Query 010077
Match_columns 518
No_of_seqs 164 out of 443
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 19:24:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aje_A Telomere repeat-binding 99.9 7.9E-23 2.7E-27 177.6 8.2 86 396-490 8-93 (105)
2 2roh_A RTBP1, telomere binding 99.9 1.2E-21 4.1E-26 174.1 10.7 102 382-492 8-113 (122)
3 2ckx_A NGTRF1, telomere bindin 99.8 2.9E-21 9.8E-26 161.3 7.4 81 402-491 1-81 (83)
4 2juh_A Telomere binding protei 99.8 7.1E-20 2.4E-24 162.6 9.7 86 395-489 11-96 (121)
5 1x58_A Hypothetical protein 49 99.6 1.5E-16 5.1E-21 127.3 6.6 54 399-454 6-59 (62)
6 3sjm_A Telomeric repeat-bindin 99.6 7.2E-16 2.5E-20 122.5 6.1 55 399-455 9-63 (64)
7 1ity_A TRF1; helix-turn-helix, 99.5 9.7E-15 3.3E-19 116.1 6.7 63 396-460 5-67 (69)
8 1w0t_A Telomeric repeat bindin 99.5 3.8E-14 1.3E-18 107.5 5.4 52 400-453 1-52 (53)
9 2dim_A Cell division cycle 5-l 99.3 1.2E-12 4E-17 104.2 6.9 60 398-461 6-65 (70)
10 1guu_A C-MYB, MYB proto-oncoge 99.3 1.9E-12 6.5E-17 97.3 5.6 51 400-454 2-52 (52)
11 2d9a_A B-MYB, MYB-related prot 99.3 2.4E-12 8.2E-17 99.5 6.2 54 398-455 5-58 (60)
12 1gvd_A MYB proto-oncogene prot 99.3 4.9E-12 1.7E-16 95.2 6.0 51 400-454 2-52 (52)
13 1gv2_A C-MYB, MYB proto-oncoge 99.1 4.6E-11 1.6E-15 100.7 6.8 58 400-461 3-60 (105)
14 1x41_A Transcriptional adaptor 99.1 3.4E-11 1.1E-15 93.7 5.3 52 399-454 6-57 (60)
15 2k9n_A MYB24; R2R3 domain, DNA 99.1 6.8E-11 2.3E-15 100.6 5.9 57 401-461 1-57 (107)
16 3osg_A MYB21; transcription-DN 99.1 1E-10 3.5E-15 102.3 6.8 60 397-461 7-66 (126)
17 2elk_A SPCC24B10.08C protein; 99.1 7.2E-11 2.5E-15 91.5 4.5 47 401-451 9-56 (58)
18 3zqc_A MYB3; transcription-DNA 99.1 1.5E-10 5.1E-15 101.7 6.9 57 401-461 2-58 (131)
19 1h8a_C AMV V-MYB, MYB transfor 99.0 1.7E-10 6E-15 100.6 6.2 58 400-461 26-83 (128)
20 2din_A Cell division cycle 5-l 98.9 3.4E-10 1.2E-14 89.1 3.5 54 399-458 7-60 (66)
21 2yum_A ZZZ3 protein, zinc fing 98.9 4.8E-10 1.6E-14 90.0 4.5 55 398-456 5-64 (75)
22 2cu7_A KIAA1915 protein; nucle 98.9 7.6E-10 2.6E-14 88.7 4.8 54 399-457 7-60 (72)
23 2yus_A SWI/SNF-related matrix- 98.9 1.1E-09 3.9E-14 90.3 4.8 52 396-452 13-64 (79)
24 1h89_C C-MYB, MYB proto-oncoge 98.9 2.8E-09 9.5E-14 95.9 6.5 58 400-461 57-114 (159)
25 1h89_C C-MYB, MYB proto-oncoge 98.8 5.9E-10 2E-14 100.3 1.9 58 400-461 5-62 (159)
26 3zqc_A MYB3; transcription-DNA 98.8 4.2E-09 1.4E-13 92.5 6.9 57 401-462 54-110 (131)
27 2llk_A Cyclin-D-binding MYB-li 98.8 2.2E-09 7.5E-14 87.8 4.4 50 398-453 20-69 (73)
28 1gv2_A C-MYB, MYB proto-oncoge 98.7 8.5E-09 2.9E-13 86.8 5.8 49 400-453 55-103 (105)
29 2cqr_A RSGI RUH-043, DNAJ homo 98.7 8.3E-09 2.8E-13 84.3 4.8 54 396-453 13-69 (73)
30 3osg_A MYB21; transcription-DN 98.7 1.8E-08 6.1E-13 88.1 6.0 52 400-456 61-112 (126)
31 2k9n_A MYB24; R2R3 domain, DNA 98.6 1.5E-08 5.3E-13 86.1 4.2 49 401-454 53-101 (107)
32 1h8a_C AMV V-MYB, MYB transfor 98.6 2.4E-08 8.2E-13 87.0 5.5 50 400-454 78-127 (128)
33 2ltp_A Nuclear receptor corepr 98.0 6.7E-09 2.3E-13 86.9 0.0 50 400-454 15-64 (89)
34 2cjj_A Radialis; plant develop 98.4 2.5E-07 8.6E-12 78.7 4.3 49 401-453 8-59 (93)
35 1ign_A Protein (RAP1); RAP1,ye 98.2 1.2E-06 4.1E-11 86.0 4.8 53 400-456 7-64 (246)
36 2eqr_A N-COR1, N-COR, nuclear 98.1 4.3E-06 1.5E-10 65.3 6.1 52 396-452 7-58 (61)
37 2cqq_A RSGI RUH-037, DNAJ homo 97.8 1.4E-05 4.7E-10 65.1 4.4 49 400-453 7-58 (72)
38 3hm5_A DNA methyltransferase 1 97.6 4.7E-05 1.6E-09 65.2 4.9 52 402-454 31-83 (93)
39 2iw5_B Protein corest, REST co 97.3 0.0002 7E-09 69.9 4.8 50 398-452 130-179 (235)
40 1wgx_A KIAA1903 protein; MYB D 97.2 0.00039 1.3E-08 57.2 5.6 48 402-453 9-59 (73)
41 2ebi_A DNA binding protein GT- 97.1 0.00017 6E-09 59.0 2.3 54 399-453 2-65 (86)
42 1fex_A TRF2-interacting telome 97.0 0.00059 2E-08 53.5 4.1 49 401-452 2-58 (59)
43 4b4c_A Chromodomain-helicase-D 96.9 0.00085 2.9E-08 62.2 5.2 52 401-452 134-195 (211)
44 4iej_A DNA methyltransferase 1 96.6 0.0019 6.4E-08 55.5 4.7 50 403-453 32-82 (93)
45 2yqk_A Arginine-glutamic acid 96.3 0.0088 3E-07 47.0 6.7 52 398-453 6-57 (63)
46 2xb0_X Chromo domain-containin 96.0 0.0034 1.2E-07 62.3 3.2 31 402-432 169-199 (270)
47 2crg_A Metastasis associated p 95.8 0.017 5.9E-07 46.4 6.1 52 398-453 5-56 (70)
48 4eef_G F-HB80.4, designed hema 95.3 0.0055 1.9E-07 50.8 1.7 44 401-448 20-66 (74)
49 2xag_B REST corepressor 1; ami 95.1 0.016 5.3E-07 61.8 4.6 49 399-452 378-426 (482)
50 1ofc_X ISWI protein; nuclear p 94.9 0.012 4.2E-07 59.4 3.2 53 401-453 212-275 (304)
51 4b4c_A Chromodomain-helicase-D 94.1 0.044 1.5E-06 50.7 4.5 53 398-452 4-58 (211)
52 2y9y_A Imitation switch protei 93.4 0.049 1.7E-06 56.5 4.0 53 401-453 228-291 (374)
53 4a69_C Nuclear receptor corepr 93.4 0.11 3.6E-06 44.0 5.4 47 398-449 40-86 (94)
54 1irz_A ARR10-B; helix-turn-hel 93.4 0.17 5.7E-06 40.8 6.1 54 397-452 3-61 (64)
55 1ug2_A 2610100B20RIK gene prod 88.8 0.33 1.1E-05 41.9 3.8 51 399-453 31-83 (95)
56 2lr8_A CAsp8-associated protei 85.6 0.16 5.6E-06 41.6 0.0 49 400-453 13-63 (70)
57 2xb0_X Chromo domain-containin 84.9 1.2 4.2E-05 44.2 6.0 51 400-452 2-54 (270)
58 1ign_A Protein (RAP1); RAP1,ye 84.3 0.77 2.6E-05 45.4 4.2 28 422-453 172-199 (246)
59 2xag_B REST corepressor 1; ami 62.1 1.6 5.6E-05 46.6 0.0 47 402-453 190-236 (482)
60 1ofc_X ISWI protein; nuclear p 52.8 14 0.00048 37.3 5.0 48 401-452 110-157 (304)
No 1
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.87 E-value=7.9e-23 Score=177.55 Aligned_cols=86 Identities=37% Similarity=0.646 Sum_probs=74.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCcccccccCCCCCCC
Q 010077 396 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPI 475 (518)
Q Consensus 396 krRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~pi 475 (518)
++|+++++||+|||++|++||++||.|+|+.|+..+|..|++||++|||||||||++.+... |.. | .+.||
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~-p~~-----~---rg~~~ 78 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKIS-PQQ-----R---RGEPV 78 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCC-TTT-----T---TCCSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCC-ccc-----c---cCCCC
Confidence 56788999999999999999999999999999987777789999999999999999977652 322 2 46899
Q ss_pred ChHHHHHHHHHHhhc
Q 010077 476 PMPVLLRVRELAEMQ 490 (518)
Q Consensus 476 P~~iL~RVreLA~~~ 490 (518)
|+++|+||++|++..
T Consensus 79 P~~~l~rv~~~~~~~ 93 (105)
T 2aje_A 79 PQELLNRVLNAHGYW 93 (105)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998874
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.86 E-value=1.2e-21 Score=174.15 Aligned_cols=102 Identities=35% Similarity=0.533 Sum_probs=81.9
Q ss_pred CCCCCcccccCCCC----CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCC
Q 010077 382 PDDNPATVRAVKGG----VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQ 457 (518)
Q Consensus 382 s~d~~~~~p~~k~g----krRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q 457 (518)
+.+..+.+|..|.+ .+||++++||.|||++|++||++||.|+|+.|+..+|..|.+||++|||||||||++.+...
T Consensus 8 ~~~~~~~~p~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~ 87 (122)
T 2roh_A 8 NSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIA 87 (122)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CcccccccCcccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCC
Confidence 33344444544432 67888999999999999999999999999999998777889999999999999999866542
Q ss_pred CCCCcccccccCCCCCCCChHHHHHHHHHHhhcCC
Q 010077 458 TPPDSRMGARKHASSVPIPMPVLLRVRELAEMQSQ 492 (518)
Q Consensus 458 ~p~~~g~~~Rk~~~~~piP~~iL~RVreLA~~~~~ 492 (518)
|.. + +..++|+++++||+++...+.+
T Consensus 88 -p~~-----k---r~~~~p~e~~~~v~~~h~~~g~ 113 (122)
T 2roh_A 88 -PQQ-----R---RGAPVPQELLDRVLAAQAYWSV 113 (122)
T ss_dssp -TTT-----C---CCSSCCHHHHHHHHHHHHHHHS
T ss_pred -ccc-----c---CCCCCCHHHHHHHHHHHHHHhh
Confidence 322 1 3678999999999998877653
No 3
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.84 E-value=2.9e-21 Score=161.28 Aligned_cols=81 Identities=38% Similarity=0.654 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCcccccccCCCCCCCChHHHH
Q 010077 402 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPVLL 481 (518)
Q Consensus 402 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~piP~~iL~ 481 (518)
++||+|||++|++||++||.|+|++|++.+|..|++||++|||||||||++.+... |.. + .+.|||+++|+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~-p~~------~--~~~~~p~~~~~ 71 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA-PQQ------R--RGEPVPQDLLD 71 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC-GGG------C--CSSCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCC-ccc------c--cCCCCCHHHHH
Confidence 58999999999999999999999999988777789999999999999999976541 211 1 47899999999
Q ss_pred HHHHHHhhcC
Q 010077 482 RVRELAEMQS 491 (518)
Q Consensus 482 RVreLA~~~~ 491 (518)
||++|.....
T Consensus 72 rv~~~~a~~~ 81 (83)
T 2ckx_A 72 RVLAAHAYWS 81 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.80 E-value=7.1e-20 Score=162.62 Aligned_cols=86 Identities=37% Similarity=0.633 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCcccccccCCCCCC
Q 010077 395 GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVP 474 (518)
Q Consensus 395 gkrRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~p 474 (518)
.+.++++++||+|||++|++||++||.|+|+.|+..+++.|.+||++|||||||||++.+..+ |.. + .+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~-p~~-----k---rg~~ 81 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA-PQQ-----R---RGEP 81 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTC-STT-----C---CCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccC-Ccc-----c---CCCC
Confidence 367888999999999999999999999999999998777889999999999999999865542 221 1 3669
Q ss_pred CChHHHHHHHHHHhh
Q 010077 475 IPMPVLLRVRELAEM 489 (518)
Q Consensus 475 iP~~iL~RVreLA~~ 489 (518)
+|+++++||+++...
T Consensus 82 ~p~e~~~rv~~~h~~ 96 (121)
T 2juh_A 82 VPQDLLDRVLAAHAY 96 (121)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998877
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.5e-16 Score=127.28 Aligned_cols=54 Identities=28% Similarity=0.414 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 010077 399 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 454 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 454 (518)
+.+++||+||+++|++||++||. +|+.|+..+ ..|.+||+||||||||||.|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y-~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSF-PFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHS-CCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhC-CCccCcccchHHHHHHHHHhcc
Confidence 56889999999999999999999 999999754 3479999999999999999864
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=7.2e-16 Score=122.50 Aligned_cols=55 Identities=33% Similarity=0.727 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 010077 399 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 455 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~ 455 (518)
+++++||+|||++|+++|++||.|+|+.|+... .|.+||++||+|||+||+++++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNY--PFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS--CCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhc--CCCCCCHHHHHHHHHHHhccCC
Confidence 456789999999999999999999999998642 3679999999999999999875
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.53 E-value=9.7e-15 Score=116.13 Aligned_cols=63 Identities=40% Similarity=0.678 Sum_probs=54.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCC
Q 010077 396 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPP 460 (518)
Q Consensus 396 krRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~ 460 (518)
..++++++||+||+++|+++|++||.++|+.|+... .|.+||++||++||+|++++.+.+...
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--KFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS--CCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc--CcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 346778999999999999999999999999998531 133999999999999999999886543
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.47 E-value=3.8e-14 Score=107.53 Aligned_cols=52 Identities=44% Similarity=0.760 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
++++||+|||+.|+++|++||.++|+.|... ..|.+||++||++||+|+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~--~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLH--YKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHH--SCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--cCCCCCCHHHHHHHHHHHHcc
Confidence 3689999999999999999999999999853 113399999999999999875
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=104.22 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 010077 398 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 461 (518)
Q Consensus 398 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 461 (518)
..++.+||+||++.|+++|++||.++|..|.. .+++||..||++||.|++++.+.++||.
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt 65 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIAS----LLHRKSAKQCKARWYEWLDPSIKKTEWS 65 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHH----HSTTCCHHHHHHHHHHTSCSSSCCCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HhcCCCHHHHHHHHHHHcCCcccCCCCC
Confidence 34578999999999999999999999999984 3679999999999999999999999996
No 10
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.31 E-value=1.9e-12 Score=97.32 Aligned_cols=51 Identities=27% Similarity=0.504 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 454 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 454 (518)
++.+||+|||+.|+++|++||.++|..|.. .|++||..+|++||.+++.+.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN----YLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHH----TSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HcCCCCHHHHHHHHHHHcCcC
Confidence 367999999999999999999999999983 378999999999999999763
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=2.4e-12 Score=99.49 Aligned_cols=54 Identities=20% Similarity=0.402 Sum_probs=48.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 010077 398 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 455 (518)
Q Consensus 398 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~ 455 (518)
..++.+||+|||+.|+++|++||.++|..|.. .|++||..+|++||.+++++.+
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLAS----HFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH----HCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HccCCCHHHHHHHHHHHcCCcc
Confidence 45578999999999999999999999999984 3789999999999999999865
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.27 E-value=4.9e-12 Score=95.23 Aligned_cols=51 Identities=31% Similarity=0.608 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 454 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 454 (518)
++.+||+|||+.|+++|++||.++|..|.. .|++||..+|++||.|++.+.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHT----TSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHH----HcCCCCHHHHHHHHHHHcCcC
Confidence 367999999999999999999999999973 478999999999999998763
No 13
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.15 E-value=4.6e-11 Score=100.65 Aligned_cols=58 Identities=28% Similarity=0.509 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 461 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 461 (518)
++++||+||++.|+++|++||.++|..|. ..+++||+.+|++||++++.+.+..+||.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia----~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 60 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIA----KHLKGRIGKQCRERWHNHLNPEVKKTSWT 60 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHH----TTSTTCCHHHHHHHHHHTTCCCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHh----hhhcCCCHHHHHHHHHhccCCcccccCCC
Confidence 36799999999999999999999999997 34789999999999999999998888885
No 14
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.15 E-value=3.4e-11 Score=93.66 Aligned_cols=52 Identities=21% Similarity=0.482 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 010077 399 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 454 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 454 (518)
..+.+||+|||+.|+++|++||.++|..|.. .+++||..+|++||.+++...
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVAN----QMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHH----HHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHH----HhCCCCHHHHHHHHHHHccCC
Confidence 4577999999999999999999999999984 357999999999999998754
No 15
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.10 E-value=6.8e-11 Score=100.62 Aligned_cols=57 Identities=26% Similarity=0.478 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 010077 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 461 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 461 (518)
+.+||+|||+.|+++|++||.++|..|.. .+++||+.+|++||.|++.+.+..+||.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT 57 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ----LMITRNPRQCRERWNNYINPALRTDPWS 57 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHH----HTTTSCHHHHHHHHHHHSSSCCTTCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhh----hcCCCCHHHHHHHHHHHHcccccccccC
Confidence 46899999999999999999999999973 4689999999999999999999888885
No 16
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.10 E-value=1e-10 Score=102.28 Aligned_cols=60 Identities=27% Similarity=0.525 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 010077 397 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 461 (518)
Q Consensus 397 rRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 461 (518)
+..++++||+|||+.|+++|++||. +|..|. ..+++||..+|++||+|.+.+.+.+++|.
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia----~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT 66 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIA----ATFPNRNARQCRDRWKNYLAPSISHTPWT 66 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHH----HTCTTCCHHHHHHHHHHHTSTTSCCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHH----HHcCCCCHHHHHHHHhhhcccccccccCC
Confidence 3456789999999999999999999 999997 34789999999999999999999888996
No 17
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.08 E-value=7.2e-11 Score=91.52 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCC-CCChhhHHHHHHHhh
Q 010077 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS-YRTSVDLKDKWRNLL 451 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~-~RT~VDLKDKWRNLl 451 (518)
+.+||+|||+.|+++|++||.++|..|.. .++ +||..+|++||.++.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~----~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIAD----YVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHH----HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HHCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999999984 356 899999999999874
No 18
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.07 E-value=1.5e-10 Score=101.67 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 010077 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 461 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 461 (518)
+++||+|||+.|+++|++||.++|..|. ..+++||+.||++||.|.+.+.+.+++|.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 58 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRIT----SFLPNRSPKQCRERWFNHLDPAVVKHAWT 58 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGT----TSCTTSCHHHHHHHHHHHTSTTCCCSCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHH----HHHCCCCHHHHHHHHhhccCccccCCCCC
Confidence 5789999999999999999999999997 44789999999999999999999988885
No 19
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.05 E-value=1.7e-10 Score=100.58 Aligned_cols=58 Identities=29% Similarity=0.603 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 461 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 461 (518)
.+++||+|||+.|+++|++||.++|..|.. .+++||..+|++||.+++.+.+..+||.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT 83 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAK----HLKGRIGKQCRERWHNHLNPEVKKTSWT 83 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHH----HSSSCCHHHHHHHHHHTTCSSSCCSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHH----HhcCCcHHHHHHHHHHhcccccccccCC
Confidence 467999999999999999999999999983 3789999999999999999998888885
No 20
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=3.4e-10 Score=89.07 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=47.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCC
Q 010077 399 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQT 458 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~ 458 (518)
.++.+||.||++.|+++|++||. +|..|.. +.+||..+|++||.+++++.+...
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-----~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-----IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-----HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-----ccCcCHHHHHHHHHHHhChHhcCC
Confidence 34679999999999999999999 9999984 357999999999999999887654
No 21
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=4.8e-10 Score=90.05 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=47.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC-----CCchhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 010077 398 RKHHRAWTLSEVMKLVEGVSKYGA-----GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 456 (518)
Q Consensus 398 RK~rr~WT~EEveaLv~GVeKyG~-----GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 456 (518)
...+.+||.||++.|+++|++||. ++|..|.. .+.+||..||+++|.+++.....
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~----~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD----ELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH----HHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH----HhCCCCHHHHHHHHHHHHHHHHh
Confidence 345679999999999999999996 79999984 36799999999999999887543
No 22
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.92 E-value=7.6e-10 Score=88.70 Aligned_cols=54 Identities=26% Similarity=0.491 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCC
Q 010077 399 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQ 457 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q 457 (518)
..+.+||+||++.|+++|++||. +|..|.. .|++||..+||++|.++++.....
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~----~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISK----LIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH----HHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999 9999984 368999999999999999876653
No 23
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=90.29 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=45.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 010077 396 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 396 krRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 452 (518)
..+..+.+||.||++.|+++|++|| ++|..|.. .+.+||..+|+.+|.++.-
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~----~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSE----HVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHH----HHSSCCHHHHHHHHTTSCC
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHH----HcCCCCHHHHHHHHHHhcc
Confidence 4455678999999999999999999 89999984 3578999999999999833
No 24
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.85 E-value=2.8e-09 Score=95.93 Aligned_cols=58 Identities=28% Similarity=0.527 Sum_probs=52.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 461 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 461 (518)
.+.+||+||++.|+++|++||.++|..|.. .+++||..+|+++|.+++.+.+..+||.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT 114 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPEVKKTSWT 114 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHH----TSTTCCHHHHHHHHHHTTCTTSCCSCCC
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHH----HcCCCCHHHHHHHHHHHhCccccccCCC
Confidence 367999999999999999999999999973 4789999999999999999888777775
No 25
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.84 E-value=5.9e-10 Score=100.32 Aligned_cols=58 Identities=28% Similarity=0.475 Sum_probs=18.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 461 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 461 (518)
.+++||+|||+.|+++|++||.++|..|. ..+++||+.+|++||+|++.+.+.++||.
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia----~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 62 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIA----NYLPNRTDVQCQHRWQKVLNPELIKGPWT 62 (159)
T ss_dssp ------------------------------------------CHHHHHHTTTCTTCCCSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHH----HHcCCCCHHHHHHHHHHccCCCcCCCCCC
Confidence 46789999999999999999999999997 34689999999999999999998888885
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.84 E-value=4.2e-09 Score=92.48 Aligned_cols=57 Identities=23% Similarity=0.460 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCc
Q 010077 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDS 462 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~ 462 (518)
+.+||+||++.|+++|.+||. +|+.|. ..|++||..+|++||.++++..+...+|.+
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia----~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIA----KLIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHT----TTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHH----HHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 568999999999999999997 999997 347899999999999999999988877764
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.83 E-value=2.2e-09 Score=87.83 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=43.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 398 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 398 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
.-.+.+||+|||+.|+++|++||. +|+.|.+ .| +||..+||++|+.|.+.
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~----~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIGA----AL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH----HH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH----Hh-CCCHHHHHHHHHHHHHH
Confidence 345789999999999999999998 6999984 36 99999999999987653
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.75 E-value=8.5e-09 Score=86.80 Aligned_cols=49 Identities=24% Similarity=0.533 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
.+.+||+||++.|+++|++||. +|+.|. ..|++||..+|+++|+++++.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia----~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIA----KLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHH----TTCTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHH----HHcCCCCHHHHHHHHHHHHhc
Confidence 3679999999999999999997 999997 347899999999999999875
No 29
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.72 E-value=8.3e-09 Score=84.33 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=46.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCC---CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 396 VRRKHHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 396 krRK~rr~WT~EEveaLv~GVeKyG~---GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
+.+-.+.+||.+|+.+|+.+|++||. .+|..|+ ..+++||..+|+.+|.+|+..
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA----~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA----RCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG----GGCSSSCHHHHHHHHHHHHSS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH----HHcCCCCHHHHHHHHHHHHHc
Confidence 33456789999999999999999994 5899997 447899999999999999864
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.68 E-value=1.8e-08 Score=88.08 Aligned_cols=52 Identities=27% Similarity=0.580 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 456 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 456 (518)
.+.+||.||++.|+++|++||. +|+.|. ..|++||..+|++||++|++.--.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia----~~l~gRt~~~~k~rw~~l~~k~~~ 112 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIA----KFFPGRTDIHIKNRWVTISNKLGI 112 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHH----TTSTTCCHHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHH----HHcCCCCHHHHHHHHHHHHHhcCC
Confidence 3568999999999999999996 999997 347899999999999999885433
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.64 E-value=1.5e-08 Score=86.10 Aligned_cols=49 Identities=20% Similarity=0.587 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 010077 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 454 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 454 (518)
+.+||+||++.|+++|.+||. +|+.|.. .|++||..+||+||.+|++..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP-KWNKISK----FLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS-CHHHHHH----HHSSSCHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc-CHHHHHH----HCCCCCHHHHHHHHHHHHhhH
Confidence 579999999999999999998 9999984 368999999999999999863
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.64 E-value=2.4e-08 Score=87.05 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 454 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 454 (518)
.+.+||+||++.|+++|++||. +|+.|.. .|++||..+||++|+++++..
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK----LLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGG----GSTTCCHHHHHHHHHTTTTC-
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHH----HCCCCCHHHHHHHHHHHHhcc
Confidence 3679999999999999999998 9999973 478999999999999998753
No 33
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.99 E-value=6.7e-09 Score=86.86 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 454 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s 454 (518)
.+.+||.||++.|+++|++||. +|..|. ..|++||..+|+++|.++++..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA----~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIA----RMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 3679999999999999999999 899997 3478999999999999998853
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.36 E-value=2.5e-07 Score=78.75 Aligned_cols=49 Identities=22% Similarity=0.516 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHhhC---CCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 401 HRAWTLSEVMKLVEGVSKYG---AGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG---~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
..+||.||+..|++++++|| ..+|..|+. .+++||..+|+.+|.+|+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~----~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVAR----AVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH----HSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH----HcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999998 457999983 47899999999999999754
No 35
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.16 E-value=1.2e-06 Score=85.95 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCC-----chhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGAGR-----WSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 456 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~Gk-----Wk~Il~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 456 (518)
.+.+||+|||+.|++.|++||..+ |..|+ ..+++||.-+||++|++++++.+.
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA----k~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS----HYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT----TTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHH----HHcCCCCHHHHHHHHHHHHhhhcc
Confidence 467999999999999999999853 99997 348999999999999999998774
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=4.3e-06 Score=65.33 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=45.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 010077 396 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 396 krRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 452 (518)
+.|+...+||++|.+.+++|+.+||. +|..|. ..+++||..||...|....|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia----~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA----SYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH----HHCTTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH----HHcCCCCHHHHHHHHHHhcC
Confidence 55677899999999999999999996 999997 33789999999999977654
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.82 E-value=1.4e-05 Score=65.10 Aligned_cols=49 Identities=24% Similarity=0.483 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~---GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
....||.||+..|.+++.+|+. .+|..|+.. + +||..|++.+|..|...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~----l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE----L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH----H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH----h-CCCHHHHHHHHHHHHHh
Confidence 3568999999999999999994 579999842 3 79999999999999876
No 38
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.63 E-value=4.7e-05 Score=65.22 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhh-cccCCCCChhhHHHHHHHhhccc
Q 010077 402 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLA-FASYSYRTSVDLKDKWRNLLKAS 454 (518)
Q Consensus 402 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~-f~~f~~RT~VDLKDKWRNLlK~s 454 (518)
.+||.||++.|.+.+++||. +|..|.+.+ +..+..||-.|||+||..+.+.-
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l 83 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999 999998632 12346899999999998887753
No 39
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.26 E-value=0.0002 Score=69.93 Aligned_cols=50 Identities=24% Similarity=0.454 Sum_probs=44.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 010077 398 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 398 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 452 (518)
.+...+||+||.+.+++|+.+||. +|..|.+ .+.+||..+||..|.+..+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk----~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISD----VIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH----HHSSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHH
Confidence 466889999999999999999998 9999984 3689999999999987665
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.24 E-value=0.00039 Score=57.19 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHhhCC---CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 402 RAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 402 r~WT~EEveaLv~GVeKyG~---GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
..||.+|+.+|.+++..|+. ++|..|. ..+++||..+|+.+|..|.+.
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA----~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVA----AAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHH----HHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHH----HHcCCCCHHHHHHHHHHHHhc
Confidence 57999999999999999986 6899997 347889999999999998654
No 41
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.11 E-value=0.00017 Score=59.00 Aligned_cols=54 Identities=28% Similarity=0.429 Sum_probs=41.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---------CCchhhhhh-hcccCCCCChhhHHHHHHHhhcc
Q 010077 399 KHHRAWTLSEVMKLVEGVSKYGA---------GRWSEIKRL-AFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~---------GkWk~Il~~-~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
++...||.+|+.+|+.....+-. ..|..|... .-.-| .||+.+|++||.||.+.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~-~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF-DRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHH
Confidence 45788999999999999975322 279999752 11112 79999999999999995
No 42
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.99 E-value=0.00059 Score=53.51 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 010077 401 HRAWTLSEVMKLVEGVSKY--------GAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKy--------G~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 452 (518)
|.+||+|||.+|++-|.+| |.--|+.|.. ..++.+|-..++|||+.-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~---~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEK---SSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHH---SCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHH---hHCCCCCHHHHHHHHHHHcc
Confidence 6799999999999999999 6667988863 24789999999999998664
No 43
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.90 E-value=0.00085 Score=62.19 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccC----------CCCChhhHHHHHHHhhc
Q 010077 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASY----------SYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f----------~~RT~VDLKDKWRNLlK 452 (518)
...||.+||..|+.||.+||.|+|..|+.+....| ..++++.|..|--.|++
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 35699999999999999999999999997643212 23455566666444443
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.62 E-value=0.0019 Score=55.49 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCchhhhhhhc-ccCCCCChhhHHHHHHHhhcc
Q 010077 403 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAF-ASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 403 ~WT~EEveaLv~GVeKyG~GkWk~Il~~~f-~~f~~RT~VDLKDKWRNLlK~ 453 (518)
.||.||++.|.+.+++|+. +|-.|.+.+- ..+..||--|||+||-.+.+.
T Consensus 32 ~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 32 AWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999999 9999986432 234689999999998776654
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.34 E-value=0.0088 Score=47.04 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=42.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 398 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 398 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
+-....||+||.+...+|+.+||. .|..|... .++.||..||..-|-...|.
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~wKkt 57 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE---LLPNKETGELITFYYYWKKT 57 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH---SCTTSCHHHHHHHHHHHHCS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCcHHHHHHHHhcccCC
Confidence 344679999999999999999999 89999731 36899999999887654443
No 46
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.95 E-value=0.0034 Score=62.34 Aligned_cols=31 Identities=45% Similarity=0.811 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhc
Q 010077 402 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF 432 (518)
Q Consensus 402 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f 432 (518)
-.|+.+||..|+.||.+||.|+|..|+.+..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~ 199 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDPF 199 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCTT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCcc
Confidence 4699999999999999999999999997644
No 47
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.79 E-value=0.017 Score=46.37 Aligned_cols=52 Identities=15% Similarity=0.365 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 398 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 398 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
|+....||++|.+...+|+.+||. +|..|.. ..+++||..||..-|-...+.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~---~~v~~Kt~~~~v~fYY~wKkt 56 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQ---DFLPWKSLTSIIEYYYMWKTT 56 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHH---TTCSSSCHHHHHHHHHHHHTC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHH---HHcCCCCHHHHHHHHHhhcCC
Confidence 567889999999999999999999 8999973 137899999999988755554
No 48
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=95.33 E-value=0.0055 Score=50.78 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC---CchhhhhhhcccCCCCChhhHHHHHH
Q 010077 401 HRAWTLSEVMKLVEGVSKYGAG---RWSEIKRLAFASYSYRTSVDLKDKWR 448 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~G---kWk~Il~~~f~~f~~RT~VDLKDKWR 448 (518)
-..||.+|..+|..++.+|+.+ +|.+|+ ..+++||..+++..+.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA----~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVA----QYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTG----GGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH----HHcCCCCHHHHHHHHH
Confidence 4579999999999999999976 999997 4578999999987764
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.05 E-value=0.016 Score=61.82 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 010077 399 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 452 (518)
+...+||.+|.+.+++||.+||. +|..|.. .+..||..+||.-|.+..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~----~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISD----VIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHH----HHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HhCCCCHHHHHHHHHHHHH
Confidence 55789999999999999999998 9999984 3678999999998876444
No 50
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.94 E-value=0.012 Score=59.36 Aligned_cols=53 Identities=23% Similarity=0.289 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---CCchhhhhh-------hcc-cCCCCChhhHHHHHHHhhcc
Q 010077 401 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-------AFA-SYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~---GkWk~Il~~-------~f~-~f~~RT~VDLKDKWRNLlK~ 453 (518)
.+.||.+|+..|+-++.+||. |.|..|+.. .|+ .|..||+.+|..|-..|++.
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 458999999999999999999 999999742 122 23699999999999999875
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.06 E-value=0.044 Score=50.71 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=41.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC--CCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 010077 398 RKHHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 398 RK~rr~WT~EEveaLv~GVeKyG--~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 452 (518)
|.....||..|...|+.++.+|| .++|..|..+ ..|.++|..++++=++.+..
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~d--a~L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD--AELVDKSETDLRRLGELVHN 58 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHH--TTCTTSCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHH--hccCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999 6899999865 34789999999986555443
No 52
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.44 E-value=0.049 Score=56.50 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---CCchhhhhh-----h--ccc-CCCCChhhHHHHHHHhhcc
Q 010077 401 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-----A--FAS-YSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~---GkWk~Il~~-----~--f~~-f~~RT~VDLKDKWRNLlK~ 453 (518)
.+.||.+||..|+.++.+||. |.|..|+.. . |+- |..||+..|..|-..|++.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~ 291 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC 291 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 458999999999999999999 999999753 1 222 4789999999999999885
No 53
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=93.40 E-value=0.11 Score=44.03 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=40.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHH
Q 010077 398 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRN 449 (518)
Q Consensus 398 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRN 449 (518)
|+....||++|-+.+.+++..||. +|..|. ..+++||..+|-.=+-.
T Consensus 40 r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia----~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 40 RQVMNMWSEQEKETFREKFMQHPK-NFGLIA----SFLERKTVAECVLYYYL 86 (94)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH----HTCTTCCHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH----HHcCCCCHHHHHHHHhc
Confidence 466789999999999999999998 999996 34799999999876543
No 54
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.36 E-value=0.17 Score=40.78 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=41.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCC--CchhhhhhhcccCCCCChhhHHH---HHHHhhc
Q 010077 397 RRKHHRAWTLSEVMKLVEGVSKYGAG--RWSEIKRLAFASYSYRTSVDLKD---KWRNLLK 452 (518)
Q Consensus 397 rRK~rr~WT~EEveaLv~GVeKyG~G--kWk~Il~~~f~~f~~RT~VDLKD---KWRNLlK 452 (518)
.+|+|-.||+|+-+.++++|+++|.. .|+.|++.- ...+.|..+++- |||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M--~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLM--NVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH
Confidence 36778999999999999999999953 277887531 246889999984 5665544
No 55
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=88.83 E-value=0.33 Score=41.87 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC--CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 399 KHHRAWTLSEVMKLVEGVSKYGA--GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 399 K~rr~WT~EEveaLv~GVeKyG~--GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
.+--.||.|||..++...++-|. -.|+.|. ..|.+|+.-++++||+.|++-
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA----~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQGAQPHTFSVIS----QQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHH----HHHSSCCHHHHHHHHHHHHHH
T ss_pred CEEEEeccccCHHHHHHHHhcCCChhHHHHHH----HHHccCCHHHHHHHHHHHHHH
Confidence 45678999999999999999986 5788886 346789999999999999884
No 56
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=85.56 E-value=0.16 Score=41.65 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC--CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 400 HHRAWTLSEVMKLVEGVSKYGA--GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG~--GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
.--.||.|||..++...++-|. -.|+.|. ..+ +|+.-++++|++.|++-
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA----~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLA----AKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 3567999999999999999997 5788886 346 89999999999999874
No 57
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=84.93 E-value=1.2 Score=44.19 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--CCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 010077 400 HHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 400 ~rr~WT~EEveaLv~GVeKyG--~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 452 (518)
+++.||..|...|++++.+|| .++|..|..+ ..|..+....++.=+..|+.
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~d--A~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIAD--GTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHT--TSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh--cccccCCHHHHHHHHHHHHH
Confidence 467899999999999999999 4899999865 45788998888876655443
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=84.28 E-value=0.77 Score=45.36 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=23.3
Q ss_pred CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 422 GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 422 GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
+.|+.|. ..|++||....||||+.+++.
T Consensus 172 ~~fk~ia----~~~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 172 EFFKHFA----EEHAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp THHHHHH----HHTTTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHH----HHCCCCChhhHHHHHHHHHhh
Confidence 3688886 347899999999999988874
No 59
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=62.08 E-value=1.6 Score=46.62 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 010077 402 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 453 (518)
Q Consensus 402 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK~ 453 (518)
..||.+|...+.+|+.+||. +|..|.+ .+++||..+|-.-|....|.
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~----~lp~Ksv~e~V~yYY~WKKt 236 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQ----MLPDKSIASLVKFYYSWKKT 236 (482)
T ss_dssp ----------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHH----HcCCCCHHHHHHHhcccccc
Confidence 47999999999999999999 8999973 47899999998765544443
No 60
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=52.80 E-value=14 Score=37.30 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 010077 401 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 452 (518)
Q Consensus 401 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 452 (518)
-..||..+-.+++.|+++||...|..|. ..+.+.|..+++.=...+..
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA----~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIA----KDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHT----TSSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHH----HHhcCCCHHHHHHHHHHHHH
Confidence 5579999999999999999999999997 34568999999877666555
Done!