Query 010072
Match_columns 519
No_of_seqs 160 out of 965
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 20:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1300 Vesicle trafficking pr 100.0 6.3E-79 1.4E-83 624.7 42.7 451 2-508 127-585 (593)
2 PF00995 Sec1: Sec1 family; I 100.0 1.7E-72 3.7E-77 616.3 36.1 440 1-504 101-564 (564)
3 KOG1299 Vacuolar sorting prote 100.0 4.2E-68 9.1E-73 527.0 38.0 415 1-507 123-548 (549)
4 KOG1302 Vacuolar sorting prote 100.0 3.3E-68 7.1E-73 547.7 33.5 436 2-504 140-599 (600)
5 COG5158 SEC1 Proteins involved 100.0 1.8E-64 3.9E-69 528.8 38.0 439 1-510 127-580 (582)
6 KOG1301 Vesicle trafficking pr 100.0 1.1E-59 2.4E-64 472.5 33.8 441 2-511 146-618 (621)
7 PRK05581 ribulose-phosphate 3- 57.5 14 0.0003 35.1 4.2 44 460-507 171-214 (220)
8 PRK08883 ribulose-phosphate 3- 53.2 17 0.00037 34.9 4.0 45 459-507 167-211 (220)
9 PF14071 YlbD_coat: Putative c 51.4 16 0.00035 31.5 3.1 14 161-174 32-45 (124)
10 cd00564 TMP_TenI Thiamine mono 50.4 18 0.0004 33.2 3.7 45 459-507 150-194 (196)
11 PLN02334 ribulose-phosphate 3- 49.8 17 0.00037 35.0 3.5 44 460-507 175-218 (229)
12 PRK00043 thiE thiamine-phospha 42.7 25 0.00055 32.9 3.4 43 460-506 161-203 (212)
13 TIGR01163 rpe ribulose-phospha 39.2 39 0.00084 31.6 4.1 44 460-507 166-209 (210)
14 PTZ00170 D-ribulose-5-phosphat 36.8 37 0.00079 32.7 3.5 44 459-506 173-216 (228)
15 TIGR00693 thiE thiamine-phosph 36.6 42 0.00091 31.1 3.8 42 460-505 153-194 (196)
16 PRK08745 ribulose-phosphate 3- 34.3 56 0.0012 31.4 4.3 45 458-506 170-214 (223)
17 TIGR03128 RuMP_HxlA 3-hexulose 33.7 46 0.00099 31.2 3.6 43 459-505 158-200 (206)
18 PF12327 FtsZ_C: FtsZ family, 33.5 77 0.0017 25.9 4.4 36 457-492 36-76 (95)
19 cd00429 RPE Ribulose-5-phospha 31.9 63 0.0014 30.1 4.2 44 460-507 167-210 (211)
20 PRK13307 bifunctional formalde 30.5 55 0.0012 34.3 3.8 40 458-501 329-368 (391)
21 cd04726 KGPDC_HPS 3-Keto-L-gul 29.9 70 0.0015 29.7 4.2 44 458-505 157-200 (202)
22 PRK10039 hypothetical protein; 26.9 1.3E+02 0.0027 26.2 4.7 40 466-505 81-125 (127)
23 PF10087 DUF2325: Uncharacteri 25.7 1.6E+02 0.0035 23.9 5.1 48 456-506 47-95 (97)
24 PRK08091 ribulose-phosphate 3- 23.3 1.1E+02 0.0024 29.5 4.2 45 458-506 178-222 (228)
25 PRK13306 ulaD 3-keto-L-gulonat 22.5 86 0.0019 29.9 3.3 41 462-506 166-206 (216)
26 PF13241 NAD_binding_7: Putati 20.6 73 0.0016 26.3 2.1 45 462-512 10-54 (103)
27 COG3793 TerB Tellurite resista 20.5 4.3E+02 0.0094 23.5 6.9 34 284-318 103-139 (144)
28 PRK01130 N-acetylmannosamine-6 20.2 1.4E+02 0.003 28.4 4.2 43 460-506 174-217 (221)
No 1
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-79 Score=624.73 Aligned_cols=451 Identities=42% Similarity=0.656 Sum_probs=381.1
Q ss_pred ceeeeeeecCCCeEEeCCCcchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCCCceEEEecCCCcccccccccccchH
Q 010072 2 QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIP 81 (519)
Q Consensus 2 E~~~df~~ld~~lfsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~ 81 (519)
|+|++|+|+|+++|+++.|++|..+|.+. +.......++.+|++|++||+++|++|.|||++.....+ ..+|
T Consensus 127 einl~F~p~ESqvF~~~~~~~~~~~y~~~-~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~a-------s~l~ 198 (593)
T KOG1300|consen 127 EINLAFIPYESQVFTLDSPDAFLQLYSPD-NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNA-------SELA 198 (593)
T ss_pred ecccccceecceeeeecChhhHHHhcCch-hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCH-------HHHH
Confidence 78999999999999999999999999965 566778899999999999999999999999998865443 2689
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEeeccCCCCCCCcceeE
Q 010072 82 TKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEV 161 (519)
Q Consensus 82 ~~la~~l~~~l~~~~~~~~~~~~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~ 161 (519)
+++|..+++.+..++...+.+|..+++.|||+||++|+++||||+||||||+||+++|++|+|.++.+...|+ +++++
T Consensus 199 ~~va~~l~~~~~~~~~~~~~~p~~~~seLlIlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~--~kk~v 276 (593)
T KOG1300|consen 199 QKVAAKLWDAYKAYKPSIGNGPQKTRSELLILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGE--KKKEV 276 (593)
T ss_pred HHHHHHHHHHHHhcccccCCCCCcccceEEEEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCC--cccee
Confidence 9999999999998886666777777999999999999999999999999999999999999999987655553 37889
Q ss_pred eCCCCChHHHHhhcCcHHHHHHHHHHHHHHHHHhhHHHhhhhcccCCCCCCHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Q 010072 162 LLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAG 241 (519)
Q Consensus 162 ~l~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~ 241 (519)
+|+++|++|-++||+||++|.+.|++.+++|.++++..+. +++..|+.|+.++|++||+|+++..+++.|++||+
T Consensus 277 llde~D~~WveLRH~HIadvse~l~~~~k~f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~ 351 (593)
T KOG1300|consen 277 LLDEDDDLWVELRHKHIADVSERLTKKMKNFSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAE 351 (593)
T ss_pred ecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765433 23457999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhcCCC-chH-------HHHHhhhcCCCCChhhHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 010072 242 KINKIIRELRLRELGQLEQDLVFGDA-GLK-------DVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKL 313 (519)
Q Consensus 242 ~i~~~~~~~~l~~~~~lEq~i~~g~~-~~~-------~~~~~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~llq~ 313 (519)
+|++.++. .+.+++.+||++++|.+ ..+ .+++.+. ....+..||+|++++|.+. .+|+...++.+|+++
T Consensus 352 eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~ 428 (593)
T KOG1300|consen 352 ECMKKFQE-GLEKLGAIEQDLATGTDAEGEKIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQH 428 (593)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhccCCcccccHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcc
Confidence 99999987 99999999999999954 222 3344444 4789999999999999998 479999999999999
Q ss_pred hCCChhHHHHHHHHHHhcCccccCCCCCCCCCcchhhhhhhhcccccCCCCccccccccchHHHHHHHHHHhcCCCCCCC
Q 010072 314 ARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDD 393 (519)
Q Consensus 314 ~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pl~~~lve~~~~~~l~~~~ 393 (519)
.|++.++..++.|+..+|..... +.+...| ..+.+++|. .+..|.+|||+|.++.|+|++++++|+++.
T Consensus 429 ~~i~~~~~~ii~~~~~~~~~~~~-----~~~~~k~-----~~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~ 497 (593)
T KOG1300|consen 429 AGISVEEMQIIQNLHILGVPVTK-----DSFLLKF-----DPPERKERV-EEQTYQLSRWVPVIKNILEKLIEDRLDKKH 497 (593)
T ss_pred cCCCchHHHHHhhHHHhCCcccc-----CcccccC-----CCCcccccc-ccceeeeeeeehHHHHHHHHHHhccCChhh
Confidence 99999999999999999987652 2222221 122245664 789999999999999999999999999999
Q ss_pred CCCcCCCCCCccccccccccCCCcccccccCCCCCcccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCCCHHHH
Q 010072 394 YPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSEL 473 (519)
Q Consensus 394 ~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTy~Ei 473 (519)
|||+++++....| ....+.|++.|.+.+... .....++++|||||||+||+|+
T Consensus 498 fp~~~~~s~~~~~-------------~~~~Sar~~~~~~~k~~~--------------~~~~~g~ri~VfIiGGvT~SEm 550 (593)
T KOG1300|consen 498 FPYLNDTSETSSG-------------SAATSARYGHPLSNKTPS--------------AFKKPGQRIIVFIIGGVTFSEM 550 (593)
T ss_pred CccccCCcccccc-------------CccccccccCcccccCcc--------------hhhccCceEEEEEeCCccHHHH
Confidence 9999876622111 112233444555433321 1234789999999999999999
Q ss_pred HHHHHHHhhcCCeEEEccccccChhHHHHHHhccC
Q 010072 474 RVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLT 508 (519)
Q Consensus 474 ~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~l~ 508 (519)
|++|+++++.+++|+||||+|++|.+||+.|+.+.
T Consensus 551 RvaYevs~~~~~EViiGS~~iltP~~fL~~lk~~~ 585 (593)
T KOG1300|consen 551 RVAYEVSEKLNREVIIGSDHILTPTKFLDDLKLLK 585 (593)
T ss_pred HHHHHHHHhhCceEEECCcccCCHHHHHHHHhhcc
Confidence 99999999999999999999999999999999443
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=1.7e-72 Score=616.30 Aligned_cols=440 Identities=29% Similarity=0.518 Sum_probs=323.7
Q ss_pred CceeeeeeecCCCeEEeCCCcchhhhcC-CCCCchhhhHHHHHHHHHHHHHHHHhCCCceEEEecCCCcccccccccccc
Q 010072 1 MQMNLEYFAIDSQGFVTDDERALEELFG-DEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDL 79 (519)
Q Consensus 1 ~E~~~df~~ld~~lfsl~~~~~~~~l~~-~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~ 79 (519)
.|+++||+|+|+|+|||++|.+|..+|. .++ .+.++.+|++|+++|.++|.+|.|||+|+.
T Consensus 101 ~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~-----~~~l~~~a~~L~~l~~~~g~~p~I~~~g~~------------- 162 (564)
T PF00995_consen 101 KEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGD-----ESSLQRIADSLLSLQLTLGEIPNIRYKGNS------------- 162 (564)
T ss_dssp EETT--SEEECTTEEEES-TCHHHHHHSTTGH-----HHHHHHHHHHHHHHHHHTT---EEEE-TTC-------------
T ss_pred ccceeEEEEccchhhhhcccchHHHHhccccc-----hhHHHHHHHHHHHHHHHhCCCCeEEEeCch-------------
Confidence 3799999999999999999999999998 554 678999999999999999999999999982
Q ss_pred hHHHHHHHHHHHHHHh----hhhcCCCC---CCCCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEeeccCCC
Q 010072 80 IPTKLAAGVWNCLMKY----KQSIENFP---QTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKT 152 (519)
Q Consensus 80 i~~~la~~l~~~l~~~----~~~~~~~~---~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~ 152 (519)
.|+++|+.+.+.+.+. ....+.++ ..++++|||+||++|++|||||||||||||||+|||++|.|+++.+...
T Consensus 163 ~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TYe~li~d~~~i~~~~v~~~~~~~~ 242 (564)
T PF00995_consen 163 NAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTYEGLIDDLFGINNNKVEIPDEINS 242 (564)
T ss_dssp HHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BHHHHHHHHSTEBTTEEEEEECSSS
T ss_pred hHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhcCceeeeEHHhhhhhcCCEeccccCCCc
Confidence 3666666666666552 22223332 2336899999999999999999999999999999999999999875333
Q ss_pred CCCCcceeEeCCCCChHHHHhhcCcHHHHHHHHHHHHHHHHHhhHHHhhhhcccCCCCCCHHHHHHHHHhCcchHHHHHH
Q 010072 153 GGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDK 232 (519)
Q Consensus 153 g~~~~~k~~~l~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~ 232 (519)
+ ..++.+.|+++|++|+++||+||++|++.|.+++++++.++ .. ..++..++++|++||++||+++++++.
T Consensus 243 ~--~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~~------~~~~~~~~~~~~~~v~~lp~~~~~~~~ 313 (564)
T PF00995_consen 243 G--ENKKKVVLNSNDPFFNEIRHLHFSEVGEKLNKKAKELKEEY-EK------SRSKSKSIQEMKEFVKKLPELQEQQKS 313 (564)
T ss_dssp S--ECEEEEE-STTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHC-H----------STTTHHCHHHHHCCHHHHHHHHHH
T ss_pred c--ccceeEecCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhh-cc------ccchhhHHHHHHHHHHHChHHHHHHHH
Confidence 2 12478999999999999999999999999999999998653 10 134578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCch----HHHHHhhhcCCCCChhhHHHHHHHHHHHcCCCCCch---
Q 010072 233 LSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGL----KDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGE--- 305 (519)
Q Consensus 233 l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~~~----~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~--- 305 (519)
+++|++|+++|++.+++++|.+++++||+|++|.+.. +.+.++|. +...+.+++|||+|||+++. |++..
T Consensus 314 l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~-~~~~~~~d~LRLl~L~sl~~--g~~~~~~~ 390 (564)
T PF00995_consen 314 LSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELIN-SRKISIEDKLRLLCLYSLTN--GIKGKDYD 390 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHH-STTSTHHHHHHHHHHHHHHH---HTCBHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhh-ccCCCHHHHHHHHHHHHHHh--cCCcchHH
Confidence 9999999999999999999999999999999997542 34888885 46899999999999999994 45443
Q ss_pred hHHHHHHHhCCChhHHHHHHHHHHhcCccccCCCCCCCCCcchhhhhhhhcc---c---ccCCCCccccccccchHHHHH
Q 010072 306 KGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAV---R---KDRTGEEQTWQLSRFYPMIEE 379 (519)
Q Consensus 306 ~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~---~---~~~~~~~~~y~~s~y~Pl~~~ 379 (519)
.+++.+.+.|++.+++.++.+|+++|+...+.+ + ..|.. .++.++++ . ....+.+.+|+|+||+|++++
T Consensus 391 ~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~~-~-~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~y~Pli~r 465 (564)
T PF00995_consen 391 QLKKLLLQAGYGIEALQLLNNLEKLGLLKSKDN-S-SNFQS---IRKKLNLISKFNDKNDKNNPKDISYVYSGYAPLIVR 465 (564)
T ss_dssp HHHHHHHHTT--HCHHHHHHHGGGGTHHCBSHT-T-S--CT---TC-TT---HHTTCCCSSSSCSCCCSTTCT---HHHH
T ss_pred HHHHHhhhcCCChHHHHHHHHHHHhcchhhccC-c-cchhh---hcccccccccccccccccccccccchhcccccHHHH
Confidence 445666666666699999999999999876420 0 01111 11222222 1 112367899999999999999
Q ss_pred HHHHHhcCCCC-CCCCCCcCCCCCCccccccccccCCCcccccccCCCCCcccCCCCCCCCCCccchhcccccccccCCc
Q 010072 380 LIEKLGKRELP-KDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQ 458 (519)
Q Consensus 380 lve~~~~~~l~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 458 (519)
+|+.+.+++|+ ++.||++........+. ..++++.+ +.|.+.. ....+.+
T Consensus 466 lve~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~-----------------~~~~~~~ 516 (564)
T PF00995_consen 466 LVEDLIKGKLDKEEEFPYLDPKPKNLNGS-----------SFSLRSSK-PSRSKTQ-----------------PSNKPRK 516 (564)
T ss_dssp HHHHHHTTHSHHTTTSEBSSTCC-----S-----------SSSSS-------------------------------S-SS
T ss_pred HHHHHhhccCCcccccccccccccccCCC-----------Cccccccc-ccccccc-----------------cccCCCC
Confidence 99999999997 88999987544111111 01222111 0111000 0113568
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhcC--CeEEEccccccChhHHHHHH
Q 010072 459 RIFVFIVGGATRSELRVCHKLTRKLN--REIILGSTSLDDPPQFITKM 504 (519)
Q Consensus 459 ~viVfvvGGvTy~Ei~al~~l~~~~~--~~iiigsT~I~~~~~fl~~l 504 (519)
+|||||||||||+|++++|+++++.+ ++|+||||+|+||++||++|
T Consensus 517 ~viVf~vGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 517 RVIVFFVGGVTYSEIRALRELSKKLGPGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp EEEEEEETEBEHHHHHHHHHHHTTSSSSSEEEEEESSBE-HHHHHHHH
T ss_pred EEEEEEEcCCcHHHHHHHHHHHHhhCCCcEEEEEeCCccCHHHHHHhC
Confidence 89999999999999999999999988 99999999999999999986
No 3
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-68 Score=527.02 Aligned_cols=415 Identities=25% Similarity=0.427 Sum_probs=335.1
Q ss_pred CceeeeeeecCCCeEEeCCCcchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCCCceEEEecCCCcccccccccccch
Q 010072 1 MQMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLI 80 (519)
Q Consensus 1 ~E~~~df~~ld~~lfsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i 80 (519)
.|+++||+++++++|||++|++|..... |....++++.+||++|+.+|+..|.|||++++ ..
T Consensus 123 qE~y~Df~~~n~~Lfsln~p~~~~~~~~------w~~~~l~R~~~GI~AllLsLK~~P~IRYq~~S------------~~ 184 (549)
T KOG1299|consen 123 QEIYLDFFKVNPDLFSLNIPHIFESSLN------WDPGALTRSTQGIIALLLSLKKKPVIRYQTSS------------RA 184 (549)
T ss_pred HHHHHhhhccCCceeecCCchhhccccc------cChhhhhHhHhhHHHHHHhccCCCeeEeecCC------------HH
Confidence 3899999999999999999998866422 33578999999999999999999999999885 46
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCC-CeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEeeccCCCCCCCcce
Q 010072 81 PTKLAAGVWNCLMKYKQSIENFPQTE-TCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKK 159 (519)
Q Consensus 81 ~~~la~~l~~~l~~~~~~~~~~~~~~-~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k 159 (519)
|+++|+.+...+.+ ..+..+|+.++ .|+|||+||+.||+||||+|||||||+||++||++|+|++.. .++.+++.+
T Consensus 185 ~~~lAe~vs~~i~~-E~~lFdfr~~~~~p~LLiLDR~~DpvTPLL~qWTYQaMvHEl~gi~nnrvdls~--~~~~~kd~~ 261 (549)
T KOG1299|consen 185 CKRLAEEVSYRITK-ESTLFDFRRTDSPPLLLILDRRDDPVTPLLNQWTYQAMVHELLGIKNNRVDLSK--VPSIPKDLE 261 (549)
T ss_pred HHHHHHHHHHHHhh-hhhhcccccCCCCCeEEEEecCCCCCchhhhHHHHHHHHHHHhccccCEEeecc--CCCCccccc
Confidence 89999999888866 44566776644 689999999999999999999999999999999999999875 234445567
Q ss_pred eEeCC-CCChHHHHhhcCcHHHHHHHHHHHHHHHHHhhHHHhhhhcccCCCCCCHHHHHHHHHhCcchHHHHHHHHHHHH
Q 010072 160 EVLLE-EHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVE 238 (519)
Q Consensus 160 ~~~l~-~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~ 238 (519)
+++|+ .+|+||+..++.+|+|++..|++.+.+|+.+.+ . ..+..++.||+.|+..+|+|+++...+++|+.
T Consensus 262 evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv~~fq~k~~---~-----~~~iesi~Dmk~Fve~YPefkkmSG~VsKHv~ 333 (549)
T KOG1299|consen 262 EVVLSSEQDPFFKNNMYANFGEIGSNIKQLVSEFQFKTK---T-----NSNIESIADMKNFVEDYPEFKKMSGNVSKHVA 333 (549)
T ss_pred eeeeccccchHHHhhhhhhHHHHHHHHHHHHHHHHHhhh---h-----chhhhhHHHHHHHHHhcHHHhhhhhhHHHHHH
Confidence 78886 899999999999999999999999999987432 1 22467999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhcCCCc---hHHHHHhhhcCCCCChhhHHHHHHHHHHHcCCCCCchhHHHHHHH--
Q 010072 239 IAGKINKIIRELRLRELGQLEQDLVFGDAG---LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKL-- 313 (519)
Q Consensus 239 i~~~i~~~~~~~~l~~~~~lEq~i~~g~~~---~~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~llq~-- 313 (519)
+..++++.++.++|.+++|+||+++|..+. ..++.++|. +.+++..|++||+|||+|+|+ ..++.+..++.+.
T Consensus 334 lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~~~~~i~~LL~-n~~vs~~d~lrLv~lYaLr~e-~~~~~~~~~L~~~l~ 411 (549)
T KOG1299|consen 334 LVGELSKLVQRRNLLEVSEVEQNLACNGDHGADFNDIKKLLQ-NEKVSEIDRLRLVALYALRYE-RHPPNELRQLPQILR 411 (549)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcCcchhhHHHHHHHHc-CCcccHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHH
Confidence 999999999999999999999999996654 356677777 578999999999999999994 6667676665543
Q ss_pred -hCCChhHHHHHHHHHHhcCccccCCCCCCCCCcc--hhhhhhhhcccccCCCCccccccccchHHHHHHHHHHhcCCCC
Q 010072 314 -ARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLK--FDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELP 390 (519)
Q Consensus 314 -~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~--f~~~k~~~~~~~~~~~~~~~y~~s~y~Pl~~~lve~~~~~~l~ 390 (519)
-|. ..-.++.-|.++++...+.. .-|+.. +.+ .++. .+..++.++.| .+|.|+++++++.+.+|+|+
T Consensus 412 ~~~~--~~~~~v~~ll~~~G~~~R~~---dlf~~~~~v~i--~R~~-~kglkgvENVy--tQH~P~lk~~l~~~~rgRl~ 481 (549)
T KOG1299|consen 412 EQGP--KKPELVPFLLKYAGLHVRQG---DLFGPNDLVPI--ARRF-IKGLKGVENVY--TQHQPLLKSTLEDLFRGRLK 481 (549)
T ss_pred hcCC--CcchhHHHHHHhcCcccccc---cccCcchhHHH--HHHH-hhccCcchhhh--hccCHHHHHHHHHHHhcccc
Confidence 344 23345555666666554221 112221 111 1111 12223455545 69999999999999999999
Q ss_pred CCCCCCcCCCCCCccccccccccCCCcccccccCCCCCcccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCCCH
Q 010072 391 KDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATR 470 (519)
Q Consensus 391 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTy 470 (519)
+-.||+++... ...+++.||||||||+||
T Consensus 482 ~~~~p~l~~~~---------------------------------------------------s~~~pq~IIVfivGGaTY 510 (549)
T KOG1299|consen 482 EIDYPFLGSQT---------------------------------------------------SRDRPQDIIVFIVGGATY 510 (549)
T ss_pred cCCCccccccc---------------------------------------------------ccCCCceEEEEEECCccH
Confidence 98999986311 012578999999999999
Q ss_pred HHHHHHHHHHhh-cCCeEEEccccccChhHHHHHHhcc
Q 010072 471 SELRVCHKLTRK-LNREIILGSTSLDDPPQFITKMKML 507 (519)
Q Consensus 471 ~Ei~al~~l~~~-~~~~iiigsT~I~~~~~fl~~l~~l 507 (519)
+|.+.+++++.+ .|++|++|||+|+|...|++++...
T Consensus 511 EEa~~V~~~N~tn~g~rvvLgGttvlntk~f~~di~~a 548 (549)
T KOG1299|consen 511 EEARVVHELNATNPGVRVVLGGTTVLNTKSFIDEIMAA 548 (549)
T ss_pred HHHHHHHHHhcCCCceEEEEcceEEechHHHHHHHhcc
Confidence 999999999764 5899999999999999999998753
No 4
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-68 Score=547.70 Aligned_cols=436 Identities=19% Similarity=0.315 Sum_probs=340.7
Q ss_pred ceeeeeeecCCCeEEeCCCcchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCCCceEEEecCCCcccccccccccchH
Q 010072 2 QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIP 81 (519)
Q Consensus 2 E~~~df~~ld~~lfsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~ 81 (519)
|++++++|+|.|++||+.|++|..+|.++| ++.+..+|+++.+++.++|.+|.|+..|+
T Consensus 140 e~~~~~lpld~DllSlEl~~~~~d~~~~gd-----~s~l~~va~~l~~LQ~~~G~ip~v~g~G~---------------- 198 (600)
T KOG1302|consen 140 EQILDLLPLDGDLLSLELPNSFLDLYLDGD-----QSSLYHVADALVSLQRLYGIIPKVYGKGE---------------- 198 (600)
T ss_pred hhhhhhccccccchhccchHHHHHHhhccc-----cchhHHHHHHHHHHHHhhCCCcceeeccH----------------
Confidence 789999999999999999999999999888 57899999999999999999999999887
Q ss_pred HHHHHHHHHHHHHhhhhcC--CCCC-CCCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEeeccCCC----C-
Q 010072 82 TKLAAGVWNCLMKYKQSIE--NFPQ-TETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKT----G- 153 (519)
Q Consensus 82 ~~la~~l~~~l~~~~~~~~--~~~~-~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~----g- 153 (519)
.|+++.+++.+..++.. ..+. .+.+.||++||++|++||||||.||+|+|||+|||.+|.|+++.+..+ |
T Consensus 199 --~ak~~~~l~~~l~~e~~t~n~~~~~~~~~liLlDR~~D~vtpLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~ 276 (600)
T KOG1302|consen 199 --CAKRVWELLKKLEREEATENNGDRPEIDHLILLDRDVDPVTPLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGD 276 (600)
T ss_pred --HHHHHHHHHHHHhhccccccCCCccccceEEEEeccCcccchhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCC
Confidence 45666666665544321 1122 457789999999999999999999999999999999999988764211 1
Q ss_pred ---CCCcceeEeCCCCChHHHHhhcCcHHHHHHHHHHHHHHHHHhhHHHhhhhcccCCCCCCHHHHHHHHHhCcchHHHH
Q 010072 154 ---GPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQI 230 (519)
Q Consensus 154 ---~~~~~k~~~l~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~ 230 (519)
+..+.+.+.++..|++|+++|++||+.|++.+++++++++...+. +.+.++++||++||++||.+++++
T Consensus 277 ~~~~~~~~~~~l~~~~deIy~eiR~k~f~~v~~~lsk~ak~l~~~~~~--------r~~~~sV~Eik~FV~~Lp~L~~~~ 348 (600)
T KOG1302|consen 277 LGKGKTEKKIVLLYSSDEIYAEIRNKHFNAVGPLLSKKAKELQAQYET--------RRQAMSVAEIKDFVSKLPKLQQRK 348 (600)
T ss_pred CccCccccceeccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhccCcHHHHHHHHHHHHHHHHHH
Confidence 223456777889999999999999999999999999999875432 346889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCchHHHHHhhhc--CCCCChhhHHHHHHHHHHHcCCCCCchhH-
Q 010072 231 DKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTT--NEDVSRENKLRLLMILAAIYPEKFQGEKG- 307 (519)
Q Consensus 231 ~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~~~~~~~~~i~~--~~~~~~~dklRLl~L~~l~~~~g~~~~~~- 307 (519)
+.++.|+++|+.+++.++...|.+.+.+||+++.|.+..+. .++|++ ....+...+|||+||.|++. +|++++++
T Consensus 349 ~~l~~H~~lae~i~~~v~~~~f~~~l~lE~ell~~~d~~k~-~~~IeElI~~~~~~~~vLRLicL~Slt~-~Gl~~k~l~ 426 (600)
T KOG1302|consen 349 KSLERHTNLAEMIMQHVKNEDFRKLLKLEHELLEGNDSDKD-FDYIEELIYQEVPLNNVLRLICLLSLTC-NGLKPKDLD 426 (600)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCcccc-hHHHHHHHhhcccHHHHHHHHHHHHHHh-cCCCHHHHH
Confidence 99999999999999999999999999999999999865333 444433 35789999999999999987 69998765
Q ss_pred ---HHHHHHhCCChhHHHHHHHHHHhcCccccCCCCCC-CCC--cchhh-hhhhhccccc---CCCCccccccccchHHH
Q 010072 308 ---QNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTG-AFS--LKFDI-NKKKRAVRKD---RTGEEQTWQLSRFYPMI 377 (519)
Q Consensus 308 ---~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~-~~~--~~f~~-~k~~~~~~~~---~~~~~~~y~~s~y~Pl~ 377 (519)
+.++|.||+ +++.++.||+++|++..+...+.. -.+ ..|+. .++.+++..+ .+|.|++|+||||+|++
T Consensus 427 ~~rr~~lqsYG~--ehl~tl~nL~kaGLl~~q~~~~~~~~~~~~~~~st~~ntl~l~~~~~d~~~p~DiaYvySgy~PLs 504 (600)
T KOG1302|consen 427 HYRREYLQSYGY--EHLLTLQNLEKAGLLREQTGGRKLHTKSSKRNYSTWANTLPLVDEENDESNPSDIAYVYSGYAPLS 504 (600)
T ss_pred HHHHHHHHhhhH--HHHHHHHHHHHcCCcccccCCCcchhhHHHHHHHHHHhcCCCcCCcccccCcccchhhhcccccHH
Confidence 467899999 999999999999999874321100 000 12222 2344554432 35899999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcCCCCCCccccccccccCCCcccccccCCCCCcccCCCCCCCCCCccchhcccccccccCC
Q 010072 378 EELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMG 457 (519)
Q Consensus 378 ~~lve~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 457 (519)
+||+|.+++...-...|--+...+ |..... .+|... +..+ ++. -++..
T Consensus 505 ~rlve~~l~~~~w~~~~~~i~~l~----g~~~e~----------------~~~~~~-----~~~~----~~~---~~g~~ 552 (600)
T KOG1302|consen 505 CRLVEDLLKRRGWQELYSKIRNLP----GPHFEE----------------VTWTPS-----DIAS----KNN---SPGAL 552 (600)
T ss_pred HHHHHHHhcccchhhhHHHHccCC----CCchhh----------------cccChh-----hhcc----ccc---CCCCc
Confidence 999999998843333332222111 100000 011100 0000 000 01236
Q ss_pred ceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHH
Q 010072 458 QRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKM 504 (519)
Q Consensus 458 ~~viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l 504 (519)
+.++|||+|||||+||||+|+|++..|++|+|+||+++|+.++|+.+
T Consensus 553 R~~lVff~GG~T~~EIAalr~l~~~~~~~f~i~Tt~ling~~ll~~~ 599 (600)
T KOG1302|consen 553 RVTLVFFLGGCTYAEIAALRFLAKLEGYRFLIATTGLINGSSLLEAI 599 (600)
T ss_pred ceEEEEEECCccHHHHHHHHHHHhhcCceEEEEeccccchHHHHHhh
Confidence 78899999999999999999999999999999999999999999976
No 5
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-64 Score=528.78 Aligned_cols=439 Identities=24% Similarity=0.382 Sum_probs=330.4
Q ss_pred CceeeeeeecCCCeEEeCCCcchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCCCceEEEecCCCcccccccccccch
Q 010072 1 MQMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLI 80 (519)
Q Consensus 1 ~E~~~df~~ld~~lfsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i 80 (519)
+|+++||+++|+++|++++|..|...+.+.. ...+..||++|+|+|.++|.+|.|||.++. .
T Consensus 127 ~e~~ldf~~le~dlfsl~~p~~~~~~~~~~~-----~~~~~~~v~gl~S~~~slg~~P~Ir~~~~~-------------~ 188 (582)
T COG5158 127 YEIYLDFFVLESDLFSLNLPESFLESSLPST-----TEALIKIVNGLFSLCVSLGRIPIIRYSGGK-------------N 188 (582)
T ss_pred eeeecceEEechHhHhhcCchhhhhhcCCCc-----hHHHHHHHhhHHHHHhhcCCcceEEecCCc-------------h
Confidence 4789999999999999999999988887543 234558999999999999999999997763 3
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCC---CCCCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEeeccCCCCCCCc
Q 010072 81 PTKLAAGVWNCLMKYKQSIENFP---QTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPE 157 (519)
Q Consensus 81 ~~~la~~l~~~l~~~~~~~~~~~---~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~ 157 (519)
|.++|+++...+......+.++. .+.+|.|||+||+.|++|||+|+||||||+||+++|++|.|+++.....| .+
T Consensus 189 a~~~ak~l~~~~~~~~~~~~~~~~~~~~~~~~LIIlDRs~D~iTPlLh~wTYqaml~Dl~~~~~~~v~~~~~~~~g--~~ 266 (582)
T COG5158 189 AEHMAKKLSDEIRNELSINFDGVVSKNPLRPILIILDRSLDPITPLLHQWTYQAMLHDLLGINNNIVTIPSSSVNG--PE 266 (582)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCcccchHHHHHHHHHHHHHHHhhcCeEEeccccccc--cc
Confidence 55556655554442222222221 12489999999999999999999999999999999999999997644434 45
Q ss_pred ceeEeCCCCChHHHHhhcCcHHHHHHHHHHHHHHHHHhhHHHhhhhcccCCCCCCHHHHHHHHHhCcchHHHHHHHHHHH
Q 010072 158 KKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHV 237 (519)
Q Consensus 158 ~k~~~l~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~ 237 (519)
++...++.+|+||.++||+||++|++.|.+.+++|+.+++. .+ .....++.+|++||.+||+++++++.|.+|+
T Consensus 267 kk~~~~~~~D~~w~~~k~~~f~~v~e~l~~~~~~l~~~~~~--~~----~~~~~s~~dik~~v~~lpel~~~~~~l~~H~ 340 (582)
T COG5158 267 KKFSLSDKDDPFWNDNKFLNFGEVGEKLKKLAKELKTKAQL--RH----KENAKSVNDIKEFVDKLPELQKRSRSLNKHL 340 (582)
T ss_pred ceeccCCcccHhHHHhccCchhhHHHHHHHHHHHHHHHHhh--hh----hhhcccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66667789999999999999999999999999999876542 22 1235799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcCCCchH---HHHHhhhcCCCCChhhHHHHHHHHHHHcCCCC-CchhHHHHHHH
Q 010072 238 EIAGKINKIIRELRLRELGQLEQDLVFGDAGLK---DVVKFFTTNEDVSRENKLRLLMILAAIYPEKF-QGEKGQNIMKL 313 (519)
Q Consensus 238 ~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~~~~---~~~~~i~~~~~~~~~dklRLl~L~~l~~~~g~-~~~~~~~llq~ 313 (519)
+||++|++++++++|++++++||++.++.+... +++.+++. .....+||||+|||+|+. +|+ .+.+..+++..
T Consensus 341 ~l~~e~l~~~~~~~l~~f~eIEq~l~~~~~~~~~i~Dli~~l~~--~~~E~~klRllilysL~~-~~~~~~~~~~~~l~~ 417 (582)
T COG5158 341 TLASELLKVVEERYLDDFSEIEQNLSTGNDVKSDISDLIELLES--GVEEDDKLRLLILYSLTK-DGLIKDIDELRLLRI 417 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHhc--CchHHHHHHHHHHHHHhc-CcchhHHHHHHHHHh
Confidence 999999999999999999999999998875433 44555542 223335999999999998 453 33344556666
Q ss_pred hCCChhHHHHHHHHHHhcCccccCCCC----CCC---CCcchhhhhhhhcccccCCCCccccccccchHHHHHHHHHHhc
Q 010072 314 ARLQSDDITAVNNMRLLGGASDIKKSS----TGA---FSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGK 386 (519)
Q Consensus 314 ~g~~~~~~~~l~~L~~lg~~~~~~~~~----~~~---~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pl~~~lve~~~~ 386 (519)
-|++.+++..+.+|..+|....+.... .+. +..|+. ........+...+..+++++|.|..+++...+..
T Consensus 418 ~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~~~g~~d~l~~~~n---~y~~s~~~~~~~~~~~v~~~~iP~~k~~~~~~~~ 494 (582)
T COG5158 418 QGYGIEALNFFQRLKELGFLTLKDSKTISLKRGDKDSLFQWFN---TYSLSREHQGVPDLENVYSGLIPLKKDIPIDLLV 494 (582)
T ss_pred cCCCHHHHHHHHHHHHHhhhhhhcccccccccCCcccccCccc---ccccccccCCCchHHHHHHhhcchhcccchhhhh
Confidence 677779999999999988774322110 011 111111 0111001123566788899999999999999998
Q ss_pred CCCCCCCCCCcCCCCCCccccccccccCCCcccccccCCCCCcccCCCCCCCCCCccchhcccccccccCCceEEEEEEc
Q 010072 387 RELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVG 466 (519)
Q Consensus 387 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvG 466 (519)
+.+.+..+..+.. +.+..+ +.| +.+.. ...++++++|||+|
T Consensus 495 ~~~~~~~~s~~~~---------------------s~~~~~-~k~-~~~~~----------------~~~~~~~~~VfviG 535 (582)
T COG5158 495 RRLFEPLKSSQQQ---------------------SLRLSR-PKG-RSRSN----------------KKIPQQRILVFVIG 535 (582)
T ss_pred hhhcccccchhcc---------------------ceeecc-ccc-ccccc----------------cccccceEEEEEEC
Confidence 8765544433220 111111 112 11110 01357899999999
Q ss_pred CCCHHHHHHHHHHHhhcC-CeEEEccccccChhHHHHHHhccCCC
Q 010072 467 GATRSELRVCHKLTRKLN-REIILGSTSLDDPPQFITKMKMLTVD 510 (519)
Q Consensus 467 GvTy~Ei~al~~l~~~~~-~~iiigsT~I~~~~~fl~~l~~l~~~ 510 (519)
|+||.|++++++++.+.+ ++|++|||.|+||.+||+++..++..
T Consensus 536 G~ty~E~~~~~e~~~~~~~~~ii~Gst~iltp~e~l~~v~~~~~~ 580 (582)
T COG5158 536 GVTYEELRVLYELNESQNSVRIIYGSTEILTPAEFLDEVKRLGGS 580 (582)
T ss_pred CeehHHHHHHHHHHhhcCCeeEEEcCCceecHHHHHHHHHHhccc
Confidence 999999999999999988 99999999999999999999988654
No 6
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-59 Score=472.50 Aligned_cols=441 Identities=21% Similarity=0.350 Sum_probs=333.7
Q ss_pred ceeeeeeecCCCeEEeCCCcchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCCCceEEEecCCCcccccccccccchH
Q 010072 2 QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIP 81 (519)
Q Consensus 2 E~~~df~~ld~~lfsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~ 81 (519)
+-++||+.+|+|+|+|.++++|..+..++......+..+++||++||++|.++|.+|+||| +++.+| ++||
T Consensus 146 DQYlnFI~LEddlFsL~~~~~~~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRc--p~g~aA-------EmvA 216 (621)
T KOG1301|consen 146 DQYLNFIVLEDDLFSLGMQNSFHAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRC--PKGGAA-------EMVA 216 (621)
T ss_pred HhHhhheeecchhhhhcccccchhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEEC--CCCCHH-------HHHH
Confidence 4579999999999999999999888777666667788999999999999999999999998 333333 7899
Q ss_pred HHHHHHHHHHHHHhhhhcC----CCCCCCCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEeeccCCCCCCCc
Q 010072 82 TKLAAGVWNCLMKYKQSIE----NFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPE 157 (519)
Q Consensus 82 ~~la~~l~~~l~~~~~~~~----~~~~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~ 157 (519)
++|-+++++.+-..+.... .+...+||+|+|+||++|++||+.|.||||||+||+|+.+.|+|+++.+.. ...
T Consensus 217 ~kL~qKLRd~l~d~k~~lft~~~~~~~~~RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~~---~~~ 293 (621)
T KOG1301|consen 217 RKLDQKLRDNLRDTKNNLFTMDGGGAGFQRPVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESESK---RKK 293 (621)
T ss_pred HHHHHHHHHHhHhhcccceeccCcccCCCCceEEEEecccccccccccceehHHHHHHHHhcccceEEeecccc---CCC
Confidence 9999999988875544321 111246999999999999999999999999999999999999999987431 345
Q ss_pred ceeEeCCCCChHHHHhhcCcHHHHHHHHHHHHHHHHHhhHHHhhhh--c---cc---CCCCCCHHHHHHHHHhCcchHHH
Q 010072 158 KKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQH--S---AR---DGGELSTKDLQKMVQALPQYSDQ 229 (519)
Q Consensus 158 ~k~~~l~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~--~---~~---~~~~~~~~~~~~~v~~lp~~~~~ 229 (519)
+|.++|+.+|+||.++.+.+|++|++.|.+++.+|+.+ ++++++ + .. .+...+...++++|++||++.++
T Consensus 294 ~k~yDld~~D~fW~~n~~~pFP~VAE~Ve~eL~~Yk~~--~~ei~r~~G~sg~~e~~~~~~~Dtt~l~~aV~sLPEL~ek 371 (621)
T KOG1301|consen 294 KKSYDLDPNDKFWRRNKGSPFPEVAENVEEELESYKNE--EAEIKRKMGLSGEDEGAIDELNDTTKLQSAVSSLPELTEK 371 (621)
T ss_pred CccccCCCccHHHHhcCCCCCchHHHHHHHHHHHHHhh--HHHHHhhcCCCcccccccccccchHHHHHHHHHhHHHHHh
Confidence 78899999999999999999999999999999999865 345653 1 11 11134555999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCchHHHHHhhhcCCCCChhhHHHHHHHHHHHcCCCCCchhH--
Q 010072 230 IDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKG-- 307 (519)
Q Consensus 230 ~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~~~~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~-- 307 (519)
++.+++|++||.++++.+++|+|+.++++|+++.++.-. ..+++.+.+...++.+||||++++|.++.. -.+..+.
T Consensus 372 K~~ID~HtnIatalL~~IkeR~lD~ff~~E~~~~~~~l~-~~~l~~~~~~~~gt~EDkLR~~Ii~~ls~e-t~~~s~le~ 449 (621)
T KOG1301|consen 372 KRLIDLHTNIATALLEQIKERKLDDFFEVEKKIMSTTLD-RSLLDILEDGEAGTPEDKLRLFIIYYLSTE-TVPQSDLEA 449 (621)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHHHHHhccccccccc-HHHHHHHhcccCCChHHHHHHHHHHHHhhc-cccHHHHHH
Confidence 999999999999999999999999999999999873323 667788876567999999999999999974 4445444
Q ss_pred -HHHHHHhCCChhHHHHHHHHHHhcCccccCCCCCC---CCCcchh----------hhhhhhcccccCCCCccccccccc
Q 010072 308 -QNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTG---AFSLKFD----------INKKKRAVRKDRTGEEQTWQLSRF 373 (519)
Q Consensus 308 -~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~---~~~~~f~----------~~k~~~~~~~~~~~~~~~y~~s~y 373 (519)
+..++..|+..+.+.++.+++.+.-......+..+ ++-.+|. +-.-++++.+ +. -
T Consensus 450 ~e~al~e~~~d~~Al~yvkr~k~~~~~~s~~~~~~~~~t~~~~~~~kl~~qg~~~vm~GVKNLlp~-----~q------~ 518 (621)
T KOG1301|consen 450 VENALTEAGCDLNALKYVKRLKEITKMSSATSAYSGTTTKIVDLFEKLYSQGSSFVMEGVKNLLPK-----KQ------N 518 (621)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhcccccccccCCcccHHHHHHHHhhccHHHHHhhHHhcCcc-----cc------c
Confidence 45677889987888888777654322221111101 1111111 0011122211 11 1
Q ss_pred hHHHHHHHHHHhcCCC--CCCCCCCcCCCCCCccccccccccCCCcccccccCCCCCcccCCCCCCCCCCccchhccccc
Q 010072 374 YPMIEELIEKLGKREL--PKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASS 451 (519)
Q Consensus 374 ~Pl~~~lve~~~~~~l--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 451 (519)
.| ++++++.+..++- ..++|.|++.... +|++ ..+..
T Consensus 519 lP-vT~iveal~~~~sn~etddYl~~DPk~~--k~~~-----------~~~~~--------------------------- 557 (621)
T KOG1301|consen 519 LP-VTRIVEALMDPKSNPETDDYLYFDPKLS--KGGS-----------SSLPI--------------------------- 557 (621)
T ss_pred Cc-HHHHHHHhhCCCCCccccceEeeccccc--cCCC-----------ccccc---------------------------
Confidence 22 7788888876542 3355777763221 1100 01100
Q ss_pred ccccCCceEEEEEEcCCCHHHHHHHHHHHhhc--CCeEEEccccccChhHHHHHHhccCCCC
Q 010072 452 DFKKMGQRIFVFIVGGATRSELRVCHKLTRKL--NREIILGSTSLDDPPQFITKMKMLTVDE 511 (519)
Q Consensus 452 ~~~~~~~~viVfvvGGvTy~Ei~al~~l~~~~--~~~iiigsT~I~~~~~fl~~l~~l~~~~ 511 (519)
.+.+.++.|||||||++|-|+..|.+|+++. .++||+|+|.|+||.+|+++++.|+.+-
T Consensus 558 -~r~~f~eaIVFvVGGGNYiEYqnL~d~~krq~~~krIiYGsTeIln~~eFl~qls~Lg~~~ 618 (621)
T KOG1301|consen 558 -KRQPFQEAIVFVVGGGNYIEYQNLVDLAKRQQTVKRIIYGSTEILNAREFLEQLSRLGLKM 618 (621)
T ss_pred -cccchhheEEEEEcCcCeeehhhHHHHHHhhcccceeEecchhcCCHHHHHHHHHHhcccc
Confidence 1135788999999999999999999998864 4899999999999999999999998764
No 7
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=57.50 E-value=14 Score=35.07 Aligned_cols=44 Identities=14% Similarity=0.452 Sum_probs=33.9
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhcc
Q 010072 460 IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKML 507 (519)
Q Consensus 460 viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~l 507 (519)
+.|.+.||+|-..++.+.. .|.++++.++.|++.++....++++
T Consensus 171 ~~i~v~GGI~~~nv~~l~~----~GaD~vvvgSai~~~~d~~~~~~~~ 214 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE----AGADVFVAGSAVFGAPDYKEAIDSL 214 (220)
T ss_pred ceEEEECCCCHHHHHHHHH----cCCCEEEEChhhhCCCCHHHHHHHH
Confidence 5677889999977766655 5899999999999877765555443
No 8
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=53.24 E-value=17 Score=34.89 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=33.5
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhcc
Q 010072 459 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKML 507 (519)
Q Consensus 459 ~viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~l 507 (519)
.+.|.+.||+|-..++.+.+ .|.++++.++.|...+++-+.++.+
T Consensus 167 ~~~I~vdGGI~~eni~~l~~----aGAd~vVvGSaIf~~~d~~~~i~~l 211 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAE----AGADMFVAGSAIFGQPDYKAVIDEM 211 (220)
T ss_pred CeeEEEECCCCHHHHHHHHH----cCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 47788899999776666554 4899999999999766655554443
No 9
>PF14071 YlbD_coat: Putative coat protein
Probab=51.44 E-value=16 Score=31.48 Aligned_cols=14 Identities=43% Similarity=0.895 Sum_probs=12.6
Q ss_pred EeCCCCChHHHHhh
Q 010072 161 VLLEEHDPLWLELR 174 (519)
Q Consensus 161 ~~l~~~D~~~~~~r 174 (519)
++|.++|++|..+|
T Consensus 32 ~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 32 YLLGEDDPIWDPYK 45 (124)
T ss_pred HHhCCCcchHHHhh
Confidence 56789999999999
No 10
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=50.40 E-value=18 Score=33.15 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=33.5
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhcc
Q 010072 459 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKML 507 (519)
Q Consensus 459 ~viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~l 507 (519)
.+-|++.||++-..+..+.. .|.+.+..++.+...++....+..+
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~----~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLA----AGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCCEEEECCCCHHHHHHHHH----cCCCEEEEehHhhcCCCHHHHHHHH
Confidence 35689999999766665554 4899999999998766666665544
No 11
>PLN02334 ribulose-phosphate 3-epimerase
Probab=49.78 E-value=17 Score=34.96 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=33.7
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhcc
Q 010072 460 IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKML 507 (519)
Q Consensus 460 viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~l 507 (519)
+-|++.||+|-.-++.+... |.++++.++.|+..++.-+.++.+
T Consensus 175 ~~I~a~GGI~~e~i~~l~~a----Gad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAEA----GANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred CcEEEeCCCCHHHHHHHHHc----CCCEEEEChHHhCCCCHHHHHHHH
Confidence 46999999998877776654 888999999999776665555443
No 12
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=42.71 E-value=25 Score=32.94 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=31.5
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhc
Q 010072 460 IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKM 506 (519)
Q Consensus 460 viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~ 506 (519)
+-|++.||+|-..++.+.. .|.+.+++++.|.+..+..+.+..
T Consensus 161 ~~v~a~GGI~~~~i~~~~~----~Ga~gv~~gs~i~~~~d~~~~~~~ 203 (212)
T PRK00043 161 IPIVAIGGITPENAPEVLE----AGADGVAVVSAITGAEDPEAAARA 203 (212)
T ss_pred CCEEEECCcCHHHHHHHHH----cCCCEEEEeHHhhcCCCHHHHHHH
Confidence 6799999999766665544 489999999999876555444433
No 13
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=39.18 E-value=39 Score=31.62 Aligned_cols=44 Identities=14% Similarity=0.365 Sum_probs=32.5
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhcc
Q 010072 460 IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKML 507 (519)
Q Consensus 460 viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~l 507 (519)
+-|++.||+|-.-+ .++. +.|.+.++.++.|+++.+.-..++.+
T Consensus 166 ~~i~v~GGI~~env---~~l~-~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 166 ILIEVDGGVNDDNA---RELA-EAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred ceEEEECCcCHHHH---HHHH-HcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 56889999996444 4433 45899999999999888776666543
No 14
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=36.81 E-value=37 Score=32.74 Aligned_cols=44 Identities=9% Similarity=0.235 Sum_probs=33.4
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhc
Q 010072 459 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKM 506 (519)
Q Consensus 459 ~viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~ 506 (519)
.+.|-|-||+|-..+..+.. .|.+++|.|+.|...++..+.+..
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~----aGad~iVvGsaI~~a~d~~~~~~~ 216 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAAD----AGANVIVAGSSIFKAKDRKQAIEL 216 (228)
T ss_pred cCeEEECCCCCHHHHHHHHH----cCCCEEEEchHHhCCCCHHHHHHH
Confidence 46789999999987776655 389999999999876665554443
No 15
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=36.58 E-value=42 Score=31.13 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=31.5
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHh
Q 010072 460 IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMK 505 (519)
Q Consensus 460 viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~ 505 (519)
+-|+..||+|-..++.+. ..|.+.+..++.|.+.++-...++
T Consensus 153 ~pv~a~GGI~~~~~~~~~----~~G~~gva~~~~i~~~~dp~~~~~ 194 (196)
T TIGR00693 153 IPIVAIGGITLENAAEVL----AAGADGVAVVSAIMQAADPKAAAK 194 (196)
T ss_pred CCEEEECCcCHHHHHHHH----HcCCCEEEEhHHhhCCCCHHHHHH
Confidence 459999999976666544 349999999999998766555444
No 16
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=34.30 E-value=56 Score=31.42 Aligned_cols=45 Identities=11% Similarity=0.255 Sum_probs=34.0
Q ss_pred ceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhc
Q 010072 458 QRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKM 506 (519)
Q Consensus 458 ~~viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~ 506 (519)
..+.|-|=|||+-.-++.+.+. |.+++|+|+.|.+.++.-+.++.
T Consensus 170 ~~~~IeVDGGI~~eti~~l~~a----GaDi~V~GSaiF~~~d~~~~~~~ 214 (223)
T PRK08745 170 KPIRLEIDGGVKADNIGAIAAA----GADTFVAGSAIFNAPDYAQVIAQ 214 (223)
T ss_pred CCeeEEEECCCCHHHHHHHHHc----CCCEEEEChhhhCCCCHHHHHHH
Confidence 3588999999998877766553 89999999999966555444443
No 17
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=33.75 E-value=46 Score=31.17 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=30.2
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHh
Q 010072 459 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMK 505 (519)
Q Consensus 459 ~viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~ 505 (519)
.+.|.+.||+|..-+..+. +.|.+.++.++.|.+.++.-+.++
T Consensus 158 ~~~i~v~GGI~~~n~~~~~----~~Ga~~v~vGsai~~~~d~~~~~~ 200 (206)
T TIGR03128 158 EARVAVAGGINLDTIPDVI----KLGPDIVIVGGAITKAADPAEAAR 200 (206)
T ss_pred CCcEEEECCcCHHHHHHHH----HcCCCEEEEeehhcCCCCHHHHHH
Confidence 3456778999988776543 358998888888997655444433
No 18
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=33.49 E-value=77 Score=25.93 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=26.0
Q ss_pred CceEEEEEEcC--CCHHHHHHHHHH-Hhhc--CCeEEEccc
Q 010072 457 GQRIFVFIVGG--ATRSELRVCHKL-TRKL--NREIILGST 492 (519)
Q Consensus 457 ~~~viVfvvGG--vTy~Ei~al~~l-~~~~--~~~iiigsT 492 (519)
-+.++|-|.|| +|+.|+..+-+. .+.. ..+|++|.+
T Consensus 36 A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 36 AKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp -SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred hceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 47899999997 789999877654 4543 588998865
No 19
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=31.87 E-value=63 Score=30.13 Aligned_cols=44 Identities=11% Similarity=0.318 Sum_probs=32.4
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhcc
Q 010072 460 IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKML 507 (519)
Q Consensus 460 viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~l 507 (519)
+-|++.||+|-.-++.+. +.|.+.++.++.|++..+....++.+
T Consensus 167 ~pi~v~GGI~~env~~~~----~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 167 LLIEVDGGINLETIPLLA----EAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred eEEEEECCCCHHHHHHHH----HcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 568899999975544443 24889999999999888776665543
No 20
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=30.49 E-value=55 Score=34.33 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=29.6
Q ss_pred ceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHH
Q 010072 458 QRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFI 501 (519)
Q Consensus 458 ~~viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl 501 (519)
..+.|.+.||++..-+..+. +.|.+++|.|+.|...++.-
T Consensus 329 ~~~~I~VdGGI~~eti~~l~----~aGADivVVGsaIf~a~Dp~ 368 (391)
T PRK13307 329 GKILVAVAGGVRVENVEEAL----KAGADILVVGRAITKSKDVR 368 (391)
T ss_pred CCCcEEEECCcCHHHHHHHH----HcCCCEEEEeHHHhCCCCHH
Confidence 45789999999966654443 35899999999998654443
No 21
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=29.88 E-value=70 Score=29.70 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=31.7
Q ss_pred ceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHh
Q 010072 458 QRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMK 505 (519)
Q Consensus 458 ~~viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~ 505 (519)
..+.|.+.||++-.- +.++. +.|.+.++.|+.|...++.-+.++
T Consensus 157 ~~~~i~~~GGI~~~~---i~~~~-~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 157 LGVKVAVAGGITPDT---LPEFK-KAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred cCCCEEEECCcCHHH---HHHHH-hcCCCEEEEeehhcCCCCHHHHHh
Confidence 457899999999543 33333 348999999999987777655554
No 22
>PRK10039 hypothetical protein; Provisional
Probab=26.93 E-value=1.3e+02 Score=26.22 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=28.8
Q ss_pred cCCCHHHHHHHHHHHhhcC----Ce-EEEccccccChhHHHHHHh
Q 010072 466 GGATRSELRVCHKLTRKLN----RE-IILGSTSLDDPPQFITKMK 505 (519)
Q Consensus 466 GGvTy~Ei~al~~l~~~~~----~~-iiigsT~I~~~~~fl~~l~ 505 (519)
||.|=-|.|+++|++...+ +. ++...+.-++-++.++.++
T Consensus 81 GGlS~VE~R~l~Ela~ga~~~~~~~v~~~~~~~pLsD~evi~~~~ 125 (127)
T PRK10039 81 GGLSQVEERILIELAVGSTPKGYRQLYIHPQSVPLSDSAVIQIIK 125 (127)
T ss_pred CCccHHHHHHHHHHHhhhcccccceEEEeCCCCcCCHHHHHHHHh
Confidence 8999999999999977543 23 4445555577777776664
No 23
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.72 E-value=1.6e+02 Score=23.88 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=39.0
Q ss_pred CCceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEcc-ccccChhHHHHHHhc
Q 010072 456 MGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGS-TSLDDPPQFITKMKM 506 (519)
Q Consensus 456 ~~~~viVfvvGGvTy~Ei~al~~l~~~~~~~iiigs-T~I~~~~~fl~~l~~ 506 (519)
....+||++++=+++.-+..+....++.++.+++.- +++ ..|.+.|..
T Consensus 47 ~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~---~~l~~~l~~ 95 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV---SSLERALER 95 (97)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH---HHHHHHHHh
Confidence 356889999999999999999999999999999886 333 355555544
No 24
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=23.32 E-value=1.1e+02 Score=29.52 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=33.9
Q ss_pred ceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhc
Q 010072 458 QRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKM 506 (519)
Q Consensus 458 ~~viVfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~ 506 (519)
-.+.|-|=||++-+-++-+.+ -|.+++|+|+.+...+++-+.++.
T Consensus 178 ~~~~IeVDGGI~~~ti~~l~~----aGaD~~V~GSalF~~~d~~~~i~~ 222 (228)
T PRK08091 178 VEKLISIDGSMTLELASYLKQ----HQIDWVVSGSALFSQGELKTTLKE 222 (228)
T ss_pred CCceEEEECCCCHHHHHHHHH----CCCCEEEEChhhhCCCCHHHHHHH
Confidence 357899999999887776655 399999999999865455444443
No 25
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=22.48 E-value=86 Score=29.90 Aligned_cols=41 Identities=10% Similarity=0.270 Sum_probs=31.6
Q ss_pred EEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhc
Q 010072 462 VFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKM 506 (519)
Q Consensus 462 VfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~ 506 (519)
+.|.|||+.+-++.+ ++.+.+++|.|+.|+...+..+....
T Consensus 166 i~V~gGI~~~~~~~~----~~~~ad~~VvGr~I~~a~dp~~a~~~ 206 (216)
T PRK13306 166 VSVTGGLVVEDLKLF----KGIPVKTFIAGRAIRGAADPAAAARA 206 (216)
T ss_pred EEEcCCCCHhhHHHH----hcCCCCEEEECCcccCCCCHHHHHHH
Confidence 899999999888874 33488999999999977765554443
No 26
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=20.65 E-value=73 Score=26.27 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=29.2
Q ss_pred EEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhccCCCCC
Q 010072 462 VFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDEL 512 (519)
Q Consensus 462 VfvvGGvTy~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~l~~~~~ 512 (519)
|.||||..-++-++-..+ +.|.+|.+-+.++ .+.++...+.+.+.
T Consensus 10 vlVvGgG~va~~k~~~Ll--~~gA~v~vis~~~----~~~~~~i~~~~~~~ 54 (103)
T PF13241_consen 10 VLVVGGGPVAARKARLLL--EAGAKVTVISPEI----EFSEGLIQLIRREF 54 (103)
T ss_dssp EEEEEESHHHHHHHHHHC--CCTBEEEEEESSE----HHHHTSCEEEESS-
T ss_pred EEEECCCHHHHHHHHHHH--hCCCEEEEECCch----hhhhhHHHHHhhhH
Confidence 455888877776664444 3478999988888 55555555554443
No 27
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=20.50 E-value=4.3e+02 Score=23.53 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHcCCCCCchhH---HHHHHHhCCCh
Q 010072 284 RENKLRLLMILAAIYPEKFQGEKG---QNIMKLARLQS 318 (519)
Q Consensus 284 ~~dklRLl~L~~l~~~~g~~~~~~---~~llq~~g~~~ 318 (519)
.+++||..+.-+..- ++++++++ +++.+..|+++
T Consensus 103 Ae~vL~vAv~VA~aD-G~~d~~E~avl~eI~~aLGL~p 139 (144)
T COG3793 103 AEDVLRVAVAVAEAD-GEFEAEERAVLREIAGALGLSP 139 (144)
T ss_pred HHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHhCCCH
Confidence 678999999888765 46665554 45667777753
No 28
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=20.21 E-value=1.4e+02 Score=28.37 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=33.0
Q ss_pred EEEEEEcCC-CHHHHHHHHHHHhhcCCeEEEccccccChhHHHHHHhc
Q 010072 460 IFVFIVGGA-TRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKM 506 (519)
Q Consensus 460 viVfvvGGv-Ty~Ei~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~ 506 (519)
+-|+..||+ |-.++..+.. .|.+.++.++.|..+....+.+.+
T Consensus 174 iPvia~GGI~t~~~~~~~l~----~GadgV~iGsai~~~~~~~~~~~~ 217 (221)
T PRK01130 174 CPVIAEGRINTPEQAKKALE----LGAHAVVVGGAITRPEEITKWFVD 217 (221)
T ss_pred CCEEEECCCCCHHHHHHHHH----CCCCEEEEchHhcCCHHHHHHHHH
Confidence 567889999 6777776554 378888888999998877766654
Done!