Query 010079
Match_columns 518
No_of_seqs 135 out of 168
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 20:48:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1340 Uncharacterized archae 99.7 1.5E-13 3.3E-18 139.4 31.7 220 89-321 9-242 (294)
2 COG1340 Uncharacterized archae 98.4 0.0015 3.3E-08 67.3 31.0 85 245-329 173-257 (294)
3 PRK03918 chromosome segregatio 97.9 0.021 4.5E-07 66.3 31.5 29 90-118 456-484 (880)
4 TIGR00606 rad50 rad50. This fa 97.8 0.023 4.9E-07 69.4 30.7 230 89-331 712-972 (1311)
5 COG1196 Smc Chromosome segrega 97.7 0.03 6.6E-07 67.6 31.0 14 30-43 58-71 (1163)
6 TIGR02169 SMC_prok_A chromosom 97.7 0.052 1.1E-06 64.2 32.1 46 90-135 678-723 (1164)
7 PRK11637 AmiB activator; Provi 97.7 0.075 1.6E-06 57.3 30.3 51 89-139 43-93 (428)
8 TIGR02169 SMC_prok_A chromosom 97.7 0.024 5.3E-07 66.9 28.8 50 93-142 674-723 (1164)
9 KOG0161 Myosin class II heavy 97.7 0.063 1.4E-06 67.3 32.6 244 100-350 936-1202(1930)
10 TIGR02168 SMC_prok_B chromosom 97.6 0.11 2.4E-06 61.3 32.7 68 89-156 673-740 (1179)
11 COG1196 Smc Chromosome segrega 97.6 0.14 3E-06 62.0 33.1 51 91-141 672-722 (1163)
12 PRK03918 chromosome segregatio 97.5 0.22 4.8E-06 57.9 33.2 33 89-121 447-480 (880)
13 PHA02562 46 endonuclease subun 97.5 0.22 4.9E-06 54.8 31.8 66 245-310 338-403 (562)
14 TIGR02168 SMC_prok_B chromosom 97.5 0.18 3.9E-06 59.5 32.5 45 89-133 680-724 (1179)
15 PF07888 CALCOCO1: Calcium bin 97.5 0.16 3.4E-06 56.8 29.2 187 91-295 141-327 (546)
16 PRK04778 septation ring format 97.5 0.095 2.1E-06 58.8 27.9 68 266-333 377-444 (569)
17 PRK02224 chromosome segregatio 97.5 0.4 8.8E-06 55.9 34.6 76 246-321 365-447 (880)
18 COG1579 Zn-ribbon protein, pos 97.4 0.067 1.5E-06 54.1 23.6 161 122-315 25-185 (239)
19 PHA02562 46 endonuclease subun 97.4 0.23 5.1E-06 54.6 29.3 56 251-306 337-392 (562)
20 TIGR00606 rad50 rad50. This fa 97.3 0.4 8.7E-06 58.9 32.6 38 89-126 825-862 (1311)
21 PRK02224 chromosome segregatio 97.2 0.53 1.2E-05 55.0 31.3 49 89-137 345-393 (880)
22 KOG0964 Structural maintenance 97.2 0.5 1.1E-05 55.6 29.5 245 90-360 682-932 (1200)
23 KOG0964 Structural maintenance 97.2 0.33 7.1E-06 57.1 27.8 118 197-319 355-493 (1200)
24 PF00261 Tropomyosin: Tropomyo 97.1 0.3 6.5E-06 48.8 24.7 78 244-321 141-225 (237)
25 PRK11637 AmiB activator; Provi 97.1 0.57 1.2E-05 50.6 28.3 71 89-159 50-120 (428)
26 KOG0996 Structural maintenance 97.0 0.43 9.3E-06 57.1 27.3 59 263-321 533-591 (1293)
27 PF10174 Cast: RIM-binding pro 97.0 0.45 9.8E-06 55.4 27.0 235 112-357 327-589 (775)
28 KOG0933 Structural maintenance 96.8 0.77 1.7E-05 54.3 27.0 102 245-346 788-894 (1174)
29 KOG0161 Myosin class II heavy 96.7 2.8 6.1E-05 53.4 32.9 54 178-231 961-1022(1930)
30 PF00038 Filament: Intermediat 96.7 0.91 2E-05 46.5 30.1 43 89-131 50-92 (312)
31 PF12128 DUF3584: Protein of u 96.5 2.3 5E-05 52.0 30.2 72 87-158 601-672 (1201)
32 PRK01156 chromosome segregatio 96.5 2.5 5.3E-05 49.8 29.6 11 11-22 31-41 (895)
33 KOG0979 Structural maintenance 96.4 1.3 2.8E-05 52.5 25.5 227 77-325 115-357 (1072)
34 TIGR03185 DNA_S_dndD DNA sulfu 96.4 2.5 5.5E-05 48.2 32.7 10 72-81 144-153 (650)
35 PRK01156 chromosome segregatio 96.4 3 6.6E-05 49.0 32.8 27 90-116 473-499 (895)
36 KOG1029 Endocytic adaptor prot 96.3 0.54 1.2E-05 54.2 21.0 42 245-286 550-591 (1118)
37 KOG0250 DNA repair protein RAD 96.3 3.9 8.5E-05 49.0 29.6 303 55-375 611-957 (1074)
38 KOG4673 Transcription factor T 96.1 3.6 7.9E-05 47.2 27.2 27 348-374 601-627 (961)
39 KOG0977 Nuclear envelope prote 96.1 2.9 6.3E-05 47.0 25.3 38 99-136 41-78 (546)
40 PF12128 DUF3584: Protein of u 95.9 4.4 9.5E-05 49.7 28.2 95 203-305 783-881 (1201)
41 PF10174 Cast: RIM-binding pro 95.9 5.2 0.00011 47.0 30.4 17 176-192 233-249 (775)
42 PF05701 WEMBL: Weak chloropla 95.8 4.4 9.5E-05 45.3 26.9 25 89-113 133-157 (522)
43 KOG0996 Structural maintenance 95.6 7.7 0.00017 47.0 30.9 14 496-509 1138-1151(1293)
44 KOG0962 DNA repair protein RAD 95.6 2.7 5.9E-05 51.3 23.9 193 175-381 796-993 (1294)
45 KOG0977 Nuclear envelope prote 95.5 1.4 2.9E-05 49.6 19.7 80 265-352 296-375 (546)
46 PRK09039 hypothetical protein; 95.5 2.6 5.5E-05 44.8 21.0 63 243-305 122-184 (343)
47 KOG4674 Uncharacterized conser 95.1 9.7 0.00021 48.3 27.0 45 172-216 1186-1230(1822)
48 TIGR03185 DNA_S_dndD DNA sulfu 95.1 8.1 0.00018 44.1 29.4 50 89-138 205-254 (650)
49 KOG4673 Transcription factor T 95.0 8.8 0.00019 44.3 25.5 107 174-292 402-515 (961)
50 PF00261 Tropomyosin: Tropomyo 95.0 4.4 9.5E-05 40.6 22.0 63 246-308 171-233 (237)
51 KOG0250 DNA repair protein RAD 95.0 11 0.00025 45.3 32.4 45 329-381 457-501 (1074)
52 PF06160 EzrA: Septation ring 94.9 8.6 0.00019 43.4 27.3 103 245-347 352-461 (560)
53 PF07888 CALCOCO1: Calcium bin 94.7 9.6 0.00021 43.1 29.0 36 271-306 370-405 (546)
54 PRK04778 septation ring format 94.7 9.8 0.00021 43.0 31.3 92 244-335 376-478 (569)
55 KOG1029 Endocytic adaptor prot 94.6 12 0.00027 43.7 24.0 24 176-199 446-469 (1118)
56 COG1579 Zn-ribbon protein, pos 94.3 7 0.00015 39.8 23.7 55 246-300 91-145 (239)
57 KOG0933 Structural maintenance 94.3 16 0.00035 43.9 26.1 22 449-470 991-1012(1174)
58 PF05667 DUF812: Protein of un 94.3 13 0.00027 42.6 28.2 33 265-297 505-537 (594)
59 PF04849 HAP1_N: HAP1 N-termin 94.2 8.8 0.00019 40.4 23.3 78 243-320 226-303 (306)
60 PF12325 TMF_TATA_bd: TATA ele 94.1 1.5 3.3E-05 40.1 13.1 88 252-343 31-120 (120)
61 PF12252 SidE: Dot/Icm substra 94.0 13 0.00028 44.8 23.2 189 143-338 1125-1345(1439)
62 PF05667 DUF812: Protein of un 93.9 15 0.00032 42.1 25.5 23 183-205 410-432 (594)
63 PF10146 zf-C4H2: Zinc finger- 93.5 3.1 6.8E-05 42.0 15.4 90 213-307 6-95 (230)
64 PRK04863 mukB cell division pr 93.4 17 0.00038 45.7 24.4 23 89-111 226-248 (1486)
65 KOG0971 Microtubule-associated 93.1 24 0.00052 42.1 28.0 88 282-370 493-599 (1243)
66 COG4477 EzrA Negative regulato 93.1 16 0.00035 41.1 21.0 82 242-323 352-433 (570)
67 PF15070 GOLGA2L5: Putative go 92.9 21 0.00046 41.0 27.7 47 268-314 198-244 (617)
68 KOG0976 Rho/Rac1-interacting s 92.6 26 0.00057 41.3 27.6 41 267-307 325-365 (1265)
69 PF06160 EzrA: Septation ring 92.6 22 0.00047 40.2 30.4 96 89-191 78-178 (560)
70 PF09789 DUF2353: Uncharacteri 92.5 17 0.00036 38.6 22.3 15 327-341 273-287 (319)
71 KOG0979 Structural maintenance 92.4 8.6 0.00019 46.0 18.8 145 177-333 205-353 (1072)
72 KOG0946 ER-Golgi vesicle-tethe 92.2 24 0.00052 41.6 21.5 92 71-162 611-719 (970)
73 PF15070 GOLGA2L5: Putative go 92.2 27 0.00057 40.2 28.5 81 248-328 199-279 (617)
74 PF04111 APG6: Autophagy prote 92.1 1.5 3.3E-05 46.0 11.4 31 176-216 45-75 (314)
75 PF00038 Filament: Intermediat 92.1 16 0.00034 37.5 26.4 71 89-159 57-134 (312)
76 KOG4302 Microtubule-associated 92.0 4.4 9.6E-05 46.6 15.7 39 125-163 100-138 (660)
77 KOG4674 Uncharacterized conser 91.9 47 0.001 42.6 33.0 33 349-381 1489-1521(1822)
78 PF09726 Macoilin: Transmembra 91.9 13 0.00029 43.2 19.6 48 297-344 542-594 (697)
79 COG5185 HEC1 Protein involved 91.8 25 0.00054 39.2 26.0 45 173-217 461-506 (622)
80 PRK04863 mukB cell division pr 91.4 50 0.0011 41.9 33.8 147 172-323 433-619 (1486)
81 TIGR00634 recN DNA repair prot 91.4 29 0.00062 39.1 24.2 51 274-324 324-377 (563)
82 TIGR02680 conserved hypothetic 91.3 48 0.001 41.5 26.6 40 92-131 741-780 (1353)
83 KOG0018 Structural maintenance 91.2 42 0.00091 40.7 25.3 81 242-322 414-494 (1141)
84 PF07106 TBPIP: Tat binding pr 90.9 2.8 6.2E-05 39.6 11.0 7 340-346 155-161 (169)
85 PF09726 Macoilin: Transmembra 90.8 38 0.00083 39.5 26.2 78 112-207 430-507 (697)
86 PF13514 AAA_27: AAA domain 90.8 47 0.001 40.5 27.4 39 246-284 891-929 (1111)
87 TIGR02680 conserved hypothetic 90.3 59 0.0013 40.8 30.7 31 89-119 745-775 (1353)
88 TIGR01843 type_I_hlyD type I s 90.2 27 0.00058 36.7 24.1 21 87-107 75-95 (423)
89 PF14197 Cep57_CLD_2: Centroso 90.2 4.7 0.0001 33.4 10.2 64 249-312 3-66 (69)
90 PRK09039 hypothetical protein; 90.2 29 0.00062 37.0 22.6 51 91-141 44-94 (343)
91 PF03962 Mnd1: Mnd1 family; I 90.1 8 0.00017 37.8 13.5 65 245-310 63-127 (188)
92 PF10168 Nup88: Nuclear pore c 90.0 43 0.00093 39.2 21.4 48 93-140 543-591 (717)
93 PF08317 Spc7: Spc7 kinetochor 89.7 29 0.00063 36.4 20.3 56 245-300 210-265 (325)
94 smart00787 Spc7 Spc7 kinetocho 89.3 22 0.00047 37.5 16.9 56 252-307 205-260 (312)
95 KOG0946 ER-Golgi vesicle-tethe 89.3 53 0.0012 38.9 23.5 21 119-139 662-682 (970)
96 KOG0962 DNA repair protein RAD 89.1 69 0.0015 39.8 26.2 51 246-298 1017-1067(1294)
97 PF09304 Cortex-I_coil: Cortex 88.5 10 0.00023 34.1 11.7 74 245-318 17-90 (107)
98 PF09728 Taxilin: Myosin-like 88.2 37 0.0008 35.7 24.2 87 213-307 214-300 (309)
99 COG4942 Membrane-bound metallo 88.0 47 0.001 36.6 29.9 67 93-159 38-104 (420)
100 PF05701 WEMBL: Weak chloropla 88.0 51 0.0011 37.0 29.6 73 246-318 283-355 (522)
101 COG4026 Uncharacterized protei 87.9 7.5 0.00016 39.4 11.6 82 255-347 139-220 (290)
102 PRK10929 putative mechanosensi 87.8 51 0.0011 40.5 20.6 209 85-304 22-233 (1109)
103 KOG0963 Transcription factor/C 86.7 66 0.0014 37.0 20.2 162 90-286 193-358 (629)
104 PF07106 TBPIP: Tat binding pr 86.5 9 0.0002 36.2 11.1 23 277-299 114-136 (169)
105 PF08614 ATG16: Autophagy prot 86.5 7.9 0.00017 37.6 10.9 68 244-311 116-183 (194)
106 PF11932 DUF3450: Protein of u 86.3 36 0.00079 34.2 15.9 90 242-331 54-148 (251)
107 TIGR03007 pepcterm_ChnLen poly 86.1 57 0.0012 35.7 20.5 27 115-141 162-188 (498)
108 PF10473 CENP-F_leu_zip: Leuci 86.1 31 0.00066 32.5 18.2 83 258-345 52-134 (140)
109 smart00787 Spc7 Spc7 kinetocho 86.1 20 0.00042 37.9 14.2 30 129-158 205-234 (312)
110 PF08614 ATG16: Autophagy prot 85.2 7.6 0.00016 37.7 10.1 79 255-345 106-184 (194)
111 PF09730 BicD: Microtubule-ass 85.0 85 0.0019 36.9 19.7 113 128-272 583-696 (717)
112 PF10481 CENP-F_N: Cenp-F N-te 84.7 55 0.0012 34.2 16.5 107 202-310 15-126 (307)
113 PF08317 Spc7: Spc7 kinetochor 84.5 57 0.0012 34.3 22.0 58 250-307 208-265 (325)
114 PF09728 Taxilin: Myosin-like 84.4 58 0.0013 34.3 30.6 72 245-316 203-274 (309)
115 PF13166 AAA_13: AAA domain 84.3 83 0.0018 36.0 25.2 12 86-97 265-276 (712)
116 PRK11281 hypothetical protein; 84.2 1.2E+02 0.0025 37.6 21.3 110 86-200 36-147 (1113)
117 COG4026 Uncharacterized protei 83.9 13 0.00029 37.6 11.1 65 243-307 141-205 (290)
118 PF05622 HOOK: HOOK protein; 83.9 0.33 7.1E-06 55.9 0.0 61 245-305 364-424 (713)
119 KOG1962 B-cell receptor-associ 83.8 14 0.0003 37.1 11.3 60 245-304 152-211 (216)
120 PF09789 DUF2353: Uncharacteri 83.6 50 0.0011 35.1 15.8 43 267-309 135-177 (319)
121 PF10146 zf-C4H2: Zinc finger- 83.4 28 0.00061 35.2 13.5 61 247-307 42-102 (230)
122 PF02403 Seryl_tRNA_N: Seryl-t 83.4 7 0.00015 34.1 8.2 55 249-303 41-98 (108)
123 PF15619 Lebercilin: Ciliary p 83.3 49 0.0011 32.6 24.2 20 143-162 62-81 (194)
124 PF12718 Tropomyosin_1: Tropom 83.2 40 0.00087 31.5 17.2 37 119-155 5-41 (143)
125 KOG0612 Rho-associated, coiled 83.0 1.3E+02 0.0029 37.3 30.1 15 175-189 537-551 (1317)
126 PF13870 DUF4201: Domain of un 82.7 45 0.00097 31.7 15.9 59 246-304 79-137 (177)
127 PF12325 TMF_TATA_bd: TATA ele 82.6 15 0.00033 33.6 10.2 71 92-162 29-109 (120)
128 COG4942 Membrane-bound metallo 81.6 90 0.002 34.4 29.9 121 89-218 41-174 (420)
129 PF03999 MAP65_ASE1: Microtubu 81.5 0.45 9.7E-06 54.0 -0.1 67 244-310 228-303 (619)
130 PF02403 Seryl_tRNA_N: Seryl-t 81.1 15 0.00032 32.1 9.3 62 201-277 39-100 (108)
131 PF05384 DegS: Sensor protein 80.5 55 0.0012 31.4 13.6 83 243-325 26-130 (159)
132 PF04728 LPP: Lipoprotein leuc 80.4 15 0.00033 29.5 8.2 46 252-297 4-49 (56)
133 PF09730 BicD: Microtubule-ass 80.4 1.3E+02 0.0028 35.5 23.5 61 247-307 394-454 (717)
134 PF10234 Cluap1: Clusterin-ass 79.6 34 0.00073 35.5 12.6 61 246-306 199-259 (267)
135 PF13851 GAS: Growth-arrest sp 79.5 67 0.0015 31.7 15.9 45 270-314 91-135 (201)
136 PF12718 Tropomyosin_1: Tropom 79.2 56 0.0012 30.6 18.1 15 175-189 74-88 (143)
137 COG0419 SbcC ATPase involved i 79.1 1.5E+02 0.0032 35.5 32.4 40 176-216 602-641 (908)
138 PF06005 DUF904: Protein of un 78.5 38 0.00083 28.3 11.0 36 266-301 33-68 (72)
139 PF10186 Atg14: UV radiation r 78.4 63 0.0014 32.4 14.2 45 273-317 64-108 (302)
140 PRK10884 SH3 domain-containing 77.9 20 0.00044 35.6 10.2 33 271-303 131-163 (206)
141 PF04645 DUF603: Protein of un 77.8 16 0.00035 35.6 9.0 71 243-326 104-179 (181)
142 COG5185 HEC1 Protein involved 77.7 1.3E+02 0.0028 33.9 23.2 46 117-162 305-357 (622)
143 KOG3647 Predicted coiled-coil 77.3 99 0.0021 32.4 15.6 61 245-305 141-201 (338)
144 PRK15422 septal ring assembly 77.2 15 0.00033 31.4 7.7 55 95-149 20-74 (79)
145 TIGR01005 eps_transp_fam exopo 76.9 1.5E+02 0.0033 34.4 22.6 31 128-158 237-267 (754)
146 PF13870 DUF4201: Domain of un 76.8 70 0.0015 30.4 18.8 112 245-356 43-168 (177)
147 PF01920 Prefoldin_2: Prefoldi 75.8 19 0.00041 30.7 8.3 37 126-162 3-39 (106)
148 TIGR01000 bacteriocin_acc bact 75.4 1.3E+02 0.0028 32.9 24.8 29 86-114 90-118 (457)
149 TIGR01000 bacteriocin_acc bact 75.3 1.3E+02 0.0028 32.9 22.5 24 89-112 100-123 (457)
150 KOG0994 Extracellular matrix g 75.3 1.8E+02 0.0039 36.2 18.2 38 315-352 1319-1356(1758)
151 PF14197 Cep57_CLD_2: Centroso 75.2 46 0.00099 27.6 9.9 46 260-305 7-52 (69)
152 PRK10884 SH3 domain-containing 74.9 19 0.0004 35.9 9.0 9 30-38 39-47 (206)
153 PF10234 Cluap1: Clusterin-ass 74.8 1.1E+02 0.0024 31.8 16.7 13 331-343 234-246 (267)
154 PF15035 Rootletin: Ciliary ro 74.7 86 0.0019 30.6 13.4 83 270-369 86-168 (182)
155 KOG4603 TBP-1 interacting prot 74.6 75 0.0016 31.2 12.6 7 340-346 162-168 (201)
156 KOG0994 Extracellular matrix g 74.6 2.3E+02 0.005 35.3 28.5 53 270-322 1596-1648(1758)
157 PF04111 APG6: Autophagy prote 74.3 51 0.0011 34.7 12.6 56 245-300 51-106 (314)
158 PF04782 DUF632: Protein of un 74.3 1.2E+02 0.0027 32.1 20.9 154 197-369 91-255 (312)
159 KOG2751 Beclin-like protein [S 74.1 1.5E+02 0.0032 32.9 21.5 93 175-302 177-269 (447)
160 PF06818 Fez1: Fez1; InterPro 73.9 1E+02 0.0022 30.9 15.4 41 281-321 133-173 (202)
161 PF12329 TMF_DNA_bd: TATA elem 73.7 28 0.00062 29.1 8.5 58 245-302 13-70 (74)
162 COG3883 Uncharacterized protei 73.0 1.2E+02 0.0027 31.5 25.6 64 95-158 33-96 (265)
163 PF05278 PEARLI-4: Arabidopsis 72.9 1.2E+02 0.0027 31.5 15.8 114 175-304 147-260 (269)
164 PF13949 ALIX_LYPXL_bnd: ALIX 72.2 1.2E+02 0.0025 30.8 29.3 41 278-318 240-280 (296)
165 KOG4643 Uncharacterized coiled 71.8 2.5E+02 0.0054 34.5 24.9 52 89-140 173-224 (1195)
166 KOG0018 Structural maintenance 71.6 2.5E+02 0.0055 34.5 26.3 70 86-159 649-721 (1141)
167 PRK10869 recombination and rep 71.3 1.9E+02 0.0041 32.8 23.9 66 118-188 154-219 (553)
168 PF14942 Muted: Organelle biog 71.1 95 0.0021 29.4 14.2 21 199-219 31-51 (145)
169 PF06005 DUF904: Protein of un 71.0 61 0.0013 27.1 10.6 47 256-302 9-55 (72)
170 KOG0999 Microtubule-associated 70.3 2.1E+02 0.0045 33.0 29.8 26 471-496 357-382 (772)
171 PF04728 LPP: Lipoprotein leuc 69.4 49 0.0011 26.6 8.5 44 246-289 5-48 (56)
172 PF12329 TMF_DNA_bd: TATA elem 69.4 41 0.0009 28.1 8.6 29 255-283 30-58 (74)
173 PF04156 IncA: IncA protein; 69.4 1.1E+02 0.0023 29.2 14.1 55 245-299 96-150 (191)
174 cd00179 SynN Syntaxin N-termin 69.1 90 0.002 28.3 12.3 46 330-380 85-130 (151)
175 PF05531 NPV_P10: Nucleopolyhe 69.0 26 0.00057 29.7 7.2 49 255-303 8-59 (75)
176 TIGR02894 DNA_bind_RsfA transc 68.9 1.1E+02 0.0024 29.6 12.3 54 270-323 102-155 (161)
177 KOG4809 Rab6 GTPase-interactin 68.5 2.2E+02 0.0048 32.6 23.5 30 129-158 251-280 (654)
178 TIGR03007 pepcterm_ChnLen poly 68.5 1.9E+02 0.0041 31.7 19.0 64 89-158 171-234 (498)
179 PF02183 HALZ: Homeobox associ 67.3 21 0.00046 27.2 5.8 38 263-300 3-40 (45)
180 PF01576 Myosin_tail_1: Myosin 66.1 1.9 4.2E-05 50.9 0.0 28 244-271 356-383 (859)
181 COG0419 SbcC ATPase involved i 65.5 3E+02 0.0065 33.0 33.6 23 277-299 693-715 (908)
182 KOG4302 Microtubule-associated 65.3 2.8E+02 0.006 32.5 24.2 62 246-307 249-326 (660)
183 PF12795 MscS_porin: Mechanose 64.8 1.6E+02 0.0034 29.5 21.6 76 131-207 34-111 (240)
184 PF05377 FlaC_arch: Flagella a 64.6 24 0.00053 28.2 5.9 35 261-295 3-37 (55)
185 PF06818 Fez1: Fez1; InterPro 64.5 1.4E+02 0.003 29.9 12.4 94 206-317 11-104 (202)
186 KOG4643 Uncharacterized coiled 64.3 3.5E+02 0.0075 33.3 28.2 58 247-304 477-534 (1195)
187 COG2433 Uncharacterized conser 63.8 79 0.0017 36.4 11.8 75 244-329 443-520 (652)
188 COG3074 Uncharacterized protei 63.7 46 0.00099 28.1 7.5 50 95-144 20-69 (79)
189 TIGR02338 gimC_beta prefoldin, 63.2 37 0.00081 30.0 7.6 74 198-284 34-107 (110)
190 PF01576 Myosin_tail_1: Myosin 62.8 2.4 5.3E-05 50.1 0.0 51 268-318 549-599 (859)
191 KOG0804 Cytoplasmic Zn-finger 62.4 2.6E+02 0.0057 31.3 15.5 96 246-353 363-458 (493)
192 PF15619 Lebercilin: Ciliary p 61.2 1.7E+02 0.0038 28.8 22.4 38 273-310 119-156 (194)
193 PF06103 DUF948: Bacterial pro 61.0 78 0.0017 26.7 8.9 59 248-306 30-88 (90)
194 PF12729 4HB_MCP_1: Four helix 60.9 1.2E+02 0.0026 26.8 11.3 42 299-340 108-149 (181)
195 PF10168 Nup88: Nuclear pore c 60.6 3.4E+02 0.0074 32.0 18.9 38 177-215 610-649 (717)
196 PF10498 IFT57: Intra-flagella 60.4 2.5E+02 0.0054 30.4 14.7 54 263-316 264-317 (359)
197 COG3883 Uncharacterized protei 60.3 2.2E+02 0.0047 29.7 24.4 66 94-159 39-104 (265)
198 KOG1962 B-cell receptor-associ 59.9 96 0.0021 31.3 10.5 61 264-324 150-210 (216)
199 PRK09973 putative outer membra 59.7 91 0.002 27.1 9.0 45 252-296 25-69 (85)
200 PF15290 Syntaphilin: Golgi-lo 59.6 1.7E+02 0.0037 30.8 12.5 50 148-218 88-137 (305)
201 PRK10869 recombination and rep 59.6 3.1E+02 0.0067 31.1 24.5 39 327-365 342-380 (553)
202 PF04949 Transcrip_act: Transc 59.5 1.7E+02 0.0037 28.1 11.4 59 242-300 82-140 (159)
203 PF09787 Golgin_A5: Golgin sub 58.2 3.1E+02 0.0067 30.7 25.0 29 246-274 276-304 (511)
204 PF05622 HOOK: HOOK protein; 58.1 3.3 7.2E-05 47.8 0.0 32 130-161 393-424 (713)
205 COG3352 FlaC Putative archaeal 58.0 1.4E+02 0.003 28.7 10.6 37 244-280 65-101 (157)
206 KOG0978 E3 ubiquitin ligase in 57.9 3.8E+02 0.0082 31.7 23.1 187 89-307 436-622 (698)
207 PRK05431 seryl-tRNA synthetase 57.7 49 0.0011 36.2 8.9 28 276-303 70-97 (425)
208 PF15233 SYCE1: Synaptonemal c 57.7 1.7E+02 0.0036 27.5 11.1 123 92-217 5-131 (134)
209 COG4372 Uncharacterized protei 57.6 3E+02 0.0065 30.4 28.6 76 244-319 217-292 (499)
210 PF11932 DUF3450: Protein of u 56.6 2.2E+02 0.0048 28.6 14.8 25 175-199 125-149 (251)
211 smart00030 CLb CLUSTERIN Beta 56.5 2.2E+02 0.0048 28.5 12.5 38 326-374 71-108 (206)
212 cd07653 F-BAR_CIP4-like The F- 56.5 2.1E+02 0.0046 28.3 19.9 24 351-374 193-216 (251)
213 PLN02678 seryl-tRNA synthetase 56.3 92 0.002 34.6 10.7 18 201-218 43-60 (448)
214 KOG4809 Rab6 GTPase-interactin 56.2 2.7E+02 0.0058 32.0 14.0 22 175-196 265-286 (654)
215 PF05529 Bap31: B-cell recepto 56.1 60 0.0013 31.3 8.3 37 273-309 155-191 (192)
216 PF03962 Mnd1: Mnd1 family; I 55.8 1.2E+02 0.0026 29.7 10.3 67 79-145 55-127 (188)
217 PF11559 ADIP: Afadin- and alp 55.7 1.7E+02 0.0037 27.0 13.2 54 249-302 64-117 (151)
218 PF08826 DMPK_coil: DMPK coile 55.5 1.1E+02 0.0025 24.9 8.4 38 246-283 20-57 (61)
219 KOG0612 Rho-associated, coiled 54.8 5.3E+02 0.012 32.4 29.0 16 338-353 701-716 (1317)
220 COG4477 EzrA Negative regulato 54.7 3.8E+02 0.0082 30.7 24.6 7 76-82 95-101 (570)
221 PF05557 MAD: Mitotic checkpoi 54.7 1.5E+02 0.0033 34.5 12.7 21 243-263 565-585 (722)
222 TIGR00020 prfB peptide chain r 54.0 2.5E+02 0.0055 30.4 13.2 97 246-343 2-105 (364)
223 PF07889 DUF1664: Protein of u 53.8 1.9E+02 0.0041 26.9 11.4 53 245-297 69-121 (126)
224 PF05546 She9_MDM33: She9 / Md 53.5 1.1E+02 0.0024 30.7 9.7 84 261-349 5-101 (207)
225 PF15290 Syntaphilin: Golgi-lo 53.4 97 0.0021 32.5 9.5 73 81-162 51-137 (305)
226 TIGR02894 DNA_bind_RsfA transc 53.3 1.3E+02 0.0028 29.2 9.7 48 245-292 105-152 (161)
227 PF13166 AAA_13: AAA domain 53.3 4E+02 0.0087 30.5 22.0 18 83-100 258-276 (712)
228 PRK15396 murein lipoprotein; P 53.0 87 0.0019 26.8 7.7 45 253-297 27-71 (78)
229 KOG0971 Microtubule-associated 52.5 5.2E+02 0.011 31.6 33.7 35 324-358 502-536 (1243)
230 PF03993 DUF349: Domain of Unk 52.4 1.2E+02 0.0026 24.3 9.1 57 288-348 11-68 (77)
231 PF11559 ADIP: Afadin- and alp 52.1 2E+02 0.0042 26.6 12.6 16 201-216 34-49 (151)
232 KOG2264 Exostosin EXT1L [Signa 51.7 1.1E+02 0.0024 35.1 10.3 58 245-302 94-151 (907)
233 TIGR00020 prfB peptide chain r 51.7 2.6E+02 0.0056 30.4 12.9 61 149-218 7-69 (364)
234 PF14662 CCDC155: Coiled-coil 51.6 2.6E+02 0.0056 27.9 23.1 61 258-318 88-148 (193)
235 KOG0239 Kinesin (KAR3 subfamil 51.4 4.7E+02 0.01 30.7 16.8 16 199-214 176-191 (670)
236 TIGR03545 conserved hypothetic 51.3 4.3E+02 0.0093 30.3 15.5 24 297-320 289-312 (555)
237 PF12958 DUF3847: Protein of u 51.1 1.7E+02 0.0036 25.5 9.8 28 329-356 58-85 (86)
238 PF06810 Phage_GP20: Phage min 50.9 2E+02 0.0044 27.3 10.7 12 369-381 113-124 (155)
239 PF10805 DUF2730: Protein of u 50.9 1.2E+02 0.0026 26.9 8.7 62 243-304 34-97 (106)
240 PHA03011 hypothetical protein; 50.8 1.2E+02 0.0026 27.3 8.5 59 243-308 56-114 (120)
241 KOG0995 Centromere-associated 50.3 4.5E+02 0.0098 30.3 26.6 22 140-161 299-320 (581)
242 PHA03395 p10 fibrous body prot 50.1 99 0.0021 27.1 7.6 23 256-278 9-31 (87)
243 TIGR03017 EpsF chain length de 50.1 3.6E+02 0.0077 29.0 21.5 16 81-97 136-151 (444)
244 PRK11546 zraP zinc resistance 50.0 62 0.0014 30.6 7.0 15 263-277 66-80 (143)
245 PF08172 CASP_C: CASP C termin 49.6 82 0.0018 32.2 8.4 54 246-299 81-134 (248)
246 TIGR03752 conj_TIGR03752 integ 49.5 1.6E+02 0.0035 33.0 11.1 8 282-289 97-104 (472)
247 PLN02320 seryl-tRNA synthetase 49.4 77 0.0017 35.7 8.8 7 249-255 112-118 (502)
248 TIGR00634 recN DNA repair prot 49.3 4.4E+02 0.0095 29.8 25.2 42 120-161 160-201 (563)
249 PRK00578 prfB peptide chain re 48.9 3.4E+02 0.0074 29.5 13.3 98 248-346 4-108 (367)
250 TIGR00414 serS seryl-tRNA synt 48.6 1.1E+02 0.0024 33.4 9.7 26 276-301 73-98 (418)
251 PF06657 Cep57_MT_bd: Centroso 48.2 1.7E+02 0.0036 24.9 8.7 59 255-313 14-77 (79)
252 KOG0995 Centromere-associated 47.9 4.9E+02 0.011 30.0 31.6 40 178-217 312-351 (581)
253 cd07665 BAR_SNX1 The Bin/Amphi 47.1 3.3E+02 0.0071 27.7 20.9 163 178-354 26-206 (234)
254 PF09304 Cortex-I_coil: Cortex 47.0 2.2E+02 0.0048 25.8 12.1 44 247-290 33-76 (107)
255 KOG0239 Kinesin (KAR3 subfamil 46.8 5.4E+02 0.012 30.2 19.6 25 116-140 130-154 (670)
256 PF06705 SF-assemblin: SF-asse 46.3 3.2E+02 0.007 27.4 23.5 25 270-294 202-226 (247)
257 COG2433 Uncharacterized conser 46.2 62 0.0013 37.2 7.4 75 124-206 425-499 (652)
258 TIGR01843 type_I_hlyD type I s 46.1 3.8E+02 0.0081 28.1 21.7 18 89-106 84-101 (423)
259 COG3074 Uncharacterized protei 46.1 1.8E+02 0.004 24.6 10.5 43 258-300 11-53 (79)
260 PRK10929 putative mechanosensi 45.8 7E+02 0.015 31.2 28.5 20 174-193 144-163 (1109)
261 PF07200 Mod_r: Modifier of ru 45.8 2.4E+02 0.0053 25.9 14.4 19 339-360 126-144 (150)
262 PRK14160 heat shock protein Gr 45.6 2.6E+02 0.0057 28.1 11.0 49 274-322 56-104 (211)
263 KOG2150 CCR4-NOT transcription 45.0 3.5E+02 0.0075 31.1 12.9 18 202-219 46-63 (575)
264 PF15397 DUF4618: Domain of un 45.0 3.8E+02 0.0082 27.9 17.1 118 242-360 79-209 (258)
265 PF07926 TPR_MLP1_2: TPR/MLP1/ 44.6 2.5E+02 0.0054 25.6 15.5 8 129-136 11-18 (132)
266 PF15254 CCDC14: Coiled-coil d 44.6 3.5E+02 0.0076 32.3 13.1 14 357-370 544-557 (861)
267 PF04949 Transcrip_act: Transc 44.5 3E+02 0.0065 26.5 13.6 40 278-317 83-122 (159)
268 PRK02119 hypothetical protein; 44.4 1.9E+02 0.0041 24.2 8.4 52 247-298 5-56 (73)
269 PF15456 Uds1: Up-regulated Du 44.3 2.6E+02 0.0056 25.8 10.8 77 244-321 22-109 (124)
270 PF04136 Sec34: Sec34-like fam 44.3 2.8E+02 0.0062 26.2 13.8 108 246-354 9-119 (157)
271 PF03961 DUF342: Protein of un 44.2 1.6E+02 0.0035 32.2 10.3 31 247-277 330-360 (451)
272 PRK04406 hypothetical protein; 43.5 2E+02 0.0043 24.2 8.4 49 249-297 9-57 (75)
273 PRK05431 seryl-tRNA synthetase 43.3 85 0.0018 34.4 7.9 13 204-216 27-39 (425)
274 PF07795 DUF1635: Protein of u 43.1 1.4E+02 0.003 30.1 8.6 35 265-299 26-60 (214)
275 KOG2264 Exostosin EXT1L [Signa 42.6 1.3E+02 0.0028 34.7 9.0 66 102-167 81-153 (907)
276 cd07664 BAR_SNX2 The Bin/Amphi 42.3 3.8E+02 0.0083 27.1 20.9 151 177-343 25-197 (234)
277 PRK00578 prfB peptide chain re 42.0 4.6E+02 0.01 28.5 13.0 59 150-217 8-68 (367)
278 PF10392 COG5: Golgi transport 41.3 2.8E+02 0.0061 25.3 11.0 48 260-307 67-114 (132)
279 PRK09343 prefoldin subunit bet 41.3 2.7E+02 0.0059 25.2 10.3 11 205-215 85-95 (121)
280 KOG0999 Microtubule-associated 40.8 6.4E+02 0.014 29.3 24.4 45 120-164 99-143 (772)
281 PF06810 Phage_GP20: Phage min 40.6 2.7E+02 0.0059 26.4 9.9 18 363-380 100-117 (155)
282 PF08647 BRE1: BRE1 E3 ubiquit 40.2 2.5E+02 0.0054 24.4 11.9 26 291-316 50-75 (96)
283 TIGR00414 serS seryl-tRNA synt 40.1 1.6E+02 0.0034 32.2 9.3 56 97-152 41-100 (418)
284 PLN02939 transferase, transfer 39.8 8.1E+02 0.018 30.2 26.4 51 89-139 131-181 (977)
285 PF09738 DUF2051: Double stran 39.6 3.6E+02 0.0079 28.5 11.5 50 253-302 114-163 (302)
286 PLN02678 seryl-tRNA synthetase 39.5 1.3E+02 0.0029 33.4 8.7 62 97-158 44-108 (448)
287 PF10498 IFT57: Intra-flagella 39.2 5.3E+02 0.011 27.9 13.8 56 104-159 242-297 (359)
288 PF05529 Bap31: B-cell recepto 38.8 1.7E+02 0.0037 28.1 8.4 31 249-279 159-189 (192)
289 TIGR03545 conserved hypothetic 38.3 6.7E+02 0.014 28.8 15.2 35 269-303 216-250 (555)
290 PF04102 SlyX: SlyX; InterPro 38.2 1.9E+02 0.0042 23.6 7.4 47 253-299 6-52 (69)
291 KOG0976 Rho/Rac1-interacting s 38.2 8.2E+02 0.018 29.8 28.6 38 181-218 214-252 (1265)
292 PRK03947 prefoldin subunit alp 38.1 3.1E+02 0.0068 24.9 12.0 105 120-280 5-137 (140)
293 PF05384 DegS: Sensor protein 37.6 3.8E+02 0.0082 25.8 17.5 108 100-213 6-113 (159)
294 KOG0980 Actin-binding protein 37.2 8.5E+02 0.018 29.7 19.8 23 326-348 515-537 (980)
295 TIGR02338 gimC_beta prefoldin, 37.1 2.9E+02 0.0064 24.3 11.0 20 246-265 83-102 (110)
296 PF06632 XRCC4: DNA double-str 36.8 4.6E+02 0.0099 28.2 11.9 86 77-162 110-207 (342)
297 PHA01750 hypothetical protein 36.2 2E+02 0.0043 24.1 7.0 26 275-300 45-70 (75)
298 KOG0980 Actin-binding protein 35.9 8.9E+02 0.019 29.6 28.6 53 107-159 344-396 (980)
299 PRK10698 phage shock protein P 35.8 4.6E+02 0.01 26.2 15.2 15 178-192 28-42 (222)
300 PF12711 Kinesin-relat_1: Kine 35.8 3E+02 0.0065 24.0 9.0 36 180-215 2-41 (86)
301 PF03961 DUF342: Protein of un 35.6 2.6E+02 0.0057 30.6 10.2 77 85-161 326-408 (451)
302 TIGR02449 conserved hypothetic 35.5 2.6E+02 0.0056 23.2 8.8 47 90-136 4-50 (65)
303 PRK11546 zraP zinc resistance 35.4 2.1E+02 0.0046 27.1 8.1 44 118-161 65-108 (143)
304 PF10481 CENP-F_N: Cenp-F N-te 35.3 5.6E+02 0.012 27.1 17.3 64 197-271 65-129 (307)
305 KOG4571 Activating transcripti 35.1 4.8E+02 0.01 27.6 11.3 44 117-160 244-287 (294)
306 COG4913 Uncharacterized protei 34.7 3.3E+02 0.0071 32.6 10.8 101 244-346 616-725 (1104)
307 TIGR01554 major_cap_HK97 phage 34.7 2.2E+02 0.0047 30.2 9.2 16 249-264 4-19 (378)
308 COG5420 Uncharacterized conser 34.6 2.2E+02 0.0047 23.7 6.9 60 246-305 8-67 (71)
309 cd00890 Prefoldin Prefoldin is 34.5 3.2E+02 0.0069 24.0 10.5 6 154-159 35-40 (129)
310 PF09738 DUF2051: Double stran 34.3 4.4E+02 0.0096 27.9 11.1 52 267-318 100-151 (302)
311 PF02344 Myc-LZ: Myc leucine z 34.3 66 0.0014 23.1 3.4 21 198-218 1-21 (32)
312 PF12777 MT: Microtubule-bindi 34.1 4E+02 0.0087 28.2 11.0 9 349-357 328-336 (344)
313 KOG0288 WD40 repeat protein Ti 34.0 6.5E+02 0.014 28.1 12.4 11 366-376 141-151 (459)
314 PF06717 DUF1202: Protein of u 33.9 1.4E+02 0.003 31.5 7.2 14 346-359 207-220 (308)
315 PRK15396 murein lipoprotein; P 33.8 2E+02 0.0043 24.6 6.9 47 245-291 26-72 (78)
316 PF05082 Rop-like: Rop-like; 33.8 1.4E+02 0.003 24.9 5.8 60 246-305 4-63 (66)
317 TIGR02231 conserved hypothetic 33.7 3.3E+02 0.0072 30.3 10.8 32 272-303 138-169 (525)
318 PF06156 DUF972: Protein of un 33.6 2.8E+02 0.0061 24.9 8.3 44 255-298 12-55 (107)
319 PHA03011 hypothetical protein; 33.4 3.6E+02 0.0077 24.4 8.6 15 307-321 99-113 (120)
320 PF14712 Snapin_Pallidin: Snap 33.3 2.9E+02 0.0064 23.2 10.9 23 291-313 62-84 (92)
321 PF14282 FlxA: FlxA-like prote 33.2 2.2E+02 0.0048 25.2 7.6 21 245-265 20-40 (106)
322 PF10205 KLRAQ: Predicted coil 33.2 3.6E+02 0.0079 24.3 9.0 58 247-304 15-72 (102)
323 PF10147 CR6_interact: Growth 33.1 1.8E+02 0.0039 29.4 7.7 8 37-44 64-71 (217)
324 PF07862 Nif11: Nitrogen fixat 33.0 43 0.00093 25.3 2.6 44 336-379 3-46 (49)
325 PF15188 CCDC-167: Coiled-coil 32.8 2.5E+02 0.0054 24.5 7.5 28 273-300 37-64 (85)
326 PF12252 SidE: Dot/Icm substra 32.7 1.1E+03 0.024 29.6 24.4 58 308-373 1238-1296(1439)
327 PF10473 CENP-F_leu_zip: Leuci 32.2 4.4E+02 0.0095 24.9 16.6 58 245-302 53-110 (140)
328 PRK10636 putative ABC transpor 32.2 1.6E+02 0.0034 33.8 8.1 30 274-303 600-629 (638)
329 PF06148 COG2: COG (conserved 31.9 54 0.0012 29.8 3.5 32 242-273 60-91 (133)
330 KOG4360 Uncharacterized coiled 31.8 8.4E+02 0.018 28.0 13.2 89 251-344 205-293 (596)
331 PF13600 DUF4140: N-terminal d 31.7 1.8E+02 0.0039 25.0 6.7 48 74-121 49-98 (104)
332 PRK14161 heat shock protein Gr 31.7 4E+02 0.0087 26.0 9.7 27 295-321 35-61 (178)
333 PF07200 Mod_r: Modifier of ru 31.6 4.1E+02 0.0089 24.3 13.3 115 247-367 30-144 (150)
334 PRK09239 chorismate mutase; Pr 31.6 3.7E+02 0.008 23.9 9.4 37 266-302 11-47 (104)
335 TIGR02231 conserved hypothetic 31.6 4.5E+02 0.0098 29.3 11.4 40 277-316 129-168 (525)
336 PF03993 DUF349: Domain of Unk 31.6 2.7E+02 0.0059 22.3 8.5 63 90-157 2-65 (77)
337 PLN02320 seryl-tRNA synthetase 31.4 2.3E+02 0.005 32.1 8.9 29 104-132 97-125 (502)
338 PF12777 MT: Microtubule-bindi 31.2 2.3E+02 0.0049 30.0 8.6 16 91-106 20-35 (344)
339 PF03904 DUF334: Domain of unk 31.1 5.9E+02 0.013 26.1 13.3 14 206-219 44-57 (230)
340 PF03999 MAP65_ASE1: Microtubu 31.1 37 0.0008 38.8 2.9 21 364-384 403-423 (619)
341 PF06717 DUF1202: Protein of u 31.0 1.5E+02 0.0032 31.3 6.8 39 245-283 139-177 (308)
342 COG0598 CorA Mg2+ and Co2+ tra 30.9 6.3E+02 0.014 26.3 13.6 39 175-218 155-193 (322)
343 PF06009 Laminin_II: Laminin D 30.7 17 0.00036 33.6 0.0 55 273-327 53-110 (138)
344 KOG0972 Huntingtin interacting 30.5 7E+02 0.015 26.7 13.0 69 99-167 226-298 (384)
345 PF06698 DUF1192: Protein of u 30.5 86 0.0019 25.5 4.0 29 171-216 18-46 (59)
346 PF06705 SF-assemblin: SF-asse 30.4 5.7E+02 0.012 25.6 24.4 17 178-194 38-54 (247)
347 cd00890 Prefoldin Prefoldin is 30.4 3.7E+02 0.0081 23.5 10.4 6 183-188 8-13 (129)
348 cd07657 F-BAR_Fes_Fer The F-BA 30.3 5.9E+02 0.013 25.7 16.5 85 201-295 68-156 (237)
349 PF05103 DivIVA: DivIVA protei 30.3 35 0.00076 30.3 2.0 18 339-356 113-130 (131)
350 PRK02793 phi X174 lysis protei 30.0 3.2E+02 0.007 22.7 8.0 48 251-298 8-55 (72)
351 KOG0709 CREB/ATF family transc 30.0 1.5E+02 0.0033 33.1 7.1 54 96-151 243-298 (472)
352 PF05008 V-SNARE: Vesicle tran 29.7 3.1E+02 0.0067 22.3 7.6 55 87-141 19-74 (79)
353 PF13851 GAS: Growth-arrest sp 29.7 5.6E+02 0.012 25.3 22.0 77 127-218 47-127 (201)
354 PF14662 CCDC155: Coiled-coil 29.6 5.8E+02 0.013 25.5 23.1 21 138-158 39-59 (193)
355 PF09755 DUF2046: Uncharacteri 29.6 7.2E+02 0.016 26.6 22.6 81 202-300 81-163 (310)
356 PRK04406 hypothetical protein; 29.2 3.5E+02 0.0075 22.8 8.7 51 253-303 6-56 (75)
357 PF07851 TMPIT: TMPIT-like pro 29.1 3.8E+02 0.0083 28.8 9.7 49 114-162 11-59 (330)
358 KOG4460 Nuclear pore complex, 29.0 9.7E+02 0.021 27.9 13.1 60 177-264 584-643 (741)
359 KOG3809 Microtubule-binding pr 29.0 6.9E+02 0.015 28.2 11.6 79 245-323 480-569 (583)
360 PF15450 DUF4631: Domain of un 28.8 9.3E+02 0.02 27.6 25.3 227 89-325 228-466 (531)
361 PF08826 DMPK_coil: DMPK coile 28.8 3.2E+02 0.007 22.3 9.2 47 109-155 13-59 (61)
362 PRK09973 putative outer membra 28.7 2.4E+02 0.0053 24.6 6.7 45 245-289 25-69 (85)
363 KOG3091 Nuclear pore complex, 28.6 9.2E+02 0.02 27.5 14.8 67 125-215 338-404 (508)
364 PF01519 DUF16: Protein of unk 28.6 4.4E+02 0.0096 23.8 10.4 61 245-305 38-100 (102)
365 PRK00295 hypothetical protein; 28.5 3.3E+02 0.0072 22.3 8.1 46 253-298 7-52 (68)
366 KOG3647 Predicted coiled-coil 28.5 7.3E+02 0.016 26.3 16.5 78 260-345 114-191 (338)
367 KOG0244 Kinesin-like protein [ 28.4 6.3E+02 0.014 30.8 12.1 52 91-144 335-386 (913)
368 PF04420 CHD5: CHD5-like prote 28.3 1.3E+02 0.0029 28.5 5.7 14 249-262 45-58 (161)
369 PF06008 Laminin_I: Laminin Do 28.1 6.4E+02 0.014 25.5 25.0 23 91-113 43-65 (264)
370 PF04859 DUF641: Plant protein 28.0 2E+02 0.0044 26.8 6.6 49 242-290 78-126 (131)
371 PRK02195 V-type ATP synthase s 28.0 4E+02 0.0087 26.3 9.1 36 275-310 27-62 (201)
372 PF03148 Tektin: Tektin family 27.9 8E+02 0.017 26.5 25.2 29 89-117 60-88 (384)
373 cd07623 BAR_SNX1_2 The Bin/Amp 27.6 6.1E+02 0.013 25.1 21.0 163 178-354 16-196 (224)
374 smart00502 BBC B-Box C-termina 27.6 3.9E+02 0.0084 22.8 15.0 29 298-326 77-105 (127)
375 TIGR01005 eps_transp_fam exopo 27.3 1E+03 0.023 27.7 27.7 56 87-142 164-222 (754)
376 KOG2072 Translation initiation 27.2 1.2E+03 0.026 28.4 22.9 96 260-369 672-768 (988)
377 PF02050 FliJ: Flagellar FliJ 27.1 3.7E+02 0.0081 22.4 12.2 19 289-307 62-80 (123)
378 PRK14148 heat shock protein Gr 27.0 4.6E+02 0.01 26.0 9.3 28 292-319 53-80 (195)
379 PRK04325 hypothetical protein; 26.9 3.8E+02 0.0081 22.4 8.3 46 252-297 10-55 (74)
380 PF14282 FlxA: FlxA-like prote 26.8 4.3E+02 0.0093 23.4 8.3 20 252-271 20-39 (106)
381 PRK13729 conjugal transfer pil 26.3 2.9E+02 0.0063 31.1 8.5 39 267-305 78-116 (475)
382 TIGR02492 flgK_ends flagellar 26.3 7E+02 0.015 26.1 11.1 59 246-307 143-205 (322)
383 PRK11020 hypothetical protein; 26.3 5.1E+02 0.011 23.9 8.5 46 245-290 6-56 (118)
384 PF13514 AAA_27: AAA domain 25.9 1.3E+03 0.029 28.4 28.8 35 350-384 971-1010(1111)
385 PRK02119 hypothetical protein; 25.7 4E+02 0.0086 22.3 8.5 51 253-303 4-54 (73)
386 KOG0288 WD40 repeat protein Ti 25.6 9.7E+02 0.021 26.8 13.7 79 286-369 90-171 (459)
387 PRK14139 heat shock protein Gr 25.5 4.9E+02 0.011 25.6 9.1 19 300-318 53-71 (185)
388 PF09755 DUF2046: Uncharacteri 25.4 8.5E+02 0.018 26.0 24.8 45 89-140 23-67 (310)
389 PRK11020 hypothetical protein; 25.4 3.1E+02 0.0067 25.2 7.0 20 284-303 36-55 (118)
390 PF15030 DUF4527: Protein of u 25.3 7.9E+02 0.017 25.6 11.7 91 175-287 10-101 (277)
391 cd08915 V_Alix_like Protein-in 25.1 8.1E+02 0.018 25.6 28.7 32 278-309 290-321 (342)
392 PF08172 CASP_C: CASP C termin 25.0 7.6E+02 0.016 25.3 11.2 38 281-318 81-118 (248)
393 PF05531 NPV_P10: Nucleopolyhe 24.9 4.4E+02 0.0095 22.5 7.4 11 267-277 44-54 (75)
394 PHA03386 P10 fibrous body prot 24.8 3.9E+02 0.0085 23.7 7.3 36 268-307 15-50 (94)
395 PRK10636 putative ABC transpor 24.6 4.7E+02 0.01 30.0 10.2 59 258-316 563-628 (638)
396 COG5200 LUC7 U1 snRNP componen 24.5 5E+02 0.011 26.5 9.0 115 256-381 112-239 (258)
397 cd09235 V_Alix Middle V-domain 24.4 8.5E+02 0.019 25.7 28.6 18 201-218 194-211 (339)
398 PF10805 DUF2730: Protein of u 24.4 4.9E+02 0.011 23.0 8.2 11 252-262 50-60 (106)
399 COG3352 FlaC Putative archaeal 24.4 3.9E+02 0.0084 25.8 7.8 57 244-300 72-129 (157)
400 PRK14158 heat shock protein Gr 24.2 5.8E+02 0.013 25.3 9.4 20 300-319 61-80 (194)
401 PRK05892 nucleoside diphosphat 24.2 4.1E+02 0.0089 25.3 8.1 15 179-193 59-73 (158)
402 PF13747 DUF4164: Domain of un 24.1 4.7E+02 0.01 22.6 10.0 61 91-151 13-76 (89)
403 KOG4593 Mitotic checkpoint pro 24.1 1.3E+03 0.027 27.5 31.1 40 179-218 163-210 (716)
404 PRK14145 heat shock protein Gr 24.0 5.3E+02 0.012 25.7 9.1 23 296-318 62-84 (196)
405 PRK14163 heat shock protein Gr 23.8 5.1E+02 0.011 26.2 9.0 12 305-316 66-77 (214)
406 PF14257 DUF4349: Domain of un 23.7 1.7E+02 0.0036 29.5 5.7 62 125-197 136-199 (262)
407 PRK09841 cryptic autophosphory 23.5 1.2E+03 0.027 27.2 16.6 14 369-382 403-416 (726)
408 COG0172 SerS Seryl-tRNA synthe 23.2 3.5E+02 0.0076 30.1 8.4 13 278-290 74-86 (429)
409 PRK14162 heat shock protein Gr 23.0 5.6E+02 0.012 25.4 9.0 18 300-317 60-77 (194)
410 PF09766 FimP: Fms-interacting 23.0 6.4E+02 0.014 27.0 10.2 71 85-159 83-153 (355)
411 PRK14140 heat shock protein Gr 23.0 6.1E+02 0.013 25.1 9.3 17 301-317 59-75 (191)
412 PF09432 THP2: Tho complex sub 23.0 6.4E+02 0.014 23.7 8.7 75 56-141 21-98 (132)
413 PF01920 Prefoldin_2: Prefoldi 22.7 4.7E+02 0.01 22.0 11.6 33 270-302 67-99 (106)
414 PF07426 Dynactin_p22: Dynacti 22.3 7.2E+02 0.016 24.1 16.5 46 273-318 120-165 (174)
415 PRK14127 cell division protein 22.2 5.3E+02 0.011 23.4 8.0 27 81-107 18-44 (109)
416 PHA03386 P10 fibrous body prot 22.2 3.8E+02 0.0082 23.8 6.7 22 257-278 11-32 (94)
417 PRK08871 flgK flagellar hook-a 22.0 1.3E+03 0.028 26.9 13.2 45 268-312 165-209 (626)
418 PF05483 SCP-1: Synaptonemal c 21.9 1.4E+03 0.03 27.3 31.6 102 246-347 596-710 (786)
419 PRK00736 hypothetical protein; 21.8 4.6E+02 0.0099 21.6 8.0 45 253-297 7-51 (68)
420 PRK14143 heat shock protein Gr 21.7 6.3E+02 0.014 25.8 9.4 8 372-379 173-180 (238)
421 PF01093 Clusterin: Clusterin; 21.7 1.2E+03 0.025 26.2 13.0 74 261-371 26-99 (436)
422 TIGR01807 CM_P2 chorismate mut 21.7 2.4E+02 0.0051 23.2 5.3 30 89-118 2-31 (76)
423 KOG1850 Myosin-like coiled-coi 21.7 1E+03 0.023 25.7 25.0 114 197-328 203-331 (391)
424 PF08581 Tup_N: Tup N-terminal 21.6 5.1E+02 0.011 22.1 9.8 59 246-304 6-64 (79)
425 KOG0972 Huntingtin interacting 21.5 1E+03 0.022 25.5 12.0 50 106-155 251-300 (384)
426 PF10267 Tmemb_cc2: Predicted 21.5 1.1E+03 0.024 25.9 14.0 183 10-195 131-328 (395)
427 PF05055 DUF677: Protein of un 21.4 1E+03 0.022 25.5 13.0 42 283-324 292-333 (336)
428 PF04849 HAP1_N: HAP1 N-termin 21.1 1E+03 0.022 25.4 19.0 31 86-116 160-190 (306)
429 PRK05683 flgK flagellar hook-a 21.1 4.1E+02 0.009 31.1 8.9 64 246-312 143-209 (676)
430 PLN03229 acetyl-coenzyme A car 21.1 1.5E+03 0.032 27.2 26.0 19 85-103 454-472 (762)
431 KOG4191 Histone acetyltransfer 21.0 4.4E+02 0.0096 29.6 8.5 58 246-303 403-470 (516)
432 PRK00373 V-type ATP synthase s 20.9 6.7E+02 0.015 24.5 9.2 30 275-304 28-57 (204)
433 PF03670 UPF0184: Uncharacteri 20.8 5.7E+02 0.012 22.3 7.5 35 266-300 34-68 (83)
434 TIGR01801 CM_A chorismate muta 20.7 2.4E+02 0.0052 24.9 5.4 31 89-119 7-37 (102)
435 KOG0243 Kinesin-like protein [ 20.7 1.7E+03 0.037 27.8 27.9 73 303-375 717-789 (1041)
436 KOG4005 Transcription factor X 20.6 9.7E+02 0.021 24.9 10.6 68 250-317 89-157 (292)
437 PF08946 Osmo_CC: Osmosensory 20.5 2.1E+02 0.0046 22.2 4.3 26 89-114 15-40 (46)
438 PF03194 LUC7: LUC7 N_terminus 20.5 7.7E+02 0.017 25.3 9.8 44 292-346 122-165 (254)
439 COG0172 SerS Seryl-tRNA synthe 20.4 4.2E+02 0.0091 29.5 8.3 29 124-152 71-99 (429)
440 COG5074 t-SNARE complex subuni 20.4 9.8E+02 0.021 24.9 12.4 67 296-369 61-135 (280)
441 PRK09239 chorismate mutase; Pr 20.4 6E+02 0.013 22.5 7.9 21 357-381 82-102 (104)
442 COG3937 Uncharacterized conser 20.2 6.7E+02 0.014 22.9 8.6 43 175-217 18-62 (108)
443 PF15294 Leu_zip: Leucine zipp 20.2 1E+03 0.022 25.0 20.2 40 173-213 59-101 (278)
444 PF04859 DUF641: Plant protein 20.2 7.2E+02 0.016 23.2 8.7 79 84-162 36-121 (131)
445 PF13747 DUF4164: Domain of un 20.1 5.7E+02 0.012 22.1 10.8 31 265-295 53-83 (89)
No 1
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=99.67 E-value=1.5e-13 Score=139.39 Aligned_cols=220 Identities=21% Similarity=0.338 Sum_probs=177.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhh--------
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGK-------- 160 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~k-------- 160 (518)
+.+..++..+...+..+++.|..++..++..+++|+++..+.+.++++.+.+++.+++..+++..|.+....
T Consensus 9 ~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 9 DELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888899999999999999999999999999999999999888888888877777777653322
Q ss_pred ------hhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010079 161 ------LRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKK 234 (518)
Q Consensus 161 ------lre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~k 234 (518)
+++..+... +...|+..|...|.+|+|.++|.+||+.+|+++++.|++|++....+. ..+...
T Consensus 89 ~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~----------k~~e~~ 157 (294)
T COG1340 89 RKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAK----------KALEEN 157 (294)
T ss_pred HHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 222222221 456799999999999999999999999999999999999999988744 233333
Q ss_pred hhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010079 235 EDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA 314 (518)
Q Consensus 235 e~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~ 314 (518)
..+++ +.++++.++++...++.+|..+.++...+..++..+..+.|.++.+.|++...+..++...++++..|-+...
T Consensus 158 ~~~~e--l~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~ 235 (294)
T COG1340 158 EKLKE--LKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQN 235 (294)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34433 3567899999999999999999999999999999999999999999999998888888888888887777777
Q ss_pred HHHHHHH
Q 010079 315 LLNEAKA 321 (518)
Q Consensus 315 ~l~kare 321 (518)
.++....
T Consensus 236 elre~~k 242 (294)
T COG1340 236 ELRELEK 242 (294)
T ss_pred HHHHHHH
Confidence 6666543
No 2
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.36 E-value=0.0015 Score=67.26 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=50.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 324 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~ 324 (518)
...++..++..+..++.+...++-.+-.+.+.+.++.|.++++.-++...+.+|+.+++.+.+.+..+...+...+..-.
T Consensus 173 ~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~ 252 (294)
T COG1340 173 KAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEK 252 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555556666666666666666666666666666666666666666666665554444
Q ss_pred ccCHH
Q 010079 325 KKDVQ 329 (518)
Q Consensus 325 ~~~v~ 329 (518)
.+...
T Consensus 253 ~~~~~ 257 (294)
T COG1340 253 AAKRR 257 (294)
T ss_pred HHHHH
Confidence 44333
No 3
>PRK03918 chromosome segregation protein; Provisional
Probab=97.88 E-value=0.021 Score=66.26 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 90 KIRAKIDLTDREIQRRNQARMQLMDELRA 118 (518)
Q Consensus 90 ~lKakI~~a~keI~klnq~R~~I~~alk~ 118 (518)
.+..+|..++.++..++.....+...+..
T Consensus 456 ~~~~ei~~l~~~~~~l~~~~~~l~~~~~~ 484 (880)
T PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRE 484 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555555444433
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.77 E-value=0.023 Score=69.43 Aligned_cols=230 Identities=9% Similarity=0.135 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHH-------
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMD-------ELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPL------- 154 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~-------alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~L------- 154 (518)
..+...+..+......+...+..+.. .+..++.+..++-.++..+..+...+...+.....++..+
T Consensus 712 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v 791 (1311)
T TIGR00606 712 KSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDV 791 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45556666666655555544333222 2233344455555555555554444444444444444333
Q ss_pred -------------HHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHHHHHH
Q 010079 155 -------------HQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIP----LSEEKQILREIKQLEGTREKV 217 (518)
Q Consensus 155 -------------qe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLs----L~EEKklLkEIkqLek~Rk~v 217 (518)
+..|..+.. ...+.+...|+++|...|..++..+..-.-. ..+-.++-.+|++|+.....+
T Consensus 792 ~~i~r~~~ei~~l~~qie~l~~--~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el 869 (1311)
T TIGR00606 792 TIMERFQMELKDVERKIAQQAA--KLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL 869 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222110 0111222358888888888888877654222 222333445566665544333
Q ss_pred HHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 218 MANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 297 (518)
Q Consensus 218 ~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~ 297 (518)
...+.++...+..+..+. ..|+++..++..++..|+.+...+.-+...+..++.+++.+....+..+ ..
T Consensus 870 ---~~~klkl~~~l~~r~~le-----~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 938 (1311)
T TIGR00606 870 ---KSEKLQIGTNLQRRQQFE-----EQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN---KK 938 (1311)
T ss_pred ---HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 344445555555444443 4678888888888888888888888888888888888777776666554 44
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHH
Q 010079 298 LRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGL 331 (518)
Q Consensus 298 LRkerde~n~~f~~~r~~l~karela~~~~v~el 331 (518)
++.+++.+...+.+.......+.++...|-...|
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL 972 (1311)
T TIGR00606 939 AQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYL 972 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555666666666666666666544433
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.75 E-value=0.03 Score=67.59 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=11.0
Q ss_pred CCCCCcceeecCCC
Q 010079 30 GPVKDESIIFGSHG 43 (518)
Q Consensus 30 ~~~~~~~i~fgs~~ 43 (518)
...|.|.|.+||.+
T Consensus 58 a~~~~DlIf~g~~~ 71 (1163)
T COG1196 58 ASKMSDLIFAGSGN 71 (1163)
T ss_pred ccCCcceeeCCCCC
Confidence 34589999999965
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.73 E-value=0.052 Score=64.21 Aligned_cols=46 Identities=11% Similarity=0.236 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010079 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKT 135 (518)
Q Consensus 90 ~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~ 135 (518)
.+...+..+..++..+......+...+..+......+...+..+..
T Consensus 678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~ 723 (1164)
T TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK 723 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444444444444444444333333333333
No 7
>PRK11637 AmiB activator; Provisional
Probab=97.70 E-value=0.075 Score=57.31 Aligned_cols=51 Identities=8% Similarity=0.076 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHh
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQ 139 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~ 139 (518)
..++.+|++++.+|..+.+....+...++....+...+..+|..+..+...
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~ 93 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRE 93 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555444444344433333333333333333333333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.70 E-value=0.024 Score=66.90 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhH
Q 010079 93 AKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKS 142 (518)
Q Consensus 93 akI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~ 142 (518)
..|..+..++..+...-..+...+.........+..++..+......+..
T Consensus 674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~ 723 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK 723 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444444444444444444444444444444444433
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.68 E-value=0.063 Score=67.29 Aligned_cols=244 Identities=18% Similarity=0.245 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcccCCCCCCCHHHH
Q 010079 100 REIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEEL 179 (518)
Q Consensus 100 keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEI 179 (518)
.++..++......-..+.....+...+..+++.|..+..++...+....++-+.|.+.++.+-+.-... -.-...+
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~----eek~~~l 1011 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAE----EEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 344444444444444444555555556666666666666555555444444444444444322110000 0012346
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhh--hhccchhHHHHHHHHHH
Q 010079 180 DDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQ--LMGSDLDGVKKESQAVW 257 (518)
Q Consensus 180 D~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq--~~~~eId~lKKeid~lr 257 (518)
...+..||-.++---..|..|++...+... ..|+..+.....+..+...-.+++.+..+ .+..++..+..+++...
T Consensus 1012 ~k~~~kle~~l~~le~~le~e~~~r~e~Ek--~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1012 NKAKAKLEQQLDDLEVTLEREKRIRMELEK--AKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 666777777777777788999999888873 33333333333333334333444555444 33445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------------------HHHHHHHHH
Q 010079 258 AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA---------------------YFFQYRALL 316 (518)
Q Consensus 258 ~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~---------------------~f~~~r~~l 316 (518)
+-+..+...++.+...|..|.+++.+-...|.++-..+.+|..++.++.. +|+..++.+
T Consensus 1090 ~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l 1169 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL 1169 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666666666666555555555555555444444443332 344444444
Q ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHHHHhCCh
Q 010079 317 NEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNK 350 (518)
Q Consensus 317 ~karela~~~~v~el~~~~~~eve~fm~~wn~~~ 350 (518)
.. ..+.....+.+++..|...|...-+..-+..
T Consensus 1170 ee-e~~~~e~~~~~lr~~~~~~~~el~~qle~l~ 1202 (1930)
T KOG0161|consen 1170 EE-ETLDHEAQIEELRKKHADSLAELQEQLEQLQ 1202 (1930)
T ss_pred HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2223335566667777777766665554333
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.63 E-value=0.11 Score=61.26 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQ 156 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe 156 (518)
..+..+++.++..+..+......+...+.........+..++..+......+...+.....++..++.
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655555555555555555555555555544444444443333333333333333
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.57 E-value=0.14 Score=62.04 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhh
Q 010079 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYK 141 (518)
Q Consensus 91 lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r 141 (518)
+..+|+.++..+..+......+...+......+.++..++..++-+...++
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELK 722 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333333444444444444444444443333333
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=97.54 E-value=0.22 Score=57.86 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=15.5
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010079 89 PKIRAKI-DLTDREIQRRNQARMQLMDELRAKRG 121 (518)
Q Consensus 89 ~~lKakI-~~a~keI~klnq~R~~I~~alk~~R~ 121 (518)
+.++..| +....+|..+...-..+...+.....
T Consensus 447 ~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~ 480 (880)
T PRK03918 447 EEHRKELLEEYTAELKRIEKELKEIEEKERKLRK 480 (880)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 55555555555444444444443333
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.53 E-value=0.22 Score=54.77 Aligned_cols=66 Identities=24% Similarity=0.211 Sum_probs=36.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 310 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~ 310 (518)
.+.+++..+...+..|..+......++.++..|......+..+...+..++.+|..++.++....+
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555566666555555555555666666666665555554433
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.52 E-value=0.18 Score=59.46 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSL 133 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaL 133 (518)
..+...++.++..+..+......+...+...+.....+..++..+
T Consensus 680 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 724 (1179)
T TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444444444444433333333333333333
No 15
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.48 E-value=0.16 Score=56.80 Aligned_cols=187 Identities=20% Similarity=0.296 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcccCC
Q 010079 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSG 170 (518)
Q Consensus 91 lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr~~ 170 (518)
+..++...+++...|.+....+-.....++.+-..+..+|...+.+...+....+........|......|..
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~------- 213 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE------- 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4556666666655555555555555555555555555555444444444443333333322222222222221
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHH
Q 010079 171 GICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVK 250 (518)
Q Consensus 171 ~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lK 250 (518)
.-++...+|..|+..|.+=+-...|--+++..++.+...++... ...+..++....+...... ....+.
T Consensus 214 ----q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~--~eLk~rLk~~~~~~~~~~~-----~~~~~~ 282 (546)
T PF07888_consen 214 ----QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLE--AELKQRLKETVVQLKQEET-----QAQQLQ 282 (546)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhh-----hhhhHH
Confidence 23456667777777776555555666666666666655555422 1222344444333222111 122344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 251 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 295 (518)
Q Consensus 251 Keid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i 295 (518)
.+.+.++.+|..+.+.+.+...+..-|..+|..+...||.....+
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeL 327 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAEL 327 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666777777777777776655554
No 16
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.46 E-value=0.095 Score=58.77 Aligned_cols=68 Identities=26% Similarity=0.420 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHH
Q 010079 266 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKE 333 (518)
Q Consensus 266 k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~ 333 (518)
.+..+.+.+..+.++++.+...+.+..+.+..||+.-.+....+-.++..+...+.+..+.++.+|.+
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~ 444 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPE 444 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcH
Confidence 36667777888888888888888888888888888887777777777777777766666655555443
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=97.46 E-value=0.4 Score=55.93 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEV-------NDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEl-------dal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
++.+.+++..+...+..+...+..+.+++..+...+ +.+....+.+-..+..|+..+.......-.++..+..
T Consensus 365 ~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 444 (880)
T PRK02224 365 AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEE 444 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443333 3344444555555666666666666555556666666
Q ss_pred HHH
Q 010079 319 AKA 321 (518)
Q Consensus 319 are 321 (518)
++.
T Consensus 445 ~~~ 447 (880)
T PRK02224 445 AEA 447 (880)
T ss_pred HHH
Confidence 664
No 18
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.43 E-value=0.067 Score=54.05 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHH
Q 010079 122 VRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEK 201 (518)
Q Consensus 122 ~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEK 201 (518)
++.++...|+.++++...++..+..+..++..|...+..+. +...++..+|..++..+ .+.-+..+=.
T Consensus 25 ~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e-----------~ei~~~r~r~~~~e~kl-~~v~~~~e~~ 92 (239)
T COG1579 25 RIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLE-----------SEIQEIRERIKRAEEKL-SAVKDERELR 92 (239)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH-hccccHHHHH
Confidence 33344444555555555555555555555655555554332 23556778888888888 4444566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 202 QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEV 281 (518)
Q Consensus 202 klLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEl 281 (518)
.+-.||..++..+..+.. .|..+++ ++..+.+++..++..+..++..+.++. ..+..++
T Consensus 93 aL~~E~~~ak~r~~~le~------el~~l~~------------~~~~l~~~i~~l~~~~~~~e~~~~e~~---~~~e~e~ 151 (239)
T COG1579 93 ALNIEIQIAKERINSLED------ELAELME------------EIEKLEKEIEDLKERLERLEKNLAEAE---ARLEEEV 151 (239)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 677778777777665331 2223322 233444444444444444443333322 3455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010079 282 NDVAEKRDKAFANIKELRKQRDEGNAYFFQYRAL 315 (518)
Q Consensus 282 dal~~~rdeay~~i~~LRkerde~n~~f~~~r~~ 315 (518)
..+.+++...+..+..|....+.---.||+..+.
T Consensus 152 ~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~ 185 (239)
T COG1579 152 AEIREEGQELSSKREELKEKLDPELLSEYERIRK 185 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 7777777788888888888887666666665443
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.38 E-value=0.23 Score=54.64 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010079 251 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 306 (518)
Q Consensus 251 Keid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n 306 (518)
..+..++..|......+..+..++..|+.++..+.....+....+..|..+++++.
T Consensus 337 ~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~ 392 (562)
T PHA02562 337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIV 392 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333
No 20
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.30 E-value=0.4 Score=58.86 Aligned_cols=38 Identities=5% Similarity=-0.009 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDL 126 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL 126 (518)
..+...|..++.++..+......+.........+...|
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444333333333333333333333
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=97.22 E-value=0.53 Score=54.95 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEG 137 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~ 137 (518)
..+...++.+...+..+......+...+.........+..++..+..+.
T Consensus 345 e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el 393 (880)
T PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665555444444444444444444444443333
No 22
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=0.5 Score=55.63 Aligned_cols=245 Identities=17% Similarity=0.226 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcccC
Q 010079 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARS 169 (518)
Q Consensus 90 ~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr~ 169 (518)
.|.+.++.++.+|...++.-.++.+.++.....|.....+...|+.+....+..+......+.+....|..++
T Consensus 682 ~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~------- 754 (1200)
T KOG0964|consen 682 ELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIK------- 754 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH-------
Confidence 3556666666666666666666666666666655555555555555444443333332222322222222221
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCC---CChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhc
Q 010079 170 GGICSSEEELDDLIRSLQYRIQHEI---IPLSEEK---QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMG 243 (518)
Q Consensus 170 ~~~~~S~EEID~~I~~LE~rIqhgS---LsL~EEK---klLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~ 243 (518)
.|...+...-..+|..+.+.- |++.+.. ++=.+|.+|......+.+ -+. +...-+.++...
T Consensus 755 ----~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~---er~---~~~~rk~~le~~--- 821 (1200)
T KOG0964|consen 755 ----TSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALRE---ERI---DIETRKTALEAN--- 821 (1200)
T ss_pred ----HHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHH---
Confidence 122223333333333333322 4444443 233466665555443321 110 011111111111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMS 323 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela 323 (518)
...-|.+.++.+.+.|..+.+ .....++...+.++..+..+.+.+...+..|....+.+.+..-+.+..+-+++.+.
T Consensus 822 -l~~kL~~r~~~l~~ei~~~~d--~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~le 898 (1200)
T KOG0964|consen 822 -LNTKLYKRVNELEQEIGDLND--SSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLE 898 (1200)
T ss_pred -HHHHHHhhhhHHHHHhhhccc--ccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344445555444444432 12334567778888888888888888888999999999999999999999998887
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Q 010079 324 VKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRL 360 (518)
Q Consensus 324 ~~~~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~ 360 (518)
...... + . +..++|+.|..-+.--.=|++|.++|
T Consensus 899 k~~~~~-~-~-~dKe~Ek~~~rk~~Ll~KreE~~ekI 932 (1200)
T KOG0964|consen 899 KEKKDN-I-N-FDKELEKLVRRKHMLLKKREECCEKI 932 (1200)
T ss_pred HHHhhh-h-h-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764333 2 1 22889999988888888888877763
No 23
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.33 Score=57.11 Aligned_cols=118 Identities=16% Similarity=0.313 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhhhhhhhhHHhhhhccchhHHHHHHHH
Q 010079 197 LSEEKQILREIKQLEGTREKVMANAA---------------------MRAKIQESMGKKEDIQDQLMGSDLDGVKKESQA 255 (518)
Q Consensus 197 L~EEKklLkEIkqLek~Rk~v~a~~a---------------------~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~ 255 (518)
+.+|+++...|..|+..+..+.+-.+ ...-|.+..++.+. +..+|..+..++.+
T Consensus 355 ~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~-----lq~e~~~~e~~l~~ 429 (1200)
T KOG0964|consen 355 VDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENI-----LQKEIEDLESELKE 429 (1200)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHHHHHHHHH
Confidence 56788888888888876555443111 01111111111111 22345555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010079 256 VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 319 (518)
Q Consensus 256 lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~ka 319 (518)
.-.+|+++...+.....++..+..++.+++.++++++..++.|=.+-..+...+-..+.++..+
T Consensus 430 ~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 430 KLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred HHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444444444444445555555555555444444444444444444444444
No 24
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.14 E-value=0.3 Score=48.83 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=55.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGK-------VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 316 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k-------~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l 316 (518)
..|..|..++..+.+.++.+... ...+...|..|...+..+-...+.+-.....|-.+++.+...++..+...
T Consensus 141 ~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 141 SKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666533 34445567788888888888888888888888888888888888777776
Q ss_pred HHHHH
Q 010079 317 NEAKA 321 (518)
Q Consensus 317 ~kare 321 (518)
..++.
T Consensus 221 ~~~~~ 225 (237)
T PF00261_consen 221 KKVQE 225 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 25
>PRK11637 AmiB activator; Provisional
Probab=97.11 E-value=0.57 Score=50.60 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHh
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~ 159 (518)
..++.+|..++++|..+......+...+..+..+-..+..+|..+..+.......+.....+|..++..|.
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777766666666676666666666666666666666666666666666666665554
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=0.43 Score=57.09 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010079 263 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 321 (518)
Q Consensus 263 l~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~kare 321 (518)
....+...+..++.+..++...+.++.++.+.+..|+.+...++...+..|..+..++.
T Consensus 533 ~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 533 SSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444556677777777777777777777777777777777777777777777665
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.95 E-value=0.45 Score=55.44 Aligned_cols=235 Identities=19% Similarity=0.292 Sum_probs=136.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhh-------hhhhhcccCCCCCCCHHHHHHHHH
Q 010079 112 LMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGK-------LRTTNNARSGGICSSEEELDDLIR 184 (518)
Q Consensus 112 I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~k-------lre~~nAr~~~~~~S~EEID~~I~ 184 (518)
+-..+.++..+..-|.+.+.+|+.........++.+...+..+++.+.. +++...... .-+.-|..+|.
T Consensus 327 lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e----~ki~~Lq~kie 402 (775)
T PF10174_consen 327 LKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKE----RKINVLQKKIE 402 (775)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3445566777777788888888888888777777777777777765432 222211100 01222444455
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhh----------hhccchhHHHHHHH
Q 010079 185 SLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQ----------LMGSDLDGVKKESQ 254 (518)
Q Consensus 185 ~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq----------~~~~eId~lKKeid 254 (518)
.|+..+- ..++++-..-..|.. =..+.......+.+.+++..++.++.. -...+++..++++.
T Consensus 403 ~Lee~l~------ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~ 475 (775)
T PF10174_consen 403 NLEEQLR------EKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELK 475 (775)
T ss_pred HHHHHHH------HHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555442 233333333333431 111111122223334444443333332 23456777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc-C------
Q 010079 255 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK-D------ 327 (518)
Q Consensus 255 ~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~-~------ 327 (518)
.++.++..|...+....-.+..++++...+..-..+.+..|..|...+...+..+-..-..+.+++..+... .
T Consensus 476 ~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ 555 (775)
T PF10174_consen 476 ELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQ 555 (775)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHH
Confidence 777777777777777777777777888888888888888888888888888887777777776643322221 1
Q ss_pred -HHH---HHHHHHHHHHHHHHHHhCChhhHHHHH
Q 010079 328 -VQG---LKELSNSEVEKYMTLWNNNKAFRDDYE 357 (518)
Q Consensus 328 -v~e---l~~~~~~eve~fm~~wn~~~~FR~dY~ 357 (518)
|.. --.-|.+|||+.|...-+-..=+.+-.
T Consensus 556 ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke 589 (775)
T PF10174_consen 556 EVTRYREESEKAQAEVERLLDILREAENEKNDKE 589 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 222 234578999999987755444444443
No 28
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=0.77 Score=54.30 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=57.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMS- 323 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela- 323 (518)
++.++.++++....++.+-....+.-..++..|+-+..++...++..-..+..+..+.+.+-.+.-+.+-.+.++..-.
T Consensus 788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~ 867 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVK 867 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 5566666666666665555555555555666666666666666666655555555555555555444444444432211
Q ss_pred ----hccCHHHHHHHHHHHHHHHHHHH
Q 010079 324 ----VKKDVQGLKELSNSEVEKYMTLW 346 (518)
Q Consensus 324 ----~~~~v~el~~~~~~eve~fm~~w 346 (518)
.=.+...-+..|++|+..++..|
T Consensus 868 ~~~~el~~~k~k~~~~dt~i~~~~~~~ 894 (1174)
T KOG0933|consen 868 KAQAELKDQKAKQRDIDTEISGLLTSQ 894 (1174)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHH
Confidence 11344455566777777777777
No 29
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.74 E-value=2.8 Score=53.35 Aligned_cols=54 Identities=28% Similarity=0.410 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhc--CCC-ChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhh
Q 010079 178 ELDDLIRSLQYRIQH--EII-PLSEEKQILREI-----KQLEGTREKVMANAAMRAKIQESM 231 (518)
Q Consensus 178 EID~~I~~LE~rIqh--gSL-sL~EEKklLkEI-----kqLek~Rk~v~a~~a~ra~iq~s~ 231 (518)
..+++|..|+..|+. ..+ +|.-||+.+.+. ..|...++++.......+++...+
T Consensus 961 ~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l 1022 (1930)
T KOG0161|consen 961 AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQL 1022 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666665554 111 366677666554 233344444444333333333333
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.69 E-value=0.91 Score=46.51 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLR 131 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLk 131 (518)
..|...|..++..|..+...+..+...+...+.....+..++.
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e 92 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYE 92 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHH
Confidence 5577888888888887777666666655554444444444443
No 31
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.54 E-value=2.3 Score=52.02 Aligned_cols=72 Identities=15% Similarity=0.302 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHH
Q 010079 87 DDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (518)
Q Consensus 87 DD~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L 158 (518)
+++.++++++.+...|..+......+-..+.........+...+..+..+....+..+.....+...++..+
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 672 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEI 672 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 668999999999999998887777777777666666666666666666666655555555555554444444
No 32
>PRK01156 chromosome segregation protein; Provisional
Probab=96.54 E-value=2.5 Score=49.77 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=5.2
Q ss_pred chhhhhcccccc
Q 010079 11 ESVAEVHNSLAQ 22 (518)
Q Consensus 11 ~~~~~~~~~~~~ 22 (518)
++|+ |..|||.
T Consensus 31 ~NGs-GKSsile 41 (895)
T PRK01156 31 KNGA-GKSSIVD 41 (895)
T ss_pred CCCC-CHHHHHH
Confidence 3444 5555543
No 33
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.42 E-value=1.3 Score=52.49 Aligned_cols=227 Identities=13% Similarity=0.223 Sum_probs=135.3
Q ss_pred ceEEeccCCCCChHHHHHHHHHHHHHHHHH----HHHHH----------HHHHHHHHHhH-HHHHHHHHHHHHHhhHhhh
Q 010079 77 NFYFIRHRQYDDPKIRAKIDLTDREIQRRN----QARMQ----------LMDELRAKRGV-RGDLAAQLRSLKTEGRQYK 141 (518)
Q Consensus 77 ~fyfvR~p~pDD~~lKakI~~a~keI~kln----q~R~~----------I~~alk~~R~~-R~eL~~qLkaLr~q~~~~r 141 (518)
|+|||==-.+..-.+...++++..+|..|- |.|-. +.+..++.-.. --.++..|..|+...+++-
T Consensus 115 S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le 194 (1072)
T KOG0979|consen 115 SKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLE 194 (1072)
T ss_pred cceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHH
Confidence 899997777888888899998888887443 22322 22333444444 6677777888888877777
Q ss_pred HHHHHHHHhhHHHHHHHhhhh-hhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 142 SVMDDKRKEMEPLHQALGKLR-TTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMAN 220 (518)
Q Consensus 142 ~~~~~K~~Eik~Lqe~L~klr-e~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~ 220 (518)
.....+...++.|.+.++++. +..+ |.--+-+..+|..|+.. +++++=+..=.+-.+++..++.+.
T Consensus 195 ~~~~~~~~~l~~L~~~~~~l~kdVE~------~rer~~~~~~Ie~l~~k-----~~~v~y~~~~~ey~~~k~~~~r~k-- 261 (1072)
T KOG0979|consen 195 DKLTTKTEKLNRLEDEIDKLEKDVER------VRERERKKSKIELLEKK-----KKWVEYKKHDREYNAYKQAKDRAK-- 261 (1072)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHh-----ccccchHhhhHHHHHHHHHHHHHH--
Confidence 777777777777776665544 1111 11112223334444321 122221222222222222222111
Q ss_pred HHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 221 AAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 221 ~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
..+.+......-|. ..+.+|..+.....++++.+...+.+....+..+.+.++.+.+...++++.+..|++
T Consensus 262 ----~~~r~l~k~~~pi~-----~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~ 332 (1072)
T KOG0979|consen 262 ----KELRKLEKEIKPIE-----DKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKK 332 (1072)
T ss_pred ----HHHHHHHHhhhhhh-----hhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111111121 234556667777888888888888888888888888888888888888888888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhc
Q 010079 301 QRDEGNAYFFQYRALLNEAKAMSVK 325 (518)
Q Consensus 301 erde~n~~f~~~r~~l~karela~~ 325 (518)
+.+......-+.+..+-.++.-..+
T Consensus 333 ~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 333 AAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8888888777777777777655444
No 34
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.41 E-value=2.5 Score=48.20 Aligned_cols=10 Identities=20% Similarity=0.760 Sum_probs=5.9
Q ss_pred CccccceEEe
Q 010079 72 PRVIHNFYFI 81 (518)
Q Consensus 72 ~~~~~~fyfv 81 (518)
|..+++|||.
T Consensus 144 p~~~~~~FfF 153 (650)
T TIGR03185 144 PLELADLFFF 153 (650)
T ss_pred CHhHHHHhcc
Confidence 4456666664
No 35
>PRK01156 chromosome segregation protein; Provisional
Probab=96.40 E-value=3 Score=49.03 Aligned_cols=27 Identities=7% Similarity=0.115 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 90 KIRAKIDLTDREIQRRNQARMQLMDEL 116 (518)
Q Consensus 90 ~lKakI~~a~keI~klnq~R~~I~~al 116 (518)
.+...|..+..+|..++...-.|...+
T Consensus 473 ~~~~~i~~l~~~i~~l~~~~~~l~~~~ 499 (895)
T PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDEKI 499 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666655555444444333
No 36
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.54 Score=54.21 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAE 286 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~ 286 (518)
.+++|.++...-.+.|......++.++..+++.+-....++.
T Consensus 550 qldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 550 QLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444445555555555554444444333
No 37
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.27 E-value=3.9 Score=49.03 Aligned_cols=303 Identities=21% Similarity=0.242 Sum_probs=142.7
Q ss_pred cccCCCCCCcccccC-CCCc------cccceEEecc---C--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 55 NVSNANLPKDVGEEW-PEPR------VIHNFYFIRH---R--QYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGV 122 (518)
Q Consensus 55 ~~~~~~~p~da~~~~-p~~~------~~~~fyfvR~---p--~pDD~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~ 122 (518)
+.+-..||..+.... |.+. +.|.||-.+. | .++...+...|..++.++..+...-..+....+.....
T Consensus 611 ~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~ 690 (1074)
T KOG0250|consen 611 FMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKN 690 (1074)
T ss_pred HHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334666665554 1111 1244555433 2 24556777777777777766664222222222333333
Q ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcc-cCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHH
Q 010079 123 RGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNA-RSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEK 201 (518)
Q Consensus 123 R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nA-r~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEK 201 (518)
..++...++.|..+..+.+..+..+.-+|..|+.. + -....-.+.+++-.+|...+..|..--.++.+.+
T Consensus 691 l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~---------~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~ 761 (1074)
T KOG0250|consen 691 LEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT---------AEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLK 761 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333333344444333332 1 1112346788888899999998888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHH-------H---HHHHHHHHHHHHHHH
Q 010079 202 QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQA-------V---WAKISHLEGKVKALD 271 (518)
Q Consensus 202 klLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~-------l---r~kIKel~~k~kal~ 271 (518)
.=+..|....... ...|++.+..++..+...++..+. ++..++.++..-+. + -..|+.++..+..+.
T Consensus 762 ~e~e~~~~e~~e~--~~~~~~~~~~l~~e~~~l~~l~~e-l~~r~dk~~s~e~~~~HyE~~~K~~l~~l~~~E~~~~~~e 838 (1074)
T KOG0250|consen 762 EELEHIELEAQEL--EEYYAAGREKLQGEISKLDALKEE-LKLREDKLRSAEDEKRHYEDKLKSRLEELKQKEVEKVNLE 838 (1074)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhhh
Confidence 7666665544332 234555555555544443333332 11222222221000 0 001111111111111
Q ss_pred H------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHhhccCHHH
Q 010079 272 E------------------EIEALQQEVNDVAEKRDKAFANIKELRKQ---RDEGNAYFFQYRALLNEAKAMSVKKDVQG 330 (518)
Q Consensus 272 ~------------------ei~~LqeEldal~~~rdeay~~i~~LRke---rde~n~~f~~~r~~l~karela~~~~v~e 330 (518)
. ++..+..=...++..++.+-..+...+.- ..++...+|..|..+.+-..+...
T Consensus 839 ~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~~~~k~~----- 913 (1074)
T KOG0250|consen 839 EPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKEDELKVT----- 913 (1074)
T ss_pred cchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHH-----
Confidence 0 11111111122333333333333333322 234455666666666665554443
Q ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHHHhhhhccCCCC
Q 010079 331 LKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRI 375 (518)
Q Consensus 331 l~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR~ 375 (518)
|.++...=-+-+-.+|.+-..||..|-.+-.+-- .+++..-|-+
T Consensus 914 ~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F-~~~l~~R~~s 957 (1074)
T KOG0250|consen 914 LDELLKALGEALESREQKYQKFRKLLTRRATEEF-DALLGKRGFS 957 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccccC
Confidence 3333333345566788888999999887766543 3444444433
No 38
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.12 E-value=3.6 Score=47.23 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=21.3
Q ss_pred CChhhHHHHHHHhHHHHHhhhhccCCC
Q 010079 348 NNKAFRDDYEKRLLQSLDMRQLSRDGR 374 (518)
Q Consensus 348 ~~~~FR~dY~k~~~~s~~~R~~~~DGR 374 (518)
..-+.|+||.+.-..-|.||+.--.-|
T Consensus 601 q~aarrEd~~R~Ei~~LqrRlqaaE~R 627 (961)
T KOG4673|consen 601 QQAARREDMFRGEIEDLQRRLQAAERR 627 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999998765544
No 39
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.09 E-value=2.9 Score=47.02 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 010079 99 DREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTE 136 (518)
Q Consensus 99 ~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q 136 (518)
.++|..||..=.-.|+.++-+-++=..|.-+|.-|+.-
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666555556666666655555555555555543
No 40
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.94 E-value=4.4 Score=49.69 Aligned_cols=95 Identities=17% Similarity=0.339 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 010079 203 ILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKV----KALDEEIEALQ 278 (518)
Q Consensus 203 lLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~----kal~~ei~~Lq 278 (518)
+-++|+..+..|..|..|..-. +..+...+.+.+ .-..+..++..+..++..+...+ ..++..+..+.
T Consensus 783 L~~~l~~ie~~r~~V~eY~~~~---~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le 854 (1201)
T PF12128_consen 783 LEKELKRIEERRAEVIEYEDWL---QEEWDKVDELRE-----EKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELE 854 (1201)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH---HHHHHhhhhhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447777788888888776643 333333222222 23334444444444444443333 22333444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 279 QEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 279 eEldal~~~rdeay~~i~~LRkerde~ 305 (518)
.++..+.+....+...+..|+.-...+
T Consensus 855 ~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 855 EELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555555555555555555555544444
No 41
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.88 E-value=5.2 Score=46.98 Aligned_cols=17 Identities=35% Similarity=0.345 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010079 176 EEELDDLIRSLQYRIQH 192 (518)
Q Consensus 176 ~EEID~~I~~LE~rIqh 192 (518)
++..|..|..||..+.-
T Consensus 233 ie~Kd~ki~~lEr~l~~ 249 (775)
T PF10174_consen 233 IEEKDTKIASLERMLRD 249 (775)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566666666555444
No 42
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.77 E-value=4.4 Score=45.31 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLM 113 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~ 113 (518)
...+..|..++.++..+...|+...
T Consensus 133 ~~~k~EL~~lr~e~~~~~~~k~~A~ 157 (522)
T PF05701_consen 133 DSVKQELEKLRQELASALDAKNAAL 157 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776655555433
No 43
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.62 E-value=7.7 Score=47.04 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=10.3
Q ss_pred hhHhHhhHHHHHHH
Q 010079 496 KEIIYGTYFFTITV 509 (518)
Q Consensus 496 ~~~~~~~~~~~~~~ 509 (518)
.|..+|++|.+.++
T Consensus 1138 dEFm~gf~~Is~kL 1151 (1293)
T KOG0996|consen 1138 DEFMAGFNIISMKL 1151 (1293)
T ss_pred HHHHHHHHHHHHHH
Confidence 67888888877553
No 44
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.60 E-value=2.7 Score=51.33 Aligned_cols=193 Identities=17% Similarity=0.211 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhh-hhccchhHHHHHH
Q 010079 175 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQ-LMGSDLDGVKKES 253 (518)
Q Consensus 175 S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq-~~~~eId~lKKei 253 (518)
..+....+|..+-....|......-...+..|-..+...+..+.. .+..+.. ..+++ ..-..+..++.+.
T Consensus 796 d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rk------e~E~~~k---~~~~~~~~i~~l~~~~~e~ 866 (1294)
T KOG0962|consen 796 DLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRK------EIECLQK---EVIEQEREISRLINLRNEL 866 (1294)
T ss_pred HHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHH------HHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344456667777777777555544444444454443333332221 1111111 11111 0001122233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHH
Q 010079 254 QAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKE 333 (518)
Q Consensus 254 d~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~ 333 (518)
-....++...-.....+..++..|+++...+..+++++-..+.-|+...++...+|++-.....- .+..++..+..+.+
T Consensus 867 k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~~~aqk~~~~ine 945 (1294)
T KOG0962|consen 867 KEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SEKLAQKKRNDINE 945 (1294)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHH
Confidence 33333344444456667788999999999999999999999999999999999999988777555 55555555555554
Q ss_pred HHHHHHHHHHHHHhCChhhHH----HHHHHhHHHHHhhhhccCCCCCCCCCC
Q 010079 334 LSNSEVEKYMTLWNNNKAFRD----DYEKRLLQSLDMRQLSRDGRIRNPDEK 381 (518)
Q Consensus 334 ~~~~eve~fm~~wn~~~~FR~----dY~k~~~~s~~~R~~~~DGR~~~pde~ 381 (518)
. +..|......+..|+. +|-..+++.+..|+..+|+|+++--..
T Consensus 946 ~----~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~ 993 (1294)
T KOG0962|consen 946 K----VSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQK 993 (1294)
T ss_pred H----HHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 6778888888888875 344667889999999999998765433
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.49 E-value=1.4 Score=49.57 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Q 010079 265 GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMT 344 (518)
Q Consensus 265 ~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~~~~~eve~fm~ 344 (518)
+++..+...++.|..++..+-..=..+-+.|..|+-+.++-...|...-.+.- ..+..+++-|...+--|..
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd--------~~i~~mReec~~l~~Elq~ 367 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKD--------AEIAKMREECQQLSVELQK 367 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHH--------HHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444445555566666555554444332221 2334444555554444444
Q ss_pred HHhCChhh
Q 010079 345 LWNNNKAF 352 (518)
Q Consensus 345 ~wn~~~~F 352 (518)
|....=+.
T Consensus 368 LlD~ki~L 375 (546)
T KOG0977|consen 368 LLDTKISL 375 (546)
T ss_pred hhchHhHH
Confidence 44433333
No 46
>PRK09039 hypothetical protein; Validated
Probab=95.47 E-value=2.6 Score=44.77 Aligned_cols=63 Identities=21% Similarity=0.359 Sum_probs=39.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 243 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 243 ~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
..+|+..+........++.-|..++.+++..+..|+..++++..+..++...|..|...++..
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666666666666666666555443
No 47
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.13 E-value=9.7 Score=48.29 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 010079 172 ICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK 216 (518)
Q Consensus 172 ~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~ 216 (518)
.|..++++..-+...+-..+..+.++.+=+-++..+..++-.|+.
T Consensus 1186 ~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~Es 1230 (1822)
T KOG4674|consen 1186 LNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRES 1230 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHh
Confidence 467778888888888888888888899889999999888866653
No 48
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.09 E-value=8.1 Score=44.15 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGR 138 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~ 138 (518)
..+..+++.++.++..+......+...+...+.+...+..++..++...+
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~ 254 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666655555555555566666666666655555443
No 49
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.05 E-value=8.8 Score=44.30 Aligned_cols=107 Identities=24% Similarity=0.301 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHH-
Q 010079 174 SSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKE- 252 (518)
Q Consensus 174 ~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKe- 252 (518)
+-.++...+|..||..+|.. ..|-.-+=+||++|++...... ..+.+.+++.++.+++ .+=..|.|+
T Consensus 402 sl~~e~~QRva~lEkKvqa~---~kERDalr~e~kslk~ela~~l--------~~DeLaEkdE~I~~lm-~EGEkLSK~q 469 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQAL---TKERDALRREQKSLKKELAAAL--------LKDELAEKDEIINQLM-AEGEKLSKKQ 469 (961)
T ss_pred chHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHH-HHHHHhHHHH
Confidence 45688999999999999864 3444455568888877654322 1234555565555511 111223333
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 253 ------SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF 292 (518)
Q Consensus 253 ------id~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay 292 (518)
|..||+++++-..-..+..+.|..|+.+.+.++...+..-
T Consensus 470 l~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Ke 515 (961)
T KOG4673|consen 470 LAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKE 515 (961)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHH
Confidence 3445555555555566666788888888888877665543
No 50
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.00 E-value=4.4 Score=40.58 Aligned_cols=63 Identities=13% Similarity=0.253 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY 308 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~ 308 (518)
.+.+...+..|..++++....+......+..|..+++.+.......-.....+..++|...++
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~e 233 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666666666666666655443
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.98 E-value=11 Score=45.29 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHHHhhhhccCCCCCCCCCC
Q 010079 329 QGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 381 (518)
Q Consensus 329 ~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR~~~pde~ 381 (518)
..|+.+..++-++.+ .|= +|+-.+|.-..+|-...-+-..||=.+
T Consensus 457 ~~l~~lk~~k~dkvs-------~FG-~~m~~lL~~I~r~~~~f~~~P~GPlG~ 501 (1074)
T KOG0250|consen 457 EELKDLKKTKTDKVS-------AFG-PNMPQLLRAIERRKRRFQTPPKGPLGK 501 (1074)
T ss_pred HHHHHHHhcccchhh-------hcc-hhhHHHHHHHHHHHhcCCCCCCCCccc
Confidence 344444444444333 344 778888888877766555555555444
No 52
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.88 E-value=8.6 Score=43.39 Aligned_cols=103 Identities=19% Similarity=0.308 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 324 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~ 324 (518)
+|..+.+..+.+...+..-.--+..+...+..+.+.++.+..+.......+..||+.-.........++..+...+....
T Consensus 352 ~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 352 QLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333347778888899999999999999999999999999888888888888888888888777
Q ss_pred ccCHHHH-------HHHHHHHHHHHHHHHh
Q 010079 325 KKDVQGL-------KELSNSEVEKYMTLWN 347 (518)
Q Consensus 325 ~~~v~el-------~~~~~~eve~fm~~wn 347 (518)
+-|.-.| =..+.+++++.+...|
T Consensus 432 k~nLPGlp~~y~~~~~~~~~~i~~l~~~L~ 461 (560)
T PF06160_consen 432 KSNLPGLPEDYLDYFFDVSDEIEELSDELN 461 (560)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 7555433 2233445555555444
No 53
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.70 E-value=9.6 Score=43.05 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010079 271 DEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 306 (518)
Q Consensus 271 ~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n 306 (518)
.++|..|+.++..+..--++-+.....|..++...+
T Consensus 370 k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~ 405 (546)
T PF07888_consen 370 KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK 405 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666777776666666666667777777665544
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.66 E-value=9.8 Score=42.95 Aligned_cols=92 Identities=13% Similarity=0.278 Sum_probs=66.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG---------NAYFFQYRA 314 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~---------n~~f~~~r~ 314 (518)
..+..++.+++.+..+++.+.+....+.+.+..|...-..+....+..-..+..++...... ...|+....
T Consensus 376 ~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~ 455 (569)
T PRK04778 376 IAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSD 455 (569)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 35788888888888888888888888888888888888888888887777777777555443 345666666
Q ss_pred HHHHHHHHhhcc--CHHHHHHHH
Q 010079 315 LLNEAKAMSVKK--DVQGLKELS 335 (518)
Q Consensus 315 ~l~karela~~~--~v~el~~~~ 335 (518)
.+..+..-...| |+.++...+
T Consensus 456 ~i~~l~~~L~~g~VNm~ai~~e~ 478 (569)
T PRK04778 456 EIEALAEELEEKPINMEAVNRLL 478 (569)
T ss_pred HHHHHHHHhccCCCCHHHHHHHH
Confidence 666665555556 777777333
No 55
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=12 Score=43.71 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHH
Q 010079 176 EEELDDLIRSLQYRIQHEIIPLSE 199 (518)
Q Consensus 176 ~EEID~~I~~LE~rIqhgSLsL~E 199 (518)
.+-|+.++..|..+++.--..+.-
T Consensus 446 letLn~k~qqls~kl~Dvr~~~tt 469 (1118)
T KOG1029|consen 446 LETLNFKLQQLSGKLQDVRVDITT 469 (1118)
T ss_pred HHHHHHHHHHHhhhhhhheeccch
Confidence 344555555555555554444433
No 56
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.31 E-value=7 Score=39.80 Aligned_cols=55 Identities=31% Similarity=0.435 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
++.|..+++.+..++..|++++..+.+++..|.+++..+....-..-..+.+++.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~ 145 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEA 145 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443333333333333333
No 57
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.30 E-value=16 Score=43.91 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=13.9
Q ss_pred chhhhHHHHHHhhhHHHHHHHH
Q 010079 449 EKKVDEAKLREMKKEEDRAKAR 470 (518)
Q Consensus 449 ~~e~d~a~lKe~~r~ee~~Kak 470 (518)
+.|...+.|+.|++--+.-|.|
T Consensus 991 ~~E~~~~~lk~k~~~Ie~Dk~k 1012 (1174)
T KOG0933|consen 991 RAEEKEAALKTKKEIIEKDKSK 1012 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 4556667788877665555444
No 58
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.25 E-value=13 Score=42.59 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 265 GKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 297 (518)
Q Consensus 265 ~k~kal~~ei~~LqeEldal~~~rdeay~~i~~ 297 (518)
..+..+-.+...||.+++.+..+-+.-|.-..+
T Consensus 505 ~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE 537 (594)
T PF05667_consen 505 EEIEKILSDTRELQKEINSLTGKLDRTFTVTDE 537 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334444444555555555555555555544433
No 59
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.15 E-value=8.8 Score=40.40 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=61.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010079 243 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 320 (518)
Q Consensus 243 ~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~kar 320 (518)
..+......++..|.++|-.+..+.+.+..+-..|+..|.+.++..+.+-..+..|+..+.+...-|...+..++..|
T Consensus 226 ~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566677777778888888878888888888888888888888888888888888888888888888887777654
No 60
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.10 E-value=1.5 Score=40.06 Aligned_cols=88 Identities=24% Similarity=0.342 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc--cCHH
Q 010079 252 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK--KDVQ 329 (518)
Q Consensus 252 eid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~--~~v~ 329 (518)
++..+++.+..+...-+.+..+|-.|..+.+.+ ......+..|+.+..+++..|--....+.+..+.+.. .|+.
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 333444444444444444444444444444333 2233445566666666666666666666665554443 6999
Q ss_pred HHHHHHHHHHHHHH
Q 010079 330 GLKELSNSEVEKYM 343 (518)
Q Consensus 330 el~~~~~~eve~fm 343 (518)
+|...|..||+..|
T Consensus 107 DlK~myr~Qi~~lv 120 (120)
T PF12325_consen 107 DLKEMYREQIDQLV 120 (120)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998753
No 61
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=94.01 E-value=13 Score=44.81 Aligned_cols=189 Identities=15% Similarity=0.245 Sum_probs=94.1
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhhcc----cCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH-H
Q 010079 143 VMDDKRKEMEPLHQALGKLRTTNNA----RSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK-V 217 (518)
Q Consensus 143 ~~~~K~~Eik~Lqe~L~klre~~nA----r~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~-v 217 (518)
.++..+--++.||+.|.-||..+.- ..+.-|+.+|.|+.+|..|+-.+-.-.+. .+-++|+.|+..+.+ +
T Consensus 1125 ~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~-----eitKqIsaLe~e~PKnl 1199 (1439)
T PF12252_consen 1125 SIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLV-----EITKQISALEKEKPKNL 1199 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHHHHHhhCCCch
Confidence 4455555667777777655533221 22356777777777777776655544432 356688888873332 1
Q ss_pred HHHHHHHHHHHhhhhhhhhHHhh-----------hhccchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 010079 218 MANAAMRAKIQESMGKKEDIQDQ-----------LMGSDLDGVKKESQAVWAKI-----SHLEGKVKALDEEIEALQQEV 281 (518)
Q Consensus 218 ~a~~a~ra~iq~s~~~ke~iqeq-----------~~~~eId~lKKeid~lr~kI-----Kel~~k~kal~~ei~~LqeEl 281 (518)
...-.|-..+-+.+...+-+.+. +.=..||.|+..++.+.+.+ +.++..+..+. +....++-
T Consensus 1200 tdvK~missf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme--~~tf~~q~ 1277 (1439)
T PF12252_consen 1200 TDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLNQME--VKTFEEQE 1277 (1439)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhhh
Confidence 21222222222333332222222 11156777777776665542 22222221111 11111111
Q ss_pred HHHHH---HHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc--cCHHHHHHHHHHH
Q 010079 282 NDVAE---KRDKAF------ANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK--KDVQGLKELSNSE 338 (518)
Q Consensus 282 dal~~---~rdeay------~~i~~LRkerde~n~~f~~~r~~l~karela~~--~~v~el~~~~~~e 338 (518)
.++.. -.+++- ..-..++..+-.++..|-..+...-++-+|..+ .=+..|++||..-
T Consensus 1278 ~eiq~n~~ll~~L~~tlD~S~~a~Kqk~di~kl~~~lv~kQKAYP~M~QlQ~ksealI~qLRelC~~h 1345 (1439)
T PF12252_consen 1278 KEIQQNLQLLDKLEKTLDDSDTAQKQKEDIVKLNDFLVEKQKAYPAMVQLQFKSEALIIQLRELCEAH 1345 (1439)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhhHHHHHHHHHHHHHh
Confidence 11111 111111 112345666666777777766666666666555 3578899999864
No 62
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.89 E-value=15 Score=42.06 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHH
Q 010079 183 IRSLQYRIQHEIIPLSEEKQILR 205 (518)
Q Consensus 183 I~~LE~rIqhgSLsL~EEKklLk 205 (518)
+..|..+-+.--.||.+|.+-|+
T Consensus 410 l~~L~~qWe~~R~pL~~e~r~lk 432 (594)
T PF05667_consen 410 LVELAQQWEKHRAPLIEEYRRLK 432 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 33343333444444555444444
No 63
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.49 E-value=3.1 Score=41.95 Aligned_cols=90 Identities=14% Similarity=0.251 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 213 TREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF 292 (518)
Q Consensus 213 ~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay 292 (518)
.|.++..+...++.|...++.-+.. ..-|.+.+++++.|...-....+.+..++.+|+.|..-+..+...|+...
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~e-----e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENE-----EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444332221 12467778888887777777777777777788887777777777777766
Q ss_pred HHHHHHHHHHHHHhH
Q 010079 293 ANIKELRKQRDEGNA 307 (518)
Q Consensus 293 ~~i~~LRkerde~n~ 307 (518)
..+..|..++..+..
T Consensus 81 ~~i~r~~eey~~Lk~ 95 (230)
T PF10146_consen 81 EKIQRLYEEYKPLKD 95 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666554444443
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.38 E-value=17 Score=45.72 Aligned_cols=23 Identities=4% Similarity=0.092 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQ 111 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~ 111 (518)
+.+..-|+.++..+..+..-+..
T Consensus 226 ~~v~~~i~~m~~~l~~~r~t~~~ 248 (1486)
T PRK04863 226 SGVRKAFQDMEAALRENRMTLEA 248 (1486)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 33666677777766655533333
No 65
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.11 E-value=24 Score=42.10 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHHHHH----------------HHHHHHHHH
Q 010079 282 NDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSN----------------SEVEKYMTL 345 (518)
Q Consensus 282 dal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~~~~----------------~eve~fm~~ 345 (518)
..+.+++|.+.-++.+|..+++......|.+-..+.|-|++.++-+ ..|+++.+ .+.=-|--+
T Consensus 493 ~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lq-dqlqe~~dq~~Sseees~q~~s~~~et~dyk~~ 571 (1243)
T KOG0971|consen 493 LDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQ-DQLQELTDQQESSEEESQQPPSVDPETFDYKIK 571 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHhcCCCCCchhhhHHHHH
Confidence 4577888888888899999999999999999999999999988743 12222222 122234556
Q ss_pred HhCChhhHHHHH---HHhHHHHHhhhhc
Q 010079 346 WNNNKAFRDDYE---KRLLQSLDMRQLS 370 (518)
Q Consensus 346 wn~~~~FR~dY~---k~~~~s~~~R~~~ 370 (518)
+.-+++|=++-+ +-|-.+.-+|..+
T Consensus 572 fa~skayaraie~QlrqiEv~~a~rh~~ 599 (1243)
T KOG0971|consen 572 FAESKAYARAIEMQLRQIEVAQANRHMS 599 (1243)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777766543 4455666666654
No 66
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.06 E-value=16 Score=41.11 Aligned_cols=82 Identities=17% Similarity=0.318 Sum_probs=65.1
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010079 242 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 321 (518)
Q Consensus 242 ~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~kare 321 (518)
...+|+++...++.+...+..-.--|..++..+..+.+.+..+..++..+.+++..||+.--+.....-.+++.+...+.
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888777776779999999999999999999999999999999999655555566666666655443
Q ss_pred Hh
Q 010079 322 MS 323 (518)
Q Consensus 322 la 323 (518)
+.
T Consensus 432 ~m 433 (570)
T COG4477 432 YM 433 (570)
T ss_pred HH
Confidence 33
No 67
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.94 E-value=21 Score=41.01 Aligned_cols=47 Identities=28% Similarity=0.387 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010079 268 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA 314 (518)
Q Consensus 268 kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~ 314 (518)
+.+...+..|+.++..+.......-..+..|..+++....++-+|..
T Consensus 198 keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a 244 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVA 244 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777788888888877777777654
No 68
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.65 E-value=26 Score=41.33 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 267 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 267 ~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
...+..++-.|+-.|.+.+.+-...-+.+++|-+++|.+..
T Consensus 325 nmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~ 365 (1265)
T KOG0976|consen 325 NMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALM 365 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666666666666665544
No 69
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.57 E-value=22 Score=40.22 Aligned_cols=96 Identities=11% Similarity=0.202 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhh
Q 010079 89 PKIRAKIDLTDREIQRRN--QARM---QLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRT 163 (518)
Q Consensus 89 ~~lKakI~~a~keI~kln--q~R~---~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre 163 (518)
|.+...|..++..+...+ .++. .+...+.....+-..+...|..|.......+..+....+....++..|-..+
T Consensus 78 ~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~- 156 (560)
T PF06160_consen 78 PEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHS- 156 (560)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 667777777777666322 2222 2334445555666666666666666655555555555555555554442221
Q ss_pred hhcccCCCCCCCHHHHHHHHHHHHHHHh
Q 010079 164 TNNARSGGICSSEEELDDLIRSLQYRIQ 191 (518)
Q Consensus 164 ~~nAr~~~~~~S~EEID~~I~~LE~rIq 191 (518)
-.-..+.+.|+..+..||....
T Consensus 157 ------~~~G~a~~~Le~~L~~ie~~F~ 178 (560)
T PF06160_consen 157 ------FSYGPAIEELEKQLENIEEEFS 178 (560)
T ss_pred ------hhhchhHHHHHHHHHHHHHHHH
Confidence 1234577788888888876654
No 70
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.48 E-value=17 Score=38.63 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHH
Q 010079 327 DVQGLKELSNSEVEK 341 (518)
Q Consensus 327 ~v~el~~~~~~eve~ 341 (518)
.+.+|+.+|.+=.|.
T Consensus 273 s~sdLksl~~aLle~ 287 (319)
T PF09789_consen 273 SISDLKSLATALLET 287 (319)
T ss_pred hHHHHHHHHHHHHHH
Confidence 477888888765554
No 71
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.43 E-value=8.6 Score=45.99 Aligned_cols=145 Identities=19% Similarity=0.237 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhh--hhccchhHHHHHHH
Q 010079 177 EELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQ--LMGSDLDGVKKESQ 254 (518)
Q Consensus 177 EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq--~~~~eId~lKKeid 254 (518)
.-|.++|..|+.-++ .+.+..+....|.-|++.++-|. |.... ....++... .++.++-.+.++..
T Consensus 205 ~~L~~~~~~l~kdVE----~~rer~~~~~~Ie~l~~k~~~v~-y~~~~-------~ey~~~k~~~~r~k~~~r~l~k~~~ 272 (1072)
T KOG0979|consen 205 NRLEDEIDKLEKDVE----RVRERERKKSKIELLEKKKKWVE-YKKHD-------REYNAYKQAKDRAKKELRKLEKEIK 272 (1072)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccccc-hHhhh-------HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666666666554 47778888888888887777543 22211 111112111 24456777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhhccCHHHHH
Q 010079 255 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA--YFFQYRALLNEAKAMSVKKDVQGLK 332 (518)
Q Consensus 255 ~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~--~f~~~r~~l~karela~~~~v~el~ 332 (518)
.+..++++|++.......+++.++.+++++...+.+.++++....+...++.+ ..+.+++..+..+=.-+.+++.++|
T Consensus 273 pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q 352 (1072)
T KOG0979|consen 273 PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQ 352 (1072)
T ss_pred hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999998887765 5556666655555555556666555
Q ss_pred H
Q 010079 333 E 333 (518)
Q Consensus 333 ~ 333 (518)
.
T Consensus 353 ~ 353 (1072)
T KOG0979|consen 353 A 353 (1072)
T ss_pred h
Confidence 3
No 72
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=24 Score=41.64 Aligned_cols=92 Identities=13% Similarity=0.205 Sum_probs=51.3
Q ss_pred CCccccceEEecc-------------CCCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 71 EPRVIHNFYFIRH-------------RQYDDPK----IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSL 133 (518)
Q Consensus 71 ~~~~~~~fyfvR~-------------p~pDD~~----lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaL 133 (518)
.++-.+.|||++. +.++.+. .+....+++..+.+++..+..+...+...+..-.++.-+...|
T Consensus 611 ~~k~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL 690 (970)
T KOG0946|consen 611 NTKLALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEEL 690 (970)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4566788999876 4444433 3444455555555666555555555555555555555555555
Q ss_pred HHhhHhhhHHHHHHHHhhHHHHHHHhhhh
Q 010079 134 KTEGRQYKSVMDDKRKEMEPLHQALGKLR 162 (518)
Q Consensus 134 r~q~~~~r~~~~~K~~Eik~Lqe~L~klr 162 (518)
.++...+.+......+++.-|...|+.++
T Consensus 691 ~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 691 EEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555555555555555555565444
No 73
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.16 E-value=27 Score=40.25 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccC
Q 010079 248 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKD 327 (518)
Q Consensus 248 ~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~ 327 (518)
+|.+++..+..++..++..+.....++..|+.+.+.+...-+.....-..|-.+...++..|..--..+...+....+|.
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~ 278 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGK 278 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34455555555555555555555556666666666655555544444456667777888777766566666665555554
Q ss_pred H
Q 010079 328 V 328 (518)
Q Consensus 328 v 328 (518)
+
T Consensus 279 ~ 279 (617)
T PF15070_consen 279 V 279 (617)
T ss_pred H
Confidence 3
No 74
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.11 E-value=1.5 Score=45.97 Aligned_cols=31 Identities=39% Similarity=0.667 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 010079 176 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK 216 (518)
Q Consensus 176 ~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~ 216 (518)
.++++..+..|+. ||+.+++|+..|++.+..
T Consensus 45 ~~~~~~el~~le~----------Ee~~l~~eL~~LE~e~~~ 75 (314)
T PF04111_consen 45 IEELEEELEKLEQ----------EEEELLQELEELEKEREE 75 (314)
T ss_dssp -HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 4455555555554 677777777777777665
No 75
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.11 E-value=16 Score=37.50 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHhhHhhhHHHHHHHHhhHHHHHHHh
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAA-------QLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~-------qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~ 159 (518)
..++..|+.+..+..++.-.+..+...+...+.+...... ++..++.........+.....++..|++.|.
T Consensus 57 ~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 57 RELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 4567777777777777766666666666555544444444 4444444444333344444555666665554
No 76
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.02 E-value=4.4 Score=46.60 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhh
Q 010079 125 DLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRT 163 (518)
Q Consensus 125 eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre 163 (518)
.|..++..|.....+++....+++.++..|...+.+|..
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCE 138 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888999999999999999999999999988887763
No 77
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.95 E-value=47 Score=42.61 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=22.6
Q ss_pred ChhhHHHHHHHhHHHHHhhhhccCCCCCCCCCC
Q 010079 349 NKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDEK 381 (518)
Q Consensus 349 ~~~FR~dY~k~~~~s~~~R~~~~DGR~~~pde~ 381 (518)
.+.++++|..--.+.+..=.-..+=|+|=|++.
T Consensus 1489 k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~ee 1521 (1822)
T KOG4674|consen 1489 KKELESEKEELKQRLTELAAENLKLRSRLAKEE 1521 (1822)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 345556666655566666666778889999887
No 78
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.92 E-value=13 Score=43.19 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhc--cCHHHHHHHH---HHHHHHHHH
Q 010079 297 ELRKQRDEGNAYFFQYRALLNEAKAMSVK--KDVQGLKELS---NSEVEKYMT 344 (518)
Q Consensus 297 ~LRkerde~n~~f~~~r~~l~karela~~--~~v~el~~~~---~~eve~fm~ 344 (518)
.+|..+.++..++.+.|++++...+-... .++.+|+.+| ..++|-.|+
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~ 594 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMS 594 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 45666666666666666666665543333 2344555543 234444443
No 79
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.83 E-value=25 Score=39.22 Aligned_cols=45 Identities=29% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH-HHHHHHHHHHH
Q 010079 173 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILRE-IKQLEGTREKV 217 (518)
Q Consensus 173 ~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkE-IkqLek~Rk~v 217 (518)
..+..+|+..|..+=+-.+..|++|.|-..-+.- |+.|......+
T Consensus 461 ~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~ 506 (622)
T COG5185 461 KKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKL 506 (622)
T ss_pred HHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHH
Confidence 3578899999999999999999999988776654 45555554443
No 80
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.41 E-value=50 Score=41.87 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=77.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-----HhhhhhhhhHHh---
Q 010079 172 ICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIK----QLEGTREKVMANAAMRAKI-----QESMGKKEDIQD--- 239 (518)
Q Consensus 172 ~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIk----qLek~Rk~v~a~~a~ra~i-----q~s~~~ke~iqe--- 239 (518)
+..|.++|...+...+.+++.-+-.|.+-+.-+..++ ++++....+.. ..|+| ++.. ++.+..
T Consensus 433 ~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~---~~Gkv~~~~a~~~~--~~~~~~~~~ 507 (1486)
T PRK04863 433 PDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRK---IAGEVSRSEAWDVA--RELLRRLRE 507 (1486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCcCHHHHHHHH--HHHHHHhHH
Confidence 4579999999999999998877777666655554443 33333333222 11111 1111 111100
Q ss_pred h-hhccchhHHHHHHHHHHHHH----------HHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 240 Q-LMGSDLDGVKKESQAVWAKI----------SHL--------------EGKVKALDEEIEALQQEVNDVAEKRDKAFAN 294 (518)
Q Consensus 240 q-~~~~eId~lKKeid~lr~kI----------Kel--------------~~k~kal~~ei~~LqeEldal~~~rdeay~~ 294 (518)
. .+...+..++.++.++...+ .+. ..-.......+..|.++...+.+.|...-..
T Consensus 508 ~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 587 (1486)
T PRK04863 508 QRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQ 587 (1486)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12223333333333333311 111 1112222234566666666677777777777
Q ss_pred HHHHHHHHHHHhH---HHHHHHHHHHHHHHHh
Q 010079 295 IKELRKQRDEGNA---YFFQYRALLNEAKAMS 323 (518)
Q Consensus 295 i~~LRkerde~n~---~f~~~r~~l~karela 323 (518)
+..|..++.++.. .|.++...+.+.++..
T Consensus 588 ~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~ 619 (1486)
T PRK04863 588 LEQLQARIQRLAARAPAWLAAQDALARLREQS 619 (1486)
T ss_pred HHHHHHHHHHHHHhChHHHhhHHHHHHHHHhc
Confidence 7777766665543 7788888887777643
No 81
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.39 E-value=29 Score=39.10 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 010079 274 IEALQQEVNDVAEKRDKA---FANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 324 (518)
Q Consensus 274 i~~LqeEldal~~~rdea---y~~i~~LRkerde~n~~f~~~r~~l~karela~ 324 (518)
+..+...++.+..+.+.+ -..+..|..+.+.+...|...-..+.+.|.-++
T Consensus 324 ~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a 377 (563)
T TIGR00634 324 VEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAA 377 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443332 235777888888888888877777777766443
No 82
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.29 E-value=48 Score=41.51 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010079 92 RAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLR 131 (518)
Q Consensus 92 KakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLk 131 (518)
..+|++++.+|..+......+...+..+..++..|..+..
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665555555555555555555555543
No 83
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.25 E-value=42 Score=40.74 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=69.5
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010079 242 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 321 (518)
Q Consensus 242 ~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~kare 321 (518)
+...+..+.+.++.|...|++++..+..+..++++|+...-.+..+-.++...+...+.+.......++...|.++...-
T Consensus 414 l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~ea 493 (1141)
T KOG0018|consen 414 LKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEA 493 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHH
Confidence 44566778888888999999999999999999999999999999999999999999999999999999888887776544
Q ss_pred H
Q 010079 322 M 322 (518)
Q Consensus 322 l 322 (518)
+
T Consensus 494 v 494 (1141)
T KOG0018|consen 494 V 494 (1141)
T ss_pred H
Confidence 3
No 84
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.92 E-value=2.8 Score=39.61 Aligned_cols=7 Identities=29% Similarity=0.871 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 010079 340 EKYMTLW 346 (518)
Q Consensus 340 e~fm~~w 346 (518)
.+++..|
T Consensus 155 ~~~~k~w 161 (169)
T PF07106_consen 155 KKWRKEW 161 (169)
T ss_pred HHHHHHH
Confidence 3333333
No 85
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.81 E-value=38 Score=39.52 Aligned_cols=78 Identities=31% Similarity=0.425 Sum_probs=53.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHh
Q 010079 112 LMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQ 191 (518)
Q Consensus 112 I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIq 191 (518)
+...++..|..=++|+.+|..|..-.+.++..+...+.+.+.|+..+..|. ++|. .=..-|..||.+
T Consensus 430 LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~---~aRq--------~DKq~l~~LEkr-- 496 (697)
T PF09726_consen 430 LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV---QARQ--------QDKQSLQQLEKR-- 496 (697)
T ss_pred HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--------HHHHHHHHHHHH--
Confidence 445677778888899999988888888899999998888888888775443 2211 112237777776
Q ss_pred cCCCChHHHHHHHHHH
Q 010079 192 HEIIPLSEEKQILREI 207 (518)
Q Consensus 192 hgSLsL~EEKklLkEI 207 (518)
|.+|.+.=..+
T Consensus 497 -----L~eE~~~R~~l 507 (697)
T PF09726_consen 497 -----LAEERRQRASL 507 (697)
T ss_pred -----HHHHHHHHHHH
Confidence 55555554444
No 86
>PF13514 AAA_27: AAA domain
Probab=90.80 E-value=47 Score=40.53 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV 284 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal 284 (518)
++.+..++..+...+..+...+..+..++..+..++..+
T Consensus 891 ~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l 929 (1111)
T PF13514_consen 891 PDELEAELEELEEELEELEEELEELQEERAELEQELEAL 929 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333
No 87
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.26 E-value=59 Score=40.77 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAK 119 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~ 119 (518)
.+|...|+.++.+|..+......+...+..+
T Consensus 745 ~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L 775 (1353)
T TIGR02680 745 AELDARLAAVDDELAELARELRALGARQRAL 775 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444444443333
No 88
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.21 E-value=27 Score=36.73 Aligned_cols=21 Identities=14% Similarity=0.242 Sum_probs=12.7
Q ss_pred CChHHHHHHHHHHHHHHHHHH
Q 010079 87 DDPKIRAKIDLTDREIQRRNQ 107 (518)
Q Consensus 87 DD~~lKakI~~a~keI~klnq 107 (518)
|...+..++..++.++..+..
T Consensus 75 d~~~~~~~l~~l~~~~~~l~a 95 (423)
T TIGR01843 75 DATDVEADAAELESQVLRLEA 95 (423)
T ss_pred ccchhhhHHHHHHHHHHHHHH
Confidence 555666666666666655543
No 89
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.16 E-value=4.7 Score=33.42 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010079 249 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 312 (518)
Q Consensus 249 lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~ 312 (518)
|..++..|+..+..+..++......+..|..+.+..-.....+|..+..|+.+.+.+-.++-.+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455666666666667667777777788888888888888888888888887776654443
No 90
>PRK09039 hypothetical protein; Validated
Probab=90.16 E-value=29 Score=36.97 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhh
Q 010079 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYK 141 (518)
Q Consensus 91 lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r 141 (518)
|...|...++++..++..-..+-+.+.=-+.+...+...|..++.+.....
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~ 94 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAE 94 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344555555555555544444555555556666666666766666655333
No 91
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=90.06 E-value=8 Score=37.75 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 310 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~ 310 (518)
....++..++.+..++..+...+..+...+....... .-..+|..+.+.+..|+.+...+...+-
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-EESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555553322 2226666667777777776666665544
No 92
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.00 E-value=43 Score=39.24 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=25.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhh
Q 010079 93 AKIDLTDRE-IQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQY 140 (518)
Q Consensus 93 akI~~a~ke-I~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~ 140 (518)
..+..++.+ |.+...+|..|...+..++.....-..+|..+.++...+
T Consensus 543 ~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 543 QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444 445556666666666666555555555555555544433
No 93
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.68 E-value=29 Score=36.40 Aligned_cols=56 Identities=23% Similarity=0.457 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
+|..+|.++..+...|...+..+..++.++..+..++.++.+++.++-..|.++..
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44545555544444444444444444444444444444444444444444444443
No 94
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.31 E-value=22 Score=37.52 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 252 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 252 eid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
+++.++++|+.+...+.....++..++.++..+...+....+.+.+++.++.+...
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555555555555554443
No 95
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.31 E-value=53 Score=38.91 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=9.0
Q ss_pred HHhHHHHHHHHHHHHHHhhHh
Q 010079 119 KRGVRGDLAAQLRSLKTEGRQ 139 (518)
Q Consensus 119 ~R~~R~eL~~qLkaLr~q~~~ 139 (518)
.+.-+.++-.++..+++....
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~ 682 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKE 682 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444333
No 96
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=89.06 E-value=69 Score=39.85 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 298 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~L 298 (518)
+..+..++..+..+|.+.. .....+++..|..+++.++.+...++.....+
T Consensus 1017 ~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~ 1067 (1294)
T KOG0962|consen 1017 LKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQY 1067 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 3444444444444433332 33344455555555555555555554444333
No 97
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.46 E-value=10 Score=34.12 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
.+..+...+......+.+|..+-+.+.+-++.|+.+....+....++-.+|.+++..++...-.+.+....+.+
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555556655555665555666666677777777777777777777777777776543334344444433
No 98
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.23 E-value=37 Score=35.70 Aligned_cols=87 Identities=21% Similarity=0.285 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 213 TREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF 292 (518)
Q Consensus 213 ~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay 292 (518)
.|.++..|......+++++..- +.-|...|++++.+..+|+.|+++...++.....-+.-+-.+..++...-
T Consensus 214 Lr~QL~~Y~~Kf~efq~tL~kS--------Ne~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~ 285 (309)
T PF09728_consen 214 LREQLNLYSEKFEEFQDTLNKS--------NEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLE 285 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4445555666666666655431 12478888888888888888888877777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhH
Q 010079 293 ANIKELRKQRDEGNA 307 (518)
Q Consensus 293 ~~i~~LRkerde~n~ 307 (518)
..+..|..+.+.+.+
T Consensus 286 ~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 286 KELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777776666544
No 99
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.99 E-value=47 Score=36.59 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHh
Q 010079 93 AKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (518)
Q Consensus 93 akI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~ 159 (518)
..+++.+.+|.+++.....+......+......+-..+..+..+....-..+....+.|..+...|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 6677777777776665555555555555555555555555555555555444444444544444443
No 100
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.96 E-value=51 Score=37.01 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
+..++.+++..+..|....+....+...+.+|..++...+.....+.............++......+..+..
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444443333333333333333344444433
No 101
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.87 E-value=7.5 Score=39.36 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHHH
Q 010079 255 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKEL 334 (518)
Q Consensus 255 ~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~~ 334 (518)
.++.++.++.++-.++-+++..|+.++.++++....+-.....|-..++.+-..+|..+..+....+. +
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~-----------~ 207 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG-----------V 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc-----------c
Confidence 33333333333333333334444444444444444444444445555555555555555555443321 1
Q ss_pred HHHHHHHHHHHHh
Q 010079 335 SNSEVEKYMTLWN 347 (518)
Q Consensus 335 ~~~eve~fm~~wn 347 (518)
-..+-+.||-+|.
T Consensus 208 El~e~~~i~dl~~ 220 (290)
T COG4026 208 ELPEEELISDLVK 220 (290)
T ss_pred cchHHHHHHHHHH
Confidence 2345678999995
No 102
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.81 E-value=51 Score=40.52 Aligned_cols=209 Identities=17% Similarity=0.205 Sum_probs=96.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhh
Q 010079 85 QYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTT 164 (518)
Q Consensus 85 ~pDD~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~ 164 (518)
.|+...++.+|+++.+. +..+ ...+...++ .-....++++...++...|+..+..--+++..++..|..++.
T Consensus 22 ~p~~~~iq~~l~~~~~~--~~~~-~k~~~~~l~----~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~- 93 (1109)
T PRK10929 22 APDEKQITQELEQAKAA--KTPA-QAEIVEALQ----SALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERD- 93 (1109)
T ss_pred CCCHHHHHHHHHHhhcC--CChh-hHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc-
Confidence 37778899999987662 2222 222333332 223344455555555556666666655566666666654331
Q ss_pred hcccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH---hhh
Q 010079 165 NNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQ---DQL 241 (518)
Q Consensus 165 ~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iq---eq~ 241 (518)
.......-.|..+|+.++.....+++.-.--+..+---+++|..--.+.++.. ...+..+++.-......- +..
T Consensus 94 -~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~--~~~~~~l~~i~~~L~~~~~~~~~l 170 (1109)
T PRK10929 94 -EPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQ--TEARRQLNEIERRLQTLGTPNTPL 170 (1109)
T ss_pred -ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhH--HHHHHHHHHHHHHHhCCCCCCCcc
Confidence 11211234567888888887777644333333333333333322222222111 111212222110000000 000
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 242 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 242 ~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
-......+..+...+..++..++..+...+...+-++.+++-+..+.+..-..+..|+...+.
T Consensus 171 ~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 171 AQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234455555556666655555554444444444555555555555555555555554443
No 103
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.71 E-value=66 Score=36.98 Aligned_cols=162 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 010079 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGV----RGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTN 165 (518)
Q Consensus 90 ~lKakI~~a~keI~klnq~R~~I~~alk~~R~~----R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~ 165 (518)
....++..+++.|..|...--.+...+--.+.. -....+++.-+..+....+..+.....+...|...+.+.+...
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccc
Q 010079 166 NARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSD 245 (518)
Q Consensus 166 nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~e 245 (518)
... ..++||+...-|.. .=.+=.++..+|.+++.+.-....... ..
T Consensus 273 ~~~------~~~~i~~~~~~L~~-------kd~~i~~L~~di~~~~~S~~~e~e~~~---------------------~q 318 (629)
T KOG0963|consen 273 KLA------KIDDIDALGSVLNQ-------KDSEIAQLSNDIERLEASLVEEREKHK---------------------AQ 318 (629)
T ss_pred hhc------cCCchHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAE 286 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~ 286 (518)
|..|-+++......|.+++.++... .+|+.|..+|..+++
T Consensus 319 I~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 319 ISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH
No 104
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.52 E-value=9 Score=36.22 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010079 277 LQQEVNDVAEKRDKAFANIKELR 299 (518)
Q Consensus 277 LqeEldal~~~rdeay~~i~~LR 299 (518)
|...+..+..+...+-.++..|+
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 105
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.49 E-value=7.9 Score=37.59 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=47.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 311 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~ 311 (518)
..|..+..++..++.+|+.+...+.....-+..|++|+.++.-+-+-+-.++..|..+-.++-.-|-.
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777776666554433
No 106
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.31 E-value=36 Score=34.20 Aligned_cols=90 Identities=16% Similarity=0.229 Sum_probs=68.0
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHH
Q 010079 242 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA-----YFFQYRALL 316 (518)
Q Consensus 242 ~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~-----~f~~~r~~l 316 (518)
+..++..+.++++.+...+..+...+.....++..|+.+++.+...+.++.--+...-+.+...-. ..-+....+
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl 133 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERL 133 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 344688888888888888888888888888888999988888888888888777666666655332 333456667
Q ss_pred HHHHHHhhccCHHHH
Q 010079 317 NEAKAMSVKKDVQGL 331 (518)
Q Consensus 317 ~karela~~~~v~el 331 (518)
...+.+....++.-.
T Consensus 134 ~~L~~~l~~~dv~~~ 148 (251)
T PF11932_consen 134 ARLRAMLDDADVSLA 148 (251)
T ss_pred HHHHHhhhccCCCHH
Confidence 777888888877664
No 107
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=86.12 E-value=57 Score=35.71 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=11.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhHhhh
Q 010079 115 ELRAKRGVRGDLAAQLRSLKTEGRQYK 141 (518)
Q Consensus 115 alk~~R~~R~eL~~qLkaLr~q~~~~r 141 (518)
...=...+...+..+|.....+...|+
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 108
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.08 E-value=31 Score=32.51 Aligned_cols=83 Identities=23% Similarity=0.282 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHH
Q 010079 258 AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNS 337 (518)
Q Consensus 258 ~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~~~~~ 337 (518)
+.|-.|..++..+...++.|..+++.+..+++.+-..+...+.+..++-..-..+...+..+.+- ...+.+-+.+
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e-----k~q~~e~~~~ 126 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE-----KVQLKEESKS 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 33444455555556666666666666666666666666666666666665555555555544332 4455555555
Q ss_pred HHHHHHHH
Q 010079 338 EVEKYMTL 345 (518)
Q Consensus 338 eve~fm~~ 345 (518)
.|+...+.
T Consensus 127 ~ve~L~~q 134 (140)
T PF10473_consen 127 AVEMLQKQ 134 (140)
T ss_pred HHHHHHHH
Confidence 55554443
No 109
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.07 E-value=20 Score=37.85 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=12.6
Q ss_pred HHHHHHHhhHhhhHHHHHHHHhhHHHHHHH
Q 010079 129 QLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (518)
Q Consensus 129 qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L 158 (518)
.|+.++++.......+..+..++..++..+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 110
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.23 E-value=7.6 Score=37.70 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHHH
Q 010079 255 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKEL 334 (518)
Q Consensus 255 ~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~~ 334 (518)
.++..+......+..+..++..|..++..+.....+.-..+..|++++..++-.|-.....+.+ |+.-
T Consensus 106 ~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~------------l~~E 173 (194)
T PF08614_consen 106 ELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRK------------LEEE 173 (194)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
Confidence 3333333333344444444444444444444444444445555555555555444333333333 3333
Q ss_pred HHHHHHHHHHH
Q 010079 335 SNSEVEKYMTL 345 (518)
Q Consensus 335 ~~~eve~fm~~ 345 (518)
...=|+|||..
T Consensus 174 n~~Lv~Rwm~~ 184 (194)
T PF08614_consen 174 NRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33447777764
No 111
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.99 E-value=85 Score=36.89 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=62.8
Q ss_pred HHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHH
Q 010079 128 AQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEK-QILRE 206 (518)
Q Consensus 128 ~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEK-klLkE 206 (518)
.....+.++.-.+++.+..|+++|-+|+.+|+-=+ ..+|+= +..|-.+.+++-.-..|-- ++=.|
T Consensus 583 ~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANK------------qTAEvA--LanLKsKYE~EK~~v~etm~kLRnE 648 (717)
T PF09730_consen 583 KDKEELQEQILKLKSLLSTKREQIATLRTVLKANK------------QTAEVA--LANLKSKYENEKAMVSETMMKLRNE 648 (717)
T ss_pred ccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH--HHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 34566667777788889999999999999995211 233332 6666555444332222221 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 207 IKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDE 272 (518)
Q Consensus 207 IkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ 272 (518)
.+.|+.-.-.|.+.-+|.| ..-|+.--++|++..++...+++-+.++.
T Consensus 649 LK~LKEDAATFsSlRamFa------------------~RCdEYvtQldemqrqL~aAEdEKKTLNs 696 (717)
T PF09730_consen 649 LKALKEDAATFSSLRAMFA------------------ARCDEYVTQLDEMQRQLAAAEDEKKTLNS 696 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444444432 13455566666666666666665555544
No 112
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=84.73 E-value=55 Score=34.24 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhh-----hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 202 QILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQ-----LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEA 276 (518)
Q Consensus 202 klLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq-----~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~ 276 (518)
++|..|..|+.+.+++..--.-+..-=++++. +++-+ .-+.++..|+.+...|......+...-..+.-++..
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEA--aLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~ 92 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEA--ALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQV 92 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhh
Confidence 57888888888877765321111000011111 11111 123455556666555555555555444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010079 277 LQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 310 (518)
Q Consensus 277 LqeEldal~~~rdeay~~i~~LRkerde~n~~f~ 310 (518)
-..++.-+-.+-..++..|..|-.+......++.
T Consensus 93 Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 93 KESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333333333333333
No 113
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.46 E-value=57 Score=34.25 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 250 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 250 KKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
+.++..+++.|..+..++.+.+.++..++.++..+...+.+..+.+.+|..++.++..
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666677777777777776666666666666666655443
No 114
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=84.37 E-value=58 Score=34.25 Aligned_cols=72 Identities=11% Similarity=0.213 Sum_probs=40.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 316 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l 316 (518)
.+..+...-..|+.++..-.+++..+++-++.-.+=+...+.+.+...+.+..|-++-......|-.+-..+
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l 274 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL 274 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445555555556665555555666666555555555555566666666666666555555444444444433
No 115
>PF13166 AAA_13: AAA domain
Probab=84.29 E-value=83 Score=35.99 Aligned_cols=12 Identities=0% Similarity=0.016 Sum_probs=7.3
Q ss_pred CCChHHHHHHHH
Q 010079 86 YDDPKIRAKIDL 97 (518)
Q Consensus 86 pDD~~lKakI~~ 97 (518)
|.++..+.+|..
T Consensus 265 ~l~~~~~~~l~~ 276 (712)
T PF13166_consen 265 PLSEERKERLEK 276 (712)
T ss_pred CCcHHHHHHHHH
Confidence 345666666665
No 116
>PRK11281 hypothetical protein; Provisional
Probab=84.22 E-value=1.2e+02 Score=37.61 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=48.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 010079 86 YDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTN 165 (518)
Q Consensus 86 pDD~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~ 165 (518)
|+...++.+|+++.+. .........++..++.. ..+.++++...++...++..+..--.+++..+..|..++...
T Consensus 36 p~~~~iq~~l~~~~~~-~~~~~~~k~~~~~l~~t----L~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~ 110 (1113)
T PRK11281 36 PTEADVQAQLDALNKQ-KLLEAEDKLVQQDLEQT----LALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDN 110 (1113)
T ss_pred CCHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccc
Confidence 6667788888876552 11111111122222211 122222333333333333333333333444444444333211
Q ss_pred cc--cCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHH
Q 010079 166 NA--RSGGICSSEEELDDLIRSLQYRIQHEIIPLSEE 200 (518)
Q Consensus 166 nA--r~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EE 200 (518)
.. .......|..+|+.++.+++..++...-.|.+.
T Consensus 111 ~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 111 DEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111245677788888888888666544444433
No 117
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.94 E-value=13 Score=37.64 Aligned_cols=65 Identities=22% Similarity=0.355 Sum_probs=48.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 243 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 243 ~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
+..|+++.++..+|+..+.++..++.++++.+..|..++.-+...++.+-.+.-.|++..+++..
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 44567777777777777777777777777777777777777777777777777777777777654
No 118
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=83.94 E-value=0.33 Score=55.94 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
.+..+++++..+..++.+...+...+.-++..|.+++.++...++.+...+..|+...+++
T Consensus 364 qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL 424 (713)
T PF05622_consen 364 QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEEL 424 (713)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666665555555555555555666666666666666666666666666544443
No 119
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.83 E-value=14 Score=37.13 Aligned_cols=60 Identities=13% Similarity=0.331 Sum_probs=39.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
+.+.++.++..++.++.....+++..+++...|.++.+.+..+-|.+.++=..|+++.+-
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 455556666666666666666666666777777777777777777777777777776653
No 120
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=83.65 E-value=50 Score=35.14 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010079 267 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 309 (518)
Q Consensus 267 ~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f 309 (518)
+.+++..+..|+-++.++.++..++..+++..+.+.+.+|.++
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555543
No 121
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.38 E-value=28 Score=35.20 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 247 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
+.|-.+....-..|..+...+..+...|.....+.+........+|....-|+.+.|++..
T Consensus 42 ~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 42 EELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444455555555555555555555666666666666555443
No 122
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=83.36 E-value=7 Score=34.10 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 249 VKKESQAVWAKISHLEGKVKALDE---EIEALQQEVNDVAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 249 lKKeid~lr~kIKel~~k~kal~~---ei~~LqeEldal~~~rdeay~~i~~LRkerd 303 (518)
+..+++.++++.+.+.+++..+.. +...|..+...++.+...+-..+..+..+++
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333332 2444444444444444444444444444433
No 123
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.27 E-value=49 Score=32.58 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=12.5
Q ss_pred HHHHHHHhhHHHHHHHhhhh
Q 010079 143 VMDDKRKEMEPLHQALGKLR 162 (518)
Q Consensus 143 ~~~~K~~Eik~Lqe~L~klr 162 (518)
.+....+++..|+..|++..
T Consensus 62 ll~~h~eEvr~Lr~~LR~~q 81 (194)
T PF15619_consen 62 LLQRHNEEVRVLRERLRKSQ 81 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777666544
No 124
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.20 E-value=40 Score=31.52 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=15.5
Q ss_pred HHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHH
Q 010079 119 KRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLH 155 (518)
Q Consensus 119 ~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lq 155 (518)
+|.+.....++...+.++.+.+......+-.+|.+|+
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~ 41 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQ 41 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443333
No 125
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=82.97 E-value=1.3e+02 Score=37.29 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHHHH
Q 010079 175 SEEELDDLIRSLQYR 189 (518)
Q Consensus 175 S~EEID~~I~~LE~r 189 (518)
+.+.+...-++|+-+
T Consensus 537 ~~~kv~~~rk~le~~ 551 (1317)
T KOG0612|consen 537 SLEKVNSLRKQLEEA 551 (1317)
T ss_pred HHhhHHHHHHHHHHh
Confidence 344444444444443
No 126
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.74 E-value=45 Score=31.74 Aligned_cols=59 Identities=29% Similarity=0.383 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
|.-+|.++..+...+..+...+......+..+.+++..++..|+.+......|+.+-.-
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~ 137 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGL 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56677888888888888888888888999999999999999999999999999877644
No 127
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.61 E-value=15 Score=33.56 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhh
Q 010079 92 RAKIDLTDREIQRRNQARMQLMDEL----------RAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (518)
Q Consensus 92 KakI~~a~keI~klnq~R~~I~~al----------k~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~kl 161 (518)
..++..++.++..+...|+.+.+++ +....+...|..+++.|.......-..+++|.++...|+.-+..+
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3455566666666767776666655 233444455556666666666666666666666666666655544
Q ss_pred h
Q 010079 162 R 162 (518)
Q Consensus 162 r 162 (518)
+
T Consensus 109 K 109 (120)
T PF12325_consen 109 K 109 (120)
T ss_pred H
Confidence 4
No 128
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.59 E-value=90 Score=34.44 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHH----hhhhhh
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL----GKLRTT 164 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L----~klre~ 164 (518)
..+...|....+.|..-.+.+.++...++....+-..+..+|.........++..+..-...++.|+..- +.|..+
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~ 120 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQ 120 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888877777777777777666666666666665555555544444444333333333222 122222
Q ss_pred hcc--cC-CCC----CCCHHHHH--HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 010079 165 NNA--RS-GGI----CSSEEELD--DLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVM 218 (518)
Q Consensus 165 ~nA--r~-~~~----~~S~EEID--~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~ 218 (518)
-++ ++ ..+ -.|.++.. .++..+...|.++ ....|..|.+.+..+.
T Consensus 121 L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~---------~~~~i~~l~~~~~~l~ 174 (420)
T COG4942 121 LAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPA---------RAERIDALKATLKQLA 174 (420)
T ss_pred HHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHH---------HHHHHHHHHHHHHHHH
Confidence 222 22 122 35677766 4555555555543 4566666776666544
No 129
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=81.52 E-value=0.45 Score=54.04 Aligned_cols=67 Identities=18% Similarity=0.353 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKAL--------DEEIEALQQEVNDVAEKRDKAFANI-KELRKQRDEGNAYFF 310 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal--------~~ei~~LqeEldal~~~rdeay~~i-~~LRkerde~n~~f~ 310 (518)
..++.++.++..||..+..-.+..... ..-|+.+..|++-+...+......+ ..+|.++.++++..|
T Consensus 228 ~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~ 303 (619)
T PF03999_consen 228 EKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCH 303 (619)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 467778888888888776554443321 2357777888887777766655553 667777777665443
No 130
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.10 E-value=15 Score=32.09 Aligned_cols=62 Identities=24% Similarity=0.456 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEAL 277 (518)
Q Consensus 201 KklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~L 277 (518)
+.++.++..|+..|+.++.-.+ ..+.. +...+.++.+...+..+|+.++..+..+..++..+
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~------~~~~~---------~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIG------KLKKA---------GEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHCHT---------TCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH------HHhhC---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999998663221 11111 23456666666666665555555555555544443
No 131
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=80.47 E-value=55 Score=31.40 Aligned_cols=83 Identities=20% Similarity=0.335 Sum_probs=47.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH--------------HHHHHH
Q 010079 243 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA--------EKRDKAFAN--------------IKELRK 300 (518)
Q Consensus 243 ~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~--------~~rdeay~~--------------i~~LRk 300 (518)
+.+++.+++++..++..+..+.+..+.+..........|..+. ..+-+||+. -..||.
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~ 105 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRE 105 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777777777666666555555443333333332222 223334433 456777
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhc
Q 010079 301 QRDEGNAYFFQYRALLNEAKAMSVK 325 (518)
Q Consensus 301 erde~n~~f~~~r~~l~karela~~ 325 (518)
.||.+-..+.+....+..|..++.+
T Consensus 106 rRD~LErrl~~l~~tierAE~l~sq 130 (159)
T PF05384_consen 106 RRDELERRLRNLEETIERAENLVSQ 130 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666554
No 132
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=80.41 E-value=15 Score=29.46 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 252 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 297 (518)
Q Consensus 252 eid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~ 297 (518)
+++.|-+.+..|..++..|..+++.|+.+...++++=..+...|+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555666666666666555555555543
No 133
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=80.38 E-value=1.3e+02 Score=35.47 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 247 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
+.++.++..+..++..+......-++.+..|+.++..+...-.+....|+..++++-....
T Consensus 394 ~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSE 454 (717)
T PF09730_consen 394 DRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSE 454 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555667777777777777777666666666665554443
No 134
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=79.56 E-value=34 Score=35.49 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 306 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n 306 (518)
|..-+.+++-.+..+..|..---+.-++|..|..||..+++.-=..|-++.-|..+.+..+
T Consensus 199 Iekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~ 259 (267)
T PF10234_consen 199 IEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYN 259 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333334443333344443334445556666666666666666666666666666666544
No 135
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.54 E-value=67 Score=31.68 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010079 270 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA 314 (518)
Q Consensus 270 l~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~ 314 (518)
++..+..+.+++..+.-+-+.+......|..+||+++..|-....
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ 135 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQ 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443333
No 136
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.20 E-value=56 Score=30.58 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHHH
Q 010079 175 SEEELDDLIRSLQYR 189 (518)
Q Consensus 175 S~EEID~~I~~LE~r 189 (518)
..+-+.++|..||..
T Consensus 74 ~~E~l~rriq~LEee 88 (143)
T PF12718_consen 74 NAEQLNRRIQLLEEE 88 (143)
T ss_pred hHHHHHhhHHHHHHH
Confidence 344566666666663
No 137
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.12 E-value=1.5e+02 Score=35.47 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 010079 176 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK 216 (518)
Q Consensus 176 ~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~ 216 (518)
..+|..+...|+..+++- +.......+=..++.|...+..
T Consensus 602 ~~~l~~~~~~l~~~~~~~-~~~~~~~e~~~~~~~l~~~~~~ 641 (908)
T COG0419 602 LKELEERLSQLEELLQSL-ELSEAENELEEAEEELESELEK 641 (908)
T ss_pred HHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666 3333344444444444444444
No 138
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.48 E-value=38 Score=28.31 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 266 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQ 301 (518)
Q Consensus 266 k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRke 301 (518)
+..++..+...|..+...+...++..+.+|+.|=..
T Consensus 33 ~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 33 KNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444455555555555555555544443
No 139
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.36 E-value=63 Score=32.36 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010079 273 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 317 (518)
Q Consensus 273 ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~ 317 (518)
++..++..+..+...++.....+..+|...+++.......+..+.
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443333
No 140
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.93 E-value=20 Score=35.57 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 271 DEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 271 ~~ei~~LqeEldal~~~rdeay~~i~~LRkerd 303 (518)
+..++.|..+...+..+-..+-+++..|..+.+
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333
No 141
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=77.76 E-value=16 Score=35.55 Aligned_cols=71 Identities=30% Similarity=0.483 Sum_probs=45.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010079 243 GSDLDGVKKESQAVWAKISHLEGKVKA-----LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 317 (518)
Q Consensus 243 ~~eId~lKKeid~lr~kIKel~~k~ka-----l~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~ 317 (518)
..+|..+++++..|+.+|..|..+... ++.++++|.-||+++..++.. ..+.=||++.+.+.
T Consensus 104 ~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~-------------~emeLyyecMkkL~ 170 (181)
T PF04645_consen 104 NLELKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREI-------------REMELYYECMKKLA 170 (181)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHh
Confidence 346777777777777777766655433 334555555555555554443 44567889999888
Q ss_pred HHHHHhhcc
Q 010079 318 EAKAMSVKK 326 (518)
Q Consensus 318 karela~~~ 326 (518)
+|-+...++
T Consensus 171 ~a~~~esk~ 179 (181)
T PF04645_consen 171 KAHEVESKS 179 (181)
T ss_pred hhhhhhhcc
Confidence 887766554
No 142
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=77.71 E-value=1.3e+02 Score=33.91 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=23.7
Q ss_pred HHHHhHHHHHHHHHHHHHHhhHh-------hhHHHHHHHHhhHHHHHHHhhhh
Q 010079 117 RAKRGVRGDLAAQLRSLKTEGRQ-------YKSVMDDKRKEMEPLHQALGKLR 162 (518)
Q Consensus 117 k~~R~~R~eL~~qLkaLr~q~~~-------~r~~~~~K~~Eik~Lqe~L~klr 162 (518)
++++..-..+.+-++++.++.+. +...+..|-.||+.|++.++.|+
T Consensus 305 r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~ 357 (622)
T COG5185 305 RALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELH 357 (622)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33344444444444555444332 34455566666777776665444
No 143
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=77.31 E-value=99 Score=32.40 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=30.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
.|..-|.++.-.|..+..|..---+.-++|..-.++|..+++.-=.-|-++.-|+.+++-.
T Consensus 141 Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~ 201 (338)
T KOG3647|consen 141 KIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDR 201 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3443344444443333333323333334555555666666665555666666666666543
No 144
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=77.23 E-value=15 Score=31.36 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHH
Q 010079 95 IDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRK 149 (518)
Q Consensus 95 I~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~ 149 (518)
|.-++-+|.+|+..-..+.......+..|.+|..+...|++++..+...+.+.+.
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667778888888888888888999999999999999988888755444433
No 145
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.87 E-value=1.5e+02 Score=34.39 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=18.0
Q ss_pred HHHHHHHHhhHhhhHHHHHHHHhhHHHHHHH
Q 010079 128 AQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (518)
Q Consensus 128 ~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L 158 (518)
.+|..+..+....+..+.......+.++..+
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666655555555555555555
No 146
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=76.80 E-value=70 Score=30.42 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALD--------------EEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 310 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~--------------~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~ 310 (518)
.|+.++-+-..+..+|.+-...+..++ ..+..+..++..+..........+..+|++.......--
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455444455555444444433333 344444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhCChhhHHHH
Q 010079 311 QYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDY 356 (518)
Q Consensus 311 ~~r~~l~karela~~~~v~el~~~~~~eve~fm~~wn~~~~FR~dY 356 (518)
..+....+.+.-..--.+..|=.-|...++..-.++..=..+|..+
T Consensus 123 k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~ 168 (177)
T PF13870_consen 123 KLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKV 168 (177)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443322222445565556666666666665555555544
No 147
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=75.82 E-value=19 Score=30.72 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhh
Q 010079 126 LAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLR 162 (518)
Q Consensus 126 L~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klr 162 (518)
++.++..++.+...+...+.....+++.+..++..|.
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333
No 148
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=75.37 E-value=1.3e+02 Score=32.86 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 86 YDDPKIRAKIDLTDREIQRRNQARMQLMD 114 (518)
Q Consensus 86 pDD~~lKakI~~a~keI~klnq~R~~I~~ 114 (518)
.|+..+.+.+..++..+..+......+..
T Consensus 90 ld~~~~~~~~~~~~~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 90 YDNGNEENQKQLLEQQLDNLKDQKKSLDT 118 (457)
T ss_pred ECchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888777777666655554433
No 149
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=75.34 E-value=1.3e+02 Score=32.85 Aligned_cols=24 Identities=4% Similarity=0.141 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQL 112 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I 112 (518)
..+..++..++..+..|...+..+
T Consensus 100 ~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 100 QLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888887777654
No 150
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.30 E-value=1.8e+02 Score=36.21 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=20.6
Q ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhCChhh
Q 010079 315 LLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAF 352 (518)
Q Consensus 315 ~l~karela~~~~v~el~~~~~~eve~fm~~wn~~~~F 352 (518)
.-....++++.-+..-++++.+.+-.-|=.+-+|++..
T Consensus 1319 ~~~s~~~l~s~~~~sR~e~l~~k~k~~f~~~~~n~~~L 1356 (1758)
T KOG0994|consen 1319 VDASSRELASLVDQSRVEELLVKQKGDFGGLAENSRLL 1356 (1758)
T ss_pred hhhhhhcccchhhhhHHHHHHHHhhhcccccccccHHH
Confidence 33344555555555555666666655565555555444
No 151
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.19 E-value=46 Score=27.62 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 260 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 260 IKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
+..|...+..+.-++...+..++.|..+||.+...+...+.+.+++
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~L 52 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKL 52 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444444443333333333
No 152
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.87 E-value=19 Score=35.87 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=5.5
Q ss_pred CCCCCccee
Q 010079 30 GPVKDESII 38 (518)
Q Consensus 30 ~~~~~~~i~ 38 (518)
+||.+=+|+
T Consensus 39 GPg~~y~Iv 47 (206)
T PRK10884 39 GPGDQYRIV 47 (206)
T ss_pred CCCCCCceE
Confidence 666666665
No 153
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=74.81 E-value=1.1e+02 Score=31.78 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 010079 331 LKELSNSEVEKYM 343 (518)
Q Consensus 331 l~~~~~~eve~fm 343 (518)
|+.++..=|++|-
T Consensus 234 L~~lY~~Y~~kfR 246 (267)
T PF10234_consen 234 LQKLYEIYVEKFR 246 (267)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444344443
No 154
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=74.70 E-value=86 Score=30.64 Aligned_cols=83 Identities=20% Similarity=0.376 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhCC
Q 010079 270 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNN 349 (518)
Q Consensus 270 l~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~~~~~eve~fm~~wn~~ 349 (518)
+...+.......++|......+-..+..|+.++......|+.... .+-.|+.+|=.++|.||-.=
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~---------------~~~~y~~~eh~rll~LWr~v 150 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE---------------NFNQYLSSEHSRLLSLWREV 150 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHhhhcccccHHHHHHHHH
Confidence 333444444444444444445445555555555544444443333 35568888999999999999
Q ss_pred hhhHHHHHHHhHHHHHhhhh
Q 010079 350 KAFRDDYEKRLLQSLDMRQL 369 (518)
Q Consensus 350 ~~FR~dY~k~~~~s~~~R~~ 369 (518)
-.||..|.. +++.-.|=|
T Consensus 151 ~~lRr~f~e--lr~~TerdL 168 (182)
T PF15035_consen 151 VALRRQFAE--LRTATERDL 168 (182)
T ss_pred HHHHHHHHH--HHHHHHhhH
Confidence 999999987 666555543
No 155
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=74.58 E-value=75 Score=31.18 Aligned_cols=7 Identities=43% Similarity=1.108 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 010079 340 EKYMTLW 346 (518)
Q Consensus 340 e~fm~~w 346 (518)
.++..+|
T Consensus 162 ~~~~~~w 168 (201)
T KOG4603|consen 162 QKYCKEW 168 (201)
T ss_pred HHHHHHH
Confidence 4444555
No 156
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=74.56 E-value=2.3e+02 Score=35.35 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010079 270 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAM 322 (518)
Q Consensus 270 l~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karel 322 (518)
....+.+++++..++-..-..+...+.+|-....++...+-++-.....+...
T Consensus 1596 a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~ 1648 (1758)
T KOG0994|consen 1596 AQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKT 1648 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33445556666666666666666666666666666655555555544444443
No 157
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.35 E-value=51 Score=34.71 Aligned_cols=56 Identities=23% Similarity=0.518 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
++..+.++...+...+..++.+...+..++..|+.+...+..+....+...+.+.-
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~ 106 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQL 106 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555554444444444443
No 158
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=74.33 E-value=1.2e+02 Score=32.06 Aligned_cols=154 Identities=17% Similarity=0.223 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 197 LSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEA 276 (518)
Q Consensus 197 L~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~ 276 (518)
..+|||+..|++.-++.|-... ..-..+... +.+.+ .-..||..|..+..|.++|.-....+.++...|+.
T Consensus 91 yaWEKKLY~EVKa~E~~r~~ye---KK~~~Lr~~-d~kg~-----~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I~k 161 (312)
T PF04782_consen 91 YAWEKKLYDEVKAEEKLRIEYE---KKCKQLRKQ-DAKGA-----DSSKIDKTRASVKDLHTRIRVAIQSVDSISKRIEK 161 (312)
T ss_pred HHHHHHHHHHHHccHHHHHHHH---HHHHHHHHH-HhCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999888887533 222222221 11111 12357888888888888888887788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHhhc---cCHHHHHHHHHHHHHHHHHHHhCC
Q 010079 277 LQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRA----LLNEAKAMSVK---KDVQGLKELSNSEVEKYMTLWNNN 349 (518)
Q Consensus 277 LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~----~l~karela~~---~~v~el~~~~~~eve~fm~~wn~~ 349 (518)
|.++ ++|-.|.+|-.-.-.++..-+++=. .+..++-+... .-..+.....-.|.|.-+..|+..
T Consensus 162 LRDe---------EL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~~s 232 (312)
T PF04782_consen 162 LRDE---------ELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWHSS 232 (312)
T ss_pred HHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 7664 7888888888888888775555433 34444433222 355677777777788888888765
Q ss_pred h----hhHHHHHHHhHHHHHhhhh
Q 010079 350 K----AFRDDYEKRLLQSLDMRQL 369 (518)
Q Consensus 350 ~----~FR~dY~k~~~~s~~~R~~ 369 (518)
. ..=++|++.. .+-.++-+
T Consensus 233 F~~~i~~Qk~YV~aL-n~WL~~~l 255 (312)
T PF04782_consen 233 FCKWIKAQKSYVKAL-NGWLKLCL 255 (312)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhc
Confidence 4 4567898854 44455554
No 159
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=74.14 E-value=1.5e+02 Score=32.91 Aligned_cols=93 Identities=18% Similarity=0.312 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHH
Q 010079 175 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQ 254 (518)
Q Consensus 175 S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid 254 (518)
|++++..+...|.+ ||++++++++.|++....+-. .|.+++.+..
T Consensus 177 ~~~~~~~e~~~l~~----------eE~~L~q~lk~le~~~~~l~~-------------------------~l~e~~~~~~ 221 (447)
T KOG2751|consen 177 SEEDLLKELKNLKE----------EEERLLQQLEELEKEEAELDH-------------------------QLKELEFKAE 221 (447)
T ss_pred chHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHH
Confidence 78888888888877 899999999999998776431 2233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 255 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 255 ~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
.+..+-...-+++....-..-..+++++.|..+|.-+-..++.|++.-
T Consensus 222 ~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 222 RLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333344444444556678999999999999999999998864
No 160
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.87 E-value=1e+02 Score=30.86 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010079 281 VNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 321 (518)
Q Consensus 281 ldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~kare 321 (518)
+..+..+-+.+...|..+|..++.....|-.-|+.+..=++
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKe 173 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKE 173 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777888888888888888888877554
No 161
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.69 E-value=28 Score=29.06 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
.|..|..+-..|..+--.+...++.++..+..+..++..+....+.+-..+..|+...
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666665555555556666666666666666666666666666666666543
No 162
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.01 E-value=1.2e+02 Score=31.46 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHH
Q 010079 95 IDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (518)
Q Consensus 95 I~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L 158 (518)
|+..+..|..+...-..|-..+..+-..-.++..+++.+..+....+..+..-..+|+.+.+.|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555554544444554444444
No 163
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.93 E-value=1.2e+02 Score=31.49 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHH
Q 010079 175 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQ 254 (518)
Q Consensus 175 S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid 254 (518)
|.++|...+.-|-+ |..--+.+.+=+..|.||......+..-.. ....++. ....|...+.+++
T Consensus 147 S~~dl~e~~~~l~D-Lesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~----------~e~eke~-----~~r~l~~~~~ELe 210 (269)
T PF05278_consen 147 SESDLKEMIATLKD-LESAKVKVDWLRSKLEEILEAKEIYDQHET----------REEEKEE-----KDRKLELKKEELE 210 (269)
T ss_pred hHHHHHHHHHHHHH-HHHcCcchHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH-----HHHHHHHHHHHHH
Confidence 34444444444433 333445566666667777666555443110 1111111 1224666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 255 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 255 ~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
.+...++..+++++.++..+......|-.+..++-.+.+.+..++.+.+.
T Consensus 211 ~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 211 ELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777776665543
No 164
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=72.24 E-value=1.2e+02 Score=30.80 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 278 QQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 278 qeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
..+...+......+|....+|.....++...|-..-..+.+
T Consensus 240 ~~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~ 280 (296)
T PF13949_consen 240 QKERESALQRLEAAYDAYKELSSNLEEGLKFYNDLLEILNK 280 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555566666667777777777777776644444443333
No 165
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=71.83 E-value=2.5e+02 Score=34.47 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhh
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQY 140 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~ 140 (518)
-.+...|+.+++.|..|.+.=-.=.+-+...|.+.+.+-.++..|++++..+
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667666665544432211111222333444444444444444444443
No 166
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.61 E-value=2.5e+02 Score=34.51 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=38.6
Q ss_pred CCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHh
Q 010079 86 YDD---PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (518)
Q Consensus 86 pDD---~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~ 159 (518)
||+ +.|+.+=+.+..+|.++...|. .+......+..|-..|+-++-+..+.+..+.....|+..+.+.+.
T Consensus 649 wdek~~~~L~~~k~rl~eel~ei~~~~~----e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~ 721 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKERLLEELKEIQKRRK----EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEID 721 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 676 4566666777777776666333 334444445555555555555555555444455555555554443
No 167
>PRK10869 recombination and repair protein; Provisional
Probab=71.26 E-value=1.9e+02 Score=32.84 Aligned_cols=66 Identities=11% Similarity=-0.010 Sum_probs=40.2
Q ss_pred HHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 010079 118 AKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQY 188 (518)
Q Consensus 118 ~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~ 188 (518)
..+..-+....+++.+..+...+........++++-|+-.+..|...+ ..+.-.++|..++..|.+
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~-----l~~gE~eeL~~e~~~L~n 219 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFA-----PQPGEFEQIDEEYKRLAN 219 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC-----CCCCcHHHHHHHHHHHHH
Confidence 456666677777777777777776666666666666666666555221 134455556665555543
No 168
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=71.13 E-value=95 Score=29.36 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010079 199 EEKQILREIKQLEGTREKVMA 219 (518)
Q Consensus 199 EEKklLkEIkqLek~Rk~v~a 219 (518)
|||+-.+|+..|......+..
T Consensus 31 E~KRgdRE~~~L~~~~~~~~e 51 (145)
T PF14942_consen 31 EEKRGDREVRVLENLTEMISE 51 (145)
T ss_pred HHccCcHHHHHHHHHHHHHHH
Confidence 578889999999998887653
No 169
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.04 E-value=61 Score=27.13 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 256 VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 256 lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
|..+|..+-+.+..++.++..|.++..++...+..+......|+.++
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444333
No 170
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.32 E-value=2.1e+02 Score=32.96 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=21.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhh
Q 010079 471 EGMERKRKKEEAKVAKAALRAEKQRK 496 (518)
Q Consensus 471 ~a~eRKkk~aeKa~akA~~raqkea~ 496 (518)
.+++|+-++.|+-+|=+...++++-+
T Consensus 357 ~~~er~~~l~e~v~al~rlq~~~d~k 382 (772)
T KOG0999|consen 357 EQRERVDRLTEHVQALRRLQDSKDKK 382 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhh
Confidence 47889999999999988888888774
No 171
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=69.45 E-value=49 Score=26.63 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRD 289 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rd 289 (518)
|+.|-.++..|.+++..|...+..++.++...++|-.-++..+|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555555555444
No 172
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.43 E-value=41 Score=28.09 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 255 AVWAKISHLEGKVKALDEEIEALQQEVND 283 (518)
Q Consensus 255 ~lr~kIKel~~k~kal~~ei~~LqeElda 283 (518)
..++.|+.|+.....+...+..+...+..
T Consensus 30 ~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 30 KLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 173
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=69.38 E-value=1.1e+02 Score=29.22 Aligned_cols=55 Identities=18% Similarity=0.384 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 299 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LR 299 (518)
+++.+...+..+...+..+++.+...........++++.+..........+..|+
T Consensus 96 el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 96 ELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433334444444444444444444444444444
No 174
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=69.07 E-value=90 Score=28.29 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHHHhhhhccCCCCCCCCC
Q 010079 330 GLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPDE 380 (518)
Q Consensus 330 el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR~~~pde 380 (518)
--...|..-..+|...++.=-.-..+|..+. .....|+ -++.|||-
T Consensus 85 ~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~-k~~i~Rq----~~i~~~~~ 130 (151)
T cd00179 85 IRKTQHSGLSKKFVEVMTEFNKAQRKYRERY-KERIQRQ----LEITGGEA 130 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHcCCCC
Confidence 3344555555666666655555555555544 3333444 24555553
No 175
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=69.02 E-value=26 Score=29.74 Aligned_cols=49 Identities=22% Similarity=0.414 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 010079 255 AVWAKISHLEGKVKALDEEIEALQQEVND---VAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 255 ~lr~kIKel~~k~kal~~ei~~LqeElda---l~~~rdeay~~i~~LRkerd 303 (518)
.+|+.|+++.++..+++..++.|..-+.. ++.+.|..-..+..|-.+..
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~ 59 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVN 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666555555444333 44444444444444444333
No 176
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=68.88 E-value=1.1e+02 Score=29.58 Aligned_cols=54 Identities=13% Similarity=0.294 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 010079 270 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMS 323 (518)
Q Consensus 270 l~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela 323 (518)
+..+...|..++..+..+...+-+++..|..+......+|......+..||.++
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455555555555666666666666666655
No 177
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.54 E-value=2.2e+02 Score=32.61 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=13.2
Q ss_pred HHHHHHHhhHhhhHHHHHHHHhhHHHHHHH
Q 010079 129 QLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (518)
Q Consensus 129 qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L 158 (518)
++..++.....-+.-+..+.+-|+.|.+.|
T Consensus 251 t~~~~e~riEtqkqtl~ardesIkkLlEmL 280 (654)
T KOG4809|consen 251 TDPSGEQRIETQKQTLDARDESIKKLLEML 280 (654)
T ss_pred cCchHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 333333333333334444444555555554
No 178
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=68.48 E-value=1.9e+02 Score=31.73 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L 158 (518)
+.++.+++.++..+..+... ..+.. + .....+..++..+..+....+..+......+..|+..+
T Consensus 171 ~~~~~~L~~ae~~l~~f~~~-~~~~~---~--~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 171 KTYEKKLEAAENRLKAFKQE-NGGIL---P--DQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CcccC---c--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555544322 12211 0 11123444455555555555555555555555555544
No 179
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.32 E-value=21 Score=27.23 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 263 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 263 l~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
++..+..++..|+.|..+.+.+..+.+.+-..+..|+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555544444
No 180
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=66.10 E-value=1.9 Score=50.94 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALD 271 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~ 271 (518)
.+++++.-+++..++....+.++.+.++
T Consensus 356 ~EleDl~~eLe~~~~~~~~LeKKqr~fD 383 (859)
T PF01576_consen 356 GELEDLTSELEKAQAAAAELEKKQRKFD 383 (859)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445455555555444444444433333
No 181
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.49 E-value=3e+02 Score=32.99 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010079 277 LQQEVNDVAEKRDKAFANIKELR 299 (518)
Q Consensus 277 LqeEldal~~~rdeay~~i~~LR 299 (518)
+..++..+..+.+.+..++..+.
T Consensus 693 ~~~el~~~~~~l~~~~~~~~~~~ 715 (908)
T COG0419 693 LEEELEQLREELEELLKKLGEIE 715 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555533
No 182
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.25 E-value=2.8e+02 Score=32.52 Aligned_cols=62 Identities=15% Similarity=0.303 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALD---------------EEIEALQQEVNDVAEKRDKAFAN-IKELRKQRDEGNA 307 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~---------------~ei~~LqeEldal~~~rdeay~~-i~~LRkerde~n~ 307 (518)
+..+.-++..||+.+..-.++..... +-|..+..|++-+.+-+..-.+. |...|.++.+++.
T Consensus 249 l~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel~~ 326 (660)
T KOG4302|consen 249 LQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRSELEELWR 326 (660)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 55566666666665544333322221 12333345554444433333322 4556666666664
No 183
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=64.76 E-value=1.6e+02 Score=29.47 Aligned_cols=76 Identities=26% Similarity=0.318 Sum_probs=41.0
Q ss_pred HHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcc--cCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 010079 131 RSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNA--RSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREI 207 (518)
Q Consensus 131 kaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nA--r~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEI 207 (518)
+........|+..+..-=.++..++..|..++.. .. .....-.|.++|..+|......+..-.-.|.+..-.|..|
T Consensus 34 ~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~-~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~ 111 (240)
T PF12795_consen 34 KKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ-DAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEI 111 (240)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc-ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444455566666666655432 11 2223357888898888887776665444444444444444
No 184
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=64.63 E-value=24 Score=28.25 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 261 SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI 295 (518)
Q Consensus 261 Kel~~k~kal~~ei~~LqeEldal~~~rdeay~~i 295 (518)
.+++.++..+...++.++.+...+....+++-.++
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555444444
No 185
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=64.50 E-value=1.4e+02 Score=29.93 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 206 EIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVA 285 (518)
Q Consensus 206 EIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~ 285 (518)
||+=|+.+++..-+=.+. +..+|-.||..+...++.+......+..+...+..-..++....
T Consensus 11 EIsLLKqQLke~q~E~~~------------------K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce 72 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQ------------------KDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCE 72 (202)
T ss_pred hHHHHHHHHHHHHHHHHH------------------HHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhH
Confidence 688888887763321111 22345555555555555555544444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010079 286 EKRDKAFANIKELRKQRDEGNAYFFQYRALLN 317 (518)
Q Consensus 286 ~~rdeay~~i~~LRkerde~n~~f~~~r~~l~ 317 (518)
.+.+..-....-||.+...+..++...|..+.
T Consensus 73 ~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 73 NELQRKKNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 44444444444444444444444444333333
No 186
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=64.31 E-value=3.5e+02 Score=33.31 Aligned_cols=58 Identities=19% Similarity=0.282 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 247 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
+.+.++...++++|+.+.+.+..-..++..|....+.+..+....-.....+..+..+
T Consensus 477 ~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~ee 534 (1195)
T KOG4643|consen 477 DQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEE 534 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666665555555555555555555555544444444444443333
No 187
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.82 E-value=79 Score=36.40 Aligned_cols=75 Identities=16% Similarity=0.340 Sum_probs=34.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVK---ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 320 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~k---al~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~kar 320 (518)
..|.++++++..|++++..+...+. -.+.+|..+..+...|..+..+.+..+..|...+.. +.+++
T Consensus 443 ~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~-----------l~k~~ 511 (652)
T COG2433 443 RELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE-----------LRKMR 511 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 3455555555555555555543322 011233344444444444444444444444443333 23455
Q ss_pred HHhhccCHH
Q 010079 321 AMSVKKDVQ 329 (518)
Q Consensus 321 ela~~~~v~ 329 (518)
.|..+|+..
T Consensus 512 ~lE~sG~g~ 520 (652)
T COG2433 512 KLELSGKGT 520 (652)
T ss_pred hhhhcCCCc
Confidence 666677643
No 188
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.71 E-value=46 Score=28.07 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHH
Q 010079 95 IDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVM 144 (518)
Q Consensus 95 I~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~ 144 (518)
|.-++-+|.+|+.....+....+..+..|..|..+-..|.++..++..-+
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455577788888887887777778888888888888888877776443
No 189
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=63.23 E-value=37 Score=30.03 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 198 SEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEAL 277 (518)
Q Consensus 198 ~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~L 277 (518)
.|=+.++.+++.|...++-+..+-+ .|..++ ...-+..|.+.++.+...|+.+.++...+...+..+
T Consensus 34 ~E~~~v~~eL~~l~~d~~vyk~VG~-------vlv~~~------~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 34 KEAEKALEELERLPDDTPVYKSVGN-------LLVKTD------KEEAIQELKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHcCCCcchhHHHhch-------hhheec------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577777777766654432222 111111 011234455555566555666665555555555555
Q ss_pred HHHHHHH
Q 010079 278 QQEVNDV 284 (518)
Q Consensus 278 qeEldal 284 (518)
+..+..+
T Consensus 101 q~~l~~~ 107 (110)
T TIGR02338 101 QEKIQEA 107 (110)
T ss_pred HHHHHHH
Confidence 5555443
No 190
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=62.81 E-value=2.4 Score=50.13 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 268 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 268 kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
+.+..+|+.|...+++.+....++...+..+..+...+...+-..++....
T Consensus 549 kKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~ 599 (859)
T PF01576_consen 549 KKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREE 599 (859)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 445556777777777777777777777766666666665555554444433
No 191
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.45 E-value=2.6e+02 Score=31.28 Aligned_cols=96 Identities=19% Similarity=0.239 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVK 325 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~ 325 (518)
.+.++.+.+.+.+.-+.++.++..++.+++.++.++.++.+.=..+.++....+.+..++...+-..+.. ..
T Consensus 363 ~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s--------~d 434 (493)
T KOG0804|consen 363 ADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGS--------KD 434 (493)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 4555555666666666666667777777777777777777665556666666666555554422221111 11
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhCChhhH
Q 010079 326 KDVQGLKELSNSEVEKYMTLWNNNKAFR 353 (518)
Q Consensus 326 ~~v~el~~~~~~eve~fm~~wn~~~~FR 353 (518)
..+.+|++ ||--.|-+.-+...|-
T Consensus 435 ~~I~dLqE----QlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 435 EKITDLQE----QLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHHHH----HHHhHheehhhhhhhh
Confidence 24555554 5666777666655543
No 192
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=61.20 E-value=1.7e+02 Score=28.79 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010079 273 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 310 (518)
Q Consensus 273 ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~ 310 (518)
+...|+.++..+..+.+.....+..|..+..-.++.|-
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~ 156 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFR 156 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 57788888888888888888888888888877776553
No 193
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=61.04 E-value=78 Score=26.71 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010079 248 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 306 (518)
Q Consensus 248 ~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n 306 (518)
++.+-++.+..++..+..+...+-.+.+.+.+..+.-.+..+..+.....+-.-...+|
T Consensus 30 ~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 30 EVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444444444444455555555555555555555555555444433
No 194
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=60.94 E-value=1.2e+02 Score=26.85 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=32.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Q 010079 299 RKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVE 340 (518)
Q Consensus 299 Rkerde~n~~f~~~r~~l~karela~~~~v~el~~~~~~eve 340 (518)
+...++....|-.|+....++-+++..|+..+...++..++.
T Consensus 108 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 149 (181)
T PF12729_consen 108 KQLLEEFKEAWKAYRKLRDQVIELAKSGDNDEARAILNGEAR 149 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhHH
Confidence 444556666777777788888889999998888888887764
No 195
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.56 E-value=3.4e+02 Score=32.01 Aligned_cols=38 Identities=16% Similarity=0.395 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhcCCCC-h-HHHHHHHHHHHHHHHHHH
Q 010079 177 EELDDLIRSLQYRIQHEIIP-L-SEEKQILREIKQLEGTRE 215 (518)
Q Consensus 177 EEID~~I~~LE~rIqhgSLs-L-~EEKklLkEIkqLek~Rk 215 (518)
+.|..|+..|=..++.. .| | ..|+.+.+|...++....
T Consensus 610 e~L~~R~~~vl~~l~~~-~P~LS~AEr~~~~EL~~~~~~l~ 649 (717)
T PF10168_consen 610 EKLMKRVDRVLQLLNSQ-LPVLSEAEREFKKELERMKDQLQ 649 (717)
T ss_pred HHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 45666666665555432 33 3 336888888777766544
No 196
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.43 E-value=2.5e+02 Score=30.35 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010079 263 LEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 316 (518)
Q Consensus 263 l~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l 316 (518)
+..++.-+-.+|..++.++.++..+.+.+...+.++..++.+++..+.+-+..+
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555555555554444443
No 197
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.33 E-value=2.2e+02 Score=29.68 Aligned_cols=66 Identities=11% Similarity=0.170 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHh
Q 010079 94 KIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (518)
Q Consensus 94 kI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~ 159 (518)
+|.+++++...+...-..|.+.+.....+++++..+++.+.++...++..+....+.|...++.|+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444555555555555555555555555555555555665566554
No 198
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=59.87 E-value=96 Score=31.33 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 010079 264 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 324 (518)
Q Consensus 264 ~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~ 324 (518)
..+...+.++...|.+++..-..+-+.+-++-.+|++|.+.++.+|...-.+..+.++-..
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555555555555555666777777777777666666555555433
No 199
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=59.73 E-value=91 Score=27.14 Aligned_cols=45 Identities=13% Similarity=0.364 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 252 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 296 (518)
Q Consensus 252 eid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~ 296 (518)
+++.|.+++..|..+...+..+++.++...++++.+=.++..+|+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444555555555555656666666666666666666666666554
No 200
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=59.61 E-value=1.7e+02 Score=30.76 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=34.8
Q ss_pred HHhhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 010079 148 RKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVM 218 (518)
Q Consensus 148 ~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~ 218 (518)
--||..|+..|.+|+ ++=|+.+..+.|-++. | |.+=+||+||+.--+.+.
T Consensus 88 etEI~eLksQL~RMr-------------EDWIEEECHRVEAQLA-----L---KEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 88 ETEIDELKSQLARMR-------------EDWIEEECHRVEAQLA-----L---KEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHH
Confidence 446677778888887 4567888888888654 4 345568888887766544
No 201
>PRK10869 recombination and repair protein; Provisional
Probab=59.59 E-value=3.1e+02 Score=31.15 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHHH
Q 010079 327 DVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLD 365 (518)
Q Consensus 327 ~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~ 365 (518)
+..+|+..+..--+.++.+=..-...|..+-+....+..
T Consensus 342 ~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~ 380 (553)
T PRK10869 342 DLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLIT 380 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666777777666555543
No 202
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=59.54 E-value=1.7e+02 Score=28.12 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=36.8
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 242 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 242 ~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
++.++..+|+.||.+.-.|+.|-.....-..+|..-.+.+++.+.+...+...|.+|=.
T Consensus 82 ~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~ 140 (159)
T PF04949_consen 82 MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVS 140 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777766666666655555556666666666666666666666555543
No 203
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=58.22 E-value=3.1e+02 Score=30.75 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEI 274 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei 274 (518)
++.++.+.+-++..|..++.++..+..++
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~ 304 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAEL 304 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544444444444333
No 204
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=58.06 E-value=3.3 Score=47.84 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhh
Q 010079 130 LRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (518)
Q Consensus 130 LkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~kl 161 (518)
+..|..+...+......-..++..|++.+..+
T Consensus 393 ~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL 424 (713)
T PF05622_consen 393 NKQLEEKLEALEEEKERLQEERDSLRETNEEL 424 (713)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33343443333333333444444455444333
No 205
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=58.05 E-value=1.4e+02 Score=28.73 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=17.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQE 280 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeE 280 (518)
..+++++|.+..++.+|..|++.++-+...|..+..+
T Consensus 65 ~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d 101 (157)
T COG3352 65 IEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRD 101 (157)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555444444444433333
No 206
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=57.93 E-value=3.8e+02 Score=31.66 Aligned_cols=187 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhccc
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNAR 168 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr 168 (518)
..+...|....+....+-..=..|..+..-...+-..|..++..-...+-.+-.....-....+.|.+....+.++..
T Consensus 436 ~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~-- 513 (698)
T KOG0978|consen 436 EELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQIL-- 513 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhH
Q 010079 169 SGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDG 248 (518)
Q Consensus 169 ~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~ 248 (518)
..-.+++-+...|..||.+.-.-+ ..+-.+++|+..+....+. .+..+-+
T Consensus 514 --~l~~~~~~~~~~i~~leeq~~~lt---~~~~~l~~el~~~~~~le~-------------------------~kk~~~e 563 (698)
T KOG0978|consen 514 --TLKASVDKLELKIGKLEEQERGLT---SNESKLIKELTTLTQSLEM-------------------------LKKKAQE 563 (698)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhh---HhhhhhHHHHHHHHHHHHH-------------------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 249 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 249 lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
+.+..+.++..+.....++..++..+..+..+++....++..+-+.+..|+.....+.+
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 207
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=57.72 E-value=49 Score=36.20 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 276 ALQQEVNDVAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 276 ~LqeEldal~~~rdeay~~i~~LRkerd 303 (518)
.|.++...++++...+-+.+..|..+++
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 208
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=57.71 E-value=1.7e+02 Score=27.51 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHh-hhhhhhcccC-
Q 010079 92 RAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG-KLRTTNNARS- 169 (518)
Q Consensus 92 KakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~-klre~~nAr~- 169 (518)
.-.|..+=..|+++.+++-+..+.+...+.-...|..+|++|..+.-.+...++.|..-+.-|+---. +-.+.+..-.
T Consensus 5 eP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~ 84 (134)
T PF15233_consen 5 EPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTL 84 (134)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34577777888889999999999999999999999999999999988888887777765554442111 1111111000
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hcCCCC-hHHHHHHHHHHHHHHHHHHHH
Q 010079 170 GGICSSEEELDDLIRSLQYRI-QHEIIP-LSEEKQILREIKQLEGTREKV 217 (518)
Q Consensus 170 ~~~~~S~EEID~~I~~LE~rI-qhgSLs-L~EEKklLkEIkqLek~Rk~v 217 (518)
..-|+.-=++.. +||..+ +|-.+- .--.-++-+||..|..+.+++
T Consensus 85 ~~eck~R~~fe~---qLE~lm~qHKdLwefh~~erLa~EI~~l~~sKEQL 131 (134)
T PF15233_consen 85 LQECKLRLDFEE---QLEDLMGQHKDLWEFHMPERLAREICALESSKEQL 131 (134)
T ss_pred hHhHHHHHHHHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHH
Confidence 011331222232 333333 254432 222667888888888887764
No 209
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=57.55 E-value=3e+02 Score=30.40 Aligned_cols=76 Identities=14% Similarity=0.221 Sum_probs=38.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 319 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~ka 319 (518)
.+|.......+..-..|.....++....-.|..-.+.+.+=-.+-+.+-....-|-.+..++..+|..|++....+
T Consensus 217 ~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q~ 292 (499)
T COG4372 217 EELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQA 292 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444544444444444444444444433333444444555556666667777776676655443
No 210
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=56.59 E-value=2.2e+02 Score=28.58 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHH
Q 010079 175 SEEELDDLIRSLQYRIQHEIIPLSE 199 (518)
Q Consensus 175 S~EEID~~I~~LE~rIqhgSLsL~E 199 (518)
..++=-.+|..|...+..+.+|+.|
T Consensus 125 ~~~eR~~Rl~~L~~~l~~~dv~~~e 149 (251)
T PF11932_consen 125 LLEERQERLARLRAMLDDADVSLAE 149 (251)
T ss_pred ChHHHHHHHHHHHHhhhccCCCHHH
Confidence 3334444556666666666666553
No 211
>smart00030 CLb CLUSTERIN Beta chain.
Probab=56.54 E-value=2.2e+02 Score=28.55 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=27.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHHHhhhhccCCC
Q 010079 326 KDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGR 374 (518)
Q Consensus 326 ~~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR 374 (518)
....+-+.+|| +.+|++|- =-|--|.+||+|+-||--|
T Consensus 71 ~kL~E~~~vCn---etm~alWe--------ECKpCLk~tCmkfYsr~Cr 108 (206)
T smart00030 71 EKLKESQGVCN---ETMMALWE--------ECKPCLKQTCMKFYARVCR 108 (206)
T ss_pred HHHHHHHHHHH---HHHHHHHH--------HhHHHHHHHHHHHHHHhcC
Confidence 34566778886 78999993 2345588999999986544
No 212
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=56.53 E-value=2.1e+02 Score=28.34 Aligned_cols=24 Identities=8% Similarity=-0.105 Sum_probs=15.7
Q ss_pred hhHHHHHHHhHHHHHhhhhccCCC
Q 010079 351 AFRDDYEKRLLQSLDMRQLSRDGR 374 (518)
Q Consensus 351 ~FR~dY~k~~~~s~~~R~~~~DGR 374 (518)
.+...|+..-++.++.++...++.
T Consensus 193 ~~~~~~y~~~~p~~~~~~q~le~~ 216 (251)
T cd07653 193 KEQRQHYSTDLPQIFDKLQELDEK 216 (251)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhHH
Confidence 455666666777777777666643
No 213
>PLN02678 seryl-tRNA synthetase
Probab=56.31 E-value=92 Score=34.59 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010079 201 KQILREIKQLEGTREKVM 218 (518)
Q Consensus 201 KklLkEIkqLek~Rk~v~ 218 (518)
++++.++.+|+..|+.++
T Consensus 43 r~l~~~~e~lr~erN~~s 60 (448)
T PLN02678 43 RQRQFELDSLRKEFNKLN 60 (448)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777777777655
No 214
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.16 E-value=2.7e+02 Score=31.98 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCCC
Q 010079 175 SEEELDDLIRSLQYRIQHEIIP 196 (518)
Q Consensus 175 S~EEID~~I~~LE~rIqhgSLs 196 (518)
+.++=|..|..|...+|.--|+
T Consensus 265 tl~ardesIkkLlEmLq~kgmg 286 (654)
T KOG4809|consen 265 TLDARDESIKKLLEMLQRKGMG 286 (654)
T ss_pred hhhhHHHHHHHHHHHHHHhhcc
Confidence 4445555666666666655554
No 215
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.13 E-value=60 Score=31.27 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010079 273 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 309 (518)
Q Consensus 273 ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f 309 (518)
+.+.+.+|+..++.+..++-.++..|++|-+.+..+|
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444455555555556666665555544
No 216
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=55.79 E-value=1.2e+02 Score=29.68 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=44.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHhhHhhhHHHH
Q 010079 79 YFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKR------GVRGDLAAQLRSLKTEGRQYKSVMD 145 (518)
Q Consensus 79 yfvR~p~pDD~~lKakI~~a~keI~klnq~R~~I~~alk~~R------~~R~eL~~qLkaLr~q~~~~r~~~~ 145 (518)
||=-+|.-.--..+.+++.++++|..+......+...+...+ .+|..+..++..|..+...++..+.
T Consensus 55 ~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 55 YYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred EEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456666678888999999999888888877777775443 4555666666666665555544433
No 217
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=55.74 E-value=1.7e+02 Score=26.99 Aligned_cols=54 Identities=9% Similarity=0.280 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 249 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 249 lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
+..+++.+...+..|.+++..+..++..++.....+......+-..+..++++.
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~ 117 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEEL 117 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444444444333
No 218
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=55.48 E-value=1.1e+02 Score=24.88 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVND 283 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeElda 283 (518)
|..++..--....++++.......+..+|..|..++.+
T Consensus 20 L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444433
No 219
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=54.77 E-value=5.3e+02 Score=32.41 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=6.4
Q ss_pred HHHHHHHHHhCChhhH
Q 010079 338 EVEKYMTLWNNNKAFR 353 (518)
Q Consensus 338 eve~fm~~wn~~~~FR 353 (518)
++-.+..-.+..++=|
T Consensus 701 ~~~e~~~~lseek~ar 716 (1317)
T KOG0612|consen 701 QMKEIESKLSEEKSAR 716 (1317)
T ss_pred HHHHHHHHhcccccHH
Confidence 3333333334444444
No 220
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=54.70 E-value=3.8e+02 Score=30.70 Aligned_cols=7 Identities=29% Similarity=0.633 Sum_probs=3.5
Q ss_pred cceEEec
Q 010079 76 HNFYFIR 82 (518)
Q Consensus 76 ~~fyfvR 82 (518)
++|.|.|
T Consensus 95 dkfrF~k 101 (570)
T COG4477 95 DKFRFNK 101 (570)
T ss_pred hhhhhHH
Confidence 4455553
No 221
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=54.66 E-value=1.5e+02 Score=34.47 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=11.4
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 010079 243 GSDLDGVKKESQAVWAKISHL 263 (518)
Q Consensus 243 ~~eId~lKKeid~lr~kIKel 263 (518)
...|+.|+++...|++.+..+
T Consensus 565 ~~~l~~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555444
No 222
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=54.03 E-value=2.5e+02 Score=30.44 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEG--KVKALDEEIEALQQEVNDV-----AEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~--k~kal~~ei~~LqeEldal-----~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
|.++++.+..+...+..+.. .+..+..++..|..++..- .++-.++..++..|....+.. ..|.+...++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~-~~~~~~~~d~~~ 80 (364)
T TIGR00020 2 INEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTL-EELKNSLEDLSE 80 (364)
T ss_pred chHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34444444455444444432 2444445555555444321 122333444444444444332 235555666666
Q ss_pred HHHHhhccCHHHHHHHHHHHHHHHH
Q 010079 319 AKAMSVKKDVQGLKELSNSEVEKYM 343 (518)
Q Consensus 319 arela~~~~v~el~~~~~~eve~fm 343 (518)
+.+++...+-.++.+++..|+...-
T Consensus 81 l~el~~~e~D~e~~~~a~~e~~~l~ 105 (364)
T TIGR00020 81 LLELAVEEDDEETFNELDAELKALE 105 (364)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 6666543333556666666665543
No 223
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=53.76 E-value=1.9e+02 Score=26.87 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 297 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~ 297 (518)
.|+.+-.++|+...-.+.+.+++..++.++..+..+++.+..--..+-.+|..
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555445555555555555555555555444444444444433
No 224
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=53.54 E-value=1.1e+02 Score=30.73 Aligned_cols=84 Identities=26% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------HHHhhccCHHHH
Q 010079 261 SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA---------KAMSVKKDVQGL 331 (518)
Q Consensus 261 Kel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~ka---------rela~~~~v~el 331 (518)
+.+..-+..++..|...-..++.+.. |..|..|++...+....|-..|..++.| +.-..+.+|.+|
T Consensus 5 ~~~~~~~d~lq~~i~~as~~lNd~TG-----Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 5 KKLSFYMDSLQETIFTASQALNDVTG-----YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH----HHHHHHHHHHHHhCC
Q 010079 332 KEL----SNSEVEKYMTLWNNN 349 (518)
Q Consensus 332 ~~~----~~~eve~fm~~wn~~ 349 (518)
=.- .-..+++|.+|.-+|
T Consensus 80 LqRK~sWs~~DleRFT~Lyr~d 101 (207)
T PF05546_consen 80 LQRKHSWSPADLERFTELYRND 101 (207)
T ss_pred HhcccCCChHHHHHHHHHHHhh
No 225
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=53.40 E-value=97 Score=32.53 Aligned_cols=73 Identities=15% Similarity=0.270 Sum_probs=40.0
Q ss_pred eccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhh--------------HHHHH
Q 010079 81 IRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYK--------------SVMDD 146 (518)
Q Consensus 81 vR~p~pDD~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r--------------~~~~~ 146 (518)
||||.| +.|-.=+++-+--|. ..|.++.+..+.+..+= .+|..|+.|+...+ =++++
T Consensus 51 ikPP~P--EQYLTPLQQKEV~iR---HLkakLkes~~~l~dRe----tEI~eLksQL~RMrEDWIEEECHRVEAQLALKE 121 (305)
T PF15290_consen 51 IKPPNP--EQYLTPLQQKEVCIR---HLKAKLKESENRLHDRE----TEIDELKSQLARMREDWIEEECHRVEAQLALKE 121 (305)
T ss_pred CCCCCH--HHhcChHHHHHHHHH---HHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544 455555555555454 33445555544443321 22333444433332 26778
Q ss_pred HHHhhHHHHHHHhhhh
Q 010079 147 KRKEMEPLHQALGKLR 162 (518)
Q Consensus 147 K~~Eik~Lqe~L~klr 162 (518)
-++||++|++++.-+|
T Consensus 122 ARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 122 ARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889999999988776
No 226
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=53.35 E-value=1.3e+02 Score=29.18 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=29.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF 292 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay 292 (518)
+...++.++..+..+++.|..++..+..++..++++...+....+.+.
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666666666666666554
No 227
>PF13166 AAA_13: AAA domain
Probab=53.33 E-value=4e+02 Score=30.54 Aligned_cols=18 Identities=6% Similarity=0.110 Sum_probs=7.3
Q ss_pred cCCCCC-hHHHHHHHHHHH
Q 010079 83 HRQYDD-PKIRAKIDLTDR 100 (518)
Q Consensus 83 ~p~pDD-~~lKakI~~a~k 100 (518)
+|=|-- +--..-++.+..
T Consensus 258 CpfC~q~~l~~~~~~~l~~ 276 (712)
T PF13166_consen 258 CPFCQQEPLSEERKERLEK 276 (712)
T ss_pred CCCCCCcCCcHHHHHHHHH
Confidence 344444 244444444433
No 228
>PRK15396 murein lipoprotein; Provisional
Probab=53.03 E-value=87 Score=26.75 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 253 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 297 (518)
Q Consensus 253 id~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~ 297 (518)
++.|.+++..|..++..+..+++.+.....+++++=..+..+|+.
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555555544
No 229
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.45 E-value=5.2e+02 Score=31.64 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=25.3
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Q 010079 324 VKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEK 358 (518)
Q Consensus 324 ~~~~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k 358 (518)
.+|.+.+|+.-.++..|+..-+-.+=.-||+---.
T Consensus 502 ~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~ 536 (1243)
T KOG0971|consen 502 AKGARKELQKRVEAAQETVYDRDQTIKKFRELVAH 536 (1243)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34677777777777777777777777788876544
No 230
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=52.38 E-value=1.2e+02 Score=24.32 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhC
Q 010079 288 RDKAFANIKELRKQRDEGN-AYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNN 348 (518)
Q Consensus 288 rdeay~~i~~LRkerde~n-~~f~~~r~~l~karela~~~~v~el~~~~~~eve~fm~~wn~ 348 (518)
.+.+|..+.++...++... ..+-.....+.+++.|+...+.. -+..++..++..|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~----~~~~~~k~l~~~Wk~ 68 (77)
T PF03993_consen 11 CDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESEDWK----EAAEEIKELQQEWKE 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH----HHHHHHHHHHHHHHH
Confidence 4455556666666655444 46666677777888888887733 344556777777764
No 231
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=52.06 E-value=2e+02 Score=26.59 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 010079 201 KQILREIKQLEGTREK 216 (518)
Q Consensus 201 KklLkEIkqLek~Rk~ 216 (518)
..+|.=|-.|=..|..
T Consensus 34 ~~vin~i~~Ll~~~~r 49 (151)
T PF11559_consen 34 VRVINCIYDLLQQRDR 49 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 232
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=51.74 E-value=1.1e+02 Score=35.14 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=49.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
+|-++..+++.|.+.|.++..++.+++..|..-|.+|.+++..+..+--.+.+|+.+-
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 5667777788888888888888999999999999999999999988888888888754
No 233
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=51.73 E-value=2.6e+02 Score=30.40 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=43.2
Q ss_pred HhhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHHHHH
Q 010079 149 KEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTREKVM 218 (518)
Q Consensus 149 ~Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSL--sL~EEKklLkEIkqLek~Rk~v~ 218 (518)
+.++.|...+..+. .+...+.+..++..|+..+...++ ....=..++++++.|+.....+.
T Consensus 7 ~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~ 69 (364)
T TIGR00020 7 NRIEDLTSRLDTVR---------GSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLE 69 (364)
T ss_pred HHHHHHHHHHHHHH---------hhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554 477899999999999999988776 35555577788888877766543
No 234
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=51.64 E-value=2.6e+02 Score=27.87 Aligned_cols=61 Identities=26% Similarity=0.355 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 258 AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 258 ~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
++-+.++.+...+-.++..|+++...+...++.+-.....|..+...+....|.+-..+..
T Consensus 88 aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~ 148 (193)
T PF14662_consen 88 AQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQ 148 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555555555555555555555444444444
No 235
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=51.40 E-value=4.7e+02 Score=30.74 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 010079 199 EEKQILREIKQLEGTR 214 (518)
Q Consensus 199 EEKklLkEIkqLek~R 214 (518)
+-.++..++..|....
T Consensus 176 ~~~~~~~~~~~~~~~l 191 (670)
T KOG0239|consen 176 ESLKLESDLGDLVTEL 191 (670)
T ss_pred HHHHHhhhHHHHHHHH
Confidence 3333444444443333
No 236
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=51.32 E-value=4.3e+02 Score=30.28 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=13.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 010079 297 ELRKQRDEGNAYFFQYRALLNEAK 320 (518)
Q Consensus 297 ~LRkerde~n~~f~~~r~~l~kar 320 (518)
.|+.-.+....+|.+...-+...+
T Consensus 289 ~i~~~~~~~~~~y~~~~p~i~~~~ 312 (555)
T TIGR03545 289 EIRKYLQKFLKYYDQAEPLLNKSK 312 (555)
T ss_pred HHHHHHHHHHHHHHHHhHhhccch
Confidence 345555555556666555555543
No 237
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=51.12 E-value=1.7e+02 Score=25.52 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHH
Q 010079 329 QGLKELSNSEVEKYMTLWNNNKAFRDDY 356 (518)
Q Consensus 329 ~el~~~~~~eve~fm~~wn~~~~FR~dY 356 (518)
.+...|.+.||..||....+..++|.-|
T Consensus 58 ~e~~~lT~~E~~~ll~~~~~~~~~~~~~ 85 (86)
T PF12958_consen 58 PEPKDLTNDEFYELLEFLFHLPEVQEAL 85 (86)
T ss_pred hcchhcCHHHHHHHHHHHHcCHHHHHhh
Confidence 3456778899999999999988888655
No 238
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=50.90 E-value=2e+02 Score=27.26 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=6.2
Q ss_pred hccCCCCCCCCCC
Q 010079 369 LSRDGRIRNPDEK 381 (518)
Q Consensus 369 ~~~DGR~~~pde~ 381 (518)
++-|| ..|-||+
T Consensus 113 l~~dg-~~Gldeq 124 (155)
T PF06810_consen 113 LDDDG-LKGLDEQ 124 (155)
T ss_pred eCCCc-cccHHHH
Confidence 34455 5555554
No 239
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=50.88 E-value=1.2e+02 Score=26.92 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=39.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 243 GSDLDGVKKESQAVWAKISHLEGKVKAL--DEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 243 ~~eId~lKKeid~lr~kIKel~~k~kal--~~ei~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
+.+++.+...++.....+..++.++..+ .+++..|+-++..++...+..-..++.+..+.+-
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666 6666666666666666666666666666555443
No 240
>PHA03011 hypothetical protein; Provisional
Probab=50.75 E-value=1.2e+02 Score=27.31 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=39.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010079 243 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY 308 (518)
Q Consensus 243 ~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~ 308 (518)
.+.++++...+|.+++ ++..+.++++-+.-+.+.+-.-+++--.++--||.+.|.+...
T Consensus 56 ~GD~Nai~e~ldeL~~-------qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 56 EGDINAIIEILDELIA-------QYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKEN 114 (120)
T ss_pred cccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 3567767777776666 4445555556666666666677777777788888888876543
No 241
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.26 E-value=4.5e+02 Score=30.27 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=11.6
Q ss_pred hhHHHHHHHHhhHHHHHHHhhh
Q 010079 140 YKSVMDDKRKEMEPLHQALGKL 161 (518)
Q Consensus 140 ~r~~~~~K~~Eik~Lqe~L~kl 161 (518)
++..+..|..|++.|+.....|
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666665554433
No 242
>PHA03395 p10 fibrous body protein; Provisional
Probab=50.09 E-value=99 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010079 256 VWAKISHLEGKVKALDEEIEALQ 278 (518)
Q Consensus 256 lr~kIKel~~k~kal~~ei~~Lq 278 (518)
+|+-|+++.+++.+++..++.++
T Consensus 9 Ir~dIkavd~KVdalQ~~V~~l~ 31 (87)
T PHA03395 9 IRQDIKAVSDKVDALQAAVDDVR 31 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 44444555555544444444443
No 243
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=50.07 E-value=3.6e+02 Score=29.00 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=8.0
Q ss_pred eccCCCCChHHHHHHHH
Q 010079 81 IRHRQYDDPKIRAKIDL 97 (518)
Q Consensus 81 vR~p~pDD~~lKakI~~ 97 (518)
|.+.. .||..-+.|..
T Consensus 136 is~~~-~dp~~A~~i~n 151 (444)
T TIGR03017 136 IEFSG-VDPRFAATVAN 151 (444)
T ss_pred EEEeC-CCHHHHHHHHH
Confidence 44444 34555555554
No 244
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.02 E-value=62 Score=30.63 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 010079 263 LEGKVKALDEEIEAL 277 (518)
Q Consensus 263 l~~k~kal~~ei~~L 277 (518)
|+.++.+.+.+++.|
T Consensus 66 LRqqL~aKr~ELnAL 80 (143)
T PRK11546 66 LRQQLVSKRYEYNAL 80 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 245
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=49.63 E-value=82 Score=32.23 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 299 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LR 299 (518)
|..|..++|=.|.+..+|++++......+..|+.|++.+.+.=-++|+++.=|.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677899999999999999999999999999999999999888888887776554
No 246
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=49.50 E-value=1.6e+02 Score=33.02 Aligned_cols=8 Identities=0% Similarity=0.239 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 010079 282 NDVAEKRD 289 (518)
Q Consensus 282 dal~~~rd 289 (518)
..+..+++
T Consensus 97 ~~id~~i~ 104 (472)
T TIGR03752 97 QSIDQQIQ 104 (472)
T ss_pred hhHHHHHH
Confidence 33333333
No 247
>PLN02320 seryl-tRNA synthetase
Probab=49.40 E-value=77 Score=35.73 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 010079 249 VKKESQA 255 (518)
Q Consensus 249 lKKeid~ 255 (518)
++.+++.
T Consensus 112 lr~ern~ 118 (502)
T PLN02320 112 LRAERNA 118 (502)
T ss_pred HHHHHHH
Confidence 3333333
No 248
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.27 E-value=4.4e+02 Score=29.80 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhh
Q 010079 120 RGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (518)
Q Consensus 120 R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~kl 161 (518)
+.+-+.+...+..++.+...+.........+++-|+..+..|
T Consensus 160 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 160 VKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433
No 249
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=48.94 E-value=3.4e+02 Score=29.47 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010079 248 GVKKESQAVWAKISHLEGK--VKALDEEIEALQQEVNDV-----AEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAK 320 (518)
Q Consensus 248 ~lKKeid~lr~kIKel~~k--~kal~~ei~~LqeEldal-----~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~kar 320 (518)
.+++.+..+...+..+... +..+..++..|...+..- ...-.++..++..|....+.. +.|......+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~-~~l~~~~~e~~~~~ 82 (367)
T PRK00578 4 EISERLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTL-EELRQRLDDLEELL 82 (367)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444444444444444332 444444455554444211 122333344444444444332 23555555666666
Q ss_pred HHhhccCHHHHHHHHHHHHHHHHHHH
Q 010079 321 AMSVKKDVQGLKELSNSEVEKYMTLW 346 (518)
Q Consensus 321 ela~~~~v~el~~~~~~eve~fm~~w 346 (518)
+++...+-.++.+++..++..+....
T Consensus 83 ell~~e~D~el~~~a~~e~~~l~~~l 108 (367)
T PRK00578 83 ELAEEEDDEETLAEAEAELKALEKKL 108 (367)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 66644333567777777776655544
No 250
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=48.57 E-value=1.1e+02 Score=33.44 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 276 ALQQEVNDVAEKRDKAFANIKELRKQ 301 (518)
Q Consensus 276 ~LqeEldal~~~rdeay~~i~~LRke 301 (518)
+|.++...+++++..+-..+..|..+
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~ 98 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAE 98 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 251
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=48.21 E-value=1.7e+02 Score=24.85 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010079 255 AVWAKISHLEGKVKALDEEIEALQQEVNDVA-----EKRDKAFANIKELRKQRDEGNAYFFQYR 313 (518)
Q Consensus 255 ~lr~kIKel~~k~kal~~ei~~LqeEldal~-----~~rdeay~~i~~LRkerde~n~~f~~~r 313 (518)
+|-.-|+++.+++.-++-++..|+++++.+. ..|..+-.+|..|=+..+.+...+|...
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455666666666666666655555543 4667777777777777777777666543
No 252
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.87 E-value=4.9e+02 Score=30.00 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 010079 178 ELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKV 217 (518)
Q Consensus 178 EID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v 217 (518)
-|...+..|.++|.--.+|..|=+++-.|=.+|.+....+
T Consensus 312 ~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i 351 (581)
T KOG0995|consen 312 KLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKI 351 (581)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777788777888777777777776666665554
No 253
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=47.12 E-value=3.3e+02 Score=27.73 Aligned_cols=163 Identities=16% Similarity=0.214 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhc---cchhHHHHHHH
Q 010079 178 ELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMG---SDLDGVKKESQ 254 (518)
Q Consensus 178 EID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~---~eId~lKKeid 254 (518)
+-...|..||.++ |++.+-+..|-+.|..++...+..|..-..++.-+.... +. ..|.++...+.
T Consensus 26 ~k~~~ie~LE~qL----------k~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~--Ls~als~laev~~~i~ 93 (234)
T cd07665 26 EKLQEVECEEQRL----------RKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTA--LSRALSQLAEVEEKIE 93 (234)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHH
Confidence 4455577777766 678888999999999998888877654455554332110 11 12232223333
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHH
Q 010079 255 AVWAKISHLE-GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA------------YFFQYRALLNEAKA 321 (518)
Q Consensus 255 ~lr~kIKel~-~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~------------~f~~~r~~l~kare 321 (518)
.+......-. -.+...=++|-.+-.-+..+-..|..+|..+..+...+..+.. .+.+...++..+..
T Consensus 94 ~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~ 173 (234)
T cd07665 94 QLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWES 173 (234)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 3222211110 1244444577777778888888888888887776554443322 33333344443322
Q ss_pred Hh--hccCHHHHHHHHHHHHHHHHHHHhCChhhHH
Q 010079 322 MS--VKKDVQGLKELSNSEVEKYMTLWNNNKAFRD 354 (518)
Q Consensus 322 la--~~~~v~el~~~~~~eve~fm~~wn~~~~FR~ 354 (518)
-+ ++.+...+-..+..||++|-.- .-..||.
T Consensus 174 k~~~a~~~fe~is~~ik~El~rFe~e--r~~Dfk~ 206 (234)
T cd07665 174 RVTQYERDFERISATVRKEVIRFEKE--KSKDFKN 206 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 22 3457888999999999999764 3345665
No 254
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=47.02 E-value=2.2e+02 Score=25.80 Aligned_cols=44 Identities=11% Similarity=0.293 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 247 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 290 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rde 290 (518)
+.|.++.|.|++.+..|..+.......++.|+.+++.+....+.
T Consensus 33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 33 GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666655556555555555555555555555555554
No 255
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=46.83 E-value=5.4e+02 Score=30.20 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=13.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhHhh
Q 010079 116 LRAKRGVRGDLAAQLRSLKTEGRQY 140 (518)
Q Consensus 116 lk~~R~~R~eL~~qLkaLr~q~~~~ 140 (518)
+.....++...+..+-.+..+....
T Consensus 130 ~~~~~~~~~s~~~~~~~~~~~~~~~ 154 (670)
T KOG0239|consen 130 LSQAEEDNPSIFVSLLELAQENRGL 154 (670)
T ss_pred hhhhhcccccHHHHHHHHHhhhccc
Confidence 3444555566666666666655543
No 256
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=46.28 E-value=3.2e+02 Score=27.40 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 270 LDEEIEALQQEVNDVAEKRDKAFAN 294 (518)
Q Consensus 270 l~~ei~~LqeEldal~~~rdeay~~ 294 (518)
+-++|..|...+..-.+.|-.....
T Consensus 202 v~~Ei~~lk~~l~~e~~~R~~~Dd~ 226 (247)
T PF06705_consen 202 VLEEIAALKNALALESQEREQSDDD 226 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3344444444444444444444433
No 257
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.23 E-value=62 Score=37.20 Aligned_cols=75 Identities=24% Similarity=0.360 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 010079 124 GDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQI 203 (518)
Q Consensus 124 ~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKkl 203 (518)
..+...+..|..+++.+...+.+...+|..|.+.|..++.. .....-++..|..++++|..=...|.+++.-
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~--------~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE--------VRDKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666677777777777777777777655521 1133346667777777777766677777765
Q ss_pred HHH
Q 010079 204 LRE 206 (518)
Q Consensus 204 LkE 206 (518)
+.+
T Consensus 497 ve~ 499 (652)
T COG2433 497 VEE 499 (652)
T ss_pred HHH
Confidence 544
No 258
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=46.10 E-value=3.8e+02 Score=28.13 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRN 106 (518)
Q Consensus 89 ~~lKakI~~a~keI~kln 106 (518)
..+...+..++.++..+.
T Consensus 84 ~~l~~~~~~l~a~~~~l~ 101 (423)
T TIGR01843 84 AELESQVLRLEAEVARLR 101 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777777777666544
No 259
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.05 E-value=1.8e+02 Score=24.57 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 258 AKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 258 ~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
++|+...+.+.-++-+|..|.++.+.+..+-+.+-..+.+|..
T Consensus 11 ~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 3333333344334444444444444444444444444444443
No 260
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=45.82 E-value=7e+02 Score=31.16 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHHHHhcC
Q 010079 174 SSEEELDDLIRSLQYRIQHE 193 (518)
Q Consensus 174 ~S~EEID~~I~~LE~rIqhg 193 (518)
.+..+...++..++.+++.+
T Consensus 144 q~~~~~~~~l~~i~~~L~~~ 163 (1109)
T PRK10929 144 QQQTEARRQLNEIERRLQTL 163 (1109)
T ss_pred hhHHHHHHHHHHHHHHHhCC
Confidence 44577888888888887774
No 261
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=45.79 E-value=2.4e+02 Score=25.85 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=10.1
Q ss_pred HHHHHHHHhCChhhHHHHHHHh
Q 010079 339 VEKYMTLWNNNKAFRDDYEKRL 360 (518)
Q Consensus 339 ve~fm~~wn~~~~FR~dY~k~~ 360 (518)
|+-|.... .+-|.-|+.|-
T Consensus 126 ~~~Fl~~f---~~~R~~yH~R~ 144 (150)
T PF07200_consen 126 VDDFLKQF---KEKRKLYHLRR 144 (150)
T ss_dssp HHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHH
Confidence 44444433 44567776653
No 262
>PRK14160 heat shock protein GrpE; Provisional
Probab=45.62 E-value=2.6e+02 Score=28.08 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010079 274 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAM 322 (518)
Q Consensus 274 i~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karel 322 (518)
+..|+.++..+..+...+-+.+..|+.++-.+.++|-+||+...+-++.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 104 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEG 104 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555566666666777788887776654443
No 263
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=45.03 E-value=3.5e+02 Score=31.14 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010079 202 QILREIKQLEGTREKVMA 219 (518)
Q Consensus 202 klLkEIkqLek~Rk~v~a 219 (518)
-|=+||+.|.+.|.++..
T Consensus 46 DLKkEIKKLQRlRdQIKt 63 (575)
T KOG2150|consen 46 DLKKEIKKLQRLRDQIKT 63 (575)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455789999999998653
No 264
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=45.01 E-value=3.8e+02 Score=27.86 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=62.1
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHH
Q 010079 242 MGSDLDGVKKESQAVWAKISHLEGKVKALDE-----------EIEALQQEVNDVAEKRDKAFANIKELRKQRDE-GNAYF 309 (518)
Q Consensus 242 ~~~eId~lKKeid~lr~kIKel~~k~kal~~-----------ei~~LqeEldal~~~rdeay~~i~~LRkerde-~n~~f 309 (518)
....+..|..+++.+.++|....+++..|.. .|..|.-+++.+++..+.=...+..++...-. +...+
T Consensus 79 ~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~ 158 (258)
T PF15397_consen 79 EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKI 158 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777887777777766555442 56677777777777666655555555443332 22222
Q ss_pred HHHH-HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Q 010079 310 FQYR-ALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRL 360 (518)
Q Consensus 310 ~~~r-~~l~karela~~~~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~ 360 (518)
-... ..+..+-.-+...--..|.... -+.-.++--|-..+.|.++....|
T Consensus 159 q~k~~~il~~~~~k~~~~~~~~l~~~~-~~N~~m~kei~~~re~i~el~e~I 209 (258)
T PF15397_consen 159 QEKKEEILSSAAEKTQSPMQPALLQRT-LENQVMQKEIVQFREEIDELEEEI 209 (258)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2233333333333333333322 233334444444566776666543
No 265
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=44.61 E-value=2.5e+02 Score=25.62 Aligned_cols=8 Identities=38% Similarity=0.659 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q 010079 129 QLRSLKTE 136 (518)
Q Consensus 129 qLkaLr~q 136 (518)
++..+...
T Consensus 11 e~~~~~~~ 18 (132)
T PF07926_consen 11 ELQRLKEQ 18 (132)
T ss_pred HHHHHHHH
Confidence 33333333
No 266
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=44.55 E-value=3.5e+02 Score=32.32 Aligned_cols=14 Identities=36% Similarity=0.235 Sum_probs=9.3
Q ss_pred HHHhHHHHHhhhhc
Q 010079 357 EKRLLQSLDMRQLS 370 (518)
Q Consensus 357 ~k~~~~s~~~R~~~ 370 (518)
.-|.|.+...|+|+
T Consensus 544 LtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 544 LTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHhh
Confidence 34667777777775
No 267
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=44.50 E-value=3e+02 Score=26.52 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010079 278 QQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLN 317 (518)
Q Consensus 278 qeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~ 317 (518)
..++..+...+|.+...|+.|..-...+-.+|-+.....+
T Consensus 83 RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 83 RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544444444443333
No 268
>PRK02119 hypothetical protein; Provisional
Probab=44.42 E-value=1.9e+02 Score=24.18 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 247 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 298 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~L 298 (518)
..+-..+..|..++.-.++.+..|++-+-.-+.+++.+..+...++..+..+
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555555555566666666655555555555555555544444443
No 269
>PF15456 Uds1: Up-regulated During Septation
Probab=44.34 E-value=2.6e+02 Score=25.77 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=46.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDV-----------AEKRDKAFANIKELRKQRDEGNAYFFQY 312 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal-----------~~~rdeay~~i~~LRkerde~n~~f~~~ 312 (518)
.+++++|+++..|.+.+..+..++. +...+.....-+..+ ..-....-..+..+-...|+...++|+.
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4678888888888888877777665 444443333333333 1234444555666666666777766666
Q ss_pred HHHHHHHHH
Q 010079 313 RALLNEAKA 321 (518)
Q Consensus 313 r~~l~kare 321 (518)
.+.+...+.
T Consensus 101 e~R~~~~~~ 109 (124)
T PF15456_consen 101 ENRLAEVRQ 109 (124)
T ss_pred HHHHHHHHH
Confidence 665555443
No 270
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=44.26 E-value=2.8e+02 Score=26.22 Aligned_cols=108 Identities=12% Similarity=0.277 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA---YFFQYRALLNEAKAM 322 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~---~f~~~r~~l~karel 322 (518)
|...+..++.+-.++..+.+.+..+...+..+..+-.++...-+.+..+-..|..-.+.+.. +|-..-...+...--
T Consensus 9 L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p 88 (157)
T PF04136_consen 9 LQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSP 88 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCC
Confidence 34444555566666666666666666666777777777777777777666666665555543 444444444333221
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHhCChhhHH
Q 010079 323 SVKKDVQGLKELSNSEVEKYMTLWNNNKAFRD 354 (518)
Q Consensus 323 a~~~~v~el~~~~~~eve~fm~~wn~~~~FR~ 354 (518)
...-+-.... -.-..++.-|.....+..|++
T Consensus 89 ~~sV~~~~F~-~~L~~LD~cl~Fl~~h~~fke 119 (157)
T PF04136_consen 89 GSSVNSDSFK-PMLSRLDECLEFLEEHPNFKE 119 (157)
T ss_pred CCcccchHHH-HHHHHHHHHHHHHHHhhhhhh
Confidence 1111111111 134556666777777777764
No 271
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.18 E-value=1.6e+02 Score=32.18 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 247 DGVKKESQAVWAKISHLEGKVKALDEEIEAL 277 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~~k~kal~~ei~~L 277 (518)
..++.+++.+..++..+.+.+..++..+..+
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l 360 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKL 360 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555554444444443
No 272
>PRK04406 hypothetical protein; Provisional
Probab=43.46 E-value=2e+02 Score=24.23 Aligned_cols=49 Identities=8% Similarity=0.243 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 249 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 297 (518)
Q Consensus 249 lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~ 297 (518)
+-..+..|..+|.-..+-+..|++.+-.-+.+++.+..+...++..+.+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555566666655555555555555555554444443
No 273
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=43.30 E-value=85 Score=34.39 Aligned_cols=13 Identities=23% Similarity=0.504 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 010079 204 LREIKQLEGTREK 216 (518)
Q Consensus 204 LkEIkqLek~Rk~ 216 (518)
+.+|-.|...+..
T Consensus 27 vd~i~~ld~~~r~ 39 (425)
T PRK05431 27 VDELLELDEERRE 39 (425)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666666554
No 274
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=43.10 E-value=1.4e+02 Score=30.15 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 265 GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 299 (518)
Q Consensus 265 ~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LR 299 (518)
.+++.-+.++..|..=+..+..+||+|..+++.|.
T Consensus 26 EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 26 EELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666666555
No 275
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=42.58 E-value=1.3e+02 Score=34.65 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHH-------hhhhhhhcc
Q 010079 102 IQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL-------GKLRTTNNA 167 (518)
Q Consensus 102 I~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L-------~klre~~nA 167 (518)
|.++.-.+.-+..++..+..+|++|.+++..+..++..++..+..++.++..|.-.+ ..+++.|+-
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~p 153 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNP 153 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 556667777788888999999999999999999999999888888877777666433 455555553
No 276
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=42.28 E-value=3.8e+02 Score=27.14 Aligned_cols=151 Identities=20% Similarity=0.240 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHH
Q 010079 177 EELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAV 256 (518)
Q Consensus 177 EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~l 256 (518)
++...-|..||.++ |++.+-+..|-+.|+.++...+..|..-..++.-+.. ..|...=..+-.+
T Consensus 25 ~~~k~yi~~Le~~L----------k~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~------~~ls~~l~~laev 88 (234)
T cd07664 25 EEKQQQFENLDQQL----------RKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDH------TALSRALSQLAEV 88 (234)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------chHHHHHHHHHHH
Confidence 45566677777776 6788889999999999887777655433333332211 0111111122222
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------------HHHHHHHHH
Q 010079 257 WAKISHLEG--------KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA------------YFFQYRALL 316 (518)
Q Consensus 257 r~kIKel~~--------k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~------------~f~~~r~~l 316 (518)
..+|+.+.. .+...=.+|-.+-.-+..+-..|..+|..+..+...+..+.. .+.+...++
T Consensus 89 ~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev 168 (234)
T cd07664 89 EEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEI 168 (234)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Confidence 223333322 133333456666666777777777777777665544443332 222333344
Q ss_pred HHHHHHh--hccCHHHHHHHHHHHHHHHH
Q 010079 317 NEAKAMS--VKKDVQGLKELSNSEVEKYM 343 (518)
Q Consensus 317 ~karela--~~~~v~el~~~~~~eve~fm 343 (518)
+.+..-+ +..+...+-.....||++|-
T Consensus 169 ~~~e~~~~~a~~~fe~Is~~~k~El~rFe 197 (234)
T cd07664 169 KEWEAKVQQGERDFEQISKTIRKEVGRFE 197 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333 24578888889999999994
No 277
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=42.02 E-value=4.6e+02 Score=28.51 Aligned_cols=59 Identities=12% Similarity=0.265 Sum_probs=39.2
Q ss_pred hhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHHHH
Q 010079 150 EMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTREKV 217 (518)
Q Consensus 150 Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSL--sL~EEKklLkEIkqLek~Rk~v 217 (518)
.++.|...+..+. .+...+.+..++..|+..+...++ ....=..++++.+.|+..-..+
T Consensus 8 ~~~~~~~~~~~~~---------~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~ 68 (367)
T PRK00578 8 RLKDLDEKLENIR---------GVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTL 68 (367)
T ss_pred HHHHHHHHHHHHH---------hhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555443 467888999999999998877765 3444446677777776665543
No 278
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=41.29 E-value=2.8e+02 Score=25.28 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 260 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 260 IKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
++.++..+..++..+..|+.-..-+..+.-+=|+.+..+......++.
T Consensus 67 ~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~ 114 (132)
T PF10392_consen 67 IEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQ 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344555566666777777777777777777888888777777766554
No 279
>PRK09343 prefoldin subunit beta; Provisional
Probab=41.27 E-value=2.7e+02 Score=25.18 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 010079 205 REIKQLEGTRE 215 (518)
Q Consensus 205 kEIkqLek~Rk 215 (518)
.+|+.|++...
T Consensus 85 ~~ik~lekq~~ 95 (121)
T PRK09343 85 LRSRTLEKQEK 95 (121)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 280
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.81 E-value=6.4e+02 Score=29.27 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhh
Q 010079 120 RGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTT 164 (518)
Q Consensus 120 R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~ 164 (518)
-++-..|..++-.|..+.++++..+..++.|...|-..-..+.+.
T Consensus 99 aakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~ 143 (772)
T KOG0999|consen 99 AAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKES 143 (772)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344456667777777777777777777777777666666555543
No 281
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=40.65 E-value=2.7e+02 Score=26.42 Aligned_cols=18 Identities=17% Similarity=-0.049 Sum_probs=12.4
Q ss_pred HHHhhhhccCCCCCCCCC
Q 010079 363 SLDMRQLSRDGRIRNPDE 380 (518)
Q Consensus 363 s~~~R~~~~DGR~~~pde 380 (518)
-.++-+++.|+=.++-|.
T Consensus 100 ~av~allD~d~l~l~~dg 117 (155)
T PF06810_consen 100 KAVKALLDLDKLKLDDDG 117 (155)
T ss_pred HHHHHhcCHHHeeeCCCc
Confidence 345566777877777776
No 282
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=40.23 E-value=2.5e+02 Score=24.40 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010079 291 AFANIKELRKQRDEGNAYFFQYRALL 316 (518)
Q Consensus 291 ay~~i~~LRkerde~n~~f~~~r~~l 316 (518)
+-...+.|..+...++..+-.+...+
T Consensus 50 ~mr~~d~l~~e~k~L~~~~~Ks~~~i 75 (96)
T PF08647_consen 50 AMRSKDALDNEMKKLNTQLSKSSELI 75 (96)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333333333333333333333333
No 283
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=40.06 E-value=1.6e+02 Score=32.25 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hH-HHHHHHHHHHHHHhhHhhhHHHHHHHHhhH
Q 010079 97 LTDREIQRRNQARMQLMDELRAKR---GV-RGDLAAQLRSLKTEGRQYKSVMDDKRKEME 152 (518)
Q Consensus 97 ~a~keI~klnq~R~~I~~alk~~R---~~-R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik 152 (518)
++..+++.|+..|..+...+..++ .. ..+++.+++.|+++...+...+.....++.
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555553321 11 345555555555554444444444333333
No 284
>PLN02939 transferase, transferring glycosyl groups
Probab=39.84 E-value=8.1e+02 Score=30.21 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHh
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQ 139 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~ 139 (518)
+.+---|..+++.|=-||++|....+.+.....+...|..+++-|.-....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 131 EDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 456677888999999999999999999999999999999999887665544
No 285
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=39.58 E-value=3.6e+02 Score=28.50 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 253 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 253 id~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
+|-|+.+|-++.+.+..++.++.....++.-.+...+.+...+..|+.++
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444555555444444444444
No 286
>PLN02678 seryl-tRNA synthetase
Probab=39.52 E-value=1.3e+02 Score=33.36 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHH
Q 010079 97 LTDREIQRRNQARMQLMDELRA---KRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (518)
Q Consensus 97 ~a~keI~klnq~R~~I~~alk~---~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L 158 (518)
.+..+++.++..|..+...+.. ....+.+++++++.|..+...+...+.....+|..+...|
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455555555555555532 1234445555555555555555555444444444443333
No 287
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.16 E-value=5.3e+02 Score=27.89 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHh
Q 010079 104 RRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (518)
Q Consensus 104 klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~ 159 (518)
.|......|...+..+..+=.-|..||..+.++.+..+..+.+...+.+.+...+.
T Consensus 242 ~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~ 297 (359)
T PF10498_consen 242 QLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVS 297 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34445555556666667777777777777777777777766666666666665553
No 288
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.79 E-value=1.7e+02 Score=28.13 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 249 VKKESQAVWAKISHLEGKVKALDEEIEALQQ 279 (518)
Q Consensus 249 lKKeid~lr~kIKel~~k~kal~~ei~~Lqe 279 (518)
...++..++.+|+..+..+.+++++...+++
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333333333333
No 289
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.27 E-value=6.7e+02 Score=28.77 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 269 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 269 al~~ei~~LqeEldal~~~rdeay~~i~~LRkerd 303 (518)
+...+++.|+.+..+.++....+.+.+...+++..
T Consensus 216 ~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~ 250 (555)
T TIGR03545 216 KIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLK 250 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445555555555555444444444444444333
No 290
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=38.18 E-value=1.9e+02 Score=23.63 Aligned_cols=47 Identities=13% Similarity=0.269 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 253 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 299 (518)
Q Consensus 253 id~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LR 299 (518)
+..|..++.-..+.+..+++.+-.-+.+++.+......++.++.++.
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555566666666666666666666655555555555554
No 291
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=38.17 E-value=8.2e+02 Score=29.77 Aligned_cols=38 Identities=18% Similarity=0.057 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHH
Q 010079 181 DLIRSLQYRIQHEIIP-LSEEKQILREIKQLEGTREKVM 218 (518)
Q Consensus 181 ~~I~~LE~rIqhgSLs-L~EEKklLkEIkqLek~Rk~v~ 218 (518)
++|..+=+..||.+-. |.+++++-..-.-|...|+.+.
T Consensus 214 D~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s 252 (1265)
T KOG0976|consen 214 DQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCS 252 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhH
Confidence 3444455555555543 5555555555555555555544
No 292
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=38.12 E-value=3.1e+02 Score=24.91 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcc-cCCCCCCCHH---------------------
Q 010079 120 RGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNA-RSGGICSSEE--------------------- 177 (518)
Q Consensus 120 R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nA-r~~~~~~S~E--------------------- 177 (518)
+...+.+..++..++++...+...+......+..+...+.-+...... .+...+....
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Q ss_pred ------HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHH
Q 010079 178 ------ELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKK 251 (518)
Q Consensus 178 ------EID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKK 251 (518)
.++..|.-|+. .++.+.+
T Consensus 85 g~~vE~~~~eA~~~l~~--------------------------------------------------------~~~~l~~ 108 (140)
T PRK03947 85 GYSAEKDLDEAIEILDK--------------------------------------------------------RKEELEK 108 (140)
T ss_pred CEEEEecHHHHHHHHHH--------------------------------------------------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 252 ESQAVWAKISHLEGKVKALDEEIEALQQE 280 (518)
Q Consensus 252 eid~lr~kIKel~~k~kal~~ei~~LqeE 280 (518)
.++.+...|..+.+.+..+...+..+..+
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 109 ALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 293
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=37.64 E-value=3.8e+02 Score=25.78 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcccCCCCCCCHHHH
Q 010079 100 REIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEEL 179 (518)
Q Consensus 100 keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEI 179 (518)
+-|..+...+..|..-....|.+...+..+|..++.+....-...+..-..-...+..|..+. +.- .--|.++|
T Consensus 6 ~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS-----~~f-~~ysE~di 79 (159)
T PF05384_consen 6 KTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVS-----RNF-DRYSEEDI 79 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhh-cccCHHHH
Confidence 334456667777777777788888888888877776654443333322222222222222111 100 11377777
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 010079 180 DDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGT 213 (518)
Q Consensus 180 D~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~ 213 (518)
..--.....-+-.=.|--..|+++...=..|+..
T Consensus 80 k~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErr 113 (159)
T PF05384_consen 80 KEAYEEAHELQVRLAMLREREKQLRERRDELERR 113 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655554443333333333444444443334333
No 294
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=37.25 E-value=8.5e+02 Score=29.71 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=16.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhC
Q 010079 326 KDVQGLKELSNSEVEKYMTLWNN 348 (518)
Q Consensus 326 ~~v~el~~~~~~eve~fm~~wn~ 348 (518)
+++.-+.+-+++++..+|.+.-+
T Consensus 515 ~~~~~~~qs~~~~~~~l~~~l~~ 537 (980)
T KOG0980|consen 515 RTLSNLAQSHNNQLAQLEDLLKQ 537 (980)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHh
Confidence 34666677788899999887644
No 295
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=37.15 E-value=2.9e+02 Score=24.33 Aligned_cols=20 Identities=5% Similarity=0.337 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEG 265 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~ 265 (518)
|..+.+.+..++.++.++..
T Consensus 83 i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 83 VKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 296
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=36.83 E-value=4.6e+02 Score=28.24 Aligned_cols=86 Identities=20% Similarity=0.315 Sum_probs=40.5
Q ss_pred ceEE--eccCCCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh--------HhhhHHH
Q 010079 77 NFYF--IRHRQYDDPK--IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEG--------RQYKSVM 144 (518)
Q Consensus 77 ~fyf--vR~p~pDD~~--lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~--------~~~r~~~ 144 (518)
+|++ |....-+++. |..-|+-+-..+..+...-..+...-..++.....+..+|+.+...- ..|-..+
T Consensus 110 t~rLGsv~L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vL 189 (342)
T PF06632_consen 110 TFRLGSVKLKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVL 189 (342)
T ss_dssp EEEEEEEE-EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeEECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454 3444444543 55566555554444443333332232344455555555554444322 2344566
Q ss_pred HHHHHhhHHHHHHHhhhh
Q 010079 145 DDKRKEMEPLHQALGKLR 162 (518)
Q Consensus 145 ~~K~~Eik~Lqe~L~klr 162 (518)
++|...|..|+..|..++
T Consensus 190 NeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 190 NEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhh
Confidence 666666666666665433
No 297
>PHA01750 hypothetical protein
Probab=36.19 E-value=2e+02 Score=24.11 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 275 EALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 275 ~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
+.|..++.+++-++|.+-..+.+|+.
T Consensus 45 dNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 45 DNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 298
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.90 E-value=8.9e+02 Score=29.55 Aligned_cols=53 Identities=25% Similarity=0.252 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHh
Q 010079 107 QARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (518)
Q Consensus 107 q~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~ 159 (518)
+.+..+-+.+...|.....+..++.++..++..-+-...+-+.+-..|+..+.
T Consensus 344 ~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~ela 396 (980)
T KOG0980|consen 344 QLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELA 396 (980)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444545555667777778888888877777766666666666656666554
No 299
>PRK10698 phage shock protein PspA; Provisional
Probab=35.82 E-value=4.6e+02 Score=26.21 Aligned_cols=15 Identities=7% Similarity=0.144 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhc
Q 010079 178 ELDDLIRSLQYRIQH 192 (518)
Q Consensus 178 EID~~I~~LE~rIqh 192 (518)
-|+.-|..++..+..
T Consensus 28 ~l~q~i~em~~~l~~ 42 (222)
T PRK10698 28 LVRLMIQEMEDTLVE 42 (222)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666654443
No 300
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=35.76 E-value=3e+02 Score=24.02 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCCC---hHHH-HHHHHHHHHHHHHHH
Q 010079 180 DDLIRSLQYRIQHEIIP---LSEE-KQILREIKQLEGTRE 215 (518)
Q Consensus 180 D~~I~~LE~rIqhgSLs---L~EE-KklLkEIkqLek~Rk 215 (518)
+.+|.+||..+..+-.+ +.+| +.+..||+-|+.+-+
T Consensus 2 EdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve 41 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVE 41 (86)
T ss_pred chHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 35789999876443332 5566 788889998887644
No 301
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=35.63 E-value=2.6e+02 Score=30.58 Aligned_cols=77 Identities=18% Similarity=0.379 Sum_probs=49.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHH
Q 010079 85 QYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGV------RGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (518)
Q Consensus 85 ~pDD~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~------R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L 158 (518)
-++-+.+..++..+..++..++..-..|...+...... -.+....+..+......+...+.....++..|++.+
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45558888888888888888877766666666444331 234445555555555566666666666666666666
Q ss_pred hhh
Q 010079 159 GKL 161 (518)
Q Consensus 159 ~kl 161 (518)
...
T Consensus 406 ~~~ 408 (451)
T PF03961_consen 406 ERS 408 (451)
T ss_pred Hhh
Confidence 543
No 302
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=35.50 E-value=2.6e+02 Score=23.19 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 010079 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTE 136 (518)
Q Consensus 90 ~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q 136 (518)
.+..+|+++-..+..|+..-..+...+.....+|..|++++...++.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555556666666666666666666555444
No 303
>PRK11546 zraP zinc resistance protein; Provisional
Probab=35.36 E-value=2.1e+02 Score=27.14 Aligned_cols=44 Identities=30% Similarity=0.235 Sum_probs=21.3
Q ss_pred HHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhh
Q 010079 118 AKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (518)
Q Consensus 118 ~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~kl 161 (518)
++|.+......+|++|-+....=...+....+||..|+..|...
T Consensus 65 ~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 65 ALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444433333334555666666666666533
No 304
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=35.26 E-value=5.6e+02 Score=27.06 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=36.3
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 197 LSEEKQILREI-KQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALD 271 (518)
Q Consensus 197 L~EEKklLkEI-kqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~ 271 (518)
|.-|.+-|-|+ ..|++.|.++..-...+.. .-. .+.+.+...|+.++.|.+.|+-++..+...+
T Consensus 65 LkREnq~l~e~c~~lek~rqKlshdlq~Ke~----------qv~-~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 65 LKRENQSLMESCENLEKTRQKLSHDLQVKES----------QVN-FLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH----------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454444443 6788888887653333211 000 2345677777777777777776666554433
No 305
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=35.11 E-value=4.8e+02 Score=27.62 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=40.2
Q ss_pred HHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhh
Q 010079 117 RAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGK 160 (518)
Q Consensus 117 k~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~k 160 (518)
+.+|+++..+..++..|...+..+|....+.-+||..|++.+-.
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999998753
No 306
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.68 E-value=3.3e+02 Score=32.55 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=67.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFAN---------IKELRKQRDEGNAYFFQYRA 314 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~---------i~~LRkerde~n~~f~~~r~ 314 (518)
.++.+|+.....+.+...-+..++-..+.++.+|+++.+++.....--|.. |-+|.+..++++. -.+--
T Consensus 616 ~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~--t~~~~ 693 (1104)
T COG4913 616 AKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTH--TQSDI 693 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcC--ChhHH
Confidence 455666666666666666666677788889999999999988766544443 4555555555553 12233
Q ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 010079 315 LLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 346 (518)
Q Consensus 315 ~l~karela~~~~v~el~~~~~~eve~fm~~w 346 (518)
.+.++..-+++--+..|+.+|.+||+.-.++-
T Consensus 694 ~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k 725 (1104)
T COG4913 694 AIAKAALDAAQTRQKVLERQYQQEVTECAGLK 725 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666788899999999988765554
No 307
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=34.65 E-value=2.2e+02 Score=30.23 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 010079 249 VKKESQAVWAKISHLE 264 (518)
Q Consensus 249 lKKeid~lr~kIKel~ 264 (518)
|+.+++.+..++..|.
T Consensus 4 l~~~~~~~~~~~r~l~ 19 (378)
T TIGR01554 4 LKEQREEIVAEIRSLL 19 (378)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 308
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=34.60 E-value=2.2e+02 Score=23.73 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
|+++.+++..|.++--...-.+..+-+.+..---++.++-.+--++|.+++.++.++-++
T Consensus 8 l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ELakl 67 (71)
T COG5420 8 LEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKRELAKL 67 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666655555555666666666667778888888888888888888776554
No 309
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.49 E-value=3.2e+02 Score=23.96 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=2.2
Q ss_pred HHHHHh
Q 010079 154 LHQALG 159 (518)
Q Consensus 154 Lqe~L~ 159 (518)
+.+.|.
T Consensus 35 ~~~~l~ 40 (129)
T cd00890 35 AKETLE 40 (129)
T ss_pred HHHHHH
Confidence 333333
No 310
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=34.30 E-value=4.4e+02 Score=27.88 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 267 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 267 ~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
...|+++-..|.=+++-|++...+.-+.+-.|+.++.++..+|-..++....
T Consensus 100 naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~ 151 (302)
T PF09738_consen 100 NAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDS 151 (302)
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666666666666555555444444444
No 311
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=34.26 E-value=66 Score=23.11 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010079 198 SEEKQILREIKQLEGTREKVM 218 (518)
Q Consensus 198 ~EEKklLkEIkqLek~Rk~v~ 218 (518)
.||.+++.|..+|++.|+++.
T Consensus 1 adEqkL~sekeqLrrr~eqLK 21 (32)
T PF02344_consen 1 ADEQKLISEKEQLRRRREQLK 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999854
No 312
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=34.07 E-value=4e+02 Score=28.17 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=3.9
Q ss_pred ChhhHHHHH
Q 010079 349 NKAFRDDYE 357 (518)
Q Consensus 349 ~~~FR~dY~ 357 (518)
+..||..-+
T Consensus 328 ~~~~R~~l~ 336 (344)
T PF12777_consen 328 TPEYRQELL 336 (344)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 344444433
No 313
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=33.98 E-value=6.5e+02 Score=28.07 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=5.4
Q ss_pred hhhhccCCCCC
Q 010079 366 MRQLSRDGRIR 376 (518)
Q Consensus 366 ~R~~~~DGR~~ 376 (518)
+|..+-||-+.
T Consensus 141 ~r~~s~~ga~~ 151 (459)
T KOG0288|consen 141 LRRQSVDGAVP 151 (459)
T ss_pred hhhhhhcCCCc
Confidence 44445555543
No 314
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=33.91 E-value=1.4e+02 Score=31.46 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=8.7
Q ss_pred HhCChhhHHHHHHH
Q 010079 346 WNNNKAFRDDYEKR 359 (518)
Q Consensus 346 wn~~~~FR~dY~k~ 359 (518)
-|++-.|-.+|.+-
T Consensus 207 qNd~~~f~~kY~~e 220 (308)
T PF06717_consen 207 QNDPEKFEEKYYKE 220 (308)
T ss_pred ccChHHHHHhcccc
Confidence 35666676777663
No 315
>PRK15396 murein lipoprotein; Provisional
Probab=33.81 E-value=2e+02 Score=24.62 Aligned_cols=47 Identities=19% Similarity=0.410 Sum_probs=29.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKA 291 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdea 291 (518)
+++.|..+++.|.+++..+.....+++..+..-++|-.-++..+|-.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666543
No 316
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=33.77 E-value=1.4e+02 Score=24.90 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
+++|++++..++.+-.+..-.+-.|.+++..=-.++-.+-++-=.+|..+.++|.++...
T Consensus 4 ~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~ 63 (66)
T PF05082_consen 4 IEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAA 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666655555555555666555556666667777777777777777766543
No 317
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.71 E-value=3.3e+02 Score=30.33 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 272 EEIEALQQEVNDVAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 272 ~ei~~LqeEldal~~~rdeay~~i~~LRkerd 303 (518)
.++..+..++..+..++.++-++|..|+.++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444443333
No 318
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.55 E-value=2.8e+02 Score=24.89 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 255 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 298 (518)
Q Consensus 255 ~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~L 298 (518)
.+..+|..+.+++.+++..+..|-+|...|.-+-+.++..+..+
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444455555444444444444444443
No 319
>PHA03011 hypothetical protein; Provisional
Probab=33.39 E-value=3.6e+02 Score=24.43 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 010079 307 AYFFQYRALLNEAKA 321 (518)
Q Consensus 307 ~~f~~~r~~l~kare 321 (518)
.+....|..+.+.++
T Consensus 99 d~I~~LraeIDkLK~ 113 (120)
T PHA03011 99 DEIHFLRAEIDKLKE 113 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 320
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=33.31 E-value=2.9e+02 Score=23.19 Aligned_cols=23 Identities=4% Similarity=0.130 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 010079 291 AFANIKELRKQRDEGNAYFFQYR 313 (518)
Q Consensus 291 ay~~i~~LRkerde~n~~f~~~r 313 (518)
...++..+++....++.-+-..+
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk 84 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLK 84 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555655555555443333
No 321
>PF14282 FlxA: FlxA-like protein
Probab=33.25 E-value=2.2e+02 Score=25.20 Aligned_cols=21 Identities=10% Similarity=0.324 Sum_probs=11.7
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEG 265 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~ 265 (518)
.|..|++.+..|..+|+.|.+
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 455555555555555555544
No 322
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=33.22 E-value=3.6e+02 Score=24.25 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 247 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
..||+-.-+=+++-..|.+.++.....|..+..|++.+.=.-+.+-..+..|..+.+.
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455556666666666677777777777777777777777777776663
No 323
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=33.10 E-value=1.8e+02 Score=29.44 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=5.9
Q ss_pred eeecCCCC
Q 010079 37 IIFGSHGG 44 (518)
Q Consensus 37 i~fgs~~~ 44 (518)
=.||.||+
T Consensus 64 k~fGRYG~ 71 (217)
T PF10147_consen 64 KLFGRYGL 71 (217)
T ss_pred HHHHhhhh
Confidence 36899883
No 324
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=32.97 E-value=43 Score=25.26 Aligned_cols=44 Identities=5% Similarity=0.031 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCChhhHHHHHHHhHHHHHhhhhccCCCCCCCC
Q 010079 336 NSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRIRNPD 379 (518)
Q Consensus 336 ~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR~~~pd 379 (518)
..+++.|+..-.+|.+||..+..|-...-...+....|-.-.++
T Consensus 3 ~~~l~~Fl~~~~~d~~l~~~l~~~~~~~e~~~lA~~~Gy~ft~~ 46 (49)
T PF07862_consen 3 IESLKAFLEKVKSDPELREQLKACQNPEEVVALAREAGYDFTEE 46 (49)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHcCCCCCHH
Confidence 46799999999999999999999876666666766666554443
No 325
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=32.79 E-value=2.5e+02 Score=24.46 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 273 EIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 273 ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
....|.+|+..+...-...-+.+..||.
T Consensus 37 ~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 37 ARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4566677777777777776677777776
No 326
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=32.67 E-value=1.1e+03 Score=29.62 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHH-HHHHHHHHHhCChhhHHHHHHHhHHHHHhhhhccCC
Q 010079 308 YFFQYRALLNEAKAMSVKKDVQGLKELSNS-EVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDG 373 (518)
Q Consensus 308 ~f~~~r~~l~karela~~~~v~el~~~~~~-eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DG 373 (518)
.+-.....+.+..+.....-+..++.-|+. +|-.| .--+.|.+.|+.-|+.=.-|+|+
T Consensus 1238 DlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf--------~~q~~eiq~n~~ll~~L~~tlD~ 1296 (1439)
T PF12252_consen 1238 DLDKLKGQLQKINQNLVKALINTIRVSLNQMEVKTF--------EEQEKEIQQNLQLLDKLEKTLDD 1296 (1439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------hhhhHHHHHHHHHHHHHHHHhcc
Confidence 444444555555555555445555555542 22333 23467888888877776666664
No 327
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=32.19 E-value=4.4e+02 Score=24.88 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
++..++.++..+...++.+.-.+..+..+...|..++.....++.++-.....+..-+
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433333333333
No 328
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=32.18 E-value=1.6e+02 Score=33.84 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 274 IEALQQEVNDVAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 274 i~~LqeEldal~~~rdeay~~i~~LRkerd 303 (518)
+..|..++.++..+.+.+|..+.+|-.+..
T Consensus 600 ~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~ 629 (638)
T PRK10636 600 LTACLQQQASAKSGLEECEMAWLEAQEQLE 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555544433
No 329
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=31.86 E-value=54 Score=29.78 Aligned_cols=32 Identities=16% Similarity=0.425 Sum_probs=7.6
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 242 MGSDLDGVKKESQAVWAKISHLEGKVKALDEE 273 (518)
Q Consensus 242 ~~~eId~lKKeid~lr~kIKel~~k~kal~~e 273 (518)
++..|.++...++.++.-+..+..++..+.+.
T Consensus 60 Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~ 91 (133)
T PF06148_consen 60 LSTNLVGMDEKIEELRKPLSQFREEVESVRDE 91 (133)
T ss_dssp --------------HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544444444444333333
No 330
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=31.82 E-value=8.4e+02 Score=28.01 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHH
Q 010079 251 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQG 330 (518)
Q Consensus 251 Keid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~e 330 (518)
|+++....++-.+.+.+....++++..+++.-.+-.++-.+-+++..|+-+..++-..+-.+...-+.... ...|
T Consensus 205 KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~a-----E~~E 279 (596)
T KOG4360|consen 205 KELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTA-----ELEE 279 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----HHHH
Q ss_pred HHHHHHHHHHHHHH
Q 010079 331 LKELSNSEVEKYMT 344 (518)
Q Consensus 331 l~~~~~~eve~fm~ 344 (518)
++.-+.-.+..|.+
T Consensus 280 leDkyAE~m~~~~E 293 (596)
T KOG4360|consen 280 LEDKYAECMQMLHE 293 (596)
T ss_pred HHHHHHHHHHHHHH
No 331
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=31.71 E-value=1.8e+02 Score=25.04 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=28.0
Q ss_pred cccceEEec--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010079 74 VIHNFYFIR--HRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRG 121 (518)
Q Consensus 74 ~~~~fyfvR--~p~pDD~~lKakI~~a~keI~klnq~R~~I~~alk~~R~ 121 (518)
.+++..|-. .++++-+.....+..++.+|+.++..+..+...+...+.
T Consensus 49 ~i~~v~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 49 TILSVRFRRDFLPEPEKESDSPELKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred EEEEEEEEEeccCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555543 333344555667777777777777666666655544443
No 332
>PRK14161 heat shock protein GrpE; Provisional
Probab=31.65 E-value=4e+02 Score=25.98 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010079 295 IKELRKQRDEGNAYFFQYRALLNEAKA 321 (518)
Q Consensus 295 i~~LRkerde~n~~f~~~r~~l~kare 321 (518)
+.+|++..-.+.++|.++|+...+-++
T Consensus 35 ~~elkd~~lR~~AefeN~rkR~~ke~~ 61 (178)
T PRK14161 35 IEELKDKLIRTTAEIDNTRKRLEKARD 61 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445566677777766655443
No 333
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.63 E-value=4.1e+02 Score=24.34 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Q 010079 247 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK 326 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~ 326 (518)
..+...++.+......+-...-++..++..+..++.........+......+..+++.++..| .--..+...+ .
T Consensus 30 ~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~-s~~~l~~~L~-----~ 103 (150)
T PF07200_consen 30 QELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY-SPDALLARLQ-----A 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHH-----H
Confidence 334444445544444444444333444444444444444444444444444444444442211 1111222222 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHHHhh
Q 010079 327 DVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMR 367 (518)
Q Consensus 327 ~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R 367 (518)
.+.+.++.|..=++.|+.-=..-+.|=+.|...-...-.||
T Consensus 104 ~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R~ 144 (150)
T PF07200_consen 104 AASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLRR 144 (150)
T ss_dssp HHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777776443445677777776433333333
No 334
>PRK09239 chorismate mutase; Provisional
Probab=31.62 E-value=3.7e+02 Score=23.85 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 266 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 266 k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
.+..+..+|+.|..++-.+-++|-.+-..+..++...
T Consensus 11 ~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~~ 47 (104)
T PRK09239 11 ELAALRQSIDNIDAALIHMLAERFKCTQAVGVLKAEH 47 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3445555666666777777777777777777777654
No 335
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=31.57 E-value=4.5e+02 Score=29.30 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010079 277 LQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALL 316 (518)
Q Consensus 277 LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l 316 (518)
+.+-++.+..++.+++..+.+|..++.++...+-..++.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 336
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=31.57 E-value=2.7e+02 Score=22.26 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHH
Q 010079 90 KIRAKIDLTDREIQ-RRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQA 157 (518)
Q Consensus 90 ~lKakI~~a~keI~-klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~ 157 (518)
+|+.....|-..+. .++.....+......--..+..|++++++|..... .......++.|++.
T Consensus 2 ~Lw~~F~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d-----~~~~~~~~k~l~~~ 65 (77)
T PF03993_consen 2 ELWKRFRAACDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESED-----WKEAAEEIKELQQE 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHH
Confidence 34445555544442 22222222333334556677778888877766432 33444445555543
No 337
>PLN02320 seryl-tRNA synthetase
Probab=31.40 E-value=2.3e+02 Score=32.09 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010079 104 RRNQARMQLMDELRAKRGVRGDLAAQLRS 132 (518)
Q Consensus 104 klnq~R~~I~~alk~~R~~R~eL~~qLka 132 (518)
.+.+.|-++...+..++.+|+.+..++..
T Consensus 97 ~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 97 ELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555556666666666665543
No 338
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=31.22 E-value=2.3e+02 Score=30.04 Aligned_cols=16 Identities=6% Similarity=0.416 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 010079 91 IRAKIDLTDREIQRRN 106 (518)
Q Consensus 91 lKakI~~a~keI~kln 106 (518)
++.++...+.++.+.+
T Consensus 20 m~~~L~~~~~~L~~k~ 35 (344)
T PF12777_consen 20 MQEELEEKQPELEEKQ 35 (344)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 339
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=31.06 E-value=5.9e+02 Score=26.05 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHH
Q 010079 206 EIKQLEGTREKVMA 219 (518)
Q Consensus 206 EIkqLek~Rk~v~a 219 (518)
||+.|+.+-+-+..
T Consensus 44 e~~eLk~qnkli~K 57 (230)
T PF03904_consen 44 EIQELKRQNKLIIK 57 (230)
T ss_pred HHHHHHHhhHHHHH
Confidence 78888888775554
No 340
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=31.06 E-value=37 Score=38.82 Aligned_cols=21 Identities=10% Similarity=-0.116 Sum_probs=9.3
Q ss_pred HHhhhhccCCCCCCCCCCCcc
Q 010079 364 LDMRQLSRDGRIRNPDEKPLV 384 (518)
Q Consensus 364 ~~~R~~~~DGR~~~pde~p~~ 384 (518)
.+...-..-|+.-=-|..|++
T Consensus 403 ~l~~wE~e~g~pFlv~G~~~l 423 (619)
T PF03999_consen 403 KLEEWEEEHGKPFLVDGERYL 423 (619)
T ss_dssp HHHHHHHHHTS--EETTEEHH
T ss_pred HHHHHHHHcCCeEEEcCccHH
Confidence 333444445665555555554
No 341
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=31.05 E-value=1.5e+02 Score=31.29 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVND 283 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeElda 283 (518)
.|..|+..+..-.++|..|..++++++.++..++++.+.
T Consensus 139 rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~ 177 (308)
T PF06717_consen 139 RFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDR 177 (308)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444455555555555555544544444444
No 342
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=30.94 E-value=6.3e+02 Score=26.32 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 010079 175 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVM 218 (518)
Q Consensus 175 S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~ 218 (518)
-.+.|+.++..||.++-+..-+ ..|..|..|++..-.+.
T Consensus 155 ~le~i~~~~~~ie~~l~~~~~~-----~~l~~l~~l~~~l~~lr 193 (322)
T COG0598 155 VLEQIEDELEAIEDQLLASTTN-----EELERLGELRRSLVYLR 193 (322)
T ss_pred HHHHHHHHHHHHHHHHhcCccH-----HHHHHHHHHHHHHHHHH
Confidence 3567888899999988888777 77777777777655443
No 343
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=30.72 E-value=17 Score=33.62 Aligned_cols=55 Identities=11% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHhhccC
Q 010079 273 EIEALQQEVNDVAEKRDKAFANIKELRKQRDE---GNAYFFQYRALLNEAKAMSVKKD 327 (518)
Q Consensus 273 ei~~LqeEldal~~~rdeay~~i~~LRkerde---~n~~f~~~r~~l~karela~~~~ 327 (518)
.+.....-+..|......++.++..|....+- +...+-+-|..+..||+.|.+-.
T Consensus 53 ~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI~qAR~~An~Ik 110 (138)
T PF06009_consen 53 ALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELIAQARDAANRIK 110 (138)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhhee
Confidence 33333444444444445555555555555554 56666667777777888776643
No 344
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=30.52 E-value=7e+02 Score=26.71 Aligned_cols=69 Identities=7% Similarity=0.160 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcc
Q 010079 99 DREIQRRNQARMQLMDELRAKRGVRGDLAAQL----RSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNA 167 (518)
Q Consensus 99 ~keI~klnq~R~~I~~alk~~R~~R~eL~~qL----kaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nA 167 (518)
+-.|..++.-+..|..++.....-...+..++ ..+-+..+.++..+.....+++.+...|..+++..++
T Consensus 226 R~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q 298 (384)
T KOG0972|consen 226 RLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQ 298 (384)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666654444444433333 3344444445555555555555555555555544443
No 345
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=30.45 E-value=86 Score=25.46 Aligned_cols=29 Identities=38% Similarity=0.322 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 010079 171 GICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK 216 (518)
Q Consensus 171 ~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~ 216 (518)
....|++||+.+|.-|+. ||..++..+..
T Consensus 18 Ls~lSv~EL~~RIa~L~a-----------------EI~R~~~~~~~ 46 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEA-----------------EIARLEAAIAK 46 (59)
T ss_pred chhcCHHHHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 357899999999999998 77777777654
No 346
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=30.43 E-value=5.7e+02 Score=25.63 Aligned_cols=17 Identities=18% Similarity=0.513 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhcCC
Q 010079 178 ELDDLIRSLQYRIQHEI 194 (518)
Q Consensus 178 EID~~I~~LE~rIqhgS 194 (518)
.|...|..|+..|+.++
T Consensus 38 ~i~e~i~~Le~~l~~E~ 54 (247)
T PF06705_consen 38 DIKEQIQKLEKALEAEV 54 (247)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555444444
No 347
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.36 E-value=3.7e+02 Score=23.51 Aligned_cols=6 Identities=33% Similarity=0.528 Sum_probs=2.2
Q ss_pred HHHHHH
Q 010079 183 IRSLQY 188 (518)
Q Consensus 183 I~~LE~ 188 (518)
+..|+.
T Consensus 8 ~~~l~~ 13 (129)
T cd00890 8 LQQLQQ 13 (129)
T ss_pred HHHHHH
Confidence 333333
No 348
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=30.30 E-value=5.9e+02 Score=25.74 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 010079 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKI----SHLEGKVKALDEEIEA 276 (518)
Q Consensus 201 KklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kI----Kel~~k~kal~~ei~~ 276 (518)
.-+|.++.++=+.+..++.+.... ..+.... +..++..++|.......++ ....+.+...+..|..
T Consensus 68 ~~iL~ete~~A~~~~~~ae~l~~~-----i~~~l~~-----l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~ 137 (237)
T cd07657 68 KEIMDSTDQLSKLIKQHAEALESG-----TLDKLTL-----LIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQK 137 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888776543321 1111111 1223344444444433332 2233445555556666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010079 277 LQQEVNDVAEKRDKAFANI 295 (518)
Q Consensus 277 LqeEldal~~~rdeay~~i 295 (518)
.-.+...+..+-++++...
T Consensus 138 ~~~e~e~Ar~k~e~a~~~~ 156 (237)
T cd07657 138 LLEDYKAAKSKFEEAVVKG 156 (237)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 6666666666666665543
No 349
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=30.28 E-value=35 Score=30.33 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHhCChhhHHHH
Q 010079 339 VEKYMTLWNNNKAFRDDY 356 (518)
Q Consensus 339 ve~fm~~wn~~~~FR~dY 356 (518)
+..+-.+++....||..|
T Consensus 113 ~~~~~~lk~~~~~~~~~~ 130 (131)
T PF05103_consen 113 REEIEELKRQAEQFRAQF 130 (131)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344445666666666654
No 350
>PRK02793 phi X174 lysis protein; Provisional
Probab=30.00 E-value=3.2e+02 Score=22.67 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 251 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 298 (518)
Q Consensus 251 Keid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~L 298 (518)
..+..|..++.-..+-+..+++-+..-+.+++.+..+...++.++.++
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555565666555555555555555555555544444
No 351
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=30.00 E-value=1.5e+02 Score=33.10 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhh
Q 010079 96 DLTDREIQRRNQARMQLMDELR--AKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEM 151 (518)
Q Consensus 96 ~~a~keI~klnq~R~~I~~alk--~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Ei 151 (518)
-+++++| |+..|-+|.+... ..|.++++|++.|..=......=+.++..|..++
T Consensus 243 TKaEEri--LKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~L 298 (472)
T KOG0709|consen 243 TKAEERI--LKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEEL 298 (472)
T ss_pred hHHHHHH--HHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHH
Confidence 3455544 8999999999884 4688889999988654444443344444444443
No 352
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=29.71 E-value=3.1e+02 Score=22.32 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhhHhhh
Q 010079 87 DDPKIRAKIDLTDREIQRRNQARMQLMDELRAK-RGVRGDLAAQLRSLKTEGRQYK 141 (518)
Q Consensus 87 DD~~lKakI~~a~keI~klnq~R~~I~~alk~~-R~~R~eL~~qLkaLr~q~~~~r 141 (518)
+.+.-+..|..++..|.+..+.-.++..+++.. .+.|..+..+|+..+.+...++
T Consensus 19 ~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 19 SGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665555555554444333 2566666666666655554444
No 353
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=29.69 E-value=5.6e+02 Score=25.27 Aligned_cols=77 Identities=18% Similarity=0.430 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhh----hhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 010079 127 AAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLR----TTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQ 202 (518)
Q Consensus 127 ~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klr----e~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKk 202 (518)
-..|..+..+++.+...+.....+...|+..|.... .+.++++ ....++..|..|.| +|..
T Consensus 47 ~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~-----rl~~~ek~l~~Lk~--e~ev-------- 111 (201)
T PF13851_consen 47 EKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKA-----RLKELEKELKDLKW--EHEV-------- 111 (201)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH--HHHH--------
Confidence 334444455555555555555555555554443111 1111111 23457778888888 3322
Q ss_pred HHHHHHHHHHHHHHHH
Q 010079 203 ILREIKQLEGTREKVM 218 (518)
Q Consensus 203 lLkEIkqLek~Rk~v~ 218 (518)
+.....+|..-|..+-
T Consensus 112 L~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 112 LEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345566666666554
No 354
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=29.63 E-value=5.8e+02 Score=25.47 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=8.7
Q ss_pred HhhhHHHHHHHHhhHHHHHHH
Q 010079 138 RQYKSVMDDKRKEMEPLHQAL 158 (518)
Q Consensus 138 ~~~r~~~~~K~~Eik~Lqe~L 158 (518)
..+-..+.....+++.+|..+
T Consensus 39 a~L~~e~~~L~~q~~s~Qqal 59 (193)
T PF14662_consen 39 AQLAEEITDLRKQLKSLQQAL 59 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444
No 355
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=29.59 E-value=7.2e+02 Score=26.56 Aligned_cols=81 Identities=15% Similarity=0.330 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 010079 202 QILREIKQLEGTREKVMA-NAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDE-EIEALQQ 279 (518)
Q Consensus 202 klLkEIkqLek~Rk~v~a-~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~-ei~~Lqe 279 (518)
.+++.|.+|++.+..+.. |..- -+-+ -+.|.+++..|+..--++...+.+-+. -++.|+.
T Consensus 81 ~LlKkl~~l~keKe~L~~~~e~E----------EE~l--------tn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k 142 (310)
T PF09755_consen 81 TLLKKLQQLKKEKETLALKYEQE----------EEFL--------TNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQK 142 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 567778888888777642 1110 0111 134455555555544455545444332 3566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010079 280 EVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 280 Eldal~~~rdeay~~i~~LRk 300 (518)
.+..+..+....-..+..|+.
T Consensus 143 ~i~~Le~e~~~~q~~le~Lr~ 163 (310)
T PF09755_consen 143 KIERLEKEKSAKQEELERLRR 163 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 666665554444444444444
No 356
>PRK04406 hypothetical protein; Provisional
Probab=29.25 E-value=3.5e+02 Score=22.77 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 253 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 253 id~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerd 303 (518)
++.+.+.|..|+.++.-...-|..|.+-+-.-...++.+-..+..|+.+..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665555555666666555555555555555555544443
No 357
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.11 E-value=3.8e+02 Score=28.77 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=34.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhh
Q 010079 114 DELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLR 162 (518)
Q Consensus 114 ~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klr 162 (518)
...+.+.+.-+.+...+.++..-+..+-+.+...+..++.|...|++..
T Consensus 11 ~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~ 59 (330)
T PF07851_consen 11 KEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCK 59 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555567777778888888888888887777887777776553
No 358
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.02 E-value=9.7e+02 Score=27.86 Aligned_cols=60 Identities=15% Similarity=0.276 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHH
Q 010079 177 EELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAV 256 (518)
Q Consensus 177 EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~l 256 (518)
++|-++|..|..++ ++-+++|+.++..|+.+..++. .+. ..+++++...+.|
T Consensus 584 ~e~qrH~~~l~~~k----------~~QlQ~l~~~~eer~~i~e~a~---~La---------------~R~eea~e~qe~L 635 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQK----------KKQLQDLSYCREERKSLREMAE---RLA---------------DRYEEAKEKQEDL 635 (741)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH---HHH---------------HHHHHHHHhHHHH
Confidence 45666666666644 3457788888888887765433 122 2455555555556
Q ss_pred HHHHHHHH
Q 010079 257 WAKISHLE 264 (518)
Q Consensus 257 r~kIKel~ 264 (518)
...++.|.
T Consensus 636 ~~~~~~L~ 643 (741)
T KOG4460|consen 636 MNRMKKLL 643 (741)
T ss_pred HHHHHHHH
Confidence 55555554
No 359
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=28.98 E-value=6.9e+02 Score=28.17 Aligned_cols=79 Identities=11% Similarity=0.131 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANI-----------KELRKQRDEGNAYFFQYR 313 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i-----------~~LRkerde~n~~f~~~r 313 (518)
++..|+..++.|.-.+--|=.-+..+++++++.|.||.--....-..-..+ .-|+.++-.+...+-.++
T Consensus 480 ~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~ 559 (583)
T KOG3809|consen 480 KMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTK 559 (583)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444577777888888888765544433333332 236666666666777777
Q ss_pred HHHHHHHHHh
Q 010079 314 ALLNEAKAMS 323 (518)
Q Consensus 314 ~~l~karela 323 (518)
..+.++|--.
T Consensus 560 e~i~~~r~~I 569 (583)
T KOG3809|consen 560 EEISKARGRI 569 (583)
T ss_pred HHHHHHHHHH
Confidence 7777766533
No 360
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=28.80 E-value=9.3e+02 Score=27.58 Aligned_cols=227 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhccc
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNAR 168 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr 168 (518)
+..+.+|..+-.+. +-..+-.+--.+.....++.-+.++...+..-...+-.-+..-...|+.+-.+=.+-|...+
T Consensus 228 E~rW~~lq~l~Ee~--l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~-- 303 (531)
T PF15450_consen 228 ESRWQKLQELTEER--LRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKE-- 303 (531)
T ss_pred HHHHHHHHHHHHHH--HHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh--
Q ss_pred CCCCCCCHHHHHHHH----------HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 010079 169 SGGICSSEEELDDLI----------RSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQ 238 (518)
Q Consensus 169 ~~~~~~S~EEID~~I----------~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iq 238 (518)
.+..++.++|...+ -.+-+++-++.+.+..||.-+-+=+- ..+-..|....+.-.-++.-|+ .+
T Consensus 304 -~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv-~~l~~~lkDLd~~~~aLs~rld----~q 377 (531)
T PF15450_consen 304 -KLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSV-AELMRQLKDLDDHILALSWRLD----LQ 377 (531)
T ss_pred -HHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhh----HH
Q ss_pred hhhhccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHH
Q 010079 239 DQLMGSDLDGVKKESQA-VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD-EGNAYFFQYRALL 316 (518)
Q Consensus 239 eq~~~~eId~lKKeid~-lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerd-e~n~~f~~~r~~l 316 (518)
++.++..|++++.+... ++..+..+..=...+...+..+++.++.+-..+.++..+..-++...| .+.+++...-.++
T Consensus 378 EqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV 457 (531)
T PF15450_consen 378 EQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREV 457 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHH
Q ss_pred HHHHHHhhc
Q 010079 317 NEAKAMSVK 325 (518)
Q Consensus 317 ~karela~~ 325 (518)
..+|+-.+.
T Consensus 458 ~~vRqELa~ 466 (531)
T PF15450_consen 458 GAVRQELAT 466 (531)
T ss_pred HHHHHHHHH
No 361
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.78 E-value=3.2e+02 Score=22.27 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHH
Q 010079 109 RMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLH 155 (518)
Q Consensus 109 R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lq 155 (518)
+..|.+.++..+.--..+-.+|+....+++.+...+....++|+.++
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455555555555555666666666666555555555555554443
No 362
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=28.69 E-value=2.4e+02 Score=24.56 Aligned_cols=45 Identities=31% Similarity=0.395 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRD 289 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rd 289 (518)
+++.|..+.+.|.+++..+...+..++.....-++|-..++..+|
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455555555555555555555555555555555555555544
No 363
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.57 E-value=9.2e+02 Score=27.45 Aligned_cols=67 Identities=22% Similarity=0.228 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 010079 125 DLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQIL 204 (518)
Q Consensus 125 eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklL 204 (518)
.|..+++.-.++...++..++...+.+..|+ .. .+ ..+...+++..+-.+|.| ++|
T Consensus 338 dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq-k~-------~a---d~~~KI~~~k~r~~~Ls~-------------RiL 393 (508)
T KOG3091|consen 338 DLRQRLKVQDQEVKQHRIRINAIGERVTELQ-KH-------HA---DAVAKIEEAKNRHVELSH-------------RIL 393 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-------hh---hHHHHHHHHHHHHHHHHH-------------HHH
Confidence 4555566555565566655444444443333 10 10 113345566666666666 445
Q ss_pred HHHHHHHHHHH
Q 010079 205 REIKQLEGTRE 215 (518)
Q Consensus 205 kEIkqLek~Rk 215 (518)
+=|-.++-+|+
T Consensus 394 Rv~ikqeilr~ 404 (508)
T KOG3091|consen 394 RVMIKQEILRK 404 (508)
T ss_pred HHHHHHHHHhc
Confidence 55555555554
No 364
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=28.57 E-value=4.4e+02 Score=23.76 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=37.8
Q ss_pred chhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQ--AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 245 eId~lKKeid--~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
.|..+-..++ ..-.+|+.|.+.+.+.-++|+.|+.+.++.-...+-..+.|....+.+|.+
T Consensus 38 ~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 38 RLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp B-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444 445566666667777777777777777766666666666666666665543
No 365
>PRK00295 hypothetical protein; Provisional
Probab=28.49 E-value=3.3e+02 Score=22.34 Aligned_cols=46 Identities=9% Similarity=0.171 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 253 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 298 (518)
Q Consensus 253 id~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~L 298 (518)
+..|..++.-.++.+..+++.+-.-+.+++.+..+...++..+..+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666666666666666666666665555555555444
No 366
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=28.47 E-value=7.3e+02 Score=26.26 Aligned_cols=78 Identities=10% Similarity=0.136 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Q 010079 260 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEV 339 (518)
Q Consensus 260 IKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~~~~~ev 339 (518)
|+++-..+...++.++....+..++-.++..-..++..+|+.+..+.+--=.+..+ +..--.+|+.++..=|
T Consensus 114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdE--------yE~~EeeLqkly~~Y~ 185 (338)
T KOG3647|consen 114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDE--------YEDCEEELQKLYQRYF 185 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH--------HHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555554443311111111 1122346777777777
Q ss_pred HHHHHH
Q 010079 340 EKYMTL 345 (518)
Q Consensus 340 e~fm~~ 345 (518)
.+|..+
T Consensus 186 l~f~nl 191 (338)
T KOG3647|consen 186 LRFHNL 191 (338)
T ss_pred HHHhhH
Confidence 777765
No 367
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.45 E-value=6.3e+02 Score=30.76 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHH
Q 010079 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVM 144 (518)
Q Consensus 91 lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~ 144 (518)
++++|..++.++-.++ ...+...+..++.+-..+.+.++++..+...++..+
T Consensus 335 lK~ql~~l~~ell~~~--~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~ 386 (913)
T KOG0244|consen 335 LKAQLEPLQVELLSKA--GDELDAEINSLPFENVTLEETLDALLQEKGEERSTL 386 (913)
T ss_pred HHHHHHHHHHHHHhhc--cccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhh
Confidence 4444444444443222 222445666666666666677776666666555544
No 368
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.34 E-value=1.3e+02 Score=28.46 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 010079 249 VKKESQAVWAKISH 262 (518)
Q Consensus 249 lKKeid~lr~kIKe 262 (518)
+++|+++++.++..
T Consensus 45 l~~Ei~~l~~E~~~ 58 (161)
T PF04420_consen 45 LRKEILQLKRELNA 58 (161)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc
Confidence 44444444443333
No 369
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=28.12 E-value=6.4e+02 Score=25.46 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010079 91 IRAKIDLTDREIQRRNQARMQLM 113 (518)
Q Consensus 91 lKakI~~a~keI~klnq~R~~I~ 113 (518)
.+..++.++.++..|...-..+.
T Consensus 43 ~~~~~~~~e~~l~~L~~d~~~L~ 65 (264)
T PF06008_consen 43 QKQQLDPLEKELESLEQDVENLQ 65 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444545444444443333333
No 370
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=28.01 E-value=2e+02 Score=26.82 Aligned_cols=49 Identities=14% Similarity=0.340 Sum_probs=33.6
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 242 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 290 (518)
Q Consensus 242 ~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rde 290 (518)
+.+++.+.+..+.....-++.|+.++.+-+.+|..|..+|+.+......
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~ 126 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKS 126 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777776667777777777777777777777776654433
No 371
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=27.96 E-value=4e+02 Score=26.31 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010079 275 EALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFF 310 (518)
Q Consensus 275 ~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~ 310 (518)
+-|+...+.+-.+.-.+......||.+.++.....|
T Consensus 27 ~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~ 62 (201)
T PRK02195 27 PTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIE 62 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444445555555555444333
No 372
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=27.92 E-value=8e+02 Score=26.51 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELR 117 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk 117 (518)
..+...|..+..+|..|...|..+-.++.
T Consensus 60 ~eL~~~l~~~~~Ei~~L~~~K~~le~aL~ 88 (384)
T PF03148_consen 60 NELERELEELDEEIDLLEEEKRRLEKALE 88 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888777773
No 373
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=27.64 E-value=6.1e+02 Score=25.11 Aligned_cols=163 Identities=17% Similarity=0.212 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhcc---chhHHHHHHH
Q 010079 178 ELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGS---DLDGVKKESQ 254 (518)
Q Consensus 178 EID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~---eId~lKKeid 254 (518)
+....|..||.++ |++.+-+..|-+.|..+....+..|.--..++.-+.... +.. .+.++-..+.
T Consensus 16 ~~k~~i~~Le~~L----------k~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~--Ls~al~~la~~~~ki~ 83 (224)
T cd07623 16 EKQQQIENLDQQL----------RKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTS--LSRALSQLAEVEEKIE 83 (224)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHH
Confidence 3444556666655 556677777888888877766655443333333221100 111 1121222222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHH
Q 010079 255 AVWAKI-SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAY------------FFQYRALLNEAKA 321 (518)
Q Consensus 255 ~lr~kI-Kel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~------------f~~~r~~l~kare 321 (518)
.+.... ...--.+...=.+|-.+..-+..+-..|..++..+..+......+... +.+...++..+..
T Consensus 84 ~~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~ 163 (224)
T cd07623 84 QLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEA 163 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Confidence 221110 000011333334555556666666667777776655554444433332 4444555554443
Q ss_pred Hhh--ccCHHHHHHHHHHHHHHHHHHHhCChhhHH
Q 010079 322 MSV--KKDVQGLKELSNSEVEKYMTLWNNNKAFRD 354 (518)
Q Consensus 322 la~--~~~v~el~~~~~~eve~fm~~wn~~~~FR~ 354 (518)
-+. +.+...+-..+..|+.+|-.-.. .+||.
T Consensus 164 ~~~~a~~~fe~is~~~k~El~rF~~erv--~dfk~ 196 (224)
T cd07623 164 KVDRGQKEFEEISKTIKKEIERFEKNRV--KDFKD 196 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 333 45888999999999999976543 34544
No 374
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=27.56 E-value=3.9e+02 Score=22.75 Aligned_cols=29 Identities=10% Similarity=-0.062 Sum_probs=11.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Q 010079 298 LRKQRDEGNAYFFQYRALLNEAKAMSVKK 326 (518)
Q Consensus 298 LRkerde~n~~f~~~r~~l~karela~~~ 326 (518)
|..+...+....-.....+.-+..+...|
T Consensus 77 l~~q~~~l~~~l~~l~~~~~~~e~~l~~~ 105 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAINFTEEALNSG 105 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333344444444444444444444443
No 375
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=27.29 E-value=1e+03 Score=27.66 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhH
Q 010079 87 DDPKIRAKIDLTDREIQ---RRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKS 142 (518)
Q Consensus 87 DD~~lKakI~~a~keI~---klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~ 142 (518)
.||.+-+.|..+--+.- .+...+.....+..=+..+..++..++.....+...|+.
T Consensus 164 ~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 164 EDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777765544432 112222223334444555666666666666666666654
No 376
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.21 E-value=1.2e+03 Score=28.39 Aligned_cols=96 Identities=19% Similarity=0.184 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Q 010079 260 ISHLEGKVKALDEEIEALQQEVNDV-AEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSE 338 (518)
Q Consensus 260 IKel~~k~kal~~ei~~LqeEldal-~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~~~~~e 338 (518)
|.++.++-+.++..+....+.+|.+ .+.|-+..--|.+-.+++-..-.+||..+..-+.. -...+
T Consensus 672 ~eel~Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~--------------~~~ae 737 (988)
T KOG2072|consen 672 IEELEKERKELQSRLQYQEKKIDHLERAKRLEEIPLIEKAYDERQEEDRELYEAREKQRIE--------------AAIAE 737 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH--------------HHHHH
Confidence 4455555555666666666666654 34444444445555555555555777655543332 22345
Q ss_pred HHHHHHHHhCChhhHHHHHHHhHHHHHhhhh
Q 010079 339 VEKYMTLWNNNKAFRDDYEKRLLQSLDMRQL 369 (518)
Q Consensus 339 ve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~ 369 (518)
-|.-|..|+.-.-|+.||..--..--..|+-
T Consensus 738 ~e~~vk~k~~l~rm~~d~~~f~e~vk~~rqs 768 (988)
T KOG2072|consen 738 RESAVKDKKRLSRMYDDRDKFKEHVKGERQS 768 (988)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhHH
Confidence 5788999999999999988755444444443
No 377
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=27.06 E-value=3.7e+02 Score=22.43 Aligned_cols=19 Identities=5% Similarity=0.274 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 010079 289 DKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 289 deay~~i~~LRkerde~n~ 307 (518)
+..-..+..++.+......
T Consensus 62 ~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 62 QQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 378
>PRK14148 heat shock protein GrpE; Provisional
Probab=27.00 E-value=4.6e+02 Score=26.00 Aligned_cols=28 Identities=7% Similarity=0.016 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010079 292 FANIKELRKQRDEGNAYFFQYRALLNEA 319 (518)
Q Consensus 292 y~~i~~LRkerde~n~~f~~~r~~l~ka 319 (518)
-+.+..|+..+-.+.++|.++|+...+-
T Consensus 53 ~~e~~elkd~~lR~~Ae~eN~rKR~~rE 80 (195)
T PRK14148 53 EDSCDQFKDEALRAKAEMENIRKRAERD 80 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445556666666555443
No 379
>PRK04325 hypothetical protein; Provisional
Probab=26.91 E-value=3.8e+02 Score=22.41 Aligned_cols=46 Identities=9% Similarity=0.203 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 252 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 297 (518)
Q Consensus 252 eid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~ 297 (518)
.+..|..++.-.++.+..|++.+-.-+.+++.+..+..-+..++.+
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556555555555555555555554444444444
No 380
>PF14282 FlxA: FlxA-like protein
Probab=26.78 E-value=4.3e+02 Score=23.38 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010079 252 ESQAVWAKISHLEGKVKALD 271 (518)
Q Consensus 252 eid~lr~kIKel~~k~kal~ 271 (518)
.+..|..+|+.|.+++..|.
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELS 39 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 381
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.29 E-value=2.9e+02 Score=31.08 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 267 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 267 ~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
...+.++|..|+.++..+...++..-..|++|..+...+
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444433
No 382
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=26.28 E-value=7e+02 Score=26.07 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA----NIKELRKQRDEGNA 307 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~----~i~~LRkerde~n~ 307 (518)
|..+-..++.++.. +..++...=++++.|-.++..|+.++-.+.. .-..|+++||.+-.
T Consensus 143 ~n~~~~~L~~~~~~---~~~~i~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~DqRD~ll~ 205 (322)
T TIGR02492 143 FNQTSNELQDLRKG---INAEIKSAVTEINSLLKQIASLNKEIQQVEAKSGQDANDLLDQRDLLLK 205 (322)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHhHHHHHHHHH
Confidence 44444444444442 2334444445667777777777777765443 34678888887655
No 383
>PRK11020 hypothetical protein; Provisional
Probab=26.28 E-value=5.1e+02 Score=23.89 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEG-----KVKALDEEIEALQQEVNDVAEKRDK 290 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~-----k~kal~~ei~~LqeEldal~~~rde 290 (518)
+|..|...+|.++-++..+.. .+..+..++..|..++..++..+..
T Consensus 6 Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~ 56 (118)
T PRK11020 6 EIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQ 56 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555554444432 3555555666666666665555543
No 384
>PF13514 AAA_27: AAA domain
Probab=25.89 E-value=1.3e+03 Score=28.39 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=16.3
Q ss_pred hhhHHHHHHHhHH--HHHhhhhccC---CCCCCCCCCCcc
Q 010079 350 KAFRDDYEKRLLQ--SLDMRQLSRD---GRIRNPDEKPLV 384 (518)
Q Consensus 350 ~~FR~dY~k~~~~--s~~~R~~~~D---GR~~~pde~p~~ 384 (518)
..||.+|.-..+. |-.-+.+|.. |-+.++|..+|+
T Consensus 971 ~~~r~~~~p~vl~~As~~f~~LT~G~Y~~l~~d~d~~~~~ 1010 (1111)
T PF13514_consen 971 ERYREERQPPVLARASEYFSRLTGGRYSRLRVDEDGDKPV 1010 (1111)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhCCCCceeeeccccCccc
Confidence 3456665544332 2233344442 335566665544
No 385
>PRK02119 hypothetical protein; Provisional
Probab=25.66 E-value=4e+02 Score=22.25 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 253 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 253 id~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerd 303 (518)
+..+...|..|+.++.-..+-|..|.+-+-.-...++.+-..+..|+.+..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555555544443
No 386
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=25.63 E-value=9.7e+02 Score=26.76 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHH
Q 010079 286 EKRDKAFANIKELRKQRDEGN---AYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQ 362 (518)
Q Consensus 286 ~~rdeay~~i~~LRkerde~n---~~f~~~r~~l~karela~~~~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~ 362 (518)
..|=....+|.+|+.+.-+.. ..+..-|+.++-+..++....--.+..+.-.+|...|..=+. +-++..-++
T Consensus 90 n~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~~~r~~s~~ga~~~~~~-----d~~v~~~lp 164 (459)
T KOG0288|consen 90 NLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEALKDLGLKDLRRQSVDGAVPRTED-----DHFVEDTLP 164 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcCCCccccC-----chhhhcccc
Confidence 334444555666666554433 355666666777666666555555666677777777766443 446666777
Q ss_pred HHHhhhh
Q 010079 363 SLDMRQL 369 (518)
Q Consensus 363 s~~~R~~ 369 (518)
|.+-+-+
T Consensus 165 S~~~~~l 171 (459)
T KOG0288|consen 165 SRALFVL 171 (459)
T ss_pred hhhhhhh
Confidence 7765544
No 387
>PRK14139 heat shock protein GrpE; Provisional
Probab=25.49 E-value=4.9e+02 Score=25.64 Aligned_cols=19 Identities=16% Similarity=-0.113 Sum_probs=8.7
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 010079 300 KQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 300 kerde~n~~f~~~r~~l~k 318 (518)
+.+-.+..+|.++|+...+
T Consensus 53 d~~lR~~AefeN~rKR~~k 71 (185)
T PRK14139 53 DSFLRAKAETENVRRRAQE 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444455555554443
No 388
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=25.43 E-value=8.5e+02 Score=26.03 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhh
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQY 140 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~ 140 (518)
+.+...|..++++-.. +...+...+.+...|...++.|+...-.+
T Consensus 23 ~~l~~~~~sL~qen~~-------Lk~El~~ek~~~~~L~~e~~~lr~~sv~~ 67 (310)
T PF09755_consen 23 EQLRKRIESLQQENRV-------LKRELETEKARCKHLQEENRALREASVRI 67 (310)
T ss_pred HHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788877775432 33466677888888888888888764443
No 389
>PRK11020 hypothetical protein; Provisional
Probab=25.42 E-value=3.1e+02 Score=25.25 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010079 284 VAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 284 l~~~rdeay~~i~~LRkerd 303 (518)
...+++.+.++|..|+.++.
T Consensus 36 f~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 36 FEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544
No 390
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=25.31 E-value=7.9e+02 Score=25.59 Aligned_cols=91 Identities=18% Similarity=0.305 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHH
Q 010079 175 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEG-TREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKES 253 (518)
Q Consensus 175 S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek-~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKei 253 (518)
|++++.-+|.+|.++|.| |+. +|.+..++...++...++..-++.++++ |++|+++.
T Consensus 10 ~eed~rL~v~~LhHQvlT-----------------LqcQLRDQ~~ahreLQas~dEa~~L~~~L~~k-----l~eLqkk~ 67 (277)
T PF15030_consen 10 SEEDLRLRVQQLHHQVLT-----------------LQCQLRDQGSAHRELQASRDEATRLQDELQGK-----LEELQKKQ 67 (277)
T ss_pred cchhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 254 QAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK 287 (518)
Q Consensus 254 d~lr~kIKel~~k~kal~~ei~~LqeEldal~~~ 287 (518)
....--+.-|+.++..+-.+..+-.-=+..+-.+
T Consensus 68 ~Ea~lAVtPLKak~AslV~kc~eRn~Li~~llqe 101 (277)
T PF15030_consen 68 HEANLAVTPLKAKLASLVQKCRERNRLITHLLQE 101 (277)
T ss_pred hhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
No 391
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=25.06 E-value=8.1e+02 Score=25.64 Aligned_cols=32 Identities=13% Similarity=0.402 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010079 278 QQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 309 (518)
Q Consensus 278 qeEldal~~~rdeay~~i~~LRkerde~n~~f 309 (518)
..+..........+|....+|+....++.+.|
T Consensus 290 ~~~r~~~l~~L~~ay~~y~el~~~l~eG~~FY 321 (342)
T cd08915 290 LDPREEALQDLEASYKKYLELKENLNEGSKFY 321 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34445555566666666666666666665533
No 392
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.02 E-value=7.6e+02 Score=25.31 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 281 VNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 281 ldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
|.-|..+||....+..+|-.+........-..+.++.+
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~ 118 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVES 118 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677776666666666666555544444444444
No 393
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=24.86 E-value=4.4e+02 Score=22.50 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 010079 267 VKALDEEIEAL 277 (518)
Q Consensus 267 ~kal~~ei~~L 277 (518)
+.++...+..|
T Consensus 44 lDa~~~~l~~l 54 (75)
T PF05531_consen 44 LDAQSAQLTTL 54 (75)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 394
>PHA03386 P10 fibrous body protein; Provisional
Probab=24.77 E-value=3.9e+02 Score=23.73 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 268 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 268 kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
++++.++++||.+++.+... +..+..+-.+++.++.
T Consensus 15 kavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~t 50 (94)
T PHA03386 15 QEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDT 50 (94)
T ss_pred HHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHH
Confidence 33344444444444444433 4445555555555444
No 395
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=24.58 E-value=4.7e+02 Score=30.04 Aligned_cols=59 Identities=12% Similarity=0.257 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010079 258 AKISHLEGKVKALDEEIEALQQEVNDV-------AEKRDKAFANIKELRKQRDEGNAYFFQYRALL 316 (518)
Q Consensus 258 ~kIKel~~k~kal~~ei~~LqeEldal-------~~~rdeay~~i~~LRkerde~n~~f~~~r~~l 316 (518)
.+++.++..+.++..++..|..++..- .....+++.++.++..++++++..|-+.-..+
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556665555321 11466677777788888888887777666544
No 396
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=24.53 E-value=5e+02 Score=26.47 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHH
Q 010079 256 VWAKISHLEGKVKALDEEIEALQQEVNDVAEK-----RDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQG 330 (518)
Q Consensus 256 lr~kIKel~~k~kal~~ei~~LqeEldal~~~-----rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~e 330 (518)
...+|+++...+.-++..|..|-.+.+++-.. ==.+|.+++.|+.++.++...+|.--..-.++- -.+..|
T Consensus 112 e~~kI~e~~e~~~~~d~sIg~lg~e~dalakrk~V~~a~~~f~el~rl~~~rkei~~~v~sm~en~gq~t--hqklqv-- 187 (258)
T COG5200 112 EFGKIKEKEELFNRVDESIGELGMEGDALAKRKLVERACSAFNELERLREERKEIKEAVYSMVENNGQGT--HQKLQV-- 187 (258)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhh--hhhhhh--
Confidence 45566677666666666677776666655332 225788899999999999887774322221110 000111
Q ss_pred HHHHHHHHHHHHHHHHhCChhhH--------HHHHHHhHHHHHhhhhccCCCCCCCCCC
Q 010079 331 LKELSNSEVEKYMTLWNNNKAFR--------DDYEKRLLQSLDMRQLSRDGRIRNPDEK 381 (518)
Q Consensus 331 l~~~~~~eve~fm~~wn~~~~FR--------~dY~k~~~~s~~~R~~~~DGR~~~pde~ 381 (518)
=..|.. ++++..+|.-.= --|.. ++|-.++|+---|-++--+-.
T Consensus 188 -C~iCga----yLsrlDtdrrladHf~GklHlGy~~--~R~dl~~llk~~~~sr~~~~~ 239 (258)
T COG5200 188 -CGICGA----YLSRLDTDRRLADHFNGKLHLGYLL--VRSDLADLLKKFGISRVAEIF 239 (258)
T ss_pred -hhhhhh----HHHhcchhhHHHHHhccchhhhHHH--HHHHHHHHHHHhccchhhhcc
Confidence 112221 344444443222 23555 677778888777777644443
No 397
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=24.43 E-value=8.5e+02 Score=25.70 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010079 201 KQILREIKQLEGTREKVM 218 (518)
Q Consensus 201 KklLkEIkqLek~Rk~v~ 218 (518)
+.+|.++..|+..|..+.
T Consensus 194 r~~l~~l~~lk~eR~~~~ 211 (339)
T cd09235 194 RQLMEQVETIKAEREVIE 211 (339)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777777777777754
No 398
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.41 E-value=4.9e+02 Score=23.04 Aligned_cols=11 Identities=36% Similarity=0.417 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 010079 252 ESQAVWAKISH 262 (518)
Q Consensus 252 eid~lr~kIKe 262 (518)
.++.+.+++..
T Consensus 50 Rl~~lE~~l~~ 60 (106)
T PF10805_consen 50 RLQALETKLEH 60 (106)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 399
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=24.39 E-value=3.9e+02 Score=25.81 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=41.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEK-RDKAFANIKELRK 300 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~-rdeay~~i~~LRk 300 (518)
..+.+++.++..|...||.|...+.-+..+++-+..++-+...- .+++-+++.+|+-
T Consensus 72 k~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~ 129 (157)
T COG3352 72 KQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKM 129 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999999998888777665554 4444444444433
No 400
>PRK14158 heat shock protein GrpE; Provisional
Probab=24.24 E-value=5.8e+02 Score=25.29 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=9.8
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 010079 300 KQRDEGNAYFFQYRALLNEA 319 (518)
Q Consensus 300 kerde~n~~f~~~r~~l~ka 319 (518)
+++-.+.++|.++|+...+-
T Consensus 61 d~~lR~~AefeN~RkR~~kE 80 (194)
T PRK14158 61 DKYLRERADLENYRKRVQKE 80 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555554443
No 401
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=24.22 E-value=4.1e+02 Score=25.26 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhcC
Q 010079 179 LDDLIRSLQYRIQHE 193 (518)
Q Consensus 179 ID~~I~~LE~rIqhg 193 (518)
|+.+|..|+.++.+-
T Consensus 59 ~e~RI~~L~~~L~~A 73 (158)
T PRK05892 59 LDDRINELDRRLRTG 73 (158)
T ss_pred HHHHHHHHHHHHHhC
Confidence 555555555555543
No 402
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.13 E-value=4.7e+02 Score=22.60 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhh
Q 010079 91 IRAKIDLTDREIQRR---NQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEM 151 (518)
Q Consensus 91 lKakI~~a~keI~kl---nq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Ei 151 (518)
|...|+.++.-+... ...+..+-..++.+...|..|-.+|+........+...-.+....+
T Consensus 13 L~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL 76 (89)
T PF13747_consen 13 LEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRL 76 (89)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 566666666665522 2334456666667777777777777776666555544444433333
No 403
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.06 E-value=1.3e+03 Score=27.51 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCCCC-------h-HHHHHHHHHHHHHHHHHHHHH
Q 010079 179 LDDLIRSLQYRIQHEIIP-------L-SEEKQILREIKQLEGTREKVM 218 (518)
Q Consensus 179 ID~~I~~LE~rIqhgSLs-------L-~EEKklLkEIkqLek~Rk~v~ 218 (518)
.|..+..++|.+.|--|. | .+||.+=+.+.+|...-..+.
T Consensus 163 ~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~ 210 (716)
T KOG4593|consen 163 LDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQ 210 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444332 2 456666667777776655544
No 404
>PRK14145 heat shock protein GrpE; Provisional
Probab=23.97 E-value=5.3e+02 Score=25.66 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 010079 296 KELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 296 ~~LRkerde~n~~f~~~r~~l~k 318 (518)
..|.+.+-.+.++|-++|+...+
T Consensus 62 ~el~d~~lR~~AEfeN~rkR~~k 84 (196)
T PRK14145 62 QEYLDIAQRLKAEFENYRKRTEK 84 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555554443
No 405
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.82 E-value=5.1e+02 Score=26.18 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=4.8
Q ss_pred HhHHHHHHHHHH
Q 010079 305 GNAYFFQYRALL 316 (518)
Q Consensus 305 ~n~~f~~~r~~l 316 (518)
+..+|.++|+..
T Consensus 66 ~~AEfeN~rkR~ 77 (214)
T PRK14163 66 LQAEYQNYRRRV 77 (214)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 406
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.69 E-value=1.7e+02 Score=29.55 Aligned_cols=62 Identities=21% Similarity=0.456 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhHhhhHHHHH--HHHhhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCCh
Q 010079 125 DLAAQLRSLKTEGRQYKSVMDD--KRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPL 197 (518)
Q Consensus 125 eL~~qLkaLr~q~~~~r~~~~~--K~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL 197 (518)
.+-.+|+.++.+...++..+.. ..+++=.+...|..++. ..|.+..++..|+.++..+|++|
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~-----------eIe~~~~~~~~l~~~v~~sti~i 199 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRS-----------EIEQLEGQLKYLDDRVDYSTITI 199 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhceEEEEE
Confidence 3444555555555555554442 33444455555555442 35667777888888888888874
No 407
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.50 E-value=1.2e+03 Score=27.20 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=8.1
Q ss_pred hccCCCCCCCCCCC
Q 010079 369 LSRDGRIRNPDEKP 382 (518)
Q Consensus 369 ~~~DGR~~~pde~p 382 (518)
...+-|+.+|-.-|
T Consensus 403 ~~~~~rIid~A~~p 416 (726)
T PRK09841 403 AIGNVRIIDPAVTQ 416 (726)
T ss_pred CCCceeeccCCCCC
Confidence 34566777666543
No 408
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.17 E-value=3.5e+02 Score=30.06 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 010079 278 QQEVNDVAEKRDK 290 (518)
Q Consensus 278 qeEldal~~~rde 290 (518)
..+...+..+...
T Consensus 74 ~~e~~~l~~~l~~ 86 (429)
T COG0172 74 IAEVKELKEKLKE 86 (429)
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 409
>PRK14162 heat shock protein GrpE; Provisional
Probab=23.05 E-value=5.6e+02 Score=25.42 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=8.0
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 010079 300 KQRDEGNAYFFQYRALLN 317 (518)
Q Consensus 300 kerde~n~~f~~~r~~l~ 317 (518)
.++-.+.++|.++|+...
T Consensus 60 d~~lR~~AEfeN~rkR~~ 77 (194)
T PRK14162 60 DKYLRSQAEIQNMQNRYA 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444555554443
No 410
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=23.03 E-value=6.4e+02 Score=27.01 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=49.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHh
Q 010079 85 QYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (518)
Q Consensus 85 ~pDD~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~ 159 (518)
.-+++.+.--|+.++-|+. .|-.+...++.+..++..+...++..+.....+...+....+-..++|+.++
T Consensus 83 ~~~~~~H~lml~RL~~EL~----~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~ 153 (355)
T PF09766_consen 83 LTEDDEHQLMLARLEFELE----QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLG 153 (355)
T ss_pred cCCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 3356778888888887764 3556667777777777777777777777777776666666666667776664
No 411
>PRK14140 heat shock protein GrpE; Provisional
Probab=23.02 E-value=6.1e+02 Score=25.11 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=7.3
Q ss_pred HHHHHhHHHHHHHHHHH
Q 010079 301 QRDEGNAYFFQYRALLN 317 (518)
Q Consensus 301 erde~n~~f~~~r~~l~ 317 (518)
.+-.+.++|-++|+...
T Consensus 59 ~~lR~~Ae~eN~rkR~~ 75 (191)
T PRK14140 59 RYLRLQADFENYKRRIQ 75 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444445544443
No 412
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=22.98 E-value=6.4e+02 Score=23.71 Aligned_cols=75 Identities=21% Similarity=0.394 Sum_probs=41.4
Q ss_pred ccCCCCCCcccccCCCCccccc---eEEeccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010079 56 VSNANLPKDVGEEWPEPRVIHN---FYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRS 132 (518)
Q Consensus 56 ~~~~~~p~da~~~~p~~~~~~~---fyfvR~p~pDD~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLka 132 (518)
++|.+..+=.+++||.|.-+.+ =|-- |..|-..++++++.--.+| ++.-+|..|-+. -.|.+.|+.
T Consensus 21 ~sd~~~~~~~vd~~~pP~el~~iLe~y~~--~~~d~~~lr~~L~~YLD~I-Km~RAkY~lENk--------y~L~~tL~~ 89 (132)
T PF09432_consen 21 ISDPEVSEFVVDDWNPPKELQSILEKYNT--PSTDTEELRAQLDRYLDDI-KMERAKYSLENK--------YSLQDTLNQ 89 (132)
T ss_pred ccCCCcceeeecCCCCCHHHHHHHHHHcC--CCccHHHHHHHHHHHHHHH-HHHHHHHhhhhH--------HHHHHHHHH
Confidence 3455555667888988854322 1222 4555567888877777766 344444434332 344555555
Q ss_pred HHHhhHhhh
Q 010079 133 LKTEGRQYK 141 (518)
Q Consensus 133 Lr~q~~~~r 141 (518)
|.-+....|
T Consensus 90 LtkEVn~Wr 98 (132)
T PF09432_consen 90 LTKEVNYWR 98 (132)
T ss_pred HHHHHHHHH
Confidence 555544444
No 413
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.74 E-value=4.7e+02 Score=22.04 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 270 LDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 270 l~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
+...+..+..+++.+......+-+.+.++...+
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 414
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=22.30 E-value=7.2e+02 Score=24.09 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 273 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 273 ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
.++.+..++..+...--+-++.-.+|.+...++...|-+-...+.+
T Consensus 120 ~vp~~~~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii~~lSk 165 (174)
T PF07426_consen 120 NVPELCDKLQKLSQIHLEQQEESEELSEEVQELLQQYNKIILLLSK 165 (174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777777777777777777666655555443
No 415
>PRK14127 cell division protein GpsB; Provisional
Probab=22.24 E-value=5.3e+02 Score=23.37 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=18.8
Q ss_pred eccCCCCChHHHHHHHHHHHHHHHHHH
Q 010079 81 IRHRQYDDPKIRAKIDLTDREIQRRNQ 107 (518)
Q Consensus 81 vR~p~pDD~~lKakI~~a~keI~klnq 107 (518)
..++-||-+++..=++..-..+..+..
T Consensus 18 ~~~RGYd~~EVD~FLd~V~~dye~l~~ 44 (109)
T PRK14127 18 TSMRGYDQDEVDKFLDDVIKDYEAFQK 44 (109)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455779988888888876666655543
No 416
>PHA03386 P10 fibrous body protein; Provisional
Probab=22.16 E-value=3.8e+02 Score=23.84 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010079 257 WAKISHLEGKVKALDEEIEALQ 278 (518)
Q Consensus 257 r~kIKel~~k~kal~~ei~~Lq 278 (518)
++-|+++.+++.+++..++.++
T Consensus 11 r~dIkavd~KVdaLQ~qV~dv~ 32 (94)
T PHA03386 11 LDAVQEVDTKVDALQTQLNGLE 32 (94)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 417
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.98 E-value=1.3e+03 Score=26.87 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010079 268 KALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 312 (518)
Q Consensus 268 kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~ 312 (518)
...=.+|+.|-+++..|+.++-.+-..-+.|+++||.+-.++-++
T Consensus 165 ~~~V~~IN~l~~qIA~LN~qI~~~~g~pNdLlDqRD~ll~eLS~~ 209 (626)
T PRK08871 165 DLGVERINQIALEIRDIHRLMMRTPGPHNDLMDQHEKLVKELSQY 209 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhh
Confidence 333344455555555555544332223456777777665544443
No 418
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=21.94 E-value=1.4e+03 Score=27.26 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------HH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY-----------RA 314 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~-----------r~ 314 (518)
++.+|+++..-..-|.+|...-++++..+..-..++..+.-+++.+-..+..+...+++....|..- ..
T Consensus 596 ~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~ 675 (786)
T PF05483_consen 596 CNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLG 675 (786)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3344444443333344444445555555555555555555555555555555555555555544432 22
Q ss_pred HHHHHHHHhhc--cCHHHHHHHHHHHHHHHHHHHh
Q 010079 315 LLNEAKAMSVK--KDVQGLKELSNSEVEKYMTLWN 347 (518)
Q Consensus 315 ~l~karela~~--~~v~el~~~~~~eve~fm~~wn 347 (518)
...+++-.|.. ++..+..--|.--+--+++|--
T Consensus 676 EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALME 710 (786)
T PF05483_consen 676 EVEKAKLTADEAVKLQEETDLRCQHKIAEMVALME 710 (786)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 3555555566655555555543
No 419
>PRK00736 hypothetical protein; Provisional
Probab=21.76 E-value=4.6e+02 Score=21.55 Aligned_cols=45 Identities=11% Similarity=0.185 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 253 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 297 (518)
Q Consensus 253 id~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~ 297 (518)
+..|..++.-.++-+..|++.+-.-+.+++.+..+...+...+.+
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666665555555555555555554444443
No 420
>PRK14143 heat shock protein GrpE; Provisional
Probab=21.75 E-value=6.3e+02 Score=25.83 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 010079 372 DGRIRNPD 379 (518)
Q Consensus 372 DGR~~~pd 379 (518)
-|-.-||.
T Consensus 173 ~G~~FDP~ 180 (238)
T PRK14143 173 VGQEFDPN 180 (238)
T ss_pred CCCCCChH
Confidence 34444443
No 421
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=21.73 E-value=1.2e+03 Score=26.21 Aligned_cols=74 Identities=22% Similarity=0.380 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Q 010079 261 SHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVE 340 (518)
Q Consensus 261 Kel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~~~~~eve 340 (518)
|+++.-...-.++...|..-|...+++.++|.+--++. .....+-+++|+ +
T Consensus 26 KqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~--------------------------e~kLee~e~~Cn---~ 76 (436)
T PF01093_consen 26 KQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEV--------------------------EEKLEEEEEVCN---E 76 (436)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHH---H
Confidence 44444444445555666666666666555544333322 234556677886 6
Q ss_pred HHHHHHhCChhhHHHHHHHhHHHHHhhhhcc
Q 010079 341 KYMTLWNNNKAFRDDYEKRLLQSLDMRQLSR 371 (518)
Q Consensus 341 ~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~ 371 (518)
..|++|. ==|--|-+||+|+-|+
T Consensus 77 sm~~lWe--------ECkpCL~~tCm~FYt~ 99 (436)
T PF01093_consen 77 SMMALWE--------ECKPCLKQTCMRFYTR 99 (436)
T ss_pred HHHHHHH--------HHHHHHHHHhHHHHhc
Confidence 7889993 2344577777777774
No 422
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=21.65 E-value=2.4e+02 Score=23.21 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRA 118 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~ 118 (518)
+.++.+|+.++.+|-.|=+.|..+...+..
T Consensus 2 ~~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~ 31 (76)
T TIGR01807 2 EELRNKIDAIDDRILDLLSERATYAQAVGE 31 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999888888888877766533
No 423
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=21.65 E-value=1e+03 Score=25.72 Aligned_cols=114 Identities=20% Similarity=0.263 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHH-------H
Q 010079 197 LSEEKQILREIKQLEGTREK-VMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKV-------K 268 (518)
Q Consensus 197 L~EEKklLkEIkqLek~Rk~-v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~-------k 268 (518)
...=|..|.++.+-+...+. ..-|++.....+.++..- +.-|+..+.++..+.-+|+.++++. .
T Consensus 203 d~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KS--------NE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e 274 (391)
T KOG1850|consen 203 DELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKS--------NELFTKFKQEMEKMTKKIKKLEKETLIWRTKWE 274 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44446667777776665543 223555544445544421 2347888999999999999888752 2
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCH
Q 010079 269 ALDEEIEAL-------QQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDV 328 (518)
Q Consensus 269 al~~ei~~L-------qeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v 328 (518)
..+..+=.| .+++..+..+++.+-+=..+|+.+|.+++. .++++..++-+
T Consensus 275 ~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~----------~~~~~e~~v~~ 331 (391)
T KOG1850|consen 275 NANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNK----------KLEDLEAQVSA 331 (391)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH----------HHHHHhcccch
Confidence 222211111 233344444455555555666666666665 56665555444
No 424
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=21.60 E-value=5.1e+02 Score=22.09 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
||.||.+.+.+-..+...+..-..+...|+.-..|++.+....-++...=..++.++.+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 425
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=21.55 E-value=1e+03 Score=25.54 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHH
Q 010079 106 NQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLH 155 (518)
Q Consensus 106 nq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lq 155 (518)
...-..|.-++...-++-..|..+|.+|.++.+.....+.+.+...++++
T Consensus 251 dklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~ 300 (384)
T KOG0972|consen 251 DKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQAS 300 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555566666666777777777777777766555554444443333
No 426
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.49 E-value=1.1e+03 Score=25.95 Aligned_cols=183 Identities=10% Similarity=0.095 Sum_probs=0.0
Q ss_pred cchhhhhcccccc-ccCCCCCCCCCCcceeecCCCCCccccCCCCccccCCCCCCcccccCCCCccccceEEeccCCCCC
Q 010079 10 VESVAEVHNSLAQ-ENGKLDKGPVKDESIIFGSHGGVGELVNGKESNVSNANLPKDVGEEWPEPRVIHNFYFIRHRQYDD 88 (518)
Q Consensus 10 ~~~~~~~~~~~~~-en~~~~~~~~~~~~i~fgs~~~~~~~~~~~~~~~~~~~~p~da~~~~p~~~~~~~fyfvR~p~pDD 88 (518)
+.++--.-.+|-| .++--+..|+.+..-+|||+..+..+.-+...-+.-++.|.+.++..+.....-+ --...+-.
T Consensus 131 ikNkFGSADNI~sl~~~~~~~~~~~~~~~l~~s~~~~~~~ky~S~d~SecSS~tS~S~~~~s~~~~~~~---~~~~~~~~ 207 (395)
T PF10267_consen 131 IKNKFGSADNISSLKDSLDEPNPDSGPRSLSGSSTLTASPKYGSEDSSECSSVTSGSIDANSNSSNSGG---SSQGSSVS 207 (395)
T ss_pred ccCCCCCCCccccccccccccCCCCCCcCCCCCcccccccccCcccccccccCCCCCCCCCCCCCCCCc---cccccccc
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHhhHhhhHHHHH----HHHhhHHHHHHHhh
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRG----VRGDLAAQLRSLKTEGRQYKSVMDD----KRKEMEPLHQALGK 160 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~----~R~eL~~qLkaLr~q~~~~r~~~~~----K~~Eik~Lqe~L~k 160 (518)
......+..+..++..++..-..+...+..++. +-+-+...|..-+.....+-..++. .++||-.|++.|.-
T Consensus 208 ~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~ 287 (395)
T PF10267_consen 208 SQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELAS 287 (395)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhhhcc----cCCCCCCCHHHHHHHHHHHH--HHHhcCCC
Q 010079 161 LRTTNNA----RSGGICSSEEELDDLIRSLQ--YRIQHEII 195 (518)
Q Consensus 161 lre~~nA----r~~~~~~S~EEID~~I~~LE--~rIqhgSL 195 (518)
+-+.-.. |.+-.--..|-+..+|..|| .+.|...+
T Consensus 288 ~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~ 328 (395)
T PF10267_consen 288 MEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQL 328 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhh
No 427
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=21.43 E-value=1e+03 Score=25.53 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 010079 283 DVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSV 324 (518)
Q Consensus 283 al~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~ 324 (518)
.+..-.+++.++...++++.+++-.+.|.+-..++++|-++-
T Consensus 292 ~vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrAR~lVl 333 (336)
T PF05055_consen 292 AVKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRARTLVL 333 (336)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777778888999999999999999999999998764
No 428
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.12 E-value=1e+03 Score=25.38 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 86 YDDPKIRAKIDLTDREIQRRNQARMQLMDEL 116 (518)
Q Consensus 86 pDD~~lKakI~~a~keI~klnq~R~~I~~al 116 (518)
+.-+.+..|+..++.+-..|...-..+....
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et 190 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTET 190 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4457888888888887777776666665443
No 429
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.10 E-value=4.1e+02 Score=31.11 Aligned_cols=64 Identities=13% Similarity=0.249 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFA---NIKELRKQRDEGNAYFFQY 312 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~---~i~~LRkerde~n~~f~~~ 312 (518)
|..+-..++.++. .+..++...=.+|+.|-+++..|+.++-.+.. .-+.|+++||.+-.++-++
T Consensus 143 fn~~~~~L~~l~~---~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eLS~~ 209 (676)
T PRK05683 143 FNSLSSQLNQQNS---NINSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQLNEL 209 (676)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHHHhh
Confidence 3444444444433 22333444444555555555555555544322 2345777776665544433
No 430
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=21.05 E-value=1.5e+03 Score=27.22 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=12.5
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 010079 85 QYDDPKIRAKIDLTDREIQ 103 (518)
Q Consensus 85 ~pDD~~lKakI~~a~keI~ 103 (518)
.|-.+.+..+|+.+..+|+
T Consensus 454 ~~~~~~L~e~IeKLk~E~d 472 (762)
T PLN03229 454 KPSELALNEMIEKLKKEID 472 (762)
T ss_pred CCCChHHHHHHHHHHHHHH
Confidence 4556667777776666665
No 431
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=21.04 E-value=4.4e+02 Score=29.62 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDE----------EIEALQQEVNDVAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~----------ei~~LqeEldal~~~rdeay~~i~~LRkerd 303 (518)
-|++-.++..+.+.||.+.+.-..... ...+++.-++-+..+++.+|.++..-|+.+.
T Consensus 403 dDEvlaeLR~lqaeLk~vS~~N~k~k~~Ll~la~eE~a~qe~~q~lddlDkqI~qaYvKr~r~~kkrK 470 (516)
T KOG4191|consen 403 DDEVLAELRKLQAELKAVSAHNRKKKHDLLRLAPEEMARQEFQQVLDDLDKQIEQAYVKRNRSRKKRK 470 (516)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577888888888888888765333332 2456677788888888888888887777664
No 432
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=20.89 E-value=6.7e+02 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 275 EALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 275 ~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
+-|+...+++..+.-.+...+.++|.+.+.
T Consensus 28 ~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~ 57 (204)
T PRK00373 28 KLLKDKRDELIMEFFDILDEAKKLREEVEE 57 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444
No 433
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=20.77 E-value=5.7e+02 Score=22.26 Aligned_cols=35 Identities=11% Similarity=0.279 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 266 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 266 k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
.+.+|+.-++.|.+..+.|..+..++...-...|.
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~ 68 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRL 68 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444433333333
No 434
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=20.69 E-value=2.4e+02 Score=24.92 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAK 119 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~ 119 (518)
+.++.+|++++.+|-.|=..|..+...+...
T Consensus 7 ~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~ 37 (102)
T TIGR01801 7 EDLRAEVDQLNRQILALISRRGEVVAQIGHA 37 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999998888888888877775433
No 435
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.68 E-value=1.7e+03 Score=27.76 Aligned_cols=73 Identities=16% Similarity=0.077 Sum_probs=42.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhHHHHHhhhhccCCCC
Q 010079 303 DEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLWNNNKAFRDDYEKRLLQSLDMRQLSRDGRI 375 (518)
Q Consensus 303 de~n~~f~~~r~~l~karela~~~~v~el~~~~~~eve~fm~~wn~~~~FR~dY~k~~~~s~~~R~~~~DGR~ 375 (518)
++.+..||+.....-+...-.......-+...|.+.-..|-+.-+..+.+=.||.+-....+.+-..+.|+.+
T Consensus 717 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~~ 789 (1041)
T KOG0243|consen 717 SELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFESIAEDEKQLVEDIKELLSSHDQRNNELLDIAL 789 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554433333334444555666666666666665556667788888766666666566666554
No 436
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=20.61 E-value=9.7e+02 Score=24.92 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Q 010079 250 KKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA-YFFQYRALLN 317 (518)
Q Consensus 250 KKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~-~f~~~r~~l~ 317 (518)
|..+..+...|++|.++-..|..+-+.|+.....+-.+-+++...+..||.++-+++. ..|+++....
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v~ee 157 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTRVIEE 157 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHHhh
Confidence 3334456667788888888888888999999999999999999999999988888775 4555554443
No 437
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=20.46 E-value=2.1e+02 Score=22.21 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMD 114 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~ 114 (518)
+.|..+|+.++.+|..|.+.|..++.
T Consensus 15 d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 15 DNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888877777666543
No 438
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=20.46 E-value=7.7e+02 Score=25.25 Aligned_cols=44 Identities=30% Similarity=0.250 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 010079 292 FANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 346 (518)
Q Consensus 292 y~~i~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~~~~~eve~fm~~w 346 (518)
-..|..|..++.++.. ++..+...|+|.+.+.+ ..+||.+...+
T Consensus 122 ~~~i~~l~~~I~~ll~----------~aE~LGeeG~VdeA~~~-~~~~e~Lk~ek 165 (254)
T PF03194_consen 122 AEKIDELDEKIGELLK----------EAEELGEEGDVDEAQKL-MEEVEKLKEEK 165 (254)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHCCCHHHHHHH-HHHHHHHHHHH
Confidence 4445555555555544 88888999999999877 77888877665
No 439
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.44 E-value=4.2e+02 Score=29.49 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHhhH
Q 010079 124 GDLAAQLRSLKTEGRQYKSVMDDKRKEME 152 (518)
Q Consensus 124 ~eL~~qLkaLr~q~~~~r~~~~~K~~Eik 152 (518)
..++++++.|..+...+.........+++
T Consensus 71 ~~l~~e~~~l~~~l~~~e~~~~~~~~~l~ 99 (429)
T COG0172 71 EELIAEVKELKEKLKELEAALDELEAELD 99 (429)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 440
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=20.38 E-value=9.8e+02 Score=24.87 Aligned_cols=67 Identities=15% Similarity=0.285 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH----HHHHHHhC----ChhhHHHHHHHhHHHHHhh
Q 010079 296 KELRKQRDEGNAYFFQYRALLNEAKAMSVKKDVQGLKELSNSEVE----KYMTLWNN----NKAFRDDYEKRLLQSLDMR 367 (518)
Q Consensus 296 ~~LRkerde~n~~f~~~r~~l~karela~~~~v~el~~~~~~eve----~fm~~wn~----~~~FR~dY~k~~~~s~~~R 367 (518)
..|+.-+|--.+.--+..+-+++..-.+..-.+-- .--.+|.| +||.+.+. +..||++|+.+ .||
T Consensus 61 ~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ihl--~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~-----~rr 133 (280)
T COG5074 61 RKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIHL--ANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQ-----ARR 133 (280)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----HHH
Confidence 34555555444444444444444444333322221 11234455 89998874 77889999874 356
Q ss_pred hh
Q 010079 368 QL 369 (518)
Q Consensus 368 ~~ 369 (518)
|+
T Consensus 134 Qy 135 (280)
T COG5074 134 QY 135 (280)
T ss_pred hh
Confidence 65
No 441
>PRK09239 chorismate mutase; Provisional
Probab=20.36 E-value=6e+02 Score=22.51 Aligned_cols=21 Identities=5% Similarity=0.001 Sum_probs=10.2
Q ss_pred HHHhHHHHHhhhhccCCCCCCCCCC
Q 010079 357 EKRLLQSLDMRQLSRDGRIRNPDEK 381 (518)
Q Consensus 357 ~k~~~~s~~~R~~~~DGR~~~pde~ 381 (518)
.+.+...+++|+.- +.|++..
T Consensus 82 ~~~ii~esir~q~~----i~~~~~~ 102 (104)
T PRK09239 82 LNFIIKEVIRHHER----IAAEHGD 102 (104)
T ss_pred HHHHHHHHHHHHHH----HHhccCC
Confidence 34445555555542 4444444
No 442
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=20.22 E-value=6.7e+02 Score=22.87 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHH-HHHHhcCCCChHHHHHHHHHH-HHHHHHHHHH
Q 010079 175 SEEELDDLIRSL-QYRIQHEIIPLSEEKQILREI-KQLEGTREKV 217 (518)
Q Consensus 175 S~EEID~~I~~L-E~rIqhgSLsL~EEKklLkEI-kqLek~Rk~v 217 (518)
+...+-.+...| ...+.-|-|+..|=|+++.++ .+.+..+..+
T Consensus 18 ~~a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~ 62 (108)
T COG3937 18 LAAETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGEL 62 (108)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 344444444443 344678999999999999886 3444444433
No 443
>PF15294 Leu_zip: Leucine zipper
Probab=20.21 E-value=1e+03 Score=25.04 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHH---HhcCCCChHHHHHHHHHHHHHHHH
Q 010079 173 CSSEEELDDLIRSLQYR---IQHEIIPLSEEKQILREIKQLEGT 213 (518)
Q Consensus 173 ~~S~EEID~~I~~LE~r---IqhgSLsL~EEKklLkEIkqLek~ 213 (518)
..++-.+......-|.. ++ ..++=.|.+.+|.+|...++.
T Consensus 59 htn~lllrql~~qAek~~lkl~-~diselEn~eLLe~i~~~E~~ 101 (278)
T PF15294_consen 59 HTNVLLLRQLFSQAEKWYLKLQ-TDISELENRELLEQIAEFEKQ 101 (278)
T ss_pred HhHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHh
Confidence 44565566655555543 44 667777888999999988766
No 444
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=20.18 E-value=7.2e+02 Score=23.24 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHH
Q 010079 84 RQYDDPKIRAKIDLTDREIQRRNQARMQLMDEL-------RAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQ 156 (518)
Q Consensus 84 p~pDD~~lKakI~~a~keI~klnq~R~~I~~al-------k~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe 156 (518)
-+||-+.|.+-=...-.++.+|-..+.--.... ...-+.-++..+.|+....-...+.+.+..|-.||..|+.
T Consensus 36 ~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~ 115 (131)
T PF04859_consen 36 SPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLRE 115 (131)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356766666554444445555554444322211 1123344444555555555555566667777777777777
Q ss_pred HHhhhh
Q 010079 157 ALGKLR 162 (518)
Q Consensus 157 ~L~klr 162 (518)
.|..+.
T Consensus 116 ~L~~~~ 121 (131)
T PF04859_consen 116 KLDELN 121 (131)
T ss_pred HHHHHH
Confidence 765443
No 445
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=20.09 E-value=5.7e+02 Score=22.07 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 265 GKVKALDEEIEALQQEVNDVAEKRDKAFANI 295 (518)
Q Consensus 265 ~k~kal~~ei~~LqeEldal~~~rdeay~~i 295 (518)
.++.......+.|..=..++....+.+.+.|
T Consensus 53 ~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 53 QELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
Done!