BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010072
(519 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 154 bits (390), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 136/519 (26%), Positives = 248/519 (47%), Gaps = 78/519 (15%)
Query: 2 QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVR 61
++N+ + +SQ + D + + + + ++ + L +A +IAT+ A+L+E+P VR
Sbjct: 144 EINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIATLCATLKEYPAVR 202
Query: 62 YRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQ---SIENFPQTETCDLLILDRSVD 118
YR + + + LI KL A YK ++ P LLILDR D
Sbjct: 203 YRGEYKDNAL----LAQLIQDKLDA--------YKADDPTMGEGPDKARSQLLILDRGFD 250
Query: 119 QVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHI 178
+P++HE T+ A+ DLL +E + Y +E + G KEVLL+E D LW+ LRH HI
Sbjct: 251 PSSPVLHELTFQAMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDDDLWIALRHKHI 308
Query: 179 ADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVE 238
A+ S+ + + F S + G + + +DL +M++ +PQY ++ K S H+
Sbjct: 309 AEVSQEVTRSLKDFSSSKR-------MNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLH 361
Query: 239 IA--------GKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVSRENKLRL 290
+A G ++K+ D ++ +V + +VS +K+R+
Sbjct: 362 LAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDP-MRAIVPIL-LDANVSTYDKIRI 419
Query: 291 LMILAAIYPEKFQGEKGQN-IMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFD 349
IL I+ + E+ N +++ A++ +D + NM LG I ST
Sbjct: 420 --ILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVP--IVTDST-------- 467
Query: 350 INKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQ 409
+ ++ + RK+R EQT+QLSR+ P+I++++E + +L YP ++ S
Sbjct: 468 LRRRSKPERKERIS-EQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRS-------- 518
Query: 410 SAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGAT 469
SA+ S V S R W + + A +++ G R+ +FI+GG +
Sbjct: 519 SASFSTTAV-----SARYGHWHKNK--------------APGEYRS-GPRLIIFILGGVS 558
Query: 470 RSELRVCHKLTRKLNR-EIILGSTSLDDPPQFITKMKML 507
+E+R +++T+ + E+++GST + P + + +K L
Sbjct: 559 LNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKL 597
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 136/519 (26%), Positives = 248/519 (47%), Gaps = 78/519 (15%)
Query: 2 QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVR 61
++N+ + +SQ + D + + + + ++ + L +A +IAT+ A+L+E+P VR
Sbjct: 132 EINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIATLCATLKEYPAVR 190
Query: 62 YRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQ---SIENFPQTETCDLLILDRSVD 118
YR + + + LI KL A YK ++ P LLILDR D
Sbjct: 191 YRGEYKDNAL----LAQLIQDKLDA--------YKADDPTMGEGPDKARSQLLILDRGFD 238
Query: 119 QVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHI 178
+P++HE T+ A+ DLL +E + Y +E + G KEVLL+E D LW+ LRH HI
Sbjct: 239 PSSPVLHELTFQAMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDDDLWIALRHKHI 296
Query: 179 ADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVE 238
A+ S+ + + F S + G + + +DL +M++ +PQY ++ K S H+
Sbjct: 297 AEVSQEVTRSLKDFSSSKR-------MNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLH 349
Query: 239 IA--------GKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVSRENKLRL 290
+A G ++K+ D ++ +V + +VS +K+R+
Sbjct: 350 LAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDP-MRAIVPIL-LDANVSTYDKIRI 407
Query: 291 LMILAAIYPEKFQGEKGQN-IMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFD 349
IL I+ + E+ N +++ A++ +D + NM LG I ST
Sbjct: 408 --ILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVP--IVTDST-------- 455
Query: 350 INKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQ 409
+ ++ + RK+R EQT+QLSR+ P+I++++E + +L YP ++ S
Sbjct: 456 LRRRSKPERKERIS-EQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRS-------- 506
Query: 410 SAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGAT 469
SA+ S V S R W + + A +++ G R+ +FI+GG +
Sbjct: 507 SASFSTTAV-----SARYGHWHKNK--------------APGEYRS-GPRLIIFILGGVS 546
Query: 470 RSELRVCHKLTRKLNR-EIILGSTSLDDPPQFITKMKML 507
+E+R +++T+ + E+++GST + P + + +K L
Sbjct: 547 LNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKL 585
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 243/521 (46%), Gaps = 74/521 (14%)
Query: 2 QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVR 61
++N+ + +SQ F D + ++ + ++ G A +IAT+ A+L E+P VR
Sbjct: 129 EINIAFLPYESQIFSLDSPDTFQ-VYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVR 187
Query: 62 YRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQ---SIENFPQTETCDLLILDRSVD 118
YR+ D +F+ L+ KL A Y+ ++ PQ + LLILDR D
Sbjct: 188 YRS----DFDENASFAQLVQQKLDA--------YRADDPTMGEGPQKDRSQLLILDRGFD 235
Query: 119 QVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGP--PEKKEVLLEEHDPLWLELRHA 176
++P++HE T+ A+ DLL +E + Y + TGG PEK EVLL+E D LW+E+RH
Sbjct: 236 PISPLLHELTFQAMAYDLLPIENDVYKY---VNTGGNEVPEK-EVLLDEKDDLWVEMRHQ 291
Query: 177 HIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLH 236
HIA S+ + +K+ F + + A KDL +M++ +PQY ++ K S H
Sbjct: 292 HIAVVSQNVTKKLKQFADEKRMGTAADKA------GIKDLSQMLKKMPQYQKELSKYSTH 345
Query: 237 VEIAGKINKIIXXXXXXXXXXXXXXXVFGDAG-------LKDVVKFFTTNEDVSRENKLR 289
+ +A K + DA ++++V ++ +S +K+R
Sbjct: 346 LHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPIL-LDQKISAYDKIR 404
Query: 290 LLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFD 349
+++ L I+ E +++ A + +++ +N+M+ L G I+ +
Sbjct: 405 IIL-LYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNL-GVPIIQDGGRRKIPQPYH 462
Query: 350 INKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQ 409
+ RK+R + T+Q+SR+ P +++++E + +L YP +N P
Sbjct: 463 THN-----RKERQA-DHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPR------ 510
Query: 410 SAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGAT 469
P S R W + D G +S K G R+ +F+VGG +
Sbjct: 511 -------PSCQQPVSVRYGHW----HKDKGQAS-----------YKSGPRLIIFVVGGIS 548
Query: 470 RSELRVCHKLTR--KLNREIILGSTSLDDPPQFITKMKMLT 508
SE+R +++T+ K N E+ILGST + P + ++ ++
Sbjct: 549 YSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKIS 589
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/519 (22%), Positives = 239/519 (46%), Gaps = 44/519 (8%)
Query: 2 QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVR 61
++N + + + F ++ L + +G SR ++ + R++T+ ++ P+VR
Sbjct: 128 EINTLFIPKEHRVFTLNEPHGLVQYYG----SRSSSYNIDHLVRRLSTLCTTMNVAPIVR 183
Query: 62 YRAAKSLDTMTMTT-FSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQV 120
Y + + T M I ++ G+ N +S LILDR+VD
Sbjct: 184 YSSTSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKS----------QFLILDRAVDLK 233
Query: 121 APIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIAD 180
+P++HE TY A DLLN+E + Y + GG ++++V+L E D +WL++RH HI++
Sbjct: 234 SPLVHELTYQAAAYDLLNIENDIYSYST-VDAGGREQQRQVVLGEDDDIWLQMRHLHISE 292
Query: 181 ASERLHEKMTSF-ISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEI 239
++ F +S + ++ S + GE L++M++ LPQ+ +Q+ K SLH+++
Sbjct: 293 VFRKVKSSFDEFCVSARRLQGLRDSQQ--GEGGAGALKQMLKDLPQHREQMQKYSLHLDM 350
Query: 240 AGKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFF------TTNEDVSRENKLRLLMI 293
+ IN + V F + VS E+KLR LM
Sbjct: 351 SNAINMAFSSTIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLM- 409
Query: 294 LAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKK 353
L + + N++ A + + +A+ N+ +LG ++ D +
Sbjct: 410 LCVLAKNGTSSHELNNLLDNANIATPSRSAIYNLEMLGA------------TVVADRRGR 457
Query: 354 KRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAI 413
K K R + + LSR+ P++++L+E + +L + YP + + V K S ++
Sbjct: 458 KPKTMK-RIERDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSV 516
Query: 414 SQPPVAHSMRSRRTPTWARPRNSDDGYSSD----SVLRHASSDFKKMGQ-RIFVFIVGGA 468
+ + +R+ WA+ + ++ S +V + ++ + + ++FVFI G
Sbjct: 517 EEDDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTV 576
Query: 469 TRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKML 507
+ +E+R +++++ E+ +G+ ++ P +F+ + +L
Sbjct: 577 SYNEIRCAYEVSQSSGYEVYIGAHNIATPAEFVELVSLL 615
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 134/521 (25%), Positives = 231/521 (44%), Gaps = 74/521 (14%)
Query: 2 QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVR 61
++N+ + +SQ F D + ++ + ++ G A +IAT+ A+L E+P VR
Sbjct: 129 EINIAFLPYESQIFSLDSPDTFQ-VYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVR 187
Query: 62 YRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQ---SIENFPQTETCDLLILDRSVD 118
YR+ D +F+ L+ KL A Y+ + PQ + LLILDR D
Sbjct: 188 YRS----DFDENASFAQLVQQKLDA--------YRADDPTXGEGPQKDRSQLLILDRGFD 235
Query: 119 QVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGP--PEKKEVLLEEHDPLWLELRHA 176
++P++HE T+ A DLL +E + Y + TGG PEK EVLL+E D LW+E RH
Sbjct: 236 PISPLLHELTFQAXAYDLLPIENDVYKY---VNTGGNEVPEK-EVLLDEKDDLWVEXRHQ 291
Query: 177 HIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLH 236
HIA S+ + +K+ F + + A KDL + ++ PQY ++ K S H
Sbjct: 292 HIAVVSQNVTKKLKQFADEKRXGTAADKA------GIKDLSQXLKKXPQYQKELSKYSTH 345
Query: 237 VEIAGKINKIIXXXXXXXXXXXXXXXVFGDAG-------LKDVVKFFTTNEDVSRENKLR 289
+ +A K DA +++V ++ +S +K+R
Sbjct: 346 LHLAEDCXKQYQQHVDKLCKVEQDLAXGTDADGEKIRDHXRNIVPIL-LDQKISAYDKIR 404
Query: 290 LLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFD 349
+++ L I+ E +++ A + +++ +N+ + L G I+ +
Sbjct: 405 IIL-LYIIHKGGISEENLAKLVQHAHIPAEEKWIINDXQNL-GVPIIQDGGRRKIPQPYH 462
Query: 350 INKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQ 409
+ RK+R + T+Q SR+ P +++ E + +L YP +N P
Sbjct: 463 THN-----RKERQA-DHTYQXSRWTPYXKDIXEAAVEDKLDTRHYPFLNGGGPR------ 510
Query: 410 SAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGAT 469
P S R W + D G +S K G R+ +F+VGG +
Sbjct: 511 -------PSCQQPVSVRYGHWHK----DKGQAS-----------YKSGPRLIIFVVGGIS 548
Query: 470 RSELRVCHKLTR--KLNREIILGSTSLDDPPQFITKMKMLT 508
SE R +++T+ K N E+ILGST + P + ++ ++
Sbjct: 549 YSEXRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKIS 589
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 140/533 (26%), Positives = 239/533 (44%), Gaps = 94/533 (17%)
Query: 2 QMNLEYFAIDSQGFVTDDERALEELFG-DEENSRRGDACLNVMASRIATVFASLREFPLV 60
++N+ + +SQ + D A + D N+ R + + MA +I TV A+L E P V
Sbjct: 135 EINISFIPQESQVYTLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGV 194
Query: 61 RYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKY-----KQSIENFPQTETCDLLILDR 115
RY++ K LD + KLA V L Y K I+ Q++ LLI+DR
Sbjct: 195 RYKS-KPLDNAS----------KLAQLVEKKLEDYYKIDEKGLIKGKTQSQ---LLIIDR 240
Query: 116 SVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRH 175
D V+ ++HE T+ A+ DLL +E + Y + KT G ++KE +LEE D LW+ +RH
Sbjct: 241 GFDPVSTVLHELTFQAMAYDLLPIENDTYKY----KTDG--KEKEAVLEEDDDLWVRVRH 294
Query: 176 AHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSL 235
HIA E + + M S KA + G+ S L ++++ +P + QI K +
Sbjct: 295 RHIAVVLEEIPKLMKEISSTKKATE--------GKTSLSALTQLMKKMPHFRKQISKQVV 346
Query: 236 HVEIAG--------KINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVSRENK 287
H+ +A I K+ D+ L + N D + +
Sbjct: 347 HLNLAEDCMNKFKLNIEKLCKTEQDLALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIR 406
Query: 288 LRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLK 347
LL I G +N+ +L ++N+++ + I+ S +
Sbjct: 407 AVLLYIFG------INGTTEENLDRL----------IHNVKIEDDSDMIRNWSHLGVPI- 449
Query: 348 FDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYP-CMNEPSPTVHA 406
+++ + +RKDR+ EE T+QLSR+ P I++++E L ++P C P+
Sbjct: 450 VPPSQQAKPLRKDRSAEE-TFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPA----V 504
Query: 407 KNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVG 466
N S A+S AR + + D +K G R+ +F++G
Sbjct: 505 WNGSGAVS----------------ARQKPRTNYLELD----------RKNGSRLIIFVIG 538
Query: 467 GATRSELRVCHKLTRKLNR-EIILGSTSLDDPPQFITKMKML--TVDELSLDD 516
G T SE+R +++++ E+I+GST + P + + +KML + D++S D
Sbjct: 539 GITYSEMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKMLNKSKDKVSFKD 591
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 29/219 (13%)
Query: 39 CLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQS 98
C N+ TV ++ P++R AAK ++ + TKL V N +
Sbjct: 201 CANIADGLFNTVL-TINSIPIIR--AAKG---GPAEIIAEKLGTKLRDFVINTNSSSTST 254
Query: 99 IENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGG---- 154
++ E L+ILDR++D + H W Y D+ + N + SK G
Sbjct: 255 LQGNDSLERGVLIILDRNIDFASXFSHSWIYQCXVFDIFKLSRNTVTIPLESKENGTDNT 314
Query: 155 ---PPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGEL 211
P K+ +E +D W E H +A+E + + ++ K +AA+I R G
Sbjct: 315 TAKPLATKKYDIEPNDFFWXENSHLPFPEAAENVEAALNTY--KEEAAEI---TRKTGVT 369
Query: 212 STKDL-----------QKMVQALPQYSDQIDKLSLHVEI 239
+ DL Q++V+ LP+ + + + + H I
Sbjct: 370 NISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHXNI 408
>pdb|3BYV|A Chain A, Crystal Structure Of Toxoplasma Gondii Specific Rhoptry
Antigen Kinase Domain
Length = 377
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 324 VNNMRLLGGASDIKKSSTGA-FSLKFDINK--KKRAVRKDRTGEEQTWQLSRF--YPMIE 378
V +RLL G + K++ F FD+ K +K+ + + R E W LSRF YP ++
Sbjct: 124 VLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQ 183
Query: 379 ELIEKLGK 386
++ G+
Sbjct: 184 SNLQTFGE 191
>pdb|3DZO|A Chain A, Crystal Structure Of A Rhoptry Kinase From Toxoplasma
Gondii
Length = 413
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 324 VNNMRLLGGASDIKKSSTGA-FSLKFDINK---KKRAVRKDRTGEEQTWQLSRF--YPMI 377
V +RLL G + K++ F FD+ K KK+ +R R E W LSRF YP +
Sbjct: 129 VLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRV-RLDERDMWVLSRFFLYPRM 187
Query: 378 EELIEKLGK 386
+ ++ G+
Sbjct: 188 QSNLQTFGE 196
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 391 KDDYPCMNEPS-------PTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSD 443
+ +PC +EP+ +H N +A + PP S P W+ S
Sbjct: 151 RKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETTPVMST 210
Query: 444 SVLRHASSDFKKMGQ 458
+L + S+F+ + +
Sbjct: 211 YLLAYIVSEFQSVNE 225
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 391 KDDYPCMNEPS-------PTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSD 443
+ +PC +EP+ +H N +A + PP S P W+ S
Sbjct: 151 RKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETTPVMST 210
Query: 444 SVLRHASSDFKKMGQ 458
+L + S+F+ + +
Sbjct: 211 YLLAYIVSEFQSVNE 225
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 456 MGQRIFV------FIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMK 505
MGQ + + F V R++ +V H L + + I+G+TS++D FI+K+K
Sbjct: 21 MGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIED---FISKLK 73
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 391 KDDYPCMNEPS-------PTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSD 443
+ +PC +EP+ +H N +A + PP S P W+ S
Sbjct: 152 RKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETTPVMST 211
Query: 444 SVLRHASSDFKKMGQ 458
+L + S+F+ + +
Sbjct: 212 YLLAYIVSEFQSVNE 226
>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila.
pdb|4EPP|B Chain B, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila
Length = 477
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 355 RAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKREL 389
+AV + EEQT+ L +F P I +L+ K+ K++L
Sbjct: 92 KAVFEQLDKEEQTYFLEQFIPKICQLVLKIKKKQL 126
>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor
Complex From Tetrahymena Thermophila
Length = 477
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 355 RAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKREL 389
+AV + EEQT+ L +F P I +L+ K+ K++L
Sbjct: 92 KAVFEQLDKEEQTYFLEQFIPKICQLVLKIKKKQL 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,391,486
Number of Sequences: 62578
Number of extensions: 569073
Number of successful extensions: 1323
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1283
Number of HSP's gapped (non-prelim): 19
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)