305 3vaa_A Shikimate kinase, SK; s 93.7 0.031 1.1E-06 51.9 2.8 26 266-291 25-50 (199)
306 2onk_A Molybdate/tungstate ABC 93.6 0.028 9.5E-07 54.5 2.5 23 268-290 26-48 (240)
307 2rhm_A Putative kinase; P-loop 93.6 0.033 1.1E-06 50.7 2.9 25 266-290 5-29 (193)
308 1mv5_A LMRA, multidrug resista 93.6 0.03 1E-06 54.2 2.6 24 267-290 29-52 (243)
309 1cke_A CK, MSSA, protein (cyti 93.6 0.031 1.1E-06 52.4 2.7 25 267-291 6-30 (227)
310 2pze_A Cystic fibrosis transme 93.6 0.03 1E-06 53.7 2.6 23 267-289 35-57 (229)
311 2ff7_A Alpha-hemolysin translo 93.5 0.031 1E-06 54.4 2.7 24 267-290 36-59 (247)
312 1b0u_A Histidine permease; ABC 93.5 0.028 9.6E-07 55.2 2.4 24 267-290 33-56 (262)
313 1g6h_A High-affinity branched- 93.5 0.029 9.8E-07 54.9 2.4 24 267-290 34-57 (257)
314 3gfo_A Cobalt import ATP-bindi 93.5 0.029 1E-06 55.6 2.4 24 267-290 35-58 (275)
315 1sgw_A Putative ABC transporte 93.5 0.03 1E-06 53.4 2.4 22 268-289 37-58 (214)
316 4g1u_C Hemin import ATP-bindin 93.5 0.031 1E-06 55.1 2.5 24 267-290 38-61 (266)
317 2v9p_A Replication protein E1; 93.4 0.033 1.1E-06 56.2 2.7 24 267-290 127-150 (305)
318 1u0l_A Probable GTPase ENGC; p 93.4 0.032 1.1E-06 55.8 2.5 23 268-290 171-193 (301)
319 2ghi_A Transport protein; mult 93.4 0.034 1.2E-06 54.5 2.7 24 267-290 47-70 (260)
320 3uie_A Adenylyl-sulfate kinase 93.4 0.041 1.4E-06 51.0 3.1 25 266-290 25-49 (200)
321 3lnc_A Guanylate kinase, GMP k 93.4 0.033 1.1E-06 52.9 2.5 24 267-290 28-52 (231)
322 2d2e_A SUFC protein; ABC-ATPas 93.3 0.035 1.2E-06 54.0 2.8 22 268-289 31-52 (250)
323 1ji0_A ABC transporter; ATP bi 93.3 0.035 1.2E-06 53.7 2.7 23 268-290 34-56 (240)
324 2i3b_A HCR-ntpase, human cance 93.3 0.032 1.1E-06 52.2 2.3 23 268-290 3-25 (189)
325 3cm0_A Adenylate kinase; ATP-b 93.3 0.038 1.3E-06 50.1 2.8 25 266-290 4-28 (186)
326 3bos_A Putative DNA replicatio 93.3 0.25 8.6E-06 45.9 8.6 23 266-288 52-74 (242)
327 2yv5_A YJEQ protein; hydrolase 93.3 0.035 1.2E-06 55.6 2.7 21 267-287 166-186 (302)
328 2jaq_A Deoxyguanosine kinase; 93.3 0.037 1.3E-06 50.7 2.7 24 268-291 2-25 (205)
329 3trf_A Shikimate kinase, SK; a 93.3 0.039 1.3E-06 50.1 2.8 26 266-291 5-30 (185)
330 1np6_A Molybdopterin-guanine d 93.2 0.04 1.4E-06 50.8 2.8 23 267-289 7-29 (174)
331 2olj_A Amino acid ABC transpor 93.2 0.036 1.2E-06 54.5 2.6 24 267-290 51-74 (263)
332 2if2_A Dephospho-COA kinase; a 93.2 0.037 1.3E-06 51.1 2.6 22 267-288 2-23 (204)
333 2eyu_A Twitching motility prot 93.2 0.038 1.3E-06 54.2 2.7 22 268-289 27-48 (261)
334 2qi9_C Vitamin B12 import ATP- 93.2 0.037 1.3E-06 54.0 2.6 23 268-290 28-50 (249)
335 2zu0_C Probable ATP-dependent 93.2 0.038 1.3E-06 54.3 2.8 23 267-289 47-69 (267)
336 1y63_A LMAJ004144AAA protein; 93.2 0.042 1.4E-06 50.3 2.8 25 265-289 9-33 (184)
337 2ixe_A Antigen peptide transpo 93.1 0.038 1.3E-06 54.5 2.7 24 267-290 46-69 (271)
338 1vpl_A ABC transporter, ATP-bi 93.1 0.038 1.3E-06 54.1 2.6 24 267-290 42-65 (256)
339 2vli_A Antibiotic resistance p 93.1 0.039 1.3E-06 49.8 2.5 27 265-291 4-30 (183)
340 1g3q_A MIND ATPase, cell divis 93.1 0.22 7.5E-06 46.8 7.9 66 343-418 111-176 (237)
341 2ehv_A Hypothetical protein PH 93.1 0.038 1.3E-06 52.3 2.5 20 268-287 32-51 (251)
342 2ihy_A ABC transporter, ATP-bi 93.1 0.039 1.3E-06 54.7 2.6 24 267-290 48-71 (279)
343 3iij_A Coilin-interacting nucl 93.1 0.043 1.5E-06 49.7 2.7 26 265-290 10-35 (180)
344 3zvl_A Bifunctional polynucleo 93.0 0.082 2.8E-06 55.3 5.2 25 264-288 256-280 (416)
345 4a74_A DNA repair and recombin 93.0 0.038 1.3E-06 51.6 2.4 21 268-288 27-47 (231)
346 3aez_A Pantothenate kinase; tr 93.0 0.049 1.7E-06 54.9 3.3 27 264-290 88-114 (312)
347 1uf9_A TT1252 protein; P-loop, 93.0 0.045 1.5E-06 50.2 2.8 26 264-289 6-31 (203)
348 2v54_A DTMP kinase, thymidylat 93.0 0.046 1.6E-06 50.3 2.8 25 266-290 4-28 (204)
349 3gj8_B Nuclear pore complex pr 93.0 0.034 1.1E-06 46.2 1.7 29 47-75 62-90 (92)
350 1jjv_A Dephospho-COA kinase; P 93.0 0.045 1.5E-06 50.7 2.7 22 267-288 3-24 (206)
351 2yz2_A Putative ABC transporte 93.0 0.042 1.4E-06 54.0 2.7 23 268-290 35-57 (266)
352 1nks_A Adenylate kinase; therm 92.9 0.044 1.5E-06 49.6 2.6 24 268-291 3-26 (194)
353 2nq2_C Hypothetical ABC transp 92.9 0.042 1.4E-06 53.6 2.6 22 268-289 33-54 (253)
354 2wwf_A Thymidilate kinase, put 92.9 0.047 1.6E-06 50.5 2.8 25 265-289 9-33 (212)
355 2c95_A Adenylate kinase 1; tra 92.9 0.048 1.6E-06 49.7 2.8 27 265-291 8-34 (196)
356 2qt1_A Nicotinamide riboside k 92.9 0.051 1.7E-06 50.5 3.0 26 265-290 20-45 (207)
357 1nn5_A Similar to deoxythymidy 92.8 0.047 1.6E-06 50.5 2.7 25 265-289 8-32 (215)
358 2f1r_A Molybdopterin-guanine d 92.8 0.025 8.4E-07 52.1 0.7 22 268-289 4-25 (171)
359 3fb4_A Adenylate kinase; psych 92.8 0.047 1.6E-06 50.9 2.6 24 268-291 2-25 (216)
360 2yvu_A Probable adenylyl-sulfa 92.8 0.058 2E-06 49.2 3.2 26 264-289 11-36 (186)
361 3dl0_A Adenylate kinase; phosp 92.8 0.052 1.8E-06 50.7 2.9 24 268-291 2-25 (216)
362 3gj8_B Nuclear pore complex pr 92.7 0.021 7E-07 47.5 0.0 29 48-76 6-34 (92)
363 2cdn_A Adenylate kinase; phosp 92.7 0.055 1.9E-06 50.0 2.9 28 264-291 18-45 (201)
364 1aky_A Adenylate kinase; ATP:A 92.7 0.053 1.8E-06 50.9 2.8 26 266-291 4-29 (220)
365 2vp4_A Deoxynucleoside kinase; 92.7 0.066 2.3E-06 50.9 3.5 26 264-289 18-43 (230)
366 3nh6_A ATP-binding cassette SU 92.6 0.033 1.1E-06 56.1 1.4 25 265-289 79-103 (306)
367 3tlx_A Adenylate kinase 2; str 92.6 0.06 2.1E-06 51.8 3.2 26 265-290 28-53 (243)
368 3ec2_A DNA replication protein 92.6 0.046 1.6E-06 49.6 2.1 23 267-289 39-61 (180)
369 2ph1_A Nucleotide-binding prot 92.6 0.23 7.9E-06 48.0 7.3 67 342-417 127-194 (262)
370 2pjz_A Hypothetical protein ST 92.5 0.052 1.8E-06 53.4 2.6 23 268-290 32-54 (263)
371 1uj2_A Uridine-cytidine kinase 92.5 0.061 2.1E-06 51.9 3.1 28 264-291 20-47 (252)
372 4e22_A Cytidylate kinase; P-lo 92.4 0.062 2.1E-06 52.1 3.1 26 266-291 27-52 (252)
373 1gvn_B Zeta; postsegregational 92.4 0.065 2.2E-06 53.2 3.3 27 264-290 31-57 (287)
374 1zd8_A GTP:AMP phosphotransfer 92.4 0.059 2E-06 50.9 2.8 26 266-291 7-32 (227)
375 1lw7_A Transcriptional regulat 92.4 0.046 1.6E-06 55.9 2.1 26 266-291 170-195 (365)
376 1nij_A Hypothetical protein YJ 92.3 0.062 2.1E-06 54.0 3.0 24 266-289 4-27 (318)
377 1xjc_A MOBB protein homolog; s 92.3 0.063 2.2E-06 49.4 2.7 23 267-289 5-27 (169)
378 1odf_A YGR205W, hypothetical 3 92.3 0.07 2.4E-06 53.2 3.3 27 264-290 29-55 (290)
379 3tqc_A Pantothenate kinase; bi 92.3 0.071 2.4E-06 54.1 3.3 28 263-290 89-116 (321)
380 2kjq_A DNAA-related protein; s 92.2 0.067 2.3E-06 47.8 2.7 22 267-288 37-58 (149)
381 2bbs_A Cystic fibrosis transme 92.2 0.058 2E-06 53.9 2.5 23 267-289 65-87 (290)
382 1qf9_A UMP/CMP kinase, protein 92.2 0.075 2.5E-06 48.0 3.1 26 266-291 6-31 (194)
383 1ukz_A Uridylate kinase; trans 92.2 0.078 2.7E-06 48.9 3.2 26 266-291 15-40 (203)
384 1rz3_A Hypothetical protein rb 92.1 0.072 2.5E-06 49.5 3.0 24 266-289 22-45 (201)
385 2p5t_B PEZT; postsegregational 92.1 0.066 2.2E-06 51.8 2.7 27 264-290 30-56 (253)
386 2gza_A Type IV secretion syste 92.0 0.054 1.8E-06 55.6 2.1 23 267-289 176-198 (361)
387 2pt7_A CAG-ALFA; ATPase, prote 92.0 0.061 2.1E-06 54.6 2.5 22 268-289 173-194 (330)
388 1sq5_A Pantothenate kinase; P- 92.0 0.072 2.5E-06 53.3 3.0 26 265-290 79-104 (308)
389 1via_A Shikimate kinase; struc 91.9 0.063 2.2E-06 48.4 2.3 24 268-291 6-29 (175)
390 1hyq_A MIND, cell division inh 91.9 0.26 8.8E-06 47.3 6.8 66 343-418 110-175 (263)
391 1zak_A Adenylate kinase; ATP:A 91.9 0.063 2.1E-06 50.5 2.3 25 267-291 6-30 (222)
392 1vht_A Dephospho-COA kinase; s 91.9 0.078 2.7E-06 49.6 2.9 23 266-288 4-26 (218)
393 3tui_C Methionine import ATP-b 91.9 0.066 2.2E-06 55.4 2.5 23 268-290 56-78 (366)
394 3jvv_A Twitching mobility prot 91.8 0.07 2.4E-06 54.8 2.7 22 268-289 125-146 (356)
395 2bwj_A Adenylate kinase 5; pho 91.8 0.062 2.1E-06 49.0 2.1 26 266-291 12-37 (199)
396 2pt5_A Shikimate kinase, SK; a 91.8 0.075 2.6E-06 47.2 2.6 24 268-291 2-25 (168)
397 3sr0_A Adenylate kinase; phosp 91.8 0.36 1.2E-05 45.6 7.4 24 268-291 2-25 (206)
398 2pez_A Bifunctional 3'-phospho 91.7 0.084 2.9E-06 47.8 2.9 24 266-289 5-28 (179)
399 3io5_A Recombination and repai 91.6 0.67 2.3E-05 47.1 9.6 20 268-287 30-49 (333)
400 3fvq_A Fe(3+) IONS import ATP- 91.6 0.07 2.4E-06 55.0 2.4 23 268-290 32-54 (359)
401 3ug7_A Arsenical pump-driving 91.5 1 3.5E-05 45.7 11.1 85 368-462 237-325 (349)
402 1e4v_A Adenylate kinase; trans 91.5 0.081 2.8E-06 49.5 2.6 24 268-291 2-25 (214)
403 2pbr_A DTMP kinase, thymidylat 91.5 0.085 2.9E-06 47.8 2.6 22 268-289 2-23 (195)
404 2ewv_A Twitching motility prot 91.5 0.08 2.7E-06 54.6 2.7 23 267-289 137-159 (372)
405 1z47_A CYSA, putative ABC-tran 91.4 0.078 2.7E-06 54.6 2.5 23 268-290 43-65 (355)
406 3kta_A Chromosome segregation 91.3 0.086 2.9E-06 47.7 2.5 24 268-291 28-51 (182)
407 2yyz_A Sugar ABC transporter, 91.3 0.082 2.8E-06 54.5 2.5 23 268-290 31-53 (359)
408 1gtv_A TMK, thymidylate kinase 91.3 0.045 1.5E-06 50.7 0.5 22 268-289 2-23 (214)
409 3r20_A Cytidylate kinase; stru 91.3 0.092 3.1E-06 50.8 2.7 27 265-291 8-34 (233)
410 3rlf_A Maltose/maltodextrin im 91.2 0.084 2.9E-06 54.8 2.5 23 268-290 31-53 (381)
411 2it1_A 362AA long hypothetical 91.2 0.085 2.9E-06 54.4 2.5 23 268-290 31-53 (362)
412 1g29_1 MALK, maltose transport 91.1 0.086 2.9E-06 54.6 2.5 23 268-290 31-53 (372)
413 2z0h_A DTMP kinase, thymidylat 91.1 0.089 3E-06 47.9 2.4 22 268-289 2-23 (197)
414 3be4_A Adenylate kinase; malar 91.1 0.098 3.4E-06 49.1 2.7 25 267-291 6-30 (217)
415 2j9u_B VPS36, vacuolar protein 91.1 0.05 1.7E-06 43.2 0.5 26 50-75 17-51 (76)
416 3bh0_A DNAB-like replicative h 91.1 0.43 1.5E-05 47.8 7.6 22 268-289 70-91 (315)
417 1v43_A Sugar-binding transport 91.0 0.09 3.1E-06 54.4 2.5 24 267-290 38-61 (372)
418 2oap_1 GSPE-2, type II secreti 91.0 0.083 2.9E-06 57.0 2.3 24 266-289 260-283 (511)
419 1e6c_A Shikimate kinase; phosp 90.9 0.091 3.1E-06 46.8 2.2 24 268-291 4-27 (173)
420 2iyv_A Shikimate kinase, SK; t 90.9 0.091 3.1E-06 47.6 2.2 24 268-291 4-27 (184)
421 3a4m_A L-seryl-tRNA(SEC) kinas 90.9 0.11 3.7E-06 50.5 2.9 23 267-289 5-27 (260)
422 1n0z_A ZNF265; zinc finger, RN 90.9 0.17 5.9E-06 36.3 3.2 30 47-76 11-42 (45)
423 2x8a_A Nuclear valosin-contain 90.8 0.1 3.5E-06 51.4 2.6 23 269-291 47-69 (274)
424 1p9r_A General secretion pathw 90.8 0.094 3.2E-06 55.1 2.5 22 268-289 169-190 (418)
425 3ea0_A ATPase, para family; al 90.8 0.41 1.4E-05 45.0 6.8 66 343-418 118-185 (245)
426 3ake_A Cytidylate kinase; CMP 90.8 0.12 4.1E-06 47.4 2.9 24 268-291 4-27 (208)
427 2w0m_A SSO2452; RECA, SSPF, un 90.8 0.1 3.5E-06 48.5 2.5 22 268-289 25-46 (235)
428 1zuh_A Shikimate kinase; alpha 90.7 0.12 4E-06 46.2 2.7 25 267-291 8-32 (168)
429 1jbk_A CLPB protein; beta barr 90.7 0.13 4.3E-06 45.8 2.9 23 266-288 43-65 (195)
430 1ak2_A Adenylate kinase isoenz 90.5 0.13 4.3E-06 48.9 2.9 26 266-291 16-41 (233)
431 1ixz_A ATP-dependent metallopr 90.5 0.12 4E-06 49.6 2.6 23 268-290 51-73 (254)
432 2ze6_A Isopentenyl transferase 90.5 0.11 3.8E-06 50.4 2.5 24 268-291 3-26 (253)
433 2xb4_A Adenylate kinase; ATP-b 90.4 0.12 4.1E-06 48.9 2.6 23 268-290 2-24 (223)
434 1q3t_A Cytidylate kinase; nucl 90.4 0.14 4.6E-06 48.8 3.0 30 262-291 12-41 (236)
435 3qf4_B Uncharacterized ABC tra 90.3 0.14 4.8E-06 56.1 3.5 27 263-289 378-404 (598)
436 3nwj_A ATSK2; P loop, shikimat 90.3 0.1 3.5E-06 50.9 2.1 26 266-291 48-73 (250)
437 3gd7_A Fusion complex of cysti 90.3 0.11 3.7E-06 54.1 2.4 24 267-290 48-71 (390)
438 3d31_A Sulfate/molybdate ABC t 90.3 0.079 2.7E-06 54.3 1.3 23 268-290 28-50 (348)
439 1m7g_A Adenylylsulfate kinase; 90.2 0.15 5E-06 47.6 3.0 24 266-289 25-48 (211)
440 2f6r_A COA synthase, bifunctio 90.2 0.13 4.5E-06 50.7 2.8 23 265-287 74-96 (281)
441 1cr0_A DNA primase/helicase; R 90.1 0.12 4.1E-06 50.9 2.4 22 268-289 37-58 (296)
442 3la6_A Tyrosine-protein kinase 90.1 0.65 2.2E-05 45.9 7.8 67 343-418 201-267 (286)
443 3umf_A Adenylate kinase; rossm 90.1 0.17 5.9E-06 48.3 3.4 28 264-291 27-54 (217)
444 2h92_A Cytidylate kinase; ross 90.0 0.13 4.5E-06 47.9 2.5 27 265-291 2-28 (219)
445 2vhj_A Ntpase P4, P4; non- hyd 89.8 0.13 4.4E-06 52.4 2.4 21 268-288 125-145 (331)
446 1oxx_K GLCV, glucose, ABC tran 89.7 0.076 2.6E-06 54.6 0.6 23 268-290 33-55 (353)
447 2npi_A Protein CLP1; CLP1-PCF1 89.7 0.12 4.2E-06 54.9 2.2 23 268-290 140-162 (460)
448 2obl_A ESCN; ATPase, hydrolase 89.6 0.14 4.9E-06 52.3 2.6 24 267-290 72-95 (347)
449 2cvh_A DNA repair and recombin 89.4 0.16 5.4E-06 47.0 2.5 21 268-288 22-42 (220)
450 1iy2_A ATP-dependent metallopr 89.4 0.15 5.2E-06 49.6 2.5 23 268-290 75-97 (278)
451 1n0w_A DNA repair protein RAD5 89.3 0.16 5.4E-06 47.8 2.5 21 268-288 26-46 (243)
452 1yqt_A RNAse L inhibitor; ATP- 89.2 0.16 5.5E-06 55.0 2.8 24 267-290 48-71 (538)
453 2yl4_A ATP-binding cassette SU 89.2 0.16 5.5E-06 55.5 2.8 25 265-289 369-393 (595)
454 4a1f_A DNAB helicase, replicat 89.1 0.51 1.7E-05 48.1 6.3 69 345-415 129-205 (338)
455 4eaq_A DTMP kinase, thymidylat 89.1 0.2 6.9E-06 47.9 3.0 27 265-291 25-51 (229)
456 3b60_A Lipid A export ATP-bind 89.0 0.16 5.4E-06 55.4 2.5 25 265-289 368-392 (582)
457 2p65_A Hypothetical protein PF 88.9 0.16 5.4E-06 45.1 2.1 23 266-288 43-65 (187)
458 1in4_A RUVB, holliday junction 88.9 0.17 5.8E-06 51.0 2.5 24 267-290 52-75 (334)
459 1ltq_A Polynucleotide kinase; 88.8 0.2 6.7E-06 49.2 2.9 22 267-288 3-24 (301)
460 2grj_A Dephospho-COA kinase; T 88.7 0.22 7.4E-06 46.5 3.0 26 264-289 10-35 (192)
461 1p5z_B DCK, deoxycytidine kina 88.7 0.17 5.8E-06 49.0 2.3 27 264-290 22-48 (263)
462 3b5x_A Lipid A export ATP-bind 88.7 0.17 5.9E-06 55.1 2.6 26 264-289 367-392 (582)
463 1a7j_A Phosphoribulokinase; tr 88.7 0.18 6.3E-06 50.0 2.5 24 266-289 5-28 (290)
464 4a82_A Cystic fibrosis transme 88.6 0.15 5.2E-06 55.5 2.1 25 265-289 366-390 (578)
465 3euj_A Chromosome partition pr 88.6 0.18 6.1E-06 54.0 2.5 24 267-290 30-53 (483)
466 1v5w_A DMC1, meiotic recombina 88.6 1.3 4.5E-05 44.8 8.9 23 267-289 123-145 (343)
467 1lv7_A FTSH; alpha/beta domain 88.5 0.22 7.5E-06 47.7 3.0 24 266-289 45-68 (257)
468 3ozx_A RNAse L inhibitor; ATP 88.4 0.18 6.1E-06 54.7 2.4 23 268-290 27-49 (538)
469 2w58_A DNAI, primosome compone 88.4 0.22 7.6E-06 45.7 2.8 23 267-289 55-77 (202)
470 1f2t_A RAD50 ABC-ATPase; DNA d 88.3 0.21 7.4E-06 44.4 2.5 21 268-288 25-45 (149)
471 2q6t_A DNAB replication FORK h 88.3 0.65 2.2E-05 48.7 6.6 22 268-289 202-223 (444)
472 3a8t_A Adenylate isopentenyltr 88.2 1.1 3.8E-05 45.6 8.0 24 267-290 41-64 (339)
473 2zr9_A Protein RECA, recombina 88.1 0.52 1.8E-05 48.1 5.5 22 267-288 62-83 (349)
474 2dpy_A FLII, flagellum-specifi 88.0 0.21 7.2E-06 52.7 2.6 24 267-290 158-181 (438)
475 3qf4_A ABC transporter, ATP-bi 88.0 0.18 6.3E-06 55.0 2.2 24 266-289 369-392 (587)
476 3j16_B RLI1P; ribosome recycli 88.0 0.2 6.9E-06 55.1 2.5 23 268-290 105-127 (608)
477 1xp8_A RECA protein, recombina 87.8 0.52 1.8E-05 48.5 5.3 21 268-288 76-96 (366)
478 3bk7_A ABC transporter ATP-bin 87.7 0.22 7.5E-06 54.8 2.6 23 268-290 119-141 (607)
479 3qf7_A RAD50; ABC-ATPase, ATPa 87.7 0.22 7.6E-06 51.1 2.5 21 269-289 26-46 (365)
480 1u94_A RECA protein, recombina 87.5 0.48 1.6E-05 48.6 4.8 22 267-288 64-85 (356)
481 2b8t_A Thymidine kinase; deoxy 87.4 0.7 2.4E-05 44.2 5.7 22 267-288 13-34 (223)
482 1yqt_A RNAse L inhibitor; ATP- 87.2 0.26 8.7E-06 53.4 2.8 23 267-289 313-335 (538)
483 3bfv_A CAPA1, CAPB2, membrane 87.2 0.82 2.8E-05 44.7 6.2 67 343-418 191-257 (271)
484 2ocp_A DGK, deoxyguanosine kin 87.2 0.28 9.5E-06 46.7 2.7 25 266-290 2-26 (241)
485 2cr8_A MDM4 protein; ZF-ranbp 87.2 0.44 1.5E-05 34.8 3.0 32 50-81 11-42 (53)
486 4f4c_A Multidrug resistance pr 87.2 0.24 8.2E-06 59.3 2.7 29 261-289 1100-1128(1321)
487 3exa_A TRNA delta(2)-isopenten 87.1 0.29 1E-05 49.6 2.9 26 265-290 2-27 (322)
488 3q9l_A Septum site-determining 87.1 0.67 2.3E-05 44.0 5.4 66 343-418 113-186 (260)
489 1svm_A Large T antigen; AAA+ f 87.0 0.3 1E-05 50.6 3.0 25 266-290 169-193 (377)
490 3ozx_A RNAse L inhibitor; ATP 86.9 0.26 9E-06 53.4 2.6 23 268-290 296-318 (538)
491 3io3_A DEHA2D07832P; chaperone 86.8 4.1 0.00014 41.4 11.3 84 369-462 232-322 (348)
492 1nlf_A Regulatory protein REPA 86.8 0.27 9.2E-06 47.9 2.4 23 266-288 30-52 (279)
493 2c6a_A Ubiquitin-protein ligas 86.7 0.29 1E-05 35.0 1.9 31 49-79 12-42 (46)
494 1njg_A DNA polymerase III subu 86.7 0.29 9.9E-06 44.9 2.5 22 268-289 47-68 (250)
495 3bk7_A ABC transporter ATP-bin 86.6 0.29 9.8E-06 53.9 2.8 23 267-289 383-405 (607)
496 1ihu_A Arsenical pump-driving 86.6 1.9 6.5E-05 46.8 9.3 177 262-462 4-288 (589)
497 3cio_A ETK, tyrosine-protein k 86.0 1.3 4.5E-05 43.9 7.0 67 343-418 213-279 (299)
498 2chg_A Replication factor C sm 85.9 0.34 1.2E-05 44.0 2.5 21 268-288 40-60 (226)
499 2dr3_A UPF0273 protein PH0284; 85.8 0.33 1.1E-05 45.6 2.3 21 268-288 25-45 (247)
500 3h4m_A Proteasome-activating n 85.7 0.4 1.4E-05 46.4 3.0 24 266-289 51-74 (285)
No 1
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.7e-30 Score=286.91 Aligned_cols=212 Identities=43% Similarity=0.740 Sum_probs=130.5
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..+..++|+|+|++|+|||||+++|++..+.+....+.+++..+...|+++|.+++.++....++.+|+|++.....+..
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 34568999999999999999999999999999888888888888889999999999999999999999999999988988
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
.+..++|||||||++|...+..++..+|++|||||+..+.++.++. ...++.+++.++..+++|++|||+||+|++.+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~-~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFL-ENGQTREHAYLLRALGISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSC-SCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccc-cchHHHHHHHHHHHcCCCeEEEEEecccccccc
Confidence 8999999999999999999999999999999999999875544442 146888999999999998899999999999766
Q ss_pred chhHHHHHHHHHHHH-HhcCCCCCCceEEEeccccCCCccccccccccCcccccc
Q 010071 422 KDRFDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQ 475 (519)
Q Consensus 422 ~e~le~i~e~l~~~l-~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~ 475 (519)
..+++.+.+++..++ +.+|+...+++||++||++|.||.+.... ..+.||.++
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~-~~~~w~~g~ 385 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSS-DLYKWYKGP 385 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCC-GGGGTCCSC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccccc-ccccccchH
Confidence 788888999999999 88898776789999999999999986543 247898773
No 2
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.96 E-value=6.2e-29 Score=265.33 Aligned_cols=209 Identities=43% Similarity=0.773 Sum_probs=187.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.+..++|+|+|++|+|||||+++|++..+.+......+++..+...++++|.+++.++....++.+|+|++.....+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc--cc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv--~~ 420 (519)
+..++|||||||++|...+..++..+|++|||||+..+.++.+++. ..++.+++.++..+++|++|+|+||+|+. .+
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~-~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCC-CchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 9999999999999999999999999999999999999865555542 36889999999999998899999999995 34
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCC-CceEEEeccccCCCccccccccccCcccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVTAPDDGIRGPVYWMQ 475 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~-~i~~IpvSA~tGegI~el~~~i~~~~w~~~~ 475 (519)
...+++++.+++..+++.+|+... ++++||+||++|+|+.++++ .+.||.++
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~---~~~w~~g~ 225 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD---FCPWYIGL 225 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc---cccccCch
Confidence 466788899999999999998643 57899999999999999875 47899774
No 3
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.95 E-value=8.1e-29 Score=267.27 Aligned_cols=213 Identities=39% Similarity=0.723 Sum_probs=164.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.+..+||+|+|++|+|||||+++|++..+.+....+.+++..+...|++++.+++.++....++.+|+|++.....+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 45679999999999999999999999988888888888888888889999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
+..+.|||||||++|...+..++..+|++|||||+..+.++.++. +..++.+++.++..++++|+|||+||+|+..+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~-~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD-LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CC-CCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccc-hhhhHHHHHHHHHHcCCCcEEEEEECcCcccchH
Confidence 999999999999999999999999999999999999886655543 4578999999999999888999999999997667
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQL 476 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~ 476 (519)
..++++.+++..+++.+++...+++||++||++|+||.+++.....+.||.++.
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~ 242 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPN 242 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCC
Confidence 888899999999999999877678999999999999999876544467988743
No 4
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.6e-28 Score=270.37 Aligned_cols=212 Identities=39% Similarity=0.731 Sum_probs=189.8
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.+..++|+|+|++|+|||||+++|++..+.+....+.+++..+...|++++.+++.++....++.+|+|++.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 45679999999999999999999999988888888888888999999999999999999999999999999888888899
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
+..++|||||||++|...+..++..+|++|+|||++.+.++.++. +..++.+++.++..++++++|||+||+|+..+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~-~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD-LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCC-TTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccch-hhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 999999999999999999999999999999999999865444443 3568899999999999888999999999997667
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCcccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQ 475 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~ 475 (519)
.+++++.+.+..++..+|+...+++||++||++|.||.++......+.||.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~ 375 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGP 375 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCC
Confidence 78888999999999999987767899999999999999987655457899874
No 5
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.94 E-value=4.1e-27 Score=252.53 Aligned_cols=207 Identities=45% Similarity=0.832 Sum_probs=177.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.+..++|+++|++|+|||||+++|++..+.+..+.+..++..+...|++++.+++.++....++.+|+|++.....+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 34678999999999999999999998877777777788888888999999999999999999999999998888888889
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
...++|||||||++|...+..++..+|++|||||+..+.++.+|+. ..++.+++.++...++|++|||+||+|+..++.
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~-~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISK-DGQTREHALLAFTLGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCT-TSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCH
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCc-chhHHHHHHHHHHcCCCeEEEEEEccccccCCH
Confidence 9999999999999999999999999999999999997632222221 137788888888888888999999999986566
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCcccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYW 473 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~ 473 (519)
++++.+.+++..+++.+++...+++++|+||++|+|+.++.. .+.||.
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~---~~~~~~ 210 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT---NAPWYK 210 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS---SCTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccc---cCchhh
Confidence 778888899999999998865557899999999999998864 267885
No 6
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.94 E-value=5e-27 Score=250.18 Aligned_cols=207 Identities=45% Similarity=0.740 Sum_probs=170.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+++|++|+|||||+++|++..+.+....+..++..+...|.+++.+++.++....++.+|+|++.....+.+..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999988777777777777777888899999999999999999999999998888888999
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc--cc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~--~~ 421 (519)
..+.|||||||++|...+..++..+|++|+|||+..+.++..+ .+..++.+++.++..++++++|||+||+|+.. ++
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~-~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGM-SVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHH-STTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCcccccc-ccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 9999999999999999999999999999999999986443222 24568899999999999888999999999986 34
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWM 474 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~ 474 (519)
.++++.+.+++..+++.+++...+++++|+||++|+||.+++.. +.||.+
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~---~~~~~g 212 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSEN---MKWYNG 212 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSS---CTTCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccc---cccccc
Confidence 56778889999999999998766689999999999999998763 578866
No 7
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.94 E-value=4.6e-27 Score=252.71 Aligned_cols=211 Identities=43% Similarity=0.742 Sum_probs=142.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
+..++|+++|++++|||||+++|++..+.+....+.++...+...|+.++.+++.++....++.+|+|+......+...+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45789999999999999999999988887777777777777777788888889999999999999999998888888889
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc--cc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~--~~ 421 (519)
..++|||||||++|...+..++..+|++|||||+..+.++.+|+. ..++.+++.++...++|++|||+||+|+.. ++
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~-~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER-GGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTST-TCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCC-CCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 999999999999999999999999999999999998854444432 257788888888889888999999999953 44
Q ss_pred chhHHHHHHHHHHHHHhc-CCC-CCCceEEEeccccCCCccccccccccCccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSC-GFK-DASLTWIPLSALENQNLVTAPDDGIRGPVYWMQL 476 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~-g~~-~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~ 476 (519)
.++++.+.+++..+++.. ++. ..++++||+||++|.||.++++.. .+.||.++.
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~-~~~w~~g~~ 255 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSS-VCPWYQGPS 255 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTT-TCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccc-cCccccchh
Confidence 567888888999999887 875 234789999999999999998532 478998743
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.94 E-value=3.6e-26 Score=243.36 Aligned_cols=202 Identities=34% Similarity=0.572 Sum_probs=155.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhC--CCccchhhcccccccccccceEEEEEEEeecC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQG--KGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g--~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
+..++|+|+|++|+|||||+++|++..+.+.......+.......+ ...+.+++.++....++.+|+|++.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4568999999999999999999998776665554433333332222 24566778889999999999999988888898
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
....+.|||||||++|...+..++..+|++|||+|+..+ ...++.+++.++..++++|+|+|+||+|+..+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g--------~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG--------VQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc
Confidence 999999999999999999999999999999999999987 456888888888888888899999999998655
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQL 476 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~ 476 (519)
.++++.+.+++..+++.+++....++++++||++|+||.+++.. +.||.++.
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~---~~w~~g~~ 225 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER---SPWYAGQS 225 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT---CTTCCSCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc---CccccCch
Confidence 56677788889999888884344578999999999999999863 68987753
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.89 E-value=4.4e-23 Score=217.18 Aligned_cols=170 Identities=36% Similarity=0.551 Sum_probs=140.4
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+.++|+++|++++|||||+++|++... ..+...+...+.++....++.+|+|+......+.....
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 66 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILA---------------EGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHH---------------HTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSC
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhh---------------hcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCe
Confidence 468999999999999999999985321 11222222223466777888899999988888888889
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010071 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.++|||||||++|...+..++..+|++|+|||++.+ ...++.+++.++...++|++|+|+||+|+.. ..+.
T Consensus 67 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~~ 137 (397)
T 1d2e_A 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG--------PMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSEM 137 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHHH
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CHHH
Confidence 999999999999999999999999999999999987 4578888888888888887889999999984 3455
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCC
Q 010071 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN 458 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGeg 458 (519)
++.+.+++..+++.+++....++++++||++|.|
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 138 VELVELEIRELLTEFGYKGEETPIIVGSALCALE 171 (397)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCcccCcEEEeehhhccc
Confidence 6677788889999988876668999999999987
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=1.1e-22 Score=214.61 Aligned_cols=175 Identities=33% Similarity=0.512 Sum_probs=141.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCC-CccchhhcccccccccccceEEEEEEEeecC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK-GSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~-~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
.+..++|+|+|++|+|||||+++|++... ..+. ..+.....++....++.+|+|+......+..
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 72 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAA---------------AENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHH---------------HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhh---------------hcCccccccchhhccCCHHHHHcCCCEEeeeeEecc
Confidence 45678999999999999999999985311 0111 1121122466677788899998888888888
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
....++|||||||++|...+..++..+|++|+|+|+..+ ...++.+++.++...++|++|+|+||+|+.. .
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~ 143 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFMNKVDMVD-D 143 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC--------CCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-C
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEECccccC-c
Confidence 889999999999999999999999999999999999987 4467888888888888887899999999984 3
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~e 461 (519)
.+.++.+.+++..+++.+++...+++++++||++|.|+.+
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~ 183 (405)
T 2c78_A 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMH 183 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhc
Confidence 4456677788888998888865668999999999998543
No 11
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=2.7e-22 Score=216.50 Aligned_cols=168 Identities=30% Similarity=0.498 Sum_probs=128.7
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..|+.++|+++|++++|||||+++|++... ...++....++.+|+|++..+..+..
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~------------------------~~~~d~~~~e~~~GiTi~~~~~~~~~ 70 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIAS------------------------TSAHDKLPESQKRGITIDIGFSAFKL 70 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------------CCCEEEE
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCc------------------------ccccccccccccCccEEecceEEEEE
Confidence 457789999999999999999999984321 11245556677789998877777777
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
.+..++|||||||++|...+..++..+|++|||||+..+ ...++.+++.++..+++| +|+|+||+|+. .
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~~~ip-~IvviNK~Dl~--~ 139 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG--------PKTQTGEHMLILDHFNIP-IIVVITKSDNA--G 139 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-BCEEEECTTSS--C
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC--------ccHHHHHHHHHHHHcCCC-EEEEEECCCcc--c
Confidence 889999999999999999999999999999999999987 567889999999999988 59999999998 4
Q ss_pred chhHHHHHHHHHHHHHhc-CCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSC-GFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~-g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+.++.+.+++..+++.. ++. +++++++||++|+||.++++.+
T Consensus 140 ~~~~~~~~~~l~~~l~~~~~~~--~~~ii~vSA~~g~gI~~L~~~L 183 (482)
T 1wb1_A 140 TEEIKRTEMIMKSILQSTHNLK--NSSIIPISAKTGFGVDELKNLI 183 (482)
T ss_dssp HHHHHHHHHHHHHHHHHSSSGG--GCCEEECCTTTCTTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhcccc--cceEEEEECcCCCCHHHHHHHH
Confidence 556777888888888877 654 4688999999999999998754
No 12
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.86 E-value=1.1e-21 Score=207.29 Aligned_cols=164 Identities=32% Similarity=0.456 Sum_probs=124.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC-
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~- 341 (519)
++..++|+++|++++|||||+++|++.. .+....+..+|+|+...+..+..
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~----------------------------~~~~~~e~~~giTi~~~~~~~~~~ 58 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVW----------------------------TDTHSEELRRGITIKIGFADAEIR 58 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCC----------------------------CC--CGGGGSCSSSCCEEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCc----------------------------cccChhhhcCCcEEEEeeeeeecc
Confidence 4567899999999999999999998421 12233444566665433221111
Q ss_pred ----------------------CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccch-hHHHHHHHH
Q 010071 342 ----------------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTA-KGLTREHAQ 398 (519)
Q Consensus 342 ----------------------~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l-~~~~~e~l~ 398 (519)
....+.|||||||++|...+..++..+|++|||||+..+ . +.++.+++.
T Consensus 59 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g--------~~~~qt~e~l~ 130 (410)
T 1kk1_A 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP--------CPRPQTREHLM 130 (410)
T ss_dssp ECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC--------SSCHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCC--------CCChhHHHHHH
Confidence 026899999999999999999999999999999999976 3 578889998
Q ss_pred HHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 399 LIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 399 ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
++..++.+|+|+|+||+|+... .......+++..+++.... ..+++|++||++|+||.++++.+
T Consensus 131 ~~~~~~~~~iivviNK~Dl~~~--~~~~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g~gi~~L~~~l 194 (410)
T 1kk1_A 131 ALQIIGQKNIIIAQNKIELVDK--EKALENYRQIKEFIEGTVA--ENAPIIPISALHGANIDVLVKAI 194 (410)
T ss_dssp HHHHHTCCCEEEEEECGGGSCH--HHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHHHHHHH
T ss_pred HHHHcCCCcEEEEEECccCCCH--HHHHHHHHHHHHHHHhcCc--CCCeEEEeeCCCCCCHHHHHHHH
Confidence 8888888889999999999843 3333445566666654332 34689999999999999998765
No 13
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.85 E-value=2.5e-21 Score=187.66 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=108.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.+||+|+|.+|||||||+++|+.... .....++.|.........+....
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f-----------------------------~~~~~~Tig~d~~~k~~~~~~~~ 61 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSF-----------------------------DNTYQATIGIDFLSKTMYLEDRT 61 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC-----------------------------C----------CEEEEEECSSCE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCC-----------------------------CCCcCCccceEEEEEEEEecceE
Confidence 5678999999999999999999984211 00111222333333344455666
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.||||+|+++|...+..+++.++++|+|+|.+... +++.+ ..++..+.... ...|+|||+||+|+.....
T Consensus 62 v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~---Sf~~i---~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~ 135 (216)
T 4dkx_A 62 IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVN---SFQQT---TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ 135 (216)
T ss_dssp EEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHH---HHHTH---HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC
T ss_pred EEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhH---HHHHH---HHHHHHHHHhcCCCCeEEEEeeccchHhcCc
Confidence 78999999999999999999999999999999999763 33333 33333333222 2235999999999874322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.. .++...+.+.++ +.|+++||++|.||.++|+.+.
T Consensus 136 V~----~~e~~~~a~~~~-----~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 136 VS----IEEGERKAKELN-----VMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp SC----HHHHHHHHHHHT-----CEEEEEBTTTTBSHHHHHHHHH
T ss_pred cc----HHHHhhHHHHhC-----CeeEEEeCCCCcCHHHHHHHHH
Confidence 22 233444555555 4789999999999999998653
No 14
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.85 E-value=2e-21 Score=224.46 Aligned_cols=172 Identities=34% Similarity=0.504 Sum_probs=126.8
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..+..++|+|+|++++|||||+++|++... ..+...+...+.++....++++|+|+......+..
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~---------------~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~ 356 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHH---------------HHSCC---------------------CCSCEEEEC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhc---------------cccccccccccccccccccccCceeEEEEEEEEcC
Confidence 456789999999999999999999985321 11111111112456677788899999887777888
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
....++|||||||++|...+..++..+|++|||||+..+ ...++.+++.++...++|++|||+||+|+.. .
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG--------v~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d 427 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLGRQVGVPYIIVFLNKCDMVD-D 427 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC--------SCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-C
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc--------CcHHHHHHHHHHHHcCCCeEEEEEeeccccc-c
Confidence 889999999999999999999999999999999999987 3457788888888889888899999999984 3
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCC
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ 457 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGe 457 (519)
.+.++.+.+++..+++..++....++++++||++|.
T Consensus 428 ~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 428 EELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 463 (1289)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTT
T ss_pred hhhHHHHHHHHHHHHHhccccccceeEEEEEeccCC
Confidence 455677788889999999886667899999999993
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=2e-21 Score=205.11 Aligned_cols=166 Identities=31% Similarity=0.444 Sum_probs=114.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC-
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~- 341 (519)
++..++|+++|++++|||||+++|++.. .+....+..+|+|+...+..+..
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~----------------------------~~~~~~e~~~giTi~~~~~~~~~~ 56 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVW----------------------------TDRHSEELRRGISIRLGYADCEIR 56 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCC----------------------------CCC-------CCCCCCEEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCc----------------------------cccCcccccCCcEEEecccccccc
Confidence 4567899999999999999999998421 12223344455555433221110
Q ss_pred --------------C--------CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHH
Q 010071 342 --------------K--------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL 399 (519)
Q Consensus 342 --------------~--------~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~l 399 (519)
. ...+.|||||||++|...+..++..+|++|||+|++.+. ...++.+++.+
T Consensus 57 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~ 129 (408)
T 1s0u_A 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC-------PQPQTKEHLMA 129 (408)
T ss_dssp ECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCS-------SCHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCC-------CCchhHHHHHH
Confidence 1 268999999999999999999999999999999999761 15788888888
Q ss_pred HHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 400 IRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 400 l~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+..++.+|+|+|+||+|+... .......+++..+++.... .++++|++||++|+||.++++.+.
T Consensus 130 ~~~l~~~~iivv~NK~Dl~~~--~~~~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 130 LEILGIDKIIIVQNKIDLVDE--KQAEENYEQIKEFVKGTIA--ENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp HHHTTCCCEEEEEECTTSSCT--TTTTTHHHHHHHHHTTSTT--TTCCEEEC------CHHHHHHHHH
T ss_pred HHHcCCCeEEEEEEccCCCCH--HHHHHHHHHHHHHHhhcCC--CCCeEEEeeCCCCCCHHHHHHHHH
Confidence 888888789999999999853 2223344555666654332 346899999999999999987653
No 16
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.2e-20 Score=179.78 Aligned_cols=175 Identities=14% Similarity=0.131 Sum_probs=107.8
Q ss_pred CCCcccccCCCCcCCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccc
Q 010071 248 QYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327 (519)
Q Consensus 248 ~~~~e~~~~~~~~~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~ 327 (519)
+.-++.|++.....+..+.++|+|+|.+|+|||||+++|++..... ....+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-----------------------------~~~~t 58 (201)
T 2ew1_A 8 HHHSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP-----------------------------GQGAT 58 (201)
T ss_dssp --------------CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCT-----------------------------TCCCC
T ss_pred ccccccccCCCCccccccceEEEEECcCCCCHHHHHHHHHhCCCCC-----------------------------CCCCc
Confidence 3457888888888777888999999999999999999998432100 01112
Q ss_pred cceEEEEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCC
Q 010071 328 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVD 406 (519)
Q Consensus 328 ~GiT~~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~p 406 (519)
.+.........+......+.||||||+++|...+..+++.+|++|+|+|++... .+..+ ..++..+.... ...
T Consensus 59 ~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~---s~~~~---~~~~~~i~~~~~~~~ 132 (201)
T 2ew1_A 59 IGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---SFRCL---PEWLREIEQYASNKV 132 (201)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHH---HHHTH---HHHHHHHHHHSCTTC
T ss_pred cceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH---HHHHH---HHHHHHHHHhcCCCC
Confidence 233333333344444568999999999999999999999999999999998752 22222 22222222211 234
Q ss_pred cEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 407 piIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+|||+||+|+........ +++..+.+..+ ++++++||++|.||.++|..+
T Consensus 133 piilv~NK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 133 ITVLVGNKIDLAERREVSQ----QRAEEFSEAQD-----MYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEEEEECGGGGGGCSSCH----HHHHHHHHHHT-----CCEEECCTTTCTTHHHHHHHH
T ss_pred CEEEEEECCCCccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 5999999999974322111 22233333444 478999999999999998754
No 17
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.84 E-value=1.3e-20 Score=170.33 Aligned_cols=161 Identities=18% Similarity=0.119 Sum_probs=105.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
|+.++|+|+|.+|+|||||+++|++..... ......+... .....+....
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~ 50 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVE-----------------------------KYDPTIEDSY-RKQVEVDCQQ 50 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCC-----------------------------SCCCCSEEEE-EEEEESSSCE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCCccceE-EEEEEECCEE
Confidence 467899999999999999999998431100 0011112111 1223345556
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||++++...+..++..+|++|+|+|++... +++.+..+...+.......+.| +++|+||+|+......
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~ 126 (167)
T 1c1y_A 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS---TFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVV 126 (167)
T ss_dssp EEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCS
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccC
Confidence 78999999999999998889999999999999998752 2222222222222222222444 9999999999753222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+++..+.+.++ .++++++||++|.|+.++++.+
T Consensus 127 ~----~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 127 G----KEQGQNLARQWC----NCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp C----HHHHHHHHHHTT----SCEEEECBTTTTBSHHHHHHHH
T ss_pred C----HHHHHHHHHHcc----CCcEEEecCCCCCCHHHHHHHH
Confidence 1 223333444432 3578999999999999998643
No 18
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.84 E-value=8.6e-21 Score=170.95 Aligned_cols=160 Identities=16% Similarity=0.077 Sum_probs=104.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
|+.++|+|+|++|+|||||+++|++..... ......+.. ......+....
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~-~~~~~~~~~~~ 50 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIE-----------------------------KYDPTIEDF-YRKEIEVDSSP 50 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCS-----------------------------CCCTTCCEE-EEEEEEETTEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcc-----------------------------cCCCCccee-EEEEEEECCEE
Confidence 467899999999999999999998532110 000111111 12223344445
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||++++...+..++..+|++++|+|+.... .+..+..+..++.......+.| +++|+||+|+......
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~ 126 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ---SFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREV 126 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCS
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccC
Confidence 67999999999999998888999999999999999752 2222222222222222223444 9999999998743221
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+....+.+..+ ++++++||++|.|+.++++.+
T Consensus 127 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 127 S----SSEGRALAEEWG-----CPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp C----HHHHHHHHHHHT-----SCEEEECTTCHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHhC-----CCEEEecCCCCcCHHHHHHHH
Confidence 1 122333444444 368999999999999998754
No 19
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.84 E-value=1.5e-20 Score=169.60 Aligned_cols=158 Identities=14% Similarity=0.102 Sum_probs=102.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
|+.++|+|+|.+|+|||||+++|++..... ......+... .....+....
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~ 51 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVE-----------------------------DYEPTKADSY-RKKVVLDGEE 51 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------CCCTTCCEEE-EEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCC-----------------------------CCCCCcceEE-EEEEEECCEE
Confidence 467899999999999999999998532100 0001111211 1122344445
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--CCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++++...+..++..+|++|+|+|++... . +.....++..+..... ..|+++|+||+|+....
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 125 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---S---FAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH---H---HHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCCcEEEEEECccccccC
Confidence 68999999999999999999999999999999999652 2 2222222222332221 23499999999997532
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.... +++..+++..+ ++++++||++|.|+.++|+.+
T Consensus 126 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 126 QVSV----EEAKNRADQWN-----VNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp CSCH----HHHHHHHHHHT-----CEEEECCTTTCTTHHHHHHHH
T ss_pred ccCH----HHHHHHHHHcC-----CeEEEeCCCCCCCHHHHHHHH
Confidence 2222 23334444444 478999999999999998744
No 20
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.84 E-value=8.2e-21 Score=200.13 Aligned_cols=178 Identities=26% Similarity=0.305 Sum_probs=122.8
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee---
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--- 339 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~--- 339 (519)
.++.++|+++|++|+|||||+++|++........ +...............+++.......+
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG----------------YAETNIGVCESCKKPEAYVTEPSCKSCGSD 68 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE----------------EEEEEEEECTTSCTTTTEESSSCCGGGTCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccC----------------ccccceeeccccccccceeccccccccccc
Confidence 4567899999999999999999998532211000 000000000000001111111000000
Q ss_pred --cCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010071 340 --DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 340 --~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
......+.|||||||++|...+..++..+|++|||+|+..+. ...++.+++.++..++.+|+|+|+||+|+
T Consensus 69 ~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~-------~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 69 DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF-------PQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp SCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCS-------SCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred ccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCC-------CcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 112268999999999999999999999999999999999872 15788899999998888779999999999
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.. .+......+++..+++..+. ..++++++||++|+||.++++.+.
T Consensus 142 ~~--~~~~~~~~~~i~~~l~~~~~--~~~~ii~vSA~~g~gi~~L~~~l~ 187 (403)
T 3sjy_A 142 VS--KEEALSQYRQIKQFTKGTWA--ENVPIIPVSALHKINIDSLIEGIE 187 (403)
T ss_dssp SC--HHHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHHHHHHHH
T ss_pred cc--hHHHHHHHHHHHHHHHhhCC--CCCEEEEEECCCCcChHHHHHHHH
Confidence 84 44455566677777766554 356899999999999999987653
No 21
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=174.92 Aligned_cols=172 Identities=16% Similarity=0.157 Sum_probs=111.7
Q ss_pred CcccccCCCCcCCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccc
Q 010071 250 KPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG 329 (519)
Q Consensus 250 ~~e~~~~~~~~~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~G 329 (519)
.++.|++.....+..+.++|+|+|.+|+|||||+++|++..... ......+
T Consensus 9 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-----------------------------~~~~t~~ 59 (193)
T 2oil_A 9 HHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSH-----------------------------DSRTTIG 59 (193)
T ss_dssp -----------CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCSS
T ss_pred ccccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccc
Confidence 45666676677777788999999999999999999998532211 0112234
Q ss_pred eEEEEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCc
Q 010071 330 ITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQ 407 (519)
Q Consensus 330 iT~~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~pp 407 (519)
.+.......+......+.||||||++++...+..++..+|++|+|+|++.... +..... ++..+... ...|
T Consensus 60 ~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s------~~~~~~-~l~~i~~~~~~~~p 132 (193)
T 2oil_A 60 VEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT------YAVVER-WLKELYDHAEATIV 132 (193)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHH------HHTHHH-HHHHHHTTSCTTCE
T ss_pred eeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHH------HHHHHH-HHHHHHHhcCCCCe
Confidence 44444445555666789999999999999999999999999999999987521 112222 22222222 2335
Q ss_pred EEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 408 iIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|||+||+|+........ +.+..+++..+ +.++++||++|.||.++++.+
T Consensus 133 iilv~nK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 133 VMLVGNKSDLSQAREVPT----EEARMFAENNG-----LLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp EEEEEECGGGGGGCCSCH----HHHHHHHHHTT-----CEEEEECTTTCTTHHHHHHHH
T ss_pred EEEEEECCCcccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 999999999975322222 23334444444 478999999999999998754
No 22
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=3.2e-21 Score=205.30 Aligned_cols=209 Identities=17% Similarity=0.192 Sum_probs=139.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|++|||||||+|+|++....+ ....+|+|.+.....+...+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~~ 223 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTYNQQ 223 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------EC---------CCEEEEETTE
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceeeeeEEEEEECCe
Confidence 46899999999999999999999543211 112345666555555666778
Q ss_pred EEEEEeCCCCCc----------chhh-hhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEe
Q 010071 345 HVVVLDSPGHKD----------FVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (519)
Q Consensus 345 ~l~LiDTPG~~~----------f~~~-~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvN 413 (519)
.+.||||||+.+ |... ...++..+|++|+|+|++.+. ..+...++..+...+.+ +|+|+|
T Consensus 224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~--------s~~~~~~~~~~~~~~~~-iiiv~N 294 (436)
T 2hjg_A 224 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI--------IEQDKRIAGYAHEAGKA-VVIVVN 294 (436)
T ss_dssp EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC--------CHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCC--------cHHHHHHHHHHHHcCCc-EEEEEE
Confidence 899999999843 3322 235778899999999999873 23445566666666766 999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhccccC-
Q 010071 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSLYLC- 492 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~~~~- 492 (519)
|+|+........+++.+.+...+.... .++++++||++|.||.++|+.+......+..++++..+.+.+......
T Consensus 295 K~Dl~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~ 370 (436)
T 2hjg_A 295 KWDAVDKDESTMKEFEENIRDHFQFLD----YAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMN 370 (436)
T ss_dssp CGGGSCCCTTHHHHHHHHHHHHCGGGT----TSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHS
T ss_pred CccCCCcchHHHHHHHHHHHHhcccCC----CCCEEEEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC
Confidence 999985444334556666666554433 357899999999999999987755444456677888888777665221
Q ss_pred CCeeee----cCCceeEEecccceeeec
Q 010071 493 PYVTFL----NHSTGRCLPVANWRLELF 516 (519)
Q Consensus 493 ~~~~~~----~~~~g~~~p~~~~~~~l~ 516 (519)
|..... +-...+.....++.+.+|
T Consensus 371 ~pp~~~~~~~~i~y~~q~~~~pp~~~~~ 398 (436)
T 2hjg_A 371 PTPTHNGSRLKIYYATQVSVKPPSFVVF 398 (436)
T ss_dssp CCCEETTEECCEEEEEEEETTTTEEEEE
T ss_pred CCCccCCcceeEEeEecCCCCCCEEEEE
Confidence 222111 123355566777777776
No 23
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=170.81 Aligned_cols=159 Identities=17% Similarity=0.107 Sum_probs=107.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 57 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSG-----------------------------SYITTIGVDFKIRTVEINGEK 57 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC--------------------------------CCTTTBSEEEEEEEEEETTEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------ccCCCceeEEEEEEEEECCEE
Confidence 457899999999999999999998432110 011122333333333444444
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||++.+...+..++..+|++|+|+|++.+. . +.....++..+.......|+|||+||+|+......
T Consensus 58 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 131 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAE---S---FVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVV 131 (181)
T ss_dssp EEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHH---H---HHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCS
T ss_pred EEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhCCCCCEEEEEECCCCchhccc
Confidence 78999999999999999999999999999999999752 1 22333333333333334559999999998753222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. +....+....+ ++++++||++|.||.++++.+
T Consensus 132 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 132 ET----EDAYKFAGQMG-----IQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp CH----HHHHHHHHHHT-----CCEEECBTTTTBSHHHHHHHH
T ss_pred CH----HHHHHHHHHcC-----CeEEEEECCCCCCHHHHHHHH
Confidence 21 22333444444 368999999999999998754
No 24
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.83 E-value=3.6e-20 Score=167.67 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=109.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHE-----------------------------FQESTIGAAFLTQTVCLDDTT 54 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------------TCCCCSSEEEEEEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceEEEEEEEEECCEE
Confidence 467899999999999999999998432100 112234445544455556667
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.||||||++++...+..++..+|++|+|+|++... . +.....++..+.... ...|+++|+||+|+.....
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~ 128 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEE---S---FARAKNWVKELQRQASPNIVIALSGNKADLANKRA 128 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH---H---HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCcEEEEEECccCccccc
Confidence 78999999999999999999999999999999998652 1 222222323333321 2234899999999974322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... +++..+....+ ++++++||++|.|+.++++.+
T Consensus 129 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 129 VDF----QEAQSYADDNS-----LLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp SCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHHHHHHH
T ss_pred cCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 222 23334444444 478999999999999998754
No 25
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.83 E-value=2.2e-20 Score=171.17 Aligned_cols=163 Identities=13% Similarity=0.060 Sum_probs=106.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC-
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~- 341 (519)
.++.++|+|+|.+|+|||||+++|++..... ...++.+.........+..
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 53 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGK-----------------------------QYKQTIGLDFFLRRITLPGN 53 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTH-----------------------------HHHHTTTSSEEEEEEEETTT
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCC-----------------------------CCCCceeEEEEEEEEEeCCC
Confidence 3567999999999999999999998532100 0001122222222222322
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~ 420 (519)
....+.||||||++.|...+..++..+|++|+|+|++... .++.+..+..++..+... ...|++|||+||+|+...
T Consensus 54 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~ 130 (178)
T 2hxs_A 54 LNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQ---SFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM 130 (178)
T ss_dssp EEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred CEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence 2378999999999999999999999999999999998762 222222232333222222 245668999999999743
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..... +.+..+.+..+ ++++++||++|.||.++|+.+
T Consensus 131 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 167 (178)
T 2hxs_A 131 RTIKP----EKHLRFCQENG-----FSSHFVSAKTGDSVFLCFQKV 167 (178)
T ss_dssp CSSCH----HHHHHHHHHHT-----CEEEEECTTTCTTHHHHHHHH
T ss_pred cccCH----HHHHHHHHHcC-----CcEEEEeCCCCCCHHHHHHHH
Confidence 22111 23334444444 478999999999999998744
No 26
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=1.1e-20 Score=197.32 Aligned_cols=146 Identities=19% Similarity=0.261 Sum_probs=124.9
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
+|+++|++++|||||+++|+ .+|+|++.....+.+.+..+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------------------------------------~~giTi~~~~~~~~~~~~~i~ 63 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------------------------------------KKGTSSDITMYNNDKEGRNMV 63 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------------------------------------EEEEESSSEEEEECSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------------------------------------hCCEEEEeeEEEEecCCeEEE
Confidence 89999999999999999997 256777777777888889999
Q ss_pred EEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEe-ecccccccchhHH
Q 010071 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDRFD 426 (519)
Q Consensus 348 LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvN-KiDlv~~~~e~le 426 (519)
|||||||++|...+..+++.+|++|+||| ..+ ...++.+++.++...++|.+|+|+| |+|+ . .+.++
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g--------~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~--~~~~~ 131 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQG--------LDAHTGECIIALDLLGFKHGIIALTRSDST-H--MHAID 131 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC--------CCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C--HHHHH
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC--------CcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C--HHHHH
Confidence 99999999999999999999999999999 766 5678999999999999885589999 9998 3 34455
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEE--ecccc---CCCcccccccc
Q 010071 427 SIKVQLGTFLRSCGFKDASLTWIP--LSALE---NQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~Ip--vSA~t---GegI~el~~~i 466 (519)
.+.+++..+++..++ ..+++++ +||++ |+||.++++.+
T Consensus 132 ~~~~~i~~~l~~~~~--~~~~ii~~~~SA~~~~~g~gi~~L~~~l 174 (370)
T 2elf_A 132 ELKAKLKVITSGTVL--QDWECISLNTNKSAKNPFEGVDELKARI 174 (370)
T ss_dssp HHHHHHHHHTTTSTT--TTCEEEECCCCTTSSSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--CceEEEecccccccCcCCCCHHHHHHHH
Confidence 666778888776655 3468999 99999 99999998754
No 27
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=2e-21 Score=178.14 Aligned_cols=156 Identities=27% Similarity=0.311 Sum_probs=104.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++....... .++++.+.....+...+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 54 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE-------------------------------AGGITQHIGAYQVTVND 54 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS-------------------------------CCSSSTTCCCCEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCC-------------------------------CCceeEeeeEEEEEeCC
Confidence 45689999999999999999999853221100 01111111111233356
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||+++|...+..++..+|++|+|+|++.+. .....+.+..+...+.| +++|+||+|+.....
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~--------~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~- 124 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV--------MPQTVEAINHAKAANVP-IIVAINKMDKPEANP- 124 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC--------CHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCH-
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC--------cHHHHHHHHHHHhCCCC-EEEEEECccCCcCCH-
Confidence 78899999999999999889999999999999998752 23344445555555666 999999999975321
Q ss_pred hHHHHHHHHHHHHHhcCCCC----CCceEEEeccccCCCcccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKD----ASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~----~~i~~IpvSA~tGegI~el~~~i 466 (519)
+.+.. .+...+.-. ..++++++||++|.||.++++.+
T Consensus 125 --~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 125 --DRVMQ----ELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMI 165 (178)
T ss_dssp --HHHHH----HHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHH
T ss_pred --HHHHH----HHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHH
Confidence 12222 222222111 12589999999999999998754
No 28
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=6.4e-21 Score=204.04 Aligned_cols=210 Identities=17% Similarity=0.199 Sum_probs=145.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|+|||||+|+|++...... ....|+|.+.....+...+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~~ 242 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV------------------------------SNVAGTTRDAVDTSFTYNQ 242 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE------------------------------CC------CTTSEEEEETT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcccc------------------------------CCCCCeEEEEEEEEEEECC
Confidence 3568999999999999999999995432211 1123444443333455567
Q ss_pred eEEEEEeCCC----------CCcchhhh-hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEE
Q 010071 344 YHVVVLDSPG----------HKDFVPNM-ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (519)
Q Consensus 344 ~~l~LiDTPG----------~~~f~~~~-~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVv 412 (519)
..++|||||| ++.|.... ..++..+|++|+|+|++.+ +..+..+++.++...+.| +|||+
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~--------~~~~~~~~~~~~~~~~~~-~ilv~ 313 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG--------IIEQDKRIAGYAHEAGKA-VVIVV 313 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCE-EEEEE
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCC--------cCHHHHHHHHHHHHcCCC-EEEEE
Confidence 7999999999 56565543 4578889999999999987 456777888888887766 99999
Q ss_pred eecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcccc-
Q 010071 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSLYL- 491 (519)
Q Consensus 413 NKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~~~- 491 (519)
||+|+........+++.+.+...+...++ ++++++||++|.||.++|+.+......+..++++..+.+.+.....
T Consensus 314 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~ 389 (456)
T 4dcu_A 314 NKWDAVDKDESTMKEFEENIRDHFQFLDY----APILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAM 389 (456)
T ss_dssp ECGGGSCCCSSHHHHHHHHHHHHCGGGTT----SCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred EChhcCCCchHHHHHHHHHHHHhcccCCC----CCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 99999865555566777777776655443 5789999999999999998876555555667788888777654322
Q ss_pred CCCeeeec----CCceeEEecccceeeec
Q 010071 492 CPYVTFLN----HSTGRCLPVANWRLELF 516 (519)
Q Consensus 492 ~~~~~~~~----~~~g~~~p~~~~~~~l~ 516 (519)
.+...... -...+.....++.+.+|
T Consensus 390 ~~pp~~~~~~~ki~y~~q~~~~pp~~~~~ 418 (456)
T 4dcu_A 390 NPTPTHNGSRLKIYYATQVSVKPPSFVVF 418 (456)
T ss_dssp SCCCEETTEECCEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCceeeEEEEecCCCCCCEEEEE
Confidence 11111111 22345566777777766
No 29
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=5.9e-20 Score=166.21 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=108.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+.++|+|+|.+|+|||||+++|++..... ...+..+.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAE-----------------------------NKEPTIGAAFLTQRVTINEHTV 52 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------------TCCCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEE
Confidence 56899999999999999999998432110 1122344444444455555567
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccch
Q 010071 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e 423 (519)
.+.||||||++.+...+..++..+|++|+|+|++...+ +.....++..+.... ...|+++|+||+|+......
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 126 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS------FIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGE 126 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH------HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCC
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHH------HHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccc
Confidence 89999999999999999999999999999999997521 222222222333322 23359999999999753110
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+ +...+....+.+..+ ++++++||++|.|+.++|+.+
T Consensus 127 ~-~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1ek0_A 127 R-KVAREEGEKLAEEKG-----LLFFETSAKTGENVNDVFLGI 163 (170)
T ss_dssp C-CSCHHHHHHHHHHHT-----CEEEECCTTTCTTHHHHHHHH
T ss_pred c-CCCHHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 1 111223333444444 478999999999999998754
No 30
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=170.81 Aligned_cols=157 Identities=17% Similarity=0.106 Sum_probs=96.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|.+|+|||||+++|++..... .....|.+.......+....
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 51 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERD------------------------------LHEQLGEDVYERTLTVDGED 51 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----------------------------------CCCSSSSEEEEEEEETTEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcc------------------------------ccCccccceeEEEEEECCEE
Confidence 356899999999999999999998432211 01113333333334455555
Q ss_pred eEEEEEeCCCCCc--chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeecccc
Q 010071 344 YHVVVLDSPGHKD--FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAV 418 (519)
Q Consensus 344 ~~l~LiDTPG~~~--f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv 418 (519)
..+.||||||++. +......+++.+|++|+|+|++... + +.....+...+... .+.| +|+|+||+|+.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~ 124 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRG---S---FESASELRIQLRRTHQADHVP-IILVGNKADLA 124 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHH---H---HHHHHHHHHHHHHCC----CC-EEEEEECTTCT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhhccCCCC-EEEEEEChhhc
Confidence 6899999999987 4555566778899999999998652 2 22222222222221 2444 99999999997
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.......+ +...+....+ ++++++||++|.||.++|+.+
T Consensus 125 ~~~~v~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~~l 163 (175)
T 2nzj_A 125 RCREVSVE----EGRACAVVFD-----CKFIETSATLQHNVAELFEGV 163 (175)
T ss_dssp TTCCSCHH----HHHHHHHHHT-----SEEEECBTTTTBSHHHHHHHH
T ss_pred cccccCHH----HHHHHHHHcC-----CeEEEEecCCCCCHHHHHHHH
Confidence 43222222 2233333344 478999999999999998754
No 31
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.83 E-value=5.3e-20 Score=168.22 Aligned_cols=160 Identities=15% Similarity=0.170 Sum_probs=106.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|.+|+|||||+++|++..... ......++........+...
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDN-----------------------------TYQATIGIDFLSKTMYLEDR 61 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCCSEEEEEEEEEETTE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCceeeEEEEEEEEECCe
Confidence 4567999999999999999999998432110 01112233333333344444
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeeccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~ 421 (519)
...+.||||||++++...+..++..+|++|+|+|++... .+. ....++..+.... ...|+|+|+||+|+....
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN---SFH---QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCcEEEEEECCcccccC
Confidence 568999999999999999889999999999999998652 222 2222222222221 233499999999997532
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
....+ +...+++..+ ++++++||++|.|+.++++.+
T Consensus 136 ~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 136 QVSTE----EGERKAKELN-----VMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp CSCHH----HHHHHHHHHT-----CEEEEEBTTTTBSHHHHHHHH
T ss_pred cCCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 22222 2233333444 478999999999999998754
No 32
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.83 E-value=2e-20 Score=172.52 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=106.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++.... .......+.+. .....+....
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-----------------------------~~~~~t~~~~~-~~~~~~~~~~ 53 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFV-----------------------------DSYDPTIENTF-TKLITVNGQE 53 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCC-----------------------------SCCCTTCCEEE-EEEEEETTEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCC-----------------------------CCCCCCccccE-EEEEEECCEE
Confidence 45789999999999999999999843210 01111223333 2333344455
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||+++|...+..++..+|++|+|+|++... .++.+..+..++...+...+.| +|||+||+|+......
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~ 129 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK---SFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVI 129 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCS
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhccee
Confidence 78899999999999888888999999999999999752 2222323333333333333445 9999999998643222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+++..+.+..+ ++++++||++|.|+.++|..+
T Consensus 130 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~~l 163 (181)
T 3t5g_A 130 S----YEEGKALAESWN-----AAFLESSAKENQTAVDVFRRI 163 (181)
T ss_dssp C----HHHHHHHHHHTT-----CEEEECCTTSHHHHHHHHHHH
T ss_pred c----HHHHHHHHHHhC-----CcEEEEecCCCCCHHHHHHHH
Confidence 2 233444555554 378999999999999998754
No 33
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.83 E-value=4.7e-20 Score=172.42 Aligned_cols=171 Identities=18% Similarity=0.128 Sum_probs=112.5
Q ss_pred cccccCCCCcCCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccce
Q 010071 251 PEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI 330 (519)
Q Consensus 251 ~e~~~~~~~~~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~Gi 330 (519)
++.|............++|+|+|.+|+|||||+++|++..... ......+.
T Consensus 6 ~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~ 56 (191)
T 2a5j_A 6 HHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGV 56 (191)
T ss_dssp ----CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------------------CCS
T ss_pred cccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------CCCCcccc
Confidence 4456666666777888999999999999999999998532211 00111233
Q ss_pred EEEEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcE
Q 010071 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQL 408 (519)
Q Consensus 331 T~~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppi 408 (519)
+.......+......+.||||||+++|...+..++..+|++|+|+|++... . +.....+ +..+... ...|+
T Consensus 57 ~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s---~~~~~~~-l~~i~~~~~~~~pi 129 (191)
T 2a5j_A 57 EFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---T---FNHLTSW-LEDARQHSSSNMVI 129 (191)
T ss_dssp SEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHH---H---HHTHHHH-HHHHHHHSCTTCEE
T ss_pred eeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHH---H---HHHHHHH-HHHHHHhcCCCCCE
Confidence 333333444445578999999999999988889999999999999998752 2 2222222 2222222 23359
Q ss_pred EEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 409 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 409 IVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|||+||+|+....... .+++..+.+..+ +.++++||++|.||.++|+.+
T Consensus 130 ilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 178 (191)
T 2a5j_A 130 MLIGNKSDLESRRDVK----REEGEAFAREHG-----LIFMETSAKTACNVEEAFINT 178 (191)
T ss_dssp EEEEECTTCGGGCCSC----HHHHHHHHHHHT-----CEEEEECTTTCTTHHHHHHHH
T ss_pred EEEEECcccCCccccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 9999999997422211 223334444444 478999999999999998754
No 34
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.3e-20 Score=171.37 Aligned_cols=160 Identities=16% Similarity=0.110 Sum_probs=98.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++..... ....+..+.+.......+....
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~----------------------------~~~~~t~~~~~~~~~~~~~~~~ 59 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA----------------------------GTFISTVGIDFRNKVLDVDGVK 59 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC----------------------------CCCCCCCSCEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC----------------------------CCcCCceeeEEEEEEEEECCEE
Confidence 467899999999999999999998532210 0111223333333333444455
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.||||||++.+...+..++..+|++|+|+|++... .+. ....++..+.... ...|++||+||+|+.....
T Consensus 60 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 133 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKA---SFD---NIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV 133 (180)
T ss_dssp EEEEEEECCCC--------CCGGGCSEEEEEEETTCHH---HHH---THHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC
T ss_pred EEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCCcEEEEEECcccCcccc
Confidence 68999999999999999999999999999999999752 122 1222222222211 2335999999999985322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... +.+..+.+..+ ++++++||++|.||.++++.+
T Consensus 134 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 168 (180)
T 2g6b_A 134 VKR----EDGEKLAKEYG-----LPFMETSAKTGLNVDLAFTAI 168 (180)
T ss_dssp SCH----HHHHHHHHHHT-----CCEEECCTTTCTTHHHHHHHH
T ss_pred cCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 122 22333444444 368999999999999998754
No 35
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=173.47 Aligned_cols=162 Identities=19% Similarity=0.136 Sum_probs=106.8
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec
Q 010071 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
....+.++|+|+|.+|+|||||+++|++...... ....+.+. ....+.
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------------------~~~~t~~~----~~~~~~ 63 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ----------------------------NILPTIGF----SIEKFK 63 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCS----------------------------SCCCCSSE----EEEEEE
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCC----------------------------CcCCccce----eEEEEE
Confidence 3456679999999999999999999985321010 01111222 222334
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh----CCCcEEEEEeecc
Q 010071 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMD 416 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~~ppiIVVvNKiD 416 (519)
..+..+.||||||++++...+..++..+|++|+|+|++... .+.....++..++... ...|+|||+||+|
T Consensus 64 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 137 (190)
T 2h57_A 64 SSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRL------RMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137 (190)
T ss_dssp CSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHH------HHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTT
T ss_pred ECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHH------HHHHHHHHHHHHHhChhhccCCCeEEEEEeCcC
Confidence 45689999999999999999999999999999999998651 1333334444444432 2234999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+.. ....+++. ..+....+....+.++++||++|.||.++++.+
T Consensus 138 l~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 138 LRD--AVTSVKVS----QLLCLENIKDKPWHICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp STT--CCCHHHHH----HHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred ccc--CCCHHHHH----HHhChhhccCCceEEEEccCCCCcCHHHHHHHH
Confidence 974 22223333 333222233345789999999999999998754
No 36
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.82 E-value=8.2e-20 Score=165.55 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=109.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|.+|+|||||+++|++.... ....+..+.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFD-----------------------------PNINPTIGASFMTKTVQYQNEL 54 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCC-----------------------------TTCCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC-----------------------------CCCCCceeEEEEEEEEEECCeE
Confidence 45789999999999999999999853210 0112234555555555566666
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++++...+..++..+|++|+|+|++...+ +... ..++..+... ...|+++|+||+|+....
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET------FSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHH------HHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHH------HHHH-HHHHHHHHHhCCCCCcEEEEEECCcccccc
Confidence 889999999999999988899999999999999987521 2122 2233333333 234589999999997532
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .+....+.+..+ ++++++||++|.|+.++++.+
T Consensus 128 ~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 128 EVM----ERDAKDYADSIH-----AIFVETSAKNAININELFIEI 163 (170)
T ss_dssp CSC----HHHHHHHHHHTT-----CEEEECBTTTTBSHHHHHHHH
T ss_pred ccC----HHHHHHHHHHcC-----CEEEEEeCCCCcCHHHHHHHH
Confidence 211 222333444443 478999999999999998744
No 37
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.82 E-value=4.5e-20 Score=169.91 Aligned_cols=161 Identities=13% Similarity=0.114 Sum_probs=105.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|.+|+|||||+++|++..... ......+... .....+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~ 64 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE-----------------------------DYEPTKADSY-RKKVVLDGE 64 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCTTCCEEE-EEEEEETTE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCC-----------------------------cCCCccceEE-EEEEEECCE
Confidence 4567899999999999999999998532100 0001111111 112233444
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
...+.||||||++++...+..++..+|++|+|+|+.... .+..+..+..++.......+.| +|||+||+|+.....
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~ 140 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQ 140 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGGCC
T ss_pred EEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCc
Confidence 568999999999999999999999999999999999652 2222222222222222222444 999999999975322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. .+++..+++..+ ++++++||++|.||.++|+.+
T Consensus 141 ~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 141 VS----VEEAKNRAEQWN-----VNYVETSAKTRANVDKVFFDL 175 (187)
T ss_dssp SC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHHHHHHH
T ss_pred cC----HHHHHHHHHHcC-----CeEEEeCCCCCCCHHHHHHHH
Confidence 22 233344444544 478999999999999998754
No 38
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=177.25 Aligned_cols=174 Identities=17% Similarity=0.139 Sum_probs=104.2
Q ss_pred CCcccccCCCCcCCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhccccccccccc
Q 010071 249 YKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER 328 (519)
Q Consensus 249 ~~~e~~~~~~~~~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~ 328 (519)
-.++.|+.+....+..+.++|+|+|.+|+|||||+++|++..... ......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-----------------------------~~~~t~ 58 (200)
T 2o52_A 8 HHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQ-----------------------------DSNHTI 58 (200)
T ss_dssp --------------CCEEEEEEEEESTTSSHHHHHHHHHC----------------------------------------
T ss_pred cccccccccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCc-----------------------------cCCCcc
Confidence 346777777777777788999999999999999999998432110 001112
Q ss_pred ceEEEEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCc
Q 010071 329 GITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQ 407 (519)
Q Consensus 329 GiT~~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~pp 407 (519)
+.+.......+......+.||||||+++|...+..++..+|++|+|+|++... .+ .....++..+.... ...|
T Consensus 59 ~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p 132 (200)
T 2o52_A 59 GVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE---TY---NSLAAWLTDARTLASPNIV 132 (200)
T ss_dssp -CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHH---HH---HTHHHHHHHHHHHTCTTCE
T ss_pred cceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHH---HH---HHHHHHHHHHHHhcCCCCc
Confidence 22222333334444478999999999988888888999999999999999752 22 22222222222211 2234
Q ss_pred EEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 408 iIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|||+||+|+........ .+...+.+..+ ++++++||++|.||.++|..+
T Consensus 133 iilv~nK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 133 VILCGNKKDLDPEREVTF----LEASRFAQENE-----LMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEEEECGGGGGGCCSCH----HHHHHHHHHTT-----CEEEEECTTTCTTHHHHHHHH
T ss_pred EEEEEECCCcccccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 999999999974322222 22333444444 478999999999999998754
No 39
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.82 E-value=6.2e-20 Score=170.58 Aligned_cols=106 Identities=18% Similarity=0.116 Sum_probs=76.3
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||++.|...+..++..+|++|||+|++.+.+ +.....++..+....+ .|+|+|+||+| ......
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s------~~~~~~~~~~i~~~~~-~piilv~NK~D-~~~~~~ 164 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT------LDRAKTWVNQLKISSN-YIIILVANKID-KNKFQV 164 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHH------HHHHHHHHHHHHHHSC-CEEEEEEECTT-CC-CCS
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH------HHHHHHHHHHHHhhCC-CcEEEEEECCC-cccccC
Confidence 789999999999999999999999999999999997621 2222333333333344 55999999999 322222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+++..+++..+ ++++++||++|.||.++++.+
T Consensus 165 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~~l 198 (208)
T 3clv_A 165 D----ILEVQKYAQDNN-----LLFIQTSAKTGTNIKNIFYML 198 (208)
T ss_dssp C----HHHHHHHHHHTT-----CEEEEECTTTCTTHHHHHHHH
T ss_pred C----HHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHHHH
Confidence 2 233444555544 488999999999999998754
No 40
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.82 E-value=5e-20 Score=170.09 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=108.3
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
...+.++|+|+|.+|+|||||+++|++..... ......+... .....+..
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~ 63 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVD-----------------------------DYDPTIEDSY-LKHTEIDN 63 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------CCCTTCCEEE-EEEEEETT
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCcccee-EEEEEeCC
Confidence 35678999999999999999999998431100 0111122222 23333444
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
....+.||||||++.|...+..++..+|++|+|+|++... .+..+..+...+.......+.| +|+|+||+|+....
T Consensus 64 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 139 (183)
T 3kkq_A 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA---SFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLR 139 (183)
T ss_dssp EEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTC
T ss_pred cEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhcc
Confidence 4566788999999999999889999999999999999762 2333333333333333333445 99999999987422
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccc-cCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~-tGegI~el~~~i 466 (519)
... .+++..+.+.++ ++++++||+ +|.||.++|+.+
T Consensus 140 ~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~~v~~l~~~l 176 (183)
T 3kkq_A 140 KVT----RDQGKEMATKYN-----IPYIETSAKDPPLNVDKTFHDL 176 (183)
T ss_dssp CSC----HHHHHHHHHHHT-----CCEEEEBCSSSCBSHHHHHHHH
T ss_pred CcC----HHHHHHHHHHhC-----CeEEEeccCCCCCCHHHHHHHH
Confidence 222 223344444444 468999999 999999998754
No 41
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.82 E-value=7.3e-20 Score=165.58 Aligned_cols=158 Identities=14% Similarity=0.160 Sum_probs=105.1
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+.++|+|+|.+|+|||||+++|++..... ......+.........+.....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 54 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-----------------------------DYKKTIGVDFLERQIQVNDEDV 54 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-----------------------------CSSCCCSSSEEEEEEEETTEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCceEEEEEEEEEEECCEEE
Confidence 46899999999999999999998532100 0111122222223333444456
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010071 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.+.||||||++.+...+..++..+|++|+|+|++... .++ ....++..+.......|+++|+||+|+.......
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~ 128 (168)
T 1z2a_A 55 RLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE---SFE---AISSWREKVVAEVGDIPTALVQNKIDLLDDSCIK 128 (168)
T ss_dssp EEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHH---HHH---THHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSC
T ss_pred EEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhCCCCCEEEEEECcccCcccccC
Confidence 8999999999999888888999999999999998752 122 2222222222222334599999999997532221
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. +++..+++..+ ++++++||++|.|+.++++.+
T Consensus 129 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 129 N----EEAEGLAKRLK-----LRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp H----HHHHHHHHHHT-----CEEEECBTTTTBSSHHHHHHH
T ss_pred H----HHHHHHHHHcC-----CeEEEEecCCCCCHHHHHHHH
Confidence 2 23334444444 478999999999999998744
No 42
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=7.8e-20 Score=171.30 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=111.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++.... .......+.+.......+....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD-----------------------------HNISPTIGASFMTKTVPCGNEL 71 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC-----------------------------TTCCCCSSEEEEEEEEECSSSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC-----------------------------CCcCCCcceeEEEEEEEeCCEE
Confidence 46799999999999999999999843210 0122334556555555666677
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++++...+..++..+|++|+|+|++... . +... ..++..+... ...|+|||+||+|+....
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~---s---~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 144 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQD---S---FYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIR 144 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTH---H---HHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHH---H---HHHH-HHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 89999999999999999999999999999999998762 1 2222 2223333332 134599999999997422
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .+++..+++..+ ++++++||++|.||.++++.+
T Consensus 145 ~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 145 EVP----LKDAKEYAESIG-----AIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp CSC----HHHHHHHHHTTT-----CEEEECBTTTTBSHHHHHHHH
T ss_pred ccC----HHHHHHHHHHcC-----CEEEEEeCCCCcCHHHHHHHH
Confidence 222 233444554444 478999999999999998754
No 43
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.82 E-value=7.2e-20 Score=168.20 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=107.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|.+|+|||||+++|++..... ......+.+.......+...
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 59 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVE-----------------------------FQESTIGAAFFSQTLAVNDA 59 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTT-----------------------------TSCCCSCCSEEEEEEEETTE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------cCCCCceeEEEEEEEEECCE
Confidence 4567899999999999999999998432110 01112233333333444555
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--CCcEEEEEeecccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--~ppiIVVvNKiDlv~~ 420 (519)
...+.||||||++++...+..++..+|++|+|+|++.... +.... .++..+.... ..|++||+||+|+...
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS------FERAK-KWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH------HHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH------HHHHH-HHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 6789999999999999999999999999999999986521 22222 2333333321 3359999999999743
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.... .+++..+++..+ ++++++||++|.||.++++.+
T Consensus 133 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 133 RKVT----AEDAQTYAQENG-----LFFMETSAKTATNVKEIFYEI 169 (181)
T ss_dssp CCSC----HHHHHHHHHHTT-----CEEEECCSSSCTTHHHHHHHH
T ss_pred ccCC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHHHHHH
Confidence 2222 233344444444 478999999999999998754
No 44
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.82 E-value=2.3e-20 Score=169.08 Aligned_cols=154 Identities=18% Similarity=0.066 Sum_probs=88.6
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.+||+|+|.+|+|||||+++|++..... .....+.+.. ....+......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~-~~~~~~~~~~~ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP------------------------------EAEAAGHTYD-RSIVVDGEEAS 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------------------------CEEE-EEEEETTEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC------------------------------CCCccccceE-EEEEECCEEEE
Confidence 4789999999999999999998432111 0111233332 22345556678
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeecccccccc
Q 010071 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~~~~ 422 (519)
+.+|||||++.+...+..++..+|++|+|+|++... + +.....++..+... .+.| +|+|+||+|+.....
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~ 123 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG---S---FEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSRE 123 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHH---H---HHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCC
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccc
Confidence 999999999999988888999999999999999652 2 22233333333322 2444 999999999975322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... +....+....+ ++++++||++|+|+.++|+.+
T Consensus 124 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 124 VSV----DEGRACAVVFD-----CKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp SCH----HHHHHHHHHTT-----CEEEECBGGGTBSHHHHHHHH
T ss_pred cCH----HHHHHHHHHhC-----CcEEEeccCCCCCHHHHHHHH
Confidence 221 22233333444 478999999999999998754
No 45
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.82 E-value=4.2e-20 Score=167.91 Aligned_cols=157 Identities=21% Similarity=0.130 Sum_probs=106.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++.... ...++.+.+. ..+....
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------------------------~~~~t~~~~~----~~~~~~~ 50 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV------------------------------TTIPTIGFNV----ETVTYKN 50 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC------------------------------CCCCCSSEEE----EEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC------------------------------CcCCcCccce----EEEEECC
Confidence 35689999999999999999999843210 0111122221 2233357
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++++...+..++..+|++|+|+|++... .+.....++..++... ...|+++|+||+|+...
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~- 123 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD------RIGISKSELVAMLEEEELRKAILVVFANKQDMEQA- 123 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCT------THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC-
Confidence 89999999999999999999999999999999998762 1333444444444331 23459999999999743
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+++.+.+ ....+....++++++||++|.|+.++++.+
T Consensus 124 -~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (171)
T 1upt_A 124 -MTSSEMANSL----GLPALKDRKWQIFKTSATKGTGLDEAMEWL 163 (171)
T ss_dssp -CCHHHHHHHH----TGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred -CCHHHHHHHh----CchhccCCceEEEECcCCCCcCHHHHHHHH
Confidence 2222333222 221222345689999999999999998744
No 46
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.82 E-value=1e-19 Score=165.14 Aligned_cols=160 Identities=18% Similarity=0.130 Sum_probs=99.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 54 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFND-----------------------------KHITTLGASFLTKKLNIGGKR 54 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCS-----------------------------SCCCCCSCEEEEEEEESSSCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCc-----------------------------CCCCccceEEEEEEEEECCEE
Confidence 456899999999999999999998532100 011122333333344445556
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||++++...+..++..+|++|+|+|++... .+..+..+...+... ...+. |+++|+||+|+......
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~~-piilv~nK~Dl~~~~~~ 129 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDED---SFQKVKNWVKELRKM-LGNEI-CLCIVGNKIDLEKERHV 129 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHH-HGGGS-EEEEEEECGGGGGGCCS
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHh-cCCCC-eEEEEEECccccccccc
Confidence 78999999999999998888999999999999998752 222121111111111 11233 49999999999753222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+++..+.+..+ ++++++||++|.|+.++++.+
T Consensus 130 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 130 S----IQEAESYAESVG-----AKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp C----HHHHHHHHHHTT-----CEEEEEBTTTTBSHHHHHHHH
T ss_pred C----HHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHHHH
Confidence 2 223344444444 478999999999999998754
No 47
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.82 E-value=6e-20 Score=172.48 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=106.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|.+|+|||||+++|++..... ....+.+... .....+...
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~ 60 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE-----------------------------DYEPTKADSY-RKKVVLDGE 60 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------------TCCTTCCEEE-EEEEEETTE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCccceEE-EEEEEECCE
Confidence 4567999999999999999999998532100 0011112222 122234444
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh---CCCcEEEEEeeccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~~ppiIVVvNKiDlv~ 419 (519)
...+.||||||++++...+..++..+|++|+|+|++... . +.....++..+.... +.| +|||+||+|+..
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 133 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---S---FAATADFREQILRVKEDENVP-FLLVGNKSDLED 133 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---H---HHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGG
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccc
Confidence 568999999999999999999999999999999999652 2 222222222333322 444 999999999975
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
......+ ++..+++..+ ++++++||++|.||.++|..+
T Consensus 134 ~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~~l 171 (206)
T 2bov_A 134 KRQVSVE----EAKNRAEQWN-----VNYVETSAKTRANVDKVFFDL 171 (206)
T ss_dssp GCCSCHH----HHHHHHHHHT-----CEEEEECTTTCTTHHHHHHHH
T ss_pred cccccHH----HHHHHHHHhC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 3222222 3334444444 478999999999999998755
No 48
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.82 E-value=4e-20 Score=170.78 Aligned_cols=158 Identities=18% Similarity=0.127 Sum_probs=100.3
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+.++|+|+|.+|||||||+++|++....... ....+ +.......+.....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~t~~-~~~~~~~~~~~~~~ 52 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY-----------------------------DPTIE-DSYRKQVVIDGETC 52 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC-----------------------------CTTCC-EEEEEEEEETTEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------------------CCCch-heEEEEEEECCcEE
Confidence 5689999999999999999999853211000 00011 11122233444456
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010071 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.+.||||||++.+...+..++..+|++|+|+|+.... .+..+..+...+..+....+.| +|+|+||+|+... ..
T Consensus 53 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~--~~ 126 (189)
T 4dsu_A 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK---SFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSR--TV 126 (189)
T ss_dssp EEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSC--SS
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCccc--cc
Confidence 7889999999999999999999999999999999752 2222222222222222222444 9999999999732 21
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+.+..+.+..+ ++++++||++|.|+.++++.+
T Consensus 127 ~---~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 127 D---TKQAQDLARSYG-----IPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp C---HHHHHHHHHHHT-----CCEEECCTTTCTTHHHHHHHH
T ss_pred C---HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 1 122333444444 368999999999999998754
No 49
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.82 E-value=7.7e-20 Score=169.15 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=105.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEE-EEEEeecC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDS 341 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~-~~~~~~~~ 341 (519)
....++|+|+|.+|+|||||+++|++..... ......+.... .....+..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 58 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNS-----------------------------KFITTVGIDFREKRVVYRAN 58 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCSEEEEEEEEEECTT
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------CcccccceeeeeEEEEEecC
Confidence 3457899999999999999999998532100 01111222222 22222332
Q ss_pred C---------CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEE
Q 010071 342 K---------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIV 410 (519)
Q Consensus 342 ~---------~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIV 410 (519)
. ...+.||||||++.+...+..++..+|++|+|+|++.... +.....++..+.... ...|+||
T Consensus 59 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~~piil 132 (195)
T 3bc1_A 59 GPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQS------FLNVRNWISQLQMHAYSENPDIVL 132 (195)
T ss_dssp SCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHH------HHTHHHHHHHHHHHSSSSSCCEEE
T ss_pred CcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCCCEEE
Confidence 2 4689999999999999999999999999999999987521 222222222222222 2345999
Q ss_pred EEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 411 VvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+||+|+....... .+.+..+....+ ++++++||++|.||.++++.+
T Consensus 133 v~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~~l 179 (195)
T 3bc1_A 133 CGNKSDLEDQRAVK----EEEARELAEKYG-----IPYFETSAANGTNISHAIEML 179 (195)
T ss_dssp EEECTTCGGGCCSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHHHHHH
T ss_pred EEECcccccccccC----HHHHHHHHHHcC-----CCEEEEECCCCCCHHHHHHHH
Confidence 99999997432221 223334444444 368999999999999998754
No 50
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.82 E-value=8.6e-20 Score=166.82 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=107.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 63 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA-----------------------------DCPHTIGVEFGTRIIEVSGQK 63 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------SCTTSCCCCEEEEEEEETTEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceEEEEEEEEECCeE
Confidence 457899999999999999999998532210 011123334444444455556
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.||||||++++...+..++..+|++|+|+|++...+ +. ....++..+.... ...|+|+|+||+|+.....
T Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 137 (179)
T 1z0f_A 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YN---HLSSWLTDARNLTNPNTVIILIGNKADLEAQRD 137 (179)
T ss_dssp EEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred EEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHH---HH---HHHHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence 789999999999999999999999999999999997622 22 1222222222211 2235999999999974322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. .+++..+++..+ ++++++||++|.||.++|+.+
T Consensus 138 ~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 138 VT----YEEAKQFAEENG-----LLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp SC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHHHHHHH
T ss_pred cC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 22 233444455544 478999999999999998644
No 51
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=173.73 Aligned_cols=172 Identities=16% Similarity=0.094 Sum_probs=105.3
Q ss_pred ccccCCCCcCCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceE
Q 010071 252 EKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT 331 (519)
Q Consensus 252 e~~~~~~~~~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT 331 (519)
..+.......+....++|+|+|.+|+|||||+++|++..... ....+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-----------------------------~~~~t~~~~ 65 (201)
T 2hup_A 15 VPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSE-----------------------------RQGSTIGVD 65 (201)
T ss_dssp -----------CCEEEEEEEEECTTSSHHHHHHHHHHSCC---------------------------------------C
T ss_pred ccCCCCCcccccccceEEEEECcCCCCHHHHHHHHhhCCCCC-----------------------------CCCCCcceE
Confidence 344444445556678999999999999999999998432100 001111222
Q ss_pred EEEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEE
Q 010071 332 MTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIV 410 (519)
Q Consensus 332 ~~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIV 410 (519)
.......+......+.||||||+++|...+..+++.+|++|+|+|++... .++ ....++..+.... ...|+||
T Consensus 66 ~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~---~~~~~~~~i~~~~~~~~piil 139 (201)
T 2hup_A 66 FTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRS---SFL---SVPHWIEDVRKYAGSNIVQLL 139 (201)
T ss_dssp EEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHH---HHH---THHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCEEE
Confidence 22222333334468999999999999999999999999999999998652 222 2222222222221 2245999
Q ss_pred EEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 411 VvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+||+|+....... .+++..+++..++ ..++++||++|+||.++|..+
T Consensus 140 v~NK~Dl~~~~~v~----~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~l~~~l 187 (201)
T 2hup_A 140 IGNKSDLSELREVS----LAEAQSLAEHYDI----LCAIETSAKDSSNVEEAFLRV 187 (201)
T ss_dssp EEECTTCGGGCCSC----HHHHHHHHHHTTC----SEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCccccccccC----HHHHHHHHHHcCC----CEEEEEeCCCCCCHHHHHHHH
Confidence 99999997432222 2233444555543 278999999999999998754
No 52
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.82 E-value=1.7e-19 Score=168.12 Aligned_cols=158 Identities=18% Similarity=0.153 Sum_probs=109.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 70 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTP-----------------------------AFVSTVGIDFKVKTVYRHDKR 70 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCCCEEEEEEEEETTEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CcCCceeEEEEEEEEEECCeE
Confidence 456899999999999999999998532110 111223444444444555566
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++.|...+..++..+|++|+|+|++... .+. .... ++..+... ...|+|||+||+|+....
T Consensus 71 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~ 143 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQE---SFA---AVQD-WATQIKTYSWDNAQVILVGNKCDLEDER 143 (189)
T ss_dssp EEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHH---HHH---THHH-HHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred EEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHH---HHH---HHHH-HHHHHHHhcCCCCCEEEEEECccccccc
Confidence 78999999999999999999999999999999998652 122 2222 22333332 234599999999997432
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .+.+..+.+.++ ++++++||++|.||.++++.+
T Consensus 144 ~~~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 144 VVP----AEDGRRLADDLG-----FEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp CSC----HHHHHHHHHHHT-----CEEEECBTTTTBSHHHHHHHH
T ss_pred CCC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHHHHHH
Confidence 211 223344444455 378999999999999998754
No 53
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.82 E-value=1.1e-20 Score=206.80 Aligned_cols=141 Identities=35% Similarity=0.444 Sum_probs=106.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.+||+||||+++|||||+.+|+...+.+.+... ...+. ......+|....|+.+|+|+......+.++
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~-------V~~~~--~~~~~~~D~~~~EreRGITI~s~~~~~~~~ 98 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGS-------VKARK--AARHATSDWMAMERERGISVTTSVMQFPYR 98 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHH-------HHHC----------------------CTTTEEEEEET
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccce-------eecCc--cccccccCChHHHHHCCCcEeeceEEEEEC
Confidence 456789999999999999999999988886644321 11111 011245788999999999999888899999
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
++.|+|||||||.+|...+.+.++.+|.+|+|||+..| .+.+++.+++++...++| .|+++||||....+
T Consensus 99 ~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~G--------V~~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 99 DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG--------VEAQTRKLMDVCRMRATP-VMTFVNKMDREALH 168 (548)
T ss_dssp TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCC-EEEEEECTTSCCCC
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCC--------cccccHHHHHHHHHhCCc-eEEEEecccchhcc
Confidence 99999999999999999999999999999999999998 789999999999999999 79999999987543
No 54
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.82 E-value=7.7e-20 Score=167.42 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=104.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++..... ....+.+.... ....+....
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~~ 56 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVS-----------------------------DYDPTIEDSYT-KICSVDGIP 56 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCS-----------------------------SCCTTCCEEEE-EEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCcc-----------------------------ccCCCcCceEE-EEEEECCEE
Confidence 457899999999999999999998532100 01111222222 222334444
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeecccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~~ 420 (519)
..+.||||||+++|...+..++..+|++|+|+|++... . +.....++..++.. .+.| +|||+||+|+...
T Consensus 57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 129 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ---S---FNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQ 129 (181)
T ss_dssp EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH---H---HHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 68899999999999988888899999999999999752 2 22223333333232 3444 9999999999753
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..... +....+....+ ++++++||++|.||.++++.+
T Consensus 130 ~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~~l 166 (181)
T 2fn4_A 130 RQVPR----SEASAFGASHH-----VAYFEASAKLRLNVDEAFEQL 166 (181)
T ss_dssp CCSCH----HHHHHHHHHTT-----CEEEECBTTTTBSHHHHHHHH
T ss_pred cccCH----HHHHHHHHHcC-----CeEEEecCCCCCCHHHHHHHH
Confidence 22111 22233333333 478999999999999998754
No 55
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.82 E-value=1.7e-20 Score=174.22 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=106.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEE-eecC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA-YFDS 341 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~-~~~~ 341 (519)
..+.+||+|+|.+|||||||++.|.+.......... ........++.+.+...... .+..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~-------------------~~~~~~~~~t~~~~~~~~~~~~~~~ 71 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEM-------------------VSLATEDERTLFFDFLPLDIGEVKG 71 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCC-------------------EEEECSSCEEEEEEECCSSCCCSSS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccc-------------------cccccccccceeeeecccccccccC
Confidence 356789999999999999999777643211100000 00000011111221111111 2344
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh----CCCcEEEEEeeccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDA 417 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~~ppiIVVvNKiDl 417 (519)
....+.||||||+++|...+..+++.+|++|+|+|++.+........+. .+...+... ...|+|||+||+|+
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~----~l~~~l~~~~~~~~~~piilv~NK~Dl 147 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMR----NMRENLAEYGLTLDDVPIVIQVNKRDL 147 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHH----HHHHHHHHTTCCTTSSCEEEEEECTTS
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHH----HHHHHHHhhccccCCCCEEEEEEchhc
Confidence 5678999999999999999999999999999999999552222222222 222222222 33459999999999
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .. .+++..+++..++ .+++++||++|+||.++|+.+
T Consensus 148 ~~~--~~----~~~~~~~~~~~~~----~~~~~~Sa~~~~gv~~l~~~l 186 (198)
T 3t1o_A 148 PDA--LP----VEMVRAVVDPEGK----FPVLEAVATEGKGVFETLKEV 186 (198)
T ss_dssp TTC--CC----HHHHHHHHCTTCC----SCEEECBGGGTBTHHHHHHHH
T ss_pred ccc--cC----HHHHHHHHHhcCC----ceEEEEecCCCcCHHHHHHHH
Confidence 742 22 2344455554443 278999999999999998754
No 56
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.82 E-value=2.4e-20 Score=172.96 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=105.3
Q ss_pred CCCCcCCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEE
Q 010071 256 LPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA 335 (519)
Q Consensus 256 ~~~~~~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~ 335 (519)
.........+.++|+|+|.+|+|||||+++|++..... ...+.|.+.
T Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~t~~~~~--- 57 (181)
T 2h17_A 11 SSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH------------------------------TSPTIGSNV--- 57 (181)
T ss_dssp ----------CEEEEEEEETTSSHHHHHHHHHTTSCEE------------------------------EECCSSSSC---
T ss_pred cCCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCc------------------------------cCCcCceee---
Confidence 33344456678999999999999999999999532200 011112111
Q ss_pred EEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEe
Q 010071 336 VAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVN 413 (519)
Q Consensus 336 ~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvN 413 (519)
..+...+..+.||||||++++...+..++..+|++|+|+|++... .+.....++..++.. ....|+|||+|
T Consensus 58 -~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~N 130 (181)
T 2h17_A 58 -EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE------RISVTREELYKMLAHEDLRKAGLLIFAN 130 (181)
T ss_dssp -EEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTT------THHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred -EEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHhChhhCCCeEEEEEE
Confidence 112235689999999999999999999999999999999999752 133344444444433 23345999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+|+... ...+++ ...+....+....+.++++||++|.||.++|+.+
T Consensus 131 K~Dl~~~--~~~~~i----~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 131 KQDVKEC--MTVAEI----SQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp CTTSTTC--CCHHHH----HHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCcccC--CCHHHH----HHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 9999742 222222 2222222223345689999999999999998754
No 57
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.82 E-value=1.3e-19 Score=165.86 Aligned_cols=162 Identities=14% Similarity=0.164 Sum_probs=106.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|.+|+|||||+++|++.... ....+..+.+.......+...
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFD-----------------------------TQLFHTIGVEFLNKDLEVDGH 54 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCC-----------------------------C----CCSEEEEEEEEEETTE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCceeeeEEEEEEEECCE
Confidence 345789999999999999999999843210 011122333333333444444
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeeccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~ 419 (519)
...+.||||||++++...+..++..+|++|+|+|++... .+..+..+..++...... .+. |+|+|+||+|+..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~-p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQ---SFQNLSNWKKEFIYYADVKEPESF-PFVILGNKIDISE 130 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTCSCTTTS-CEEEEEECTTCSS
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHH---HHHHHHHHHHHHHHHccccccCCC-cEEEEEECCcccc
Confidence 568999999999999999999999999999999999762 222222222222222211 233 5999999999873
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..... +.+..+++.. ..++++++||++|.||.++|+.+
T Consensus 131 -~~~~~----~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l 168 (177)
T 1wms_A 131 -RQVST----EEAQAWCRDN----GDYPYFETSAKDATNVAAAFEEA 168 (177)
T ss_dssp -CSSCH----HHHHHHHHHT----TCCCEEECCTTTCTTHHHHHHHH
T ss_pred -cccCH----HHHHHHHHhc----CCceEEEEeCCCCCCHHHHHHHH
Confidence 12222 2233333322 23578999999999999998754
No 58
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1e-19 Score=164.88 Aligned_cols=160 Identities=17% Similarity=0.118 Sum_probs=101.8
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+.++|+|+|.+|+|||||+++|++..... ......+.+.. ....+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~~~ 51 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRE-----------------------------SYIPTVEDTYR-QVISCDKSIC 51 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCS-----------------------------SCCCCSCEEEE-EEEEETTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCCccccEE-EEEEECCEEE
Confidence 35799999999999999999998432100 00011111111 1223444556
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010071 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.+.||||||++++...+..++..+|++|+|+|++.... ++....+...+..+.......|+++|+||+|+.......
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~ 128 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQS---LEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQ 128 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHH---HHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSC
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHH---HHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccC
Confidence 89999999999999998889999999999999996521 222222222222221111223499999999997532211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .....+....+ ++++++||++|.|+.++++.+
T Consensus 129 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 161 (172)
T 2erx_A 129 S----SEAEALARTWK-----CAFMETSAKLNHNVKELFQEL 161 (172)
T ss_dssp H----HHHHHHHHHHT-----CEEEECBTTTTBSHHHHHHHH
T ss_pred H----HHHHHHHHHhC-----CeEEEecCCCCcCHHHHHHHH
Confidence 1 12223333343 478999999999999998754
No 59
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.82 E-value=8.3e-20 Score=172.55 Aligned_cols=159 Identities=19% Similarity=0.156 Sum_probs=107.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|+|||||+++|++..... ...+..+.+.......+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 56 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN-----------------------------DYISTIGVDFKIKTVELDGKT 56 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT-----------------------------TCCCSSCCCEEEEEEEETTEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCcccceeEEEEEEECCEE
Confidence 456899999999999999999998532110 011122333333334444455
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||+++|...+..++..+|++|||+|++... . +..... ++..+... ...|+|||+||+|+....
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~---s---~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (206)
T 2bcg_Y 57 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE---S---FNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKR 129 (206)
T ss_dssp EEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHH---H---HHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHH---H---HHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 68999999999999999999999999999999999752 1 222222 22222222 224599999999997532
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.... +.+..+....+ ++++++||++|.||.++|..+.
T Consensus 130 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 130 VVEY----DVAKEFADANK-----MPFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp CSCH----HHHHHHHHHTT-----CCEEECCTTTCTTHHHHHHHHH
T ss_pred ccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHHH
Confidence 2222 22333444444 4789999999999999998653
No 60
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.81 E-value=7.7e-20 Score=170.80 Aligned_cols=162 Identities=19% Similarity=0.167 Sum_probs=106.9
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec
Q 010071 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
......++|+|+|.+|||||||+++|++...... ....+.+.+. ..+.
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~----------------------------~~~~t~~~~~----~~~~ 59 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK----------------------------HITATVGYNV----ETFE 59 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC--------------------------------CCCCCSSEEE----EEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc----------------------------ccccccceeE----EEEE
Confidence 3456678999999999999999999985322110 0111223222 2245
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---h-------CCCcEEE
Q 010071 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---F-------GVDQLIV 410 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~-------~~ppiIV 410 (519)
.....+.||||||+++|...+..++..+|++|||+|++... + +.....++..++.. . +.| +||
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s---~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iil 132 (199)
T 4bas_A 60 KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHL---R---LCVVKSEIQAMLKHEDIRRELPGGGRVP-FLF 132 (199)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGG---G---HHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEE
T ss_pred eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHH---H---HHHHHHHHHHHHhChhhhhcccccCCCC-EEE
Confidence 67789999999999999999999999999999999999762 2 22333333333322 1 444 999
Q ss_pred EEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 411 VvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+||+|+... ...+++.+.+.... . .....++++++||++|+||.++|+.+
T Consensus 133 v~NK~Dl~~~--~~~~~~~~~~~~~~--~-~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (199)
T 4bas_A 133 FANKMDAAGA--KTAAELVEILDLTT--L-MGDHPFVIFASNGLKGTGVHEGFSWL 183 (199)
T ss_dssp EEECTTSTTC--CCHHHHHHHHTHHH--H-HTTSCEEEEECBTTTTBTHHHHHHHH
T ss_pred EEECcCCCCC--CCHHHHHHHhcchh--h-ccCCeeEEEEeeCCCccCHHHHHHHH
Confidence 9999999843 22333433332111 0 01234689999999999999998754
No 61
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.81 E-value=1e-19 Score=168.25 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=105.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 58 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD-----------------------------DSNHTIGVEFGSKIINVGGKY 58 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-----------------------------TCCCCSEEEEEEEEEEETTEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceEEEEEEEEECCEE
Confidence 457899999999999999999998432211 011112223333333344444
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH--HhCCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~--~~~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++++...+..++..+|++|+|+|++... .+. ....++..+.. ..+. |++||+||+|+....
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~ 131 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE---TYN---ALTNWLTDARMLASQNI-VIILCGNKKDLDADR 131 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHSCTTC-EEEEEEECGGGGGGC
T ss_pred EEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCC-cEEEEEECccccccc
Confidence 78999999999999999999999999999999999752 222 22222222111 1233 599999999997432
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.... .++..+.+..+ ++++++||++|.||.++|+.+
T Consensus 132 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 132 EVTF----LEASRFAQENE-----LMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp CSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHHHHHHH
T ss_pred ccCH----HHHHHHHHHcC-----CEEEEecCCCCCCHHHHHHHH
Confidence 2222 22334444444 488999999999999998754
No 62
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.81 E-value=5.3e-20 Score=171.56 Aligned_cols=163 Identities=15% Similarity=0.124 Sum_probs=105.6
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..++.++|+|+|.+|+|||||+++|++..... ......+.+.......+..
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 66 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD-----------------------------RTEATIGVDFRERAVDIDG 66 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCS-----------------------------SCCCCCSCCEEEEEEEETT
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCCcceEEEEEEEEECC
Confidence 35678999999999999999999998432110 0111223333333344444
Q ss_pred CCeEEEEEeCCCCCcch-hhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010071 342 KNYHVVVLDSPGHKDFV-PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~-~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
....+.||||||+++|. ..+..+++.+|++|||+|++... ++..+..+..++...+...+.| +|||+||+|+...
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 142 (189)
T 1z06_A 67 ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA---SFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSA 142 (189)
T ss_dssp EEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGG
T ss_pred EEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 45789999999999988 77778889999999999998752 2222222222222222123444 9999999999743
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccC---CCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN---QNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tG---egI~el~~~i 466 (519)
.... .+....+.+..+ ++++++||++| +||.++|..+
T Consensus 143 ~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~~~~i~~l~~~l 182 (189)
T 1z06_A 143 IQVP----TDLAQKFADTHS-----MPLFETSAKNPNDNDHVEAIFMTL 182 (189)
T ss_dssp CCSC----HHHHHHHHHHTT-----CCEEECCSSSGGGGSCHHHHHHHH
T ss_pred ceeC----HHHHHHHHHHcC-----CEEEEEeCCcCCcccCHHHHHHHH
Confidence 2211 223334444444 47899999999 9999988754
No 63
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=2.4e-20 Score=173.42 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=109.3
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
+.++.++|+|+|.+|+|||||+++|++.... ....+..+.+.......+..
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 61 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFD-----------------------------PELAATIGVDFKVKTISVDG 61 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------TTCCCCCSEEEEEEEEEETT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------ccCCCccceEEEEEEEEECC
Confidence 3456799999999999999999999843210 01122334555555555666
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh---CCCcEEEEEeecccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 418 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~~ppiIVVvNKiDlv 418 (519)
....+.||||||++++...+..++..+|++|||+|++... . +.....+ +..+... ...|+|||+||+|+.
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s---~~~~~~~-~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRD---T---FVKLDNW-LNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHH---H---HHTHHHH-HHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHH---H---HHHHHHH-HHHHHHhcCcCCCcEEEEEECCcCc
Confidence 6788999999999999999999999999999999998752 1 2122222 2222221 224599999999995
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. ... .+....+++..+ +.++++||++|.||.++++.+
T Consensus 135 ~~-~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 135 NR-EVD----RNEGLKFARKHS-----MLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp SC-CSC----HHHHHHHHHHTT-----CEEEECCTTTCTTHHHHHHHH
T ss_pred cc-ccC----HHHHHHHHHHcC-----CEEEEecCCCCCCHHHHHHHH
Confidence 32 111 223334444444 478999999999999998754
No 64
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=168.37 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=107.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
....++|+|+|.+|+|||||+++|++..... ......+.+.......+...
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 63 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTE-----------------------------SYISTIGVDFKIRTIELDGK 63 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------CCCCCSSEEEEEEEEEETTE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCcccceEEEEEEEECCE
Confidence 3457899999999999999999998432110 11112333344344444444
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~ 420 (519)
...+.||||||++.+...+..++..+|++|+|+|++... .+. .... .+..+... ...|+|||+||+|+...
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFN---NVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHH---HHH---THHH-HHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHH---HHH---HHHH-HHHHHHHhcCCCCCEEEEEECcccccc
Confidence 578999999999999999999999999999999999752 222 2222 22222222 12349999999999753
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..... +....+...++ ++++++||++|.||.++|..+
T Consensus 137 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gv~~l~~~l 173 (196)
T 3tkl_A 137 KVVDY----TTAKEFADSLG-----IPFLETSAKNATNVEQSFMTM 173 (196)
T ss_dssp CCSCH----HHHHHHHHHTT-----CCEEEECTTTCTTHHHHHHHH
T ss_pred cccCH----HHHHHHHHHcC-----CcEEEEeCCCCCCHHHHHHHH
Confidence 32222 22334444444 478999999999999998754
No 65
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.81 E-value=6.2e-20 Score=173.20 Aligned_cols=161 Identities=16% Similarity=0.102 Sum_probs=103.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|.+|+|||||+++|++..... ......+... .....+...
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~ 70 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSE-----------------------------GYDPTVENTY-SKIVTLGKD 70 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------------------------CCCCCSEEEE-EEEEC----
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCC-----------------------------CCCCccceEE-EEEEEECCE
Confidence 4567999999999999999999999532210 0111122222 233344556
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
...+.||||||+++|...+..++..+|++|+|+|++... .+..+..+...+.......+.| +|||+||+|+.....
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~ 146 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLH---SFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPERE 146 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHH---HHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCC
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccccc
Confidence 788999999999999999999999999999999999652 2222222222222222223445 999999999974322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .....+.+..+ ++++++||++|.||.++|..+
T Consensus 147 v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 147 VQA----VEGKKLAESWG-----ATFMESSARENQLTQGIFTKV 181 (201)
T ss_dssp SCH----HHHHHHHHHHT-----CEEEECCTTCHHHHHHHHHHH
T ss_pred cCH----HHHHHHHHHhC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 222 22333444444 478999999999999998754
No 66
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.81 E-value=2.9e-19 Score=168.15 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=108.4
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|.+|+|||||+++|++..... ......+++.......+.....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 57 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTP-----------------------------AFVSTVGIDFKVKTIYRNDKRI 57 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCS-----------------------------CCCCCCSEEEEEEEEEETTEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CcCCccceeEEEEEEEECCeEE
Confidence 46899999999999999999998432100 1112234455444455555667
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccccc
Q 010071 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~~ 422 (519)
.+.||||||+++|...+..++..+|++|+|+|++... . +..... ++..+... ...|+|||+||+|+.....
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s---~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 130 (203)
T 1zbd_A 58 KLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEE---S---FNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDERV 130 (203)
T ss_dssp EEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHH---H---HHHHHH-HHHHHHHHSCSSCEEEEEEECTTCTTSCC
T ss_pred EEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHH---H---HHHHHH-HHHHHHHhcCCCCCEEEEEECcccCcccc
Confidence 8999999999999999999999999999999998752 1 222222 22223332 2345999999999974322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... +.+..+.+.++ ++++++||++|.||.++|+.+
T Consensus 131 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 131 VSS----ERGRQLADHLG-----FEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp SCH----HHHHHHHHHHT-----CEEEECBTTTTBSSHHHHHHH
T ss_pred cCH----HHHHHHHHHCC-----CeEEEEECCCCCCHHHHHHHH
Confidence 222 23334444444 378999999999999998754
No 67
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.81 E-value=1.7e-19 Score=161.96 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=102.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
|+.++|+|+|.+|+|||||+++|++...... .....+... .....+....
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----------------------------~~~~~~~~~-~~~~~~~~~~ 50 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDE-----------------------------CDPTIEDSY-RKQVVIDGET 50 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSC-----------------------------CCTTCCEEE-EEEEEETTEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccc-----------------------------cCCccceEE-EEEEEECCEE
Confidence 4568999999999999999999985321100 000111111 1222334445
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||++++...+..++..+|++|+|+|+.... .+..+..+...+.......+.| +++|+||+|+... ..
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~-~~ 125 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK---SFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAAR-TV 125 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCC-CS
T ss_pred EEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhc-cc
Confidence 67899999999999988888999999999999998652 1211212222222211112444 9999999998752 11
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+.+..+.+..+ ++++++||++|.|+.++++.+
T Consensus 126 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 126 E----SRQAQDLARSYG-----IPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp C----HHHHHHHHHHHT-----CCEEEECTTTCTTHHHHHHHH
T ss_pred C----HHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHHHH
Confidence 1 223334444444 368999999999999998644
No 68
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=6.3e-20 Score=175.24 Aligned_cols=162 Identities=20% Similarity=0.153 Sum_probs=108.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-CC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SK 342 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-~~ 342 (519)
...++|+|+|.+|+|||||+|+|++..... ......++|.......+. ..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~ 77 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLA-----------------------------FASKTPGRTQHINYFSVGPAA 77 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSS-----------------------------CTTCCCCSCCCEEEEEESCTT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcce-----------------------------eecCCCCcccceEEEEecCCC
Confidence 356899999999999999999999542100 011123444444444444 56
Q ss_pred CeEEEEEeCCCCCc----------chhhh---hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEE
Q 010071 343 NYHVVVLDSPGHKD----------FVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (519)
Q Consensus 343 ~~~l~LiDTPG~~~----------f~~~~---~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiI 409 (519)
+..+.||||||+.. |...+ ......+|++|||+|+..+ +......++..+...+.| +|
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--------~~~~~~~~~~~l~~~~~p-~i 148 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRP--------LTELDRRMIEWFAPTGKP-IH 148 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHGGGCCC-EE
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EE
Confidence 68899999999533 23333 3334448889999999976 334556666777666766 99
Q ss_pred EEEeecccccccchhHHHHHHHHHHHHHhc---CCCCCCceEEEeccccCCCcccccccc
Q 010071 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSC---GFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 410 VVvNKiDlv~~~~e~le~i~e~l~~~l~~~---g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|+||+|+.. ........+.+...+... +. ...++++++||++|.||.++++.+
T Consensus 149 ~v~nK~Dl~~--~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~SA~~g~gv~~l~~~l 205 (223)
T 4dhe_A 149 SLLTKCDKLT--RQESINALRATQKSLDAYRDAGY-AGKLTVQLFSALKRTGLDDAHALI 205 (223)
T ss_dssp EEEECGGGSC--HHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEeccccCC--hhhHHHHHHHHHHHHHhhhhccc-CCCCeEEEeecCCCcCHHHHHHHH
Confidence 9999999984 333334444444444442 11 124689999999999999998754
No 69
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.81 E-value=1.1e-19 Score=167.75 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=81.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|+|||||+++|++..... ...+..+.........+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 56 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS-----------------------------TFISTIGIDFKIRTIELDGKR 56 (183)
T ss_dssp SEEEEEEEECCCCC---------------------------------------------CHHHHHCEEEEEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCcccceeEEEEEEECCEE
Confidence 356899999999999999999998432100 011112332333333344445
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||+++|...+..++..+|++|+|+|++... + +..... ++..+... ...|+|||+||+|+....
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEK---S---FDNIRN-WIRNIEEHASADVEKMILGNKCDVNDKR 129 (183)
T ss_dssp EEEEEEEC---------CCTTTTTCSEEEEEEETTCHH---H---HHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSCC
T ss_pred EEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHH---H---HHHHHH-HHHHHHHhcCCCCCEEEEEECccCCccC
Confidence 78999999999999988889999999999999999752 1 222222 22223322 223599999999997432
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .+++..+++..+ ++++++||++|.||.++|..+
T Consensus 130 ~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 130 QVS----KERGEKLALDYG-----IKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp CSC----HHHHHHHHHHHT-----CEEEECCC---CCHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 211 223334444444 478999999999999998754
No 70
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.81 E-value=1.5e-19 Score=169.20 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=108.2
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..++.++|+|+|.+|+|||||+++|++..... ....+.+.... ....+..
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~ 68 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPT-----------------------------AYVPTVFENFS-HVMKYKN 68 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCSEEEEE-EEEEETT
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------ccCCeeeeeeE-EEEEECC
Confidence 34567999999999999999999998532100 00111222222 1233444
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~ 420 (519)
....+.||||||+++|...+..++..+|++|+|+|++...+ +......+...+... ...|+|||+||+|+...
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTS------FDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 55678999999999999999999999999999999997621 222223333333332 23459999999999742
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... ....+++..+.+.+++. .++++||++|+||.++|+.+
T Consensus 143 ~~~--~~~~~~~~~~~~~~~~~----~~~~~Sa~~~~gi~~l~~~l 182 (194)
T 3reg_A 143 GSD--DVTKQEGDDLCQKLGCV----AYIEASSVAKIGLNEVFEKS 182 (194)
T ss_dssp TTT--CCCHHHHHHHHHHHTCS----CEEECBTTTTBSHHHHHHHH
T ss_pred CCC--cccHHHHHHHHHhcCCC----EEEEeecCCCCCHHHHHHHH
Confidence 111 12234455555556642 37999999999999998754
No 71
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.81 E-value=5e-20 Score=166.55 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
+||+|+|.+|+|||||+++|++..... ..++.+. ....+......+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~------------------------------~~~t~~~----~~~~~~~~~~~~ 46 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT------------------------------TIPTIGF----NVETVEYKNISF 46 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC------------------------------CCCCSSC----CEEEEECSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc------------------------------ccCcCce----eEEEEEECCEEE
Confidence 479999999999999999998432100 0111111 112234467899
Q ss_pred EEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeecccccccchh
Q 010071 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 347 ~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.||||||++++...+..++..+|++|+|+|++... .+.....++..++.. ....|+|+|+||+|+... ..
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~ 118 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE------RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MN 118 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CC
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CC
Confidence 99999999999988888999999999999998652 133333344444332 123459999999999742 22
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+++.+. +....+....++++++||++|.||.++++.+
T Consensus 119 ~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (164)
T 1r8s_A 119 AAEITDK----LGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156 (164)
T ss_dssp HHHHHHH----TTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHH----hCcccccCccEEEEEcccCCCcCHHHHHHHH
Confidence 2222222 2222222345689999999999999998754
No 72
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=7.2e-20 Score=170.97 Aligned_cols=158 Identities=17% Similarity=0.135 Sum_probs=107.8
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|.+|+|||||+++|++..... ...++.+.+. ..+...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~----~~~~~~ 65 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE-----------------------------DMIPTVGFNM----RKITKG 65 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCSEEE----EEEEET
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------ccCCCCceeE----EEEEeC
Confidence 4567999999999999999999998532110 0111122222 224456
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeeccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~ 419 (519)
...+.||||||+++|...+..++..+|++|||+|++... .+.....++..++.. .+.| +|||+||+|+..
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 138 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE------KIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPG 138 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHH------HHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCcc
Confidence 789999999999999998888999999999999998652 233344444444432 3444 999999999974
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. ...+++.+. +....+....+.++++||++|.||.++|+.+
T Consensus 139 ~--~~~~~~~~~----~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 179 (188)
T 1zd9_A 139 A--LDEKELIEK----MNLSAIQDREICCYSISCKEKDNIDITLQWL 179 (188)
T ss_dssp C--CCHHHHHHH----TTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred C--CCHHHHHHH----hChhhhccCCeeEEEEECCCCCCHHHHHHHH
Confidence 2 122222222 2222222345689999999999999998754
No 73
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.81 E-value=7.2e-20 Score=201.96 Aligned_cols=169 Identities=26% Similarity=0.415 Sum_probs=109.7
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC---
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~--- 341 (519)
+.+||+|+|++|+|||||+++|++..+.+....+ ....++....++++|+|+......+.+
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~~~~~~~~~ 66 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM----------------EAQVLDSMDLERERGITIKAQSVTLDYKAS 66 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC------------------------------------------CEEEEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEecC
Confidence 4689999999999999999999977665543321 124567777888899998765555433
Q ss_pred --CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010071 342 --KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 342 --~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
..+.++|||||||.+|...+..++..+|++|+|+|++.+ ...++..++..+...++| +|+|+||+|+..
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~g--------v~~qt~~~~~~~~~~~ip-iIvViNKiDl~~ 137 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG--------VEAQTLANCYTAMEMDLE-VVPVLNKIDLPA 137 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTC--------CCTHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEeeeccCccc
Confidence 357899999999999999999999999999999999987 445777777777777887 999999999985
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. .+...+++... +++.. ..++++||++|.||.++++.+
T Consensus 138 a~---~~~v~~ei~~~---lg~~~--~~vi~vSAktg~GI~~Ll~~I 176 (599)
T 3cb4_D 138 AD---PERVAEEIEDI---VGIDA--TDAVRCSAKTGVGVQDVLERL 176 (599)
T ss_dssp CC---HHHHHHHHHHH---TCCCC--TTCEEECTTTCTTHHHHHHHH
T ss_pred cc---HHHHHHHHHHH---hCCCc--ceEEEeecccCCCchhHHHHH
Confidence 42 33344444443 34432 246999999999999998754
No 74
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.80 E-value=8.7e-20 Score=174.73 Aligned_cols=160 Identities=22% Similarity=0.176 Sum_probs=112.2
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec
Q 010071 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
...+..++|+|+|.+|+|||||+++|+.... ........|++.......+.
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~ 60 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYVATLGVEVHPLVFHTN 60 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHH-----------------------------TCEEETTTTEEEEEEEEEET
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCC-----------------------------CCCCCCccceeEEEEEEEEC
Confidence 3456779999999999999999999763211 01122345666666666677
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010071 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
.....+.||||||++.|...+..++..+|++|+|+|++... . +.....++..+.......|+|||+||+|+...
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 61 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRV---T---YKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp TEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHH---H---HHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred CEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 77789999999999999988888999999999999999762 2 22223333333333333459999999999743
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... . ....+.+..+ +.++++||++|.||.++|..+
T Consensus 135 ~~~--~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 169 (221)
T 3gj0_A 135 KVK--A----KSIVFHRKKN-----LQYYDISAKSNYNFEKPFLWL 169 (221)
T ss_dssp SSC--G----GGCCHHHHHT-----CEEEECBGGGTBTTTHHHHHH
T ss_pred ccc--H----HHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 211 1 1122233333 478999999999999998754
No 75
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.80 E-value=3.8e-19 Score=163.81 Aligned_cols=162 Identities=16% Similarity=0.107 Sum_probs=105.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|.+|+|||||+++|++..... ....+.+... .....+....
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~ 52 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPG-----------------------------EYIPTVFDNY-SANVMVDGKP 52 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCS-----------------------------SCCCCSCCEE-EEEEEETTEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CcCCccccee-EEEEEECCEE
Confidence 567899999999999999999998432100 0000111111 1122344455
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.||||||+++|...+..++..+|++|+|+|++.+.+ +......++..+... ...|+|+|+||+|+....
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~- 125 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPAS------FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK- 125 (186)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH-
T ss_pred EEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhh------HHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc-
Confidence 678899999999999888889999999999999987521 222222233333332 233499999999997431
Q ss_pred hhHHH---------HHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~---------i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+. ..++...+.+..++ ++++++||++|.||.++|+.+
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l~~~l 174 (186)
T 1mh1_A 126 DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKTVFDEA 174 (186)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHHHHHH
T ss_pred hhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEecCCCccCHHHHHHHH
Confidence 11111 11233344444442 478999999999999998754
No 76
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.80 E-value=2.8e-19 Score=168.29 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=105.9
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|.+|+|||||+++|++..... ......+.+.......+...
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 55 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSN-----------------------------QYKATIGADFLTKEVMVDDR 55 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCCSEEEEEEEEESSSC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCcccceEEEEEEEECCE
Confidence 3467899999999999999999998532210 01112233333334444555
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH------hCCCcEEEEEeecc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMD 416 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~------~~~ppiIVVvNKiD 416 (519)
...+.||||||++.+...+..++..+|++|+|+|++.+. .+. ....++..+... .+. |+|||+||+|
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~~-piilv~nK~D 128 (207)
T 1vg8_A 56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPN---TFK---TLDSWRDEFLIQASPRDPENF-PFVVLGNKID 128 (207)
T ss_dssp EEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHHCCSSGGGS-CEEEEEECTT
T ss_pred EEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHH---HHH---HHHHHHHHHHHhcccccCCCC-cEEEEEECCC
Confidence 578999999999999988889999999999999998762 222 222222222222 233 4999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+... .... +.+..+.... ..++++++||++|.||.++++.+.
T Consensus 129 l~~~-~~~~----~~~~~~~~~~----~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (207)
T 1vg8_A 129 LENR-QVAT----KRAQAWCYSK----NNIPYFETSAKEAINVEQAFQTIA 170 (207)
T ss_dssp SSCC-CSCH----HHHHHHHHHT----TSCCEEECBTTTTBSHHHHHHHHH
T ss_pred Cccc-ccCH----HHHHHHHHhc----CCceEEEEeCCCCCCHHHHHHHHH
Confidence 9732 2122 2223333311 235789999999999999987653
No 77
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=8.7e-20 Score=169.81 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=102.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++..... ..++.+.+. ..+...+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------------------------~~~t~~~~~----~~~~~~~ 59 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH------------------------------TSPTIGSNV----EEIVINN 59 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEE------------------------------EECCSCSSC----EEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc------------------------------CcCCCccce----EEEEECC
Confidence 457899999999999999999998432210 001111111 1122356
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++++...+..++..+|++|+|+|++... .+.....++..++.. ....|+|+|+||+|+...
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~- 132 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE------RISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC- 132 (187)
T ss_dssp EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTT------THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC-
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH------HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC-
Confidence 89999999999999998889999999999999998762 133344444444432 123459999999999742
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+++. ..+....+...+++++++||++|+||.++++.+
T Consensus 133 -~~~~~i~----~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (187)
T 1zj6_A 133 -MTVAEIS----QFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172 (187)
T ss_dssp -CCHHHHH----HHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred -CCHHHHH----HHhChhhhcCCCcEEEEccCCCCcCHHHHHHHH
Confidence 2222333 222222233345689999999999999998754
No 78
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.80 E-value=8.8e-20 Score=171.30 Aligned_cols=157 Identities=15% Similarity=0.020 Sum_probs=103.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|++|||||||+++|.+..... ..++.+.+ ...+...+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~------------------------------~~~t~~~~----~~~~~~~~ 66 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT------------------------------LQPTWHPT----SEELAIGN 66 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC------------------------------CCCCCSCE----EEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc------------------------------cccCCCCC----eEEEEECC
Confidence 456799999999999999999998532110 01112222 12233455
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~ 421 (519)
..+.+|||||++++...+..+++.+|++|+|+|++... + +.....++..++.. ....|+|+|+||+|+..
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-- 138 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE---R---FDEARVELDALFNIAELKDVPFVILGNKIDAPN-- 138 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGG---G---HHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChH---H---HHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--
Confidence 89999999999999988888999999999999999762 2 33333333333332 12345999999999974
Q ss_pred chhHHHHHHHHHHHHHhcC-------CCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCG-------FKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g-------~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
....+ ++...+.... .....++++++||++|+||.++|+.+
T Consensus 139 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 186 (190)
T 1m2o_B 139 AVSEA----ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 186 (190)
T ss_dssp CCCHH----HHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred CCCHH----HHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHH
Confidence 22222 2333332221 11234689999999999999998754
No 79
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.80 E-value=6.6e-20 Score=170.64 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=105.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|||||||+++|.+.... ...++.|.+. ..+...+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~------------------------------~~~~t~g~~~----~~~~~~~ 59 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS------------------------------HITPTQGFNI----KSVQSQG 59 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE------------------------------EEEEETTEEE----EEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC------------------------------cccCcCCeEE----EEEEECC
Confidence 35689999999999999999999843110 1112233222 1223347
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++.|...+..++..+|++|+|+|++... .+.....++..++.. ....|+|+|+||+|+...
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~- 132 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK------RFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA- 132 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG------GHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC-
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHH------HHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC-
Confidence 89999999999999998889999999999999998652 133333333333332 123359999999999743
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+++ ...+.........++++++||++|+||.++|+.+
T Consensus 133 -~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 133 -APASEI----AEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172 (181)
T ss_dssp -CCHHHH----HHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred -CCHHHH----HHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence 222222 2222222223345689999999999999998754
No 80
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.80 E-value=4.4e-20 Score=203.55 Aligned_cols=170 Identities=31% Similarity=0.400 Sum_probs=113.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee----
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF---- 339 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~---- 339 (519)
.+.++|+|+|++|+|||||+++|++..+.+....+ ....++....++++|+|+......+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGITI~~~~~~~~~~~ 67 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK----------------REQLLDTLDVERERGITVKMQAVRMFYKA 67 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------------CCCCSEEEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEEc
Confidence 35689999999999999999999976655433221 1245677778888899875433333
Q ss_pred -cCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010071 340 -DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 340 -~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
+...+.++|||||||.+|...+..++..+|++|+|||++.+ ...++.+++..+...++| +|+|+||+|+.
T Consensus 68 ~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~g--------v~~qt~~~~~~a~~~~ip-iIvviNKiDl~ 138 (600)
T 2ywe_A 68 KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQG--------IEAQTVANFWKAVEQDLV-IIPVINKIDLP 138 (600)
T ss_dssp TTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTB--------CCHHHHHHHHHHHHTTCE-EEEEEECTTST
T ss_pred CCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCC--------ccHHHHHHHHHHHHCCCC-EEEEEeccCcc
Confidence 23347899999999999999999999999999999999987 456777777777788887 99999999997
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .+...+++... +++.. ..++++||++|.||.++++.+
T Consensus 139 ~a~---~~~v~~el~~~---lg~~~--~~vi~vSAktg~GI~~Lle~I 178 (600)
T 2ywe_A 139 SAD---VDRVKKQIEEV---LGLDP--EEAILASAKEGIGIEEILEAI 178 (600)
T ss_dssp TCC---HHHHHHHHHHT---SCCCG--GGCEECBTTTTBSHHHHHHHH
T ss_pred ccC---HHHHHHHHHHh---hCCCc--ccEEEEEeecCCCchHHHHHH
Confidence 542 23334444333 35432 257999999999999998754
No 81
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.80 E-value=6.4e-20 Score=170.09 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=105.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++.. .. ...++.+.+. ..+...+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~----------------------------~~~~t~~~~~----~~~~~~~ 61 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD----------------------------TISPTLGFNI----KTLEHRG 61 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS----------------------------SCCCCSSEEE----EEEEETT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC----------------------------cccccCccce----EEEEECC
Confidence 467899999999999999999998532 00 0111122221 1223357
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++++...+..++..+|++|+|+|++... .+.....++..++.. ....|+|+|+||+|+...
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~- 134 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ------RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA- 134 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHH------HHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC-
Confidence 89999999999999999999999999999999998762 133333344444332 123459999999999742
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+++. ..+....+....++++++||++|.|+.++++.+
T Consensus 135 -~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (186)
T 1ksh_A 135 -LSCNAIQ----EALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174 (186)
T ss_dssp -CCHHHHH----HHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred -CCHHHHH----HHhChhhccCCceEEEEeeCCCCCCHHHHHHHH
Confidence 2222222 222222222345689999999999999998754
No 82
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.80 E-value=3e-19 Score=163.64 Aligned_cols=165 Identities=19% Similarity=0.150 Sum_probs=93.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-C
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-S 341 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-~ 341 (519)
..+.++|+|+|.+|+|||||+++|++..... ...+..+.+.......+. .
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 55 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQ-----------------------------QYKATIGADFLTKEVTVDGD 55 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCT-----------------------------TC---CCCSCEEEEECCSSS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCc-----------------------------ccCCccceEEEEEEEEEcCC
Confidence 3457899999999999999999998532110 001111222222222233 3
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeeccccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~ 419 (519)
....+.||||||++.|...+..++..+|++|+|+|++... .++.+..+..++...... ....|++||+||+|+..
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNAS---SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHH---HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChH---HHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 4578999999999999999999999999999999998762 222222222222222110 02235999999999964
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...... .+.+..+.+.. ..++++++||++|.||.++|+.+
T Consensus 133 ~~~~v~---~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l 172 (182)
T 1ky3_A 133 SKKIVS---EKSAQELAKSL----GDIPLFLTSAKNAINVDTAFEEI 172 (182)
T ss_dssp GGCCSC---HHHHHHHHHHT----TSCCEEEEBTTTTBSHHHHHHHH
T ss_pred ccccCC---HHHHHHHHHhc----CCCeEEEEecCCCCCHHHHHHHH
Confidence 221111 12223333322 23578999999999999998754
No 83
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=7.6e-20 Score=171.02 Aligned_cols=160 Identities=19% Similarity=0.162 Sum_probs=111.3
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
+....+||+|+|.+|+|||||+++|++..... ......+++.......+..
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 69 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTP-----------------------------AFVSTVGIDFKVKTVYRHE 69 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCC-----------------------------CEEEEETTTEEEEEEEETT
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCc-----------------------------ccCCCeeeEEEEEEEEECC
Confidence 34567899999999999999999998532110 1112234444555556677
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~ 419 (519)
....+.||||||++.|...+..++..+|++|+|+|++... .++. ... ++..+... ...|+|||+||+|+..
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~---~~~-~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFNA---VQD-WATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHH---HHHT---HHH-HHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHH---HHHH---HHH-HHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 7889999999999999999999999999999999998652 2222 222 23333332 2335999999999874
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...... +....+.+..+ ++++++||++|.||.++|+.+
T Consensus 143 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 143 ERVVPT----EKGQLLAEQLG-----FDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp GCCSCH----HHHHHHHHHHT-----CEEEECBTTTTBSHHHHHHHH
T ss_pred ccccCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHHHHHHH
Confidence 322222 23333444444 478999999999999998754
No 84
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.80 E-value=2.9e-19 Score=166.18 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=93.8
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec
Q 010071 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~ 340 (519)
.+.++.++|+|+|.+|+|||||+++|++..... ......+... .....+.
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~ 65 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVD-----------------------------EYDPTIEDSY-RKQVVID 65 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCS-----------------------------CCCTTCCEEE-EEEEEET
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCcc-----------------------------ccCCccceEE-EEEEEEC
Confidence 346778999999999999999999998532100 0000111111 1222334
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010071 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
.....+.||||||++++...+..++..+|++|+|+|+.... .+..+..+...+..+....+.| ++||+||+|+...
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~ 141 (190)
T 3con_A 66 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSK---SFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTR 141 (190)
T ss_dssp TEEEEEEEEECCC-----------CTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCC
T ss_pred CEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHH---HHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCcc
Confidence 44567999999999999998889999999999999998752 1221212222222211112444 9999999998742
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .+.+..+++..+ ++++++||++|.|+.+++..+
T Consensus 142 -~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 142 -TVD----TKQAHELAKSYG-----IPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp -CSC----HHHHHHHHHHHT-----CCEEECCTTTCTTHHHHHHHH
T ss_pred -cCC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 111 233344444445 368999999999999998754
No 85
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.80 E-value=1.4e-19 Score=164.36 Aligned_cols=157 Identities=18% Similarity=0.084 Sum_probs=95.9
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|.+|+|||||+++|++....... ....+.........+......
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH-----------------------------EMENSEDTYERRIMVDKEEVT 52 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-----------------------------------------CEEEEEEEETTEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc-----------------------------cCCCcCCeeeEEEEECCeEEE
Confidence 478999999999999999999843221100 001111122223334555678
Q ss_pred EEEEeCCCCCcchh-hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--CCcEEEEEeecccccccc
Q 010071 346 VVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 346 l~LiDTPG~~~f~~-~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--~ppiIVVvNKiDlv~~~~ 422 (519)
+.||||||++++.. ....++..+|++|+|+|++... + +.....++..+..... ..|+|+|+||+|+.....
T Consensus 53 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 126 (169)
T 3q85_A 53 LIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRR---S---FSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE 126 (169)
T ss_dssp EEEECCCCC--------CHHHHHCSEEEEEEETTCHH---H---HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC
T ss_pred EEEEECCCccccchhhhhhhhccCCEEEEEEECCChH---H---HHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhccc
Confidence 89999999998876 4455677899999999999752 2 2233334444443322 234999999999974322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. .+....+.+..+ ++++++||++|.|+.++|+.+
T Consensus 127 ~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 127 VS----LEEGRHLAGTLS-----CKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp SC----HHHHHHHHHHTT-----CEEEECBTTTTBSHHHHHHHH
T ss_pred CC----HHHHHHHHHHcC-----CcEEEecCccCCCHHHHHHHH
Confidence 22 233344444444 478999999999999998754
No 86
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.80 E-value=5.7e-21 Score=206.48 Aligned_cols=157 Identities=27% Similarity=0.330 Sum_probs=118.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.++++|+|+|++++|||||+++|++.... ....+|+|.+.....+.+.+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~-------------------------------~~e~~GIT~~i~~~~v~~~~ 50 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVA-------------------------------SGEAGGITQHIGAYHVETEN 50 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHS-------------------------------BTTBCCCCCCSSCCCCCTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCc-------------------------------cccCCCeeEeEEEEEEEECC
Confidence 36688999999999999999999842110 01124555555555566677
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..++|||||||++|...+..++..+|++|||+|+..+ ...++.+++.++...++| +|+|+||+|+..++.+
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g--------~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~ 121 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG--------VMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPD 121 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB--------SCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCC
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC--------ccHHHHHHHHHHHhcCce-EEEEEEeccccccCHH
Confidence 8899999999999999999999999999999999987 456778888888888888 9999999999754332
Q ss_pred hHHHHHHHHHHHHHhcCCC----CCCceEEEeccccCCCccccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFK----DASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~----~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
++. . .+...++. ...++++++||++|.||.++++.+.
T Consensus 122 ~v~---~----~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~ 162 (501)
T 1zo1_I 122 RVK---N----ELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAIL 162 (501)
T ss_dssp CTT---C----CCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTT
T ss_pred HHH---H----HHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhh
Confidence 211 1 11111111 1236899999999999999998764
No 87
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.80 E-value=2.6e-19 Score=162.21 Aligned_cols=156 Identities=17% Similarity=0.123 Sum_probs=101.5
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|.+|+|||||+++|++..... ...+..+.+.......+......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 53 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-----------------------------SFITTIGIDFKIKTVDINGKKVK 53 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC------------------------------------CCEEEEEEESSSCEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEE
Confidence 5799999999999999999998532100 00111222222233334444578
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccchh
Q 010071 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e~ 424 (519)
+.||||||++++...+..++..+|++|+|+|++...+ +.....++..+.... ...|+++|+||+|+... ...
T Consensus 54 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~ 126 (170)
T 1g16_A 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT------FTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-VVT 126 (170)
T ss_dssp EEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH------HHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC-CSC
T ss_pred EEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC-ccC
Confidence 9999999999999888889999999999999987521 212222222222222 13359999999999421 111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+.+..+.+..+ ++++++||++|.|+.++++.+
T Consensus 127 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 127 ----ADQGEALAKELG-----IPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp ----HHHHHHHHHHHT-----CCEEECBTTTTBSHHHHHHHH
T ss_pred ----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHHHHHH
Confidence 123333444444 368999999999999998754
No 88
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.80 E-value=9.7e-20 Score=173.58 Aligned_cols=176 Identities=18% Similarity=0.059 Sum_probs=109.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
....++|+|+|.+|||||||+++|++.... .......+.+...........
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 58 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFE-----------------------------KNYNATVGAVNHPVTFLDDQG 58 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTT-----------------------------CEEETTTTEEEEEEEEEBTTS
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCCccceeeEEEEEEeCCC
Confidence 456789999999999999999999843210 011112333332222222222
Q ss_pred -CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeeccccc
Q 010071 343 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 343 -~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~ 419 (519)
...+.||||||++.+...+..++..+|++|+|+|++.+.+ +. ....++..+... .+. |+|||+||+|+..
T Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~ 131 (218)
T 4djt_A 59 NVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT---CQ---NLARWVKEFQAVVGNEA-PIVVCANKIDIKN 131 (218)
T ss_dssp CEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCSSS-CEEEEEECTTCC-
T ss_pred cEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCC-CEEEEEECCCCcc
Confidence 2789999999999998888888999999999999997632 22 222222222222 234 4999999999874
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhh
Q 010071 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLL 483 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~ll 483 (519)
.... ..+.+..+.+.. +++++++||++|.||.++|..+...............+.
T Consensus 132 ~~~~----~~~~~~~~~~~~-----~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~ 186 (218)
T 4djt_A 132 RQKI----SKKLVMEVLKGK-----NYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVN 186 (218)
T ss_dssp ---C----CHHHHHHHTTTC-----CCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCC
T ss_pred cccc----CHHHHHHHHHHc-----CCcEEEEecCCCCCHHHHHHHHHHHHhcccccccccccC
Confidence 2111 122333443333 357999999999999999987654333333333333333
No 89
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=168.13 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=103.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|.+|+|||||+++|++..... ......+.+.......+...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 75 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-----------------------------NISATLGVDFQMKTLIVDGE 75 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC---------------------------------------CEEEEEEETTE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCc-----------------------------cCCCCccceeEEEEEEECCE
Confidence 4567999999999999999999998532100 01112233333344445555
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh---CCCcEEEEEeeccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~~ppiIVVvNKiDlv~ 419 (519)
...+.||||||+++|...+..++..+|++|||+|++...+ +. ... .++..+... +.| +|||+||+|+..
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~~~-~~~~~i~~~~~~~~p-iilv~NK~Dl~~ 147 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS---FL---NIR-EWVDMIEDAAHETVP-IMLVGNKADIRD 147 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHH---HH---THH-HHHHHHHHHC---CC-EEEEEECGGGHH
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHH---HH---HHH-HHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 6789999999999999999999999999999999987622 22 222 222223222 344 999999999973
Q ss_pred ccc--hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 420 YSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~--e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .......+....+.+..+ ++++++||++|.||.++|..+
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 148 TAATEGQKCVPGHFGEKLAMTYG-----ALFCETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHT-----CEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccccccCHHHHHHHHHHcC-----CeEEEeeCCCCCCHHHHHHHH
Confidence 210 000011223334444444 478999999999999998744
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.80 E-value=6.5e-20 Score=173.49 Aligned_cols=157 Identities=15% Similarity=0.052 Sum_probs=99.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+..+|+|+|++|||||||+++|.+..... ..++.+.+. ..+...+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~------------------------------~~~t~~~~~----~~~~~~~ 68 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ------------------------------HVPTLHPTS----EELTIAG 68 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------------------------------------CCCCCSC----EEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc------------------------------cCCCCCcee----EEEEECC
Confidence 456789999999999999999998422100 000111111 1223345
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++++...+..+++.+|++|+|+|++... .+.....++..++.. ....|+|+|+||+|+..
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-- 140 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE------RLLESKEELDSLMTDETIANVPILILGNKIDRPE-- 140 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHH------HHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--
Confidence 89999999999999988888999999999999998752 233333444444332 12334999999999974
Q ss_pred chhHHHHHHHHHHHHHhcC---------CC---CCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCG---------FK---DASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g---------~~---~~~i~~IpvSA~tGegI~el~~~i 466 (519)
....++ +...+.... +. ...++++++||++|+||.++|+.+
T Consensus 141 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 193 (198)
T 1f6b_A 141 AISEER----LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 193 (198)
T ss_dssp CCCHHH----HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred cCCHHH----HHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHH
Confidence 222222 333333221 11 134689999999999999998754
No 91
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.80 E-value=1.4e-19 Score=165.77 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=94.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
|+.++|+|+|++|||||||+++|++..... ...++++.......+...+
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 49 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYI-------------------------------GNWPGVTVEKKEGEFEYNG 49 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSC-------------------------------C-----CCCCCEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeec-------------------------------cCCCCcceeeeEEEEEECC
Confidence 356899999999999999999998532100 0012222222222233356
Q ss_pred eEEEEEeCCCCCcchh------hhhhccc--cCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010071 344 YHVVVLDSPGHKDFVP------NMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~------~~~~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
..+.+|||||+.+|.. ....++. .+|++++|+|+... . ....++..+...+.| +|+|+||+
T Consensus 50 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---------~-~~~~~~~~~~~~~~p-~ilv~nK~ 118 (165)
T 2wji_A 50 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------E-RNLYLTLQLMEMGAN-LLLALNKM 118 (165)
T ss_dssp EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---------H-HHHHHHHHHHHTTCC-EEEEEECH
T ss_pred cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---------h-HhHHHHHHHHhcCCC-EEEEEEch
Confidence 7899999999988752 2233443 79999999999853 1 112233333445655 99999999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+..... ... ....+.+.++ ++++++||++|+||.++|+.+
T Consensus 119 Dl~~~~~--~~~---~~~~~~~~~~-----~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 119 DLAKSLG--IEI---DVDKLEKILG-----VKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp HHHHHTT--CCC---CHHHHHHHHT-----SCEEECBGGGTBSHHHHHHHH
T ss_pred HhccccC--hhh---HHHHHHHHhC-----CCEEEEEcCCCCCHHHHHHHH
Confidence 9864211 111 1122223333 468999999999999998754
No 92
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=1.6e-19 Score=162.54 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|.+|+|||||+++|++..... .....+++.......+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV------------------------------VADVPGVTRDLKEGVVETDRGRF 51 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------------------------------CCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee------------------------------ccCCCCceecceEEEEEeCCceE
Confidence 589999999999999999998543211 01112333333334445566789
Q ss_pred EEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010071 347 VVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 347 ~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
.||||||+.. +...+..++..+|++|+|+|++.+ +.....++..++...+.| +++|+||+|+..
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAE--------LTQADYEVAEYLRRKGKP-VILVATKVDDPK 122 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSC--------CCHHHHHHHHHHHHHTCC-EEEEEECCCSGG
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCc--------ccHhHHHHHHHHHhcCCC-EEEEEECccccc
Confidence 9999999887 344556678899999999999976 223344555566666666 999999999985
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+ .+..+. ..++ .+++++||++|.|+.++++.+
T Consensus 123 ~-~~-------~~~~~~-~~~~----~~~~~~Sa~~~~gv~~l~~~l 156 (161)
T 2dyk_A 123 H-EL-------YLGPLY-GLGF----GDPIPTSSEHARGLEELLEAI 156 (161)
T ss_dssp G-GG-------GCGGGG-GGSS----CSCEECBTTTTBSHHHHHHHH
T ss_pred c-hH-------hHHHHH-hCCC----CCeEEEecccCCChHHHHHHH
Confidence 3 11 112222 3343 156999999999999998743
No 93
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.80 E-value=2.7e-19 Score=166.04 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=105.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|+|||||+++|++..... .....+.+........ +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~---~ 67 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF------------------------------VSKTPGKTRSINFYLV---N 67 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC------------------------------CCSSCCCCCCEEEEEE---T
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc------------------------------ccCCCCCccCeEEEEE---C
Confidence 456799999999999999999999543111 1111233332222222 3
Q ss_pred eEEEEEeCCC----------CCcchhhhhhc---cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEE
Q 010071 344 YHVVVLDSPG----------HKDFVPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (519)
Q Consensus 344 ~~l~LiDTPG----------~~~f~~~~~~~---l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIV 410 (519)
..+.|||||| ++.+...+..+ ...+|++++|+|+..+ .......+...+...+.| +|+
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~i~ 138 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIP--------PQDSDLMMVEWMKSLNIP-FTI 138 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHHHTTCC-EEE
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCC--------CCHHHHHHHHHHHHcCCC-EEE
Confidence 4688999999 33344433333 3446999999999865 233444556666666766 999
Q ss_pred EEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 411 VvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+||+|+.. ....+...+.+..++...+ .++++++||++|+||.++|+.+
T Consensus 139 v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~l~~~l 188 (195)
T 3pqc_A 139 VLTKMDKVK--MSERAKKLEEHRKVFSKYG----EYTIIPTSSVTGEGISELLDLI 188 (195)
T ss_dssp EEECGGGSC--GGGHHHHHHHHHHHHHSSC----CSCEEECCTTTCTTHHHHHHHH
T ss_pred EEEChhcCC--hHHHHHHHHHHHHHHhhcC----CCceEEEecCCCCCHHHHHHHH
Confidence 999999983 3445566667777766543 3578999999999999998744
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.80 E-value=9.7e-20 Score=171.29 Aligned_cols=157 Identities=18% Similarity=0.126 Sum_probs=101.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|.+|+|||||+++|++.... ...++.+ .....+....
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~------------------------------~~~~t~~----~~~~~~~~~~ 72 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV------------------------------TTIPTIG----FNVETVEYKN 72 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE------------------------------EEEEETT----EEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc------------------------------ccCCcCc----eeEEEEEECC
Confidence 56789999999999999999999832110 0011122 1122344467
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||+++|...+..++..+|++|+|+|++... .+.....++..++... ...|+|||+||+|+...
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~------s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~- 145 (192)
T 2b6h_A 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE------RVQESADELQKMLQEDELRDAVLLVFANKQDMPNA- 145 (192)
T ss_dssp EEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC-
Confidence 89999999999999988888999999999999998752 2333334444443321 23459999999999742
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+++.+. +.........++++++||++|.||.++++.+
T Consensus 146 -~~~~~i~~~----~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 185 (192)
T 2b6h_A 146 -MPVSELTDK----LGLQHLRSRTWYVQATCATQGTGLYDGLDWL 185 (192)
T ss_dssp -CCHHHHHHH----TTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred -CCHHHHHHH----hCcccccCCceEEEECcCCCcCCHHHHHHHH
Confidence 222223222 2222222345689999999999999998744
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.80 E-value=8.2e-20 Score=168.40 Aligned_cols=157 Identities=20% Similarity=0.205 Sum_probs=102.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|++|||||||+++|++..... ..++.+... ..+...+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------------------~~~t~~~~~----~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVT------------------------------TKPTIGFNV----ETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE------------------------------ECSSTTCCE----EEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCc------------------------------cCCcCccce----EEEEECC
Confidence 457899999999999999999998432200 001112111 1122346
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++++...+..++..+|++|+|+|++... .+.....++..++.. ....|+|+|+||+|+...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~- 134 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD------RMSTASKELHLMLQEEELQDAALLVFANKQDQPGA- 134 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTT------THHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC-
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC-
Confidence 89999999999999998899999999999999998652 133333344444332 123459999999999742
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+ ++...+....+....++++++||++|+||.++++.+
T Consensus 135 -~~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (183)
T 1moz_A 135 -LSAS----EVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174 (183)
T ss_dssp -CCHH----HHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHH
T ss_pred -CCHH----HHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 2222 233333333333445689999999999999998754
No 96
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=167.29 Aligned_cols=160 Identities=18% Similarity=0.175 Sum_probs=105.9
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
....++|+|+|.+|+|||||+++|++..... ......+.+.......+...
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 73 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCE-----------------------------ACKSTVGVDFKIKTVELRGK 73 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC-------------------------------------CCTTEEEEEEEEEETTE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------CCCCccceeEEEEEEEECCe
Confidence 3457899999999999999999998432100 01112334444444444444
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~ 420 (519)
...+.||||||+++|...+..++..+|++|+|+|++...+ +. ... .++..+... ...|+|||+||+|+...
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~~---~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FD---DLP-KWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH---THH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHH-HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 5789999999999999999999999999999999997622 22 222 222333332 12359999999999743
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..... +++..+.+... .++++++||++|.||.++|+.+
T Consensus 147 ~~v~~----~~~~~~~~~~~----~~~~~~~SA~~g~gi~~l~~~l 184 (192)
T 2il1_A 147 REITR----QQGEKFAQQIT----GMRFCEASAKDNFNVDEIFLKL 184 (192)
T ss_dssp CCSCH----HHHHHHHHTST----TCEEEECBTTTTBSHHHHHHHH
T ss_pred cccCH----HHHHHHHHhcC----CCeEEEEeCCCCCCHHHHHHHH
Confidence 22111 22333433321 3588999999999999998754
No 97
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.79 E-value=1.3e-19 Score=184.37 Aligned_cols=158 Identities=23% Similarity=0.270 Sum_probs=108.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~- 342 (519)
.+.-.|+|+|.+|||||||+|+|++....+... .+++|.......+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~------------------------------~~~tT~~~~~~~~~~~~ 57 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISP------------------------------KAGTTRMRVLGVKNIPN 57 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS------------------------------SSCCCCSCEEEEEEETT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCC------------------------------CCCceeeEEEEEEecCC
Confidence 345679999999999999999999654332211 1233333333334445
Q ss_pred CeEEEEEeCCCCCcch----------hhhhhccccCCeEEEEeecCCCcccccccchhHHHHHH-HHHHHHhCCCcEEEE
Q 010071 343 NYHVVVLDSPGHKDFV----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREH-AQLIRSFGVDQLIVA 411 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~----------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~-l~ll~~~~~ppiIVV 411 (519)
+..++||||||+.++. ..+..++..+|++|+|+|++.+. ......+ +..+...+.| +|+|
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~--------~~~~~~~~~~~l~~~~~p-vilV 128 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGW--------RPRDEEIYQNFIKPLNKP-VIVV 128 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBS--------CHHHHHHHHHHTGGGCCC-EEEE
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCC--------CchhHHHHHHHHHhcCCC-EEEE
Confidence 7899999999986544 56677888999999999999762 2334444 5556666666 9999
Q ss_pred EeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 412 vNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+||+|+... ...+....+.+.. .++ ...+++++||++|.|+.++++.+.
T Consensus 129 ~NK~Dl~~~-~~~~~~~~~~l~~---~~~---~~~~i~~vSA~~g~gv~~L~~~l~ 177 (308)
T 3iev_A 129 INKIDKIGP-AKNVLPLIDEIHK---KHP---ELTEIVPISALKGANLDELVKTIL 177 (308)
T ss_dssp EECGGGSSS-GGGGHHHHHHHHH---HCT---TCCCEEECBTTTTBSHHHHHHHHH
T ss_pred EECccCCCC-HHHHHHHHHHHHH---hcc---CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999731 2333333333333 332 234789999999999999987643
No 98
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.79 E-value=2.1e-20 Score=208.14 Aligned_cols=135 Identities=33% Similarity=0.505 Sum_probs=118.3
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+.+||+|+||+++|||||+.+|+...+.+.+.... . .-...+|....|+++|+|+......+.++++
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v--------~-----~g~~~~D~~~~EreRGITI~s~~~~~~~~~~ 67 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSV--------D-----KGTTRTDNTLLERQRGITIQTGITSFQWENT 67 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSC--------C-----CSCCSTTCSTTHHHHSSCSSCCCCCCBCSSC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCcccccc--------c-----cCCcccCCcHHHHhCCCcEEeeeEEEEECCE
Confidence 45789999999999999999999888877553210 0 1124588899999999999999999999999
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010071 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
.|+|||||||.+|..++.++++.+|++|+|||+..| ++.+++.++.++...++| .|+++||||....+
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~G--------V~~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~ 135 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG--------VQAQTRILFHALRKMGIP-TIFFINKIDQNGID 135 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCT--------TCSHHHHHHHHHHHHTCS-CEECCEECCSSSCC
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCC--------CcHHHHHHHHHHHHcCCC-eEEEEeccccccCC
Confidence 999999999999999999999999999999999998 788999999999999999 58899999987543
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.79 E-value=1.2e-19 Score=168.92 Aligned_cols=157 Identities=19% Similarity=0.147 Sum_probs=105.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|.+|+|||||+++|++..... ..++.+... ..+....
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------------------~~~t~~~~~----~~~~~~~ 65 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT------------------------------TVPTVGVNL----ETLQYKN 65 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE------------------------------ECSSTTCCE----EEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC------------------------------cCCCCceEE----EEEEECC
Confidence 457899999999999999999997321100 011112111 1123357
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++++...+..++..+|++|+|+|++... .+.....++..++... ...|+|+|+||+|+...
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~- 138 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD------RMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA- 138 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCT------THHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC-
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHH------HHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC-
Confidence 89999999999999988888999999999999998762 1333344444444331 23459999999999743
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+++.+ .+....+...+++++++||++|.||.++++.+
T Consensus 139 -~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 178 (189)
T 2x77_A 139 -ASEAEIAE----QLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWL 178 (189)
T ss_dssp -CCHHHHHH----HTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred -CCHHHHHH----HhChhhccCCceEEEEccCCCccCHHHHHHHH
Confidence 22222222 22222223345689999999999999998754
No 100
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.79 E-value=8.4e-19 Score=166.43 Aligned_cols=163 Identities=15% Similarity=0.076 Sum_probs=104.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|.+|+|||||+++|++...... .....+. .......+...
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-----------------------------~~~t~~~-~~~~~~~~~~~ 76 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------------------YIPTVFD-NYSANVMVDGK 76 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC------------------------------CCCCSEE-EEEEEEECC-C
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCC-----------------------------cCCeecc-eeEEEEEECCE
Confidence 46679999999999999999999984321000 0000111 11122234445
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeeccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~ 421 (519)
...+.||||||+++|...+..++..+|++|+|+|++...+ +......++..+... ...|+|||+||+|+....
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS------FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCH
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCCEEEEEechhhccch
Confidence 5677899999999999999999999999999999997621 222222333344433 223499999999998532
Q ss_pred chhHHH---------HHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~---------i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. ..+. ..++...+.+..++ .+++++||++|+||.++|+.+
T Consensus 151 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~l~~~l 199 (204)
T 4gzl_A 151 D-TIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKTVFDEA 199 (204)
T ss_dssp H-HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHHHHHH
T ss_pred h-hhhhhhccccccccHHHHHHHHHhcCC----cEEEEeeCCCCCCHHHHHHHH
Confidence 1 1111 12334445555553 368999999999999998754
No 101
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.79 E-value=2.3e-19 Score=182.32 Aligned_cols=155 Identities=20% Similarity=0.209 Sum_probs=105.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+..+|+|+|++|||||||+|+|++....+.... +++|.......+...+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~------------------------------~~tTr~~i~~i~~~~~ 54 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPR------------------------------PQTTRKRLRGILTEGR 54 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSS------------------------------SCCCCSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCC------------------------------CCceeEEEEEEEEeCC
Confidence 4567899999999999999999996544322111 1111111111233467
Q ss_pred eEEEEEeCCCCCc--------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEe
Q 010071 344 YHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVN 413 (519)
Q Consensus 344 ~~l~LiDTPG~~~--------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvN 413 (519)
.+++||||||+.+ |......+++.+|++|+|+|++.+ +.....+++..+... +.| +|+|+|
T Consensus 55 ~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~--------~~~~~~~i~~~l~~~~~~~p-~ilV~N 125 (301)
T 1wf3_A 55 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHP--------PTPEDELVARALKPLVGKVP-ILLVGN 125 (301)
T ss_dssp EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSC--------CCHHHHHHHHHHGGGTTTSC-EEEEEE
T ss_pred cEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCC--------CChHHHHHHHHHHhhcCCCC-EEEEEE
Confidence 8999999999876 566677889999999999999876 223455555666655 555 999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccccc
Q 010071 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIR 468 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~ 468 (519)
|+|+... .. .+.+.+..+ . ...+++|+||++|.|+.++++.+..
T Consensus 126 K~Dl~~~--~~--~~~~~~~~~---~----~~~~~~~iSA~~g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 126 KLDAAKY--PE--EAMKAYHEL---L----PEAEPRMLSALDERQVAELKADLLA 169 (301)
T ss_dssp CGGGCSS--HH--HHHHHHHHT---S----TTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred CcccCCc--hH--HHHHHHHHh---c----CcCcEEEEeCCCCCCHHHHHHHHHH
Confidence 9999742 21 022222222 1 2347899999999999999886543
No 102
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.79 E-value=4.5e-19 Score=166.87 Aligned_cols=168 Identities=16% Similarity=0.149 Sum_probs=103.7
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceE--EEEEEEee
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT--MTVAVAYF 339 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT--~~~~~~~~ 339 (519)
...+.+||+|+|.+|||||||+++|.+..... ...++. .......+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~ 63 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--------------------------------ETLFLESTNKIYKDDI 63 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG--------------------------------GGGGCCCCCSCEEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--------------------------------ceeeeccccceeeeec
Confidence 35567899999999999999999887431110 001111 11111112
Q ss_pred -cCCCeEEEEEeCCCCCcchhhh---hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010071 340 -DSKNYHVVVLDSPGHKDFVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 340 -~~~~~~l~LiDTPG~~~f~~~~---~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
......+.||||||+++|.... ..+++.+|++|+|+|++.. +... +..+..++..+.......|+|||+||+
T Consensus 64 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~---~~~~~~~l~~~~~~~~~~piilv~nK~ 139 (196)
T 3llu_A 64 SNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YMEA---LTRLHITVSKAYKVNPDMNFEVFIHKV 139 (196)
T ss_dssp CCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC-CHHH---HHHHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred cCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc-hHHH---HHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 2456789999999999998777 6889999999999999975 1111 222222222222223334599999999
Q ss_pred ccccccc--hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 416 DAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 416 Dlv~~~~--e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+..... +....+.......+........++.|+++||++ .||.++|..+
T Consensus 140 Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 140 DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKV 191 (196)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred ccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence 9874211 112223333333333333333457899999999 9999998754
No 103
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=7.2e-19 Score=165.01 Aligned_cols=159 Identities=19% Similarity=0.136 Sum_probs=102.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|.+|+|||||+++|++..... ......+... .....+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~ 75 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW-----------------------------EYDPTLESTY-RHQATIDDEV 75 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCS-----------------------------CCCTTCCEEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCc-----------------------------ccCCCCCceE-EEEEEECCEE
Confidence 457899999999999999999998532110 0011112111 1223344556
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.||||||++. ...+..++..+|++|+|+|++... .++.+..+...+.......+.| +|||+||+|+......
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v 150 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRG---SFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQV 150 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCS
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhhCCCCCc-EEEEEECccccccccc
Confidence 7899999999988 666777888999999999998752 2222222223332222223444 9999999999753222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCC-Ccccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGe-gI~el~~~i 466 (519)
.. ++...+.+..+ ++++++||++|. ||.++|+.+
T Consensus 151 ~~----~~~~~~~~~~~-----~~~~~~Sa~~g~~gi~~l~~~l 185 (196)
T 2atv_A 151 ST----EEGEKLATELA-----CAFYECSACTGEGNITEIFYEL 185 (196)
T ss_dssp CH----HHHHHHHHHHT-----SEEEECCTTTCTTCHHHHHHHH
T ss_pred CH----HHHHHHHHHhC-----CeEEEECCCcCCcCHHHHHHHH
Confidence 22 22333333443 478999999999 999998754
No 104
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.79 E-value=3.7e-19 Score=165.91 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=100.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|+|||||+++|++..... ......+.|.......+ +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~---~ 68 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLA-----------------------------RTSSKPGKTQTLNFYII---N 68 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------CCEEEEEE---T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-----------------------------ccCCCCCceeeEEEEEE---C
Confidence 456899999999999999999998532100 01112333333333333 2
Q ss_pred eEEEEEeCCC----------CCcchhhhhhccccC---CeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEE
Q 010071 344 YHVVVLDSPG----------HKDFVPNMISGATQS---DAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (519)
Q Consensus 344 ~~l~LiDTPG----------~~~f~~~~~~~l~~a---D~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIV 410 (519)
..+.|||||| ++.+...+..++..+ |++|+|+|++.+. .....+++..+...+.| +++
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~p-~i~ 139 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAP--------SNDDVQMYEFLKYYGIP-VIV 139 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHHTTCC-EEE
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEE
Confidence 3699999999 445555455555544 9999999998762 23334455556666666 999
Q ss_pred EEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 411 VvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+||+|+.. ...+....+++...+.. ...++++++||++|.|+.++++.+
T Consensus 140 v~nK~Dl~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l~~~l 189 (195)
T 1svi_A 140 IATKADKIP--KGKWDKHAKVVRQTLNI----DPEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp EEECGGGSC--GGGHHHHHHHHHHHHTC----CTTSEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcccCC--hHHHHHHHHHHHHHHcc----cCCCceEEEEccCCCCHHHHHHHH
Confidence 999999984 33344444455443321 124689999999999999998743
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.79 E-value=7.6e-19 Score=166.89 Aligned_cols=164 Identities=21% Similarity=0.198 Sum_probs=101.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~- 342 (519)
.+.++|+|+|++|+|||||+++|++..... ....++.......+...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~ 52 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD--------------------------------TQTSITDSSAIYKVNNNR 52 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCC--------------------------------BCCCCSCEEEEEECSSTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccc--------------------------------ccCCcceeeEEEEecCCC
Confidence 457899999999999999999998532100 00111111112233333
Q ss_pred CeEEEEEeCCCCCcchh-hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH----hCCCcEEEEEeeccc
Q 010071 343 NYHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDA 417 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~-~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~~ppiIVVvNKiDl 417 (519)
...+.||||||+++|.. .+..++..+|++|||+|++... .. +......+..++.. ....|+|||+||+|+
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 127 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ--RE---VKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 127 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH--HH---HHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC--HH---HHHHHHHHHHHHhhhhhcccCCCEEEEEECCCC
Confidence 67899999999999987 5667789999999999998520 01 11222223333222 112459999999999
Q ss_pred ccccchhHHHHHHHHHHHHHh-------------------cCCC---------C--CCceEEEeccccC------CCccc
Q 010071 418 VQYSKDRFDSIKVQLGTFLRS-------------------CGFK---------D--ASLTWIPLSALEN------QNLVT 461 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~l~~-------------------~g~~---------~--~~i~~IpvSA~tG------egI~e 461 (519)
... ...+.+.+.+...+.. .-.. . ..+.|+++||++| .||.+
T Consensus 128 ~~~--~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~ 205 (214)
T 2fh5_B 128 AMA--KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQD 205 (214)
T ss_dssp TTC--CCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHH
T ss_pred CCc--ccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHH
Confidence 843 3344555555555541 0111 0 1578999999999 99999
Q ss_pred ccccc
Q 010071 462 APDDG 466 (519)
Q Consensus 462 l~~~i 466 (519)
+|+.+
T Consensus 206 lf~~l 210 (214)
T 2fh5_B 206 LEKWL 210 (214)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98743
No 106
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.78 E-value=8.5e-19 Score=168.48 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=102.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|+|||||+++|++...... .....+++.......+....
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~ 61 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-----------------------------SKSTIGVEFATRTLEIEGKR 61 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-----------------------------------CCSEEEEEEEETTEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCcccceeEEEEEEECCEE
Confidence 4568999999999999999999985322110 01112222333333344444
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||+++|...+..+++.+|++|||+|++... . +..... ++..+... ...|+|||+||+|+....
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~---s---~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~~ 134 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSS---S---YENCNH-WLSELRENADDNVAVGLIGNKSDLAHLR 134 (223)
T ss_dssp EEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHH---H---HHHHHH-HHHHHHHHCC--CEEEEEECCGGGGGGC
T ss_pred EEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHH---H---HHHHHH-HHHHHHHhCCCCCeEEEEEECccccccc
Confidence 78999999999999999999999999999999998752 1 222222 22222322 123599999999997432
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... .+++..+.+..+ ++++++||++|+||.++|+.+
T Consensus 135 ~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 135 AVP----TEESKTFAQENQ-----LLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp CSC----HHHHHHHHHHTT-----CEEEECCCC-CCCHHHHHHHH
T ss_pred ccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 211 123334444444 478999999999999998764
No 107
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=1.8e-19 Score=180.41 Aligned_cols=154 Identities=22% Similarity=0.219 Sum_probs=107.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
|+.++|+|+|++|+|||||+|+|++... .....+|+|.+.....+...+
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~-------------------------------~v~~~~g~t~~~~~~~~~~~~ 49 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQ-------------------------------RVGNWAGVTVERKEGQFSTTD 49 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSSSEEEEEEEECSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeeEEEEEEEEEeCC
Confidence 4578999999999999999999985421 111235666666666677777
Q ss_pred eEEEEEeCCCCCcchhh----------hhhc--cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEE
Q 010071 344 YHVVVLDSPGHKDFVPN----------MISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~----------~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVV 411 (519)
..+.||||||+.++... ...+ ...+|++|+|+|++.. .....+...+...+.| +|+|
T Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~----------~~~~~~~~~l~~~~~p-~ivv 118 (274)
T 3i8s_A 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----------ERNLYLTLQLLELGIP-CIVA 118 (274)
T ss_dssp CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH----------HHHHHHHHHHHHHTCC-EEEE
T ss_pred CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh----------HHHHHHHHHHHhcCCC-EEEE
Confidence 89999999998887621 1112 2689999999999853 2334445555566777 9999
Q ss_pred EeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccC
Q 010071 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRG 469 (519)
Q Consensus 412 vNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~ 469 (519)
+||+|+.... .+....+.+.. .+| ++++++||++|.|+.++++.+...
T Consensus 119 ~NK~Dl~~~~--~~~~~~~~l~~---~lg-----~~~i~~SA~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 119 LNMLDIAEKQ--NIRIEIDALSA---RLG-----CPVIPLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp EECHHHHHHT--TEEECHHHHHH---HHT-----SCEEECCCGGGHHHHHHHHHHHTC
T ss_pred EECccchhhh--hHHHHHHHHHH---hcC-----CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 9999987432 11111233333 334 478999999999999999876443
No 108
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.78 E-value=5.9e-19 Score=168.01 Aligned_cols=159 Identities=15% Similarity=0.124 Sum_probs=103.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|.+|+|||||+++|++..... ....+.+.........+...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 72 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNP-----------------------------KFITTVGIDFREKRVVYNAQ 72 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCC-----------------------------EEEEEEEEEEEEEEEEEEC-
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCc-----------------------------CCCCceeEEEEEEEEEECCc
Confidence 3557899999999999999999998432100 01111222222222233333
Q ss_pred ----------CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-h--CCCcEE
Q 010071 343 ----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F--GVDQLI 409 (519)
Q Consensus 343 ----------~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~--~~ppiI 409 (519)
...+.||||||+++|...+..++..+|++|||+|++.... +.... .++..+.. . ...|+|
T Consensus 73 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s------~~~~~-~~l~~i~~~~~~~~~pii 145 (217)
T 2f7s_A 73 GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQS------FLNVR-NWMSQLQANAYCENPDIV 145 (217)
T ss_dssp ------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHH------HHHHH-HHHHTCCCCCTTTCCEEE
T ss_pred cccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHH------HHHHH-HHHHHHHHhcCcCCCCEE
Confidence 5789999999999999999999999999999999986511 11111 11211111 1 234599
Q ss_pred EEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 410 VVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
||+||+|+....... .+.+..+.+..+ ++++++||++|.||.++|+.+
T Consensus 146 lV~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~~l 193 (217)
T 2f7s_A 146 LIGNKADLPDQREVN----ERQARELADKYG-----IPYFETSAATGQNVEKAVETL 193 (217)
T ss_dssp EEEECTTCGGGCCSC----HHHHHHHHHHTT-----CCEEEEBTTTTBTHHHHHHHH
T ss_pred EEEECCccccccccC----HHHHHHHHHHCC-----CcEEEEECCCCCCHHHHHHHH
Confidence 999999997432211 233444444444 468999999999999998754
No 109
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.78 E-value=1.2e-19 Score=197.83 Aligned_cols=138 Identities=33% Similarity=0.446 Sum_probs=106.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|++|||||||+++|++..+.+...... ..++. ......+....++.+|+|+......+.+.+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v-------~~~~~--~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 81 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTI-------KSRKA--ARHATSDWMELEKQRGISVTTSVMQFPYKD 81 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHH-------HTC------CCHHHHHHHHHHHCCSSSSSEEEEEETT
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceee-------ecccc--ccceecccchhhhcCCeeEEEeEEEEEeCC
Confidence 356899999999999999999999776655322110 00000 001123444455667888777777788889
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
..++|||||||.+|...+..+++.+|++|+|+|+..+ ...++..++..+...++| +|+|+||+|+..
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g--------~~~~t~~~~~~~~~~~iP-iivviNK~Dl~~ 148 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG--------VEPRTIKLMEVCRLRHTP-IMTFINKMDRDT 148 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC--------SCHHHHHHHHHHHTTTCC-EEEEEECTTSCC
T ss_pred EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEeCCCCcc
Confidence 9999999999999999999999999999999999987 456777888888888887 999999999974
No 110
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=5.2e-19 Score=165.17 Aligned_cols=160 Identities=17% Similarity=0.110 Sum_probs=103.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|||||||+++|++..... ......+.+.. ....+....
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~~ 55 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD-----------------------------TYIPTIEDTYR-QVISCDKSV 55 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC-----------------------------TTSCCCCEEEE-EEEEETTEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------cccCcccccee-EEEEECCEE
Confidence 456899999999999999999998532100 00011111111 122344455
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.||||||+++|...+..++..+|++|+|+|++... .+..+..+...+..+... .+. |+|||+||+|+... .
T Consensus 56 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~-piilv~nK~Dl~~~-~ 130 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQ---SLEELGPIYKLIVQIKGSVEDI-PVMLVGNKCDETQR-E 130 (199)
T ss_dssp EEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHH---HHHTTHHHHHHHHHHHSCGGGS-CEEEEEECTTCSSC-S
T ss_pred EEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHHhcCCCCC-CEEEEEECccCCcc-c
Confidence 68999999999999988888999999999999998652 222222222222111111 133 49999999999742 1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
... +....+...++ ++++++||++|.||.++++.+.
T Consensus 131 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l~ 166 (199)
T 2gf0_A 131 VDT----REAQAVAQEWK-----CAFMETSAKMNYNVKELFQELL 166 (199)
T ss_dssp SCH----HHHHHHHHHHT-----CEEEECBTTTTBSHHHHHHHHH
T ss_pred cCH----HHHHHHHHHhC-----CeEEEEecCCCCCHHHHHHHHH
Confidence 111 22233334444 4789999999999999987653
No 111
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=4.3e-19 Score=188.96 Aligned_cols=209 Identities=19% Similarity=0.160 Sum_probs=132.2
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|++|||||||+|+|++....+. ...+|+|.+.....+...+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v------------------------------~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALV------------------------------SPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEE------------------------------CCCC------CCEEEEETTE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccccc------------------------------CCCCCCcCCceEEEEEECCE
Confidence 468999999999999999999996432211 11244554443344555677
Q ss_pred EEEEEeCCCCCcchhh------------hhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEE
Q 010071 345 HVVVLDSPGHKDFVPN------------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~------------~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVv 412 (519)
.+.+|||||+..+... ...++..+|++++|+|+..+. ..+..++..++...+.+ +|+|+
T Consensus 229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~--------~~~~~~i~~~l~~~~~~-~ilv~ 299 (439)
T 1mky_A 229 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGI--------TRQDQRMAGLMERRGRA-SVVVF 299 (439)
T ss_dssp EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCC--------CHHHHHHHHHHHHTTCE-EEEEE
T ss_pred EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEE
Confidence 8999999997543221 134567799999999999762 23344556666666766 99999
Q ss_pred eecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccccccchhhhhhhhhcccc-
Q 010071 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWMQLIPYGLLLENFRSLYL- 491 (519)
Q Consensus 413 NKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~~~~~~~~lle~l~~~~~- 491 (519)
||+|+........+++.+.+...+...+ ..+++++||++|.||.++++.+......+..++++..|++.+.....
T Consensus 300 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~ 375 (439)
T 1mky_A 300 NKWDLVVHREKRYDEFTKLFREKLYFID----YSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAF 375 (439)
T ss_dssp ECGGGSTTGGGCHHHHHHHHHHHCGGGT----TSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTT
T ss_pred ECccCCCchhhHHHHHHHHHHHHhccCC----CCcEEEEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHc
Confidence 9999985332224445555544443333 35789999999999999999877666666778888888887755422
Q ss_pred CCCeeeecCCceeEEecccceeeec
Q 010071 492 CPYVTFLNHSTGRCLPVANWRLELF 516 (519)
Q Consensus 492 ~~~~~~~~~~~g~~~p~~~~~~~l~ 516 (519)
.+..-..+-..++.....+..+.+|
T Consensus 376 ~~~~~~~ki~y~~q~~~~p~~~~~~ 400 (439)
T 1mky_A 376 TNLPRGLKIFFGVQVDIKPPTFLFF 400 (439)
T ss_dssp CCCSTTCCEEEEEEEETTTTEEEEE
T ss_pred CCCCCCcEEEEEEecCCCCCEEEEE
Confidence 1211111112344445555555554
No 112
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.78 E-value=9.9e-21 Score=206.21 Aligned_cols=159 Identities=25% Similarity=0.343 Sum_probs=116.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC-CC
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KN 343 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~-~~ 343 (519)
++++|+|+|++|+|||||+++|++..... ...+++|.+.....+.. .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-------------------------------~~~~giT~~i~~~~v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA-------------------------------MEAGGITQHIGAFLVSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH-------------------------------SSSCCBCCCTTSCCBCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-------------------------------ccCCceeEEEeEEEEEeCCC
Confidence 56789999999999999999998532211 01234444433333433 45
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..++|||||||++|...+..++..+|++|||+|+..+ ...++.+++.++...++| +|||+||+|+......
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg--------~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~ 122 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG--------VMKQTVESIQHAKDAHVP-IVLAINKCDKAEADPE 122 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC--------CCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCC
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCc-EEEEEecccccccchH
Confidence 6799999999999999999999999999999999987 567888999999988887 9999999999754433
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+......+...+..++ ..++++++||++|.||.++++.+
T Consensus 123 ~v~~~l~~~~~~~e~~~---~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 123 KVKKELLAYDVVCEDYG---GDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp SSSSHHHHTTSCCCCSS---SSEEECCCCSSSSCSSHHHHHHH
T ss_pred HHHHHHHhhhhhHHhcC---CCceEEEEECCCCCCchhHHHHH
Confidence 32222211111111111 24689999999999999998754
No 113
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=166.72 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=90.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|.+|+|||||+++|++..... ....+.+... .....+...
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~ 80 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPE-----------------------------SYTPTVFERY-MVNLQVKGK 80 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC------------------------------------CCCCCEEE-EEEEEETTE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceeE-EEEEEECCE
Confidence 3467899999999999999999998421100 0000111111 112234444
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeeccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~ 421 (519)
...+.||||||+++|...+..++..+|++|+|+|++... . +......++..+... ...|+|||+||+|+...
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~- 153 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPN---S---FDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD- 153 (214)
T ss_dssp EEEEEEEEC---------------CEEEEEEEEETTCHH---H---HHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC-
T ss_pred EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHH---H---HHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc-
Confidence 568999999999999998888999999999999998652 1 222222223333322 23349999999999843
Q ss_pred chhHHHH----------HHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSI----------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i----------~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
....+. .++...+.+.+++ .+++++||++|.||.++|+.+
T Consensus 154 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~el~~~l 203 (214)
T 2j1l_A 154 -KSLVNKLRRNGLEPVTYHRGQEMARSVGA----VAYLECSARLHDNVHAVFQEA 203 (214)
T ss_dssp -HHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECBTTTTBSHHHHHHHH
T ss_pred -chhhhhhcccccCcccHHHHHHHHHhcCC----CEEEEecCCCCCCHHHHHHHH
Confidence 111111 1334445555543 378999999999999998754
No 114
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=167.11 Aligned_cols=160 Identities=18% Similarity=0.094 Sum_probs=101.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
....++|+|+|.+|||||||+++|++....... ....+.........+...
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 70 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH-----------------------------EPENPEDTYERRIMVDKE 70 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGG-----------------------------TTTSCTTEEEEEEEETTE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccC-----------------------------CCCcccceEEEEEEECCE
Confidence 345689999999999999999999743221100 000111111222334445
Q ss_pred CeEEEEEeCCCCCcchh-hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccc
Q 010071 343 NYHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~-~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~ 419 (519)
...+.||||||++.+.. ....++..+|++|+|+|++... ++ .....++..+.... ...|+|||+||+|+..
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRR---SF---SKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHH---HH---HTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 56889999999988765 4556678899999999998652 22 22333333333322 1234999999999974
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...... ++...+.+..+ +.++++||++|.||.++|+.+
T Consensus 145 ~~~v~~----~~~~~~a~~~~-----~~~~e~Sa~~~~~v~~lf~~l 182 (195)
T 3cbq_A 145 SREVSL----EEGRHLAGTLS-----CKHIETSAALHHNTRELFEGA 182 (195)
T ss_dssp TCCSCH----HHHHHHHHHTT-----CEEEEEBTTTTBSHHHHHHHH
T ss_pred cCCcCH----HHHHHHHHHhC-----CEEEEEcCCCCCCHHHHHHHH
Confidence 322222 22333444444 478999999999999998754
No 115
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=8.4e-19 Score=165.75 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=102.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 68 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-----------------------------SFITTIGIDFKIKTVDINGKK 68 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC-----------------------------SSSCCCSCCEEEEEEEETTEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc-----------------------------ccCCcccceEEEEEEEECCEE
Confidence 346899999999999999999998532100 011112222222333333344
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.||||||++.|...+..++..+|++|||+|++.... + .....++..+.... ...|+|||+||+|+... .
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~ 141 (213)
T 3cph_A 69 VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT---F---TNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-V 141 (213)
T ss_dssp EEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTTTCSEEEEEEECTTCSSC-C
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCEEEEEECCCCccc-c
Confidence 789999999999999888889999999999999987521 2 22222222222222 12359999999999421 1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. .+.+..+.+.+++ +++++||++|.||.+++..+
T Consensus 142 ~~----~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 142 VT----ADQGEALAKELGI-----PFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp SC----HHHHHHHHHHHTC-----CEEECBTTTTBSSHHHHHHH
T ss_pred cC----HHHHHHHHHHcCC-----EEEEEeCCCCCCHHHHHHHH
Confidence 11 1223334444443 68999999999999998754
No 116
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=163.28 Aligned_cols=160 Identities=18% Similarity=0.153 Sum_probs=99.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|.+|+|||||+++|++..... ....+.+... .....+...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~ 67 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFIS-----------------------------EYDPNLEDTY-SSEETVDHQ 67 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCS-----------------------------CCCTTCCEEE-EEEEEETTE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCc-----------------------------ccCCCcccee-eEEEEECCE
Confidence 4567999999999999999999998532100 0011122222 112234455
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH--hCCCcEEEEEeecccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKiDlv~~ 420 (519)
...+.||||||++.|... ..++..+|++|+|+|++... +++.+..+..++...... .+.| +|||+||+|+...
T Consensus 68 ~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~ 142 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQ---SFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQY 142 (187)
T ss_dssp EEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGG
T ss_pred EEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhc
Confidence 678999999999988764 56888999999999999652 222222222222222221 2444 9999999999743
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEecc-ccCCCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA-LENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA-~tGegI~el~~~i 466 (519)
.... .+++..+.+..+ ++++++|| ++|.||.++|+.+
T Consensus 143 ~~v~----~~~~~~~~~~~~-----~~~~e~Sa~~~g~gv~~lf~~l 180 (187)
T 3c5c_A 143 RQVT----KAEGVALAGRFG-----CLFFEVSACLDFEHVQHVFHEA 180 (187)
T ss_dssp CSSC----HHHHHHHHHHHT-----CEEEECCSSSCSHHHHHHHHHH
T ss_pred CccC----HHHHHHHHHHcC-----CcEEEEeecCccccHHHHHHHH
Confidence 2222 223344444444 47899999 8999999998754
No 117
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.78 E-value=3.4e-19 Score=166.62 Aligned_cols=156 Identities=18% Similarity=0.121 Sum_probs=100.5
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..++.+||+|+|.+|||||||+++|++..... ....+ +... .....+..
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-----------------------------~~~~t-~~~~-~~~~~~~~ 64 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ-----------------------------EESPE-GGRF-KKEIVVDG 64 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC-----------------------------CCCTT-CEEE-EEEEEETT
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CcCCC-cceE-EEEEEECC
Confidence 45778999999999999999999998432100 00111 1111 12333444
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeecccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAV 418 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv 418 (519)
....+.||||||++.|. +++.+|++|+|+|++... + +.....++..+... .+. |+|||+||+|+.
T Consensus 65 ~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~ 132 (184)
T 3ihw_A 65 QSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI---S---FQTVYNYFLRLCSFRNASEV-PMVLVGTQDAIS 132 (184)
T ss_dssp EEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHH---H---HHHHHHHHHHHHTTSCGGGS-CEEEEEECTTCB
T ss_pred EEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHH---H---HHHHHHHHHHHHHhcCCCCC-CEEEEEECcccc
Confidence 55678899999999877 667799999999999752 2 22222222222222 233 499999999985
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
......+ ..+++..+.+.++ .+.++++||++|.||.++|..+
T Consensus 133 ~~~~~~v--~~~~~~~~~~~~~----~~~~~e~Sa~~~~gv~~lf~~l 174 (184)
T 3ihw_A 133 AANPRVI--DDSRARKLSTDLK----RCTYYETCATYGLNVERVFQDV 174 (184)
T ss_dssp TTBCCCS--CHHHHHHHHHHTT----TCEEEEEBTTTTBTHHHHHHHH
T ss_pred ccccccc--CHHHHHHHHHHcC----CCeEEEecCCCCCCHHHHHHHH
Confidence 3211111 1233444555544 2578999999999999998754
No 118
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.78 E-value=5e-19 Score=195.23 Aligned_cols=163 Identities=25% Similarity=0.370 Sum_probs=114.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEE--Ee---
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV--AY--- 338 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~--~~--- 338 (519)
++.++|+|+|++|+|||||+++|++........ +|+|..... ..
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~-------------------------------ggiT~~ig~~~~~~~~ 51 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREA-------------------------------GGITQHIGATEIPMDV 51 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----------------------------------CCCBTTEEEEEHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccC-------------------------------CceecccCeEEEeech
Confidence 467899999999999999999998542211000 011111000 00
Q ss_pred -------------ecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCC
Q 010071 339 -------------FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV 405 (519)
Q Consensus 339 -------------~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ 405 (519)
+......++|||||||++|...+..++..+|++|||+|++.+ ++.++.+++.++...++
T Consensus 52 ~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G--------v~~qT~e~l~~l~~~~v 123 (594)
T 1g7s_A 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYRT 123 (594)
T ss_dssp HHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTC
T ss_pred hhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCC
Confidence 112233699999999999999999999999999999999987 56788888888888888
Q ss_pred CcEEEEEeecccccc-cc------------------hhHHHHHHHHHHHHHhcCCC----------CCCceEEEeccccC
Q 010071 406 DQLIVAVNKMDAVQY-SK------------------DRFDSIKVQLGTFLRSCGFK----------DASLTWIPLSALEN 456 (519)
Q Consensus 406 ppiIVVvNKiDlv~~-~~------------------e~le~i~e~l~~~l~~~g~~----------~~~i~~IpvSA~tG 456 (519)
| +|+|+||+|+... .. ..+.+...++...|...++. ...++++++||++|
T Consensus 124 P-iIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 124 P-FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp C-EEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred e-EEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 7 9999999999742 11 11222233344444444442 23468999999999
Q ss_pred CCcccccccc
Q 010071 457 QNLVTAPDDG 466 (519)
Q Consensus 457 egI~el~~~i 466 (519)
.||.++++.+
T Consensus 203 ~GI~eLl~~I 212 (594)
T 1g7s_A 203 EGIPELLTML 212 (594)
T ss_dssp TTHHHHHHHH
T ss_pred CCchhHHHHH
Confidence 9999998754
No 119
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.5e-18 Score=162.08 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=105.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++..... ....+.+... .....+....
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~ 65 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPE-----------------------------EYVPTVFDHY-AVSVTVGGKQ 65 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCC-----------------------------SCCCSSCCCE-EEEEESSSCE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccccee-EEEEEECCEE
Confidence 356899999999999999999999532100 0001111111 1122234445
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.||||||+++|...+..++..+|++|+|+|++...+ +......++..+... ...|+|||+||+|+.....
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 139 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS------FQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 139 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHH
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCCEEEEEEChhhccccc
Confidence 789999999999999999999999999999999986521 222221233333332 2334999999999974210
Q ss_pred h--hH------HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 D--RF------DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e--~l------e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. .+ ....++...+.+..++ .+++++||++|+||.++|+.+
T Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l~~~l 187 (194)
T 2atx_A 140 TLARLNDMKEKPICVEQGQKLAKEIGA----CCYVECSALTQKGLKTVFDEA 187 (194)
T ss_dssp HHHHHTTTTCCCCCHHHHHHHHHHHTC----SCEEECCTTTCTTHHHHHHHH
T ss_pred chhhcccccCcccCHHHHHHHHHHcCC----cEEEEeeCCCCCCHHHHHHHH
Confidence 0 00 0112344445555553 368999999999999998754
No 120
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.9e-18 Score=163.96 Aligned_cols=161 Identities=13% Similarity=0.094 Sum_probs=104.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
+..++|+|+|.+|+|||||+++|++...... .....+..... ...+....
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~~-~~~~~~~~ 72 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEV-----------------------------YVPTVFENYVA-DIEVDGKQ 72 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC------------------------------------CCEEEE-EEEETTEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCc-----------------------------CCCcccceEEE-EEEECCEE
Confidence 4568999999999999999999985322100 00111111111 12334445
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||++++...+..++..+|++|+|+|++... .+......++..+... +.| +|||+||+|+....
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 145 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPD------SLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSDE 145 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHH------HHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGCH
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhccc
Confidence 68999999999999988889999999999999998652 1222323333444433 444 99999999997431
Q ss_pred chhHHHH---------HHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i---------~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+.+ .++...+....++ ..++++||++|.||.++++.+
T Consensus 146 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~el~~~l 194 (207)
T 2fv8_A 146 -HVRTELARMKQEPVRTDDGRAMAVRIQA----YDYLECSAKTKEGVREVFETA 194 (207)
T ss_dssp -HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHHHHHH
T ss_pred -cchhhhhhcccCCCCHHHHHHHHHhcCC----CEEEEeeCCCCCCHHHHHHHH
Confidence 111111 1223333334432 378999999999999998754
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=2.9e-19 Score=177.37 Aligned_cols=151 Identities=21% Similarity=0.207 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|.+|+|||||+|+|++.... ....+|+|.+.....+...+..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-------------------------------v~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR-------------------------------VGNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE-------------------------------EEECTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-------------------------------ccCCCCceEEEEEEEEEECCeEE
Confidence 47999999999999999999854211 11224666665666666677899
Q ss_pred EEEeCCCCCcchh----------hhhhcc--ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010071 347 VVLDSPGHKDFVP----------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 347 ~LiDTPG~~~f~~----------~~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
.||||||+..+.. ....++ ..+|++|+|+|++.. .....+...+...+.| +|+|+||
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~----------~~~~~l~~~l~~~~~p-vilv~NK 119 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL----------ERHLYLTSQLFELGKP-VVVALNM 119 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH----------HHHHHHHHHHTTSCSC-EEEEEEC
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc----------hhHHHHHHHHHHcCCC-EEEEEEC
Confidence 9999999988764 233344 789999999999853 2334455555666766 9999999
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccC
Q 010071 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRG 469 (519)
Q Consensus 415 iDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~ 469 (519)
+|+..... .....+.+... +| ++++++||++|.|+.++++.+...
T Consensus 120 ~Dl~~~~~--~~~~~~~l~~~---lg-----~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 120 MDIAEHRG--ISIDTEKLESL---LG-----CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHHHHHTT--CEECHHHHHHH---HC-----SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred hhcCCcCC--cHHHHHHHHHH---cC-----CCEEEEECCCCCCHHHHHHHHHhh
Confidence 99874321 11122333333 34 478999999999999999876544
No 122
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.78 E-value=1.6e-18 Score=164.32 Aligned_cols=163 Identities=13% Similarity=0.041 Sum_probs=104.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|.+|+|||||+++|++..... ....+.+.... ....+....
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~~ 56 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT-----------------------------DYIPTVFDNFS-ANVAVDGQI 56 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------------------------SCCCSSCCCEE-EEEECSSCE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------cCCCccceeEE-EEEEECCEE
Confidence 467899999999999999999998432100 00011111111 112244455
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.||||||+++|...+..++..+|++|+|+|++...+ +......++..+... ...|+|||+||+|+.....
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s------~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKAS------YENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcc
Confidence 789999999999999988889999999999999987521 222222233333332 2234999999999974311
Q ss_pred hhH----HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DRF----DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~l----e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... ....+++..+.+.+++ .+++++||++|+||.++|+.+
T Consensus 131 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l~~~l 174 (212)
T 2j0v_A 131 YLADHTNVITSTQGEELRKQIGA----AAYIECSSKTQQNVKAVFDTA 174 (212)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHcCC----ceEEEccCCCCCCHHHHHHHH
Confidence 000 0012334444445553 478999999999999999765
No 123
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.77 E-value=5.8e-19 Score=162.27 Aligned_cols=163 Identities=13% Similarity=0.054 Sum_probs=97.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|++|+|||||+++|++..... .. ..+.+.... ....+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~--~~---------------------------~~t~~~~~~-~~~~~~~~~ 55 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DY---------------------------VPTVFDNFS-ANVVVNGAT 55 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC---------------------------------------CB-CCCC-----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC--CC---------------------------CCeeeeeEE-EEEEECCEE
Confidence 456899999999999999999998532100 00 000000000 001122334
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~ 422 (519)
..+.||||||+++|...+..++..+|++|+|+|++...+ +......++..+... ...|+|+|+||+|+.....
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS------YENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcc
Confidence 567899999999999999999999999999999986521 222222233333332 2334999999999974321
Q ss_pred hh------HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DR------FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~------le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. .....++...+.+..++ .+++++||++|+||.++|+.+
T Consensus 130 ~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 130 FFIDHPGAVPITTVQGEELKKLIGA----PAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp HHHHC--CCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHcCC----CEEEEEECCCCCCHHHHHHHH
Confidence 10 00012333444444443 378999999999999998754
No 124
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.77 E-value=5.3e-19 Score=165.97 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=78.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~- 342 (519)
++.++|+|+|.+|+|||||+++|++....... ....+.+.........+...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 70 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLK---------------------------DYAMTSGVEVVVAPVTIPDTT 70 (208)
T ss_dssp EEEEEEEEC-------------------------------------------------------------CEEEECTTSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccC---------------------------CCCCccceEEEEEEEEECCcc
Confidence 45789999999999999999999843111100 00111121122222333333
Q ss_pred -CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh----CCCcEEEEEeeccc
Q 010071 343 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDA 417 (519)
Q Consensus 343 -~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~~ppiIVVvNKiDl 417 (519)
...+.||||||+++|...+..++..+|++|+|+|++... . +.....++..+.... ...|+|||+||+|+
T Consensus 71 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 144 (208)
T 2yc2_C 71 VSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSME---S---FESCKAWFELLKSARPDRERPLRAVLVANKTDL 144 (208)
T ss_dssp EEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHH---H---HHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--
T ss_pred cEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHH---H---HHHHHHHHHHHHHhhcccccCCcEEEEEECccc
Confidence 568999999999999999999999999999999998762 1 222222222222221 23459999999999
Q ss_pred cc-ccchhHHHHHHHHHHHHHhcCCCCCCceEEEecccc-CCCcccccccc
Q 010071 418 VQ-YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE-NQNLVTAPDDG 466 (519)
Q Consensus 418 v~-~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~t-GegI~el~~~i 466 (519)
.. ..... .+++..+++.++ ++++++||++ |.||.++|+.+
T Consensus 145 ~~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~gi~~l~~~i 186 (208)
T 2yc2_C 145 PPQRHQVR----LDMAQDWATTNT-----LDFFDVSANPPGKDADAPFLSI 186 (208)
T ss_dssp -----CCC----HHHHHHHHHHTT-----CEEEECCC-------CHHHHHH
T ss_pred chhhccCC----HHHHHHHHHHcC-----CEEEEeccCCCCcCHHHHHHHH
Confidence 74 21111 233444555554 4789999999 99999998755
No 125
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.77 E-value=2.2e-18 Score=165.10 Aligned_cols=165 Identities=14% Similarity=0.059 Sum_probs=105.7
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
..++.++|+|+|.+|+|||||+++|++..... ....+.+... .....+..
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~ 72 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPE-----------------------------TYVPTVFENY-TACLETEE 72 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCSEEEE-EEEEEC--
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------CcCCeeeeeE-EEEEEECC
Confidence 34567999999999999999999998532110 0011122222 12233455
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~ 420 (519)
....+.||||||+++|...+..+++.+|++|+|+|++...+ +......++..+... ...|+|||+||+|+...
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET------VDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHH------HHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGC
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHH------HHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 66789999999999999999999999999999999997622 222122333333332 23459999999999742
Q ss_pred cch--------hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCC-cccccccc
Q 010071 421 SKD--------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVTAPDDG 466 (519)
Q Consensus 421 ~~e--------~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGeg-I~el~~~i 466 (519)
... ......++...+.+.+++ .++++|||++|.| |.++|..+
T Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SA~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 147 LSTLMELSHQKQAPISYEQGCAIAKQLGA----EIYLEGSAFTSEKSIHSIFRTA 197 (214)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHHHHHHHHH
T ss_pred hhhhhhhcccccCccCHHHHHHHHHHcCC----CEEEEeccCCCcccHHHHHHHH
Confidence 100 001112344455555553 2789999999998 99998754
No 126
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.77 E-value=1.5e-18 Score=163.85 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=105.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|.+|+|||||+++|++...... .....+.... ....+.....
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~-~~~~~~~~~~ 73 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV-----------------------------YVPTVFENYI-ADIEVDGKQV 73 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS-----------------------------CCCSSCCCCE-EEEEETTEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc-----------------------------cCCcccceEE-EEEEECCEEE
Confidence 468999999999999999999985322100 0001111111 1122344456
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccccc
Q 010071 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~~ 422 (519)
.+.||||||+++|...+..++..+|++|+|+|++... .+......+...+... +.| +|||+||+|+....
T Consensus 74 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~- 145 (201)
T 2gco_A 74 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD------SLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDE- 145 (201)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCH-
T ss_pred EEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCc-
Confidence 8999999999999998888999999999999998652 1222323334444433 444 99999999997431
Q ss_pred hhHHH---------HHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 423 DRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 423 e~le~---------i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+. ..++...+.+..++ .+++++||++|.||.++++.+
T Consensus 146 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~l~~~i 194 (201)
T 2gco_A 146 HTRRELAKMKQEPVRSEEGRDMANRISA----FGYLECSAKTKEGVREVFEMA 194 (201)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHHHHHH
T ss_pred cchhhhcccccCcCCHHHHHHHHHhCCC----cEEEEeeCCCCCCHHHHHHHH
Confidence 11111 12234444555543 378999999999999998754
No 127
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.77 E-value=9.6e-19 Score=173.75 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=105.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|++|+|||||+|+|++.... ....+|+|.......+...+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-------------------------------~~~~pg~tv~~~~~~~~~~~ 51 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-------------------------------VANWPGVTVEKKEGVFTYKG 51 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE-------------------------------EEECTTSCCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc-------------------------------ccCCCCceEEEEEEEEEECC
Confidence 45689999999999999999999853221 11124666666666666677
Q ss_pred eEEEEEeCCCCCcchhh------hhhcc--ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010071 344 YHVVVLDSPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~------~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
..+.||||||+..+... ...++ ..+|++|+|+|++.. .....+...+...+.| +|+|+||+
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~----------~~~~~~~~~l~~~~~p-vilv~NK~ 120 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP----------EQSLYLLLEILEMEKK-VILAMTAI 120 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC----------HHHHHHHHHHHTTTCC-EEEEEECH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch----------hhHHHHHHHHHhcCCC-EEEEEECc
Confidence 89999999999877642 12333 579999999999964 1122344445556766 99999999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
|+........ .+..+.+.+| ++++++||++|.|+.++++.+.
T Consensus 121 Dl~~~~~i~~-----~~~~l~~~lg-----~~vi~~SA~~g~gi~el~~~i~ 162 (258)
T 3a1s_A 121 DEAKKTGMKI-----DRYELQKHLG-----IPVVFTSSVTGEGLEELKEKIV 162 (258)
T ss_dssp HHHHHTTCCB-----CHHHHHHHHC-----SCEEECCTTTCTTHHHHHHHHH
T ss_pred CCCCccchHH-----HHHHHHHHcC-----CCEEEEEeeCCcCHHHHHHHHH
Confidence 9874322111 1222333344 4789999999999999998653
No 128
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.77 E-value=4e-18 Score=160.07 Aligned_cols=164 Identities=16% Similarity=0.076 Sum_probs=101.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|.+|+|||||+++|++.... . ....+.+... .....+...
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~--~---------------------------~~~~t~~~~~-~~~~~~~~~ 66 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYP--T---------------------------EYIPTAFDNF-SAVVSVDGR 66 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-------------------------------------CCSSEEE-EEEEEETTE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC--C---------------------------CCCCccccee-EEEEEECCE
Confidence 456789999999999999999999843210 0 0001111111 112223334
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeeccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~ 421 (519)
...+.||||||+++|...+..++..+|++|+|+|++...+ +......++..+.. ....|+|||+||+|+....
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 140 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSS------FQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140 (201)
T ss_dssp EEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCH
T ss_pred EEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhch
Confidence 4678899999999999888889999999999999987521 22222122322332 2234599999999997421
Q ss_pred ch--------hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KD--------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e--------~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. ......+....+.+..++ ++++++||++|.||.++|+.+
T Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l~~~l 189 (201)
T 2q3h_A 141 KVLIELDKCKEKPVPEEAAKLLAEEIKA----ASYIECSALTQKNLKEVFDAA 189 (201)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHHHHHHH
T ss_pred hhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEEecCCCCCHHHHHHHH
Confidence 10 000112333444444442 378999999999999998754
No 129
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=9.2e-19 Score=162.27 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=100.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|++|||||||+++|++.... ....++++.......+...
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~ 52 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVY-------------------------------IGNWPGVTVEKKEGEFEYN 52 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEE-------------------------------EEECTTSCCEEEEEEEEET
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcc-------------------------------ccCCCCeeccceEEEEEeC
Confidence 456789999999999999999999853210 0111334433334444556
Q ss_pred CeEEEEEeCCCCCcchh------hhhhccc--cCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010071 343 NYHVVVLDSPGHKDFVP------NMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~------~~~~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
+..+.||||||+..+.. ....++. .+|++++|+|+... .....++..+...+.| +|+|+||
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~p-iilv~nK 121 (188)
T 2wjg_A 53 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERNLYLTLQLMEMGAN-LLLALNK 121 (188)
T ss_dssp TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH----------HHHHHHHHHHHTTTCC-EEEEEEC
T ss_pred CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH----------HHHHHHHHHHHhcCCC-EEEEEEh
Confidence 78999999999988742 2333343 49999999999842 1223333444445555 9999999
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 415 iDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|+..... +. ..+..+.+.++ ++++++||++|.|+.++|+.+
T Consensus 122 ~Dl~~~~~--~~---~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~~i 163 (188)
T 2wjg_A 122 MDLAKSLG--IE---IDVDKLEKILG-----VKVVPLSAAKKMGIEELKKAI 163 (188)
T ss_dssp HHHHHHTT--CC---CCHHHHHHHHT-----SCEEECBGGGTBSHHHHHHHH
T ss_pred hhcccccc--ch---HHHHHHHHHhC-----CCeEEEEecCCCCHHHHHHHH
Confidence 99874211 11 11222333334 478999999999999998754
No 130
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.77 E-value=8.3e-19 Score=174.63 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=106.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
|+.++|+|+|++|+|||||+|+|++... .....+++|.......+...+
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 49 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQ-------------------------------HVGNWPGVTVEKKEGIMEYRE 49 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCE-------------------------------EEEECTTSSCEEEEEEEEETT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeEEEeeEEEEEECC
Confidence 4578999999999999999999985422 111234556665566666778
Q ss_pred eEEEEEeCCCCCcchh------hhhhcc--ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010071 344 YHVVVLDSPGHKDFVP------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~------~~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
..+.||||||+..|.. ....++ ..+|++|+|+|++.. .....+...+...+..|+|+|+||+
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~----------~~~~~~~~~~~~~~~~p~ilv~NK~ 119 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL----------MRNLFLTLELFEMEVKNIILVLNKF 119 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH----------HHHHHHHHHHHHTTCCSEEEEEECH
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc----------hhhHHHHHHHHhcCCCCEEEEEECh
Confidence 8899999999988765 233333 579999999999964 2233344444555623499999999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
|+........+ .+.+.. .+| ++++|+||++|.|+.++++.+.
T Consensus 120 Dl~~~~~~~~~--~~~l~~---~lg-----~~~~~~Sa~~g~gi~~l~~~i~ 161 (271)
T 3k53_A 120 DLLKKKGAKID--IKKMRK---ELG-----VPVIPTNAKKGEGVEELKRMIA 161 (271)
T ss_dssp HHHHHHTCCCC--HHHHHH---HHS-----SCEEECBGGGTBTHHHHHHHHH
T ss_pred hcCcccccHHH--HHHHHH---HcC-----CcEEEEEeCCCCCHHHHHHHHH
Confidence 98742211111 233333 334 4789999999999999987653
No 131
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=3.4e-18 Score=165.01 Aligned_cols=163 Identities=16% Similarity=0.148 Sum_probs=101.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|||||||+++|++.... .....+.|.......+....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 75 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-------------------------------VQSYSFTTKNLYVGHFDHKL 75 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-------------------------------EECC-----CEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCcceeeeeeeeecCC
Confidence 45689999999999999999999853211 00112333344444445567
Q ss_pred eEEEEEeCCCCC------cc---hhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEe
Q 010071 344 YHVVVLDSPGHK------DF---VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVN 413 (519)
Q Consensus 344 ~~l~LiDTPG~~------~f---~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvN 413 (519)
..+.||||||+. .. ...+...+..+|++|||+|++...+ +. . .....++..+... ...|+|+|+|
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~-~-~~~~~~~~~l~~~~~~~piilv~n 150 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG---LT-I-KEQINLFYSIKSVFSNKSIVIGFN 150 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS---SC-H-HHHHHHHHHHHTCC-CCCEEEEEE
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC---cc-h-HHHHHHHHHHHHhhcCCcEEEEEe
Confidence 899999999983 31 1122334677899999999987632 21 1 1223334444443 2334999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+|+.... .......+.+..+....+ ..++++++||++|+||.++|+.+
T Consensus 151 K~Dl~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~l~~~l 199 (228)
T 2qu8_A 151 KIDKCNMD-SLSIDNKLLIKQILDNVK---NPIKFSSFSTLTGVGVEQAKITA 199 (228)
T ss_dssp CGGGCC---CCCHHHHHHHHHHHHHCC---SCEEEEECCTTTCTTHHHHHHHH
T ss_pred CcccCCch-hhHHHHHHHHHHHHHhcC---CCceEEEEecccCCCHHHHHHHH
Confidence 99997432 111223334555554443 12588999999999999998765
No 132
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.76 E-value=4.1e-18 Score=158.24 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=104.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|.+|+|||||+++|++..... ...++.+.... ....+...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~ 53 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPE-----------------------------NYVPTVFENYT-ASFEIDTQ 53 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCSEEEEE-EEEECSSC
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceeEE-EEEEECCE
Confidence 3457899999999999999999998532100 00111122211 12234455
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeeccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~ 421 (519)
...+.||||||++.|...+..++..+|++|+|+|++... + +......+...+.. ....|+|||+||+|+....
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 127 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---T---LDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---H---HHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHH---H---HHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcch
Confidence 678999999999999988888999999999999998652 1 22221222222332 2234599999999997421
Q ss_pred chhHH---------HHHHHHHHHHHhcCCCCCCceEEEeccc-cCCCcccccccc
Q 010071 422 KDRFD---------SIKVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le---------~i~e~l~~~l~~~g~~~~~i~~IpvSA~-tGegI~el~~~i 466 (519)
.... ...++...+.+.++ .++++++||+ +|.||.++|+.+
T Consensus 128 -~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~gi~~l~~~i 177 (184)
T 1m7b_A 128 -STLVELSNHRQTPVSYDQGANMAKQIG----AATYIECSALQSENSVRDIFHVA 177 (184)
T ss_dssp -HHHHHHHTTTCCCCCHHHHHHHHHHHT----CSEEEECBTTTBHHHHHHHHHHH
T ss_pred -hhHhhhhhcccCCCCHHHHHHHHHHcC----CcEEEEeeecCCCcCHHHHHHHH
Confidence 1000 11233444555544 2478999999 699999998754
No 133
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.76 E-value=1e-19 Score=171.50 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=97.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
....++|+|+|.+|+|||||+++|++..... ......+.+.......+...
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 80 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTE-----------------------------SYISTIGVDFKIRTIELDGK 80 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCC-----------------------------HHHHHHCCSEEEEEEEETTE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CcCCcccceEEEEEEEECCE
Confidence 3457899999999999999999998422110 00111222233333334444
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--CCcEEEEEeecccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--~ppiIVVvNKiDlv~~ 420 (519)
...+.||||||++.+...+..++..+|++|||+|++... . +... ..++..+.... ..|+|||+||+|+...
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---S---FNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSH---H---HHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHH---H---HHHH-HHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 578999999999999999999999999999999999762 1 2222 22333333321 2359999999999743
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.....+ ....+...++ ++++++||++|.||.++|..+
T Consensus 154 ~~v~~~----~~~~~~~~~~-----~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 154 KVVDYT----TAKEFADSLG-----IPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp CCCCSC----C-CHHHHTTT-----CCBCCCCC---HHHHHHHHHH
T ss_pred ccCCHH----HHHHHHHHcC-----CeEEEEECCCCCCHHHHHHHH
Confidence 221111 1223333344 467999999999999998755
No 134
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.76 E-value=2.3e-18 Score=158.13 Aligned_cols=157 Identities=17% Similarity=0.148 Sum_probs=96.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
++.++|+|+|.+|+|||||+++|++..... ..++.+... .....+....
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~------------------------------~~~t~~~~~-~~~~~~~~~~ 53 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV------------------------------LEKTESEQY-KKEMLVDGQT 53 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC------------------------------CSSCSSSEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC------------------------------cCCCcceeE-EEEEEECCEE
Confidence 567899999999999999999998532210 011112111 1222344445
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||+++ ..+++.+|++|+|+|++... ++..+..+..++.. +... ...|+|||+||+|+....
T Consensus 54 ~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~---s~~~~~~~~~~i~~-~~~~~~~~~piilv~nK~Dl~~~~ 124 (178)
T 2iwr_A 54 HLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDEN---SFQAVSRLHGQLSS-LRGEGRGGLALALVGTQDRISASS 124 (178)
T ss_dssp EEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHH---HHHHHHHHHHHHHH-HHCSSSCCCEEEEEEECTTCBTTB
T ss_pred EEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHH---HHHHHHHHHHHHHH-HHhcCCCCCCEEEEEECccccccc
Confidence 6789999999987 34667799999999999762 22222111112221 2211 233599999999985211
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.... ..+++..+.+..+ +++++++||++|.||.++|+.+
T Consensus 125 ~~~v--~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~lf~~l 163 (178)
T 2iwr_A 125 PRVV--GDARARALXADMK----RCSYYETXATYGLNVDRVFQEV 163 (178)
T ss_dssp CCCS--CHHHHHHHHHHHS----SEEEEEEBTTTTBTHHHHHHHH
T ss_pred cCcC--CHHHHHHHHHhhc----CCeEEEEeccccCCHHHHHHHH
Confidence 1111 1222333333332 3578999999999999998754
No 135
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.76 E-value=9.7e-19 Score=179.64 Aligned_cols=158 Identities=18% Similarity=0.114 Sum_probs=104.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|.+|+|||||+++|++.... ...+ |+......+...
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~------------------------------~~~p----T~~~~~~~~~~~ 207 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIV------------------------------TTIP----TIGFNVETVEYK 207 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCE------------------------------EEEE----ETTEEEEEEEET
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCC------------------------------Cccc----ccceEEEEEecC
Confidence 346789999999999999999999842210 0001 222223345557
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~ 420 (519)
+..+.||||||++.|...+..++..+|++|||+|++... .+.....++..++... ...|+|||+||+|+...
T Consensus 208 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~------s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE------RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSS------SHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchH------HHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 789999999999999999999999999999999998652 2334444555554433 23349999999999843
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...+++ ...+.........++++++||++|.||.++|+.+
T Consensus 282 --~~~~~i----~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 282 --MNAAEI----TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp --CCHHHH----HHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred --cCHHHH----HHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 222223 2333233333456789999999999999998754
No 136
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.76 E-value=8.6e-19 Score=188.90 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=109.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|.+|||||||+++|++..... ..++.+ .....+...
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~------------------------------~~~T~~----~~~~~~~~~ 364 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT------------------------------TIPTVG----FNVETVTYK 364 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC------------------------------CCCCSS----EEEEEEESS
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC------------------------------cCCccc----eeEEEEEeC
Confidence 3567999999999999999999998532100 011122 223345567
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeeccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~ 419 (519)
+..+.||||||++.|...+..++..+|++|+|+|++... .+.....++..++.. .++ |+|||+||+|+..
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~------s~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD------RIDEARQELHRIINDREMRDA-IILIFANKQDLPD 437 (497)
T ss_dssp SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGG------GHHHHHHHHHHHHTSGGGTTC-EEEEEEECCSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchh------HHHHHHHHHHHHhhhhhcCCC-cEEEEEECCCCCc
Confidence 789999999999999999999999999999999999752 233444444444433 244 4999999999974
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. ...+ ++...+.........++++++||++|+||.++|+.+
T Consensus 438 ~--~~~~----~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 478 (497)
T 3lvq_E 438 A--MKPH----EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 478 (497)
T ss_dssp C--CCHH----HHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred C--CCHH----HHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 2 2222 222232222223345689999999999999998755
No 137
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2.5e-18 Score=165.77 Aligned_cols=160 Identities=17% Similarity=0.077 Sum_probs=98.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|||||||+++|++....+.... ...|.+.......+....
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~----------------------------~~~g~d~~~~~i~~~~~~ 86 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC----------------------------EVLGEDTYERTLMVDGES 86 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-------------------------------CCTTEEEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC----------------------------CccceeeEEEEEEECCee
Confidence 3468999999999999999999984322111100 011222222223344445
Q ss_pred eEEEEEeCCCCCc-chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHH--HhCCCcEEEEEeecccccc
Q 010071 344 YHVVVLDSPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 344 ~~l~LiDTPG~~~-f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~--~~~~ppiIVVvNKiDlv~~ 420 (519)
..+.+|||+|++. +......+++.++++|+|+|++... + +.....+...+.. .....|+|||+||+|+...
T Consensus 87 ~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~---s---f~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~ 160 (211)
T 2g3y_A 87 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA---S---FEKASELRIQLRRARQTEDIPIILVGNKSDLVRC 160 (211)
T ss_dssp EEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHH---H---HHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG
T ss_pred eEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHH---H---HHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcC
Confidence 6788999999887 4444455678899999999998652 2 2222222222221 1122349999999999742
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.....+ +...+...++ ++|+++||++|+||.++|+.+
T Consensus 161 r~v~~~----e~~~~a~~~~-----~~~~e~SAk~g~~v~elf~~l 197 (211)
T 2g3y_A 161 REVSVS----EGRACAVVFD-----CKFIETSAAVQHNVKELFEGI 197 (211)
T ss_dssp CCSCHH----HHHHHHHHHT-----CEEEECBTTTTBSHHHHHHHH
T ss_pred ceEeHH----HHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHHH
Confidence 221111 2222333333 478999999999999999754
No 138
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.75 E-value=4.2e-18 Score=162.41 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=104.8
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
....++|+|+|.+|+|||||+++|++..... ....+.+.... ....+...
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~ 74 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPE-----------------------------NYVPTVFENYT-ASFEIDTQ 74 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCSEEEEE-EEEESSSS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CcCCccceeEE-EEEEECCE
Confidence 3467899999999999999999998532100 00111122221 12234455
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeeccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~ 421 (519)
...+.||||||+++|...+..++..+|++|+|+|++... . +......++..+.. ....|+|||+||+|+....
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~---s---~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 148 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---T---LDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---H---HHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHHHCCCCCEEEEEechhhccch
Confidence 678999999999999988888999999999999999652 1 22221222222332 2234599999999997421
Q ss_pred chhHH---------HHHHHHHHHHHhcCCCCCCceEEEeccc-cCCCcccccccc
Q 010071 422 KDRFD---------SIKVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le---------~i~e~l~~~l~~~g~~~~~i~~IpvSA~-tGegI~el~~~i 466 (519)
.... ...++...+.+.++ .+.++++||+ +|.||.++|+.+
T Consensus 149 -~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~gv~~lf~~l 198 (205)
T 1gwn_A 149 -STLVELSNHRQTPVSYDQGANMAKQIG----AATYIECSALQSENSVRDIFHVA 198 (205)
T ss_dssp -HHHHHHHTTTCCCCCHHHHHHHHHHHT----CSEEEECCTTTCHHHHHHHHHHH
T ss_pred -hhhhhhcccccCCCCHHHHHHHHHHcC----CCEEEEeeeccCCcCHHHHHHHH
Confidence 0000 11233444555544 2478999999 689999998754
No 139
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.75 E-value=1.2e-18 Score=161.05 Aligned_cols=147 Identities=17% Similarity=0.153 Sum_probs=92.9
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
+..+|+|+|.+|+|||||+++|++....... ..++++.+.....+...+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~ 52 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT------------------------------DIAGTTRDVLREHIHIDGM 52 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC------------------------------SSTTCCCSCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceee------------------------------CCCCceeceeeEEEEECCe
Confidence 3578999999999999999999854221100 1122222222222334566
Q ss_pred EEEEEeCCCCCcchh--------hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh---CCCcEEEEEe
Q 010071 345 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVN 413 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~~ppiIVVvN 413 (519)
.+.||||||++++.. ....+++.+|++|+|+|++...++ + . ..++..+... ++| +|+|+|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~---~-~----~~~~~~~~~~~~~~~p-~ilv~N 123 (172)
T 2gj8_A 53 PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAV---D-P----AEIWPEFIARLPAKLP-ITVVRN 123 (172)
T ss_dssp EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCC---S-H----HHHCHHHHHHSCTTCC-EEEEEE
T ss_pred EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH---H-H----HHHHHHHHHhcccCCC-EEEEEE
Confidence 799999999876421 123467889999999999876332 1 1 1122222222 344 999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+|+....... .+. ...+++++||++|+||.++|+.+
T Consensus 124 K~Dl~~~~~~~-----------~~~-----~~~~~~~~SA~~g~gv~~l~~~l 160 (172)
T 2gj8_A 124 KADITGETLGM-----------SEV-----NGHALIRLSARTGEGVDVLRNHL 160 (172)
T ss_dssp CHHHHCCCCEE-----------EEE-----TTEEEEECCTTTCTTHHHHHHHH
T ss_pred CccCCcchhhh-----------hhc-----cCCceEEEeCCCCCCHHHHHHHH
Confidence 99986321110 000 13578999999999999998754
No 140
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.75 E-value=4.8e-18 Score=172.67 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=108.9
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-CCCe
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNY 344 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~-~~~~ 344 (519)
.+||+|+|.+|+|||||+++|++...... ....+.|+......+. ....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~------------------------------~~~~~~Ti~~~~~~~~~~~~~ 52 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFD------------------------------TRRLGATIDVEHSHLRFLGNM 52 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGG------------------------------GGGCCCCCSEEEEEEEETTTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc------------------------------ccCcCCccceEEEEEEeCCce
Confidence 57899999999999999999985321110 0112333333322222 2478
Q ss_pred EEEEEeCCCCCcc-----hhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010071 345 HVVVLDSPGHKDF-----VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 345 ~l~LiDTPG~~~f-----~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
.+.||||||+++| ...+..+++.+|++|+|+|++...+ +..+..+..++..+.......|+++|+||+|+..
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s---~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV---LKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCH---HHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhh---HHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 9999999999988 5556667789999999999997632 2222222222222222222345999999999984
Q ss_pred c--cchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 420 Y--SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 420 ~--~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
. ..+.++...+++..+.+.+|+. .++++++||++ .|+.+++..+.
T Consensus 130 ~~~r~~~~~v~~~~~~~~~~~~g~~--~~~~~~tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 130 LDKREELFQIMMKNLSETSSEFGFP--NLIGFPTSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCC--SCEEEECCTTS-SHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCCC--CeEEEEeeecC-ChHHHHHHHHH
Confidence 1 1111224556777777777753 36899999999 88888887643
No 141
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=4.3e-18 Score=181.26 Aligned_cols=149 Identities=26% Similarity=0.279 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.+|+|||.+|||||||+|+|++....+ ....+|+|.+.....+.+.+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------------------------VEDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------------------CCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce------------------------------ecCCCCCccceeeEEEEECCeEE
Confidence 479999999999999999999543211 12236777766666677788899
Q ss_pred EEEeCCCCCc---------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010071 347 VVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 347 ~LiDTPG~~~---------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
.||||||++. +...+..++..+|++|+|+|+..+ +.....++..+++..+.| +|+|+||+|+
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~--------~~~~d~~i~~~l~~~~~p-~ilv~NK~D~ 122 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRG--------ITKEDESLADFLRKSTVD-TILVANKAEN 122 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTC--------CCHHHHHHHHHHHHHTCC-EEEEEESCCS
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 9999999765 234456678999999999999876 233445566666666766 9999999998
Q ss_pred ccccchhHHHHHHHH-HHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 418 VQYSKDRFDSIKVQL-GTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 418 v~~~~e~le~i~e~l-~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... . ...+ ..+ ..+|+. .++++||++|.|+.++++.+
T Consensus 123 ~~~--~-----~~~~~~~~-~~lg~~----~~~~iSA~~g~gv~~L~~~i 160 (439)
T 1mky_A 123 LRE--F-----EREVKPEL-YSLGFG----EPIPVSAEHNINLDTMLETI 160 (439)
T ss_dssp HHH--H-----HHHTHHHH-GGGSSC----SCEECBTTTTBSHHHHHHHH
T ss_pred ccc--c-----HHHHHHHH-HhcCCC----CEEEEeccCCCCHHHHHHHH
Confidence 631 0 1111 222 245543 35999999999999998765
No 142
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.74 E-value=6.7e-18 Score=159.03 Aligned_cols=159 Identities=18% Similarity=0.127 Sum_probs=94.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
+..++|+|+|.+|||||||+++|++....+.... ...|.+.......++...
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 55 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX----------------------------EVLGEDTYERTLMVDGES 55 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC--------------------------------GGGCTTEEEEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc----------------------------cccceeEEEEEEEECCeE
Confidence 3468999999999999999999985322111100 001122212223344445
Q ss_pred eEEEEEeCCCCCc-chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH---hCCCcEEEEEeeccccc
Q 010071 344 YHVVVLDSPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 344 ~~l~LiDTPG~~~-f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~~ppiIVVvNKiDlv~ 419 (519)
..+.+|||+|++. +......+++.+|++|+|+|++... ++ .....+...+... .+.| +|+|+||+|+..
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~---~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~ 128 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA---SF---EKASELRIQLRRARQTEDIP-IILVGNKSDLVR 128 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHH---HH---HHHHHHHHHHHHHTTTSCCC-EEEEEECTTCGG
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhhCCCCCe-EEEEEechhhhc
Confidence 6788999999765 3333445667799999999998652 22 2222222222221 2344 999999999874
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...... +....+....+ ++|+++||++|.||.++|+.+
T Consensus 129 ~r~v~~----~~~~~~a~~~~-----~~~~e~SA~~g~~v~~lf~~l 166 (192)
T 2cjw_A 129 XREVSV----SEGRAXAVVFD-----XKFIETSAAVQHNVKELFEGI 166 (192)
T ss_dssp GCCSCH----HHHHHHHHHTT-----CEEEECBTTTTBSHHHHHHHH
T ss_pred cccccH----HHHHHHHHHhC-----CceEEeccccCCCHHHHHHHH
Confidence 221111 12222223333 478999999999999999765
No 143
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.74 E-value=2.3e-18 Score=172.59 Aligned_cols=150 Identities=18% Similarity=0.183 Sum_probs=100.8
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|++|+|||||+|+|++.... ....+|+|+......+.. +..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-------------------------------v~~~pg~tv~~~~~~~~~-~~~ 50 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-------------------------------VGNWPGVTVERKSGLVKK-NKD 50 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-------------------------------CCSSSCCCCSCEEEECTT-CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-------------------------------ccCCCCCcEEEEEEEEec-CCe
Confidence 478999999999999999999853210 111235555544455555 778
Q ss_pred EEEEeCCCCCcchh------hhhhccc--cCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010071 346 VVVLDSPGHKDFVP------NMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 346 l~LiDTPG~~~f~~------~~~~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
+.||||||+..|.. ....++. .+|++|+|+|++.. .....+...+...+.| +|+|+||+|+
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~----------e~~~~~~~~l~~~~~p-~ilv~NK~Dl 119 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL----------ERNLYLTTQLIETGIP-VTIALNMIDV 119 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH----------HHHHHHHHHHHHTCSC-EEEEEECHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch----------HhHHHHHHHHHhcCCC-EEEEEEChhh
Confidence 99999999988752 2333443 59999999999853 1122333444456766 9999999998
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccccc
Q 010071 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIR 468 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~ 468 (519)
..... +....+.+. +.++ ++++++||++|.||.++|..+..
T Consensus 120 ~~~~~--~~~~~~~l~---~~lg-----~~vi~~SA~~g~gi~el~~~i~~ 160 (272)
T 3b1v_A 120 LDGQG--KKINVDKLS---YHLG-----VPVVATSALKQTGVDQVVKKAAH 160 (272)
T ss_dssp HHHTT--CCCCHHHHH---HHHT-----SCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCcCC--cHHHHHHHH---HHcC-----CCEEEEEccCCCCHHHHHHHHHH
Confidence 74211 111122222 2334 47899999999999999986543
No 144
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.74 E-value=3.4e-18 Score=186.42 Aligned_cols=178 Identities=26% Similarity=0.346 Sum_probs=117.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|++|+|||||+++|++..+.+...... ...... .....+....++.+|+|+......+.+.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v--------~~~~~~-~~~~~D~~~~E~~rGiTi~~~~~~~~~~~ 81 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTV--------KGRGSN-QHAKSDWMEMEKQRGISITTSVMQFPYHD 81 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------CCTTEEEEEETT
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCcccccee--------ecCccc-cceeeccchhcccCCcceeeeEEEEEECC
Confidence 457899999999999999999999765544221100 000000 01234555667788888877777788889
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..++|||||||.+|...+..++..+|++|+|+|+..+ ...++.+++.++...++| +|+|+||+|+.....
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g--------~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~- 151 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG--------VEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP- 151 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC--------SCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH-
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc--------chHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH-
Confidence 9999999999999999999999999999999999987 456788888888877887 899999999975322
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~ 465 (519)
.++.+++...+ +.....+.+..+||+++.|+.+++..
T Consensus 152 --~~~~~~i~~~l---~~~~~~~~~pi~sa~~~~Gv~dl~~~ 188 (529)
T 2h5e_A 152 --MELLDEVENEL---KIGCAPITWPIGCGKLFKGVYHLYKD 188 (529)
T ss_dssp --HHHHHHHHHHH---CCEEEESEEEESCGGGCCEEEETTTT
T ss_pred --HHHHHHHHHHh---CCCccceecceecccCcceeeehhhh
Confidence 23445555544 32111123344799999999998764
No 145
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.74 E-value=8.7e-19 Score=186.47 Aligned_cols=150 Identities=23% Similarity=0.277 Sum_probs=99.9
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|.+|||||||+|+|++....+ ....+|+|.+.....+.+.+..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~ 52 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEWLNYD 52 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------CEEEECTTCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCCccceEEEEEEECCce
Confidence 4689999999999999999998543211 1234678888777788888899
Q ss_pred EEEEeCCCCC--------cchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010071 346 VVVLDSPGHK--------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 346 l~LiDTPG~~--------~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
+.||||||+. .+...+..++..+|++|||+|+..+ +.....++..+++..+.| +|+|+||+|+
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~--------~~~~d~~~~~~l~~~~~p-vilv~NK~D~ 123 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG--------VTAADEEVAKILYRTKKP-VVLAVNKLDN 123 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHTTCCSC-EEEEEECCCC
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 9999999986 4666677788999999999999987 334556666667666666 9999999998
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 418 v~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
..... .+..+. .+|+. .++++||++|.|+.++++.+.
T Consensus 124 ~~~~~--------~~~~~~-~lg~~----~~~~iSA~~g~gv~~L~~~i~ 160 (436)
T 2hjg_A 124 TEMRA--------NIYDFY-SLGFG----EPYPISGTHGLGLGDLLDAVA 160 (436)
T ss_dssp -------------CCCSSG-GGSSC----CCEECBTTTTBTHHHHHHHHH
T ss_pred ccchh--------hHHHHH-HcCCC----CeEEEeCcCCCChHHHHHHHH
Confidence 74211 111111 33442 459999999999999987653
No 146
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.74 E-value=4e-18 Score=191.94 Aligned_cols=134 Identities=34% Similarity=0.411 Sum_probs=96.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC--
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~-- 341 (519)
.+.+||+||||.++|||||+.+|+...+.+.+..- ..+ -..++|....|+++|+|+......+.+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~--------v~~-----~~~~~D~~~~E~eRGITI~s~~~s~~~~~ 77 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGE--------VHD-----GAATTDWMVQEQERGITITSAAVTTFWKG 77 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------------------CCEEEEEECC
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCce--------ecC-----CCccCCChHHHHHcCCeEEeeeEEEEecc
Confidence 46789999999999999999999977765432210 001 124588889999999999776665544
Q ss_pred -----CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010071 342 -----KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 342 -----~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
+++.|+|||||||.+|..++.+.++.+|++|+|||+..| ++.+++.+++++...++| .|+++||||
T Consensus 78 ~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveG--------V~~qT~~v~~~a~~~~lp-~i~~iNKiD 148 (709)
T 4fn5_A 78 SRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSG--------VEPQSETVWRQANKYGVP-RIVYVNKMD 148 (709)
T ss_dssp TTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHHTCC-EEEEEECSS
T ss_pred CcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCC--------CchhHHHHHHHHHHcCCC-eEEEEcccc
Confidence 368999999999999999999999999999999999998 789999999999999999 799999999
Q ss_pred ccc
Q 010071 417 AVQ 419 (519)
Q Consensus 417 lv~ 419 (519)
...
T Consensus 149 r~~ 151 (709)
T 4fn5_A 149 RQG 151 (709)
T ss_dssp STT
T ss_pred ccC
Confidence 864
No 147
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.73 E-value=8.3e-18 Score=170.64 Aligned_cols=157 Identities=25% Similarity=0.236 Sum_probs=105.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+..+|+|+|++|||||||+|+|++....+.... +++|.......+....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~------------------------------~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRK------------------------------AQTTRHRIVGIHTEGA 55 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCC------------------------------SSCCSSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCC------------------------------CCcceeeEEEEEEECC
Confidence 3456799999999999999999996543221110 1111111111234467
Q ss_pred eEEEEEeCCCCC---------cchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010071 344 YHVVVLDSPGHK---------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 344 ~~l~LiDTPG~~---------~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
..++||||||+. .+......++..+|++++|+|+.. +.....+++..+...+.| +|+|+||
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---------~~~~~~~i~~~l~~~~~P-~ilvlNK 125 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---------WTPDDEMVLNKLREGKAP-VILAVNK 125 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---------CCHHHHHHHHHHHSSSSC-EEEEEES
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---------CCHHHHHHHHHHHhcCCC-EEEEEEC
Confidence 799999999987 344555678889999999999974 123455666666655666 8999999
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccccc
Q 010071 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIR 468 (519)
Q Consensus 415 iDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~ 468 (519)
+|+... .. .+.+.+..+.+.+++ ..++|+||++|.|+.++++.+..
T Consensus 126 ~D~~~~-~~---~~~~~l~~l~~~~~~----~~~i~iSA~~g~~v~~l~~~i~~ 171 (301)
T 1ega_A 126 VDNVQE-KA---DLLPHLQFLASQMNF----LDIVPISAETGLNVDTIAAIVRK 171 (301)
T ss_dssp TTTCCC-HH---HHHHHHHHHHTTSCC----SEEEECCTTTTTTHHHHHHHHHT
T ss_pred cccCcc-HH---HHHHHHHHHHHhcCc----CceEEEECCCCCCHHHHHHHHHH
Confidence 999741 22 233444444444443 26799999999999999876543
No 148
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.56 E-value=4.6e-19 Score=167.41 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=100.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+++|++..... . ...+.+... .....+....
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~---------------------------~~~t~~~~~-~~~~~~~~~~ 77 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG--E---------------------------YIPTVFDNY-SANVMVDGKP 77 (204)
Confidence 567899999999999999999998432100 0 000000000 0111223345
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.||||||+++|...+..++..+|++|+|+|++...+ +. .....++..+... +. |+|||+||+|+....
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~~l~~~~~~~-piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 78 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNT-PIILVGTKLDLRDDK 150 (204)
Confidence 677899999999999988889999999999999987632 22 1111222222222 34 499999999997431
Q ss_pred ch--hH------HHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KD--RF------DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e--~l------e~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. .+ ....+++..+.+..++ .+++++||++|+||.++|+.+
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~vSA~~g~gi~~l~~~l 199 (204)
T 3th5_A 151 DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKTVFDEA 199 (204)
Confidence 10 00 0111222333333332 267999999999999998755
No 149
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.71 E-value=6.3e-18 Score=179.41 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=103.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|++|+|||||+|+|++..... ....+++|++.....+....
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~ 81 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSI------------------------------VSDYAGTTTDPVYKSMELHP 81 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------CCCCEEEEEETT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCc------------------------------cCCCCCeeeeeEEEEEEECC
Confidence 456899999999999999999998543211 11223444444444444443
Q ss_pred e-EEEEEeCCCCCcchhh-------hhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010071 344 Y-HVVVLDSPGHKDFVPN-------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 344 ~-~l~LiDTPG~~~f~~~-------~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
. .+.||||||+.+|... +..++..+|++|||+|+. .......++..+...+.| +|+|+||+
T Consensus 82 ~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~----------~~~~~~~~l~~l~~~~~p-iIvV~NK~ 150 (423)
T 3qq5_A 82 IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA----------PTPYEDDVVNLFKEMEIP-FVVVVNKI 150 (423)
T ss_dssp TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSS----------CCHHHHHHHHHHHHTTCC-EEEECCCC
T ss_pred CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCC----------ChHHHHHHHHHHHhcCCC-EEEEEeCc
Confidence 3 8999999999887543 455788899999999993 235667777777777777 99999999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+...... +....+.+.++ ++++++||++|.|+.++++.+
T Consensus 151 Dl~~~~~~------~~~~~l~~~~g-----~~v~~vSAktg~gI~eL~~~L 190 (423)
T 3qq5_A 151 DVLGEKAE------ELKGLYESRYE-----AKVLLVSALQKKGFDDIGKTI 190 (423)
T ss_dssp TTTTCCCT------HHHHHSSCCTT-----CCCCCCSSCCTTSTTTHHHHH
T ss_pred CCCCccHH------HHHHHHHHHcC-----CCEEEEECCCCCCHHHHHHHH
Confidence 99854322 22222322233 477999999999999998765
No 150
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.70 E-value=5.1e-18 Score=181.52 Aligned_cols=154 Identities=23% Similarity=0.275 Sum_probs=104.9
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~ 341 (519)
.+|+.++|+|+|.+|||||||+|+|++....+ ....+|+|.+.....+.+
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~------------------------------v~~~~g~t~~~~~~~~~~ 68 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEW 68 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------------CEEEECTT
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcc------------------------------cCCCCCcceeEEEEEEEE
Confidence 45677899999999999999999998543211 122367888877788888
Q ss_pred CCeEEEEEeCCC--------CCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEe
Q 010071 342 KNYHVVVLDSPG--------HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (519)
Q Consensus 342 ~~~~l~LiDTPG--------~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvN 413 (519)
.+..+.|||||| ++.+...+..++..+|++|||+|+..+ +.....++..+++..+.| +|+|+|
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~--------~~~~d~~l~~~l~~~~~p-vilV~N 139 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG--------VTAADEEVAKILYRTKKP-VVLAVN 139 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC--------SCHHHHHHHHHHTTCCSC-EEEEEE
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC--------CChHHHHHHHHHHHcCCC-EEEEEE
Confidence 899999999999 556777777888999999999999876 445677777778776766 999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
|+|+.... ..+..+ ..+++. ..+++||++|.|+.++++.+.
T Consensus 140 K~D~~~~~--------~~~~e~-~~lg~~----~~~~iSA~~g~gv~~L~~~i~ 180 (456)
T 4dcu_A 140 KLDNTEMR--------ANIYDF-YSLGFG----EPYPISGTHGLGLGDLLDAVA 180 (456)
T ss_dssp CC-----------------CCS-GGGSSS----SEEECCTTTCTTHHHHHHHHH
T ss_pred Cccchhhh--------hhHHHH-HHcCCC----ceEEeecccccchHHHHHHHH
Confidence 99987321 111111 123442 348999999999999987653
No 151
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=2.6e-17 Score=177.27 Aligned_cols=154 Identities=18% Similarity=0.131 Sum_probs=89.1
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|.+|||||||+|+|++....+ ....+++|.+.....+...+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------------vs~~~gtT~d~~~~~i~~~g~ 281 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAI------------------------------VSHMPGTTRDYIEECFIHDKT 281 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCceEEEEEEEEEECCe
Confidence 45789999999999999999998542211 112245566555555666788
Q ss_pred EEEEEeCCCCCcchhh--------hhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010071 345 HVVVLDSPGHKDFVPN--------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~--------~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
.+.||||||+.++... ...++..+|++|+|+|++.+..... ..+...++......|+|+|+||+|
T Consensus 282 ~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-------~~~~~~~l~~l~~~piIvV~NK~D 354 (476)
T 3gee_A 282 MFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-------LTEIRELKAAHPAAKFLTVANKLD 354 (476)
T ss_dssp EEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGG-------HHHHHHHHHHCTTSEEEEEEECTT
T ss_pred EEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhh-------hHHHHHHHHhcCCCCEEEEEECcC
Confidence 9999999998775532 3557888999999999998732211 122223333333445999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+.... .... +.+... ++ .+++++||++|+||.++++.+.
T Consensus 355 l~~~~--~~~~--~~l~~~----~~----~~~i~vSAktg~GI~eL~~~i~ 393 (476)
T 3gee_A 355 RAANA--DALI--RAIADG----TG----TEVIGISALNGDGIDTLKQHMG 393 (476)
T ss_dssp SCTTT--HHHH--HHHHHH----HT----SCEEECBTTTTBSHHHHHHHHT
T ss_pred CCCcc--chhH--HHHHhc----CC----CceEEEEECCCCCHHHHHHHHH
Confidence 98532 2111 222221 22 3679999999999999987653
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.70 E-value=1e-17 Score=165.06 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=99.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|++|||||||+|+|++....+.... ..++|.......+.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~ 69 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLG-----------------------------SQTLTKTCSKSQGSWG 69 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTT-----------------------------SCCCCCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCC-----------------------------CCceeeeeEEEEEEeC
Confidence 34568999999999999999999996543221110 0112322233334456
Q ss_pred CeEEEEEeCCCCCcch-----------hhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-----CCC
Q 010071 343 NYHVVVLDSPGHKDFV-----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVD 406 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~-----------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-----~~p 406 (519)
+..+.||||||+.++. ..+..+++.+|++|+|+|+... .....+++..+... ..|
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~ 140 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRY---------TSQDQQAAQRVKEIFGEDAMGH 140 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCC---------CHHHHHHHHHHHHHHCGGGGGG
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCC---------CHHHHHHHHHHHHHhCchhhcc
Confidence 7899999999986653 2233467889999999999841 23344444444433 445
Q ss_pred cEEEEEe-ecccccccchhHHHHH----HHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 407 QLIVAVN-KMDAVQYSKDRFDSIK----VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 407 piIVVvN-KiDlv~~~~e~le~i~----e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|+|+| |+|+... .....+. ..+..++..++.....+..+++||++|.|+.++|..+
T Consensus 141 -~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i 202 (260)
T 2xtp_A 141 -TIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCI 202 (260)
T ss_dssp -EEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred -EEEEEEcccccCCc--cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHH
Confidence 566666 9999742 1111111 2344455555432100011899999999999998765
No 153
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.70 E-value=2.4e-17 Score=153.45 Aligned_cols=166 Identities=18% Similarity=0.176 Sum_probs=95.9
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEee---cCC
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF---DSK 342 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~---~~~ 342 (519)
.++|+|+|.+|||||||+++|++....... ....+.|+........+ ...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~---------------------------~~~~t~g~~~~~~~~~~~~~~~~ 54 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLG---------------------------MQSATVGIDVKDWPIQIRDKRKR 54 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC--------------------------------------CSEEEEEEEC--------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCC---------------------------CcceeccEEeEEeeeccccCCCC
Confidence 468999999999999999999853110000 00111222221111111 124
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
...+.||||||+++|......++..++++++|+|.+.+. ..++ ....++..+.......|+|+|+||+|+...
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~s~~---~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-- 127 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ--AEVD---AMKPWLFNIKARASSSPVILVGTHLDVSDE-- 127 (184)
T ss_dssp -CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCH--HHHH---THHHHHHHHHHHCTTCEEEEEEECGGGCCH--
T ss_pred ceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcch--hHHH---HHHHHHHHHHhhCCCCcEEEEEECCCcccc--
Confidence 568999999999988887777888899999999998651 1122 222333333332223459999999998732
Q ss_pred hhHHH-HHHHHHHHHHhcCCCCCCceEEEeccccCC-Ccccccccc
Q 010071 423 DRFDS-IKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVTAPDDG 466 (519)
Q Consensus 423 e~le~-i~e~l~~~l~~~g~~~~~i~~IpvSA~tGe-gI~el~~~i 466 (519)
..... ..+....+.+..++.. ...++++||++|. |+.++++.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~~~~~l~~~i 172 (184)
T 2zej_A 128 KQRKACMSKITKELLNKRGFPA-IRDYHFVNATEESDALAKLRKTI 172 (184)
T ss_dssp HHHHHHHHHHHHHTTTCTTSCE-EEEEEECCTTSCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCcc-hhheEEEecccCchhHHHHHHHH
Confidence 22211 1222233333344311 1138999999996 999987644
No 154
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=3.4e-17 Score=183.88 Aligned_cols=180 Identities=28% Similarity=0.361 Sum_probs=119.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|++|+|||||+++|++..+.+..... ... -...++....++.+++|+......+.+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~--------v~~-----~~~~~D~~~~e~~~giTi~~~~~~~~~~~ 74 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGE--------THE-----GASQMDWMEQEQDRGITITSAATTAAWEG 74 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------------------CCSEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCcccccc--------ccC-----CceecccchhhhhcCceEeeeeEEEEECC
Confidence 35689999999999999999999976554322110 000 01234555566678888877777777788
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..++|||||||.+|...+..+++.+|++|+|+|+..+ ...++..++..+...++| +|+|+||+|+...
T Consensus 75 ~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g--------~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~--- 142 (693)
T 2xex_A 75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG--------VEPQTETVWRQATTYGVP-RIVFVNKMDKLGA--- 142 (693)
T ss_dssp EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCC-EEEEEECTTSTTC---
T ss_pred eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCC--------CcHHHHHHHHHHHHcCCC-EEEEEECCCcccc---
Confidence 9999999999999999999999999999999999987 345666777777777777 8999999999853
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYWM 474 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~~ 474 (519)
.+..+.+.+...+... ....++|+|+ |.|+..+.+.+....|++.
T Consensus 143 ~~~~~~~~l~~~l~~~----~~~~~ipisa--~~~~~~l~d~l~~~~~~~~ 187 (693)
T 2xex_A 143 NFEYSVSTLHDRLQAN----AAPIQLPIGA--EDEFEAIIDLVEMKCFKYT 187 (693)
T ss_dssp CHHHHHHHHHHHHCCC----EEESEEEECC--GGGCCEEEETTTTEEEECC
T ss_pred chHHHHHHHHHHhCCC----ceeEEeeccc--CCCcceeeeeecceeEEec
Confidence 2444555666554321 1235689998 7788877765544455553
No 155
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.69 E-value=8.1e-17 Score=181.05 Aligned_cols=135 Identities=30% Similarity=0.380 Sum_probs=105.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|++|+|||||+++|++..+.+....- ... + ...++....++.+|+|+......+.+.+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~--------v~~-g----~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 74 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGE--------VHD-G----AATMDWMEQEQERGITITSAATTAFWSG 74 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccc--------cCC-C----ceeecChhhHHhcCceeeeceEEEEECC
Confidence 45689999999999999999999976554432210 000 0 1345555667788888877766666655
Q ss_pred -------eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010071 344 -------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 344 -------~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
+.++|||||||.+|...+..+++.+|++|+|||++.+ ...++..++.++...++| +|+|+||+|
T Consensus 75 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~qt~~~~~~~~~~~ip-~ilviNKiD 145 (704)
T 2rdo_7 75 MAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG--------VQPQSETVWRQANKYKVP-RIAFVNKMD 145 (704)
T ss_pred ccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC--------CcHHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence 8999999999999999999999999999999999987 456777777778777887 899999999
Q ss_pred cccc
Q 010071 417 AVQY 420 (519)
Q Consensus 417 lv~~ 420 (519)
+...
T Consensus 146 ~~~~ 149 (704)
T 2rdo_7 146 RMGA 149 (704)
T ss_pred cccc
Confidence 8753
No 156
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.69 E-value=4.8e-17 Score=182.62 Aligned_cols=180 Identities=27% Similarity=0.338 Sum_probs=116.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|++|+|||||+++|+...+.+..... ... -...++....++.+++|+......+.+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~--------v~~-----~~~~~d~~~~E~~~giTi~~~~~~~~~~ 75 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGE--------VHE-----GAATMDFMEQERERGITITAAVTTCFWK 75 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEET
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccce--------ecC-----CceeccCchhhhhcccccccceEEEEEC
Confidence 346789999999999999999999966554322110 000 0133555666677888887777777788
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~ 422 (519)
+..++|||||||.+|...+..+++.+|++|+|+|+..+ ...++..++..+...++| +|+|+||+|+....
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g--------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~- 145 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG--------VEPQSETVWRQAEKYKVP-RIAFANKMDKTGAD- 145 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCC--------cchhhHHHHHHHHHcCCC-EEEEEECCCcccCC-
Confidence 89999999999999999999999999999999999987 345666777777777877 89999999998532
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccccCcccc
Q 010071 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIRGPVYW 473 (519)
Q Consensus 423 e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~~~w~~ 473 (519)
+..+.+++...+ +.. .....+|+|+ +.++..+.+.+....|++
T Consensus 146 --~~~~~~~l~~~l---~~~-~~~~~~Pi~~--~~~~~g~~d~~~~~~~~~ 188 (691)
T 1dar_A 146 --LWLVIRTMQERL---GAR-PVVMQLPIGR--EDTFSGIIDVLRMKAYTY 188 (691)
T ss_dssp --HHHHHHHHHHTT---CCC-EEECEEEESC--GGGCCEEEETTTTEEEEE
T ss_pred --HHHHHHHHHHHh---CCC-ccceeccccC--CCcccchhhhhcceeeEe
Confidence 444555555554 321 1234689998 566666555444444555
No 157
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.69 E-value=2.3e-16 Score=159.28 Aligned_cols=161 Identities=16% Similarity=0.087 Sum_probs=103.2
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|.+|+|||||+++|++..... ....+.+... .....+.....
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~ 203 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPG-----------------------------EYIPTVFDNY-SANVMVDGKPV 203 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCSEEEE-EEEEEETTEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCc-----------------------------ccCCccccee-EEEEEECCEEE
Confidence 45889999999999999999998432100 0000111111 11223344455
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccccccch
Q 010071 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv~~~~e 423 (519)
.+.||||||++.|...+..++..+|++|+|+|++...+ +......+...+... ...|+|+|+||+|+.... .
T Consensus 204 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~ 276 (332)
T 2wkq_A 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS------FHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK-D 276 (332)
T ss_dssp EEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCH-H
T ss_pred EEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHH------HHHHHHHHHHHHHhhCCCCcEEEEEEchhccccc-c
Confidence 67799999999999999999999999999999987521 222221223333332 233499999999997421 1
Q ss_pred hHH---------HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 424 RFD---------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le---------~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..+ ...++...+.+..++ .+++++||++|.||.++|+.+
T Consensus 277 ~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l~~~l 324 (332)
T 2wkq_A 277 TIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKTVFDEA 324 (332)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHHHHHH
T ss_pred hhhhccccccccccHHHHHHHHHHcCC----cEEEEecCCCCcCHHHHHHHH
Confidence 111 012334444545443 378999999999999998754
No 158
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.69 E-value=1.1e-17 Score=154.81 Aligned_cols=154 Identities=22% Similarity=0.293 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
++|+|+|.+|+|||||+++|++..... ...++++.......+. .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~----~~ 46 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRR-------------------------------GKRPGVTRKIIEIEWK----NH 46 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSS-------------------------------SSSTTCTTSCEEEEET----TE
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCcc-------------------------------CCCCCccceeEEEecC----CE
Confidence 589999999999999999998532110 0112222222222222 68
Q ss_pred EEEeCCC-----------CCcchhhhhhcc----ccCCeEEEEeecCCCcccccc-cch-----hHHHHHHHHHHHHhCC
Q 010071 347 VVLDSPG-----------HKDFVPNMISGA----TQSDAAILVIDASVGSFEVGM-NTA-----KGLTREHAQLIRSFGV 405 (519)
Q Consensus 347 ~LiDTPG-----------~~~f~~~~~~~l----~~aD~vIlVVDas~g~~e~~~-~~l-----~~~~~e~l~ll~~~~~ 405 (519)
.|||||| ++.+...+..++ ..++++++|+|..... .. ..+ .....++...+...+.
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAP---EIIKRWEKRGEIPIDVEFYQFLRELDI 123 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHH---HHHHHHHHTTCCCHHHHHHHHHHHTTC
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhh---hHHHhhhccCccHHHHHHHHHHHhcCC
Confidence 9999999 444554444443 4466777777765320 00 000 0012234444555566
Q ss_pred CcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCC--CceEEEeccccCCCcccccccc
Q 010071 406 DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 406 ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~--~i~~IpvSA~tGegI~el~~~i 466 (519)
| +++|+||+|+.... .+.+..+.+.+++... ...++++||++|+||.++|+.+
T Consensus 124 p-iilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 178 (190)
T 2cxx_A 124 P-TIVAVNKLDKIKNV-------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 178 (190)
T ss_dssp C-EEEEEECGGGCSCH-------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHH
T ss_pred c-eEEEeehHhccCcH-------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHH
Confidence 6 99999999998532 2233334444454210 2357999999999999998754
No 159
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.68 E-value=6.8e-17 Score=159.12 Aligned_cols=161 Identities=16% Similarity=0.094 Sum_probs=101.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|.+|||||||+|+|++....+.... ..++|.......+...
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~-----------------------------~~~~T~~~~~~~~~~~ 68 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLG-----------------------------ATSVTRACTTGSRRWD 68 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------------------CCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCC-----------------------------CCCccccEEEEEEEEC
Confidence 45679999999999999999999996543221110 1123333333345556
Q ss_pred CeEEEEEeCCCC--------Ccchhhhhhcc----ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh------C
Q 010071 343 NYHVVVLDSPGH--------KDFVPNMISGA----TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------G 404 (519)
Q Consensus 343 ~~~l~LiDTPG~--------~~f~~~~~~~l----~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~------~ 404 (519)
+..++||||||+ +.+...+..++ ..+|++|+|+|+... .....+.+..+... +
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~---------~~~~~~~~~~l~~~~~~~~~~ 139 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRF---------TAQDQQAVRQVRDMFGEDVLK 139 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBC---------CHHHHHHHHHHHHHHCGGGGG
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC---------CHHHHHHHHHHHHHhChhhhc
Confidence 889999999997 55555555554 889999999999742 22333434444332 3
Q ss_pred CCcEEEEEeecccccccchhHHHHH-----HHHHHHHHhcCCCCCCceEEEeccc-----cCCCccccccccccCc
Q 010071 405 VDQLIVAVNKMDAVQYSKDRFDSIK-----VQLGTFLRSCGFKDASLTWIPLSAL-----ENQNLVTAPDDGIRGP 470 (519)
Q Consensus 405 ~ppiIVVvNKiDlv~~~~e~le~i~-----e~l~~~l~~~g~~~~~i~~IpvSA~-----tGegI~el~~~i~~~~ 470 (519)
. |+|||+||+|+.... ++... +.+..+++.+|. .++++++. .+.|+.+|+..+..+.
T Consensus 140 ~-~iilv~nK~Dl~~~~---~~~~l~~~~~~~l~~l~~~~g~-----~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 140 W-MVIVFTRKEDLAGGS---LHDYVSNTENRALRELVAECGG-----RVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp G-EEEEEECGGGGTTCC---HHHHHHHCCCHHHHHHHHHTTT-----CEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-EEEEEEchHhcCCCC---HHHHHhhcccHHHHHHHHHcCC-----eEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 3 499999999997432 22222 346777777774 34555443 3689999987664433
No 160
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.68 E-value=6.2e-17 Score=185.28 Aligned_cols=172 Identities=26% Similarity=0.351 Sum_probs=112.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec---
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--- 340 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~--- 340 (519)
.+.++|+|+|++|+|||||+++|++..+.+..... +. ...++....++.+|+|+......+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~----------~~-----~~~~D~~~~E~~rgiTI~~~~~~~~~~~ 81 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKA----------GE-----ARFTDTRKDEQERGITIKSTAISLYSEM 81 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------------------CCCBCCCEEEEEEEC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccC----------CC-----ceeecCchhhhhcceeEeeceeEEEecc
Confidence 45689999999999999999999987665543220 00 1234555666677777654333222
Q ss_pred -------------CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCc
Q 010071 341 -------------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ 407 (519)
Q Consensus 341 -------------~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~pp 407 (519)
..++.++|||||||.+|...+..+++.+|++|+|||+..+ ...++..++..+...++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g--------~~~qt~~~~~~~~~~~~p- 152 (842)
T 1n0u_A 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG--------VCVQTETVLRQALGERIK- 152 (842)
T ss_dssp CHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCE-
T ss_pred cccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-
Confidence 2368899999999999999999999999999999999987 344566666666667777
Q ss_pred EEEEEeeccccccc--------chhHHHHHHHHHHHHHhc-----C---CCCCCceEEEeccccCCCc
Q 010071 408 LIVAVNKMDAVQYS--------KDRFDSIKVQLGTFLRSC-----G---FKDASLTWIPLSALENQNL 459 (519)
Q Consensus 408 iIVVvNKiDlv~~~--------~e~le~i~e~l~~~l~~~-----g---~~~~~i~~IpvSA~tGegI 459 (519)
+|+|+||+|+.... ...++.+.+.+...+..+ + +.+...++...||++|.++
T Consensus 153 ~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~ 220 (842)
T 1n0u_A 153 PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAF 220 (842)
T ss_dssp EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEE
T ss_pred eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeeccccccc
Confidence 79999999987321 223445555555555431 1 3322346788899988664
No 161
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.67 E-value=1.5e-16 Score=158.67 Aligned_cols=162 Identities=16% Similarity=0.216 Sum_probs=90.7
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC--
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~-- 342 (519)
..++|+|+|.+|+|||||+|+|++......... .......++++.......+...
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~-----------------------~~~~~~~~t~~~~~~~~~~~~~~~ 63 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP-----------------------GPSHRIKKTVQVEQSKVLIKEGGV 63 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC--------------------------------------CCCEEEEEEECC--C
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCC-----------------------CcccccCCceEEEEEEEEEecCCe
Confidence 468999999999999999999985433221100 0000011222222222333333
Q ss_pred CeEEEEEeCCCCCcc-------hhhh-------hhcc-------------ccCCeEEEEeecCC-CcccccccchhHHHH
Q 010071 343 NYHVVVLDSPGHKDF-------VPNM-------ISGA-------------TQSDAAILVIDASV-GSFEVGMNTAKGLTR 394 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f-------~~~~-------~~~l-------------~~aD~vIlVVDas~-g~~e~~~~~l~~~~~ 394 (519)
...++||||||+.++ .... ..++ ..+|+++|+++... + +.....
T Consensus 64 ~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~--------~~~~d~ 135 (274)
T 3t5d_A 64 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG--------LKPLDI 135 (274)
T ss_dssp CEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS--------CCHHHH
T ss_pred EEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC--------CCHHHH
Confidence 358999999997432 1111 1111 23789999987664 3 345566
Q ss_pred HHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 395 e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+++..+.. ++| +|+|+||+|+. ....++..++.+...+...++ +++++||++++|+.++++.+
T Consensus 136 ~~l~~l~~-~~p-vi~V~nK~D~~--~~~e~~~~~~~i~~~l~~~~i-----~v~~~sa~~~~~~~~l~~~l 198 (274)
T 3t5d_A 136 EFMKRLHE-KVN-IIPLIAKADTL--TPEECQQFKKQIMKEIQEHKI-----KIYEFPETDDEEENKLVKKI 198 (274)
T ss_dssp HHHHHHTT-TSC-EEEEESSGGGS--CHHHHHHHHHHHHHHHHHTTC-----CCCCC-----------CHHH
T ss_pred HHHHHHhc-cCC-EEEEEeccCCC--CHHHHHHHHHHHHHHHHHcCC-----eEEcCCCCCChhHHHHHHHH
Confidence 66666655 555 99999999997 445566666777777777664 46899999999999987644
No 162
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.67 E-value=4.9e-17 Score=175.28 Aligned_cols=150 Identities=25% Similarity=0.279 Sum_probs=100.6
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|.+|||||||+|+|++....+... .+++|.+.....+...+..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~------------------------------~~gTT~d~~~~~i~~~g~~ 292 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTD------------------------------IPGTTRDVISEEIVIRGIL 292 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCC------------------------------SSCCSSCSCCEEEEETTEE
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCC------------------------------CCCeeeeeEEEEEecCCeE
Confidence 4799999999999999999999653222111 1333333333334456788
Q ss_pred EEEEeCCCCC-cch--------hhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010071 346 VVVLDSPGHK-DFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 346 l~LiDTPG~~-~f~--------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
++||||||+. ++. .....++..+|++|+|+|++.+.. ....+++..+ .+. |+|+|+||+|
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s--------~~~~~il~~l--~~~-piivV~NK~D 361 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD--------EEDRKILERI--KNK-RYLVVINKVD 361 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC--------HHHHHHHHHH--TTS-SEEEEEEECS
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC--------HHHHHHHHHh--cCC-CEEEEEECcc
Confidence 9999999988 553 234567888999999999987622 1222333333 234 5999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccccc
Q 010071 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIR 468 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~ 468 (519)
+... ...+ ++..++ + ..++++++||++|+||.++++.+..
T Consensus 362 L~~~--~~~~----~~~~~~---~---~~~~~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 362 VVEK--INEE----EIKNKL---G---TDRHMVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp SCCC--CCHH----HHHHHH---T---CSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred cccc--cCHH----HHHHHh---c---CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 9742 1222 222222 2 1247899999999999999986543
No 163
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.67 E-value=1.9e-16 Score=176.98 Aligned_cols=133 Identities=28% Similarity=0.377 Sum_probs=102.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+..+|+|+|++|+|||||+++|++..+.+...... ..+ ....+....++.+++++......+.+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-------~~g------~~~~d~~~~e~~~giti~~~~~~~~~~~ 73 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-------EEG------TTTTDYTPEAKLHRTTVRTGVAPLLFRG 73 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-------GGT------CCSSCCSHHHHHTTSCCSCEEEEEEETT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-------cCC------cccccCCHHHHhcCCeEEecceEEeeCC
Confidence 346789999999999999999999765543221100 001 1223444445566777766666677778
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
..++|||||||.+|...+..+++.+|++|+|+|+..+ +..++.+++..+...++| +|+|+||+|+.
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g--------~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~ 139 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG--------VQVGTERAWTVAERLGLP-RMVVVTKLDKG 139 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-EEEEEECGGGC
T ss_pred EEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcc--------cchhHHHHHHHHHHccCC-EEEEecCCchh
Confidence 9999999999999999999999999999999999877 557788888888888887 89999999986
No 164
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.64 E-value=5e-16 Score=160.93 Aligned_cols=158 Identities=22% Similarity=0.293 Sum_probs=96.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|.+|||||||+|+|++....+. ..++.|.......+...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~ 213 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA-------------------------------SYPFTTRGINVGQFEDGY 213 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE-------------------------------CCTTCSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC-------------------------------CCCCeeeceeEEEEEecC
Confidence 3567899999999999999999985431100 001122222222333456
Q ss_pred eEEEEEeCCCCCcchh---------hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEee
Q 010071 344 YHVVVLDSPGHKDFVP---------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~---------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNK 414 (519)
..+.+|||||+..+.. ........+|++|+|+|++... ++ .+..+...+..+....+..|+|+|+||
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~-~~~~~~~~~~~i~~~~~~~piilV~NK 289 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GF-PLEEQIHLFEEVHGEFKDLPFLVVINK 289 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SS-CHHHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cC-CHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7899999999765421 1122334699999999987641 11 122233333333333323349999999
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 415 iDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+|+... ..++ .+..++...+ ++++++||++|+||.++++.+.
T Consensus 290 ~Dl~~~--~~~~----~~~~~~~~~~-----~~~~~iSA~~g~gi~~l~~~i~ 331 (357)
T 2e87_A 290 IDVADE--ENIK----RLEKFVKEKG-----LNPIKISALKGTGIDLVKEEII 331 (357)
T ss_dssp TTTCCH--HHHH----HHHHHHHHTT-----CCCEECBTTTTBTHHHHHHHHH
T ss_pred cccCCh--HHHH----HHHHHHHhcC-----CCeEEEeCCCCcCHHHHHHHHH
Confidence 999742 2222 2333333333 4679999999999999987653
No 165
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.64 E-value=7.8e-17 Score=172.88 Aligned_cols=149 Identities=24% Similarity=0.231 Sum_probs=90.6
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
..++|+|+|.+|||||||+|+|++....+.... +++|.+.....+...+.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~------------------------------~gtT~d~~~~~i~~~g~ 272 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL------------------------------PGTTRDVVESQLVVGGI 272 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC------------------------------TTCCHHHHHHEEEETTE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCC------------------------------CCeeEEEEEEEEEECCE
Confidence 457899999999999999999996543221111 22222221122334667
Q ss_pred EEEEEeCCCCCcchh--------hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010071 345 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
.+.||||||+.++.. ....++..+|++|+|+|++.+ +.....+++..+. ..|+|+|+||+|
T Consensus 273 ~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~--------~~~~~~~i~~~l~---~~piivV~NK~D 341 (462)
T 3geh_A 273 PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATG--------WTTGDQEIYEQVK---HRPLILVMNKID 341 (462)
T ss_dssp EEEECC--------------------CCCCSCSEEEEEEETTTC--------SCHHHHHHHHHHT---TSCEEEEEECTT
T ss_pred EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCC--------CCHHHHHHHHhcc---CCcEEEEEECCC
Confidence 899999999866432 234467889999999999976 2233344444333 245999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+.... ... .++.+. ...+++++||++|.||.++++.+.
T Consensus 342 l~~~~--~~~--------~~~~~~---~~~~~i~iSAktg~Gi~eL~~~i~ 379 (462)
T 3geh_A 342 LVEKQ--LIT--------SLEYPE---NITQIVHTAAAQKQGIDSLETAIL 379 (462)
T ss_dssp SSCGG--GST--------TCCCCT---TCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred CCcch--hhH--------HHHHhc---cCCcEEEEECCCCCCHHHHHHHHH
Confidence 97432 111 111111 235789999999999999987653
No 166
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.64 E-value=2.5e-16 Score=161.51 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEEE
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l~ 347 (519)
||+|+|..|||||||++++.+..... . .....++.|+... .+. ....+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~--~------------------------~~~~~~Tig~~~~----~v~-~~v~Lq 49 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL--D------------------------TLYLESTSNPSLE----HFS-TLIDLA 49 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG--G------------------------GTTCCCCCSCCCE----EEC-SSSCEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC--c------------------------cceecCeeeeeeE----EEc-cEEEEE
Confidence 58999999999999999876321100 0 0001111222211 122 347899
Q ss_pred EEeCCCCCcchh---hhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCCCcEEEEEeecccccccch
Q 010071 348 VLDSPGHKDFVP---NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 348 LiDTPG~~~f~~---~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~ppiIVVvNKiDlv~~~~e 423 (519)
|||||||++|.. .+..+++.++++|||+|++.. ++..+ ....+++..+.. ....|++||+||+|+.... .
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~----~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~-~ 123 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAI----TNLAMIIEYAYKVNPSINIEVLIHKVDGLSED-F 123 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHH----HHHHHHHHHHHHHCTTCEEEEECCCCCSSCSH-H
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHH----HHHHHHHHHHhhcCCCCcEEEEEECcccCchh-h
Confidence 999999999964 356788999999999999975 22111 222222322222 2223499999999998421 1
Q ss_pred h---HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccccc
Q 010071 424 R---FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIR 468 (519)
Q Consensus 424 ~---le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~ 468 (519)
+ ...+..+....+...++...++.|+++||++ .||.++|..+.+
T Consensus 124 R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~ 170 (331)
T 3r7w_B 124 KVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQ 170 (331)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHT
T ss_pred hhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHH
Confidence 1 1233333333333333223468999999998 599999987653
No 167
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.63 E-value=2.3e-16 Score=171.92 Aligned_cols=156 Identities=14% Similarity=0.154 Sum_probs=97.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEE------
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV------ 336 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~------ 336 (519)
..+.+||+|+|.+|||||||+++|++..... ....+.|+++....
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~-----------------------------~~~~t~g~~~~~~~~~~~~~ 88 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDP-----------------------------KESQTHGLNVVTKQAPNIKG 88 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------------CCCEEEEEGGGSGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceEEEEeccccccc
Confidence 3567899999999999999999998532110 00011122111110
Q ss_pred E--eecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC-CCcEEEEEe
Q 010071 337 A--YFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVN 413 (519)
Q Consensus 337 ~--~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-~ppiIVVvN 413 (519)
. ........+.||||||++.|......+++.+|++|+|+|++.. + ....++..+...+ ..|+|||+|
T Consensus 89 v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~------~----~~~~~~~~l~~~~~~~pvilV~N 158 (535)
T 3dpu_A 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD------S----NKHYWLRHIEKYGGKSPVIVVMN 158 (535)
T ss_dssp GTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG------G----GHHHHHHHHHHHSSSCCEEEEEC
T ss_pred eeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc------h----hHHHHHHHHHHhCCCCCEEEEEE
Confidence 0 1123467899999999999998888888899999999999853 1 2233333344433 234999999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+|+....... .+.+...+...+ .+++++||++|.||.+++..+
T Consensus 159 K~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~vSA~~g~gi~eL~~~l 202 (535)
T 3dpu_A 159 KIDENPSYNIE----QKKINERFPAIE-----NRFHRISCKNGDGVESIAKSL 202 (535)
T ss_dssp CTTTCTTCCCC----HHHHHHHCGGGT-----TCEEECCC-----CTTHHHHH
T ss_pred CCCcccccccC----HHHHHHHHHhcC-----CceEEEecCcccCHHHHHHHH
Confidence 99997532222 234445554444 368999999999999998764
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.63 E-value=1.9e-15 Score=142.37 Aligned_cols=156 Identities=18% Similarity=0.187 Sum_probs=101.5
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeE
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~ 345 (519)
.++|+|+|+.|||||||+++|++..... ...+..++........+......
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~i~~~g~~~~ 55 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-----------------------------ESKSTIGVEFATRSIQVDGKTIK 55 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC--------------------------------CCCSCEEEEEEEEETTEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEE
Confidence 5789999999999999999998542211 01112233333333444444567
Q ss_pred EEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeecccccccch
Q 010071 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 346 l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~~e 423 (519)
+.||||||++.+...+..++..++++|+|+|+....+ +. ....+ +..+... ...|+++|+||+|+......
T Consensus 56 ~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~-~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~ 128 (199)
T 2f9l_A 56 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT---YE---NVERW-LKELRDHADSNIVIMLVGNKSDLRHLRAV 128 (199)
T ss_dssp EEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH---HH---THHHH-HHHHHHHSCTTCEEEEEEECTTCGGGCCS
T ss_pred EEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH---HH---HHHHH-HHHHHHhcCCCCeEEEEEECcccccccCc
Confidence 8899999999888777777888999999999986521 11 11111 2222221 23359999999999743222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. +....++...+ +.++++||+++.|+.++++.+
T Consensus 129 ~~----~~a~~l~~~~~-----~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 129 PT----DEARAFAEKNN-----LSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp CH----HHHHHHHHHTT-----CEEEECCTTTCTTHHHHHHHH
T ss_pred CH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHHH
Confidence 22 22334444433 578999999999999998754
No 169
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=2e-16 Score=150.48 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=86.8
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
..+.++|+|+|++|+|||||+++|++....... ....+.++ ....
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~----------------------------~~~~~~~~-------~~~~ 53 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----------------------------VSQEPLSA-------ADYD 53 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC----------------------------CCSSCEEE-------TTGG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCee----------------------------eecCceEE-------EEee
Confidence 345689999999999999999999854321100 00001111 1114
Q ss_pred CeEEEEEeCCCCCcchhhhhhcccc----CCeEEEEeecC-CCcccccccchhHHHHHHHHHHHH------hCCCcEEEE
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQ----SDAAILVIDAS-VGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVA 411 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~----aD~vIlVVDas-~g~~e~~~~~l~~~~~e~l~ll~~------~~~ppiIVV 411 (519)
...+.||||||++.+...+..++.. +|++|||+|++ .. .. +.....++..++.. .+.| +|||
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~p-~ilv 126 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP---KK---LTTTAEFLVDILSITESSCENGID-ILIA 126 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCT---TC---CHHHHHHHHHHHHHHHHHSTTCCC-EEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCCh---HH---HHHHHHHHHHHHhcccccccCCCC-EEEE
Confidence 5679999999999998888777776 89999999998 33 12 23333334333332 2444 9999
Q ss_pred Eeecccccccc--hhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCc
Q 010071 412 VNKMDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 459 (519)
Q Consensus 412 vNKiDlv~~~~--e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI 459 (519)
+||+|+..... ...+.+.+++..+....+ +.++++||++|.+-
T Consensus 127 ~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 127 CNKSELFTARPPSKIKDALESEIQKVIERRK-----KSLNEVERKINEED 171 (218)
T ss_dssp EECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-----HHHHC---------
T ss_pred EEchHhcccCCHHHHHHHHHHHHHHHHHHHh-----cccccccccccccc
Confidence 99999985322 111222333444433332 36799999998763
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.63 E-value=6.5e-16 Score=154.42 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=68.7
Q ss_pred CeEEEEEeCCCCC-------------cchhhhhhccccCCeEE-EEeecCCCcccccccchhHHH-HHHHHHHHHhCCCc
Q 010071 343 NYHVVVLDSPGHK-------------DFVPNMISGATQSDAAI-LVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVDQ 407 (519)
Q Consensus 343 ~~~l~LiDTPG~~-------------~f~~~~~~~l~~aD~vI-lVVDas~g~~e~~~~~l~~~~-~e~l~ll~~~~~pp 407 (519)
...++||||||+. .+...+..++..++.+| +|+|++.+. .... ..++..+...+.|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~~~~~~~~~~~~- 194 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--------ANSDALKIAKEVDPQGQR- 194 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCG--------GGCHHHHHHHHHCTTCSS-
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcch--------hhhHHHHHHHHhCCCCCe-
Confidence 4689999999964 24455667788888776 799998752 1222 2344444444555
Q ss_pred EEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 408 iIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+|+|+||+|+....... .+.+...+. .+.....+++++||++|.|+.++++.+
T Consensus 195 ~i~V~NK~Dl~~~~~~~----~~~~~~~~~--~~~~~~~~v~~~SA~~~~gi~~l~~~l 247 (299)
T 2aka_B 195 TIGVITKLDLMDEGTDA----RDVLENKLL--PLRRGYIGVVNRSQKDIDGKKDITAAL 247 (299)
T ss_dssp EEEEEECGGGSCTTCCC----HHHHTTCSS--CCTTCEEECCCCCCBCTTSCBCHHHHH
T ss_pred EEEEEEccccCCCCchH----HHHHhCCcC--cCCCCcEEEECCChhhccccccHHHHH
Confidence 99999999998532211 112221111 111112467899999999999998763
No 171
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.62 E-value=6.9e-17 Score=167.01 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=93.5
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC-e
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-Y 344 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~-~ 344 (519)
..+|+|+|.+|||||||+++|++....+.. + +..|.......+...+ .
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~-----------------~--------------~ftTl~p~~g~v~~~~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIAD-----------------Y--------------HFTTLVPNLGMVETDDGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESS-----------------T--------------TSSCCCCCEEEEECSSSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcccc-----------------C--------------CccccCceEEEEEeCCCc
Confidence 347999999999999999999854221100 0 1111111111233333 6
Q ss_pred EEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh----CCCcEEEEEe
Q 010071 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVN 413 (519)
Q Consensus 345 ~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~~ppiIVVvN 413 (519)
.++||||||+.. +...++.++..++++|+|||++.......+. ....+...+... ...|+|||+|
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~----~~~~~~~eL~~~~~~l~~~p~ilV~N 282 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYD----DYLTINQELSEYNLRLTERPQIIVAN 282 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHH----HHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHH----HHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 899999999532 3455566677799999999998621111222 222233333332 2345899999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+|+... . +.+..+.+.++. .++++++||++++||.+++..+
T Consensus 283 K~Dl~~~-~-------e~~~~l~~~l~~---~~~v~~iSA~tg~gi~eL~~~l 324 (342)
T 1lnz_A 283 KMDMPEA-A-------ENLEAFKEKLTD---DYPVFPISAVTREGLRELLFEV 324 (342)
T ss_dssp CTTSTTH-H-------HHHHHHHHHCCS---CCCBCCCSSCCSSTTHHHHHHH
T ss_pred CccCCCC-H-------HHHHHHHHHhhc---CCCEEEEECCCCcCHHHHHHHH
Confidence 9999742 1 122222233321 1467999999999999998754
No 172
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.61 E-value=4.1e-15 Score=139.58 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=102.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
...++|+|+|+.|||||||+++|++..... ...++.+.........+....
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----------------------------ESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceEEEEEEEEECCEE
Confidence 346899999999999999999998532211 111223333333334444445
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh--CCCcEEEEEeeccccccc
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~~ppiIVVvNKiDlv~~~ 421 (519)
..+.+|||||++++...+..++..++++++|+|..... .++.+ ..+ +..+... ...|+++|+||+|+....
T Consensus 78 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~---~~~-~~~~~~~~~~~~~i~~v~nK~Dl~~~~ 150 (191)
T 1oix_A 78 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHL---TYENV---ERW-LKELRDHADSNIVIMLVGNKSDLRHLR 150 (191)
T ss_dssp EEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHH---HHHTH---HHH-HHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHH---HHHHH---HHH-HHHHHHhcCCCCcEEEEEECccccccc
Confidence 56778999999998888888888899999999998642 11111 111 2222221 223599999999987432
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.... .....++... .+.++.+||+++.|+.++++.+
T Consensus 151 ~~~~----~~a~~l~~~~-----~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 151 AVPT----DEARAFAEKN-----GLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp CSCH----HHHHHHHHHT-----TCEEEECCTTTCTTHHHHHHHH
T ss_pred ccCH----HHHHHHHHHc-----CCEEEEEeCCCCCCHHHHHHHH
Confidence 2222 2233344333 3578999999999999998643
No 173
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=147.43 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=96.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
....++|+|+|.+|||||||+|+|++....... ....++|.......+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~ 76 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSG-----------------------------TAAKSITKKCEKRSSSWK 76 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------------------------------CCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccC-----------------------------CCCCceeeeEEEEEEEeC
Confidence 456789999999999999999999954331100 011133333333445557
Q ss_pred CeEEEEEeCCCCC-----------cchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEE
Q 010071 343 NYHVVVLDSPGHK-----------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (519)
Q Consensus 343 ~~~l~LiDTPG~~-----------~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVV 411 (519)
+..+.||||||.. .+...+..++..+|++|+|+|+..... . ......++...+......|+|||
T Consensus 77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~----~~~~l~~~~~~~~~~~~~~~iiv 151 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-E----EHKATEKILKMFGERARSFMILI 151 (239)
T ss_dssp TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-H----HHHHHHHHHHHHHHHHGGGEEEE
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-H----HHHHHHHHHHHhhhhccceEEEE
Confidence 7899999999954 344555566678999999999975311 0 11222233222222112359999
Q ss_pred EeecccccccchhHH----HHHHHHHHHHHhcCCCCCCceEEEecccc-----CCCcccccccc
Q 010071 412 VNKMDAVQYSKDRFD----SIKVQLGTFLRSCGFKDASLTWIPLSALE-----NQNLVTAPDDG 466 (519)
Q Consensus 412 vNKiDlv~~~~e~le----~i~e~l~~~l~~~g~~~~~i~~IpvSA~t-----GegI~el~~~i 466 (519)
+||+|+... ..++ ...+.+..+++.++. .++++++.. +.++.+++..+
T Consensus 152 ~nK~D~~~~--~~~~~~i~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~~~~~v~~ll~~i 208 (239)
T 3lxx_A 152 FTRKDDLGD--TNLHDYLREAPEDIQDLMDIFGD-----RYCALNNKATGAEQEAQRAQLLGLI 208 (239)
T ss_dssp EECGGGC--------------CHHHHHHHHHHSS-----SEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EeCCccCCc--ccHHHHHHhchHHHHHHHHHcCC-----EEEEEECCCCccccHHHHHHHHHHH
Confidence 999998742 2222 222456777777764 356665553 36888887654
No 174
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.60 E-value=7.5e-16 Score=152.12 Aligned_cols=88 Identities=20% Similarity=0.123 Sum_probs=53.3
Q ss_pred cCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCc
Q 010071 367 QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASL 446 (519)
Q Consensus 367 ~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i 446 (519)
.+|++|+|+|++... ..+++.+..+..++.......+.| +|||+||+|+.. ...+ +++..+.... .++
T Consensus 162 ~ad~vilV~D~t~~~-~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~--~~~v----~~~~~~~~~~----~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGM-NRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGV--ERYI----RDAHTFALSK----KNL 229 (255)
T ss_dssp ECCEEEEEEECBC-----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBC--HHHH----HHHHHHHHTS----SSC
T ss_pred cCCEEEEEEECCCCc-hhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccc--cHHH----HHHHHHHHhc----CCC
Confidence 699999999998640 012222222233332222223445 999999999963 2222 3344444332 135
Q ss_pred eEEEeccccCCCcccccccc
Q 010071 447 TWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 447 ~~IpvSA~tGegI~el~~~i 466 (519)
+++++||++|.||.++|..+
T Consensus 230 ~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 230 QVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp CEEECBTTTTBSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 78999999999999998754
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.58 E-value=7.1e-15 Score=138.74 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=94.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+..+|+|+|++|||||||+|+|++..... ...+..|.+.......+. +
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~-----------------------------~~~~~~G~~~~~~~~~~~--~ 72 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLA-----------------------------RTSKTPGRTQLINLFEVA--D 72 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC------------------------------------------CCEEEEEEE--T
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccc-----------------------------cccCCCccceeeEEEEec--C
Confidence 345789999999999999999998532100 001122333222222222 2
Q ss_pred eEEEEEeCCCCCc----------chhhhhhc---cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEE
Q 010071 344 YHVVVLDSPGHKD----------FVPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (519)
Q Consensus 344 ~~l~LiDTPG~~~----------f~~~~~~~---l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIV 410 (519)
.+.||||||+.. +...+..+ ...++++++|+|+..+. .....++..++...+.| +++
T Consensus 73 -~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~~~~~~~~-~~~ 142 (210)
T 1pui_A 73 -GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL--------KDLDQQMIEWAVDSNIA-VLV 142 (210)
T ss_dssp -TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHHTTCC-EEE
T ss_pred -CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC--------chhHHHHHHHHHHcCCC-eEE
Confidence 678999999753 22222122 35689999999998752 12233444555566776 888
Q ss_pred EEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 411 VvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+||+|+.. ....+.....+..++...+. .+.++|+||+++.|+.++++.+
T Consensus 143 v~nK~D~~s--~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sal~~~~~~~l~~~l 193 (210)
T 1pui_A 143 LLTKADKLA--SGARKAQLNMVREAVLAFNG---DVQVETFSSLKKQGVDKLRQKL 193 (210)
T ss_dssp EEECGGGSC--HHHHHHHHHHHHHHHGGGCS---CEEEEECBTTTTBSHHHHHHHH
T ss_pred EEecccCCC--chhHHHHHHHHHHHHHhcCC---CCceEEEeecCCCCHHHHHHHH
Confidence 999999873 22222223444555544432 3578999999999999998643
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.57 E-value=8.2e-15 Score=145.13 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=79.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~ 342 (519)
.++.++|+|+|++|+|||||+|+|++....... ...+.|.......+...
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~ 82 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS------------------------------PFQAEGLRPVMVSRTMG 82 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC------------------------------SSCC-CCCCEEEEEEET
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccC------------------------------CCCCcceeeEEEEEEEC
Confidence 356799999999999999999999964321111 11223333333445557
Q ss_pred CeEEEEEeCCCCCcchhhhhhcc---------ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hC---CCcEE
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGA---------TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG---VDQLI 409 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l---------~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~---~ppiI 409 (519)
+..++||||||+.+|......++ ..+|++|||+++.... +......++..+.. .+ ..|+|
T Consensus 83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-------~~~~~~~~~~~l~~~~~~~~~~~~i 155 (262)
T 3def_A 83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-------VDELDKQVVIAITQTFGKEIWCKTL 155 (262)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-------CCHHHHHHHHHHHHHHCGGGGGGEE
T ss_pred CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-------CCHHHHHHHHHHHHHhchhhhcCEE
Confidence 78999999999987654332222 2689999998877531 11222333333332 22 23599
Q ss_pred EEEeecccccccchhHH
Q 010071 410 VAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 410 VVvNKiDlv~~~~e~le 426 (519)
+|+||+|+.......++
T Consensus 156 vv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 156 LVLTHAQFSPPDELSYE 172 (262)
T ss_dssp EEEECTTCCCSTTCCHH
T ss_pred EEEeCcccCCCCCccHH
Confidence 99999999643333333
No 177
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.2e-15 Score=138.30 Aligned_cols=130 Identities=20% Similarity=0.195 Sum_probs=80.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|||||||+++|++..... .. ....++++. ....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~-------------------------~~~~~~~~~-------~~~~ 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TV-------------------------VSQEPLSAA-------DYDG 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------------------------------------CCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc---cc-------------------------ccCCCceee-------eecC
Confidence 456899999999999999999998542211 00 000011111 1145
Q ss_pred eEEEEEeCCCCCcchhhhhhcccc----CCeEEEEeecC-CCcccccccchhHHHHHHHHHHHH------hCCCcEEEEE
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQ----SDAAILVIDAS-VGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAV 412 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~----aD~vIlVVDas-~g~~e~~~~~l~~~~~e~l~ll~~------~~~ppiIVVv 412 (519)
..+.||||||+..+...+..++.. +|++|||+|++ .. .. +.....++..++.. .+.| ++||+
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~ 163 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP---KK---LTTTAEFLVDILSITESSCENGID-ILIAC 163 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH---HH---HHHHHHHHHHHHHHHHHHSTTCCC-EEEEE
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc---hh---HHHHHHHHHHHHhhhhhccccCCC-EEEEE
Confidence 678999999999887776666655 89999999998 33 11 22223333333322 2444 99999
Q ss_pred eecccccccchhHHHHHHHHHHHHH
Q 010071 413 NKMDAVQYSKDRFDSIKVQLGTFLR 437 (519)
Q Consensus 413 NKiDlv~~~~e~le~i~e~l~~~l~ 437 (519)
||+|+... ...+++.+.+...+.
T Consensus 164 nK~Dl~~~--~~~~~~~~~l~~~l~ 186 (193)
T 2ged_A 164 NKSELFTA--RPPSKIKDALESEIQ 186 (193)
T ss_dssp ECTTSTTC--CCHHHHHHHHHHHHH
T ss_pred EchHhcCC--CCHHHHHHHHHHHHH
Confidence 99999843 334455555554443
No 178
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.55 E-value=3e-14 Score=148.38 Aligned_cols=159 Identities=24% Similarity=0.250 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
..|+|+|.+|||||||+|+|++..... ....+.|.+.....+...+..+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~-------------------------------~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKV-------------------------------DTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC------------------------------------------CCSCEEEEEETTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccc-------------------------------cCCcccccCCEEEEEEECCEEE
Confidence 349999999999999999999542100 0012223222222334455789
Q ss_pred EEEeCCCCCcc--------hhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--CCcEEEEEeecc
Q 010071 347 VVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMD 416 (519)
Q Consensus 347 ~LiDTPG~~~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--~ppiIVVvNKiD 416 (519)
.+|||||+... ...+...+..+|++++|+|++.+.. ....+......++...+ ..|+|+|+||+|
T Consensus 229 ~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~-----~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~D 303 (364)
T 2qtf_A 229 MLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSEN-----LLIETLQSSFEILREIGVSGKPILVTLNKID 303 (364)
T ss_dssp EEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHH-----HHHHHHHHHHHHHHHHTCCSCCEEEEEECGG
T ss_pred EEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcc-----hHHHHHHHHHHHHHHhCcCCCCEEEEEECCC
Confidence 99999996321 1233456788999999999986510 01122223334444432 234999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+.... .......+..+.+.+.. .+..++++||++|+|+.++++.+
T Consensus 304 l~~~~---~~~~~~~~~~l~~~l~~--~~~~~~~~SA~~g~gi~~L~~~I 348 (364)
T 2qtf_A 304 KINGD---LYKKLDLVEKLSKELYS--PIFDVIPISALKRTNLELLRDKI 348 (364)
T ss_dssp GCCSC---HHHHHHHHHHHHHHHCS--CEEEEEECBTTTTBSHHHHHHHH
T ss_pred CCCch---HHHHHHHHHHHHHHhcC--CCCcEEEEECCCCcCHHHHHHHH
Confidence 97432 11222233233333311 13467999999999999998754
No 179
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.53 E-value=3.5e-14 Score=141.08 Aligned_cols=120 Identities=16% Similarity=0.123 Sum_probs=75.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~ 343 (519)
.+.++|+|+|.+|+|||||+|+|++........ ..+.+.......+...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~ 86 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP------------------------------FQSEGPRPVMVSRSRAG 86 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS------------------------------SSCCCSSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC------------------------------CCCcceeeEEEEEeeCC
Confidence 457899999999999999999999543211111 11222222223345567
Q ss_pred eEEEEEeCCCCCcchhh-------hhhc--cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH-hCC---CcEEE
Q 010071 344 YHVVVLDSPGHKDFVPN-------MISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV---DQLIV 410 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~-------~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~~---ppiIV 410 (519)
..+.||||||+.++... +..+ ...+|++|||+|+.... +.....+++..+.. .+. .|+|+
T Consensus 87 ~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-------~~~~~~~~~~~l~~~~~~~~~~~iiv 159 (270)
T 1h65_A 87 FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-------VDNLDKLVAKAITDSFGKGIWNKAIV 159 (270)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-------CCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred eEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCc-------CCHHHHHHHHHHHHHhCcccccCEEE
Confidence 89999999998765421 1111 24699999998886431 22233334443332 232 35999
Q ss_pred EEeecccccc
Q 010071 411 AVNKMDAVQY 420 (519)
Q Consensus 411 VvNKiDlv~~ 420 (519)
|+||+|+...
T Consensus 160 V~nK~Dl~~~ 169 (270)
T 1h65_A 160 ALTHAQFSPP 169 (270)
T ss_dssp EEECCSCCCG
T ss_pred EEECcccCCc
Confidence 9999999753
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.51 E-value=1.3e-14 Score=146.47 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=49.4
Q ss_pred CCeEEEEEeCCCCCc-------------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcE
Q 010071 342 KNYHVVVLDSPGHKD-------------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 408 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~-------------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppi 408 (519)
....++||||||+.. +...+..++..+|++|||+|+.... +. ......++..+...+.| +
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~----~~--~~~~~~i~~~~~~~~~~-~ 201 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD----LA--NSDALQLAKEVDPEGKR-T 201 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC----ST--TCSHHHHHHHHCSSCSS-E
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc----hh--hhHHHHHHHHhCCCCCc-E
Confidence 457899999999754 4556677888999999999974321 10 01223445555555555 9
Q ss_pred EEEEeecccccc
Q 010071 409 IVAVNKMDAVQY 420 (519)
Q Consensus 409 IVVvNKiDlv~~ 420 (519)
|+|+||+|+...
T Consensus 202 i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 202 IGVITKLDLMDK 213 (315)
T ss_dssp EEEEECTTSSCS
T ss_pred EEEEcCcccCCc
Confidence 999999999853
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.50 E-value=3.1e-14 Score=159.96 Aligned_cols=114 Identities=20% Similarity=0.213 Sum_probs=72.5
Q ss_pred eEEEEEeCCCCCc---chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHH-HHHHHhCCCcEEEEEeeccccc
Q 010071 344 YHVVVLDSPGHKD---FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 344 ~~l~LiDTPG~~~---f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l-~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
..++||||||+.. ....+..++..+|++|||+|++.+. .......+ ..+...+.| +|+|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~--------s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC--------TLGERRYLENYIKGRGLT-VFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT--------CHHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc--------chhHHHHHHHHHHhhCCC-EEEEEECccccc
Confidence 4699999999554 4556677889999999999998762 22222222 233444555 999999999974
Q ss_pred cc---ch---hHHH----HHHHHHHHHHhc----CCCCCCceEEEeccc--------------cCCCcccccccc
Q 010071 420 YS---KD---RFDS----IKVQLGTFLRSC----GFKDASLTWIPLSAL--------------ENQNLVTAPDDG 466 (519)
Q Consensus 420 ~~---~e---~le~----i~e~l~~~l~~~----g~~~~~i~~IpvSA~--------------tGegI~el~~~i 466 (519)
.. .+ .++. +.+.+...+... |+......+++|||+ +|.|+.+++..+
T Consensus 245 ~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L 319 (695)
T 2j69_A 245 ESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSL 319 (695)
T ss_dssp GGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHH
T ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHH
Confidence 32 11 2222 222222223221 221223478999999 999999997654
No 182
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=3.9e-14 Score=147.31 Aligned_cols=161 Identities=18% Similarity=0.221 Sum_probs=77.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC-
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~- 343 (519)
..++|+|+|++|+|||||+++|++........ .........+.+++......+...+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~----------------------~~~~~~~~~~ti~~~~~~~~~~~~~~ 93 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV----------------------IPGAAEKIERTVQIEASTVEIEERGV 93 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC-------------------------------------CEEEEEEEEC----CE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCc----------------------ccCCCcccCCceeEEEEEEEeecCCc
Confidence 45789999999999999999987532211000 0000011112233322222233333
Q ss_pred -eEEEEEeCCCC-------Ccchhhhh-------hcccc-------------CCeEEEEeecCCCcccccccchhHHHHH
Q 010071 344 -YHVVVLDSPGH-------KDFVPNMI-------SGATQ-------------SDAAILVIDASVGSFEVGMNTAKGLTRE 395 (519)
Q Consensus 344 -~~l~LiDTPG~-------~~f~~~~~-------~~l~~-------------aD~vIlVVDas~g~~e~~~~~l~~~~~e 395 (519)
..++||||||+ +.|..... .++.. +|++||+|+.... + +.....+
T Consensus 94 ~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~----~---l~~~d~~ 166 (361)
T 2qag_A 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH----G---LKPLDVA 166 (361)
T ss_dssp EEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSS----S---CCHHHHH
T ss_pred ccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCC----C---cchhHHH
Confidence 47899999998 44443332 22222 4578888876322 1 3334434
Q ss_pred HHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010071 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 396 ~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
++..+. .++| +|+|+||+|+.. ...+...++.+...++..+ ++++++||++|.| .+.|.
T Consensus 167 ~~~~l~-~~~p-iIlV~NK~Dl~~--~~ev~~~k~~i~~~~~~~~-----i~~~~~Sa~~~~~-~e~~~ 225 (361)
T 2qag_A 167 FMKAIH-NKVN-IVPVIAKADTLT--LKERERLKKRILDEIEEHN-----IKIYHLPDAESDE-DEDFK 225 (361)
T ss_dssp HHHHTC-S-SC-EEEEEECCSSSC--HHHHHHHHHHHHHHTTCC------CCSCCCC----------CH
T ss_pred HHHHhc-cCCC-EEEEEECCCCCC--HHHHHHHHHHHHHHHHHCC-----CCEEeCCCcCCCc-chhHH
Confidence 444332 3345 999999999983 3444455566666665554 4679999999998 66554
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.47 E-value=5.7e-14 Score=147.94 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=25.1
Q ss_pred eEEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCC
Q 010071 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (519)
Q Consensus 344 ~~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g 380 (519)
..+.||||||+.. ....++.+++.+|++|+|+|+..+
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 5799999999754 223345678899999999999874
No 184
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.45 E-value=8.5e-14 Score=144.17 Aligned_cols=110 Identities=20% Similarity=0.213 Sum_probs=72.2
Q ss_pred cCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010071 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 340 ~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
...+..++||||||..... ...+..+|++|+|+|+..+... ..+. ..+ ...| +|||+||+|+..
T Consensus 168 ~~~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~---~~l~---~~~------~~~p-~ivVlNK~Dl~~ 231 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQL---QGIK---KGV------LELA-DIVVVNKADGEH 231 (355)
T ss_dssp HHTTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTT---TTCC---TTS------GGGC-SEEEEECCCGGG
T ss_pred hhCCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccH---HHHH---HhH------hhcC-CEEEEECCCCcC
Confidence 3457899999999954422 2334789999999998765211 1111 101 1224 899999999973
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCC--CceEEEeccccCCCccccccccc
Q 010071 420 YSKDRFDSIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 420 ~~~e~le~i~e~l~~~l~~~g~~~~--~i~~IpvSA~tGegI~el~~~i~ 467 (519)
....+....++...+..++.... ..+++++||++|+||.++++.+.
T Consensus 232 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~ 279 (355)
T 3p32_A 232 --HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVE 279 (355)
T ss_dssp --HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHH
Confidence 33444555666666655432211 35789999999999999987653
No 185
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.43 E-value=1.6e-13 Score=141.76 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=64.4
Q ss_pred CeEEEEEeCCCCCc-------------chhhhhhccccCC-eEEEEeecCCCcccccccchhHHH-HHHHHHHHHhCCCc
Q 010071 343 NYHVVVLDSPGHKD-------------FVPNMISGATQSD-AAILVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVDQ 407 (519)
Q Consensus 343 ~~~l~LiDTPG~~~-------------f~~~~~~~l~~aD-~vIlVVDas~g~~e~~~~~l~~~~-~e~l~ll~~~~~pp 407 (519)
...++||||||... +...+..++..++ ++++|++++.. +.... ..++..+...+.|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--------~~~~~~~~i~~~~~~~~~~- 199 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--------LANSDALKVAKEVDPQGQR- 199 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--------GGGCHHHHHHHHHCTTCTT-
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--------cchhHHHHHHHHhCcCCCc-
Confidence 46899999999532 3344555665554 55667777654 11111 2244444444555
Q ss_pred EEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 408 iIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+|+|+||+|+...... .. +.+...+ .........++++||++|.|+.++++.+.
T Consensus 200 ~i~V~NK~Dl~~~~~~-~~---~~~~~~~--~~l~~~~~~v~~~SA~~~~~i~~l~~~l~ 253 (353)
T 2x2e_A 200 TIGVITKLDLMDEGTD-AR---DVLENKL--LPLRRGYIGVVNRSQKDIDGKKDITAALA 253 (353)
T ss_dssp EEEEEECGGGSCTTCC-CH---HHHTTCS--SCCTTCEEECCCCCHHHHHTTCCHHHHHH
T ss_pred eEEEeccccccCcchh-HH---HHHhCCc--ccccCCceEEEeCCcccccccccHHHHHH
Confidence 9999999999853221 11 1111110 11111124578999999999999987653
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.42 E-value=2.1e-13 Score=144.41 Aligned_cols=154 Identities=20% Similarity=0.262 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCC-CeE
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYH 345 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~-~~~ 345 (519)
..|+|+|++|||||||+++|++....+... .+ ....+ .... +... ...
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~-----------------~f------tTl~p------~~G~--V~~~~~~~ 206 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY-----------------PF------TTLSP------NLGV--VEVSEEER 206 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCC-----------------TT------CSSCC------EEEE--EECSSSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCc-----------------cc------ceecc------eeeE--EEecCcce
Confidence 459999999999999999998543211000 00 00011 1111 2223 368
Q ss_pred EEEEeCCCCCcc-------hhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010071 346 VVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 346 l~LiDTPG~~~f-------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
++++||||+... ...+...+..++.+|+|+|++ . ..+..+.....++..+...+...|.|+|+||+|+.
T Consensus 207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~---~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-D---EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-S---CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-c---CCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 999999997542 223344566799999999997 2 22333444455555554433223488999999987
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 419 ~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.. .. .+.+...++..+ +++|++||++++||.+++..+
T Consensus 283 ~~--~~----~~~l~~~l~~~g-----~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 283 EE--EA----VKALADALAREG-----LAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CH--HH----HHHHHHHHHTTT-----SCEEECCTTTCTTHHHHHHHH
T ss_pred hH--HH----HHHHHHHHHhcC-----CeEEEEECCCccCHHHHHHHH
Confidence 42 22 333444444333 478999999999999998754
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.41 E-value=1.9e-13 Score=141.40 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=69.0
Q ss_pred CCeEEEEEeCCCCCcc-------------hhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcE
Q 010071 342 KNYHVVVLDSPGHKDF-------------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 408 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f-------------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppi 408 (519)
....++||||||+.++ ...+..++..+|++|+|+|+..... .......++..+...+.+ +
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~------~~~~~~~l~~~~~~~~~~-~ 206 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL------ATSDAIKISREVDPSGDR-T 206 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG------GGCHHHHHHHHSCTTCTT-E
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc------CCHHHHHHHHHhcccCCC-E
Confidence 3557999999998776 5666778899999999998764310 112233344444444555 9
Q ss_pred EEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010071 409 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 409 IVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
|+|+||+|+....... .+.+... .. .....|+++|++++.++.+.+.
T Consensus 207 i~V~nK~Dl~~~~~~~----~~~~~~~----~~-~~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 207 FGVLTKIDLMDKGTDA----VEILEGR----SF-KLKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp EEEEECGGGCCTTCCS----HHHHTTS----SS-CCSSCCEEECCCCHHHHHTTCC
T ss_pred EEEEeCCccCCCcccH----HHHHcCc----cc-cccCCeEEEEECChHHhccCCC
Confidence 9999999998532221 1112211 11 1235789999999999887653
No 188
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.39 E-value=5.9e-13 Score=126.85 Aligned_cols=102 Identities=9% Similarity=0.100 Sum_probs=63.6
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~ 421 (519)
.+..++||||+|+...... .....+.+|+|+|+..+. .... . +....+.| +++|+||+|+....
T Consensus 107 ~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~--------~~~~-~---~~~~~~~~-~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGD--------DVVE-K---HPEIFRVA-DLIVINKVALAEAV 170 (221)
T ss_dssp TTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCT--------THHH-H---CHHHHHTC-SEEEEECGGGHHHH
T ss_pred CCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcc--------hhhh-h---hhhhhhcC-CEEEEecccCCcch
Confidence 4578999999996211111 112578899999998651 1111 1 11223455 79999999997421
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 422 ~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
...++.+.+.+. ..+ ..++++++||++|+|+.++++.+
T Consensus 171 ~~~~~~~~~~~~----~~~---~~~~i~~~Sa~~g~gi~~l~~~l 208 (221)
T 2wsm_A 171 GADVEKMKADAK----LIN---PRAKIIEMDLKTGKGFEEWIDFL 208 (221)
T ss_dssp TCCHHHHHHHHH----HHC---TTSEEEECBTTTTBTHHHHHHHH
T ss_pred hhHHHHHHHHHH----HhC---CCCeEEEeecCCCCCHHHHHHHH
Confidence 123344444433 332 24688999999999999998754
No 189
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.38 E-value=4e-13 Score=147.05 Aligned_cols=79 Identities=23% Similarity=0.241 Sum_probs=54.8
Q ss_pred eEEEEEeCCCCCc-----------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEE
Q 010071 344 YHVVVLDSPGHKD-----------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (519)
Q Consensus 344 ~~l~LiDTPG~~~-----------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVv 412 (519)
..++||||||+.. |...+..++..+|++|+|+|+.... .......++..+...+.| +|+|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~-------~~~~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLE-------ISDEFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCC-------CCHHHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC-------CCHHHHHHHHHHHhcCCC-EEEEE
Confidence 3689999999765 5556667788899999999998631 223445555555555555 99999
Q ss_pred eecccccccchhHHHHHHHH
Q 010071 413 NKMDAVQYSKDRFDSIKVQL 432 (519)
Q Consensus 413 NKiDlv~~~~e~le~i~e~l 432 (519)
||+|++. ...+..+...+
T Consensus 226 NK~Dl~~--~~el~~~~~~l 243 (550)
T 2qpt_A 226 NKADMVE--TQQLMRVYGAL 243 (550)
T ss_dssp ECGGGSC--HHHHHHHHHHH
T ss_pred ECCCccC--HHHHHHHHHHh
Confidence 9999983 34444444444
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.37 E-value=7.1e-13 Score=137.15 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=62.9
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010071 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
..+..++|+||||..... ......+|++++|+|+..+.. .+. ... ..+..| .|+|+||+|+..
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~------~~~-i~~-----~il~~~-~ivVlNK~Dl~~- 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDE------LQG-IKR-----GIIEMA-DLVAVTKSDGDL- 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC------------------------CCSC-SEEEECCCSGGG-
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchh------HHH-hHH-----HHHhcC-CEEEEeeecCCC-
Confidence 356789999999964222 223567999999999986511 100 100 112445 789999999973
Q ss_pred cchhHHHHHHHHHHHHHhcCCC--CCCceEEEeccccCCCccccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~--~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
..........+...++..... ....+++++||++|+|+.++++.+.
T Consensus 227 -~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~ 274 (349)
T 2www_A 227 -IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMK 274 (349)
T ss_dssp -HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHH
Confidence 222222233343333322110 1135789999999999999987653
No 191
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.36 E-value=1.1e-12 Score=135.24 Aligned_cols=109 Identities=19% Similarity=0.111 Sum_probs=68.6
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010071 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
..+..++||||||+.++... ....+|++|+|+|+..+.. +..+.. . ..+.| +++|+||+|+..
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~---~~~l~~------~---~~~~p-~ivv~NK~Dl~~- 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDD---LQGIKK------G---LMEVA-DLIVINKDDGDN- 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC---------CCCCH------H---HHHHC-SEEEECCCCTTC-
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHH---HHHHHH------h---hhccc-CEEEEECCCCCC-
Confidence 45789999999998765543 3578999999999986521 111110 0 11234 799999999973
Q ss_pred cchhHHHHHHHHHHHHHhcCCCC--CCceEEEeccccCCCccccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~~--~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
...+....+.+...+..++... ...+++++||++|+|+.++++.+.
T Consensus 209 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~ 256 (341)
T 2p67_A 209 -HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAII 256 (341)
T ss_dssp -HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHH
Confidence 2233444445555544433210 124789999999999999987654
No 192
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.32 E-value=6.9e-13 Score=149.32 Aligned_cols=110 Identities=11% Similarity=0.078 Sum_probs=68.8
Q ss_pred CeEEEEEeCCCCCc-------------chhhhhhcc-ccCCeEEEEeecCCCcccccccchhHHH-HHHHHHHHHhCCCc
Q 010071 343 NYHVVVLDSPGHKD-------------FVPNMISGA-TQSDAAILVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVDQ 407 (519)
Q Consensus 343 ~~~l~LiDTPG~~~-------------f~~~~~~~l-~~aD~vIlVVDas~g~~e~~~~~l~~~~-~e~l~ll~~~~~pp 407 (519)
...++|+||||... +...+..++ ..+|++++|+|++.+. .... ..++..+...+.|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~--------~~~d~l~ll~~L~~~g~p- 219 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--------ANSDALKIAKEVDPQGQR- 219 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCS--------SSCHHHHHHHHHCTTCSS-
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCc--------chhHHHHHHHHHHhcCCC-
Confidence 45799999999543 222334444 4689999999999762 1222 2455555555666
Q ss_pred EEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccccccc
Q 010071 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 408 iIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
+|+|+||+|++..... ...+. .. +...+.....+++++||++|.|+.++.+.+.
T Consensus 220 vIlVlNKiDlv~~~~~-~~~il---~~--~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~ 273 (772)
T 3zvr_A 220 TIGVITKLDLMDEGTD-ARDVL---EN--KLLPLRRGYIGVVNRSQKDIDGKKDITAALA 273 (772)
T ss_dssp EEEEEECTTSSCTTCC-SHHHH---TT--CSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred EEEEEeCcccCCcchh-hHHHH---HH--HhhhhhccCCceEEecccccccchhHHHHHH
Confidence 9999999999853221 11111 10 0111111224678999999999999987764
No 193
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.32 E-value=1.6e-12 Score=134.81 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=86.0
Q ss_pred EEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcc----cccccchhHHHHHHHHHHHH--hCCCcEE
Q 010071 336 VAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSF----EVGMNTAKGLTREHAQLIRS--FGVDQLI 409 (519)
Q Consensus 336 ~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~----e~~~~~l~~~~~e~l~ll~~--~~~ppiI 409 (519)
...+......+.||||+|++.+...+..++..++++|||+|.+.... ......+.....++..++.. +...|+|
T Consensus 185 ~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii 264 (353)
T 1cip_A 185 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 264 (353)
T ss_dssp EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence 34455568899999999999999999999999999999999996310 00022333444444344432 2234599
Q ss_pred EEEeeccccccc---------------chhHHHHHHHHHHHHHhcCC--CCCCceEEEeccccCCCcccccccc
Q 010071 410 VAVNKMDAVQYS---------------KDRFDSIKVQLGTFLRSCGF--KDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 410 VVvNKiDlv~~~---------------~e~le~i~e~l~~~l~~~g~--~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
||+||+|+.... ....++..+.+......+.. ....+.++++||++|+||.++|..+
T Consensus 265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 999999986311 11233344444333223321 1245789999999999999999754
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.31 E-value=3.5e-12 Score=129.31 Aligned_cols=163 Identities=17% Similarity=0.165 Sum_probs=76.3
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEE--EEeecCC
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA--VAYFDSK 342 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~--~~~~~~~ 342 (519)
-.++|+|+|+.|||||||+++|.+........ +. . .+. .....+..... .......
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~-~------~g~--------------~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV-IS-G------AAE--------------KIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC----------------------------------------------CEEEEC---C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cc-c------CCc--------------ccCCcceEeeEEEEecCCCc
Confidence 45789999999999999999988531111110 00 0 000 00000000000 1111223
Q ss_pred CeEEEEEeCCCC-------Ccchhhhh-------hccc-------------cCCeEEEEeecCCCcccccccchhHHHHH
Q 010071 343 NYHVVVLDSPGH-------KDFVPNMI-------SGAT-------------QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (519)
Q Consensus 343 ~~~l~LiDTPG~-------~~f~~~~~-------~~l~-------------~aD~vIlVVDas~g~~e~~~~~l~~~~~e 395 (519)
...+++|||||+ +.+..... .++. .++++||+++.+.. + +.....+
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~----~---Ld~~~~~ 147 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH----G---LKPLDVA 147 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS----S---CCHHHHH
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc----C---CCHHHHH
Confidence 467899999997 44433221 2221 24456666665432 1 2223333
Q ss_pred HHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 396 ~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
++..+. ... ++++|+||.|+.. ...+...++++..+++..++ .|+++||++| |+.++|..+
T Consensus 148 ~l~~l~-~~~-~iilV~~K~Dl~~--~~e~~~~~~~~~~~~~~~~~-----~~~e~Sa~~~-~v~e~f~~l 208 (301)
T 2qnr_A 148 FMKAIH-NKV-NIVPVIAKADTLT--LKERERLKKRILDEIEEHNI-----KIYHLPDAES-DEDEDFKEQ 208 (301)
T ss_dssp HHHHHT-TTS-CEEEEECCGGGSC--HHHHHHHHHHHHHHHHHTTC-----CCCCCC----------CHHH
T ss_pred HHHHHH-hcC-CEEEEEEeCCCCC--HHHHHHHHHHHHHHHHHcCC-----eEEecCCccc-cccHHHHHH
Confidence 333332 123 4999999999973 33344455677777777664 6699999999 999998643
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.30 E-value=1e-11 Score=121.49 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=65.7
Q ss_pred eEEEEEeCCCCCcchhh------hhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010071 344 YHVVVLDSPGHKDFVPN------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~------~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
+.++||||||+.++... +...+.. +++|+|+|+........ +..............+.| +++|+||+|+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~---~~~~~~~~~~~~~~~~~p-~~iv~NK~D~ 183 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPND---YCFVRFFALLIDLRLGAT-TIPALNKVDL 183 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHH---HHHHHHHHHHHHHHHTSC-EEEEECCGGG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHH---HHHHHHHHHHHhcccCCC-eEEEEecccc
Confidence 57999999998765322 2235566 89999999875421111 111111111223334556 8999999998
Q ss_pred ccccchhHHHHHHHH---HH---------------------HHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 418 VQYSKDRFDSIKVQL---GT---------------------FLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 418 v~~~~e~le~i~e~l---~~---------------------~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
... ...+.+.+.+ .. +++.++. .++++++||++|+|+.++++.+
T Consensus 184 ~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~SA~~~~gi~~l~~~i 251 (262)
T 1yrb_A 184 LSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP---PVRVLYLSAKTREGFEDLETLA 251 (262)
T ss_dssp CCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC---CCCCEECCTTTCTTHHHHHHHH
T ss_pred ccc--ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC---cccceEEEecCcccHHHHHHHH
Confidence 742 2122222211 11 1233332 2367999999999999998644
No 196
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.30 E-value=3.8e-12 Score=132.45 Aligned_cols=130 Identities=15% Similarity=0.128 Sum_probs=76.7
Q ss_pred EeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCc---ccc-cccchhHHHHHHHHHHHH--hCCCcEEE
Q 010071 337 AYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEV-GMNTAKGLTREHAQLIRS--FGVDQLIV 410 (519)
Q Consensus 337 ~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~---~e~-~~~~l~~~~~e~l~ll~~--~~~ppiIV 410 (519)
..+...+..+.||||+|++.+...+..++..++++|||+|.+... .+. ....+......+..++.. +...|+||
T Consensus 194 ~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piIL 273 (362)
T 1zcb_A 194 YDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIIL 273 (362)
T ss_dssp EEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEE
T ss_pred EEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEE
Confidence 345556789999999999999999999999999999999999620 000 022233333333344432 22345999
Q ss_pred EEeeccccccc----------------chhHHHHHHHHHHHHHhc-CCC-CCCceEEEeccccCCCcccccccc
Q 010071 411 AVNKMDAVQYS----------------KDRFDSIKVQLGTFLRSC-GFK-DASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 411 VvNKiDlv~~~----------------~e~le~i~e~l~~~l~~~-g~~-~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+||+|+.... ....++..+.+...+..+ ... ...+.++++||++|+||.++|..+
T Consensus 274 v~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 274 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp EEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred EEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 99999986311 022333333332222222 111 235788999999999999999754
No 197
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.27 E-value=3.5e-12 Score=130.92 Aligned_cols=134 Identities=12% Similarity=0.043 Sum_probs=88.4
Q ss_pred EEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCc----ccccccchhHHHHHHHHHHHH--hCCC
Q 010071 333 TVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS----FEVGMNTAKGLTREHAQLIRS--FGVD 406 (519)
Q Consensus 333 ~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~----~e~~~~~l~~~~~e~l~ll~~--~~~p 406 (519)
.+....+...+..+.||||+|++.+...+..+++.++++|||+|.+.-. ...+.+.+.....++..++.. ....
T Consensus 156 Gi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 156 GIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp SEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred eEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 3344556667899999999999999999999999999999999876110 001223343444444444432 2223
Q ss_pred cEEEEEeeccccccc----------------chhHHHHHHHHHHHHHhcC-CCCCCceEEEeccccCCCcccccccc
Q 010071 407 QLIVAVNKMDAVQYS----------------KDRFDSIKVQLGTFLRSCG-FKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 407 piIVVvNKiDlv~~~----------------~e~le~i~e~l~~~l~~~g-~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+||++||+|+.... ....++..+.+........ .....+.++++||+++.||..+|..+
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 599999999986421 1233444444443333322 22345788999999999999999865
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=130.83 Aligned_cols=162 Identities=17% Similarity=0.208 Sum_probs=79.1
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec--CC
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SK 342 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~--~~ 342 (519)
-.++|+|+|++|+|||||+++|++........ +.... . .. ..+........+. ..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~------------~~~~~------~---~~--~t~~~~~i~~v~q~~~~ 86 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEY------------PGPSH------R---IK--KTVQVEQSKVLIKEGGV 86 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCC------------CSCC----------------CCEEEEEECC------
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCC------------CCccc------C---Cc--cceeeeeEEEEEecCCc
Confidence 45789999999999999999999643211110 00000 0 00 0011111111111 12
Q ss_pred CeEEEEEeCCCCCcchh------hh-------------------hhcccc--CCeEEEEeecC-CCcccccccchhHHHH
Q 010071 343 NYHVVVLDSPGHKDFVP------NM-------------------ISGATQ--SDAAILVIDAS-VGSFEVGMNTAKGLTR 394 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~------~~-------------------~~~l~~--aD~vIlVVDas-~g~~e~~~~~l~~~~~ 394 (519)
...+++|||||+..+.. .+ ...+.. ++++||+++.+ .+ +.....
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~--------L~~~d~ 158 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG--------LKPLDI 158 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCS--------CCHHHH
T ss_pred ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccC--------CCHHHH
Confidence 34789999999765421 00 112233 45567776665 34 333444
Q ss_pred HHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 395 e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+++..+.. +++ +|+|+||+|+. ....+...++.+...+...++ .++++||.+++++.++|..+
T Consensus 159 ~~lk~L~~-~v~-iIlVinK~Dll--~~~ev~~~k~~i~~~~~~~~i-----~~~~~sa~~~~~v~~~~~~l 221 (418)
T 2qag_C 159 EFMKRLHE-KVN-IIPLIAKADTL--TPEECQQFKKQIMKEIQEHKI-----KIYEFPETDDEEENKLVKKI 221 (418)
T ss_dssp HHHHHHTT-TSE-EEEEEESTTSS--CHHHHHHHHHHHHHHHHHHTC-----CCCCCC--------------
T ss_pred HHHHHHhc-cCc-EEEEEEcccCc--cHHHHHHHHHHHHHHHHHcCC-----eEEeCCCCCCcCHHHHHHHH
Confidence 44444443 455 99999999998 445566666777788777764 56899999999998876543
No 199
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.22 E-value=6.1e-12 Score=129.69 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=88.5
Q ss_pred EEEEEEEeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCc----ccccccchhHHHHHHHHHHHH--hC
Q 010071 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS----FEVGMNTAKGLTREHAQLIRS--FG 404 (519)
Q Consensus 331 T~~~~~~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~----~e~~~~~l~~~~~e~l~ll~~--~~ 404 (519)
|+.+....+...+..+.||||+|++.|...+..+++.++++|||+|.+.-. ...+...+.....++..++.. ..
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred eeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 333445556677899999999999999999999999999999999998210 001223344444444444443 22
Q ss_pred CCcEEEEEeeccccccc---------------chhHHHHHHHHHHHH------HhcCCCC------------CCceEEEe
Q 010071 405 VDQLIVAVNKMDAVQYS---------------KDRFDSIKVQLGTFL------RSCGFKD------------ASLTWIPL 451 (519)
Q Consensus 405 ~ppiIVVvNKiDlv~~~---------------~e~le~i~e~l~~~l------~~~g~~~------------~~i~~Ipv 451 (519)
..|+||++||+|+.... ....++..+.+.... ....... ..+.++++
T Consensus 228 ~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~T 307 (340)
T 4fid_A 228 GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPT 307 (340)
T ss_dssp TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEE
T ss_pred CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEE
Confidence 33599999999986311 012333334443333 2211111 24788999
Q ss_pred ccccCCCcccccccc
Q 010071 452 SALENQNLVTAPDDG 466 (519)
Q Consensus 452 SA~tGegI~el~~~i 466 (519)
||+.+.||..+|..+
T Consensus 308 sA~dt~nv~~vF~~v 322 (340)
T 4fid_A 308 NATDGSNIKRVFMLA 322 (340)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred EeeCcHHHHHHHHHH
Confidence 999999999999865
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.19 E-value=9.2e-12 Score=130.08 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=77.9
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
-..+|+|||.||||||||+|+|++....+ ...++.|++.....+...+.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v-------------------------------~~~pftT~~~~~g~~~~~~~ 119 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEA-------------------------------AEYEFTTLVTVPGVIRYKGA 119 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCG-------------------------------GGTCSSCCCEEEEEEEETTE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcc-------------------------------cCCCCceeeeeeEEEEeCCc
Confidence 34689999999999999999999643221 11134455445555667888
Q ss_pred EEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccc
Q 010071 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (519)
Q Consensus 345 ~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDl 417 (519)
+++|+||||... ....++..++.+|++++|+|+..+. ........++..+...+..+|.++++||+|.
T Consensus 120 ~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~-----~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 120 KIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL-----HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH-----HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred EEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH-----HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999532 3345677788999999999998651 1111122222222122233457899999996
Q ss_pred c
Q 010071 418 V 418 (519)
Q Consensus 418 v 418 (519)
.
T Consensus 195 ~ 195 (376)
T 4a9a_A 195 G 195 (376)
T ss_dssp S
T ss_pred h
Confidence 3
No 201
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.16 E-value=3.3e-11 Score=125.31 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=29.3
Q ss_pred eEEEEEeCCCCCcch-------hhhhhccccCCeEEEEeecCC
Q 010071 344 YHVVVLDSPGHKDFV-------PNMISGATQSDAAILVIDASV 379 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~-------~~~~~~l~~aD~vIlVVDas~ 379 (519)
..+.||||||+..+. ..++.+++.+|++|+|+|+..
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 479999999987753 334556889999999999986
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.11 E-value=1.6e-10 Score=110.30 Aligned_cols=100 Identities=10% Similarity=0.062 Sum_probs=58.6
Q ss_pred eEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccch
Q 010071 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e 423 (519)
..+.++|++|...... ..-...+..+.|+|+..+.. ..... . ...+.| +++|+||+|+......
T Consensus 119 ~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~------~~~~~---~---~~~~~~-~iiv~NK~Dl~~~~~~ 182 (226)
T 2hf9_A 119 IDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDD------TIEKH---P---GIMKTA-DLIVINKIDLADAVGA 182 (226)
T ss_dssp CSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTT------TTTTC---H---HHHTTC-SEEEEECGGGHHHHTC
T ss_pred CCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchh------hHhhh---h---hHhhcC-CEEEEeccccCchhHH
Confidence 4789999999522211 11233566788888754311 00000 1 113445 7999999998742112
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 424 ~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.++.+. ..++..+ ..++++++||++|+|+.++|+.+
T Consensus 183 ~~~~~~----~~~~~~~---~~~~~~~~Sa~~g~gv~~l~~~l 218 (226)
T 2hf9_A 183 DIKKME----NDAKRIN---PDAEVVLLSLKTMEGFDKVLEFI 218 (226)
T ss_dssp CHHHHH----HHHHHHC---TTSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHH----HHHHHhC---CCCeEEEEEecCCCCHHHHHHHH
Confidence 233333 3333332 23588999999999999998754
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.09 E-value=8.9e-11 Score=122.36 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCCcc-------hhhhhhccccCCeEEEEeecCC
Q 010071 343 NYHVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASV 379 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f-------~~~~~~~l~~aD~vIlVVDas~ 379 (519)
...+.||||||+..+ ...++.+++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 357999999997664 3445667899999999999985
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.06 E-value=5.1e-10 Score=115.17 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=62.8
Q ss_pred CCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccc
Q 010071 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (519)
Q Consensus 341 ~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~ 420 (519)
..+..++|+||||...-.. .....+|++++|+|+..+.. ...+.. .. . ..+ .++++||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~---~~~i~~---~i---~---~~~-~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDE---LQGIKK---GI---F---ELA-DMIAVNKADDGDG 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC---------CCT---TH---H---HHC-SEEEEECCSTTCC
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCccc---HHHHHH---HH---h---ccc-cEEEEEchhccCc
Confidence 3578999999999654222 12367999999999875411 100100 00 1 113 4777899997631
Q ss_pred cchhHHHHHHHHHHHHHhcCCC--CCCceEEEeccccCCCccccccccc
Q 010071 421 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVTAPDDGI 467 (519)
Q Consensus 421 ~~e~le~i~e~l~~~l~~~g~~--~~~i~~IpvSA~tGegI~el~~~i~ 467 (519)
.......++.+...+...... ....+++++||++|.|+.++.+.+.
T Consensus 209 -~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 209 -ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp -HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 122222334444433222210 0024679999999999999987653
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=4.2e-10 Score=117.21 Aligned_cols=150 Identities=14% Similarity=0.135 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.+|+++|.+|+|||||+|+|++..... .........+|+|.......+.. .+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~-------------------------~~~~~~~~~~gtT~~~~~~~~~~---~~ 214 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGK-------------------------GNVITTSYFPGTTLDMIEIPLES---GA 214 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHT-------------------------TCCCEEEECTTSSCEEEEEECST---TC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCC-------------------------ccceeecCCCCeEEeeEEEEeCC---Ce
Confidence 579999999999999999999642100 00111223355665554444332 38
Q ss_pred EEEeCCCCCcch-------hhhhhcc---ccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010071 347 VVLDSPGHKDFV-------PNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 347 ~LiDTPG~~~f~-------~~~~~~l---~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
.|+||||..... ...+..+ ...+.++|++++....+..++.. +.++...+.| +++++||+|
T Consensus 215 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------l~~l~~~~~~-~~~v~~k~d 285 (369)
T 3ec1_A 215 TLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR--------LDYIKGGRRS-FVCYMANEL 285 (369)
T ss_dssp EEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEE-EEEEECTTS
T ss_pred EEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE--------EEEccCCCce-EEEEecCCc
Confidence 999999954321 1122223 66899999999964422222211 1112223444 999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccc
Q 010071 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~ 463 (519)
.+. ....+...+.+++.+ |. .++|.++....++.++.
T Consensus 286 ~~~--~~~~~~~~~~~~~~~---g~-----~l~p~~~~~~~~~~~l~ 322 (369)
T 3ec1_A 286 TVH--RTKLEKADSLYANQL---GE-----LLSPPSKRYAAEFPPLV 322 (369)
T ss_dssp CEE--EEEGGGHHHHHHHHB---TT-----TBCSSCGGGTTTCCCEE
T ss_pred ccc--cccHHHHHHHHHHhc---CC-----ccCCCCchhhhhccCcE
Confidence 883 344444455554443 32 34777777777776654
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.84 E-value=8.9e-09 Score=109.03 Aligned_cols=137 Identities=19% Similarity=0.252 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCC--
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~-- 343 (519)
.++|+|+|++|+|||||+|.|++.... ...+ ....++.+.......+....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~--g~~~-------------------------~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFE--GEPA-------------------------THTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC----------------------------------CCSSCEEEEEEEEEEC--CE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcccc--CCcC-------------------------CCCCccceEeeEEEEeecCccc
Confidence 466999999999999999999965210 0000 00001122211111122222
Q ss_pred eEEEEEeCCCCCcchh--------------h----hhhc---------ccc--CC-eEEEEeecCCCcccccccchhHHH
Q 010071 344 YHVVVLDSPGHKDFVP--------------N----MISG---------ATQ--SD-AAILVIDASVGSFEVGMNTAKGLT 393 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~--------------~----~~~~---------l~~--aD-~vIlVVDas~g~~e~~~~~l~~~~ 393 (519)
..++++|+||...... . +... +.. +| +++||+|+..+ +....
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--------l~~~D 166 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--------LKSLD 166 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----------CHHH
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--------CCHHH
Confidence 3789999999643210 0 1111 112 23 46678888766 44555
Q ss_pred HHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCC
Q 010071 394 REHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (519)
Q Consensus 394 ~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~ 441 (519)
.+++..+. .++ ++|+|+||+|.+ ....+..++..+...++..|+
T Consensus 167 ieilk~L~-~~~-~vI~Vi~KtD~L--t~~E~~~l~~~I~~~L~~~gi 210 (427)
T 2qag_B 167 LVTMKKLD-SKV-NIIPIIAKADAI--SKSELTKFKIKITSELVSNGV 210 (427)
T ss_dssp HHHHHHTC-SCS-EEEEEESCGGGS--CHHHHHHHHHHHHHHHBTTBC
T ss_pred HHHHHHHh-hCC-CEEEEEcchhcc--chHHHHHHHHHHHHHHHHcCC
Confidence 56665554 344 499999999998 445566677777766665554
No 207
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.81 E-value=2.4e-08 Score=99.58 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC--CCe
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 344 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~--~~~ 344 (519)
++|+|+|+.|||||||+|.|++....... .+ ...|. +.........+.. .+.. -..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G-~i-------~~~g~---------~i~~~~~~~~i~~-----v~q~~~~~~ 60 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKA-SS-------WNREE---------KIPKTVEIKAIGH-----VIEEGGVKM 60 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-----------------------------CCCCCSCCEEEE-----SCC----CC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCC-cc-------ccCCc---------ccCcceeeeeeEE-----EeecCCCcC
Confidence 68999999999999999999965431110 00 00000 0000000111111 1111 123
Q ss_pred EEEEEeCCCCCcch------------------hhhhh----------ccccCCeEEEEeecC-CCcccccccchhHHHHH
Q 010071 345 HVVVLDSPGHKDFV------------------PNMIS----------GATQSDAAILVIDAS-VGSFEVGMNTAKGLTRE 395 (519)
Q Consensus 345 ~l~LiDTPG~~~f~------------------~~~~~----------~l~~aD~vIlVVDas-~g~~e~~~~~l~~~~~e 395 (519)
.++++|+||..... ..... .+..++++++++|.. ++ +.....+
T Consensus 61 ~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~g--------L~~lD~~ 132 (270)
T 3sop_A 61 KLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHS--------LRPLDLE 132 (270)
T ss_dssp EEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSS--------CCHHHHH
T ss_pred CceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCc--------CCHHHHH
Confidence 68999999942210 00000 123378899999965 44 4456677
Q ss_pred HHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCC
Q 010071 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 442 (519)
Q Consensus 396 ~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~ 442 (519)
.+..+... ++ +|+|+||+|.+ ....+...++.+...+...++.
T Consensus 133 ~l~~L~~~-~~-vI~Vi~K~D~l--t~~e~~~~k~~i~~~l~~~~i~ 175 (270)
T 3sop_A 133 FMKHLSKV-VN-IIPVIAKADTM--TLEEKSEFKQRVRKELEVNGIE 175 (270)
T ss_dssp HHHHHHTT-SE-EEEEETTGGGS--CHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhc-Cc-EEEEEeccccC--CHHHHHHHHHHHHHHHHHcCcc
Confidence 77777665 44 99999999998 4566677778888888777653
No 208
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.80 E-value=9.2e-10 Score=114.64 Aligned_cols=151 Identities=13% Similarity=0.169 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCeEE
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~~l 346 (519)
.+|+++|.+|+|||||+|+|++...... .........+|+|.......+.. .+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~------------------------~~~~~~~~~~gtT~~~~~~~~~~---~~ 213 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDET------------------------ENVITTSHFPGTTLDLIDIPLDE---ES 213 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSC------------------------SSCCEEECCC----CEEEEESSS---SC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccc------------------------ccceecCCCCCeecceEEEEecC---Ce
Confidence 5699999999999999999996431100 00111233456666555444433 38
Q ss_pred EEEeCCCCCcch-------hhhhhc---cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010071 347 VVLDSPGHKDFV-------PNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 347 ~LiDTPG~~~f~-------~~~~~~---l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
.|+||||..... ...+.. ....+.++|++++....+..++.. +.++...+.| +++++||+|
T Consensus 214 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------~d~l~~~~~~-~~~v~nk~d 284 (368)
T 3h2y_A 214 SLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR--------FDYVSGGRRA-FTCHFSNRL 284 (368)
T ss_dssp EEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEE-EEEEECTTS
T ss_pred EEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE--------EEEecCCCce-EEEEecCcc
Confidence 999999953321 111111 356889999999854322222211 1112223444 999999999
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccc
Q 010071 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 417 lv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~ 463 (519)
.+. ....+...+.+++. +|. .++|.++....++.++.
T Consensus 285 ~~~--~~~~~~~~~~~~~~---~g~-----~l~p~~~~~~~~~~~l~ 321 (368)
T 3h2y_A 285 TIH--RTKLEKADELYKNH---AGD-----LLSPPTPEELENMPELV 321 (368)
T ss_dssp CEE--EEEHHHHHHHHHHH---BTT-----TBCSSCHHHHHTSCCEE
T ss_pred ccc--cccHHHHHHHHHHH---hCC-----ccCCCchhhHhhccCcE
Confidence 983 34444444444443 342 34777777777777664
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.79 E-value=5.8e-09 Score=112.84 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=62.0
Q ss_pred CCeEEEEEeCCCCCcc----hhhhhhc--cccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010071 342 KNYHVVVLDSPGHKDF----VPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f----~~~~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
.++.++||||||.... ...+... +..+|.++||+|+..+. . ....+..+... +|-.+||+||+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~--------~--~~~~a~~~~~~-~~i~gvVlNK~ 250 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ--------A--CEAQAKAFKDK-VDVASVIVTKL 250 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT--------T--HHHHHHHHHHH-HCCCCEEEECT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc--------c--HHHHHHHHHhh-cCceEEEEeCC
Confidence 5678999999996532 2222111 23689999999999762 1 11122222221 23127999999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCC------CCceEEEeccccCCC-ccccccccccC
Q 010071 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKD------ASLTWIPLSALENQN-LVTAPDDGIRG 469 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~------~~i~~IpvSA~tGeg-I~el~~~i~~~ 469 (519)
|........+ .+...+..-+..++... ...+.+++||++|.| +.++.+.+...
T Consensus 251 D~~~~~g~~l-~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGAL-SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHH-HHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHH-HHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9873211111 12211110000011000 111335689999999 99988776544
No 210
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.77 E-value=5e-09 Score=110.28 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=81.7
Q ss_pred EeecCCCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCc---c-cccccchhHHHHHHHHHHHH--hCCCcEEE
Q 010071 337 AYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---F-EVGMNTAKGLTREHAQLIRS--FGVDQLIV 410 (519)
Q Consensus 337 ~~~~~~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~---~-e~~~~~l~~~~~e~l~ll~~--~~~ppiIV 410 (519)
..+...+..+.||||+|++.|...+..+++.++++|||+|.+.-. . ......+.....++..++.. ....|+||
T Consensus 210 ~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiL 289 (402)
T 1azs_C 210 TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL 289 (402)
T ss_dssp EEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEE
T ss_pred EEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEE
Confidence 344556789999999999999999999999999999999999610 0 00123343444444444432 22235999
Q ss_pred EEeecccccccc---h---------------------------hHHHHHHHHHH-HHHhc---CCCCCCceEEEeccccC
Q 010071 411 AVNKMDAVQYSK---D---------------------------RFDSIKVQLGT-FLRSC---GFKDASLTWIPLSALEN 456 (519)
Q Consensus 411 VvNKiDlv~~~~---e---------------------------~le~i~e~l~~-~l~~~---g~~~~~i~~IpvSA~tG 456 (519)
|+||+|+..... . ..++....+.. +++.. +-....+.++++||+++
T Consensus 290 vgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~ 369 (402)
T 1azs_C 290 FLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDT 369 (402)
T ss_dssp EEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCH
T ss_pred EEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecC
Confidence 999999853211 0 11222222211 12211 11112467789999999
Q ss_pred CCcccccccc
Q 010071 457 QNLVTAPDDG 466 (519)
Q Consensus 457 egI~el~~~i 466 (519)
+||.++|..+
T Consensus 370 ~nV~~vF~~v 379 (402)
T 1azs_C 370 ENIRRVFNDC 379 (402)
T ss_dssp HHHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9999999764
No 211
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.76 E-value=5.7e-09 Score=108.18 Aligned_cols=125 Identities=12% Similarity=0.060 Sum_probs=76.0
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCc---c-cccccchhHHHHHHHHHHHH--hCCCcEEEEEeec
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---F-EVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKM 415 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~---~-e~~~~~l~~~~~e~l~ll~~--~~~ppiIVVvNKi 415 (519)
....+.||||+|++.|...+..+++.++++|||+|.+.-. . ..+...+.....++..++.. ....|+|||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999987100 0 01223344444444344432 2233599999999
Q ss_pred ccccccc---------------------hhHHHHHHHHHHHHHh----cCC---CCCCceEEEeccccCCCcccccccc
Q 010071 416 DAVQYSK---------------------DRFDSIKVQLGTFLRS----CGF---KDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 416 Dlv~~~~---------------------e~le~i~e~l~~~l~~----~g~---~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
|+..... ...++..+.+...+.. ..- ....+.++++||++|+||.++|..+
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 9853210 0112222222221111 110 0123567899999999999999765
No 212
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.75 E-value=1.8e-08 Score=101.79 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=72.8
Q ss_pred EEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchh
Q 010071 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (519)
Q Consensus 345 ~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~ 424 (519)
.+.+||| +++|...+..+++.+|++|+|+|++...+ . +.... .++..+...++| +|||+||+|+... ..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s---~~~l~-~~l~~~~~~~~p-iilv~NK~DL~~~--~~ 132 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--S---TYIID-KFLVLAEKNELE-TVMVINKMDLYDE--DD 132 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--C---HHHHH-HHHHHHHHTTCE-EEEEECCGGGCCH--HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--C---HHHHH-HHHHHHHHCCCC-EEEEEeHHHcCCc--hh
Confidence 7899999 99999999999999999999999997521 1 11222 223334445555 8999999999742 22
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 425 le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
. +++..+++.++- . +.++++||++|.||.++|..+
T Consensus 133 v----~~~~~~~~~~~~--~-~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 133 L----RKVRELEEIYSG--L-YPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp H----HHHHHHHHHHTT--T-SCEEECCTTTCTTHHHHHHHH
T ss_pred H----HHHHHHHHHHhh--h-CcEEEEECCCCcCHHHHHHHh
Confidence 1 223333333331 1 478999999999999998754
No 213
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.59 E-value=2.5e-08 Score=104.65 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=24.8
Q ss_pred eEEEEEeCCCCCcchh-------hhhhccccCCeEEEEeecCC
Q 010071 344 YHVVVLDSPGHKDFVP-------NMISGATQSDAAILVIDASV 379 (519)
Q Consensus 344 ~~l~LiDTPG~~~f~~-------~~~~~l~~aD~vIlVVDas~ 379 (519)
..+.||||||+..+.. .+..+++.+|++|+|+|+..
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3589999999776443 56778899999999999874
No 214
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=98.55 E-value=2.3e-08 Score=66.96 Aligned_cols=26 Identities=35% Similarity=1.072 Sum_probs=24.8
Q ss_pred CceeeeccccCCCCCcccccccCCCC
Q 010071 49 RVWSCAICTYDNEEGMSVCDICGVLR 74 (519)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~r 74 (519)
+.|.|+.|||.|+..+..||||++.|
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 46999999999999999999999988
No 215
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.53 E-value=4.7e-07 Score=95.58 Aligned_cols=162 Identities=18% Similarity=0.105 Sum_probs=88.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecCCCe
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~~~~ 344 (519)
....|+|+|++|||||||+|.|++..... ...+. .++ ....+ .++ ... .....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~-~GsI~--------~~g-----------~~~t~-~~~-----v~q-~~~~~ 120 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEE-EGAAK--------TGV-----------VEVTM-ERH-----PYK-HPNIP 120 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTS-TTSCC--------CCC---------------C-CCE-----EEE-CSSCT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcc-CceEE--------ECC-----------eecce-eEE-----ecc-ccccC
Confidence 34479999999999999999999642210 00000 000 00000 011 111 11123
Q ss_pred EEEEEeCCCCCc---chhhhhh--ccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc
Q 010071 345 HVVVLDSPGHKD---FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (519)
Q Consensus 345 ~l~LiDTPG~~~---f~~~~~~--~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~ 419 (519)
.++++|+||... -....+. .+...+..++ ++...+ +.+...++..+...+.| +++|+||.|++-
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~---------~kqrv~la~aL~~~~~p-~~lV~tkpdlll 189 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRF---------KKNDIDIAKAISMMKKE-FYFVRTKVDSDI 189 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCC---------CHHHHHHHHHHHHTTCE-EEEEECCHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCc---------cHHHHHHHHHHHhcCCC-eEEEEecCcccc
Confidence 689999999431 1112222 2333455554 666532 34556666666666666 999999999752
Q ss_pred c-------cchhHHHHHHHHHHHH----HhcCCCCCCceEEEecc--ccCCCcccccccc
Q 010071 420 Y-------SKDRFDSIKVQLGTFL----RSCGFKDASLTWIPLSA--LENQNLVTAPDDG 466 (519)
Q Consensus 420 ~-------~~e~le~i~e~l~~~l----~~~g~~~~~i~~IpvSA--~tGegI~el~~~i 466 (519)
. +....+++.+.+..+. +..|... ..+|++|+ +.+.|++++.+.+
T Consensus 190 LDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~--~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 190 TNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE--PPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSS--CCEEECCTTCTTSTTHHHHHHHH
T ss_pred cCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC--CcEEEEecCcCCccCHHHHHHHH
Confidence 1 1112233444444443 3333322 36799999 7777898876654
No 216
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=3.3e-08 Score=74.29 Aligned_cols=33 Identities=24% Similarity=0.734 Sum_probs=29.0
Q ss_pred ccCCCCceeeeccccCCCCCcccccccCCCCCc
Q 010071 44 ETSKPRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (519)
Q Consensus 44 ~~~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (519)
....++.|.|+.|||.|...+..||||+++|..
T Consensus 5 ~~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~ 37 (53)
T 2d9g_A 5 SSGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGT 37 (53)
T ss_dssp CSSCCCCEECSSSCCEECSSCSSCSSSCCCCCC
T ss_pred CCCCCCCcCCCCCccCCCCCCCccCCCCCcCCc
Confidence 344567899999999999999999999999964
No 217
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=98.48 E-value=4.2e-08 Score=67.04 Aligned_cols=28 Identities=29% Similarity=0.806 Sum_probs=26.0
Q ss_pred CCceeeeccccCCCCCcccccccCCCCC
Q 010071 48 PRVWSCAICTYDNEEGMSVCDICGVLRT 75 (519)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (519)
...|.|+.|||.|+.++..||||++.|.
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 4469999999999999999999999995
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.46 E-value=4.3e-07 Score=96.58 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=55.3
Q ss_pred CCeEEEEEeCCCCCcchhhh------hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010071 342 KNYHVVVLDSPGHKDFVPNM------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~------~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
.++.++||||||........ +..+..+|.++||+|+..+. ........+.. ..+...||+||+
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq----------~a~~~a~~f~~-~~~i~gVIlTKl 249 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ----------QAYNQALAFKE-ATPIGSIIVTKL 249 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG----------GHHHHHHHHHH-SCTTEEEEEECC
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch----------hHHHHHHHHHh-hCCCeEEEEECC
Confidence 45789999999954322221 12234589999999998651 11222222222 234467999999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccc
Q 010071 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~ 463 (519)
|...... .+.......+ +++.+++. |++++++-
T Consensus 250 D~~~~gG--------~~ls~~~~~g-----~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 250 DGSAKGG--------GALSAVAATG-----APIKFIGT--GEKIDDIE 282 (443)
T ss_dssp SSCSSHH--------HHHHHHHTTC-----CCEEEEEC--SSSTTCEE
T ss_pred CCccccc--------HHHHHHHHHC-----CCEEEEEc--CCChHHhh
Confidence 9863211 1122222333 45666664 99997763
No 219
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.39 E-value=8e-07 Score=89.83 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=66.8
Q ss_pred CCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHH
Q 010071 354 HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 433 (519)
Q Consensus 354 ~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~ 433 (519)
++++......++..+|++|+|+|++.+.+ + +. .....+..+...++| +|||+||+|+... ..++ ..+.+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~--s---~~-~l~~~l~~~~~~~~~-~ilV~NK~DL~~~--~~v~-~~~~~~ 135 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEF--N---NY-LLDNMLVVYEYFKVE-PVIVFNKIDLLNE--EEKK-ELERWI 135 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTC--C---HH-HHHHHHHHHHHTTCE-EEEEECCGGGCCH--HHHH-HHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCC--C---HH-HHHHHHHHHHhCCCC-EEEEEEcccCCCc--cccH-HHHHHH
Confidence 67777777788999999999999997521 1 22 222333345556666 7999999999842 2111 123334
Q ss_pred HHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 434 TFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 434 ~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
.+.+..|+ +++++||++|+|+.++++.+
T Consensus 136 ~~~~~~g~-----~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 136 SIYRDAGY-----DVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp HHHHHTTC-----EEEECCTTTCTTHHHHHHHT
T ss_pred HHHHHCCC-----eEEEEECCCCCCHHHHHhhc
Confidence 44445553 78999999999999998754
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.39 E-value=1.1e-06 Score=93.44 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=61.6
Q ss_pred CCeEEEEEeCCCCCcchhhh------hhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCC-CcEEEEEee
Q 010071 342 KNYHVVVLDSPGHKDFVPNM------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNK 414 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~------~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~-ppiIVVvNK 414 (519)
.++.++||||||.......+ ...+..+|.++||+|+..+. . .......+. ..+ +...+|+||
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---------~-~~~~~~~~~-~~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---------Q-AGIQAKAFK-EAVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---------G-HHHHHHHHH-TTSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---------H-HHHHHHHHh-hcccCCeEEEEeC
Confidence 56789999999965432221 22334699999999998651 1 111122222 224 447899999
Q ss_pred cccccccchhHHHHHHHHHHHHHhcCCC-------C------CCceEEEeccccCCC-cccccccccc
Q 010071 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFK-------D------ASLTWIPLSALENQN-LVTAPDDGIR 468 (519)
Q Consensus 415 iDlv~~~~e~le~i~e~l~~~l~~~g~~-------~------~~i~~IpvSA~tGeg-I~el~~~i~~ 468 (519)
+|.... .. ... .+....+.+ . +..+.+++|++.|.| +..+++.+..
T Consensus 248 ~D~~~~-~g---~~l----~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~ 307 (432)
T 2v3c_C 248 LDGSAK-GG---GAL----SAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED 307 (432)
T ss_dssp SSSCST-TH---HHH----HHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTS
T ss_pred CCCccc-hH---HHH----HHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 997632 11 111 122222221 0 111234689999999 8888876543
No 221
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=98.37 E-value=2.4e-07 Score=69.21 Aligned_cols=31 Identities=29% Similarity=0.679 Sum_probs=27.6
Q ss_pred CCCceeeeccccCCCCCcccccccCCCCCcc
Q 010071 47 KPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (519)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (519)
....|.|..|||.|+.+...||||+..|...
T Consensus 7 ~~~~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 7 GPVGWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp CSSSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCCCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 4447999999999999999999999999654
No 222
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.36 E-value=3.7e-07 Score=87.83 Aligned_cols=108 Identities=10% Similarity=-0.010 Sum_probs=60.1
Q ss_pred EEEEEeCC------CCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH----hCCCcEEEEEee
Q 010071 345 HVVVLDSP------GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNK 414 (519)
Q Consensus 345 ~l~LiDTP------G~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~~ppiIVVvNK 414 (519)
++....+| ||..+...|..|+..+|++|||||++.... ++ ......++..++.. .++| ++|+.||
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R---~e-ak~EL~eL~~mL~ee~~L~gap-LLVlANK 171 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR---HE-WQDEFSHIMAMTDPAFGSSGRP-LLVLSCI 171 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCC---CC-HHHHHHHHHHHSCTTSSCSCSC-EEEEEEE
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhH---HH-HHHHHHHHHHHhcchhhhCCCe-EEEEeCC
Confidence 34445555 799999999999999999999999986521 11 11111122333322 2345 8999999
Q ss_pred c-ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010071 415 M-DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 415 i-Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
. |+..+ -...++.+.+. -..+. ..+.+.+|||++|+||.+-++
T Consensus 172 qqDlp~A--ms~~EI~e~L~----L~~l~-R~W~Iq~csA~TGeGL~EGLd 215 (227)
T 3l82_B 172 SQGDVKR--MPCFYLAHELH----LNLLN-HPWLVQDTEAETLTGFLNGIE 215 (227)
T ss_dssp SSTTSCB--CCHHHHHHHTT----GGGGC-SCEEEEEEETTTCTTHHHHHH
T ss_pred CcCccCC--CCHHHHHHHcC----CcCCC-CCEEEEEeECCCCcCHHHHHH
Confidence 6 67532 22334444433 22232 568999999999999999753
No 223
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.30 E-value=5.4e-07 Score=94.52 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=54.3
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeecC---
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~~--- 341 (519)
+..+|+|+|.+|||||||+|+|++........ + ......+..|. ..+..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~----------------~------p~tTi~p~~G~------v~v~~~r~ 70 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN----------------Y------PYATIDPEEAK------VAVPDERF 70 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC----------------C------SSCCCCTTEEE------EEECCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccC----------------C------Cceeecceeee------eeeCCcch
Confidence 45789999999999999999999643211110 0 00011111111 00110
Q ss_pred ------------CCeEEEEEeCCCCCc-------chhhhhhccccCCeEEEEeecCC
Q 010071 342 ------------KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (519)
Q Consensus 342 ------------~~~~l~LiDTPG~~~-------f~~~~~~~l~~aD~vIlVVDas~ 379 (519)
-...+.+||+||... +...+...++.+|++++|+|+..
T Consensus 71 ~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 71 DWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred hhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 013578999999432 44566778889999999999874
No 224
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=98.28 E-value=3.3e-07 Score=71.13 Aligned_cols=30 Identities=27% Similarity=0.616 Sum_probs=27.1
Q ss_pred CceeeeccccCCCCCcccccccCCCCCccc
Q 010071 49 RVWSCAICTYDNEEGMSVCDICGVLRTPLV 78 (519)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~r~~~~ 78 (519)
..|.|+.|||.|+.+...|||||+.|...+
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~~ 36 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPETY 36 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSSC
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCccc
Confidence 369999999999999999999999997643
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.28 E-value=1.9e-06 Score=91.44 Aligned_cols=95 Identities=20% Similarity=0.267 Sum_probs=53.5
Q ss_pred CCeEEEEEeCCCCCc------chhhhhh--ccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEe
Q 010071 342 KNYHVVVLDSPGHKD------FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~------f~~~~~~--~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvN 413 (519)
.++.++|+||||... +...+.. ....++.++||+|+..+. .....+..+... .+...||+|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq----------~a~~~a~~f~~~-~~~~gVIlT 246 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ----------KAYDLASRFHQA-SPIGSVIIT 246 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG----------GGHHHHHHHHHH-CSSEEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch----------HHHHHHHHHhcc-cCCcEEEEe
Confidence 467899999999544 2222211 223479999999998651 111222222222 233689999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccc
Q 010071 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el 462 (519)
|+|.... ..... ......+ +++.+++. |++++++
T Consensus 247 KlD~~a~----~G~al----s~~~~~g-----~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 247 KMDGTAK----GGGAL----SAVVATG-----ATIKFIGT--GEKIDEL 280 (433)
T ss_dssp CGGGCSC----HHHHH----HHHHHHT-----CEEEEEEC--CSSSSCE
T ss_pred ccccccc----chHHH----HHHHHHC-----CCEEEEEC--CCChHhC
Confidence 9997632 11112 1222233 46677775 8888754
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.18 E-value=1.7e-05 Score=80.07 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=56.0
Q ss_pred CCeEEEEEeCCCCCc--chhhhh------hccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEe
Q 010071 342 KNYHVVVLDSPGHKD--FVPNMI------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~--f~~~~~------~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvN 413 (519)
.++.++||||||... ....+. ..+..+|.+++|+|+..+ ... ...+..+.. ..+...+|+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---------~~~-~~~~~~~~~-~~~i~gvVln 247 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---------QKA-YDLASKFNQ-ASKIGTIIIT 247 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGH-HHHHHHHHH-TCTTEEEEEE
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---------HHH-HHHHHHHHh-hCCCCEEEEe
Confidence 567899999999766 322222 234569999999999754 111 122222222 3443678999
Q ss_pred ecccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccc
Q 010071 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 414 KiDlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~ 463 (519)
|+|.... .. .+..+....+ +++.+++ .|+++.++.
T Consensus 248 k~D~~~~----~g----~~~~~~~~~~-----~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 248 KMDGTAK----GG----GALSAVAATG-----ATIKFIG--TGEKIDELE 282 (297)
T ss_dssp CGGGCTT----HH----HHHHHHHTTT-----CCEEEEE--CSSSTTCEE
T ss_pred CCCCCcc----hH----HHHHHHHHHC-----cCEEEEe--CCCChhhcc
Confidence 9997521 11 1223333344 3555555 788887764
No 227
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.10 E-value=2.6e-06 Score=85.37 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=61.9
Q ss_pred EEeCCCCC-cchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHH
Q 010071 348 VLDSPGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (519)
Q Consensus 348 LiDTPG~~-~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le 426 (519)
|-..|||. .....+...+..+|++|+|+|+..+.+. ....+..++ +..|+|+|+||+|++. ....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~--------~~~~l~~~l---~~kp~ilVlNK~DL~~--~~~~- 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSS--------RNPMIEDIL---KNKPRIMLLNKADKAD--AAVT- 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTT--------SCHHHHHHC---SSSCEEEEEECGGGSC--HHHH-
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCcc--------CCHHHHHHH---CCCCEEEEEECcccCC--HHHH-
Confidence 34579976 5677888899999999999999977321 111222222 3445899999999984 2222
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
+....+++..+ ++++++||++|.|+.++++.+
T Consensus 69 ---~~~~~~~~~~g-----~~~i~iSA~~~~gi~~L~~~i 100 (282)
T 1puj_A 69 ---QQWKEHFENQG-----IRSLSINSVNGQGLNQIVPAS 100 (282)
T ss_dssp ---HHHHHHHHTTT-----CCEEECCTTTCTTGGGHHHHH
T ss_pred ---HHHHHHHHhcC-----CcEEEEECCCcccHHHHHHHH
Confidence 23334444444 367999999999999987643
No 228
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.05 E-value=2.2e-06 Score=85.84 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=23.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhh
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
.+.++|+|+|.+|+|||||+|+|++.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEecCCCchHHHHHHHhcC
Confidence 35689999999999999999999954
No 229
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.00 E-value=4.2e-06 Score=86.94 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=67.7
Q ss_pred CCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHH
Q 010071 353 GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQL 432 (519)
Q Consensus 353 G~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l 432 (519)
..++|...+....+.++++|+|+|+... ...+..++..+ .+..|+|+|+||+|+... ....+.+.+.+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~--------~~~~~~~l~~~---~~~~p~ilV~NK~DL~~~-~~~~~~~~~~l 122 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDF--------NGSWLPGLHRF---VGNNKVLLVGNKADLIPK-SVKHDKVKHWM 122 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSH--------HHHCCTTHHHH---SSSSCEEEEEECGGGSCT-TSCHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCC--------cccHHHHHHHH---hCCCcEEEEEEChhcCCc-ccCHHHHHHHH
Confidence 3567888777777889999999999864 11111222222 233459999999999843 22234455556
Q ss_pred HHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 433 GTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 433 ~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..+++..|+.. ..++++||++|.|+.++++.+
T Consensus 123 ~~~~~~~g~~~--~~v~~iSA~~g~gi~~L~~~l 154 (368)
T 3h2y_A 123 RYSAKQLGLKP--EDVFLISAAKGQGIAELADAI 154 (368)
T ss_dssp HHHHHHTTCCC--SEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHcCCCc--ccEEEEeCCCCcCHHHHHhhh
Confidence 66667777642 367999999999999998765
No 230
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.99 E-value=3.1e-06 Score=87.97 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=68.7
Q ss_pred CCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHH
Q 010071 353 GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQL 432 (519)
Q Consensus 353 G~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l 432 (519)
.+++|...+...+..++++|+|+|+..... .+..++..+ ++..|+|+|+||+|++... ...+.+.+.+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--------s~~~~l~~~---l~~~piilV~NK~DLl~~~-~~~~~~~~~l 124 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--------SFIPGLPRF---AADNPILLVGNKADLLPRS-VKYPKLLRWM 124 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--------GCCSSHHHH---CTTSCEEEEEECGGGSCTT-CCHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--------chhhHHHHH---hCCCCEEEEEEChhcCCCc-cCHHHHHHHH
Confidence 378888888777788999999999997621 111122222 2234599999999998532 2234455566
Q ss_pred HHHHHhcCCCCCCceEEEeccccCCCcccccccc
Q 010071 433 GTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (519)
Q Consensus 433 ~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i 466 (519)
..+++..|+.. ..++++||++|.|+.++++.+
T Consensus 125 ~~~~~~~g~~~--~~v~~iSA~~g~gi~~L~~~I 156 (369)
T 3ec1_A 125 RRMAEELGLCP--VDVCLVSAAKGIGMAKVMEAI 156 (369)
T ss_dssp HHHHHTTTCCC--SEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHcCCCc--ccEEEEECCCCCCHHHHHHHH
Confidence 66677777643 367999999999999998765
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.96 E-value=4.5e-06 Score=91.77 Aligned_cols=28 Identities=32% Similarity=0.277 Sum_probs=24.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
..+.++|+|+|.+|+|||||+|+|++..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3456889999999999999999999653
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.95 E-value=5.5e-05 Score=77.40 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=53.4
Q ss_pred CeEEEEEeCCCCCcchhhhhh------ccccCCeEEEEeecCCCcccccccchhHHHHHHHH-HHHHhCCCcEEEEEeec
Q 010071 343 NYHVVVLDSPGHKDFVPNMIS------GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~------~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~-ll~~~~~ppiIVVvNKi 415 (519)
...+.++||+|.......... .+-.+|-.++|+|+..+ ......+. +....++. +|++||+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~----------~~~~~~~~~~~~~~~it--~iilTKl 278 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG----------NAIVEQARQFNEAVKID--GIILTKL 278 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT----------THHHHHHHHHHHHSCCC--EEEEECG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH----------HHHHHHHHHHHHhcCCC--EEEEeCc
Confidence 345788999996433222211 12237899999998865 12222232 33344443 7899999
Q ss_pred ccccccchhHHHHHHHHHHHHHhcCCCCCCceEEEeccccCCCccccc
Q 010071 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (519)
Q Consensus 416 Dlv~~~~e~le~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~ 463 (519)
|.... ...+. ..+...+ .++.+++ +|+++.++.
T Consensus 279 D~~a~----~G~~l----~~~~~~~-----~pi~~i~--~Ge~v~dl~ 311 (328)
T 3e70_C 279 DADAR----GGAAL----SISYVID-----APILFVG--VGQGYDDLR 311 (328)
T ss_dssp GGCSC----CHHHH----HHHHHHT-----CCEEEEE--CSSSTTCEE
T ss_pred CCccc----hhHHH----HHHHHHC-----CCEEEEe--CCCCccccc
Confidence 96422 11122 2333334 3566666 899997763
No 233
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.86 E-value=9.7e-06 Score=81.49 Aligned_cols=101 Identities=11% Similarity=-0.015 Sum_probs=65.5
Q ss_pred CCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHH----hCCCcEEEEEee-cccccccchhHH
Q 010071 352 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNK-MDAVQYSKDRFD 426 (519)
Q Consensus 352 PG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~~ppiIVVvNK-iDlv~~~~e~le 426 (519)
.||..+...+..|+..+|++|||||++.... ++ ......++..++.. .+.| ++|+.|| -|+..+ -...
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR---le-ak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~A--ms~~ 267 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKR---HE-WQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKR--MPCF 267 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCC---CC-HHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCB--CCHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhH---HH-HHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCC--CCHH
Confidence 5799999999999999999999999997631 22 11222222233321 3555 8999997 477643 2223
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEeccccCCCcccccc
Q 010071 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 427 ~i~e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~ 464 (519)
++.+.+. -..+. ..+.+.+|||++|+||.+-++
T Consensus 268 EI~e~L~----L~~l~-r~W~Iq~csA~tGeGL~EGld 300 (312)
T 3l2o_B 268 YLAHELH----LNLLN-HPWLVQDTEAETLTGFLNGIE 300 (312)
T ss_dssp HHHHHTT----GGGGC-SCEEEEEEETTTCTTHHHHHH
T ss_pred HHHHHcC----CccCC-CcEEEEecccCCCcCHHHHHH
Confidence 4444433 22232 568899999999999999753
No 234
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.76 E-value=8.2e-06 Score=80.83 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
++|+|+|.+|+|||||+|+|++.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 68999999999999999999954
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.73 E-value=7.8e-05 Score=80.20 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.+.-.|+|+|..|+|||||++.|.+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 345679999999999999999998653
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.66 E-value=5e-05 Score=80.59 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCCCCcchhhhhh------ccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010071 342 KNYHVVVLDSPGHKDFVPNMIS------GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~------~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
.++.++||||||...+...... .+..++.+++|+|+..+. ........+-...++ .-||+||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~~l~i--~gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNEALPL--TGVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHHHSCC--CCEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhccCCC--eEEEEecC
Confidence 4678999999996554332222 244689999999998651 111111122222332 24799999
Q ss_pred ccc
Q 010071 416 DAV 418 (519)
Q Consensus 416 Dlv 418 (519)
|..
T Consensus 251 D~~ 253 (433)
T 2xxa_A 251 DGD 253 (433)
T ss_dssp TSS
T ss_pred CCC
Confidence 975
No 237
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.64 E-value=1.5e-05 Score=78.93 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=59.1
Q ss_pred CCCCCc-chhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHH
Q 010071 351 SPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (519)
Q Consensus 351 TPG~~~-f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~ 429 (519)
-|||.. ....+...+..+|++|+|+|+..+...... ... ++ +.| .|+|+||+|++. ....+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~----ll---~k~-~iivlNK~DL~~--~~~~~--- 65 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD----FS---RKE-TIILLNKVDIAD--EKTTK--- 65 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC----CT---TSE-EEEEEECGGGSC--HHHHH---
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH----hc---CCC-cEEEEECccCCC--HHHHH---
Confidence 388754 445778889999999999999977432211 011 11 444 899999999984 23222
Q ss_pred HHHHHHHHhcCCCCCCceEEEeccccCCCcccccccccc
Q 010071 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGIR 468 (519)
Q Consensus 430 e~l~~~l~~~g~~~~~i~~IpvSA~tGegI~el~~~i~~ 468 (519)
.+..+++..|+ ++ ++||++|.|+.++++.+..
T Consensus 66 -~~~~~~~~~g~-----~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 66 -KWVEFFKKQGK-----RV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp -HHHHHHHHTTC-----CE-EECCTTSCHHHHHHHHCCC
T ss_pred -HHHHHHHHcCC-----eE-EEECCCCcCHHHHHHHHHH
Confidence 33334444443 46 9999999999999876543
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.62 E-value=0.00014 Score=73.67 Aligned_cols=89 Identities=19% Similarity=0.246 Sum_probs=59.3
Q ss_pred hccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCC
Q 010071 363 SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 442 (519)
Q Consensus 363 ~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~ 442 (519)
..+..+|.+++|+|+..+.+. .......+..+...+++ .|||+||+|+... ....+..+.+..+.+..|+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~------~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~--~~~~~~~~~~~~~y~~~g~- 151 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFS------TALLDRFLVLVEANDIQ-PIICITKMDLIED--QDTEDTIQAYAEDYRNIGY- 151 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCC------HHHHHHHHHHHHTTTCE-EEEEEECGGGCCC--HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCEEEEEEeCCCCCCC------HHHHHHHHHHHHHCCCC-EEEEEECCccCch--hhhHHHHHHHHHHHHhCCC-
Confidence 357889999999999976321 12344444455556777 6999999999843 2210112333444455564
Q ss_pred CCCceEEEeccccCCCccccccc
Q 010071 443 DASLTWIPLSALENQNLVTAPDD 465 (519)
Q Consensus 443 ~~~i~~IpvSA~tGegI~el~~~ 465 (519)
+++++||.+|.|+.++++.
T Consensus 152 ----~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 152 ----DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp ----CEEECCHHHHTTCTTTGGG
T ss_pred ----eEEEEecCCCCCHHHHHhh
Confidence 5699999999999998764
No 239
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=97.56 E-value=2.3e-05 Score=52.88 Aligned_cols=29 Identities=21% Similarity=0.609 Sum_probs=25.7
Q ss_pred CCCceeeeccccCCCCCcccccccCCCCC
Q 010071 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (519)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (519)
..|.|-|+.||+-|..+...|.+|.++|.
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCC
Confidence 45789999999999999999999999984
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.45 E-value=0.0003 Score=71.64 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+...|+|+|..|+||||++..|.+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44569999999999999999997543
No 241
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.32 E-value=0.00033 Score=77.31 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.|+|+|+.|||||||++.|.|.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999999975
No 242
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.29 E-value=0.00023 Score=71.95 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+.-.|+|+|+.|||||||++.|.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34579999999999999999998653
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.26 E-value=0.00035 Score=70.24 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
...|+|+|..|+||||++..|.+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 244
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.20 E-value=0.0013 Score=66.47 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+...|+|+|.+|+||||++..|.+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34569999999999999999997553
No 245
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.00022 Score=51.89 Aligned_cols=35 Identities=17% Similarity=0.446 Sum_probs=30.3
Q ss_pred cccCCCCceeeeccccCCCCCcccccccCCCCCcc
Q 010071 43 QETSKPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (519)
Q Consensus 43 ~~~~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (519)
+-.+..|.|-|+.|++.|......|-+|++++..-
T Consensus 4 ~~~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs 38 (47)
T 2ebq_A 4 GSSGVIGTWDCDTCLVQNKPEAIKCVACETPKPGT 38 (47)
T ss_dssp SCCCCSSSEECSSSCCEECSSCSBCSSSCCBCSCS
T ss_pred CcCCCCCceECCeeeccCccCCceecCcCCCCCCC
Confidence 33447889999999999999999999999999653
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.17 E-value=0.001 Score=70.38 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+...|+|+|..|+||||++..|.+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999997554
No 247
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.16 E-value=0.0019 Score=59.73 Aligned_cols=66 Identities=11% Similarity=0.044 Sum_probs=45.9
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC----CCcEEEEEeeccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG----VDQLIVAVNKMDA 417 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~----~ppiIVVvNKiDl 417 (519)
..+.++|+|||+.. .......+..+|.+|+|+..... - ......+..+...+ ..++.+|+|+++.
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~--------~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL--------D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT--------T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH--------H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 35789999999966 34445566779999999998854 2 34445555555443 1236899999995
Q ss_pred c
Q 010071 418 V 418 (519)
Q Consensus 418 v 418 (519)
.
T Consensus 143 ~ 143 (206)
T 4dzz_A 143 M 143 (206)
T ss_dssp T
T ss_pred C
Confidence 4
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.03 E-value=0.0034 Score=62.92 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+...|+|+|..|+||||++..|.+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999997553
No 249
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.87 E-value=0.0021 Score=68.29 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhh
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
.+..-|+|+|.+++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45567999999999999999999965
No 250
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=96.86 E-value=0.00016 Score=78.48 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=0.0
Q ss_pred ceeeeccccCCCCCcccccccCCCCCc
Q 010071 50 VWSCAICTYDNEEGMSVCDICGVLRTP 76 (519)
Q Consensus 50 ~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (519)
.-+|+.|||-||++|..|||||+.-..
T Consensus 180 ~~~CP~CTF~NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 180 ENICPACTFANHPQIGNCEICGHRLPN 206 (566)
T ss_dssp ---------------------------
T ss_pred CCCCCcccccCChhhhcccccCCcCCC
Confidence 467999999999999999999987644
No 251
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=96.81 E-value=0.00039 Score=47.13 Aligned_cols=29 Identities=21% Similarity=0.670 Sum_probs=25.2
Q ss_pred CCCceeeeccccCCCCCcccccccCCCCC
Q 010071 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (519)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (519)
..|.|.|+.|++-|..+...|-+|.+++.
T Consensus 4 ~~G~W~C~~C~v~N~~~~~kC~aCet~Kp 32 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADSTKCIACESAKP 32 (34)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBC-
T ss_pred CCCceECCeeEeECccccCEEcccCCcCC
Confidence 46789999999999999999999999884
No 252
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=0.0013 Score=47.93 Aligned_cols=32 Identities=19% Similarity=0.573 Sum_probs=28.9
Q ss_pred CCCCceeeeccccCCCCCcccccccCCCCCcc
Q 010071 46 SKPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (519)
Q Consensus 46 ~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (519)
...|.|-|+.|++.|......|-+|+++|..-
T Consensus 7 ~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~ 38 (47)
T 2ebr_A 7 GPEGSWDCELCLVQNKADSTKCLACESAKPGT 38 (47)
T ss_dssp SCCSSCCCSSSCCCCCSSCSBCSSSCCBCCCC
T ss_pred CCCCeeECCeeecCCcCCcceecCcCCCCCCC
Confidence 36789999999999999999999999999654
No 253
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.58 E-value=0.0058 Score=63.14 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=53.8
Q ss_pred ccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccccccchhHHHHHHHHHHHHHhcCCCC
Q 010071 364 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (519)
Q Consensus 364 ~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~~e~le~i~e~l~~~l~~~g~~~ 443 (519)
.+..+|.+++|.. ..+.+ . .......+..+...+++ .|||+||+|++.. ...+. .+.+...+...|+
T Consensus 127 i~anvD~v~iv~a-~~P~~----~--~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~--~~~~~-~~~~~~~y~~~G~-- 193 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPEL----S--LNIIDRYLVGCETLQVE-PLIVLNKIDLLDD--EGMDF-VNEQMDIYRNIGY-- 193 (358)
T ss_dssp EEECCCEEEEEEE-STTTC----C--HHHHHHHHHHHHHHTCE-EEEEEECGGGCCH--HHHHH-HHHHHHHHHTTTC--
T ss_pred HHhcCCEEEEEEe-CCCCC----C--HHHHHHHHHHHHhcCCC-EEEEEECccCCCc--hhHHH-HHHHHHHHHhCCC--
Confidence 4577999997754 44421 1 12344445555667777 5999999999842 22111 2233344455665
Q ss_pred CCceEEEeccccCCCcccccc
Q 010071 444 ASLTWIPLSALENQNLVTAPD 464 (519)
Q Consensus 444 ~~i~~IpvSA~tGegI~el~~ 464 (519)
+++++||.+|.|+.++..
T Consensus 194 ---~v~~~Sa~~~~gl~~L~~ 211 (358)
T 2rcn_A 194 ---RVLMVSSHTQDGLKPLEE 211 (358)
T ss_dssp ---CEEECBTTTTBTHHHHHH
T ss_pred ---cEEEEecCCCcCHHHHHH
Confidence 579999999999998754
No 254
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.57 E-value=0.0035 Score=63.17 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+.-.|+|+|+.|||||||++.|.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999998653
No 255
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.53 E-value=0.02 Score=53.90 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=45.4
Q ss_pred CCeEEEEEeCCCC-CcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh-CCCcEEEEEeecccc
Q 010071 342 KNYHVVVLDSPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAV 418 (519)
Q Consensus 342 ~~~~l~LiDTPG~-~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~~ppiIVVvNKiDlv 418 (519)
..+.++|+|||+. ... .....+..+|.+|+++..... -.......+..+... +.+ +.+|+|+++..
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~--------~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDAL--------ALDALMLTIETLQKLGNNR-FRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHH--------HHHHHHHHHHHHHHTCSSS-EEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCch--------hHHHHHHHHHHHHhccCCC-EEEEEEecCCc
Confidence 4578999999997 433 334466779999999988743 123344455555553 445 88999999865
No 256
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.47 E-value=0.0046 Score=63.89 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=22.3
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+.-.|+|+|+.|||||||++.|.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34569999999999999999998653
No 257
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.02 E-value=0.00079 Score=71.75 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhh
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
.++..|+++|.+|+||||+.++|...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999743
No 258
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.99 E-value=0.034 Score=53.85 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=44.2
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCC-CcEEEEEeecc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNKMD 416 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~-ppiIVVvNKiD 416 (519)
..+.++|||||+... ......+..+|.+|+|+..... -..........+...+. .++.+|+|++.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~--------s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKW--------AVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTT--------HHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChH--------HHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 457899999999653 2344556679999999998754 12334455566666543 24789999994
No 259
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=95.86 E-value=0.0026 Score=53.66 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=25.8
Q ss_pred CCCceeeeccccCCCCCcccccccCCCCC
Q 010071 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (519)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (519)
.+|.|.|+.|++.|......|.+|+++|.
T Consensus 69 ~~g~W~C~~C~~~N~~~~~~C~aC~tpkP 97 (98)
T 3gj7_B 69 AIGTWDCDTCLVQNKPEAVKCVACETPKP 97 (98)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCcccCCcCcCCChhhcceecccCCCCC
Confidence 46789999999999999999999999984
No 260
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.75 E-value=0.037 Score=54.85 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=41.8
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHh----CCCcEEEEEeeccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDA 417 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~~ppiIVVvNKiDl 417 (519)
..+.++|||||+..... .+...+..+|.+|+|+..... -.......+..+... +.+.+-+|+|+++.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~--------s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFD--------SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHH--------HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHH--------HHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999999854322 223456779999999987743 112334445555542 33322389999983
No 261
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.42 E-value=0.0033 Score=63.58 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..++|+|++|||||||+|.|++.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47999999999999999999854
No 262
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.35 E-value=0.007 Score=55.99 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+++|+|++|+|||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998654
No 263
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.19 E-value=0.0073 Score=56.49 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..|+|+|++|||||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999999864
No 264
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.17 E-value=0.0093 Score=54.68 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..|+|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999999864
No 265
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.08 E-value=0.01 Score=44.82 Aligned_cols=29 Identities=21% Similarity=0.566 Sum_probs=27.0
Q ss_pred CCCceeeeccccCCCCCcccccccCCCCC
Q 010071 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (519)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (519)
..|.|-|+.|..-|......|..|++++.
T Consensus 28 ~~GsWeC~~C~V~N~a~~~kC~ACetpKP 56 (57)
T 2ebv_A 28 PIGSWECSVCCVSNNAEDNKCVSCMSEKP 56 (57)
T ss_dssp CSSSCCCSSSCCCCCSSCSBCSSSCCBCC
T ss_pred CCCeeeCCeeEccCccCCceeeEcCCcCC
Confidence 67899999999999999999999999874
No 266
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=94.98 E-value=0.0042 Score=52.36 Aligned_cols=31 Identities=26% Similarity=0.650 Sum_probs=0.0
Q ss_pred CCCceeeeccccCCCCCcccccccCCCCCcc
Q 010071 47 KPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (519)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (519)
....|.|+.|+|.|..+...|.+|+..|...
T Consensus 6 ~~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~ 36 (98)
T 3gj7_B 6 AGSSWQCDTCLLQNKVTDNKCIACQAAKLPL 36 (98)
T ss_dssp -------------------------------
T ss_pred CCCcccCCccccCChhhcccccccCCCCCCC
Confidence 3456999999999999999999999999654
No 267
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.87 E-value=0.011 Score=54.64 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
..|+|+|++|||||||++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 359999999999999999998653
No 268
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.85 E-value=0.011 Score=54.42 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-|+|+|+.|||||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38999999999999999998653
No 269
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.81 E-value=0.011 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|||||||++.|.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 49999999999999999998654
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.79 E-value=0.014 Score=54.59 Aligned_cols=25 Identities=44% Similarity=0.437 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
...|+|+|++|+|||||++.|.+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999998654
No 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.70 E-value=0.015 Score=53.10 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45999999999999999999865
No 272
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.69 E-value=0.015 Score=54.97 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
++..-|+|+|++|||||||+++|+...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345569999999999999999998654
No 273
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.64 E-value=0.013 Score=55.60 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|++|||||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 39999999999999999998643
No 274
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=94.43 E-value=0.013 Score=39.10 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=26.2
Q ss_pred CCceeeeccccCCCCCcccccccCCCCC
Q 010071 48 PRVWSCAICTYDNEEGMSVCDICGVLRT 75 (519)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (519)
+|-|.|..|.+-|...-..|-.||++|.
T Consensus 3 ~gDW~C~~C~~~Nfa~r~~C~~C~~pr~ 30 (32)
T 2lk0_A 3 FEDWLCNKCCLNNFRKRLKCFRCGADKF 30 (32)
T ss_dssp CSEEECTTTCCEEETTCCBCTTTCCBTT
T ss_pred CCCCCcCcCcCCcChhcceecCCCCcCC
Confidence 5779999999999999999999999984
No 275
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.43 E-value=0.022 Score=51.40 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.4
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+...|+|+|.+|||||||++.|.+..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 345699999999999999999976543
No 276
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.42 E-value=0.016 Score=55.50 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.-++|+|+.|||||||++.|++..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 459999999999999999998754
No 277
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.39 E-value=0.019 Score=53.50 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.3
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+...|+|+|+.|+|||||++.|.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34569999999999999999998753
No 278
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.29 E-value=0.02 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
...|+|+|.+||||||+.++|....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3469999999999999999998543
No 279
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.28 E-value=0.021 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
...|+|+|.+|||||||++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3469999999999999999998543
No 280
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.27 E-value=0.017 Score=52.62 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhHhHHhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLL 287 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl 287 (519)
-++|+|++|||||||++.++
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999866
No 281
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.25 E-value=0.021 Score=51.84 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=22.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
|++..|+|+|.+|+||||+.+.|....+
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457799999999999999999875443
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.24 E-value=0.02 Score=51.41 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
..|+|+|.+|+|||||.+.|.+..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999986544
No 283
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.20 E-value=0.02 Score=51.92 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
...|+|+|.+||||||+.+.|....+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999975433
No 284
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.13 E-value=0.019 Score=55.40 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|||||||++.|.+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 49999999999999999998653
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.12 E-value=0.023 Score=52.77 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
...|+|+|.+|||||||++.|.+..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45699999999999999999986554
No 286
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.10 E-value=0.021 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|||||||++.|.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 49999999999999999998653
No 287
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.04 E-value=0.021 Score=58.90 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
..++|+|++|||||||+|.|++..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 369999999999999999999643
No 288
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.03 E-value=0.091 Score=49.53 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=47.8
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiD 416 (519)
..+.++|||||+.... .....+..+|.+|+|+..... -.........++...+.+.+.+|+||++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~--------s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLN--------SIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHH--------HHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHH--------HHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 5678999999985433 344556789999999988743 1234455556777778777889999998
No 289
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.97 E-value=0.026 Score=53.01 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.-|+|+|++|||||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 459999999999999999998653
No 290
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.95 E-value=0.024 Score=50.12 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
..|+|+|.+||||||+.+.| ...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 35999999999999999999 4443
No 291
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.91 E-value=0.021 Score=54.63 Aligned_cols=22 Identities=45% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.++|+|+.|||||||++.|.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 292
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.89 E-value=0.03 Score=53.89 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=22.9
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+...|+|+|+.|||||||++.|.+..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445699999999999999999987544
No 293
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.88 E-value=0.024 Score=51.84 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhHhHHhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~ 288 (519)
.|+|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999985
No 294
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.86 E-value=0.023 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
...|+|+|.+|||||||+++|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3459999999999999999998544
No 295
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.85 E-value=0.027 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.118 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.|+|+|.+||||||+.+.|....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999997543
No 296
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.85 E-value=0.029 Score=51.77 Aligned_cols=27 Identities=26% Similarity=0.180 Sum_probs=22.8
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+...|+|.|.+||||||+.+.|....+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456799999999999999999975433
No 297
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.85 E-value=0.027 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+..|+|+|.+|||||||++.|...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999833
No 298
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.80 E-value=0.027 Score=52.18 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
..|+|+|.+|||||||.+.|....+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999976543
No 299
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.79 E-value=0.025 Score=52.87 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.5
Q ss_pred EEEEcCCCCCchhHhHHhhhh
Q 010071 269 LAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~ 289 (519)
|+|+|++||||+||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999854
No 300
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.77 E-value=0.03 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~ 288 (519)
..|+|+|.+|+||||+.++|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4599999999999999999985
No 301
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.74 E-value=0.19 Score=53.31 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhh
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~ 288 (519)
.+..-|+|+|..++|||+|+|.|+.
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHHH
Confidence 3556788999999999999997763
No 302
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.72 E-value=0.03 Score=53.12 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 303
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=93.68 E-value=0.041 Score=36.88 Aligned_cols=29 Identities=24% Similarity=0.634 Sum_probs=26.6
Q ss_pred CCCceeeeccccCCCCCcccccccCCCCC
Q 010071 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (519)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (519)
.+|-|.|+.|-+-|...-..|-+|+.+|.
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~ 31 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSECNMCNTPKY 31 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBCSSSCCBTT
T ss_pred CCCCcccCCCCCccccccccccccCCcCC
Confidence 45679999999999999999999999985
No 304
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.68 E-value=0.028 Score=54.29 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.++|+|+.|+|||||++.|.+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999854
No 305
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.65 E-value=0.031 Score=51.85 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
...|+|+|.+|+||||+.+.|....+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34799999999999999999985543
No 306
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.62 E-value=0.028 Score=54.54 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|||||||++.|.+..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998653
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.59 E-value=0.033 Score=50.67 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
...|+|+|.+||||||+.+.|....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4569999999999999999997543
No 308
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.58 E-value=0.03 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|+|||||++.|.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 459999999999999999998653
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.57 E-value=0.031 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
..|+|+|.+|+||||+.+.|....+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999986543
No 310
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.56 E-value=0.03 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.++|+|+.|+|||||++.|.+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999864
No 311
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.54 E-value=0.031 Score=54.43 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|||||||++.|.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999998653
No 312
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.53 E-value=0.028 Score=55.17 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|||||||++.|.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 349999999999999999998653
No 313
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.52 E-value=0.029 Score=54.89 Aligned_cols=24 Identities=38% Similarity=0.299 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|||||||++.|.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998653
No 314
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.47 E-value=0.029 Score=55.62 Aligned_cols=24 Identities=38% Similarity=0.274 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|||||||++.|.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 349999999999999999998653
No 315
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.47 E-value=0.03 Score=53.43 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.++|+|+.|+|||||++.|.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999865
No 316
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.46 E-value=0.031 Score=55.10 Aligned_cols=24 Identities=42% Similarity=0.355 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|||||||++.|.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 359999999999999999998653
No 317
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.38 E-value=0.033 Score=56.16 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.|+|+|++|+|||||++.|++..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 459999999999999999998653
No 318
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.37 E-value=0.032 Score=55.76 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|++|+|||||+|.|.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 58999999999999999998643
No 319
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.36 E-value=0.034 Score=54.53 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|+|||||++.|.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 459999999999999999998654
No 320
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.36 E-value=0.041 Score=51.02 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
...|+|+|.+|+|||||.+.|.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999998543
No 321
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.36 E-value=0.033 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=15.6
Q ss_pred eEEEEEcCCCCCchhHhHHhh-hhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLL-FLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl-~~~ 290 (519)
..|+|+|++|||||||++.|. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 459999999999999999998 653
No 322
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.35 E-value=0.035 Score=53.98 Aligned_cols=22 Identities=36% Similarity=0.247 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999999974
No 323
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.33 E-value=0.035 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|||||||++.|.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998653
No 324
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.33 E-value=0.032 Score=52.16 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.|+|+|+.|+|||||++.|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48999999999999999998643
No 325
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.32 E-value=0.038 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
...|+|+|.+||||||+.+.|....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999997543
No 326
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.31 E-value=0.25 Score=45.88 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCchhHhHHhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~ 288 (519)
...|+|.|++|+|||||+..|..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 327
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.31 E-value=0.035 Score=55.58 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCchhHhHHhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLL 287 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl 287 (519)
..++|+|++|||||||+|.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 328
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.30 E-value=0.037 Score=50.65 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
.|+|+|.+||||||+.+.|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 599999999999999999986544
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.29 E-value=0.039 Score=50.10 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
...|+|+|.+|+||||+.+.|....+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999975443
No 330
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.22 E-value=0.04 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..|+|+|.+|+|||||+++|+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45899999999999999999843
No 331
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.22 E-value=0.036 Score=54.53 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|||||||++.|.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 359999999999999999998653
No 332
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.21 E-value=0.037 Score=51.12 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~ 288 (519)
.+|+|+|.+|+|||||.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999986
No 333
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.20 E-value=0.038 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.|+|+|++|+|||||++.|++.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5999999999999999999854
No 334
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.18 E-value=0.037 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|||||||++.|.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 49999999999999999998654
No 335
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.18 E-value=0.038 Score=54.35 Aligned_cols=23 Identities=48% Similarity=0.336 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.++|+|+.|||||||++.|.+.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999975
No 336
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.17 E-value=0.042 Score=50.33 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhh
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+..+|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999755
No 337
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.14 E-value=0.038 Score=54.53 Aligned_cols=24 Identities=42% Similarity=0.385 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|+|||||++.|.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999998653
No 338
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.12 E-value=0.038 Score=54.11 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|||||||++.|.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999998653
No 339
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.11 E-value=0.039 Score=49.77 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=17.8
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+...|+|+|.+||||||+.+.|....+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345799999999999999999974433
No 340
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.09 E-value=0.22 Score=46.79 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=46.9
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
.+.++|+|||+... ......+..+|.+|+|+..... -.......+..+...+.+.+-+|+|+++..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~--------~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEIS--------CLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHH--------HHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcc--------cHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 46899999998544 3445667889999999988743 123344555666666666677999999864
No 341
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.08 E-value=0.038 Score=52.32 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhHhHHhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLL 287 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl 287 (519)
.++|+|++|||||||++.|+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 49999999999999999988
No 342
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.06 E-value=0.039 Score=54.73 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|||||||++.|.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 359999999999999999998653
No 343
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.06 E-value=0.043 Score=49.70 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+...|+|+|.+|+||||+.+.|....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 44579999999999999999997543
No 344
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.05 E-value=0.082 Score=55.27 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=21.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhh
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~ 288 (519)
..+.-|+|+|.+|||||||.++|..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999974
No 345
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.03 E-value=0.038 Score=51.57 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhHhHHhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~ 288 (519)
-++|+|++|+|||||++.|.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999985
No 346
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.02 E-value=0.049 Score=54.91 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=23.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.+...|+|+|++|||||||++.|.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 445679999999999999999998643
No 347
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.00 E-value=0.045 Score=50.16 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhh
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+++..|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34567999999999999999999865
No 348
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.00 E-value=0.046 Score=50.27 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
...|+|+|.+||||||+.+.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998653
No 349
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=92.98 E-value=0.034 Score=46.18 Aligned_cols=29 Identities=21% Similarity=0.666 Sum_probs=25.8
Q ss_pred CCCceeeeccccCCCCCcccccccCCCCC
Q 010071 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (519)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (519)
.+|-|.|+.|++.|..+...|..|+++|.
T Consensus 62 ~~g~W~C~~C~~~N~a~~~~C~~C~~pkp 90 (92)
T 3gj8_B 62 PEGSWDCEVCLVQNKADSTKCIACESAKP 90 (92)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBCC
T ss_pred CCCcccCCcCCcCChhhcccccccCCCCC
Confidence 56889999999999999999999999884
No 350
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.98 E-value=0.045 Score=50.74 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~ 288 (519)
+.|+|+|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 351
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.98 E-value=0.042 Score=54.02 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|||||||++.|.+..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 59999999999999999998653
No 352
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.95 E-value=0.044 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
.|+|+|.+|+||||+.+.|....+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999999999975443
No 353
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.92 E-value=0.042 Score=53.64 Aligned_cols=22 Identities=45% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.++|+|+.|||||||++.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999864
No 354
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.91 E-value=0.047 Score=50.50 Aligned_cols=25 Identities=32% Similarity=0.179 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhh
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+...|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999744
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.90 E-value=0.048 Score=49.71 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+...|+|+|.+|+||||+.+.|....+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999975443
No 356
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.86 E-value=0.051 Score=50.47 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.2
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+...|+|+|.+|+|||||++.|....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34579999999999999999998653
No 357
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.84 E-value=0.047 Score=50.51 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhh
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999754
No 358
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.84 E-value=0.025 Score=52.10 Aligned_cols=22 Identities=50% Similarity=0.699 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.|+|+|.+|+|||||++.|++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999843
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.80 E-value=0.047 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+|+|+|.+||||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999965443
No 360
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.78 E-value=0.058 Score=49.17 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhh
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
++...|+|+|.+|+||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45567999999999999999999744
No 361
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.77 E-value=0.052 Score=50.68 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+|+|+|.+||||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999975443
No 362
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=92.71 E-value=0.021 Score=47.49 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=0.0
Q ss_pred CCceeeeccccCCCCCcccccccCCCCCc
Q 010071 48 PRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (519)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (519)
+|.|-|..|++.|..+...|.+|+++|..
T Consensus 6 ~g~W~C~~C~~~N~~~~~~C~~C~~pkp~ 34 (92)
T 3gj8_B 6 VGSWECPVCCVSNKAEDSRCVSCTSEKPG 34 (92)
T ss_dssp -----------------------------
T ss_pred CcCCCCCcCCCEeccccceecccCCCCCC
Confidence 57899999999999999999999999954
No 363
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.69 E-value=0.055 Score=49.98 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=23.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
.++..|+|+|.+|+||||+.+.|....+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999975443
No 364
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.69 E-value=0.053 Score=50.93 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
...|+|+|.+|+||||+.+.|....+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999975543
No 365
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.67 E-value=0.066 Score=50.94 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhh
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
.+..-|+|+|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34456999999999999999999866
No 366
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.63 E-value=0.033 Score=56.11 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhh
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+--.|+|+|+.|||||||++.|.+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3346999999999999999999864
No 367
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.59 E-value=0.06 Score=51.84 Aligned_cols=26 Identities=27% Similarity=0.118 Sum_probs=22.7
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
++.+|+|+|.+||||||+..+|....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999997543
No 368
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.56 E-value=0.046 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..++|+|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999854
No 369
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.55 E-value=0.23 Score=47.96 Aligned_cols=67 Identities=7% Similarity=0.096 Sum_probs=44.3
Q ss_pred CCeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEE-EEEeeccc
Q 010071 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI-VAVNKMDA 417 (519)
Q Consensus 342 ~~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiI-VVvNKiDl 417 (519)
..+.++|||||+...........+..+|.+|+|+...... .......+..++..+.+ ++ +|+|++|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~-~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELT--------AVIVEKAINMAEETNTS-VLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCC--------HHHHHHHHHHHHTTTCC-EEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccch--------HHHHHHHHHHHHhCCCC-EEEEEECCCcc
Confidence 5678999999996543222222233589999999877541 23345556666667777 55 99999985
No 370
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.53 E-value=0.052 Score=53.42 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|+|||||++.|.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998754
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.53 E-value=0.061 Score=51.85 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=22.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
.+++.|+|.|.+|+||||+.+.|....+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999975444
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.45 E-value=0.062 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
...|+|+|++|||||||++.|....+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999984433
No 373
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.43 E-value=0.065 Score=53.16 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=22.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+++..|+|+|.+|||||||.++|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999997543
No 374
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.40 E-value=0.059 Score=50.93 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
...|+|+|.+||||||+.+.|....+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999975543
No 375
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.39 E-value=0.046 Score=55.94 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
.-+++|+|..|+|||||++.|.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999986543
No 376
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.34 E-value=0.062 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
...++|+|..|||||||++.|++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 446899999999999999999965
No 377
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.29 E-value=0.063 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..|+|+|.+|+|||||+.+|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999843
No 378
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.28 E-value=0.07 Score=53.19 Aligned_cols=27 Identities=30% Similarity=0.188 Sum_probs=22.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++..|+|+|.+|+|||||++.|....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999987543
No 379
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.27 E-value=0.071 Score=54.12 Aligned_cols=28 Identities=39% Similarity=0.366 Sum_probs=23.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
..+++-|+|+|.+|||||||++.|.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4456789999999999999999987553
No 380
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.22 E-value=0.067 Score=47.77 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~ 288 (519)
..++|+|++|+|||||++.+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999984
No 381
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.20 E-value=0.058 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.++|+|+.|+|||||++.|.+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35999999999999999999865
No 382
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.17 E-value=0.075 Score=48.03 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
...|+|+|.+|+||||+.+.|....+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999975433
No 383
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.16 E-value=0.078 Score=48.86 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
...|+|+|.+|+||||+.+.|....+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999975544
No 384
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.13 E-value=0.072 Score=49.51 Aligned_cols=24 Identities=42% Similarity=0.464 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
...|+|+|.+|+|||||++.|.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999754
No 385
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.07 E-value=0.066 Score=51.80 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=22.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+++..|+|+|.+|||||||.+.|....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 445679999999999999999997544
No 386
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.04 E-value=0.054 Score=55.64 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.|+|+|++|+|||||++.|++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 35999999999999999999854
No 387
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.98 E-value=0.061 Score=54.59 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.|+|+|++|+|||||++.|++.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999854
No 388
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.98 E-value=0.072 Score=53.27 Aligned_cols=26 Identities=38% Similarity=0.415 Sum_probs=22.4
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+...|+|+|..|||||||++.|.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998753
No 389
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.93 E-value=0.063 Score=48.40 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+|+|+|.+|+||||+...|....+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999975543
No 390
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.92 E-value=0.26 Score=47.26 Aligned_cols=66 Identities=15% Similarity=0.305 Sum_probs=46.1
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
.+.++|||||+... ......+..+|.+|+|+..... -.......+..+...+.+.+-+|+|+++..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~--------~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEIS--------SITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHH--------HHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChh--------HHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 57899999998544 3445566779999999987743 123344455566666666577999999854
No 391
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.91 E-value=0.063 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
..|+|+|.+||||||+.++|....+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999975544
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.89 E-value=0.078 Score=49.59 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCchhHhHHhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~ 288 (519)
++.|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 393
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.85 E-value=0.066 Score=55.37 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|||||||++.|.+..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 49999999999999999998653
No 394
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.83 E-value=0.07 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.|+|+|++|+|||||++.|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999854
No 395
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.81 E-value=0.062 Score=49.05 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
...|+|+|.+|+||||+.+.|....+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999975543
No 396
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.79 E-value=0.075 Score=47.23 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+|+|+|.+||||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999975433
No 397
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.76 E-value=0.36 Score=45.56 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+|+|+|+|||||+|+..+|....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 589999999999999999986544
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.73 E-value=0.084 Score=47.77 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
...|+|+|.+|+||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999753
No 399
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.61 E-value=0.67 Score=47.08 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCchhHhHHhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLL 287 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl 287 (519)
.+.|.|++|+|||||.-.++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 38999999999999988876
No 400
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.59 E-value=0.07 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|||||||++.|.+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48999999999999999998653
No 401
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.54 E-value=1 Score=45.74 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=51.8
Q ss_pred CCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccccc----chhHHHHHHHHHHHHHhcCCCC
Q 010071 368 SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS----KDRFDSIKVQLGTFLRSCGFKD 443 (519)
Q Consensus 368 aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~~~----~e~le~i~e~l~~~l~~~g~~~ 443 (519)
.+.+++|.-.... ...........++..+++..-+|+|++...... ..+.+.....+..+.+.++.
T Consensus 237 ~~~~vlV~~p~~~--------~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~-- 306 (349)
T 3ug7_A 237 RTAFRLVVIPEEM--------SILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGD-- 306 (349)
T ss_dssp TEEEEEEECSSHH--------HHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTT--
T ss_pred CceEEEEECCCcc--------HHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCC--
Confidence 3667787766643 345677788888899999667999999754211 11222223444444444443
Q ss_pred CCceEEEeccccCCCcccc
Q 010071 444 ASLTWIPLSALENQNLVTA 462 (519)
Q Consensus 444 ~~i~~IpvSA~tGegI~el 462 (519)
..+..+|.....-.|+..+
T Consensus 307 ~~l~~iPl~~~e~~g~~~L 325 (349)
T 3ug7_A 307 KVIAYVPLLRTEAKGIETL 325 (349)
T ss_dssp SEEEEEECCSSCSCSHHHH
T ss_pred CcEEEecCCCCCCCCHHHH
Confidence 2345677777776776665
No 402
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.54 E-value=0.081 Score=49.48 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999975443
No 403
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.48 E-value=0.085 Score=47.79 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999753
No 404
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.48 E-value=0.08 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.|+|+|++|+|||||++.|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999999854
No 405
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.43 E-value=0.078 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|+|||||++.|.+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 49999999999999999998653
No 406
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.34 E-value=0.086 Score=47.67 Aligned_cols=24 Identities=50% Similarity=0.732 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
-.+|+|+.|+|||||+.+|.....
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999975443
No 407
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.29 E-value=0.082 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|+|||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 49999999999999999998653
No 408
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.28 E-value=0.045 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
-|+|+|.+|||||||++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999744
No 409
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.28 E-value=0.092 Score=50.83 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+++.|+|+|++|+|||||.+.|....+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999975544
No 410
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.18 E-value=0.084 Score=54.84 Aligned_cols=23 Identities=35% Similarity=0.280 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|||||||++.|.+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 49999999999999999998654
No 411
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.17 E-value=0.085 Score=54.42 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|+|||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 49999999999999999998653
No 412
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.15 E-value=0.086 Score=54.55 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|+|||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 49999999999999999998653
No 413
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.14 E-value=0.089 Score=47.90 Aligned_cols=22 Identities=32% Similarity=0.173 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
-|+|.|.+||||||+.++|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 414
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.13 E-value=0.098 Score=49.14 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
..|+|+|.+|+||||+.+.|....+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975443
No 415
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=91.12 E-value=0.05 Score=43.17 Aligned_cols=26 Identities=38% Similarity=0.922 Sum_probs=20.3
Q ss_pred ceeeeccccCCCCC---------cccccccCCCCC
Q 010071 50 VWSCAICTYDNEEG---------MSVCDICGVLRT 75 (519)
Q Consensus 50 ~w~c~~c~~~n~~~---------~~~c~~c~~~r~ 75 (519)
-|.|++|.|-|... +-.|..||+.+.
T Consensus 17 tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 17 TWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp EEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred ceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 49999999877544 456999998774
No 416
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.10 E-value=0.43 Score=47.77 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
-++|.|.+|+|||||+..|...
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3899999999999999988743
No 417
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.00 E-value=0.09 Score=54.43 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|+|||||++.|.+..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 349999999999999999998653
No 418
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.95 E-value=0.083 Score=56.95 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
...|+|+|++|||||||++.|++.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345999999999999999999854
No 419
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.90 E-value=0.091 Score=46.84 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
.|+|+|.+|+||||+.+.|....+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999975433
No 420
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.89 E-value=0.091 Score=47.60 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
.|+|+|.+|+||||+...|....+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999975433
No 421
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.88 E-value=0.11 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..|+|+|.+||||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999743
No 422
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=90.86 E-value=0.17 Score=36.28 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=27.4
Q ss_pred CCCceeee--ccccCCCCCcccccccCCCCCc
Q 010071 47 KPRVWSCA--ICTYDNEEGMSVCDICGVLRTP 76 (519)
Q Consensus 47 ~~~~w~c~--~c~~~n~~~~~~c~~c~~~r~~ 76 (519)
.+|-|.|. .|.+-|...-..|-.|+++|..
T Consensus 11 ~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~ 42 (45)
T 1n0z_A 11 SDGDWICPDKKCGNVNFARRTSCDRCGREKTT 42 (45)
T ss_dssp CSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCC
T ss_pred CCCCcCCCCCCCCCEEccccccccccCCcCCC
Confidence 57789999 8999999999999999999943
No 423
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.82 E-value=0.1 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEcCCCCCchhHhHHhhhhcc
Q 010071 269 LAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~~~ 291 (519)
|+|+|++|+|||||+++|.+..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 99999999999999999986543
No 424
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.82 E-value=0.094 Score=55.10 Aligned_cols=22 Identities=32% Similarity=0.160 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.|+|+|++|+|||||++.|++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999854
No 425
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.80 E-value=0.41 Score=45.03 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=46.4
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--CCcEEEEEeecccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAV 418 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--~ppiIVVvNKiDlv 418 (519)
.+.++|||||+.... .....+..+|.+|+|+..... -.......+..+...+ ...+.+|+|+++..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQ--------SLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHH--------HHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHH--------HHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 467999999995532 344567779999999988743 2234555566666665 34478999999854
No 426
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.79 E-value=0.12 Score=47.45 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
.|+|.|.+|+||||+.+.|....+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999976544
No 427
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.78 E-value=0.1 Score=48.45 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.++|+|++|+|||||+..|.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999843
No 428
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.74 E-value=0.12 Score=46.22 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
-+|+|+|.+|+||||+.+.|....+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999975443
No 429
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.70 E-value=0.13 Score=45.75 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCchhHhHHhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~ 288 (519)
...|+|.|++|+|||+|++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999974
No 430
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.55 E-value=0.13 Score=48.93 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
..+|+|+|.+|+||||+.++|....+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999975543
No 431
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.46 E-value=0.12 Score=49.58 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.|+|+|++|+|||||++.|.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999998543
No 432
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.45 E-value=0.11 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhcc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
.|+|+|.+|+|||||..+|....+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 489999999999999999975543
No 433
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.38 E-value=0.12 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.|+|+|.+|+||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999997543
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.36 E-value=0.14 Score=48.82 Aligned_cols=30 Identities=37% Similarity=0.520 Sum_probs=23.7
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+..+...|+|+|.+|+||||+.+.|....+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345566899999999999999999986544
No 435
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.33 E-value=0.14 Score=56.06 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=22.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHhhhh
Q 010071 263 RMTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 263 ~~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.+--.++|+|+.|+|||||++.|.+.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 344456999999999999999999864
No 436
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.31 E-value=0.1 Score=50.88 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
..+|+|+|.+|+||||+.+.|....+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35699999999999999999976444
No 437
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.31 E-value=0.11 Score=54.14 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|+|||||++.|.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 349999999999999999998653
No 438
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.31 E-value=0.079 Score=54.35 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|+|||||++.|.+..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 49999999999999999998654
No 439
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.19 E-value=0.15 Score=47.64 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
...|+|+|.+|+||||+.+.|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999743
No 440
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.16 E-value=0.13 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCchhHhHHhh
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLL 287 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl 287 (519)
+++.|+|+|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 441
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.13 E-value=0.12 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
-++|+|++|+|||||+..|.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3999999999999999999754
No 442
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.10 E-value=0.65 Score=45.94 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=48.5
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
.+.++|||||....... .......+|.+|+|+..... -.......+..+...+.+.+-+|+|++|..
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~--------~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVN--------TLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTS--------BHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCC--------cHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 35799999999654332 23345669999999998865 234566677777777877667999999865
No 443
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.08 E-value=0.17 Score=48.31 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=22.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
++..-|+|+|+|||||+|+..+|....+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3445578899999999999999975544
No 444
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.96 E-value=0.13 Score=47.90 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
++..|+|+|.+|+||||+...|....+
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345799999999999999999875443
No 445
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.84 E-value=0.13 Score=52.39 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhHhHHhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~ 288 (519)
.+.|.|++|+|||+|..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999984
No 446
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.75 E-value=0.076 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|+|||||++.|.+..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 49999999999999999998653
No 447
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.66 E-value=0.12 Score=54.91 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.|+|+|+.|+|||||++.|.+..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 49999999999999999998653
No 448
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.60 E-value=0.14 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-+++|+|+.|+|||||++.|.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998654
No 449
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.43 E-value=0.16 Score=47.00 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhHhHHhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~ 288 (519)
-++|+|++|+|||||+..|.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999985
No 450
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.36 E-value=0.15 Score=49.64 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.|+|+|++|+|||||++.|.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 39999999999999999998643
No 451
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.35 E-value=0.16 Score=47.77 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhHhHHhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~ 288 (519)
.++|+|++|+|||||+..|++
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999985
No 452
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.21 E-value=0.16 Score=55.01 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|||||||++.|.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998753
No 453
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.15 E-value=0.16 Score=55.48 Aligned_cols=25 Identities=44% Similarity=0.421 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhh
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+--.++|+|+.|+|||||++.|.+.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3346999999999999999999865
No 454
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.14 E-value=0.51 Score=48.10 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=38.4
Q ss_pred EEEEEeCCCCC--cchhhhhhccccC-CeEEEEeecCCCccc-----ccccchhHHHHHHHHHHHHhCCCcEEEEEeec
Q 010071 345 HVVVLDSPGHK--DFVPNMISGATQS-DAAILVIDASVGSFE-----VGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (519)
Q Consensus 345 ~l~LiDTPG~~--~f~~~~~~~l~~a-D~vIlVVDas~g~~e-----~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKi 415 (519)
.+.|.|+|+.. .+..........- .+-++|||.-..... .....+......+..+++.+++| ||++..+
T Consensus 129 ~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vp--Vi~lsQl 205 (338)
T 4a1f_A 129 KLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIP--IIALVQL 205 (338)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSC--EEEEEEC
T ss_pred CeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCe--EEEEEec
Confidence 57788998742 1222221122222 678888885543211 12233556677778888889988 4455443
No 455
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.05 E-value=0.2 Score=47.85 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhcc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~~ 291 (519)
+...|+|.|.+||||||++++|.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345699999999999999999986543
No 456
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.96 E-value=0.16 Score=55.40 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhh
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+--.++|+|+.|+|||||++.|.+.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3346999999999999999999865
No 457
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.92 E-value=0.16 Score=45.15 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCchhHhHHhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~ 288 (519)
...|+|+|++|+|||+|+..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999974
No 458
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.89 E-value=0.17 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|++|+|||||++.|.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 359999999999999999998765
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.84 E-value=0.2 Score=49.21 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCchhHhHHhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~ 288 (519)
..|+|+|.+|+||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999975
No 460
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.74 E-value=0.22 Score=46.48 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhh
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
.....|+|+|.+|+||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999754
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.70 E-value=0.17 Score=48.95 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
++...|+|.|..|+||||+++.|....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345679999999999999999997553
No 462
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.66 E-value=0.17 Score=55.11 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHhhhh
Q 010071 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 264 ~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
.+--.++|+|+.|+|||||++.|.+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33446999999999999999999864
No 463
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.65 E-value=0.18 Score=50.04 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=18.1
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
.+.|+|.|.+||||||+.+.|...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999754
No 464
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.59 E-value=0.15 Score=55.51 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhh
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+--.++|+|+.|+|||||++.|.+.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3346999999999999999999864
No 465
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.58 E-value=0.18 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-.++|+|+.|||||||++.|.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 348999999999999999998653
No 466
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.56 E-value=1.3 Score=44.77 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
--+.|+|++|+|||||+..|...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999998853
No 467
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.54 E-value=0.22 Score=47.70 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
+..|+|+|++|+|||||+++|.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345999999999999999999743
No 468
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.40 E-value=0.18 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|||||||++.|.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 49999999999999999998753
No 469
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.39 E-value=0.22 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..|.|.|++|+|||+|+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998743
No 470
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.25 E-value=0.21 Score=44.39 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhHhHHhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~ 288 (519)
-.+|+|+.|+|||||+.+|..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999974
No 471
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.25 E-value=0.65 Score=48.73 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
-++|.|++|+|||||+..|...
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3899999999999999988743
No 472
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.17 E-value=1.1 Score=45.62 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
..|+|+|++|+|||||...|....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 469999999999999999998544
No 473
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.08 E-value=0.52 Score=48.10 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCchhHhHHhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~ 288 (519)
--+.|.|++|+|||||+..|+.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999998874
No 474
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.03 E-value=0.21 Score=52.74 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCchhHhHHhhhhc
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
-+++|+|+.|+|||||++.|.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 359999999999999999998654
No 475
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.01 E-value=0.18 Score=55.04 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
--.++|+|+.|+|||||++.|.+.
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999864
No 476
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.95 E-value=0.2 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.183 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|+|||||++.|.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 49999999999999999998754
No 477
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.79 E-value=0.52 Score=48.53 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCchhHhHHhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~ 288 (519)
-|.|.|++|+|||||...|+.
T Consensus 76 li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 488899999999999998873
No 478
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.74 E-value=0.22 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|+|||||++.|.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 59999999999999999998754
No 479
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.67 E-value=0.22 Score=51.07 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.8
Q ss_pred EEEEcCCCCCchhHhHHhhhh
Q 010071 269 LAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 269 IvIVG~~gAGKSTLInrLl~~ 289 (519)
++|+|+.|||||||+++|...
T Consensus 26 ~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 669999999999999999744
No 480
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.48 E-value=0.48 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCchhHhHHhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~ 288 (519)
.-+.|.|.+|+|||||...|+.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998874
No 481
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.45 E-value=0.7 Score=44.23 Aligned_cols=22 Identities=27% Similarity=0.123 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCchhHhHHhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~ 288 (519)
.-+++.|++|+||||++-+++.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 4588899999999998887764
No 482
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.23 E-value=0.26 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.++|+|+.|+|||||++.|.+.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999864
No 483
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.22 E-value=0.82 Score=44.72 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=45.4
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
.+.++|||||+...... ....+..+|.+|+|+..... -..........+...+.+.+-+|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~--------~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENN--------NKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSC--------CHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCC--------cHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 36799999999654321 22233568999999998865 234556666777777776333899999864
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.22 E-value=0.28 Score=46.70 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
...|+|.|..|+||||+++.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999998554
No 485
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=87.21 E-value=0.44 Score=34.84 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=28.7
Q ss_pred ceeeeccccCCCCCcccccccCCCCCccccCC
Q 010071 50 VWSCAICTYDNEEGMSVCDICGVLRTPLVNNN 81 (519)
Q Consensus 50 ~w~c~~c~~~n~~~~~~c~~c~~~r~~~~~~~ 81 (519)
.|+|.-|---|.+.+..|..|=.+|...+.-.
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd~ 42 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCWALRKDWYSDC 42 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTCCBCCCCCCCC
T ss_pred eeecccccccCCCccchhHHHHHhhcccCCCc
Confidence 69999999999999999999999998765543
No 486
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.17 E-value=0.24 Score=59.35 Aligned_cols=29 Identities=31% Similarity=0.234 Sum_probs=23.5
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHhhhh
Q 010071 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 261 ~~~~~~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
..-.+--+|+|||++|+|||||++.|++.
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 33445567999999999999999999843
No 487
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.14 E-value=0.29 Score=49.57 Aligned_cols=26 Identities=35% Similarity=0.272 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 265 ~~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
+..-|+|+|++|+|||||..+|....
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC
Confidence 34568999999999999999998543
No 488
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=87.10 E-value=0.67 Score=43.97 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=43.7
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhC--------CCcEEEEEee
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--------VDQLIVAVNK 414 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--------~ppiIVVvNK 414 (519)
.+.++|+|||+... ......+..+|.+|+|+..... -.......+..+...+ ...+.+|+|+
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~--------s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~ 182 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVS--------SVRDSDRILGILASKSRRAENGEEPIKEHLLLTR 182 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHH--------HHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChh--------HHHHHHHHHHHHHHhccccccccCCcceEEEEec
Confidence 67899999998543 3455667789999999998743 1123334444444332 1347899999
Q ss_pred cccc
Q 010071 415 MDAV 418 (519)
Q Consensus 415 iDlv 418 (519)
++..
T Consensus 183 ~~~~ 186 (260)
T 3q9l_A 183 YNPG 186 (260)
T ss_dssp ECHH
T ss_pred CCcc
Confidence 9854
No 489
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.99 E-value=0.3 Score=50.60 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhhc
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~~ 290 (519)
...|+|+|++|+|||||++.|.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3469999999999999999998543
No 490
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.94 E-value=0.26 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhhc
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~~ 290 (519)
.++|+|+.|+|||||++.|.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998653
No 491
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.76 E-value=4.1 Score=41.45 Aligned_cols=84 Identities=20% Similarity=0.117 Sum_probs=47.2
Q ss_pred CeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeeccccc-c--c----chhHHHHHHHHHHHHHhcCC
Q 010071 369 DAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ-Y--S----KDRFDSIKVQLGTFLRSCGF 441 (519)
Q Consensus 369 D~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv~-~--~----~e~le~i~e~l~~~l~~~g~ 441 (519)
+.+++|.-.... ...........+...+++..-+|+|++.-.. . . ..+.+.-...+..+...+.
T Consensus 232 t~~vlVt~pe~~--------~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~- 302 (348)
T 3io3_A 232 TTFICVCISEFL--------SLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYE- 302 (348)
T ss_dssp EEEEEEEESSHH--------HHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred eEEEEEecCCcc--------HHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHcc-
Confidence 467777666532 3356777778888899986779999987532 0 1 1122222333333333332
Q ss_pred CCCCceEEEeccccCCCcccc
Q 010071 442 KDASLTWIPLSALENQNLVTA 462 (519)
Q Consensus 442 ~~~~i~~IpvSA~tGegI~el 462 (519)
...+..+|.-+..=.|+..|
T Consensus 303 -~~~~~~~pl~~~e~~G~~~L 322 (348)
T 3io3_A 303 -DYHLVKMPLLGCEIRGVENL 322 (348)
T ss_dssp -TSEEEEEECCSSCCCSHHHH
T ss_pred -CCCEEEecCCCCCCCCHHHH
Confidence 22234456666666666665
No 492
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.76 E-value=0.27 Score=47.94 Aligned_cols=23 Identities=30% Similarity=0.161 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCchhHhHHhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~ 288 (519)
--.++|+|++|+|||||+..|++
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34599999999999999999985
No 493
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=86.74 E-value=0.29 Score=35.03 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=27.9
Q ss_pred CceeeeccccCCCCCcccccccCCCCCcccc
Q 010071 49 RVWSCAICTYDNEEGMSVCDICGVLRTPLVN 79 (519)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~r~~~~~ 79 (519)
..|+|.-|.--|.+.+..|..|=.+|...+.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk~Wlp 42 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALRENWLP 42 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCSSCSC
T ss_pred ceEecccccccCCCccchhhHHHhhccccCC
Confidence 4599999999999999999999999987554
No 494
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.69 E-value=0.29 Score=44.90 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCchhHhHHhhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~~ 289 (519)
.|+|.|++|+|||||+..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 495
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.65 E-value=0.29 Score=53.89 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCchhHhHHhhhh
Q 010071 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 267 ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
-.++|+|+.|+|||||++.|.+.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 496
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=86.60 E-value=1.9 Score=46.76 Aligned_cols=177 Identities=10% Similarity=0.033 Sum_probs=0.0
Q ss_pred CcccceEEEEEcCCCCCchhHhHHhhhhcccccccchhhhhHHHHhhCCCccchhhcccccccccccceEEEEEEEeec-
Q 010071 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD- 340 (519)
Q Consensus 262 ~~~~~ikIvIVG~~gAGKSTLInrLl~~~~~i~~~~v~~~~~~a~~~g~~s~~~a~~~d~~~~e~~~GiT~~~~~~~~~- 340 (519)
......-+++.|..|+||||+.-.|. ......|+.......-. .......-+.........+.
T Consensus 4 ~~~~~~i~~~sgkGGvGKTT~a~~lA---------------~~lA~~G~rVLlvd~D~-~~~l~~~l~~~~~~~~~~v~~ 67 (589)
T 1ihu_A 4 LQNIPPYLFFTGKGGVGKTSISCATA---------------IRLAEQGKRVLLVSTDP-ASNVGQVFSQTIGNTIQAIAS 67 (589)
T ss_dssp GSSCCSEEEEECSTTSSHHHHHHHHH---------------HHHHHTTCCEEEEECCT-TCCHHHHTTSCCCSSCEECTT
T ss_pred CCCCCEEEEEeCCCcCHHHHHHHHHH---------------HHHHHCCCcEEEEECCC-CcCHHHHhCCcccCCCceecc
Q ss_pred -----------------------------------------------------------------CCCeEEEEEeCCCCC
Q 010071 341 -----------------------------------------------------------------SKNYHVVVLDSPGHK 355 (519)
Q Consensus 341 -----------------------------------------------------------------~~~~~l~LiDTPG~~ 355 (519)
...+.++|+|||+..
T Consensus 68 ~~~l~~~~~d~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~ 147 (589)
T 1ihu_A 68 VPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTG 147 (589)
T ss_dssp STTEEEEECCHHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCH
T ss_pred chhhhhccCCHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCch
Q ss_pred cchhhhh--------------------------------------hccccCCeEEEEeecCCCcccccccchhHHHHHHH
Q 010071 356 DFVPNMI--------------------------------------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 397 (519)
Q Consensus 356 ~f~~~~~--------------------------------------~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l 397 (519)
.....+. ..-...+.+++|+..... ........+
T Consensus 148 ~~lrll~lP~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~--------~~~~~~~~~ 219 (589)
T 1ihu_A 148 HTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKS--------TLQEVARTH 219 (589)
T ss_dssp HHHHHHHCGGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHH--------HHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCcc--------HHHHHHHHH
Q ss_pred HHHHHhCCCcEEEEEeecccccc--cchhHHHHHHHHHHHHHhcC--CCCCCceEEEeccccCCCcccc
Q 010071 398 QLIRSFGVDQLIVAVNKMDAVQY--SKDRFDSIKVQLGTFLRSCG--FKDASLTWIPLSALENQNLVTA 462 (519)
Q Consensus 398 ~ll~~~~~ppiIVVvNKiDlv~~--~~e~le~i~e~l~~~l~~~g--~~~~~i~~IpvSA~tGegI~el 462 (519)
..+...+.+..-+|+|++.-... .....+........++..+. +....+..+|.-+..-.|+..+
T Consensus 220 ~~L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~vPl~~~e~~g~~~l 288 (589)
T 1ihu_A 220 LELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNMVGVSAL 288 (589)
T ss_dssp HHHHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCCHHHHTSCEEEEECCSSCCCSHHHH
T ss_pred HHHHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHHHHhccCCCEEEecCCCCCCCCHHHH
No 497
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=85.97 E-value=1.3 Score=43.90 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=45.9
Q ss_pred CeEEEEEeCCCCCcchhhhhhccccCCeEEEEeecCCCcccccccchhHHHHHHHHHHHHhCCCcEEEEEeecccc
Q 010071 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (519)
Q Consensus 343 ~~~l~LiDTPG~~~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~~ppiIVVvNKiDlv 418 (519)
.+.++|||||+...... .......+|.+|+|+..... -.......+..+...+.+.+-+|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~--------~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN--------TAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS--------CTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC--------hHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 35799999999654322 22234569999999988755 234555666677777776444889999864
No 498
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.92 E-value=0.34 Score=43.95 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhHhHHhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~ 288 (519)
.|+|.|++|+|||+|+..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999874
No 499
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.78 E-value=0.33 Score=45.58 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCchhHhHHhhh
Q 010071 268 NLAIVGHVDSGKSTLSGRLLF 288 (519)
Q Consensus 268 kIvIVG~~gAGKSTLInrLl~ 288 (519)
-++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888763
No 500
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.74 E-value=0.4 Score=46.41 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCchhHhHHhhhh
Q 010071 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (519)
Q Consensus 266 ~ikIvIVG~~gAGKSTLInrLl~~ 289 (519)
...|.|.|++|+|||+|+++|...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999754
Done!