Query 010079
Match_columns 518
No_of_seqs 135 out of 168
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 19:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.7 0.035 1.2E-06 51.6 32.7 62 90-151 3-64 (284)
2 1c1g_A Tropomyosin; contractIl 97.5 0.056 1.9E-06 50.2 33.1 48 91-138 18-65 (284)
3 3na7_A HP0958; flagellar bioge 97.5 0.018 6.2E-07 56.5 22.3 88 114-213 18-105 (256)
4 3na7_A HP0958; flagellar bioge 96.9 0.26 8.8E-06 48.3 23.6 78 244-321 90-167 (256)
5 1i84_S Smooth muscle myosin he 96.6 0.00031 1.1E-08 82.6 0.0 23 94-116 914-936 (1184)
6 1i84_S Smooth muscle myosin he 96.4 0.0045 1.6E-07 72.9 8.2 46 90-135 861-906 (1184)
7 3q8t_A Beclin-1; autophagy, AT 93.7 1.2 4.1E-05 37.8 12.5 90 176-300 6-95 (96)
8 2dfs_A Myosin-5A; myosin-V, in 93.5 5.5 0.00019 46.7 21.9 113 177-307 924-1044(1080)
9 3u59_A Tropomyosin beta chain; 89.2 8.9 0.00031 32.4 13.2 61 246-306 4-64 (101)
10 3hnw_A Uncharacterized protein 88.9 2.7 9.2E-05 37.9 10.1 65 245-309 69-133 (138)
11 3vkg_A Dynein heavy chain, cyt 88.8 48 0.0016 43.4 24.6 60 245-304 2029-2088(3245)
12 3vkg_A Dynein heavy chain, cyt 88.3 35 0.0012 44.6 22.9 49 135-191 1899-1951(3245)
13 2eqb_B RAB guanine nucleotide 87.9 3.3 0.00011 35.5 9.4 61 251-311 5-65 (97)
14 2jee_A YIIU; FTSZ, septum, coi 86.1 4 0.00014 33.8 8.7 61 89-149 9-76 (81)
15 1ic2_A Tropomyosin alpha chain 85.1 13 0.00046 30.1 11.5 19 249-267 4-22 (81)
16 3a7p_A Autophagy protein 16; c 84.1 12 0.0004 34.5 11.6 68 245-312 69-136 (152)
17 3u59_A Tropomyosin beta chain; 84.0 18 0.00062 30.5 13.4 48 255-302 27-74 (101)
18 3oja_B Anopheles plasmodium-re 83.5 36 0.0012 36.0 17.3 60 247-306 505-564 (597)
19 3ol1_A Vimentin; structural ge 82.2 25 0.00084 30.6 13.0 92 201-310 16-107 (119)
20 3u1c_A Tropomyosin alpha-1 cha 81.8 23 0.00078 30.0 13.0 12 247-258 5-16 (101)
21 3i00_A HIP-I, huntingtin-inter 81.0 11 0.00038 33.2 9.9 61 245-305 16-80 (120)
22 2jee_A YIIU; FTSZ, septum, coi 80.1 24 0.00082 29.2 11.4 19 277-295 53-71 (81)
23 3bas_A Myosin heavy chain, str 79.1 18 0.00062 29.9 10.3 65 243-307 20-84 (89)
24 3ghg_A Fibrinogen alpha chain; 78.8 10 0.00035 41.1 10.6 10 91-100 51-60 (562)
25 3ol1_A Vimentin; structural ge 78.6 33 0.0011 29.8 15.4 60 246-305 22-81 (119)
26 1jcd_A Major outer membrane li 77.4 10 0.00035 28.9 7.4 43 254-296 7-49 (52)
27 3ghg_A Fibrinogen alpha chain; 76.9 34 0.0012 37.2 13.9 43 262-304 114-156 (562)
28 3u1c_A Tropomyosin alpha-1 cha 76.6 34 0.0011 28.9 11.7 50 254-303 26-75 (101)
29 3hnw_A Uncharacterized protein 75.8 14 0.00047 33.3 9.2 59 245-303 76-134 (138)
30 2v4h_A NF-kappa-B essential mo 75.7 25 0.00084 30.7 10.3 64 252-319 25-88 (110)
31 3u06_A Protein claret segregat 75.3 7.7 0.00026 40.7 8.5 58 243-300 2-59 (412)
32 1l8d_A DNA double-strand break 75.0 36 0.0012 28.5 11.3 23 245-267 18-40 (112)
33 4etp_A Kinesin-like protein KA 74.6 9.1 0.00031 39.9 8.9 57 244-300 3-59 (403)
34 3mq9_A Bone marrow stromal ant 73.7 51 0.0018 34.0 14.4 120 175-319 349-469 (471)
35 1ic2_A Tropomyosin alpha chain 73.3 34 0.0011 27.7 10.2 45 253-297 22-66 (81)
36 2lw1_A ABC transporter ATP-bin 69.1 33 0.0011 28.1 9.4 56 245-300 23-84 (89)
37 2zqm_A Prefoldin beta subunit 66.1 47 0.0016 27.8 10.1 36 126-161 11-46 (117)
38 3swk_A Vimentin; cytoskeleton, 65.8 55 0.0019 26.9 10.4 58 245-302 22-79 (86)
39 2ocy_A RAB guanine nucleotide 64.5 72 0.0024 29.3 11.4 52 260-311 46-97 (154)
40 3cvf_A Homer-3, homer protein 63.8 48 0.0016 27.2 9.1 66 253-318 8-73 (79)
41 1deq_A Fibrinogen (alpha chain 60.3 65 0.0022 33.6 11.4 27 89-115 63-89 (390)
42 1jcd_A Major outer membrane li 59.6 34 0.0012 26.0 6.9 44 246-289 6-49 (52)
43 1fxk_A Prefoldin; archaeal pro 58.5 76 0.0026 26.1 11.1 29 131-159 11-39 (107)
44 3qh9_A Liprin-beta-2; coiled-c 58.4 76 0.0026 26.2 9.3 60 95-158 18-77 (81)
45 3lay_A Zinc resistance-associa 57.3 92 0.0031 28.9 11.1 22 286-307 113-134 (175)
46 4e61_A Protein BIM1; EB1-like 56.4 42 0.0014 29.0 7.9 31 267-297 20-50 (106)
47 1wt6_A Myotonin-protein kinase 56.1 85 0.0029 25.9 9.2 56 95-154 16-71 (81)
48 3a7p_A Autophagy protein 16; c 54.8 1.3E+02 0.0044 27.6 13.3 7 339-345 130-136 (152)
49 3tnu_B Keratin, type II cytosk 53.7 1.1E+02 0.0038 26.5 12.2 16 247-262 53-68 (129)
50 2dq0_A Seryl-tRNA synthetase; 52.8 39 0.0013 35.8 8.7 20 200-219 40-59 (455)
51 2p22_C Protein SRN2; endosome, 52.5 1.5E+02 0.0053 27.8 12.7 19 338-359 159-177 (192)
52 2dfs_A Myosin-5A; myosin-V, in 52.2 3.5E+02 0.012 31.8 23.9 25 175-199 915-939 (1080)
53 3lay_A Zinc resistance-associa 52.2 48 0.0017 30.8 8.2 59 102-160 73-131 (175)
54 3qne_A Seryl-tRNA synthetase, 49.5 44 0.0015 35.9 8.5 18 201-218 43-60 (485)
55 3swk_A Vimentin; cytoskeleton, 49.4 1.1E+02 0.0037 25.1 11.6 32 274-305 44-75 (86)
56 1wle_A Seryl-tRNA synthetase; 49.3 1.1E+02 0.0039 32.7 11.7 29 274-302 118-146 (501)
57 2v4h_A NF-kappa-B essential mo 48.4 1.4E+02 0.0047 26.0 12.1 55 89-147 27-81 (110)
58 2js5_A Uncharacterized protein 47.9 39 0.0013 27.3 5.8 62 244-305 3-64 (71)
59 1x79_B RAB GTPase binding effe 47.8 1.4E+02 0.0048 26.0 10.8 84 212-306 17-104 (112)
60 2e7s_A RAB guanine nucleotide 47.4 58 0.002 29.3 7.6 48 264-311 38-85 (135)
61 2fxo_A Myosin heavy chain, car 47.2 1.4E+02 0.0049 25.9 15.6 106 201-306 16-124 (129)
62 3mq9_A Bone marrow stromal ant 46.2 1.3E+02 0.0046 30.8 11.5 17 245-261 405-421 (471)
63 1x8y_A Lamin A/C; structural p 45.8 1.2E+02 0.0042 24.7 9.1 20 246-265 5-24 (86)
64 1m1j_A Fibrinogen alpha subuni 45.6 1.6E+02 0.0054 31.6 11.7 95 90-192 62-157 (491)
65 3cvf_A Homer-3, homer protein 45.4 1.1E+02 0.0037 25.1 8.3 25 138-162 51-75 (79)
66 3cve_A Homer protein homolog 1 45.1 1.2E+02 0.0041 24.4 10.9 63 256-318 5-67 (72)
67 2dq0_A Seryl-tRNA synthetase; 45.1 69 0.0023 33.9 9.1 31 274-304 71-101 (455)
68 2dq3_A Seryl-tRNA synthetase; 43.4 44 0.0015 35.0 7.2 62 200-276 39-100 (425)
69 2efr_A General control protein 43.4 1.9E+02 0.0066 26.3 17.1 72 247-318 73-151 (155)
70 2eqb_B RAB guanine nucleotide 42.5 1.6E+02 0.0054 25.1 12.8 65 243-307 4-69 (97)
71 3qne_A Seryl-tRNA synthetase, 41.7 1.2E+02 0.0042 32.5 10.4 13 204-216 32-44 (485)
72 3rmi_A Chorismate mutase prote 40.1 1.8E+02 0.006 24.9 10.0 77 265-341 12-90 (114)
73 1wle_A Seryl-tRNA synthetase; 40.0 1.3E+02 0.0043 32.4 10.2 25 107-131 77-101 (501)
74 2yy0_A C-MYC-binding protein; 39.2 38 0.0013 25.6 4.3 28 245-272 20-47 (53)
75 2w83_C C-JUN-amino-terminal ki 38.8 1.6E+02 0.0055 24.1 8.7 43 102-144 11-53 (77)
76 2odv_A Plectin 1, HD1; plakin 38.0 2.8E+02 0.0095 26.6 17.6 118 173-301 92-219 (235)
77 1ses_A Seryl-tRNA synthetase; 37.8 1.1E+02 0.0036 32.0 9.1 30 274-303 66-95 (421)
78 1gqe_A Release factor 2, RF2; 37.1 2.7E+02 0.0092 28.8 11.8 46 173-218 24-71 (365)
79 1gk4_A Vimentin; intermediate 37.0 1.7E+02 0.0057 23.7 11.6 18 247-264 4-21 (84)
80 1wt6_A Myotonin-protein kinase 36.5 1.8E+02 0.0062 24.0 8.4 30 275-304 41-70 (81)
81 3nmd_A CGMP dependent protein 36.3 1.5E+02 0.0052 23.9 7.7 7 297-303 58-64 (72)
82 3csx_A Putative uncharacterize 36.1 72 0.0025 26.4 5.8 61 245-305 16-76 (81)
83 3o0z_A RHO-associated protein 36.0 2.7E+02 0.0092 25.8 16.1 22 272-293 69-90 (168)
84 3htk_A Structural maintenance 34.9 1.4E+02 0.0048 22.2 8.4 32 269-300 23-54 (60)
85 4etp_A Kinesin-like protein KA 34.7 1E+02 0.0034 32.0 8.3 39 252-290 4-42 (403)
86 3iv1_A Tumor susceptibility ge 33.6 2E+02 0.0067 23.6 9.1 16 91-106 16-31 (78)
87 2d4y_A HAP1, flagellar HOOK-as 33.2 1.6E+02 0.0055 30.7 9.6 65 245-312 79-148 (463)
88 2ke4_A CDC42-interacting prote 32.9 1.5E+02 0.0053 24.9 7.7 28 89-116 18-45 (98)
89 3mq7_A Bone marrow stromal ant 32.6 2.3E+02 0.008 24.9 8.8 37 271-307 70-106 (121)
90 3kyp_A Pfnaps, nucleosome asse 32.3 1E+02 0.0035 28.8 7.1 43 273-318 4-46 (193)
91 3jsv_C NF-kappa-B essential mo 32.2 2.3E+02 0.0079 23.9 10.8 63 253-319 4-66 (94)
92 3m91_A Proteasome-associated A 32.2 1.4E+02 0.0047 22.5 6.4 36 248-283 13-48 (51)
93 1ses_A Seryl-tRNA synthetase; 32.1 1.1E+02 0.0037 32.0 8.0 45 97-141 39-84 (421)
94 1cii_A Colicin IA; bacteriocin 32.0 4.5E+02 0.015 28.3 12.4 79 244-322 349-427 (602)
95 1lwu_C Fibrinogen gamma chain; 32.0 1.2E+02 0.0043 30.7 8.2 44 255-298 9-52 (323)
96 1gqe_A Release factor 2, RF2; 31.9 4.5E+02 0.015 27.2 13.0 39 308-346 72-110 (365)
97 1ecm_A Endo-oxabicyclic transi 31.7 2.2E+02 0.0077 23.6 8.9 73 267-339 7-81 (109)
98 3cve_A Homer protein homolog 1 31.6 2E+02 0.0069 23.1 10.1 23 139-161 46-68 (72)
99 2nrj_A HBL B protein; enteroto 31.1 4.3E+02 0.015 26.7 14.1 17 175-191 177-193 (346)
100 2xnx_M M protein, M1-BC1; cell 31.0 1.5E+02 0.0051 27.0 7.6 47 242-288 64-110 (146)
101 3iv1_A Tumor susceptibility ge 30.7 2.2E+02 0.0076 23.2 9.2 9 272-280 46-54 (78)
102 2v71_A Nuclear distribution pr 29.6 3.6E+02 0.012 25.4 20.5 163 128-322 10-173 (189)
103 2w83_C C-JUN-amino-terminal ki 29.3 2.3E+02 0.008 23.1 9.6 39 262-300 34-72 (77)
104 2yy0_A C-MYC-binding protein; 29.2 1E+02 0.0036 23.2 5.3 15 276-290 23-37 (53)
105 3lss_A Seryl-tRNA synthetase; 28.8 3.3E+02 0.011 29.1 11.1 19 201-219 47-65 (484)
106 3q8t_A Beclin-1; autophagy, AT 28.4 2.6E+02 0.0088 23.3 13.4 59 244-302 11-69 (96)
107 3bas_A Myosin heavy chain, str 28.2 2.4E+02 0.0084 23.0 11.4 54 245-298 15-68 (89)
108 2d8d_A Aroag, phospho-2-dehydr 27.6 2.4E+02 0.0081 22.6 7.9 36 267-302 5-40 (90)
109 2lw1_A ABC transporter ATP-bin 27.4 2.5E+02 0.0084 22.7 8.2 55 249-310 20-80 (89)
110 3m91_A Proteasome-associated A 26.5 2.1E+02 0.007 21.5 7.2 40 266-305 10-49 (51)
111 1d7m_A Cortexillin I; coiled-c 26.4 1.2E+02 0.0041 25.6 5.6 33 130-162 6-38 (101)
112 4fla_A Regulation of nuclear P 26.3 3.6E+02 0.012 24.3 11.5 119 77-216 13-142 (152)
113 4e61_A Protein BIM1; EB1-like 26.1 3.2E+02 0.011 23.6 10.9 36 269-304 8-43 (106)
114 4gkw_A Spindle assembly abnorm 25.8 3.7E+02 0.013 24.2 17.7 37 244-280 119-155 (167)
115 4emc_A Monopolin complex subun 25.8 2.8E+02 0.0097 26.2 8.8 63 89-151 9-71 (190)
116 3ryc_E Stathmin-4; alpha-tubul 25.6 3.8E+02 0.013 24.2 13.5 15 86-100 43-57 (143)
117 3q0x_A Centriole protein; cent 25.5 2.3E+02 0.0078 27.5 8.4 31 276-306 189-219 (228)
118 3efg_A Protein SLYX homolog; x 25.3 2E+02 0.0069 23.2 6.8 53 247-299 10-62 (78)
119 2dq3_A Seryl-tRNA synthetase; 24.9 72 0.0025 33.3 5.1 15 246-260 46-60 (425)
120 3a7o_A Autophagy protein 16; c 24.8 2.7E+02 0.0094 22.4 7.7 42 249-290 23-64 (75)
121 2p22_A Suppressor protein STP2 24.2 4.3E+02 0.015 24.5 14.9 124 89-218 8-161 (174)
122 1t2k_D Cyclic-AMP-dependent tr 23.8 2.2E+02 0.0075 21.5 6.4 10 272-281 43-52 (61)
123 3nmd_A CGMP dependent protein 23.8 2.6E+02 0.009 22.5 7.0 24 260-283 42-65 (72)
124 3ret_A Salicylate biosynthesis 23.4 2.5E+02 0.0084 23.2 7.3 76 267-343 10-87 (101)
125 2q6q_A Spindle POLE BODY compo 23.2 1.5E+02 0.0052 23.7 5.4 70 230-299 1-72 (74)
126 3oja_A Leucine-rich immune mol 23.1 6.2E+02 0.021 25.9 16.1 34 274-307 437-470 (487)
127 2gtv_X CM, chorismate mutase; 22.8 3.1E+02 0.011 23.1 7.9 35 268-302 6-48 (104)
128 4ani_A Protein GRPE; chaperone 22.8 2.9E+02 0.0099 26.4 8.5 28 295-322 75-102 (213)
129 3u06_A Protein claret segregat 22.7 2.5E+02 0.0087 29.2 8.8 37 252-288 4-40 (412)
130 1ci6_A Transcription factor AT 22.5 2.6E+02 0.009 21.4 7.7 42 117-158 19-60 (63)
131 2w6b_A RHO guanine nucleotide 22.2 2.7E+02 0.0092 21.4 6.5 30 261-290 6-35 (56)
132 3uux_B Mitochondrial division 22.1 5.6E+02 0.019 25.0 11.4 76 246-321 151-226 (242)
133 3ret_A Salicylate biosynthesis 21.9 1E+02 0.0035 25.6 4.6 37 84-120 5-42 (101)
134 2v66_B Nuclear distribution pr 21.9 3.9E+02 0.013 23.1 12.4 60 246-312 12-71 (111)
135 3mov_A Lamin-B1; LMNB1, B-type 21.2 3.6E+02 0.012 22.4 9.1 44 245-288 13-60 (95)
136 3o0z_A RHO-associated protein 21.2 4.9E+02 0.017 24.0 18.0 60 246-305 71-130 (168)
137 2efk_A CDC42-interacting prote 21.1 5.3E+02 0.018 24.3 20.6 24 298-321 177-200 (301)
138 3jsv_C NF-kappa-B essential mo 20.9 3.8E+02 0.013 22.6 11.0 69 89-161 5-80 (94)
139 3sja_C Golgi to ER traffic pro 20.6 81 0.0028 25.0 3.4 22 292-313 31-52 (65)
140 3q0x_A Centriole protein; cent 20.5 2.6E+02 0.0088 27.1 7.6 16 305-320 197-212 (228)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.68 E-value=0.035 Score=51.61 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhh
Q 010079 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEM 151 (518)
Q Consensus 90 ~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Ei 151 (518)
.|+.+|..+..++..+...-..+...+.........+...+..+......+...+.....++
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL 64 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666555555555555554444444444444444444444444333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.53 E-value=0.056 Score=50.19 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhH
Q 010079 91 IRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGR 138 (518)
Q Consensus 91 lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~ 138 (518)
+...++.+...+..+......+...+.........+...+..+.....
T Consensus 18 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (284)
T 1c1g_A 18 ALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALK 65 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333333333333333333333333333333
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.50 E-value=0.018 Score=56.55 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=46.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcC
Q 010079 114 DELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHE 193 (518)
Q Consensus 114 ~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIqhg 193 (518)
..+..++.++..+-.++..+..+..+++..+.....++..+...+.++.. .++++..+|.+.+.++.++
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~-----------~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQ-----------TLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHcc
Confidence 34444455555555556666666555555555555555555555544331 3445566666666666554
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 010079 194 IIPLSEEKQILREIKQLEGT 213 (518)
Q Consensus 194 SLsL~EEKklLkEIkqLek~ 213 (518)
+ +-.|=.-+-+||..++..
T Consensus 87 ~-~~kE~~aL~kEie~~~~~ 105 (256)
T 3na7_A 87 K-SERELRSLNIEEDIAKER 105 (256)
T ss_dssp S-SSSHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHH
Confidence 4 333334444555555443
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.93 E-value=0.26 Score=48.31 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=63.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 321 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~kare 321 (518)
.+++.+.++++.+...+..+++.+..+...+..+...+..+......+-..+..++.+++......-.-...+.+.++
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~ 167 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKE 167 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888888888888888888888888888888888888877777766666666554
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.62 E-value=0.00031 Score=82.64 Aligned_cols=23 Identities=4% Similarity=-0.104 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010079 94 KIDLTDREIQRRNQARMQLMDEL 116 (518)
Q Consensus 94 kI~~a~keI~klnq~R~~I~~al 116 (518)
.+..+..++..+.+....+...+
T Consensus 914 ~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 914 MRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.44 E-value=0.0045 Score=72.86 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010079 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKT 135 (518)
Q Consensus 90 ~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~ 135 (518)
.++.++..++..+..+...+..+...+..+..+...+..++...+.
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~ 906 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETE 906 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555555555555555544444433
No 7
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=93.68 E-value=1.2 Score=37.82 Aligned_cols=90 Identities=20% Similarity=0.359 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHH
Q 010079 176 EEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQA 255 (518)
Q Consensus 176 ~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~ 255 (518)
++.+...+..|. .+|..++.++..|++.+..+- .+|..+..+...
T Consensus 6 ~~~l~~eL~~l~----------~eE~~L~~eL~~lEke~~~l~-------------------------~el~~le~E~~~ 50 (96)
T 3q8t_A 6 SEQLQRELKELA----------LEEERLIQELEDVEKNRKVVA-------------------------ENLEKVQAEAER 50 (96)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHhHHHHH-------------------------HHHHHHHHHHHH
Confidence 344555555554 388889999999988887643 134444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 256 VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 256 lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
+...=...-..+.++.-++-.++++++++..+.+-+-..+..|++
T Consensus 51 L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 51 LDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 433222222346666666777777777777777777777777764
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.52 E-value=5.5 Score=46.71 Aligned_cols=113 Identities=15% Similarity=0.194 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhcC---CCChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhH
Q 010079 177 EELDDLIRSLQYRIQHE---IIPLSEE-----KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDG 248 (518)
Q Consensus 177 EEID~~I~~LE~rIqhg---SLsL~EE-----KklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~ 248 (518)
..+...|..|+++++.. ...|.++ ..+..|++.|++....+... ..++.. ....+..
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~----------~~e~~~-----~~~~v~~ 988 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS----------EEEAKN-----ATNRVLS 988 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTHHHHHHH----------HHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----------HHHHHH-----HHHHHHH
Confidence 45666677777766542 2233333 34566677776655443321 111111 1223455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 249 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 249 lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
+..+++.++..+..+.++.+.+...+..+++++ .++...+-+....|+.+.++++.
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L---~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHET---EQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555554322 35555555566666666666664
No 9
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.24 E-value=8.9 Score=32.39 Aligned_cols=61 Identities=8% Similarity=0.169 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 306 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n 306 (518)
++.||++++.++.......+.+..+..++..+......+-.....+-.++..|..+++...
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444444444433333333333333333333333444444444333
No 10
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.88 E-value=2.7 Score=37.89 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYF 309 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f 309 (518)
++-.++.+.+.+...+..+.+++..++.++.+++.+++.+..+..++-..+++|..+.-++..+.
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777777777787777777777777777777777776665543
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.77 E-value=48 Score=43.40 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=36.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
++..++.++..+..+|..+.+++.+...+...|+.+.+.+..+.+.|-.=|..|-.++..
T Consensus 2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~R 2088 (3245)
T 3vkg_A 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGR 2088 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 345555555555555555555555555566666666666666666666666666666543
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.28 E-value=35 Score=44.64 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=26.3
Q ss_pred HhhHhhhHHHHHHHHhhHHHHH----HHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHh
Q 010079 135 TEGRQYKSVMDDKRKEMEPLHQ----ALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQ 191 (518)
Q Consensus 135 ~q~~~~r~~~~~K~~Eik~Lqe----~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIq 191 (518)
+-...|+..+.+|+.++...+. -|.||.+... .|+++...+..++-.+.
T Consensus 1899 eli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~--------~V~~l~~~L~~~~~~L~ 1951 (3245)
T 3vkg_A 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEA--------QVKDLQVSLAQKNRELD 1951 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 3344556666666666554444 3456665443 45556655555555443
No 13
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.92 E-value=3.3 Score=35.45 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010079 251 KESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 311 (518)
Q Consensus 251 Keid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~ 311 (518)
++++.++.+|..+...+..+..++..|+.++..-...|..+-.....+..++..+...+|.
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666667777888889999999999999999999999999999999998886
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.10 E-value=4 Score=33.84 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHH
Q 010079 89 PKIRAKIDLTDR-------EIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRK 149 (518)
Q Consensus 89 ~~lKakI~~a~k-------eI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~ 149 (518)
+.+.++|..|-. +|..|+.....+.......++.|..|..+...|++++..+.+.+.+.+.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666655 6667777777777777777777777777777777777766655444333
No 15
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.11 E-value=13 Score=30.08 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010079 249 VKKESQAVWAKISHLEGKV 267 (518)
Q Consensus 249 lKKeid~lr~kIKel~~k~ 267 (518)
|++++..++.......+.+
T Consensus 4 ikkKm~~lk~e~d~a~~~~ 22 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRA 22 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333333
No 16
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.09 E-value=12 Score=34.46 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 312 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~ 312 (518)
.|..|+.++..++.+|+.+...+..-.+.+..|++|+.+++-+-+.+-.++..|.++-+.+-.-|-..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888887777655544
No 17
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.03 E-value=18 Score=30.46 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 255 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 255 ~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
.+..+++.++.....+..++.+|+..+..+-...+.+...+..+...+
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444333
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.53 E-value=36 Score=36.03 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010079 247 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGN 306 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n 306 (518)
+.+.+.+..+......+..+.......++..+++++.+..++++.-..+..-+++..++.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 334444444444444444444444444444444444444444443333333333333333
No 19
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.21 E-value=25 Score=30.63 Aligned_cols=92 Identities=10% Similarity=0.148 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 201 KQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQE 280 (518)
Q Consensus 201 KklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeE 280 (518)
--+-.+|..|+++...+. ..++. +-.+|+.++-..++.+.+...-...-..+..++..|.+.
T Consensus 16 ~~ye~~I~~LR~qid~~~---~e~a~---------------l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~ 77 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLT---NDKAR---------------VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQD 77 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHH---------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 345677777777755433 22222 122455555555555554433333334455566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010079 281 VNDVAEKRDKAFANIKELRKQRDEGNAYFF 310 (518)
Q Consensus 281 ldal~~~rdeay~~i~~LRkerde~n~~f~ 310 (518)
+|.++-.|-.+-..+..|+.++.=+...|-
T Consensus 78 lD~~~l~r~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 78 VDNASLARLDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666777777766665444443
No 20
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=81.83 E-value=23 Score=30.00 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHH
Q 010079 247 DGVKKESQAVWA 258 (518)
Q Consensus 247 d~lKKeid~lr~ 258 (518)
+.||++++.++.
T Consensus 5 daIKkKm~~lk~ 16 (101)
T 3u1c_A 5 DAIKKKMQMLKL 16 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 21
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=80.97 E-value=11 Score=33.25 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=49.6
Q ss_pred chhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEG----KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~----k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
.|+.|+.+++.+++.+..+.- .+..+...|+.|..+|+.-...++.+......||.+...+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777766653 4777889999999999999999999999999999888765
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.11 E-value=24 Score=29.18 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010079 277 LQQEVNDVAEKRDKAFANI 295 (518)
Q Consensus 277 LqeEldal~~~rdeay~~i 295 (518)
|..+...++.++..--.+|
T Consensus 53 L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 23
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=79.10 E-value=18 Score=29.91 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=46.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 243 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 243 ~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
..+|..++..+.......+++...+..+..+.+.|+.++..+-..+..+......|-.++.+++.
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777778888888888888888888766666666666666666666666554
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.80 E-value=10 Score=41.09 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 010079 91 IRAKIDLTDR 100 (518)
Q Consensus 91 lKakI~~a~k 100 (518)
|+-.|+..+.
T Consensus 51 LQglLdkqEr 60 (562)
T 3ghg_A 51 MKGLIDEVNQ 60 (562)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhHHhhcC
Confidence 4444444444
No 25
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=78.63 E-value=33 Score=29.84 Aligned_cols=60 Identities=15% Similarity=0.313 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
|..+|++++.+...-..+.-++..++..++.++.....-...|..+=+.+..||+..|..
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHH
Confidence 344444444443333333333333333333333333333444555555555555555543
No 26
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=77.43 E-value=10 Score=28.87 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 254 QAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIK 296 (518)
Q Consensus 254 d~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~ 296 (518)
+.|.+++..|..++..|+.+++.|..+...++++=..+..+|+
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444455555555555555555555555555555555554
No 27
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.91 E-value=34 Score=37.16 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 262 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 262 el~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
+|+..+.-|+.+|+.-...+..|...+...+.+|+.|---+|.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444443
No 28
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=76.63 E-value=34 Score=28.94 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 254 QAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 254 d~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerd 303 (518)
+.+..+++.++.....+..+|.+|+..+..+-...+.+-..+........
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444433333
No 29
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=75.77 E-value=14 Score=33.26 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerd 303 (518)
+++.+..+++.+...|..++.++..++.++..+..++..+..+.+.+-.++..|-.+..
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555556666666666666666655554443
No 30
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=75.72 E-value=25 Score=30.68 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010079 252 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 319 (518)
Q Consensus 252 eid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~ka 319 (518)
+++.|..++...++.+.+.+.+|+.|..++.. +++..+.+.-|+.|.+--..+|..-|.+.-++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q----~~~~lE~I~vLkaQv~IY~~DF~aERadREkl 88 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ----HKIVMETVPVLKAQADIYKADFQAERHAREKL 88 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccchhhHHHH
Confidence 45577777777777787788888888776655 66666889999999999889999988877664
No 31
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.28 E-value=7.7 Score=40.70 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=49.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 243 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 243 ~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
+.+-++|..+++.++.++.++..+.+.+..++..+.+++......|..+++.+.+|+.
T Consensus 2 ~~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456788888889999999999899999999999999999999999999999998875
No 32
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=74.98 E-value=36 Score=28.52 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=11.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKV 267 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~ 267 (518)
+|+.|+..+..+.++|..+...+
T Consensus 18 ~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 18 ERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444443
No 33
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=74.57 E-value=9.1 Score=39.94 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=48.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
.+|+.++.++..++.++.++...++.+..++..+.+++..-...|..+++.+.+|+.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 357788888888888888888888888899999999999999999999999998864
No 34
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=73.72 E-value=51 Score=34.01 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHH
Q 010079 175 SEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQ-LEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKES 253 (518)
Q Consensus 175 S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkq-Lek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKei 253 (518)
...++...|...=..+-.|.++..+ +|+++.. +++..+...+ +.+.- + --..|++++
T Consensus 349 ~~~~~~~~~~~~~~~vl~G~~t~ee---al~~~~~~i~~~l~~~~~-------------~~e~~-~-----~~~~~~~~~ 406 (471)
T 3mq9_A 349 QMSAFWYAVRTAVINAASGRQTVDE---ALKDAQTRITAARDGLRA-------------VMEAR-N-----VTHLLQQEL 406 (471)
T ss_dssp THHHHHHHHHHHHHHHHHSSSCHHH---HHHHHHHHHHHHHHHHHH-------------HHHHH-H-----HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHHHHHhhHH-------------HHHhh-h-----HHHHHHHHH
Confidence 3356666666666677788888643 3333321 2222221111 11111 1 124466667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010079 254 QAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 319 (518)
Q Consensus 254 d~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~ka 319 (518)
+.++..+-.++.+....+-.+-.|++-|+.-..+.. ++|.+|-.++.++|..+.+.+..+...
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 407 TEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777777778877776666633 588888888888888777766665543
No 35
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=73.34 E-value=34 Score=27.67 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 253 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKE 297 (518)
Q Consensus 253 id~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~ 297 (518)
.+.+..+++..+........+|.+|+..+..+-...+.+-..+..
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444444444443333333
No 36
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=69.12 E-value=33 Score=28.14 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKA------LDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~ka------l~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
+|+.|-..|..+.++|..|...+.. --..+..|..++..+....+.+|..+-+|-.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554422 1135667777777777777777777766643
No 37
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=66.13 E-value=47 Score=27.75 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhh
Q 010079 126 LAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKL 161 (518)
Q Consensus 126 L~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~kl 161 (518)
++.++..+..+...+...+.....+++.+..++..|
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=65.81 E-value=55 Score=26.91 Aligned_cols=58 Identities=10% Similarity=0.204 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
+++-++-..+..+.+...=...-..+..++..|...+|.++--|-.+-.++..|..++
T Consensus 22 e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 22 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433322222333444555555555555555555555555555544
No 39
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.48 E-value=72 Score=29.27 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010079 260 ISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 311 (518)
Q Consensus 260 IKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~ 311 (518)
+..+......+..++..|+.++..-...|-.+-.....+..+.+++...+|.
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556778889999999999999999999999999999999998886
No 40
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=63.82 E-value=48 Score=27.25 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 253 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 253 id~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
.+.+..++.+++.....+...+..|+..+.+...+++.+-.++..|-..+|-+-.++...|.-+.+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444555666666667777777788888888888888888888887777777776666666665554
No 41
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.26 E-value=65 Score=33.64 Aligned_cols=27 Identities=4% Similarity=0.004 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDE 115 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~a 115 (518)
-.|+..|+.|...+..+.+.-..+...
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y 89 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTL 89 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 345666666666665554443333333
No 42
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.61 E-value=34 Score=25.99 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRD 289 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rd 289 (518)
++.|-.+++.|..++..|...+.+++.++...++|-.-++..+|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555555555555555555555555555555555555544
No 43
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=58.46 E-value=76 Score=26.06 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=10.6
Q ss_pred HHHHHhhHhhhHHHHHHHHhhHHHHHHHh
Q 010079 131 RSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (518)
Q Consensus 131 kaLr~q~~~~r~~~~~K~~Eik~Lqe~L~ 159 (518)
..+.++...+...+.....+++.+..++.
T Consensus 11 ~~lq~~~~~l~~q~~~l~~~~~e~~~~~~ 39 (107)
T 1fxk_A 11 QQLQQQAQAISVQKQTVEMQINETQKALE 39 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 44
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=58.39 E-value=76 Score=26.19 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHH
Q 010079 95 IDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (518)
Q Consensus 95 I~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L 158 (518)
...++.-|+++|..|.. +..+-++|..+-..|++-.++...++..+..+-.+|..|++.|
T Consensus 18 ~~~~E~L~qEi~~Lr~k----v~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 18 QRKAEELLQELRHLKIK----VEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34556667777877774 4566788888888899988888888888888888888888776
No 45
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=57.28 E-value=92 Score=28.94 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 010079 286 EKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 286 ~~rdeay~~i~~LRkerde~n~ 307 (518)
++++.+.+++.+||.++.....
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544443
No 46
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=56.45 E-value=42 Score=29.03 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 267 VKALDEEIEALQQEVNDVAEKRDKAFANIKE 297 (518)
Q Consensus 267 ~kal~~ei~~LqeEldal~~~rdeay~~i~~ 297 (518)
+.++..+++.|...++.+-.+||=.|.+|..
T Consensus 20 i~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 20 IGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555544433
No 47
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=56.06 E-value=85 Score=25.91 Aligned_cols=56 Identities=25% Similarity=0.357 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHH
Q 010079 95 IDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPL 154 (518)
Q Consensus 95 I~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~L 154 (518)
-..++.+| +++..|.+.+...|..-..+-.+|+....+++.+...+..+.++|..|
T Consensus 16 QSALeaEI----qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 16 QEALEEEV----LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555 455577778877888777777888877777777766655555555443
No 48
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.85 E-value=1.3e+02 Score=27.58 Aligned_cols=7 Identities=14% Similarity=0.525 Sum_probs=3.6
Q ss_pred HHHHHHH
Q 010079 339 VEKYMTL 345 (518)
Q Consensus 339 ve~fm~~ 345 (518)
|+|||..
T Consensus 130 V~RWM~r 136 (152)
T 3a7p_A 130 VARWLKK 136 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 49
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.67 E-value=1.1e+02 Score=26.53 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 010079 247 DGVKKESQAVWAKISH 262 (518)
Q Consensus 247 d~lKKeid~lr~kIKe 262 (518)
+.++.....|...|.+
T Consensus 53 ~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 53 DNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3333333333333333
No 50
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=52.77 E-value=39 Score=35.76 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010079 200 EKQILREIKQLEGTREKVMA 219 (518)
Q Consensus 200 EKklLkEIkqLek~Rk~v~a 219 (518)
=+.++.++.+|+..|+.++.
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk 59 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAV 59 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36778888899988887653
No 51
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=52.52 E-value=1.5e+02 Score=27.79 Aligned_cols=19 Identities=16% Similarity=0.571 Sum_probs=9.8
Q ss_pred HHHHHHHHHhCChhhHHHHHHH
Q 010079 338 EVEKYMTLWNNNKAFRDDYEKR 359 (518)
Q Consensus 338 eve~fm~~wn~~~~FR~dY~k~ 359 (518)
+|+.|+... .+.|..|+-|
T Consensus 159 dv~~Fl~~y---~~~R~~yH~R 177 (192)
T 2p22_C 159 DLDQFIKNY---LDIRTQYHLR 177 (192)
T ss_dssp HHHHHHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHH---HHHHHHHHHH
Confidence 444444333 4556667644
No 52
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=52.17 E-value=3.5e+02 Score=31.76 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCChHH
Q 010079 175 SEEELDDLIRSLQYRIQHEIIPLSE 199 (518)
Q Consensus 175 S~EEID~~I~~LE~rIqhgSLsL~E 199 (518)
++..+......||.+|..=+..|.+
T Consensus 915 ~~~~l~~~~~~LE~kl~eLq~rL~~ 939 (1080)
T 2dfs_A 915 SVERYKKLHIGLENKIMQLQRKIDE 939 (1080)
T ss_dssp -------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666555555544
No 53
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=52.16 E-value=48 Score=30.84 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhh
Q 010079 102 IQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGK 160 (518)
Q Consensus 102 I~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~k 160 (518)
..++++.|.+-.....+++.+......+|.+|...-.-=.+.+....++|..|+..+..
T Consensus 73 q~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 73 QATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555556555543332334566777777777776653
No 54
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=49.50 E-value=44 Score=35.88 Aligned_cols=18 Identities=6% Similarity=0.078 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010079 201 KQILREIKQLEGTREKVM 218 (518)
Q Consensus 201 KklLkEIkqLek~Rk~v~ 218 (518)
+.++.++.+|+..|+.++
T Consensus 43 r~~~~~~~~l~~~rn~~s 60 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQ 60 (485)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566778888888888755
No 55
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=49.44 E-value=1.1e+02 Score=25.13 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 274 IEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 274 i~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
...+..++..++...|.+|=....|-.+.+-+
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL 75 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESL 75 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 56
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.33 E-value=1.1e+02 Score=32.74 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 274 IEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 274 i~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
...|..+...+.++...+...+.++..++
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 57
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=48.37 E-value=1.4e+02 Score=26.01 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDK 147 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K 147 (518)
+.|+.++..|++.+.......+.+...+ .++.+-.+++.-|++|..-|+.-+..-
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei----~q~~~~lE~I~vLkaQv~IY~~DF~aE 81 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEA----EQHKIVMETVPVLKAQADIYKADFQAE 81 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 7799999999998877665555444443 335555566777777766665544443
No 58
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=47.91 E-value=39 Score=27.31 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=43.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
.+|++|++++..++++-.+..-.+-.+.+++..=-.++-.+-++-=.+|..+.+++++...+
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 64 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASL 64 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888777766666666666666655556677777777777777777777766543
No 59
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=47.84 E-value=1.4e+02 Score=25.98 Aligned_cols=84 Identities=10% Similarity=0.185 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 010079 212 GTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEE----IEALQQEVNDVAEK 287 (518)
Q Consensus 212 k~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~e----i~~LqeEldal~~~ 287 (518)
..++.+.+-++.++.+.+.+..+. .+-++++..|..++...+..+..++.. -+.++.++..|...
T Consensus 17 ql~~qL~k~~~~r~~Le~~w~~k~-----------E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~ 85 (112)
T 1x79_B 17 QANDQLEKTMKDKQELEDFIKQSS-----------EDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQS 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555556655555544322 223334444444444433333333332 35668888899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 010079 288 RDKAFANIKELRKQRDEGN 306 (518)
Q Consensus 288 rdeay~~i~~LRkerde~n 306 (518)
|...+.++..|..+-|-+.
T Consensus 86 Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 86 REQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHTC------------
T ss_pred HHHHHHHHHHHHhhccchh
Confidence 9999999888887665443
No 60
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.35 E-value=58 Score=29.31 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010079 264 EGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQ 311 (518)
Q Consensus 264 ~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~ 311 (518)
...+..+..++..|+.++..-...|..+-.....+..+...+...+|.
T Consensus 38 ~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe 85 (135)
T 2e7s_A 38 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 85 (135)
T ss_dssp HHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445667778888888888889999999999999999999988886
No 61
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=47.20 E-value=1.4e+02 Score=25.90 Aligned_cols=106 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHHhh--hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 201 KQILREIKQLEGTREKVMA-NAAMRAKIQESMGKKEDIQDQ--LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEAL 277 (518)
Q Consensus 201 KklLkEIkqLek~Rk~v~a-~~a~ra~iq~s~~~ke~iqeq--~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~L 277 (518)
+..=.+|..|+.......+ ...+...+...+.++..++.+ .-...+.+.-..+..+...--.|..++..+...+...
T Consensus 16 ~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleee 95 (129)
T 2fxo_A 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDE 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010079 278 QQEVNDVAEKRDKAFANIKELRKQRDEGN 306 (518)
Q Consensus 278 qeEldal~~~rdeay~~i~~LRkerde~n 306 (518)
.+....+...+..+-..+..|+++++.+.
T Consensus 96 ee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 96 EEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 62
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=46.18 E-value=1.3e+02 Score=30.81 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=9.1
Q ss_pred chhHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKIS 261 (518)
Q Consensus 245 eId~lKKeid~lr~kIK 261 (518)
+|+++++....++.+-.
T Consensus 405 ~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 405 ELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhh
Confidence 35555555555555543
No 63
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=45.80 E-value=1.2e+02 Score=24.70 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEG 265 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~ 265 (518)
|+.++.....+.+.|.+++.
T Consensus 5 ie~L~~q~~~Le~~l~e~E~ 24 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLED 24 (86)
T ss_dssp -------CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 64
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=45.65 E-value=1.6e+02 Score=31.56 Aligned_cols=95 Identities=8% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhh-HHHHHHHhhhhhhhccc
Q 010079 90 KIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEM-EPLHQALGKLRTTNNAR 168 (518)
Q Consensus 90 ~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Ei-k~Lqe~L~klre~~nAr 168 (518)
.++..|..+...+..+.+.-..+...++.+.+.-+.-..+.+....-..+|-..++.++.-| ..+...+..|+-+++
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~-- 139 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQN-- 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc
Q 010079 169 SGGICSSEEELDDLIRSLQYRIQH 192 (518)
Q Consensus 169 ~~~~~~S~EEID~~I~~LE~rIqh 192 (518)
.++++...|.+||--|..
T Consensus 140 ------~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 140 ------SIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp ------HHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHH
No 65
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=45.45 E-value=1.1e+02 Score=25.14 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=15.1
Q ss_pred HhhhHHHHHHHHhhHHHHHHHhhhh
Q 010079 138 RQYKSVMDDKRKEMEPLHQALGKLR 162 (518)
Q Consensus 138 ~~~r~~~~~K~~Eik~Lqe~L~klr 162 (518)
+.+-..++.|+.+|..|++.|.++-
T Consensus 51 k~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 51 GRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 3344446667777777777666543
No 66
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=45.10 E-value=1.2e+02 Score=24.43 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 256 VWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 256 lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
+..++.+++.....+...+..++..+..-..+++.+-.++..|-..+|-+-.++...|.-+.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344556666666667777777777777777777777777777777777666666666655544
No 67
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.06 E-value=69 Score=33.88 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 274 IEALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 274 i~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
...|..+...++++...+-+.+.++..+++.
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555543
No 68
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=43.39 E-value=44 Score=34.96 Aligned_cols=62 Identities=21% Similarity=0.488 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 200 EKQILREIKQLEGTREKVMANAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEA 276 (518)
Q Consensus 200 EKklLkEIkqLek~Rk~v~a~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~ 276 (518)
=+.++.++.+|+..|+.++ +.+++... .+.+...++.+...+..+|+.++.++..+.+++..
T Consensus 39 ~r~~~~~~~~l~~~~n~~s----------k~i~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 39 RREIIKRLEALRSERNKLS----------KEIGKLKR-----EGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHTTGGGS-----SCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHhh-----cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999998765 33433111 12234455555555555555555555444444443
No 69
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=43.39 E-value=1.9e+02 Score=26.34 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 247 DGVKKESQAVWAKISHLEGK-------VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~~k-------~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
+....+|..+..++++.... +..+...|+.|.+++..-+.+...+...+...-.++..+...||..-..++.
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 33444444555555554433 4444445555555554444444444444444444444445566665555443
No 70
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.51 E-value=1.6e+02 Score=25.06 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=45.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhH
Q 010079 243 GSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR-DEGNA 307 (518)
Q Consensus 243 ~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker-de~n~ 307 (518)
+.+++.+|.+++.+..+.+.+..++..+...+..-+.....+-..+..+-..+..|...+ ++.|.
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~ 69 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN 69 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777777777777777777777777777777777777777777776666654 45554
No 71
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=41.74 E-value=1.2e+02 Score=32.46 Aligned_cols=13 Identities=23% Similarity=-0.002 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 010079 204 LREIKQLEGTREK 216 (518)
Q Consensus 204 LkEIkqLek~Rk~ 216 (518)
+.+|-.|...|..
T Consensus 32 ~~~~~~ld~~~r~ 44 (485)
T 3qne_A 32 VDEIIAEYKEWVK 44 (485)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555554
No 72
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=40.15 E-value=1.8e+02 Score=24.92 Aligned_cols=77 Identities=8% Similarity=0.127 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc--CHHHHHHHHHHHHHH
Q 010079 265 GKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK--DVQGLKELSNSEVEK 341 (518)
Q Consensus 265 ~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~--~v~el~~~~~~eve~ 341 (518)
+.+..+..+|+.|..++-.+-.+|-.+...+..++.....---.--.-...+..+..++..+ +-..++.+...-++-
T Consensus 12 ~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~Ii~~ 90 (114)
T 3rmi_A 12 SELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKARYNLPAVDPLREQYQIKRLRKLAIDTHFDPDFAEKFLKFIIKE 90 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 34556666677777777788888888888888877654311112222334555566665433 344555555444443
No 73
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=39.97 E-value=1.3e+02 Score=32.37 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 010079 107 QARMQLMDELRAKRGVRGDLAAQLR 131 (518)
Q Consensus 107 q~R~~I~~alk~~R~~R~eL~~qLk 131 (518)
+.|-.+...+..++++|+.+..+|.
T Consensus 77 ~~~r~~~~~~~~l~~~rn~~sk~i~ 101 (501)
T 1wle_A 77 QELRQLREQIRSLEEEKEAVTEAVR 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443
No 74
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.19 E-value=38 Score=25.64 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDE 272 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ 272 (518)
+++.|+.+.+.++.++..|..+...++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555555544444433
No 75
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=38.77 E-value=1.6e+02 Score=24.05 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHH
Q 010079 102 IQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVM 144 (518)
Q Consensus 102 I~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~ 144 (518)
+..|-..-.++....+++.--++.||.+++.|..++..++.++
T Consensus 11 vEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El 53 (77)
T 2w83_C 11 VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGEL 53 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333333445555556666677888888888888866665443
No 76
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=38.00 E-value=2.8e+02 Score=26.60 Aligned_cols=118 Identities=14% Similarity=0.230 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhhh-hHHhh--hhccch
Q 010079 173 CSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGT---REKVMANAAMRAKIQESMGKKE-DIQDQ--LMGSDL 246 (518)
Q Consensus 173 ~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~---Rk~v~a~~a~ra~iq~s~~~ke-~iqeq--~~~~eI 246 (518)
..++.+|+..-..|+.-.... |+.+..||.+|+++ ...|-.-+.+. .+-+..++ .+++. .+.. .
T Consensus 92 g~~~~di~~~W~~Le~ae~eR------e~aL~~el~RlerLe~La~kf~rka~~~---e~~L~~~~~~L~~d~~~l~~-~ 161 (235)
T 2odv_A 92 GYHPLDVEKEWGKLHVAILER------EKQLRSEFERLEALQRIVTKLQMEAGLA---EEQLNQADALLQSDVRLLAA-G 161 (235)
T ss_dssp TCSHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTT-T
T ss_pred CCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhcch-h
Confidence 467999999999999866544 45555566555444 33333222221 12222222 11111 0111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 010079 247 DGVKKESQAVWAKISHLEGKVKALDEEIEALQ----QEVNDVAEKRDKAFANIKELRKQ 301 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~~k~kal~~ei~~Lq----eEldal~~~rdeay~~i~~LRke 301 (518)
..+ +..+++...|..+.+.+..+.+....|. -+.+.++.....+...+..|+..
T Consensus 162 ~a~-k~~e~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~r~~~l~~~w~~L~~~ 219 (235)
T 2odv_A 162 KVP-QRAGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTE 219 (235)
T ss_dssp CCC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 112 2355666655555555555555555552 23344444555555555555443
No 77
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=37.83 E-value=1.1e+02 Score=32.03 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 274 IEALQQEVNDVAEKRDKAFANIKELRKQRD 303 (518)
Q Consensus 274 i~~LqeEldal~~~rdeay~~i~~LRkerd 303 (518)
...|..+...++++...+-..+.++..+++
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 78
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=37.14 E-value=2.7e+02 Score=28.80 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHHHHH
Q 010079 173 CSSEEELDDLIRSLQYRIQHEII--PLSEEKQILREIKQLEGTREKVM 218 (518)
Q Consensus 173 ~~S~EEID~~I~~LE~rIqhgSL--sL~EEKklLkEIkqLek~Rk~v~ 218 (518)
+...+.+..++..|+..+...++ ....=.++++|.+.|+..-..+.
T Consensus 24 ~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~ 71 (365)
T 1gqe_A 24 YLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLD 71 (365)
T ss_dssp HTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999998887665 34455677888888877755443
No 79
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=36.99 E-value=1.7e+02 Score=23.71 Aligned_cols=18 Identities=17% Similarity=0.376 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010079 247 DGVKKESQAVWAKISHLE 264 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~ 264 (518)
+.++.....+...|.+++
T Consensus 4 ~~l~~~~~sLE~~l~e~e 21 (84)
T 1gk4_A 4 DALKGTNESLERQMREME 21 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 80
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=36.50 E-value=1.8e+02 Score=23.98 Aligned_cols=30 Identities=7% Similarity=0.286 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 275 EALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 275 ~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
-..+.+|.....+-.++-.++..|+++..+
T Consensus 41 i~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 41 QNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433
No 81
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.33 E-value=1.5e+02 Score=23.87 Aligned_cols=7 Identities=29% Similarity=0.406 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 010079 297 ELRKQRD 303 (518)
Q Consensus 297 ~LRkerd 303 (518)
.|+.+.|
T Consensus 58 ~LqseLD 64 (72)
T 3nmd_A 58 MLQNELD 64 (72)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3443333
No 82
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=36.10 E-value=72 Score=26.35 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=43.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
+|++|++++..++.+-.+..-.+-.|-+++..=-.++-.+-++-=.+|..+.++++++...
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 76 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIW 76 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888887766666666777777766667777777777777888888877776654
No 83
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=36.03 E-value=2.7e+02 Score=25.84 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010079 272 EEIEALQQEVNDVAEKRDKAFA 293 (518)
Q Consensus 272 ~ei~~LqeEldal~~~rdeay~ 293 (518)
.++..|+.++..-+.-|.....
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333333
No 84
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=34.89 E-value=1.4e+02 Score=22.21 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 269 ALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 269 al~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
.....+.++...++.+......+...|..|..
T Consensus 23 ~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 23 LKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433
No 85
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.73 E-value=1e+02 Score=32.04 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 252 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 290 (518)
Q Consensus 252 eid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rde 290 (518)
+++.+..+|..+..+...+...+..++.++..+.++-.+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666655555555544333
No 86
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=33.62 E-value=2e+02 Score=23.55 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 010079 91 IRAKIDLTDREIQRRN 106 (518)
Q Consensus 91 lKakI~~a~keI~kln 106 (518)
++..+.+.+.+++.|+
T Consensus 16 l~E~~~q~qaEl~sLr 31 (78)
T 3iv1_A 16 MKEEMDRAQAELNALK 31 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHH
Confidence 4455555555555555
No 87
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=33.20 E-value=1.6e+02 Score=30.70 Aligned_cols=65 Identities=9% Similarity=0.107 Sum_probs=39.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAF-----ANIKELRKQRDEGNAYFFQY 312 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay-----~~i~~LRkerde~n~~f~~~ 312 (518)
.|..+-..++.++. .+..++...=.+|+.|-.++..|+.++..+- ..=+.|+++||.+-.++-++
T Consensus 79 ~~n~~~~~L~~~~~---~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 79 QFKTTDQYLRDQDK---QVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHHhh
Confidence 45555555555554 3334455555667777777777777776542 34557999998876654443
No 88
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=32.92 E-value=1.5e+02 Score=24.93 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDEL 116 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~al 116 (518)
..|..+|+.++++|.+..+.|..|..-+
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~Km~ 45 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALKKMK 45 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999998876443
No 89
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.55 E-value=2.3e+02 Score=24.85 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 271 DEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 271 ~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
.+.+..|+.|+..++.+.+++...+..||.+...++.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3456777777777777777777777778877665543
No 90
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=32.26 E-value=1e+02 Score=28.81 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010079 273 EIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNE 318 (518)
Q Consensus 273 ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~k 318 (518)
.+..||.+++.+.++ +...+.+|..+...+..-+|+.|..+-+
T Consensus 4 ~L~~iQ~e~~~l~~~---~~~e~~~le~ky~~~~~p~y~kR~~iI~ 46 (193)
T 3kyp_A 4 DFEDIQKDIEQLDIK---CAHEQMNIQKQYDEKKKPLFEKRDEIIQ 46 (193)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 356667777766664 4556777888888888888888877765
No 91
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=32.24 E-value=2.3e+02 Score=23.95 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010079 253 SQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEA 319 (518)
Q Consensus 253 id~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~ka 319 (518)
++.|..++....+-+.+.+..|+.|.++... .....+.+.-|+.+.+--..+|..-|.+.-++
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q----~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl 66 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQ----HKIVMETVPVLKAQADIYKADFQAERHAREKL 66 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666676776766777776664433 33444778889998888888998888777664
No 92
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.15 E-value=1.4e+02 Score=22.50 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 248 GVKKESQAVWAKISHLEGKVKALDEEIEALQQEVND 283 (518)
Q Consensus 248 ~lKKeid~lr~kIKel~~k~kal~~ei~~LqeElda 283 (518)
+++.+++.+.++-..|.+-+.....+|..|.++++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 93
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.12 E-value=1.1e+02 Score=31.99 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhhHhhh
Q 010079 97 LTDREIQRRNQARMQLMDELRA-KRGVRGDLAAQLRSLKTEGRQYK 141 (518)
Q Consensus 97 ~a~keI~klnq~R~~I~~alk~-~R~~R~eL~~qLkaLr~q~~~~r 141 (518)
.+..+++.|++.|..+...+.. ......+|+.+++.|..+...+.
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLE 84 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555444432 12333444444444444444333
No 94
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=32.04 E-value=4.5e+02 Score=28.34 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAM 322 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karel 322 (518)
++-+.|++.++..+++|..+..-+.+++..++.+.-+.+.+......+.+.-..++++....+...-+..+...+...+
T Consensus 349 ae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~~aI 427 (602)
T 1cii_A 349 AEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKAT 427 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHHHH
No 95
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=31.96 E-value=1.2e+02 Score=30.71 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 255 AVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 298 (518)
Q Consensus 255 ~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~L 298 (518)
.+..+|..++..+......|..|+..+..+..+++.+-..|..|
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555555555544444443333333
No 96
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=31.93 E-value=4.5e+02 Score=27.16 Aligned_cols=39 Identities=10% Similarity=-0.042 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Q 010079 308 YFFQYRALLNEAKAMSVKKDVQGLKELSNSEVEKYMTLW 346 (518)
Q Consensus 308 ~f~~~r~~l~karela~~~~v~el~~~~~~eve~fm~~w 346 (518)
.|.....++..+.+|+...+-.++.+++..|+..+-...
T Consensus 72 ~~~~~~~d~~~~~el~~~e~D~e~~~~a~~e~~~l~~~l 110 (365)
T 1gqe_A 72 QMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKL 110 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 455555566666777655434467777777766655443
No 97
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=31.68 E-value=2.2e+02 Score=23.63 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc--CHHHHHHHHHHHH
Q 010079 267 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK--DVQGLKELSNSEV 339 (518)
Q Consensus 267 ~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~--~v~el~~~~~~ev 339 (518)
+..+..+|+.|..++-.+-.+|-.+-..+..++.....---.--.-...+..+...+..+ +-..++.+...-+
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii 81 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLII 81 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhHhCCCCHHHHHHHHHHHH
Confidence 445556667777777777777777777777777654311111222333444555544432 4444444444333
No 98
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=31.60 E-value=2e+02 Score=23.10 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHhhHHHHHHHhhh
Q 010079 139 QYKSVMDDKRKEMEPLHQALGKL 161 (518)
Q Consensus 139 ~~r~~~~~K~~Eik~Lqe~L~kl 161 (518)
.+-..++.|+.+|..|++.|.++
T Consensus 46 ~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 46 TLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh
Confidence 34445777777777777777654
No 99
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=31.10 E-value=4.3e+02 Score=26.69 Aligned_cols=17 Identities=0% Similarity=-0.003 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHHHHh
Q 010079 175 SEEELDDLIRSLQYRIQ 191 (518)
Q Consensus 175 S~EEID~~I~~LE~rIq 191 (518)
..+.+..+|..|...|.
T Consensus 177 ~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 177 DVDADQKRLEEVLGSVN 193 (346)
T ss_dssp CHHHHHHHHHHHTGGGC
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45556666665555443
No 100
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=31.01 E-value=1.5e+02 Score=26.96 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=31.3
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 242 MGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKR 288 (518)
Q Consensus 242 ~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~r 288 (518)
+...+.+++..+++.++..+.+...+.++..++..|..++..+..+.
T Consensus 64 le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEek 110 (146)
T 2xnx_M 64 LEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEK 110 (146)
T ss_dssp HTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred hHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44567777778888887777777777766666666666655554433
No 101
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.69 E-value=2.2e+02 Score=23.25 Aligned_cols=9 Identities=44% Similarity=0.564 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 010079 272 EEIEALQQE 280 (518)
Q Consensus 272 ~ei~~LqeE 280 (518)
.-+..|+.+
T Consensus 46 ~mi~~l~~E 54 (78)
T 3iv1_A 46 EMVTRLDQE 54 (78)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 102
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.61 E-value=3.6e+02 Score=25.36 Aligned_cols=163 Identities=16% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 010079 128 AQLRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREI 207 (518)
Q Consensus 128 ~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEI 207 (518)
+.+.=.+.....|...+.....+++..++.=+.| ..+++..|..++. .+
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqesSrEL--------------E~ELE~eL~~~Ek-----------------~~ 58 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEGSREL--------------EAELEAQLVQAEQ-----------------RN 58 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH-----------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH-----------------HH
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 208 KQLEGTREKVMA-NAAMRAKIQESMGKKEDIQDQLMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAE 286 (518)
Q Consensus 208 kqLek~Rk~v~a-~~a~ra~iq~s~~~ke~iqeq~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~ 286 (518)
+.|+.....+.. +...+.++..+-.+-...+.. +..+|..++...+.+...|-.|+-..+.+......+..-+..+-.
T Consensus 59 ~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~-Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~ 137 (189)
T 2v71_A 59 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSV-LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQ 137 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010079 287 KRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAM 322 (518)
Q Consensus 287 ~rdeay~~i~~LRkerde~n~~f~~~r~~l~karel 322 (518)
+-+.+++.+--|-.+++++-.---...|....+++|
T Consensus 138 kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDL 173 (189)
T 2v71_A 138 RLNQAIERNAFLESELDEKESLLVSVQRLKDEARDL 173 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 103
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=29.29 E-value=2.3e+02 Score=23.09 Aligned_cols=39 Identities=31% Similarity=0.320 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 262 HLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRK 300 (518)
Q Consensus 262 el~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRk 300 (518)
.|..++..+..+...|+.|+.++..-+...-.++.+|-.
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555554443
No 104
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.23 E-value=1e+02 Score=23.17 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 010079 276 ALQQEVNDVAEKRDK 290 (518)
Q Consensus 276 ~LqeEldal~~~rde 290 (518)
.|+.|+..+..+.+.
T Consensus 23 aLk~E~~eLk~k~~~ 37 (53)
T 2yy0_A 23 LLRLELAEMKEKYEA 37 (53)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 105
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=28.83 E-value=3.3e+02 Score=29.10 Aligned_cols=19 Identities=0% Similarity=-0.212 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010079 201 KQILREIKQLEGTREKVMA 219 (518)
Q Consensus 201 KklLkEIkqLek~Rk~v~a 219 (518)
+.++.++.+|+..|+.++.
T Consensus 47 r~~~~~~~~l~~~rN~~sk 65 (484)
T 3lss_A 47 RRTQFLTEASKKLINICSK 65 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6788889999998887664
No 106
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.42 E-value=2.6e+02 Score=23.29 Aligned_cols=59 Identities=17% Similarity=0.329 Sum_probs=36.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
.+|..++.+-..+...|..|...-..++.+|..+..+...+..+=...+...+.++-+.
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql 69 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQ 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35666666666666667777766666667776666666666665555555444444333
No 107
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=28.21 E-value=2.4e+02 Score=22.97 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKEL 298 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~L 298 (518)
++..+..++..++..+.......+.+...+..|..+.+.+..+..++......|
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L 68 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEEL 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445445555555444444444444444444444444444444433333333333
No 108
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=27.62 E-value=2.4e+02 Score=22.63 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 267 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 267 ~kal~~ei~~LqeEldal~~~rdeay~~i~~LRker 302 (518)
+..+..+|+.+..++-.+-.+|-.+-..+..++...
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~ 40 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTEL 40 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 445556667777777777777888777877777654
No 109
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.39 E-value=2.5e+02 Score=22.74 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010079 249 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVND------VAEKRDKAFANIKELRKQRDEGNAYFF 310 (518)
Q Consensus 249 lKKeid~lr~kIKel~~k~kal~~ei~~LqeElda------l~~~rdeay~~i~~LRkerde~n~~f~ 310 (518)
.+++++.|-..|..|+.++ ..|+.++.. =..+...+...+..|..+++.++..|.
T Consensus 20 eqrEle~le~~Ie~LE~~i-------~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKL-------EALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655555555554 444444432 134556667777777777777776664
No 110
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.49 E-value=2.1e+02 Score=21.53 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 266 KVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 266 k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
.+..++..+..|......+.+--..+..+|..|+.+.+.+
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555566666666666666543
No 111
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=26.36 E-value=1.2e+02 Score=25.59 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=14.2
Q ss_pred HHHHHHhhHhhhHHHHHHHHhhHHHHHHHhhhh
Q 010079 130 LRSLKTEGRQYKSVMDDKRKEMEPLHQALGKLR 162 (518)
Q Consensus 130 LkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~klr 162 (518)
|..|.+-..+-+...+..+++-+.|.+.|..++
T Consensus 6 La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~ 38 (101)
T 1d7m_A 6 LAGLENSLESEKVSREQLIKQKDQLNSLLASLE 38 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444455554444
No 112
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=26.34 E-value=3.6e+02 Score=24.31 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=67.8
Q ss_pred ceEEeccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH--HhHHHHHHHHHHHHHHhhHhhhHHHH
Q 010079 77 NFYFIRHRQYDDPKIRAKIDLTDREIQRRNQARMQLMD---------ELRAK--RGVRGDLAAQLRSLKTEGRQYKSVMD 145 (518)
Q Consensus 77 ~fyfvR~p~pDD~~lKakI~~a~keI~klnq~R~~I~~---------alk~~--R~~R~eL~~qLkaLr~q~~~~r~~~~ 145 (518)
+.||-=.++|+-+.+-..+..++.--..-...|..|.. .++.+ +..-..+...++........|...+.
T Consensus 13 ~~~~~~~~p~~~~elik~L~~le~sassDa~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~ 92 (152)
T 4fla_A 13 NLYFQGAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLA 92 (152)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhccccchHHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46887667777777777788777755555555554432 11222 55567788888888888888988888
Q ss_pred HHHHhhHHHHHHHhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 010079 146 DKRKEMEPLHQALGKLRTTNNARSGGICSSEEELDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREK 216 (518)
Q Consensus 146 ~K~~Eik~Lqe~L~klre~~nAr~~~~~~S~EEID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~ 216 (518)
..+++.+.|...|.... ...+..+..-...|.+=|..+..++++++..+.
T Consensus 93 ~E~~dR~~L~~~L~~~~---------------------~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 93 AELEDRRQLARMLVEYT---------------------QNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877775332 222222222223345666667767666665543
No 113
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.06 E-value=3.2e+02 Score=23.55 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 269 ALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDE 304 (518)
Q Consensus 269 al~~ei~~LqeEldal~~~rdeay~~i~~LRkerde 304 (518)
+++.++...+.++.++..+.+.+-..+..|.++||=
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDF 43 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREF 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555666667776664
No 114
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.84 E-value=3.7e+02 Score=24.20 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=21.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 244 SDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQE 280 (518)
Q Consensus 244 ~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeE 280 (518)
.-|..|||++.+-+-+..+..+.+..++-+-..+.+.
T Consensus 119 ~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vker 155 (167)
T 4gkw_A 119 ETIGILRKELENEKLKAAENMDSFEKLSMENENLKEK 155 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 3456677777776666666666665554444444333
No 115
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.82 E-value=2.8e+02 Score=26.18 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhh
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEM 151 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Ei 151 (518)
..++.+++.++..|.+|...-..+...+..+..+-..|..+|.+++++...+.+......+.|
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i 71 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENS 71 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 456778888889999888888888888888888888899999999988887776665444444
No 116
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=25.56 E-value=3.8e+02 Score=24.25 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=11.5
Q ss_pred CCChHHHHHHHHHHH
Q 010079 86 YDDPKIRAKIDLTDR 100 (518)
Q Consensus 86 pDD~~lKakI~~a~k 100 (518)
+.-++|..+|..|+.
T Consensus 43 ~SleEIqkKLeAAEE 57 (143)
T 3ryc_E 43 PSLEEIQKKLEAAEE 57 (143)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 344889999998865
No 117
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.54 E-value=2.3e+02 Score=27.48 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010079 276 ALQQEVNDVAEKRDKAFANIKELRKQRDEGN 306 (518)
Q Consensus 276 ~LqeEldal~~~rdeay~~i~~LRkerde~n 306 (518)
.++.|.+...+........+-+||.++|...
T Consensus 189 ~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 189 RTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333333333333344444555666666544
No 118
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=25.31 E-value=2e+02 Score=23.18 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 247 DGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 299 (518)
Q Consensus 247 d~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LR 299 (518)
+.+-..+..|..++.-..+.+..++..+-.-+.+++.+..+...++.++.++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555666666666666666666666666666666666555555555444
No 119
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=24.88 E-value=72 Score=33.31 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKI 260 (518)
Q Consensus 246 Id~lKKeid~lr~kI 260 (518)
++.++.+++.+..+|
T Consensus 46 ~~~l~~~~n~~sk~i 60 (425)
T 2dq3_A 46 LEALRSERNKLSKEI 60 (425)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 120
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=24.80 E-value=2.7e+02 Score=22.41 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 249 VKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDK 290 (518)
Q Consensus 249 lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rde 290 (518)
||+++..--..|..|.+.+.--+.....|.+++-.++=+=+-
T Consensus 23 Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNl 64 (75)
T 3a7o_A 23 LQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNV 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHH
Confidence 333333333333333333333333333444444444333333
No 121
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.22 E-value=4.3e+02 Score=24.48 Aligned_cols=124 Identities=12% Similarity=0.186 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHH--------HHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHHh
Q 010079 89 PKIRAKIDLTDREIQRRNQ-ARMQLMDEL--------RAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQALG 159 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq-~R~~I~~al--------k~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L~ 159 (518)
+.+..-|+.++..|.++-. -|.-+.+.+ .+++..+.+|..-...|+....++..........+..|+....
T Consensus 8 ~~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 8 TNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777765542 222333333 2346666676666666766666666666666666766766554
Q ss_pred hhhhhhcccCCCCCCCHHH---------------------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 010079 160 KLRTTNNARSGGICSSEEE---------------------LDDLIRSLQYRIQHEIIPLSEEKQILREIKQLEGTREKVM 218 (518)
Q Consensus 160 klre~~nAr~~~~~~S~EE---------------------ID~~I~~LE~rIqhgSLsL~EEKklLkEIkqLek~Rk~v~ 218 (518)
++.+.-+.-+.+ -.++++ |++-|+-|..-+.+|.+++.. +|+.+..| .|++|.
T Consensus 88 k~~e~~~~~~~~-~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~---ylK~vR~L--aReQF~ 161 (174)
T 2p22_A 88 KVQQFSSTSHVD-DEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDT---FVKQGREL--ARQQFL 161 (174)
T ss_dssp HHHHHTTSSCCC-SSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHH---HHHHHHHH--HHHHHH
T ss_pred HHHHHHhcCCCC-CCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH---HHHHHHHH--HHHHHH
Confidence 443211111111 124454 888999999999999999975 55555554 344443
No 122
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.80 E-value=2.2e+02 Score=21.48 Aligned_cols=10 Identities=40% Similarity=0.627 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 010079 272 EEIEALQQEV 281 (518)
Q Consensus 272 ~ei~~LqeEl 281 (518)
.++..|..++
T Consensus 43 ~~i~~L~~e~ 52 (61)
T 1t2k_D 43 SEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 123
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.79 E-value=2.6e+02 Score=22.50 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 260 ISHLEGKVKALDEEIEALQQEVND 283 (518)
Q Consensus 260 IKel~~k~kal~~ei~~LqeElda 283 (518)
|.+++..+....+.|..|+.++|.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555443
No 124
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=23.39 E-value=2.5e+02 Score=23.18 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc--CHHHHHHHHHHHHHHHH
Q 010079 267 VKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKAMSVKK--DVQGLKELSNSEVEKYM 343 (518)
Q Consensus 267 ~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~karela~~~--~v~el~~~~~~eve~fm 343 (518)
+..+..+|+.|..++-.+-.+|-.+...+..++.. ..---.--.-...+..+..++..+ +-..++.+...-++-+.
T Consensus 10 L~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~K~~-~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~~s~ 87 (101)
T 3ret_A 10 LADIREAIDRIDLDIVQALGRRMDYVKAASRFEAS-EAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYI 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSS-GGGTTCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Confidence 34455555666667777777777777777777754 211111122233445555555443 44555555555444443
No 125
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=23.15 E-value=1.5e+02 Score=23.74 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=0.0
Q ss_pred hhhhhhhHHhh--hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 230 SMGKKEDIQDQ--LMGSDLDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELR 299 (518)
Q Consensus 230 s~~~ke~iqeq--~~~~eId~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LR 299 (518)
.+.|...++.+ ....+|+.|..=+-.+|+++-.-.+--+.+.++....+-...++...++.+.....+.|
T Consensus 1 lIkQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~~~~~~~~~ 72 (74)
T 2q6q_A 1 AVQQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDANSTFKEMR 72 (74)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccccchhhHhcc
No 126
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.06 E-value=6.2e+02 Score=25.87 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010079 274 IEALQQEVNDVAEKRDKAFANIKELRKQRDEGNA 307 (518)
Q Consensus 274 i~~LqeEldal~~~rdeay~~i~~LRkerde~n~ 307 (518)
.+..+.+.+.+.++.+.+...+.++-.+..+.+.
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 3333444444444444444444444444444443
No 127
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=22.84 E-value=3.1e+02 Score=23.13 Aligned_cols=35 Identities=11% Similarity=0.363 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 010079 268 KALDEEIEALQQEVN--------DVAEKRDKAFANIKELRKQR 302 (518)
Q Consensus 268 kal~~ei~~LqeEld--------al~~~rdeay~~i~~LRker 302 (518)
..+..+|+.+..++- .+-++|-.+-..+..++...
T Consensus 6 ~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~ 48 (104)
T 2gtv_X 6 AEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQL 48 (104)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHC
Confidence 334444455555555 55666666666666666554
No 128
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=22.78 E-value=2.9e+02 Score=26.42 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010079 295 IKELRKQRDEGNAYFFQYRALLNEAKAM 322 (518)
Q Consensus 295 i~~LRkerde~n~~f~~~r~~l~karel 322 (518)
+.+|++++-.+.++|.++|+...+=++-
T Consensus 75 ~~el~d~~lR~~AEfeN~RkR~~rE~e~ 102 (213)
T 4ani_A 75 LSEMEHRYLRLYADFENFRRRTRQEMEA 102 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666666665554443
No 129
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.73 E-value=2.5e+02 Score=29.16 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 252 ESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKR 288 (518)
Q Consensus 252 eid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~r 288 (518)
+.+.|...+.++.++...+..++..++.++..+.++.
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666665555443
No 130
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.51 E-value=2.6e+02 Score=21.38 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=30.3
Q ss_pred HHHHhHHHHHHHHHHHHHHhhHhhhHHHHHHHHhhHHHHHHH
Q 010079 117 RAKRGVRGDLAAQLRSLKTEGRQYKSVMDDKRKEMEPLHQAL 158 (518)
Q Consensus 117 k~~R~~R~eL~~qLkaLr~q~~~~r~~~~~K~~Eik~Lqe~L 158 (518)
..++.+-.++..+...|..++..++..+.....|+..|.+.|
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777788888887777777777777776666655
No 131
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.18 E-value=2.7e+02 Score=21.37 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 261 SHLEGKVKALDEEIEALQQEVNDVAEKRDK 290 (518)
Q Consensus 261 Kel~~k~kal~~ei~~LqeEldal~~~rde 290 (518)
+.|-+.+.++++++..|+.+...++.--++
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777776666554443
No 132
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=22.10 E-value=5.6e+02 Score=25.03 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQYRALLNEAKA 321 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~r~~l~kare 321 (518)
+..|++..+.+..++.-|.=+-.-+..+|..|..++..|...|+-++.+|-.|-..--.+-.++-.-...+.-+++
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556667776666665554344446678888888888888888888888888877665665555544444444444
No 133
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=21.92 E-value=1e+02 Score=25.60 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=29.8
Q ss_pred CCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 84 RQYDD-PKIRAKIDLTDREIQRRNQARMQLMDELRAKR 120 (518)
Q Consensus 84 p~pDD-~~lKakI~~a~keI~klnq~R~~I~~alk~~R 120 (518)
..+++ ..++.+||.++.+|-.|=..|..+...+...+
T Consensus 5 ~~~~~L~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~K 42 (101)
T 3ret_A 5 EDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFE 42 (101)
T ss_dssp GGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555 78999999999999999999998887765544
No 134
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.91 E-value=3.9e+02 Score=23.10 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEGNAYFFQY 312 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~n~~f~~~ 312 (518)
...|.-+++.++.++.... ......++.|+.++..+...++.+-..|..|-- .|++|-..
T Consensus 12 ~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq----~NDDLER~ 71 (111)
T 2v66_B 12 NQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ----ANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHH
Confidence 3445555555555443332 222346788899999988888888888777744 45555443
No 135
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.23 E-value=3.6e+02 Score=22.44 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 010079 245 DLDGVKKESQAVWAKISHLEGK----VKALDEEIEALQQEVNDVAEKR 288 (518)
Q Consensus 245 eId~lKKeid~lr~kIKel~~k----~kal~~ei~~LqeEldal~~~r 288 (518)
.|..+++....+...|.+++.. +..++..|..|..++..++...
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~ 60 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQM 60 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666655543 3333444444555554444443
No 136
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=21.16 E-value=4.9e+02 Score=24.04 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010079 246 LDGVKKESQAVWAKISHLEGKVKALDEEIEALQQEVNDVAEKRDKAFANIKELRKQRDEG 305 (518)
Q Consensus 246 Id~lKKeid~lr~kIKel~~k~kal~~ei~~LqeEldal~~~rdeay~~i~~LRkerde~ 305 (518)
+..|...++.-|.....-.+.+..+...+..|..+++.++.....+......|...+..+
T Consensus 71 ~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 71 YYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333333334444455555555555555555555554444444444433
No 137
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=21.06 E-value=5.3e+02 Score=24.32 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=11.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 010079 298 LRKQRDEGNAYFFQYRALLNEAKA 321 (518)
Q Consensus 298 LRkerde~n~~f~~~r~~l~kare 321 (518)
.....+...+.|.......+..+.
T Consensus 177 ~~~~~~~a~~~Y~~~v~~~n~~~~ 200 (301)
T 2efk_A 177 RSHMAEESKNEYAAQLQRFNRDQA 200 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555555555533
No 138
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.87 E-value=3.8e+02 Score=22.61 Aligned_cols=69 Identities=16% Similarity=0.309 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHhhhH-------HHHHHHHhhHHHHHHHhhh
Q 010079 89 PKIRAKIDLTDREIQRRNQARMQLMDELRAKRGVRGDLAAQLRSLKTEGRQYKS-------VMDDKRKEMEPLHQALGKL 161 (518)
Q Consensus 89 ~~lKakI~~a~keI~klnq~R~~I~~alk~~R~~R~eL~~qLkaLr~q~~~~r~-------~~~~K~~Eik~Lqe~L~kl 161 (518)
+.++..+..|++.+...... ++.++..-.+.....+++.-|+++..-|++ .++.-..+...|+..+..+
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~----id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQEL----IDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46777888888766554433 334443334444444556666666655544 4444444444555555433
No 139
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=20.58 E-value=81 Score=25.00 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 010079 292 FANIKELRKQRDEGNAYFFQYR 313 (518)
Q Consensus 292 y~~i~~LRkerde~n~~f~~~r 313 (518)
|.++..|+.+.|.+..+|-...
T Consensus 31 FAKWaKL~Rk~DKl~~ele~l~ 52 (65)
T 3sja_C 31 YAKWTKNNRKLDSLDKEINNLK 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444433
No 140
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.47 E-value=2.6e+02 Score=27.10 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=6.2
Q ss_pred HhHHHHHHHHHHHHHH
Q 010079 305 GNAYFFQYRALLNEAK 320 (518)
Q Consensus 305 ~n~~f~~~r~~l~kar 320 (518)
..+.+-+.|+.+..+|
T Consensus 197 ~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 197 MVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444443333
Done!