Query 010080
Match_columns 518
No_of_seqs 305 out of 2493
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 20:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 4E-105 8E-110 733.1 36.9 487 1-518 1-503 (526)
2 KOG0166 Karyopherin (importin) 100.0 6.6E-97 1E-101 732.0 44.5 478 4-516 2-491 (514)
3 PLN03200 cellulose synthase-in 100.0 3.2E-43 6.9E-48 396.4 39.5 404 85-515 192-642 (2102)
4 KOG0166 Karyopherin (importin) 100.0 2E-40 4.4E-45 329.5 33.6 363 127-510 68-435 (514)
5 PLN03200 cellulose synthase-in 100.0 1.8E-39 4E-44 366.1 40.7 409 87-514 409-863 (2102)
6 COG5064 SRP1 Karyopherin (impo 100.0 1E-39 2.2E-44 301.0 18.0 363 126-508 72-440 (526)
7 KOG4224 Armadillo repeat prote 100.0 4.3E-27 9.3E-32 219.5 26.0 350 90-468 93-447 (550)
8 KOG4224 Armadillo repeat prote 100.0 4.8E-26 1E-30 212.5 25.6 350 92-469 136-495 (550)
9 PF05804 KAP: Kinesin-associat 99.9 1.2E-22 2.6E-27 213.8 40.1 385 82-507 253-645 (708)
10 KOG0168 Putative ubiquitin fus 99.9 1.4E-19 3.1E-24 185.2 24.5 388 83-493 168-654 (1051)
11 PF05804 KAP: Kinesin-associat 99.8 1.1E-18 2.3E-23 184.2 30.2 346 90-469 298-651 (708)
12 KOG1048 Neural adherens juncti 99.8 8.9E-18 1.9E-22 173.2 25.9 406 81-513 232-686 (717)
13 KOG2122 Beta-catenin-binding p 99.8 1.3E-17 2.8E-22 178.4 24.3 366 82-469 197-603 (2195)
14 KOG4199 Uncharacterized conser 99.7 3.1E-14 6.6E-19 132.8 27.7 322 123-465 102-442 (461)
15 PF10508 Proteasom_PSMB: Prote 99.7 1.3E-13 2.9E-18 144.1 35.9 399 90-510 46-461 (503)
16 PF10508 Proteasom_PSMB: Prote 99.7 5.2E-13 1.1E-17 139.6 36.4 384 97-512 16-421 (503)
17 PRK09687 putative lyase; Provi 99.6 2.6E-14 5.6E-19 137.5 22.3 255 125-464 23-279 (280)
18 PRK09687 putative lyase; Provi 99.6 4.2E-14 9E-19 136.1 22.8 254 167-508 24-279 (280)
19 KOG4199 Uncharacterized conser 99.6 3.1E-13 6.7E-18 126.1 25.9 305 93-413 118-442 (461)
20 KOG4500 Rho/Rac GTPase guanine 99.6 5.2E-13 1.1E-17 128.4 20.6 353 95-468 55-432 (604)
21 KOG1048 Neural adherens juncti 99.5 2.1E-12 4.6E-17 133.8 23.0 306 167-491 234-615 (717)
22 KOG1222 Kinesin associated pro 99.5 2.5E-11 5.4E-16 118.4 27.5 350 119-502 298-654 (791)
23 KOG4500 Rho/Rac GTPase guanine 99.5 6.4E-12 1.4E-16 121.0 22.2 320 142-486 58-406 (604)
24 cd00020 ARM Armadillo/beta-cat 99.5 7.1E-13 1.5E-17 111.3 14.1 117 120-238 2-120 (120)
25 PF04826 Arm_2: Armadillo-like 99.5 3.2E-12 6.8E-17 120.4 19.8 227 251-502 10-253 (254)
26 KOG1293 Proteins containing ar 99.5 2.6E-11 5.6E-16 122.8 27.1 404 93-512 20-534 (678)
27 PF04826 Arm_2: Armadillo-like 99.5 3.9E-12 8.5E-17 119.8 20.1 196 121-327 8-207 (254)
28 PRK13800 putative oxidoreducta 99.5 1.8E-11 4E-16 137.0 27.8 275 82-463 621-895 (897)
29 cd00020 ARM Armadillo/beta-cat 99.4 3.1E-12 6.7E-17 107.4 12.6 113 166-281 7-119 (120)
30 KOG2122 Beta-catenin-binding p 99.4 3E-11 6.6E-16 130.6 22.1 316 93-417 249-603 (2195)
31 KOG2171 Karyopherin (importin) 99.4 8E-10 1.7E-14 118.9 30.1 392 92-505 47-498 (1075)
32 KOG2171 Karyopherin (importin) 99.4 1.6E-09 3.4E-14 116.7 31.9 359 87-471 123-508 (1075)
33 PRK13800 putative oxidoreducta 99.4 3.6E-10 7.9E-15 126.6 28.3 277 123-507 619-895 (897)
34 PF01749 IBB: Importin beta bi 99.3 3.5E-13 7.6E-18 107.2 2.4 94 3-105 2-97 (97)
35 PF01602 Adaptin_N: Adaptin N 99.3 2.3E-09 5E-14 114.3 31.1 327 82-467 7-333 (526)
36 KOG2023 Nuclear transport rece 99.3 2.5E-10 5.3E-15 115.5 18.3 309 125-467 128-505 (885)
37 PF01602 Adaptin_N: Adaptin N 99.3 2.1E-09 4.6E-14 114.5 26.7 368 90-507 122-520 (526)
38 KOG1293 Proteins containing ar 99.2 4.7E-09 1E-13 106.7 23.7 370 81-469 94-535 (678)
39 PTZ00429 beta-adaptin; Provisi 99.2 5.7E-08 1.2E-12 104.9 33.3 291 82-415 35-326 (746)
40 cd00256 VATPase_H VATPase_H, r 99.2 1.5E-08 3.2E-13 101.8 25.8 321 83-414 57-424 (429)
41 cd00256 VATPase_H VATPase_H, r 99.2 2.4E-08 5.2E-13 100.3 27.2 332 167-510 54-424 (429)
42 KOG2023 Nuclear transport rece 99.1 6.7E-09 1.4E-13 105.4 21.4 400 80-510 11-504 (885)
43 KOG1241 Karyopherin (importin) 99.1 1E-08 2.3E-13 105.6 21.9 358 89-471 266-672 (859)
44 KOG0168 Putative ubiquitin fus 99.0 1.4E-08 3E-13 105.7 19.2 257 126-397 168-437 (1051)
45 KOG1222 Kinesin associated pro 99.0 8.1E-07 1.8E-11 87.4 26.3 346 89-468 311-664 (791)
46 PF03224 V-ATPase_H_N: V-ATPas 98.9 3.1E-08 6.7E-13 97.8 17.0 232 254-506 56-309 (312)
47 PTZ00429 beta-adaptin; Provisi 98.9 4.3E-06 9.2E-11 90.6 32.3 357 90-504 148-539 (746)
48 KOG2759 Vacuolar H+-ATPase V1 98.8 5.9E-07 1.3E-11 87.4 19.9 222 144-374 175-439 (442)
49 KOG2160 Armadillo/beta-catenin 98.8 2.9E-07 6.3E-12 88.4 17.2 187 265-469 95-284 (342)
50 COG5215 KAP95 Karyopherin (imp 98.8 1.7E-06 3.8E-11 86.8 22.4 255 146-416 386-669 (858)
51 KOG1061 Vesicle coat complex A 98.8 2.7E-07 5.9E-12 96.1 16.9 329 96-472 27-420 (734)
52 KOG2759 Vacuolar H+-ATPase V1 98.8 4.3E-06 9.2E-11 81.6 23.9 312 95-414 79-437 (442)
53 PF03224 V-ATPase_H_N: V-ATPas 98.8 1.3E-07 2.8E-12 93.4 13.8 229 167-406 56-305 (312)
54 KOG2160 Armadillo/beta-catenin 98.7 1E-06 2.3E-11 84.6 18.5 185 92-281 93-281 (342)
55 KOG0946 ER-Golgi vesicle-tethe 98.7 4.7E-06 1E-10 86.7 23.8 288 166-469 22-348 (970)
56 KOG0213 Splicing factor 3b, su 98.7 9.5E-06 2.1E-10 83.9 25.7 376 92-508 726-1139(1172)
57 KOG1059 Vesicle coat complex A 98.7 7E-06 1.5E-10 84.7 23.6 147 167-329 257-405 (877)
58 KOG0946 ER-Golgi vesicle-tethe 98.6 3.6E-05 7.9E-10 80.3 27.8 284 124-417 21-348 (970)
59 KOG1241 Karyopherin (importin) 98.6 8.1E-06 1.8E-10 84.8 22.9 276 90-382 225-539 (859)
60 COG5215 KAP95 Karyopherin (imp 98.6 1.3E-05 2.9E-10 80.7 22.7 352 90-469 229-670 (858)
61 KOG1062 Vesicle coat complex A 98.5 7.4E-05 1.6E-09 78.4 26.6 318 98-467 29-379 (866)
62 PF00514 Arm: Armadillo/beta-c 98.5 1.9E-07 4.1E-12 61.8 5.1 41 375-415 1-41 (41)
63 KOG1517 Guanine nucleotide bin 98.5 1.6E-05 3.4E-10 85.2 20.4 283 94-390 448-749 (1387)
64 TIGR02270 conserved hypothetic 98.4 6.3E-05 1.4E-09 76.3 22.5 241 126-466 55-295 (410)
65 KOG2973 Uncharacterized conser 98.4 8.6E-05 1.9E-09 69.8 20.2 289 129-468 7-316 (353)
66 KOG3678 SARM protein (with ste 98.4 5.8E-05 1.2E-09 74.4 19.9 271 121-413 176-450 (832)
67 PF00514 Arm: Armadillo/beta-c 98.3 7.1E-07 1.5E-11 59.0 4.5 41 198-238 1-41 (41)
68 KOG1062 Vesicle coat complex A 98.3 0.0017 3.6E-08 68.6 30.9 250 143-417 124-416 (866)
69 COG5369 Uncharacterized conser 98.3 2.2E-06 4.8E-11 85.5 8.7 307 144-465 405-739 (743)
70 KOG3678 SARM protein (with ste 98.2 3.7E-05 8.1E-10 75.7 15.6 237 249-507 176-448 (832)
71 TIGR02270 conserved hypothetic 98.2 0.00019 4.1E-09 72.9 21.1 209 127-415 88-296 (410)
72 COG5181 HSH155 U2 snRNP splice 98.2 0.00012 2.7E-09 74.5 18.1 305 167-507 605-943 (975)
73 COG5369 Uncharacterized conser 98.2 8.2E-05 1.8E-09 74.7 16.1 302 186-508 406-738 (743)
74 PF13513 HEAT_EZ: HEAT-like re 98.2 4.4E-06 9.6E-11 59.3 5.4 55 358-413 1-55 (55)
75 COG5096 Vesicle coat complex, 98.1 0.0012 2.5E-08 70.8 25.4 168 91-282 28-195 (757)
76 COG1413 FOG: HEAT repeat [Ener 98.1 0.00051 1.1E-08 68.7 21.2 186 166-414 43-241 (335)
77 KOG1059 Vesicle coat complex A 98.1 0.00035 7.7E-09 72.5 19.8 218 167-416 145-366 (877)
78 KOG0213 Splicing factor 3b, su 98.1 0.0029 6.4E-08 66.1 26.2 380 87-508 641-1062(1172)
79 KOG1077 Vesicle coat complex A 98.1 0.0012 2.6E-08 68.6 22.4 296 172-512 117-438 (938)
80 KOG1242 Protein containing ada 98.0 0.004 8.8E-08 64.2 26.2 298 90-415 142-444 (569)
81 KOG1789 Endocytosis protein RM 98.0 0.005 1.1E-07 66.7 27.2 330 97-450 1740-2142(2235)
82 KOG4646 Uncharacterized conser 98.0 2.1E-05 4.5E-10 64.7 7.7 131 168-302 18-148 (173)
83 PF05536 Neurochondrin: Neuroc 98.0 0.00029 6.3E-09 74.4 18.5 238 168-415 7-261 (543)
84 PF05536 Neurochondrin: Neuroc 98.0 0.00042 9E-09 73.2 19.6 241 80-325 6-261 (543)
85 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0018 3.9E-08 65.0 21.3 237 252-512 24-270 (371)
86 COG1413 FOG: HEAT repeat [Ener 97.9 0.0053 1.2E-07 61.4 24.7 248 81-415 45-304 (335)
87 KOG1789 Endocytosis protein RM 97.9 0.0035 7.6E-08 67.8 23.7 327 146-491 1745-2139(2235)
88 PF13646 HEAT_2: HEAT repeats; 97.9 1.7E-05 3.7E-10 62.3 5.0 87 297-411 1-88 (88)
89 KOG2973 Uncharacterized conser 97.9 0.0035 7.5E-08 59.3 20.5 292 169-511 6-315 (353)
90 KOG0567 HEAT repeat-containing 97.9 0.0014 3E-08 60.6 17.2 255 82-414 6-279 (289)
91 KOG1060 Vesicle coat complex A 97.8 0.0035 7.5E-08 66.1 21.6 289 127-469 141-460 (968)
92 KOG0212 Uncharacterized conser 97.8 0.0026 5.6E-08 64.6 20.0 314 122-470 81-409 (675)
93 PF13646 HEAT_2: HEAT repeats; 97.8 6.5E-05 1.4E-09 58.9 7.2 87 127-234 1-88 (88)
94 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0033 7.2E-08 63.1 20.9 309 93-414 36-363 (371)
95 KOG1824 TATA-binding protein-i 97.8 0.015 3.2E-07 62.7 26.0 333 95-471 706-1099(1233)
96 KOG1824 TATA-binding protein-i 97.8 0.0024 5.2E-08 68.5 20.1 385 94-508 582-1033(1233)
97 KOG1058 Vesicle coat complex C 97.8 0.0039 8.4E-08 65.4 20.7 150 344-515 317-467 (948)
98 KOG0212 Uncharacterized conser 97.8 0.003 6.5E-08 64.2 19.4 270 126-416 168-445 (675)
99 PF13513 HEAT_EZ: HEAT-like re 97.8 4.9E-05 1.1E-09 53.8 5.1 53 141-194 2-55 (55)
100 smart00185 ARM Armadillo/beta- 97.8 7.3E-05 1.6E-09 49.1 5.4 38 377-414 3-40 (41)
101 KOG4413 26S proteasome regulat 97.8 0.0078 1.7E-07 57.3 20.5 322 84-412 130-481 (524)
102 KOG4646 Uncharacterized conser 97.7 0.00069 1.5E-08 56.0 11.7 113 124-239 15-129 (173)
103 KOG1517 Guanine nucleotide bin 97.7 0.00073 1.6E-08 73.0 14.9 238 168-416 474-733 (1387)
104 KOG1242 Protein containing ada 97.7 0.0059 1.3E-07 63.1 20.8 270 166-469 55-326 (569)
105 KOG1240 Protein kinase contain 97.7 0.001 2.2E-08 72.9 16.0 268 82-374 425-726 (1431)
106 PF12348 CLASP_N: CLASP N term 97.7 0.0009 2E-08 62.9 13.8 184 92-282 17-206 (228)
107 KOG4413 26S proteasome regulat 97.7 0.057 1.2E-06 51.6 25.8 351 90-467 90-477 (524)
108 smart00185 ARM Armadillo/beta- 97.7 0.0001 2.2E-09 48.5 4.8 39 200-238 3-41 (41)
109 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.0035 7.6E-08 59.4 16.3 227 180-414 162-427 (432)
110 PF12460 MMS19_C: RNAPII trans 97.6 0.011 2.4E-07 60.8 21.6 318 127-468 1-395 (415)
111 KOG1240 Protein kinase contain 97.6 0.0025 5.5E-08 70.0 16.5 298 126-470 423-728 (1431)
112 PF12348 CLASP_N: CLASP N term 97.6 0.00043 9.3E-09 65.1 9.7 183 306-510 17-205 (228)
113 KOG2259 Uncharacterized conser 97.5 0.0034 7.4E-08 64.9 16.1 190 212-416 237-440 (823)
114 KOG1060 Vesicle coat complex A 97.5 0.097 2.1E-06 55.7 26.4 287 82-415 38-350 (968)
115 COG5231 VMA13 Vacuolar H+-ATPa 97.5 0.015 3.3E-07 55.3 18.7 219 145-373 168-428 (432)
116 KOG0567 HEAT repeat-containing 97.5 0.018 3.8E-07 53.5 18.2 256 127-465 5-278 (289)
117 PF10165 Ric8: Guanine nucleot 97.5 0.018 3.8E-07 59.7 20.7 265 103-376 2-340 (446)
118 PF10165 Ric8: Guanine nucleot 97.4 0.035 7.6E-07 57.5 22.5 234 178-415 43-337 (446)
119 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.00095 2.1E-08 53.1 8.5 95 360-467 2-96 (97)
120 PF08569 Mo25: Mo25-like; Int 97.4 0.016 3.6E-07 57.1 18.7 209 202-417 69-285 (335)
121 KOG1061 Vesicle coat complex A 97.4 0.0093 2E-07 63.1 17.5 299 124-470 12-311 (734)
122 PF09759 Atx10homo_assoc: Spin 97.3 0.00067 1.4E-08 54.0 6.6 58 183-240 2-61 (102)
123 COG5181 HSH155 U2 snRNP splice 97.2 0.006 1.3E-07 62.6 13.0 221 211-468 606-830 (975)
124 KOG1943 Beta-tubulin folding c 97.2 0.081 1.8E-06 58.2 22.1 326 77-415 335-705 (1133)
125 KOG2259 Uncharacterized conser 97.1 0.015 3.2E-07 60.4 15.4 220 214-468 203-440 (823)
126 KOG1077 Vesicle coat complex A 97.1 0.053 1.1E-06 56.9 19.1 276 140-456 125-422 (938)
127 KOG1991 Nuclear transport rece 97.1 0.083 1.8E-06 57.6 20.7 281 124-416 409-712 (1010)
128 COG5096 Vesicle coat complex, 97.0 0.077 1.7E-06 57.3 20.1 167 218-415 28-195 (757)
129 KOG2734 Uncharacterized conser 97.0 0.084 1.8E-06 52.5 18.5 243 250-511 122-400 (536)
130 KOG0211 Protein phosphatase 2A 96.9 0.15 3.3E-06 55.5 20.8 260 137-416 248-509 (759)
131 PF12460 MMS19_C: RNAPII trans 96.9 0.72 1.6E-05 47.5 26.9 298 95-416 56-395 (415)
132 KOG0915 Uncharacterized conser 96.8 0.46 1E-05 54.4 24.3 316 127-469 958-1308(1702)
133 COG5240 SEC21 Vesicle coat com 96.8 0.06 1.3E-06 55.2 16.1 129 140-281 278-406 (898)
134 PF05004 IFRD: Interferon-rela 96.7 0.087 1.9E-06 51.7 16.6 194 82-282 43-257 (309)
135 PF11864 DUF3384: Domain of un 96.7 0.96 2.1E-05 47.3 28.7 288 96-414 4-329 (464)
136 PF13764 E3_UbLigase_R4: E3 ub 96.6 0.22 4.7E-06 54.8 20.1 247 251-511 115-406 (802)
137 KOG2274 Predicted importin 9 [ 96.6 0.49 1.1E-05 51.4 21.8 223 264-512 461-690 (1005)
138 PF09759 Atx10homo_assoc: Spin 96.6 0.013 2.9E-07 46.7 8.0 65 144-208 4-71 (102)
139 COG5240 SEC21 Vesicle coat com 96.6 1.2 2.6E-05 46.2 26.8 291 163-508 261-552 (898)
140 KOG4535 HEAT and armadillo rep 96.5 0.044 9.5E-07 55.0 12.7 158 167-326 434-604 (728)
141 KOG0211 Protein phosphatase 2A 96.5 0.27 5.9E-06 53.7 19.8 269 167-469 356-627 (759)
142 KOG2062 26S proteasome regulat 96.5 0.1 2.3E-06 55.1 15.7 175 253-469 519-697 (929)
143 KOG2274 Predicted importin 9 [ 96.4 0.64 1.4E-05 50.5 21.4 308 94-415 462-780 (1005)
144 PF12755 Vac14_Fab1_bd: Vacuol 96.4 0.0088 1.9E-07 47.6 5.7 90 315-413 5-94 (97)
145 KOG1991 Nuclear transport rece 96.4 2.2 4.8E-05 47.1 29.9 116 101-219 440-557 (1010)
146 PF12717 Cnd1: non-SMC mitotic 96.3 0.067 1.4E-06 48.1 11.9 92 180-283 1-93 (178)
147 KOG1078 Vesicle coat complex C 96.3 0.2 4.3E-06 53.4 16.4 65 345-414 467-531 (865)
148 KOG1943 Beta-tubulin folding c 96.2 0.41 8.9E-06 52.9 18.8 248 166-456 341-600 (1133)
149 PF11698 V-ATPase_H_C: V-ATPas 96.2 0.015 3.2E-07 47.7 6.1 69 439-509 44-113 (119)
150 KOG4535 HEAT and armadillo rep 96.2 0.11 2.3E-06 52.3 13.0 185 180-373 404-603 (728)
151 KOG0915 Uncharacterized conser 96.1 1.3 2.9E-05 50.9 22.6 350 84-468 1041-1428(1702)
152 KOG2734 Uncharacterized conser 96.1 1 2.2E-05 45.2 19.1 224 81-308 124-374 (536)
153 PF12717 Cnd1: non-SMC mitotic 96.0 0.1 2.3E-06 46.8 11.8 92 357-468 1-93 (178)
154 KOG1248 Uncharacterized conser 96.0 3.5 7.7E-05 46.5 25.0 200 300-509 658-896 (1176)
155 PF11841 DUF3361: Domain of un 96.0 0.16 3.5E-06 44.0 11.9 123 118-240 4-133 (160)
156 PF11698 V-ATPase_H_C: V-ATPas 95.9 0.021 4.5E-07 46.9 5.9 71 344-414 43-114 (119)
157 KOG4151 Myosin assembly protei 95.8 0.097 2.1E-06 55.9 11.8 201 94-302 516-719 (748)
158 PF14668 RICTOR_V: Rapamycin-i 95.7 0.048 1E-06 40.6 6.6 64 144-209 5-70 (73)
159 KOG1967 DNA repair/transcripti 95.6 0.12 2.7E-06 55.9 11.5 187 168-370 817-1021(1030)
160 PF05918 API5: Apoptosis inhib 95.5 0.74 1.6E-05 48.4 16.8 123 180-322 35-159 (556)
161 PF02985 HEAT: HEAT repeat; I 95.5 0.022 4.7E-07 34.8 3.5 29 345-373 1-29 (31)
162 PF02985 HEAT: HEAT repeat; I 95.5 0.018 4E-07 35.1 3.1 29 387-415 1-29 (31)
163 KOG1967 DNA repair/transcripti 95.4 0.082 1.8E-06 57.2 9.6 148 252-410 866-1019(1030)
164 PF11841 DUF3361: Domain of un 95.4 0.54 1.2E-05 40.8 12.9 123 288-417 4-133 (160)
165 PF07814 WAPL: Wings apart-lik 95.2 0.73 1.6E-05 46.4 15.5 243 168-417 23-357 (361)
166 KOG2611 Neurochondrin/leucine- 95.2 1.9 4.2E-05 43.7 17.7 226 93-324 22-273 (698)
167 KOG2956 CLIP-associating prote 95.2 0.78 1.7E-05 46.3 15.0 186 82-282 286-477 (516)
168 KOG4653 Uncharacterized conser 95.2 0.82 1.8E-05 49.5 15.9 179 219-416 737-919 (982)
169 KOG1248 Uncharacterized conser 95.2 3.4 7.4E-05 46.6 21.0 240 131-384 659-910 (1176)
170 KOG1058 Vesicle coat complex C 95.1 0.68 1.5E-05 49.4 14.8 245 90-376 214-466 (948)
171 PF06371 Drf_GBD: Diaphanous G 95.1 0.17 3.7E-06 45.7 9.6 93 101-195 83-186 (187)
172 PF14668 RICTOR_V: Rapamycin-i 95.0 0.17 3.6E-06 37.8 7.6 55 361-416 4-59 (73)
173 KOG4151 Myosin assembly protei 94.9 0.32 6.9E-06 52.2 12.1 219 183-415 477-699 (748)
174 PF08045 CDC14: Cell division 94.9 0.43 9.2E-06 45.0 11.8 82 432-515 127-211 (257)
175 PF14500 MMS19_N: Dos2-interac 94.8 2.2 4.9E-05 40.7 16.6 219 171-416 4-238 (262)
176 PF08569 Mo25: Mo25-like; Int 94.7 4.3 9.3E-05 40.3 18.7 205 119-328 70-286 (335)
177 KOG0414 Chromosome condensatio 94.6 0.3 6.5E-06 54.4 11.3 161 124-305 918-1081(1251)
178 PF05918 API5: Apoptosis inhib 94.6 0.83 1.8E-05 48.0 14.0 128 308-469 34-164 (556)
179 KOG2611 Neurochondrin/leucine- 94.6 2.6 5.7E-05 42.8 16.6 194 171-374 16-226 (698)
180 COG5116 RPN2 26S proteasome re 94.5 0.48 1E-05 48.8 11.6 148 216-396 523-672 (926)
181 PF05004 IFRD: Interferon-rela 94.5 1.7 3.6E-05 42.8 15.4 187 215-414 49-256 (309)
182 KOG2062 26S proteasome regulat 94.5 0.54 1.2E-05 50.0 12.2 163 214-409 524-690 (929)
183 KOG1820 Microtubule-associated 94.4 0.91 2E-05 50.1 14.6 181 90-282 261-443 (815)
184 PF11701 UNC45-central: Myosin 94.4 0.21 4.7E-06 43.7 8.0 145 297-463 5-155 (157)
185 KOG0414 Chromosome condensatio 94.4 0.88 1.9E-05 50.9 14.1 143 253-416 919-1065(1251)
186 KOG1243 Protein kinase [Genera 94.2 1.3 2.8E-05 47.1 14.3 258 83-371 255-513 (690)
187 KOG1949 Uncharacterized conser 94.0 4.1 8.9E-05 43.4 17.3 223 213-451 178-405 (1005)
188 COG5656 SXM1 Importin, protein 94.0 3.9 8.4E-05 43.9 17.1 282 124-416 407-712 (970)
189 PF12719 Cnd3: Nuclear condens 93.9 0.54 1.2E-05 46.1 10.7 112 344-469 26-145 (298)
190 KOG3665 ZYG-1-like serine/thre 93.8 1.3 2.8E-05 48.5 14.2 196 190-413 494-695 (699)
191 KOG3665 ZYG-1-like serine/thre 93.8 2.7 5.8E-05 46.1 16.6 199 276-510 494-696 (699)
192 KOG1078 Vesicle coat complex C 93.7 12 0.00026 40.6 25.8 304 146-508 224-529 (865)
193 PF08045 CDC14: Cell division 93.7 4.6 0.0001 38.2 15.8 94 144-237 109-206 (257)
194 PF06025 DUF913: Domain of Unk 93.6 6.8 0.00015 39.7 18.0 121 315-451 79-209 (379)
195 smart00638 LPD_N Lipoprotein N 93.5 1.9 4.1E-05 46.6 15.1 136 253-413 393-543 (574)
196 PF06025 DUF913: Domain of Unk 93.5 7.2 0.00016 39.5 18.1 154 224-384 75-243 (379)
197 KOG2025 Chromosome condensatio 93.4 12 0.00027 40.1 19.6 108 207-322 83-190 (892)
198 PRK14707 hypothetical protein; 93.3 25 0.00053 42.8 27.4 341 96-460 178-522 (2710)
199 KOG3036 Protein involved in ce 93.3 2.7 5.9E-05 39.0 13.1 114 92-207 135-257 (293)
200 PF01347 Vitellogenin_N: Lipop 93.3 0.53 1.2E-05 51.3 10.5 170 211-413 397-587 (618)
201 KOG3036 Protein involved in ce 93.2 4.4 9.6E-05 37.7 14.2 143 94-239 91-248 (293)
202 PF13764 E3_UbLigase_R4: E3 ub 93.0 6.4 0.00014 43.6 17.9 210 167-397 85-330 (802)
203 COG5656 SXM1 Importin, protein 92.9 16 0.00034 39.5 23.1 301 145-471 389-715 (970)
204 KOG2956 CLIP-associating prote 92.9 2.9 6.4E-05 42.4 13.8 167 143-324 304-476 (516)
205 PF04078 Rcd1: Cell differenti 92.6 3.3 7E-05 39.1 13.0 142 183-327 66-220 (262)
206 PRK14707 hypothetical protein; 92.6 31 0.00068 42.0 28.8 384 93-503 133-521 (2710)
207 COG5116 RPN2 26S proteasome re 92.4 0.67 1.5E-05 47.8 8.7 126 125-267 551-676 (926)
208 PF11701 UNC45-central: Myosin 92.1 0.55 1.2E-05 41.1 6.9 147 168-321 5-155 (157)
209 PF04078 Rcd1: Cell differenti 91.9 3 6.4E-05 39.3 11.8 137 272-417 69-220 (262)
210 KOG1566 Conserved protein Mo25 91.8 12 0.00027 36.1 15.7 209 203-417 73-288 (342)
211 PF13251 DUF4042: Domain of un 91.6 1.6 3.4E-05 39.1 9.4 145 225-374 2-175 (182)
212 PF04063 DUF383: Domain of unk 91.6 0.86 1.9E-05 41.2 7.8 125 266-397 8-158 (192)
213 KOG4653 Uncharacterized conser 91.5 3 6.6E-05 45.4 12.7 215 179-413 739-962 (982)
214 PF04063 DUF383: Domain of unk 91.5 1.5 3.3E-05 39.6 9.3 72 344-416 52-133 (192)
215 PF11865 DUF3385: Domain of un 91.4 3.1 6.8E-05 36.5 10.9 146 125-281 10-156 (160)
216 PF12719 Cnd3: Nuclear condens 91.1 2.8 6E-05 41.1 11.6 170 210-398 27-209 (298)
217 KOG2032 Uncharacterized conser 91.0 21 0.00045 36.7 17.4 96 179-282 270-371 (533)
218 PF01347 Vitellogenin_N: Lipop 90.9 0.51 1.1E-05 51.4 6.9 178 119-322 386-586 (618)
219 smart00638 LPD_N Lipoprotein N 90.5 1.7 3.8E-05 46.8 10.4 132 168-321 395-541 (574)
220 COG5098 Chromosome condensatio 90.4 1.3 2.9E-05 46.8 8.6 145 124-283 891-1038(1128)
221 COG5098 Chromosome condensatio 90.2 1.9 4.2E-05 45.7 9.6 142 254-416 893-1038(1128)
222 KOG1020 Sister chromatid cohes 89.7 5.2 0.00011 46.4 13.1 129 270-416 794-922 (1692)
223 KOG2032 Uncharacterized conser 89.4 17 0.00037 37.3 15.3 136 89-229 265-407 (533)
224 PF10363 DUF2435: Protein of u 89.2 3 6.5E-05 32.8 8.0 84 83-176 4-87 (92)
225 KOG1243 Protein kinase [Genera 89.0 2.7 5.8E-05 44.8 9.7 187 206-413 327-513 (690)
226 PF11707 Npa1: Ribosome 60S bi 88.8 26 0.00057 34.8 20.7 158 345-512 57-238 (330)
227 KOG2999 Regulator of Rac1, req 88.7 23 0.0005 37.0 15.6 153 256-416 86-243 (713)
228 PF11707 Npa1: Ribosome 60S bi 88.4 11 0.00024 37.5 13.5 158 168-327 58-239 (330)
229 PF01603 B56: Protein phosphat 88.1 8.9 0.00019 39.4 12.9 257 104-380 112-377 (409)
230 KOG2137 Protein kinase [Signal 87.9 2.8 6.2E-05 44.8 9.1 134 252-399 388-521 (700)
231 PF06371 Drf_GBD: Diaphanous G 87.4 8.6 0.00019 34.5 11.2 82 374-466 95-186 (187)
232 KOG1020 Sister chromatid cohes 86.9 5.9 0.00013 46.0 11.2 165 226-416 794-961 (1692)
233 PF10363 DUF2435: Protein of u 86.1 4.1 8.9E-05 32.0 7.1 81 212-304 6-86 (92)
234 KOG1822 Uncharacterized conser 86.0 75 0.0016 38.5 19.4 283 167-468 877-1190(2067)
235 PF08167 RIX1: rRNA processing 85.4 7.9 0.00017 34.1 9.5 117 344-471 25-147 (165)
236 PF11229 DUF3028: Protein of u 85.4 49 0.0011 34.4 15.8 194 252-467 96-306 (589)
237 PF12231 Rif1_N: Rap1-interact 84.9 47 0.001 33.6 21.5 267 223-507 7-299 (372)
238 KOG2137 Protein kinase [Signal 84.7 20 0.00043 38.6 13.3 204 222-467 286-496 (700)
239 KOG1949 Uncharacterized conser 84.7 14 0.0003 39.6 12.0 192 299-516 178-376 (1005)
240 COG5218 YCG1 Chromosome conden 83.5 43 0.00093 35.4 14.6 109 156-273 81-190 (885)
241 KOG2999 Regulator of Rac1, req 83.0 42 0.00091 35.1 14.3 144 91-239 92-243 (713)
242 KOG2025 Chromosome condensatio 82.8 28 0.00061 37.5 13.3 104 166-278 85-189 (892)
243 cd03572 ENTH_epsin_related ENT 82.6 3 6.6E-05 34.6 5.2 75 439-513 39-121 (122)
244 KOG1525 Sister chromatid cohes 82.6 1.1E+02 0.0024 36.1 19.6 148 294-467 258-405 (1266)
245 KOG1820 Microtubule-associated 82.4 13 0.00028 41.3 11.4 189 258-470 258-446 (815)
246 PLN03076 ARF guanine nucleotid 81.3 91 0.002 38.3 18.4 206 179-396 1149-1403(1780)
247 KOG1832 HIV-1 Vpr-binding prot 81.2 4.3 9.2E-05 44.4 6.9 180 184-384 569-783 (1516)
248 PF12830 Nipped-B_C: Sister ch 81.0 19 0.00042 32.4 10.4 72 210-288 9-80 (187)
249 PF10274 ParcG: Parkin co-regu 80.9 40 0.00086 30.2 11.9 72 344-416 38-110 (183)
250 KOG2933 Uncharacterized conser 79.9 4.8 0.0001 38.8 6.1 142 254-415 89-234 (334)
251 cd03568 VHS_STAM VHS domain fa 79.7 7.8 0.00017 33.3 7.0 70 439-509 38-108 (144)
252 PF08506 Cse1: Cse1; InterPro 79.2 29 0.00063 35.1 11.9 129 142-277 227-370 (370)
253 cd03569 VHS_Hrs_Vps27p VHS dom 78.4 9.2 0.0002 32.8 7.0 70 439-509 42-112 (142)
254 KOG2933 Uncharacterized conser 78.1 6.1 0.00013 38.0 6.2 138 215-373 94-234 (334)
255 cd03561 VHS VHS domain family; 77.8 12 0.00026 31.7 7.5 70 439-509 38-110 (133)
256 COG5209 RCD1 Uncharacterized p 77.5 12 0.00026 34.4 7.5 139 183-324 116-267 (315)
257 PF11864 DUF3384: Domain of un 77.2 99 0.0021 32.4 28.7 96 268-373 230-330 (464)
258 PF12031 DUF3518: Domain of un 77.1 5.2 0.00011 37.2 5.3 80 142-222 140-229 (257)
259 PF14225 MOR2-PAG1_C: Cell mor 77.1 70 0.0015 30.6 18.6 217 82-327 10-256 (262)
260 PF12031 DUF3518: Domain of un 76.7 14 0.00031 34.4 8.0 89 312-401 140-231 (257)
261 PF07814 WAPL: Wings apart-lik 76.1 92 0.002 31.4 17.2 203 212-417 24-301 (361)
262 PF08324 PUL: PUL domain; Int 76.0 29 0.00062 33.2 10.6 152 143-299 80-248 (268)
263 PF10521 DUF2454: Protein of u 75.2 23 0.0005 34.3 9.7 123 344-468 119-254 (282)
264 PF08167 RIX1: rRNA processing 74.5 28 0.0006 30.7 9.3 109 79-196 25-143 (165)
265 PF04821 TIMELESS: Timeless pr 74.3 76 0.0016 30.4 12.9 71 399-469 133-210 (266)
266 PF11538 Snurportin1: Snurport 74.1 4 8.7E-05 26.3 2.7 38 9-46 2-39 (40)
267 PF12530 DUF3730: Protein of u 73.8 79 0.0017 29.6 16.9 139 127-282 2-151 (234)
268 cd03567 VHS_GGA VHS domain fam 73.1 16 0.00035 31.1 7.1 70 439-509 39-114 (139)
269 KOG1992 Nuclear export recepto 72.4 1.6E+02 0.0035 32.6 17.4 291 143-449 379-706 (960)
270 PF06685 DUF1186: Protein of u 72.2 61 0.0013 30.7 11.3 162 252-444 30-203 (249)
271 cd03561 VHS VHS domain family; 70.6 62 0.0013 27.2 10.1 72 344-415 37-112 (133)
272 PF12074 DUF3554: Domain of un 70.4 57 0.0012 32.5 11.5 212 167-397 23-255 (339)
273 PF13251 DUF4042: Domain of un 70.2 56 0.0012 29.3 10.1 111 169-282 42-174 (182)
274 COG5218 YCG1 Chromosome conden 69.8 1.6E+02 0.0034 31.4 16.2 105 251-368 89-194 (885)
275 PF01603 B56: Protein phosphat 69.6 98 0.0021 31.8 13.2 226 84-327 135-372 (409)
276 KOG2038 CAATT-binding transcri 69.2 19 0.00042 39.0 7.9 66 345-415 305-370 (988)
277 cd00197 VHS_ENTH_ANTH VHS, ENT 69.1 21 0.00046 29.1 6.8 71 439-510 38-114 (115)
278 KOG2549 Transcription initiati 68.3 1.2E+02 0.0025 32.0 13.0 149 73-236 201-368 (576)
279 cd03569 VHS_Hrs_Vps27p VHS dom 68.3 76 0.0017 27.1 11.8 73 343-415 40-114 (142)
280 PF12830 Nipped-B_C: Sister ch 68.1 20 0.00043 32.4 7.0 67 439-512 9-75 (187)
281 KOG1993 Nuclear transport rece 67.6 2E+02 0.0044 31.8 21.6 317 119-466 482-811 (978)
282 PF04388 Hamartin: Hamartin pr 66.4 79 0.0017 34.8 12.3 136 254-416 5-141 (668)
283 smart00288 VHS Domain present 66.2 21 0.00045 30.2 6.3 70 439-509 38-109 (133)
284 cd03567 VHS_GGA VHS domain fam 65.8 85 0.0018 26.8 11.8 93 344-440 38-137 (139)
285 PF12530 DUF3730: Protein of u 65.6 1.2E+02 0.0026 28.4 17.2 190 92-304 11-212 (234)
286 cd03568 VHS_STAM VHS domain fa 65.5 77 0.0017 27.2 9.7 74 387-469 38-112 (144)
287 PF04388 Hamartin: Hamartin pr 65.4 1.6E+02 0.0034 32.5 14.3 132 82-237 7-139 (668)
288 cd08050 TAF6 TATA Binding Prot 65.4 46 0.001 33.2 9.6 108 75-196 174-297 (343)
289 PF03378 CAS_CSE1: CAS/CSE pro 64.6 1.7E+02 0.0037 30.3 13.8 117 77-195 24-145 (435)
290 smart00567 EZ_HEAT E-Z type HE 63.8 8.3 0.00018 22.8 2.5 13 359-371 2-14 (30)
291 PF10521 DUF2454: Protein of u 63.2 21 0.00047 34.5 6.6 71 210-281 120-202 (282)
292 PF14500 MMS19_N: Dos2-interac 62.8 1.5E+02 0.0032 28.4 12.5 59 91-154 8-68 (262)
293 PF01417 ENTH: ENTH domain; I 62.6 6.8 0.00015 32.7 2.7 70 439-512 40-122 (125)
294 PF08711 Med26: TFIIS helical 62.1 19 0.00041 24.8 4.4 36 474-509 12-48 (53)
295 PF14726 RTTN_N: Rotatin, an a 61.9 24 0.00052 28.1 5.4 70 436-508 28-97 (98)
296 KOG2005 26S proteasome regulat 61.7 1.6E+02 0.0035 31.8 12.7 65 345-416 641-705 (878)
297 KOG1822 Uncharacterized conser 61.7 3.9E+02 0.0084 33.0 18.9 307 182-506 799-1141(2067)
298 PF12231 Rif1_N: Rap1-interact 60.3 2E+02 0.0043 29.1 21.4 302 93-414 4-351 (372)
299 PF04499 SAPS: SIT4 phosphatas 59.7 53 0.0011 34.4 9.1 89 377-468 53-149 (475)
300 PF12726 SEN1_N: SEN1 N termin 59.2 1.2E+02 0.0027 33.7 12.6 84 146-240 501-587 (727)
301 smart00509 TFS2N Domain in the 59.0 50 0.0011 24.7 6.6 50 457-509 20-69 (75)
302 PLN03076 ARF guanine nucleotid 58.7 1.9E+02 0.0041 35.7 14.3 267 93-374 1148-1490(1780)
303 smart00288 VHS Domain present 58.1 47 0.001 28.0 7.1 71 84-154 39-110 (133)
304 COG5209 RCD1 Uncharacterized p 57.5 63 0.0014 29.8 7.9 106 95-203 159-274 (315)
305 PF06012 DUF908: Domain of Unk 57.4 18 0.00039 35.9 5.1 83 269-352 238-324 (329)
306 PF14225 MOR2-PAG1_C: Cell mor 57.4 1.8E+02 0.0039 27.8 17.3 165 309-508 75-251 (262)
307 PF12783 Sec7_N: Guanine nucle 57.2 96 0.0021 27.2 9.3 91 117-208 65-158 (168)
308 KOG1832 HIV-1 Vpr-binding prot 57.1 1E+02 0.0023 34.4 10.6 165 116-293 592-783 (1516)
309 PF00790 VHS: VHS domain; Int 56.9 31 0.00066 29.4 5.8 70 439-509 43-116 (140)
310 cd00183 TFIIS_I N-terminal dom 55.9 58 0.0013 24.4 6.5 36 474-509 36-71 (76)
311 PF06743 FAST_1: FAST kinase-l 55.5 43 0.00092 24.7 5.6 67 228-298 3-69 (71)
312 PF13001 Ecm29: Proteasome sta 55.2 1.2E+02 0.0025 32.2 10.9 159 345-515 320-492 (501)
313 cd03572 ENTH_epsin_related ENT 53.9 1.2E+02 0.0025 25.3 8.4 85 368-466 25-118 (122)
314 KOG0891 DNA-dependent protein 51.6 4.1E+02 0.009 33.9 15.7 188 179-375 577-765 (2341)
315 PF08324 PUL: PUL domain; Int 51.4 1E+02 0.0022 29.3 9.2 138 356-505 122-268 (268)
316 PF11865 DUF3385: Domain of un 51.1 42 0.00092 29.4 5.8 77 118-195 79-156 (160)
317 KOG1525 Sister chromatid cohes 50.8 5E+02 0.011 30.9 19.3 70 386-468 259-330 (1266)
318 KOG1848 Uncharacterized conser 49.9 2.9E+02 0.0063 32.8 13.0 96 221-323 854-956 (1610)
319 PF10274 ParcG: Parkin co-regu 49.9 1.6E+02 0.0034 26.5 9.1 74 124-199 37-112 (183)
320 PF04821 TIMELESS: Timeless pr 49.5 2.4E+02 0.0053 26.9 15.0 99 121-240 41-151 (266)
321 KOG4464 Signaling protein RIC- 49.3 1.8E+02 0.0039 29.6 10.1 105 398-513 109-230 (532)
322 PF12243 CTK3: CTD kinase subu 49.2 1.3E+02 0.0027 25.7 8.1 59 348-416 12-70 (139)
323 KOG1988 Uncharacterized conser 47.4 4E+02 0.0087 29.9 13.1 243 90-373 32-281 (970)
324 PF04869 Uso1_p115_head: Uso1 47.3 2.9E+02 0.0063 27.2 13.6 28 180-207 51-78 (312)
325 KOG1993 Nuclear transport rece 46.8 4.6E+02 0.0099 29.3 19.9 311 79-415 526-864 (978)
326 PF09324 DUF1981: Domain of un 46.4 28 0.00061 26.9 3.5 71 292-369 14-84 (86)
327 KOG1848 Uncharacterized conser 46.3 5.9E+02 0.013 30.4 15.0 128 144-278 814-957 (1610)
328 KOG1566 Conserved protein Mo25 46.1 3E+02 0.0065 27.0 15.0 199 289-507 73-282 (342)
329 PF00790 VHS: VHS domain; Int 45.2 1.9E+02 0.0041 24.5 9.3 72 344-415 42-118 (140)
330 PF08216 CTNNBL: Catenin-beta- 44.5 28 0.0006 28.2 3.2 41 185-226 64-104 (108)
331 PF12463 DUF3689: Protein of u 43.8 3.2E+02 0.007 26.7 14.6 126 203-328 3-176 (303)
332 PF03378 CAS_CSE1: CAS/CSE pro 43.8 3.9E+02 0.0085 27.7 15.9 65 174-238 79-146 (435)
333 PF08506 Cse1: Cse1; InterPro 43.6 3.6E+02 0.0079 27.3 18.0 127 310-461 225-369 (370)
334 PF14663 RasGEF_N_2: Rapamycin 43.0 1.9E+02 0.004 23.7 8.6 102 387-512 9-111 (115)
335 KOG0413 Uncharacterized conser 42.7 1E+02 0.0022 34.8 8.0 126 269-415 947-1073(1529)
336 cd01882 BMS1 Bms1. Bms1 is an 42.7 8.4 0.00018 35.9 0.1 25 23-47 9-33 (225)
337 cd03565 VHS_Tom1 VHS domain fa 42.3 1.1E+02 0.0025 26.0 7.0 70 439-509 39-113 (141)
338 PF03130 HEAT_PBS: PBS lyase H 42.2 35 0.00076 19.7 2.7 14 360-373 1-14 (27)
339 PF04499 SAPS: SIT4 phosphatas 42.0 1.5E+02 0.0032 31.2 9.0 74 166-239 62-149 (475)
340 PF12054 DUF3535: Domain of un 40.7 4.4E+02 0.0095 27.4 15.7 108 97-210 102-211 (441)
341 PF07923 N1221: N1221-like pro 39.1 58 0.0013 31.7 5.3 55 251-305 58-126 (293)
342 KOG2152 Sister chromatid cohes 38.8 5.8E+02 0.013 28.2 18.5 41 198-238 364-405 (865)
343 PF07923 N1221: N1221-like pro 38.0 86 0.0019 30.5 6.3 64 386-449 60-127 (293)
344 PF06685 DUF1186: Protein of u 37.7 3.6E+02 0.0078 25.5 15.8 61 167-239 74-143 (249)
345 PF08216 CTNNBL: Catenin-beta- 37.4 68 0.0015 25.9 4.4 44 270-315 63-106 (108)
346 PF12054 DUF3535: Domain of un 36.8 5E+02 0.011 27.0 12.4 105 387-502 313-434 (441)
347 PF09324 DUF1981: Domain of un 36.3 96 0.0021 23.9 5.1 67 435-508 14-85 (86)
348 KOG2549 Transcription initiati 34.2 5.5E+02 0.012 27.3 11.3 136 260-413 214-368 (576)
349 PF08389 Xpo1: Exportin 1-like 34.2 2.6E+02 0.0057 23.2 8.3 49 96-150 100-148 (148)
350 KOG1992 Nuclear export recepto 33.4 7.4E+02 0.016 27.9 21.7 138 93-238 372-527 (960)
351 KOG2149 Uncharacterized conser 33.1 3.5E+02 0.0075 27.4 9.5 115 346-471 60-174 (393)
352 PF09758 FPL: Uncharacterised 32.9 3.2E+02 0.007 23.6 9.0 125 244-372 17-148 (149)
353 PF11791 Aconitase_B_N: Aconit 32.3 1.1E+02 0.0025 26.3 5.2 44 361-415 80-123 (154)
354 KOG1087 Cytosolic sorting prot 32.2 1.1E+02 0.0023 32.0 6.1 71 439-510 39-111 (470)
355 PF08713 DNA_alkylation: DNA a 31.9 1.6E+02 0.0036 26.6 7.0 109 168-294 87-196 (213)
356 PF11791 Aconitase_B_N: Aconit 31.9 1.1E+02 0.0024 26.4 5.0 28 440-467 96-123 (154)
357 PF14663 RasGEF_N_2: Rapamycin 31.8 1E+02 0.0022 25.2 4.9 39 167-207 9-47 (115)
358 PF12074 DUF3554: Domain of un 31.6 5.2E+02 0.011 25.5 15.6 203 293-513 20-237 (339)
359 cd03571 ENTH_epsin ENTH domain 31.5 1.1E+02 0.0024 25.4 5.0 70 440-509 39-116 (123)
360 cd08050 TAF6 TATA Binding Prot 30.5 3E+02 0.0066 27.4 8.9 72 296-374 211-298 (343)
361 PF08389 Xpo1: Exportin 1-like 30.3 1.3E+02 0.0028 25.2 5.6 63 344-410 82-148 (148)
362 PF12397 U3snoRNP10: U3 small 29.0 3.2E+02 0.0069 22.3 9.9 67 344-416 6-75 (121)
363 KOG2374 Uncharacterized conser 28.9 1.4E+02 0.0031 30.8 6.1 88 295-395 6-93 (661)
364 PF12765 Cohesin_HEAT: HEAT re 28.9 85 0.0018 20.4 3.1 25 343-367 17-41 (42)
365 PF12726 SEN1_N: SEN1 N termin 27.8 8.9E+02 0.019 27.0 27.7 114 387-513 442-555 (727)
366 PF01365 RYDR_ITPR: RIH domain 26.8 1.5E+02 0.0032 27.0 5.7 101 201-306 35-153 (207)
367 KOG4524 Uncharacterized conser 26.8 6.1E+02 0.013 29.0 10.7 90 85-177 806-900 (1014)
368 PF08713 DNA_alkylation: DNA a 26.2 1.3E+02 0.0028 27.4 5.1 75 297-385 122-196 (213)
369 KOG2038 CAATT-binding transcri 25.9 1.9E+02 0.004 31.9 6.5 70 387-471 305-374 (988)
370 KOG4464 Signaling protein RIC- 25.6 7.4E+02 0.016 25.4 21.6 123 144-284 89-233 (532)
371 PF12463 DUF3689: Protein of u 24.4 5.2E+02 0.011 25.3 8.9 81 207-287 93-178 (303)
372 KOG2085 Serine/threonine prote 24.4 7.8E+02 0.017 25.2 15.1 40 199-238 167-206 (457)
373 PF09758 FPL: Uncharacterised 23.8 3.6E+02 0.0079 23.3 6.9 126 375-508 15-146 (149)
374 PF08767 CRM1_C: CRM1 C termin 23.6 6E+02 0.013 25.0 9.6 137 312-470 43-197 (319)
375 KOG2154 Predicted nucleolar pr 23.4 1.7E+02 0.0037 30.1 5.5 76 438-513 355-452 (505)
376 KOG0413 Uncharacterized conser 22.8 1.2E+03 0.026 26.9 20.3 122 146-283 951-1074(1529)
377 PF12783 Sec7_N: Guanine nucle 21.8 3.1E+02 0.0066 23.9 6.5 72 344-416 73-147 (168)
378 PF09205 DUF1955: Domain of un 21.7 2.7E+02 0.0059 23.7 5.5 34 382-415 12-46 (161)
379 PF06012 DUF908: Domain of Unk 21.6 2.6E+02 0.0056 27.7 6.6 51 451-507 1-51 (329)
380 PF13925 Katanin_con80: con80 21.6 3.1E+02 0.0066 24.0 6.3 71 297-375 30-100 (164)
381 KOG2056 Equilibrative nucleosi 21.4 2E+02 0.0044 28.4 5.5 58 450-507 71-134 (336)
382 KOG4524 Uncharacterized conser 21.3 2.9E+02 0.0063 31.4 7.1 72 344-416 803-877 (1014)
383 PF06367 Drf_FH3: Diaphanous F 21.3 3E+02 0.0065 24.7 6.5 72 437-508 20-98 (197)
384 KOG2676 Uncharacterized conser 21.0 1.1E+02 0.0025 30.2 3.6 55 186-240 375-431 (478)
385 cd03562 CID CID (CTD-Interacti 20.9 4.3E+02 0.0093 21.2 6.8 83 356-458 17-99 (114)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.7e-105 Score=733.06 Aligned_cols=487 Identities=30% Similarity=0.492 Sum_probs=440.7
Q ss_pred CCCCccCcccccccccccC--chHHhhhH-HHHHHHhhHhhHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHHhhh
Q 010080 1 MADDSLNHHKRDPIKSSVG--NVAAQRRR-QNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQT 77 (518)
Q Consensus 1 ~~~~~~~~~r~~~~k~~~~--~~~~~rr~-~~~~~~rk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (518)
|.++|.|++||.+||.+|. .+++|||| +++++|||+||||.|.|||+. ++..++.+++. .+-++
T Consensus 1 ~~srf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl-~dv~e~a~ss~----i~meq-------- 67 (526)
T COG5064 1 STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNL-ADVSEEAESSF----IPMEQ-------- 67 (526)
T ss_pred CCcccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccchhhhcc----CchhH--------
Confidence 5789999999999998864 45555555 599999999999999999975 33333332110 01111
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 010080 78 SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK 157 (518)
Q Consensus 78 ~~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~ 157 (518)
....+++++.+.+.|+|.+.++.|+..||++||.+..||++.+|++|++|++|+||.....+.++|||+|+|||||+|+
T Consensus 68 -q~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 68 -QFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred -HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 1235778888888899999999999999999999999999999999999999999976666788999999999999999
Q ss_pred hHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHH
Q 010080 158 QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWAL 233 (518)
Q Consensus 158 ~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L 233 (518)
..+++.++ |+||.|+++|.+ ++.+|+++++|+|||||+|++.+|++++++|++.+++.++.+. +.++.|+++|+|
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s-~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSS-TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcC-chHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Confidence 99999998 799999999988 7899999999999999999999999999999999999999866 569999999999
Q ss_pred HHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccch
Q 010080 234 SNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL 313 (518)
Q Consensus 234 ~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~ 313 (518)
+|||++++|+|....+ ...+|.|.+++.+.|++++.+|||+++||++++.+.++.+++.|..++|+++| .|++..++
T Consensus 226 SNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL-s~~sa~iq 302 (526)
T COG5064 226 SNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL-SHESAKIQ 302 (526)
T ss_pred HHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh-cCcccccc
Confidence 9999999999887764 58999999999999999999999999999999999999999999999999999 58999999
Q ss_pred hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHH
Q 010080 314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLH 393 (518)
Q Consensus 314 ~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~ 393 (518)
+|++|.+|||++|+|.|++.+|++| +++.+..+|.+++..+|++|||+||||++|+.+++|++++++++|+|++
T Consensus 303 tPalR~vGNIVTG~D~QTqviI~~G------~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ 376 (526)
T COG5064 303 TPALRSVGNIVTGSDDQTQVIINCG------ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH 376 (526)
T ss_pred CHHHHhhcCeeecCccceehheecc------cHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHH
Confidence 9999999999999999999999985 9999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC--
Q 010080 394 LLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN-- 471 (518)
Q Consensus 394 lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~-- 471 (518)
+|++.+++++||||||++|.+++.. +.| +++++|+++|+|++||++|...|.+++.++|++++++|+.++.
T Consensus 377 lls~ae~k~kKEACWAisNatsgg~---~~P----D~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~ 449 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATSGGL---NRP----DIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDR 449 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccc---CCc----hHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHH
Confidence 9999999999999999999988532 344 7889999999999999999999999999999999999986642
Q ss_pred -------CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCCCC
Q 010080 472 -------HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518 (518)
Q Consensus 472 -------~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~~~ 518 (518)
+.|..++|++||++.|+.||.+.|.+||.+|+.||++||++||+.||
T Consensus 450 ~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~ 503 (526)
T COG5064 450 LRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDE 503 (526)
T ss_pred HhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhh
Confidence 24678999999999999999999999999999999999999998765
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-97 Score=731.96 Aligned_cols=478 Identities=33% Similarity=0.545 Sum_probs=425.6
Q ss_pred CccCcccccccccccCchH--HhhhHHHHHHHhhHhhHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHHhhhHHHH
Q 010080 4 DSLNHHKRDPIKSSVGNVA--AQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAV 81 (518)
Q Consensus 4 ~~~~~~r~~~~k~~~~~~~--~~rr~~~~~~~rk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (518)
++....|+++||+++.+.+ ||||+++.|++||+||||.|.|||+. ......++ ..+.+ + ...
T Consensus 2 ~~~~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~-~~~~~~~~-----~~~~~--~--------~~~ 65 (514)
T KOG0166|consen 2 RGSSNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRND-EEELMLDE-----LLSDS--Q--------SQA 65 (514)
T ss_pred CchhHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhh-hhhccccc-----ccchh--H--------HHh
Confidence 3456788899997764443 44455699999999999999999961 10000000 01100 1 011
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~ 161 (518)
.....+++++.|+++..++.|+..+|+++|.+++||++.++.+|+||.||++|..++++.+|+||+|+|||||+|+++++
T Consensus 66 ~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 66 SNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence 22455566667999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC-hhHHHHHHHHHHHhhc
Q 010080 162 KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-GSTVRTAAWALSNLIK 238 (518)
Q Consensus 162 ~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nL~~ 238 (518)
+.++ |+||.|+.+|.+ ++..|+++|+|+||||++|++.+|++++.+|++++|+.++..++ ..+.++++|+|+|||+
T Consensus 146 ~~vv~agavp~fi~Ll~s-~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSS-PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred cccccCCchHHHHHHhcC-CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 9999 799999999998 79999999999999999999999999999999999999999765 5899999999999999
Q ss_pred CCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhh
Q 010080 239 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 318 (518)
Q Consensus 239 ~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~ 318 (518)
+++|.|.++. ...++|.|..++++.|++++.++||+|+||++++++.++++++.|+++.|+++|. +.+..++.||+|
T Consensus 225 gk~P~P~~~~--v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~-~~~~~v~~PaLR 301 (514)
T KOG0166|consen 225 GKNPSPPFDV--VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG-HSSPKVVTPALR 301 (514)
T ss_pred CCCCCCcHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc-CCCcccccHHHh
Confidence 9988877665 4699999999999999999999999999999999999999999999999999994 889999999999
Q ss_pred hhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC
Q 010080 319 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST 397 (518)
Q Consensus 319 ~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~ 397 (518)
++|||++|++.||+.++++| ++|.|..++. ++..+++++|||+||||++|+++|+++++++|++|.|+++|++
T Consensus 302 aiGNIvtG~d~QTq~vi~~~------~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 302 AIGNIVTGSDEQTQVVINSG------ALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred hccceeeccHHHHHHHHhcC------hHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc
Confidence 99999999999999999874 9999999998 6667899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC------
Q 010080 398 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN------ 471 (518)
Q Consensus 398 ~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~------ 471 (518)
+++++||||+|||+|++.+ |+ .+|+.||++.|+|++||++|..+|++++.++|++|++|++.++.
T Consensus 376 ~ef~~rKEAawaIsN~ts~-----g~----~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~ 446 (514)
T KOG0166|consen 376 AEFDIRKEAAWAISNLTSS-----GT----PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT 446 (514)
T ss_pred cchHHHHHHHHHHHhhccc-----CC----HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999874 45 48889999999999999999999999999999999999986532
Q ss_pred CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCC
Q 010080 472 HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGL 516 (518)
Q Consensus 472 ~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~ 516 (518)
+++..+||++||+++||.||+|+|.+||++|.+||++||++|+++
T Consensus 447 n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~~ 491 (514)
T KOG0166|consen 447 NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDDE 491 (514)
T ss_pred cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCccc
Confidence 466799999999999999999999999999999999999997554
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=3.2e-43 Score=396.43 Aligned_cols=404 Identities=21% Similarity=0.178 Sum_probs=337.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHh
Q 010080 85 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL 164 (518)
Q Consensus 85 ~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v 164 (518)
+.++..+.++++..+.+|+..+.++.+... .++..+++.|+||.|+++|+++++...+.+|+|+|+||+++++++++.+
T Consensus 192 p~LV~LLsS~d~~lQ~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~I 270 (2102)
T PLN03200 192 DILVKLLSSGNSDAQANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAI 270 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 334445568999999999998877655533 3678899999999999999876656778889999999999999999999
Q ss_pred c--CChHHHHHhhcCCC--------CHHHHHHHHHHHHhhhCCChh-----------hHHHH---HhcCChhHHHhhhCC
Q 010080 165 L--PALPLLIAHLGEKS--------SSPVAEQCAWALGNVAGEGEE-----------FRNVL---LSQGALPPLARMMLP 220 (518)
Q Consensus 165 ~--~~v~~Lv~lL~~~~--------~~~v~~~a~~~L~nla~d~~~-----------~r~~~---~~~g~i~~L~~ll~~ 220 (518)
+ |++|.|+.++.++. +..++++|+|+|+|||++.+. .|+.. ...|++++++.+++.
T Consensus 271 v~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~ 350 (2102)
T PLN03200 271 ADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDS 350 (2102)
T ss_pred HHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCC
Confidence 8 79999999997522 245699999999999997544 33322 456889999998886
Q ss_pred CChhHH----HHHHHHHHHhhcCCCCCchhh-----------------HHHhhchHHHHHHHhccCChhHHHHHHHHHHH
Q 010080 221 NKGSTV----RTAAWALSNLIKGPDPKPATE-----------------LIKVDGLLDAILRHLKRADEELTTEVAWVVVY 279 (518)
Q Consensus 221 ~~~~~~----~~a~~~L~nL~~~~~~~~~~~-----------------~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 279 (518)
++.... ++++|+|.+||++++|.+..+ .+...++++.|+.+|...+.+++.+++|+|.|
T Consensus 351 ~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~ 430 (2102)
T PLN03200 351 SAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSS 430 (2102)
T ss_pred chhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHH
Confidence 644333 478899999999877665221 23345778899999999999999999999999
Q ss_pred hhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhh
Q 010080 280 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 359 (518)
Q Consensus 280 L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~ 359 (518)
|++++++.++.+.+.|+++.|+++|. +++..++.+++++|+|++.+++++++.++++ |++|.|+++|.+++..
T Consensus 431 L~~~~~e~~~aIi~~ggIp~LV~LL~-s~s~~iQ~~A~~~L~nLa~~ndenr~aIiea------GaIP~LV~LL~s~~~~ 503 (2102)
T PLN03200 431 LCCGKGGLWEALGGREGVQLLISLLG-LSSEQQQEYAVALLAILTDEVDESKWAITAA------GGIPPLVQLLETGSQK 503 (2102)
T ss_pred HhCCCHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC------CCHHHHHHHHcCCCHH
Confidence 99998999999999999999999995 7788999999999999999998888888876 5999999999999999
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHH-hCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC
Q 010080 360 LKKEAAWVLSNIAAGSVEHKQLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 438 (518)
Q Consensus 360 i~~~a~~~Lsnl~~~~~~~~~~li-~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g 438 (518)
++++|+|+|+||+.++ ++++.++ ++|++|+|+++|++++++++++|+|+|+|++.+. . .+
T Consensus 504 iqeeAawAL~NLa~~~-~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~-----d----~~--------- 564 (2102)
T PLN03200 504 AKEDSATVLWNLCCHS-EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA-----D----AA--------- 564 (2102)
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc-----c----hh---------
Confidence 9999999999999865 5556655 7899999999999999999999999999998742 1 12
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcc-hhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCC
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG-TKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYG 515 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~-~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~ 515 (518)
.+++|+++|.++++.++..++++|.+|+........ .......||++.|.+|+.|+++++|+.|..+|.+||....+
T Consensus 565 ~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 565 TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 348899999999999999999999999876543211 22344679999999999999999999999999999986644
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-40 Score=329.53 Aligned_cols=363 Identities=21% Similarity=0.329 Sum_probs=315.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHH
Q 010080 127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 203 (518)
Q Consensus 127 ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 203 (518)
.+.+++.+.+++ ...+++|...+.-+.+... .....++ |.||.|+..|....++.++..|+|+|.|||..+.+.-.
T Consensus 68 ~~~~~~~~~S~~-~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDD-PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCC-HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 667777777766 4457888888887764432 2344444 89999999998767899999999999999999999999
Q ss_pred HHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh-hHHHHHHHHHHHhhc
Q 010080 204 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-ELTTEVAWVVVYLSA 282 (518)
Q Consensus 204 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~ 282 (518)
.+++.|++|.++.++.+++..+++.|+|+|+|++.. ...+++.+...|+++.|+.++...+. .++..+.|+|+|||.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagd--s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGD--SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccC--ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999954 34678888899999999999998776 788999999999999
Q ss_pred CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080 283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 362 (518)
Q Consensus 283 ~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~ 362 (518)
+.+..-..-.-..++|.|..++ .+.+.+++..|||++++++.+.++.++.++++| ++|.|+.+|.+.+..++.
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~g------vv~~LV~lL~~~~~~v~~ 297 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAG------VVPRLVDLLGHSSPKVVT 297 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcc------chHHHHHHHcCCCccccc
Confidence 8754444344457799999998 689999999999999999999999999999864 999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchH
Q 010080 363 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS 441 (518)
Q Consensus 363 ~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~ 441 (518)
.|..+++||++|++.+.+.++++|++|.|..+|. +....+++||||+|+|++.+ + .+|++++++.|++|
T Consensus 298 PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG------~----~~qiqaVida~l~p 367 (514)
T KOG0166|consen 298 PALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG------N----QEQIQAVIDANLIP 367 (514)
T ss_pred HHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC------C----HHHHHHHHHcccHH
Confidence 9999999999999999999999999999999998 56667999999999999873 4 58999999999999
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080 442 GFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510 (518)
Q Consensus 442 ~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f 510 (518)
.|+.+|...|-++++.|.++|.|+..++.. .-...+.+.|.+..+.+|..-.+..+...+..-++..+
T Consensus 368 ~Li~~l~~~ef~~rKEAawaIsN~ts~g~~-~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 368 VLINLLQTAEFDIRKEAAWAISNLTSSGTP-EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENIL 435 (514)
T ss_pred HHHHHHhccchHHHHHHHHHHHhhcccCCH-HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999877642 23456778999999999988888888777776666554
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=366.14 Aligned_cols=409 Identities=19% Similarity=0.193 Sum_probs=349.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-
Q 010080 87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL- 165 (518)
Q Consensus 87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~- 165 (518)
++..+.+.+.+.|..++..|+.+ +.+.+..++.+++.|++|.|+++|.+++ ...|..|+|+|.|++.++++++..++
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L-~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIie 486 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSL-CCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITA 486 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHH-hCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33445678899999999999995 5444566788999999999999999765 56778899999999999998998888
Q ss_pred -CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCc
Q 010080 166 -PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP 244 (518)
Q Consensus 166 -~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~ 244 (518)
|++|.|+.+|.+ ++.+++++|+|+|+|++.++++.+..+...|++|+|+.+|++.+...++.++|+|.||+.+.++..
T Consensus 487 aGaIP~LV~LL~s-~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~ 565 (2102)
T PLN03200 487 AGGIPPLVQLLET-GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT 565 (2102)
T ss_pred CCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH
Confidence 899999999987 789999999999999999888888888899999999999999999999999999999975422110
Q ss_pred h-----------------------------------hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhh
Q 010080 245 A-----------------------------------TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATS 289 (518)
Q Consensus 245 ~-----------------------------------~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~ 289 (518)
. ...+...+++|.|+.++.+++++++..|+|+|.+++.+..+.++
T Consensus 566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 0 00011357999999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC-cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHH
Q 010080 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL 368 (518)
Q Consensus 290 ~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~L 368 (518)
.++..|+++.++.+| .+.+.+++..+.++|+|++.+.. .+...+++. |++++|+.+|.+.+..++..|+.+|
T Consensus 646 avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~------GaV~pL~~LL~~~d~~v~e~Al~AL 718 (2102)
T PLN03200 646 SLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAE------DAIKPLIKLAKSSSIEVAEQAVCAL 718 (2102)
T ss_pred HHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHc------CCHHHHHHHHhCCChHHHHHHHHHH
Confidence 999999999999999 47888899999999999997543 334455654 6999999999999999999999999
Q ss_pred HHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHH-HHHHHHhcCchHHHHHhh
Q 010080 369 SNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE-HLVSLVGRGCLSGFIDLV 447 (518)
Q Consensus 369 snl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~-~~~~l~~~g~i~~L~~lL 447 (518)
.||+... +....+.+.|++++|+.+|++++++.|+.|+|+|.++|.+.. . .+ ...++...|++.+|+++|
T Consensus 719 anLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~-----~---~~~~~~~~~~~g~v~~l~~~L 789 (2102)
T PLN03200 719 ANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP-----V---DDVLKDSVQCRGTVLALVDLL 789 (2102)
T ss_pred HHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC-----h---hHHHHHHHHHhCcHHHHHHHH
Confidence 9998876 567778889999999999999999999999999999998531 1 12 236677899999999999
Q ss_pred ccCCHHHHHH--HHHHHHHHHccCCC-----CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccC
Q 010080 448 RSADIEAARL--GLQFMELVLRGMPN-----HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDY 514 (518)
Q Consensus 448 ~~~d~~~~~~--~l~~l~~il~~~~~-----~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~ 514 (518)
...|.+.... +|++|..+.+.... ++....+|..++++.|.....|.+|.+|++|.+||+++..+-.
T Consensus 790 ~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 790 NSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred hcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 9999887776 99999999985332 2446788999999999777799999999999999999988754
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-39 Score=301.03 Aligned_cols=363 Identities=20% Similarity=0.299 Sum_probs=308.4
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhc-CChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080 126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAA-GKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 202 (518)
Q Consensus 126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~-~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 202 (518)
-+|.|.+-|-+++ -+.|..|..-+..+-+ .+.--.+.++ |.||.|+.+|.+.....++-.|+|+|.||+.......
T Consensus 72 elp~lt~~l~SdD-ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 72 ELPQLTQQLFSDD-IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhHHHHHHHhhhH-HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 3477888777655 4556777777776654 3334566777 7999999999766778899999999999999887888
Q ss_pred HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh--hHHHHHHHHHHHh
Q 010080 203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE--ELTTEVAWVVVYL 280 (518)
Q Consensus 203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~L 280 (518)
..++++|++|.++++|.+++..++++++|+|.|++.. ...+++.+...|++..++.++.+.-. .++..+.|+|+||
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD--S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD--SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC--chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 8899999999999999999999999999999999943 35789999999999999999987655 7899999999999
Q ss_pred hcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhh
Q 010080 281 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL 360 (518)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i 360 (518)
|+|.+..-..-.-...+|.|.+++ .+.+++++..|||+|++++.+..+.++.+++.| ..+.|+.+|.|++..+
T Consensus 229 cRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g------~~~RLvElLs~~sa~i 301 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVG------IPGRLVELLSHESAKI 301 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcC------CcHHHHHHhcCccccc
Confidence 997543333222345688888888 588999999999999999999999999999875 8999999999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch
Q 010080 361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 440 (518)
Q Consensus 361 ~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i 440 (518)
+..|+..++||..|++.|.+.++++|+++.+-.+|+++...+||||||+|+|++.+ + .+|++++++.+.+
T Consensus 302 qtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAG------n----teqiqavid~nli 371 (526)
T COG5064 302 QTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAG------N----TEQIQAVIDANLI 371 (526)
T ss_pred cCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccC------C----HHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999874 3 4899999999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcc-hhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080 441 SGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG-TKLVEREDGIDAMERFQFHENEDLRNMANGLVDK 508 (518)
Q Consensus 441 ~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~-~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~ 508 (518)
|+|+.+|...+..+.+.+++++.|...++-+-+. ...+.+.|.++.|.++..-.+..|-+.+..-++.
T Consensus 372 PpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~en 440 (526)
T COG5064 372 PPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIEN 440 (526)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHH
Confidence 9999999999999999999999999987755443 2567788999999888777666566666555543
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.3e-27 Score=219.51 Aligned_cols=350 Identities=19% Similarity=0.207 Sum_probs=289.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CC
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PA 167 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~ 167 (518)
.+++.|...|..|...+-++--+..+.-. +++.+.+..|+.-+..+. .+.|..|..|++|++..++ .+..+. |+
T Consensus 93 llqs~d~~Iq~aa~~alGnlAVn~enk~l--iv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~-nk~kiA~sGa 168 (550)
T KOG4224|consen 93 LLQSCDKCIQCAAGEALGNLAVNMENKGL--IVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDS-NKVKIARSGA 168 (550)
T ss_pred HHhCcchhhhhhhhhhhccceeccCCceE--EEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcccc-chhhhhhccc
Confidence 33588999999999888886555444433 556555555554443333 4567889999999996643 344443 89
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 247 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 247 (518)
+.++..+-++ .+..++..+..+|.|+.. +.+.|..++..|++|.|+.++.+.+..++..++.+++|++-.. ..+.
T Consensus 169 L~pltrLaks-kdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~---~~Rk 243 (550)
T KOG4224|consen 169 LEPLTRLAKS-KDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR---RARK 243 (550)
T ss_pred hhhhHhhccc-chhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH---HHHH
Confidence 9999995554 889999999999999998 7899999999999999999999999999999999999998542 3344
Q ss_pred HHHhhc--hHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080 248 LIKVDG--LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 248 ~i~~~~--~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 325 (518)
.+.+.+ .+|.|+.++.++++.+...|..+|.+|+. +.++...+.+.|.+|.++++| +++..+.......||.||+-
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrnisi 321 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELL-QSPMGPLILASVACIRNISI 321 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhccc
Confidence 555555 99999999999999999999999999997 567888899999999999999 57777777788899999986
Q ss_pred CCCcccceeeccCCCchhhhHHHHHHHhccChh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHH
Q 010080 326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 404 (518)
Q Consensus 326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~ 404 (518)
..-.. -.+++ .|++.+|+.+|...+. .++-.|.-+|.|+++.+......++++|.+|.++.++-++...+|.
T Consensus 322 hplNe-~lI~d------agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqs 394 (550)
T KOG4224|consen 322 HPLNE-VLIAD------AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQS 394 (550)
T ss_pred ccCcc-cceec------ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHH
Confidence 65332 33454 4699999999988765 5999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080 405 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 405 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~ 468 (518)
+...++.-++... ....++.+.|.++.|+.++.+...++...+..+|.|+...
T Consensus 395 eisac~a~Lal~d-----------~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 395 EISACIAQLALND-----------NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHHHHHHHhcc-----------ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 9999999888752 3357899999999999999999999999999999999754
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.8e-26 Score=212.53 Aligned_cols=350 Identities=18% Similarity=0.230 Sum_probs=292.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChH
Q 010080 92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALP 169 (518)
Q Consensus 92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~ 169 (518)
.+++.+.|..++.++-++.....+. ..+..+|++..+.++-++.+ ...|..|..+|.|+... .+.++.++ |++|
T Consensus 136 mtd~vevqcnaVgCitnLaT~d~nk--~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs-~EnRr~LV~aG~lp 211 (550)
T KOG4224|consen 136 MTDGVEVQCNAVGCITNLATFDSNK--VKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHS-RENRRVLVHAGGLP 211 (550)
T ss_pred cCCCcEEEeeehhhhhhhhccccch--hhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhh-hhhhhhhhccCCch
Confidence 4566778889999999977775544 45788999999999555544 56778899999999854 45666666 8999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcC--ChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080 170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG--ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 247 (518)
Q Consensus 170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g--~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 247 (518)
.|+.++.+ .+.++++.|..+++||+. ....|+.+.+.+ .+|.|+.++.++++.++-.|..+|.||+... .+.++
T Consensus 212 vLVsll~s-~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~e 287 (550)
T KOG4224|consen 212 VLVSLLKS-GDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQRE 287 (550)
T ss_pred hhhhhhcc-CChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhH
Confidence 99999998 799999999999999999 468899999998 9999999999999999999999999999653 45566
Q ss_pred HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCC
Q 010080 248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD 327 (518)
Q Consensus 248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~ 327 (518)
++ .+|.+|.++++|+++.-........|+.||+-. +-+-..+++.|.+.+||.+|....+.+++..|..+|.|++...
T Consensus 288 iv-~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 288 IV-EAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred HH-hcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 65 699999999999988877778888899999973 4455677899999999999965556669999999999999877
Q ss_pred CcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHH
Q 010080 328 SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA 407 (518)
Q Consensus 328 ~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~ 407 (518)
......+.++ |++|.+..++......++.+...+++.++-. +.....+.+.|++|.|+.++.+.+.+++-+|+
T Consensus 366 e~n~~~i~es------gAi~kl~eL~lD~pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaA 438 (550)
T KOG4224|consen 366 EHNVSVIRES------GAIPKLIELLLDGPVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAA 438 (550)
T ss_pred hhhhHHHhhc------CchHHHHHHHhcCChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhcccHH
Confidence 7777777765 5999999999999999999999999988754 46677899999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHHHh------cCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 408 YVLGNLCVSPTEGEGKPKLIQEHLVSLVG------RGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 408 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~------~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
.+|.|++.+ .++...+++ .|.-..|..++.+.+.-+...+.+.+..++...
T Consensus 439 aAL~Nlss~-----------v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 439 AALINLSSD-----------VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HHHHhhhhh-----------hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 999999875 233333433 355556888998888888999999999998653
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=1.2e-22 Score=213.83 Aligned_cols=385 Identities=20% Similarity=0.249 Sum_probs=298.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~ 161 (518)
..+..++. .+ ......|+..|-++.... .....+.+.|+++.|+.+|++++ .++...++++|.+++-... ++
T Consensus 253 kk~~~l~~---kQ-eqLlrv~~~lLlNLAed~--~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~E-NK 324 (708)
T PF05804_consen 253 KKLQTLIR---KQ-EQLLRVAFYLLLNLAEDP--RVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKE-NK 324 (708)
T ss_pred HHHHHHHH---HH-HHHHHHHHHHHHHHhcCh--HHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHH-HH
Confidence 45555554 22 223334555566643332 22245678999999999999775 5676779999999996654 55
Q ss_pred HHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 010080 162 KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239 (518)
Q Consensus 162 ~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 239 (518)
..+. |+||.|++++.+ ++.+++..++++|.|++. ++..|..++..|++|.|+.+|.++ ..+..++..|++|+..
T Consensus 325 ~~m~~~giV~kL~kLl~s-~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d 400 (708)
T PF05804_consen 325 DEMAESGIVEKLLKLLPS-ENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD 400 (708)
T ss_pred HHHHHcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC
Confidence 5555 799999999988 788999999999999999 568899999999999999999865 3556788999999976
Q ss_pred CCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhh
Q 010080 240 PDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 318 (518)
Q Consensus 240 ~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~ 318 (518)
+. .+.++...+++|.+++++. .+++++..++.+.+.||+. ++.+.+.+.+.|+++.|++...+..+ .-.++
T Consensus 401 d~---~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlK 472 (708)
T PF05804_consen 401 DE---ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRD----PLLLK 472 (708)
T ss_pred Hh---hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhccc----HHHHH
Confidence 43 3446666789999999766 4567788889999999998 55678999998999999998754333 22457
Q ss_pred hhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC
Q 010080 319 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST 397 (518)
Q Consensus 319 ~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~ 397 (518)
.+.|++.++.. ++..+ .+++..|+.++..+ +....-++..+|+|++..+....+.+.+.+++|.|.++|..
T Consensus 473 lIRNiS~h~~~-~k~~f-------~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~ 544 (708)
T PF05804_consen 473 LIRNISQHDGP-LKELF-------VDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP 544 (708)
T ss_pred HHHHHHhcCch-HHHHH-------HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC
Confidence 89999887743 32222 14777777777664 56899999999999998766666667788999999999965
Q ss_pred C--ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhcc--CCHHHHHHHHHHHHHHHccCCCCc
Q 010080 398 S--PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHE 473 (518)
Q Consensus 398 ~--~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~--~d~~~~~~~l~~l~~il~~~~~~~ 473 (518)
+ +.++.-|++..++.++..+ +....+.+.|+++.|+++|.. .|.+++.+++-+++.++.+.+.
T Consensus 545 g~~~dDl~LE~Vi~~gtla~d~-----------~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-- 611 (708)
T PF05804_consen 545 GASEDDLLLEVVILLGTLASDP-----------ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-- 611 (708)
T ss_pred CCCChHHHHHHHHHHHHHHCCH-----------HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH--
Confidence 3 5589999999999998752 345667799999999999996 5688999999999999987432
Q ss_pred chhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 010080 474 GTKLVEREDGIDAMERFQFHENEDLRNMANGLVD 507 (518)
Q Consensus 474 ~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~ 507 (518)
...++.+.+....+.+|.++.|++|++.|...++
T Consensus 612 r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ld 645 (708)
T PF05804_consen 612 REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALD 645 (708)
T ss_pred HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2355677888889999999999999998765554
No 10
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.4e-19 Score=185.22 Aligned_cols=388 Identities=18% Similarity=0.180 Sum_probs=287.7
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080 83 ELKSAVAYHGKG-AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161 (518)
Q Consensus 83 ~l~~~l~~~~s~-~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~ 161 (518)
++.++|++++.. |+..|++|+..+..+|+-.....+..+--..++|.|+.+|+...+.+++..|++||++++.--|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 778889988877 9999999999999999977655554444467899999999988888888999999999998888888
Q ss_pred HHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 010080 162 KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239 (518)
Q Consensus 162 ~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 239 (518)
..++ ++||.|+.-|..-+..+|.||++.+|-.|+.+. -..+++.|++...+.++.--....+|.|+-+..|+|..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888 499999998776678999999999999999854 35789999999999999877889999999999999986
Q ss_pred CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC---CchhhhHHHhcCchHHHHHHHccCC---Cccch
Q 010080 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL---SNVATSLLVKSGVLQLLVERLATSN---SLQLL 313 (518)
Q Consensus 240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~~~~~~~~~~~g~~~~Lv~lL~~~~---~~~v~ 313 (518)
-.+ ..++.+ ...+|.|..+|.+.|......+|-|+.+++++ .++..+.+..+|++.....+|.-.+ +..+.
T Consensus 325 i~s-d~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 325 IRS-DEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred CCC-ccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 433 334454 48999999999999999999999999999985 4677889999999999999885221 22334
Q ss_pred hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-------------------------------------
Q 010080 314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE------------------------------------- 356 (518)
Q Consensus 314 ~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~------------------------------------- 356 (518)
.-.++.+..++.+.+......+. .++...|..+|.+.
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k------~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~ 475 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLK------LDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEG 475 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHH------hhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccc
Confidence 45666777766664332211111 11222222222110
Q ss_pred -----------hhhhHHHHHH------------------HHH-------------Hhcc---------CCHHHHHHHHhC
Q 010080 357 -----------HRVLKKEAAW------------------VLS-------------NIAA---------GSVEHKQLIHSS 385 (518)
Q Consensus 357 -----------~~~i~~~a~~------------------~Ls-------------nl~~---------~~~~~~~~li~~ 385 (518)
......++.| .+. +.-. ..++..+.++.
T Consensus 476 i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~- 554 (1051)
T KOG0168|consen 476 IFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK- 554 (1051)
T ss_pred eeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-
Confidence 0000001111 111 1111 12233344433
Q ss_pred CCHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc-CchHHHHHhhccCCHHHHHHHHHHHH
Q 010080 386 EALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR-GCLSGFIDLVRSADIEAARLGLQFME 463 (518)
Q Consensus 386 ~~i~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~-g~i~~L~~lL~~~d~~~~~~~l~~l~ 463 (518)
.++|.|+++..+ .++.||..++.||..+..... -+.++.++.. .+-..+-.+|.++|..++-.+|+..+
T Consensus 555 ~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~---------seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAE 625 (1051)
T KOG0168|consen 555 DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSN---------SELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAE 625 (1051)
T ss_pred HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCC---------HHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHH
Confidence 389999999955 689999999999999987532 3567777755 45555667999999999999999999
Q ss_pred HHHccCCCCcchhHHHhhchHHHHHHHhcC
Q 010080 464 LVLRGMPNHEGTKLVEREDGIDAMERFQFH 493 (518)
Q Consensus 464 ~il~~~~~~~~~~~ie~~ggl~~l~~L~~~ 493 (518)
-|++..++ .+...|...|.+..+.+|...
T Consensus 626 iLmeKlpd-~F~~~F~REGV~~~v~~L~~~ 654 (1051)
T KOG0168|consen 626 ILMEKLPD-TFSPSFRREGVFHAVKQLSVD 654 (1051)
T ss_pred HHHHHhHH-HhhhhHhhhhHHHHHHHHhcc
Confidence 99988776 345667788999999988763
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.85 E-value=1.1e-18 Score=184.24 Aligned_cols=346 Identities=17% Similarity=0.196 Sum_probs=269.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CC
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PA 167 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~ 167 (518)
.+.+++.+..+.++..|++ ||.... ....+.+.|++|.|++++.+++ ..++..|+++|.|++.+.. .+..++ |.
T Consensus 298 ~Ldr~n~ellil~v~fLkk-LSi~~E-NK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd~~-~R~~mV~~Gl 373 (708)
T PF05804_consen 298 CLDRENEELLILAVTFLKK-LSIFKE-NKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFDPE-LRSQMVSLGL 373 (708)
T ss_pred HHcCCCHHHHHHHHHHHHH-HcCCHH-HHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcCHH-HHHHHHHCCC
Confidence 3458889999999999999 555432 3477889999999999999866 4566779999999998754 566666 89
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
+|.|+.+|.+ +..+..|+.+|.|++. .++.|..+...+++|.++.++- .++..+...+++.+.||+..+ .+.
T Consensus 374 IPkLv~LL~d---~~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~---rna 446 (708)
T PF05804_consen 374 IPKLVELLKD---PNFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK---RNA 446 (708)
T ss_pred cHHHHHHhCC---CchHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH---HHH
Confidence 9999999975 3466779999999999 4588999999999999998765 456677778899999999763 234
Q ss_pred hHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC
Q 010080 247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 326 (518)
Q Consensus 247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 326 (518)
+.+...++++.|+.......+.+ .+..+.|++.++......+ .+.+..|+..+....+.+....++.+|+|+...
T Consensus 447 qlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 447 QLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELF--VDFIGDLAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred HHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 56666788999987765433222 3358889998664333333 257888888886666788889999999999876
Q ss_pred CCcccceeeccCCCchhhhHHHHHHHhccC--hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--CChhH
Q 010080 327 DSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDI 402 (518)
Q Consensus 327 ~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~--~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v 402 (518)
+.+..+.+-+ .+++|.|..+|..+ ...+.-+++-.+|.++. .+.....+.+.|+++.|+.+|+. .|.++
T Consensus 522 ~ld~~~ll~~------~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~ 594 (708)
T PF05804_consen 522 DLDWAQLLQE------YNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEI 594 (708)
T ss_pred CcCHHHHHHh------CCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHH
Confidence 6544444433 47999999999754 34799999999999975 44666667789999999999954 46778
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH-hcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 403 KKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 403 ~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
.-..++++..+..+.+ -...++ +.+++..|++++.++++++..+|=.+|.-|..+.
T Consensus 595 VlQil~~f~~ll~h~~-----------tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 595 VLQILYVFYQLLFHEE-----------TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHHHHHHHHHHcChH-----------HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 8889999999998742 234555 5689999999999999999999888888887654
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.81 E-value=8.9e-18 Score=173.19 Aligned_cols=406 Identities=18% Similarity=0.189 Sum_probs=283.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH-
Q 010080 81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE- 159 (518)
Q Consensus 81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~- 159 (518)
-.++++.++++.+.++..|..|...+.. ++...+.-...+-+.|.||.||.+|.+.. .++|..|+|+|.|+..++..
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQH-lcfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQH-LCFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHH-HHhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCc
Confidence 3456666677779999999999888876 78877666667778999999999999865 67889999999999977655
Q ss_pred -HHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh-C-------CC------C
Q 010080 160 -ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM-L-------PN------K 222 (518)
Q Consensus 160 -~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll-~-------~~------~ 222 (518)
+.-++. ++||.++.+|....|.+++++...+|+|++. ++.++..++. ..+..|..-+ . ++ +
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~ 387 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-NDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAED 387 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-hhHHHHHHHH-HHHHHHHHhhcccccccCCCCccccccc
Confidence 566665 7999999999976789999999999999998 3455555444 3466665432 2 11 3
Q ss_pred hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc------cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCc
Q 010080 223 GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK------RADEELTTEVAWVVVYLSALSNVATSLLVKSGV 296 (518)
Q Consensus 223 ~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~ 296 (518)
..+..+++.||.|++... .+....+-...|.|..|+..++ ..|...+.++.-.|.||+..-. ..+
T Consensus 388 ~~vf~n~tgcLRNlSs~~-~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~--------~Ev 458 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAG-QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLE--------AEV 458 (717)
T ss_pred ceeeehhhhhhccccchh-HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhh--------hhc
Confidence 678999999999998642 2233334445789999998887 3466788889899999986321 112
Q ss_pred hHHHHHHHcc---CCCccchhhhhhhhhhhhcCCCccc-------ceeeccCCC--chhhhHHHHHHHhc-cChhhhHHH
Q 010080 297 LQLLVERLAT---SNSLQLLIPVLRSLGNLVAGDSSTI-------SDVLVPGHG--ITDQVIAVLVKCLK-SEHRVLKKE 363 (518)
Q Consensus 297 ~~~Lv~lL~~---~~~~~v~~~al~~L~nl~~~~~~~~-------~~~i~~G~~--~~~~~l~~L~~lL~-~~~~~i~~~ 363 (518)
.+.....+.. .....-......|.+.-....+... .....-|.+ +...++..-..+|. +.++.+.+.
T Consensus 459 p~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEa 538 (717)
T KOG1048|consen 459 PPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEA 538 (717)
T ss_pred CHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHH
Confidence 2222222210 0000000022233333322211110 000110111 23455655455554 456788999
Q ss_pred HHHHHHHhccCCH---HH-HHHH-HhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC
Q 010080 364 AAWVLSNIAAGSV---EH-KQLI-HSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 438 (518)
Q Consensus 364 a~~~Lsnl~~~~~---~~-~~~l-i~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g 438 (518)
++.+|.|++++.. .. ++.+ ....++|+|+.+|..++.+|.+.++.+|.|++.+. ..+.++..+
T Consensus 539 saGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~------------rnk~ligk~ 606 (717)
T KOG1048|consen 539 SAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI------------RNKELIGKY 606 (717)
T ss_pred hhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc------------hhhhhhhcc
Confidence 9999999999853 22 3334 45689999999999999999999999999999853 346778899
Q ss_pred chHHHHHhhccCC------HHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHHhhcC
Q 010080 439 CLSGFIDLVRSAD------IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH-ENEDLRNMANGLVDKYFG 511 (518)
Q Consensus 439 ~i~~L~~lL~~~d------~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~-~~~~i~~~a~~il~~~f~ 511 (518)
+|+.|++.|.... .+++..++..|.+|+..- ..+..-+.+.+|+++|..|..+ .++...+.|..++...|.
T Consensus 607 a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~--~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 607 AIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN--VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred hHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh--HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 9999999998643 578888888898888532 2346677789999999888655 466899999999988886
Q ss_pred cc
Q 010080 512 ED 513 (518)
Q Consensus 512 ~~ 513 (518)
..
T Consensus 685 y~ 686 (717)
T KOG1048|consen 685 YK 686 (717)
T ss_pred HH
Confidence 53
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.79 E-value=1.3e-17 Score=178.35 Aligned_cols=366 Identities=23% Similarity=0.235 Sum_probs=275.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCC--ChHHHHHHHHHHHHHhcCChH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS--PDEQLLEAAWCLTNIAAGKQE 159 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~--~~~~~~eA~~~L~nia~~~~~ 159 (518)
+-...++.++...|.+ +-.+.|+.+-+..... ..+..+|.+|.|+++|.-++ ..+....|-.+|+||....++
T Consensus 197 ets~sllsml~t~D~e---e~ar~fLemSss~esC--aamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD 271 (2195)
T KOG2122|consen 197 ETSNSLLSMLGTDDEE---EMARTFLEMSSSPESC--AAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD 271 (2195)
T ss_pred hhhhHHhhhcccCCHH---HHHHHHHHhccCchhh--HHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence 3334556566666664 3456666644443322 24567999999999998543 234556799999999977665
Q ss_pred HHHH-----hcCChHHHH-------HhhcCC----C--CHHH-HHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC
Q 010080 160 ETKA-----LLPALPLLI-------AHLGEK----S--SSPV-AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP 220 (518)
Q Consensus 160 ~~~~-----v~~~v~~Lv-------~lL~~~----~--~~~v-~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~ 220 (518)
.... ++-.+..+. .+|... . ..+- ..+|+.+|-.+++ ++++|..+-+.|++..+..|++-
T Consensus 272 ~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~v 350 (2195)
T KOG2122|consen 272 EKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQV 350 (2195)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHH
Confidence 4321 111222222 222221 0 1122 2477888889998 68999999999999999998861
Q ss_pred C------------ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080 221 N------------KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 288 (518)
Q Consensus 221 ~------------~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 288 (518)
. ...+++.+..+|.||..|+.. ....+....|++..++..|.+..+++....+.+|.||++..+.+.
T Consensus 351 Dh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~-NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nm 429 (2195)
T KOG2122|consen 351 DHEMHGPETNDGECNALRRYAGMALTNLTFGDVA-NKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNM 429 (2195)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhhcccccccc-chhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccH
Confidence 1 357999999999999998643 223355667999999999999999999999999999999766665
Q ss_pred hHH-HhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh----hhhHHH
Q 010080 289 SLL-VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH----RVLKKE 363 (518)
Q Consensus 289 ~~~-~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~----~~i~~~ 363 (518)
+.+ -+.|-+..|+..-........+..+|.+|.||+.+..+....+-+. .|.|..|+.+|.... -.|...
T Consensus 430 KkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaV-----DGALaFLVg~LSY~~qs~tLaIIEs 504 (2195)
T KOG2122|consen 430 KKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAV-----DGALAFLVGTLSYEGQSNTLAIIES 504 (2195)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcc-----cchHHHHHhhccccCCcchhhhhhc
Confidence 554 4678888888766555666788899999999998765554444332 489999999998762 367788
Q ss_pred HHHHHHHhc---cCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch
Q 010080 364 AAWVLSNIA---AGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 440 (518)
Q Consensus 364 a~~~Lsnl~---~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i 440 (518)
|-.+|.|+. +.+..++|.+.+++.+..|++.|++.+.-+..++|.+|+||... +| +.-++|++.|++
T Consensus 505 aGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR------~p----~DQq~LwD~gAv 574 (2195)
T KOG2122|consen 505 AGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR------SP----EDQQMLWDDGAV 574 (2195)
T ss_pred CccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC------CH----HHHHHHHhcccH
Confidence 888887765 45778999999999999999999999999999999999999874 33 334899999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 441 SGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 441 ~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
+.|.+++.++...+..-+..+|.|+|.+-
T Consensus 575 ~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 575 PMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999754
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=3.1e-14 Score=132.77 Aligned_cols=322 Identities=17% Similarity=0.197 Sum_probs=241.4
Q ss_pred HcCCHHHHHHHhcC--CCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCC-CCHHHHHHHHHHHHhhhCCCh
Q 010080 123 KAGAIPVLVQCLAF--GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGE 199 (518)
Q Consensus 123 ~~g~ip~Lv~~L~~--~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~-~~~~v~~~a~~~L~nla~d~~ 199 (518)
+.|..|.++..+.. ..+..+.+.++.+|..+..++++..++ .+...++.+|... ++.++....+.++..-|...+
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl~da--~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE 179 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDLFDA--EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHE 179 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcchhcc--ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhH
Confidence 35666766665542 222344577888888888777753332 3677777777542 567788888888888887788
Q ss_pred hhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCch-------hhHHHhhchHHHHHHHhc-cCChhHH
Q 010080 200 EFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPA-------TELIKVDGLLDAILRHLK-RADEELT 270 (518)
Q Consensus 200 ~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~-------~~~i~~~~~l~~L~~lL~-~~d~~v~ 270 (518)
.+|+.+++.++++.+.+.|.. ....+.|.++|++..|...++.... ...+...+++..|...+. .-||.++
T Consensus 180 ~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L 259 (461)
T KOG4199|consen 180 VNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSL 259 (461)
T ss_pred HHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHH
Confidence 999999999999999987774 4567999999999999876543321 123445667888888887 4578999
Q ss_pred HHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccch---hhhhhhhhhhhcCCCcccceeeccCCCchhhhHH
Q 010080 271 TEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL---IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIA 347 (518)
Q Consensus 271 ~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~---~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~ 347 (518)
.+++.+|..|+- .++.++.+.+.|++..|+.++.+++....+ ..+|..|..++ |+|.....+++ .|+++
T Consensus 260 ~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~------~gg~~ 331 (461)
T KOG4199|consen 260 VSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVE------KGGLD 331 (461)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHH------hcChH
Confidence 999999999997 667899999999999999999755555544 46777777776 55556666665 46899
Q ss_pred HHHHHhc--cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCC--hhHHHHHHHHHHHhcCCCCCCCCC
Q 010080 348 VLVKCLK--SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP--FDIKKEVAYVLGNLCVSPTEGEGK 423 (518)
Q Consensus 348 ~L~~lL~--~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~--~~v~~eA~~aL~nl~~~~~~~~~~ 423 (518)
.++.++. +.+|.|..++|.+++-|+-..|++...+++.|+-...++.|+... ..+|++|||.|.|++..+
T Consensus 332 ~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs------ 405 (461)
T KOG4199|consen 332 KIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS------ 405 (461)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh------
Confidence 9998873 457899999999999999999999999999999999999996533 469999999999999863
Q ss_pred chhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHH
Q 010080 424 PKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELV 465 (518)
Q Consensus 424 ~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~i 465 (518)
.+++..++.. ++..|+..-....+..-..+-.+|.-+
T Consensus 406 ----~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 406 ----AENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred ----hhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 3444555554 466677766666655544444455444
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.69 E-value=1.3e-13 Score=144.07 Aligned_cols=399 Identities=19% Similarity=0.189 Sum_probs=286.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CC
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PA 167 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~ 167 (518)
-++..+.+....++..|.+++.... + . .+ ..+..+.|...|.+++ +.++.-+++.|.+++.++......+. +.
T Consensus 46 ~L~~~~~e~v~~~~~iL~~~l~~~~-~-~-~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 46 CLNTSNREQVELICDILKRLLSALS-P-D-SL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHhhcChHHHHHHHHHHHHHHhccC-H-H-HH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 3446677777788888999887542 2 2 22 5778899999999766 56666799999999988776666666 58
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 247 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 247 (518)
++.++.+|.+ ++.+|...|+.+|.+++... ...+.++..+.++.|..++..++..++.-+..++.+++..+ ....+
T Consensus 121 ~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S--~~~~~ 196 (503)
T PF10508_consen 121 LPLIIQCLRD-PDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS--PEAAE 196 (503)
T ss_pred HHHHHHHHcC-CcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC--HHHHH
Confidence 9999999987 89999999999999999854 45567888888999999998877788888999999998663 34556
Q ss_pred HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCc----cchhh-hhhhhhh
Q 010080 248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL----QLLIP-VLRSLGN 322 (518)
Q Consensus 248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~----~v~~~-al~~L~n 322 (518)
.+...|+++.+++.+.++|.=++.+++-+|..|+. .+...+.+.+.|+++.|+.++...... .+..| .++..|+
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 66678999999999999888899999999999999 777899999999999999999643222 22333 3478888
Q ss_pred hhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHH-HhC-C----CHHHHHHHhc
Q 010080 323 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLI-HSS-E----ALALLLHLLS 396 (518)
Q Consensus 323 l~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~l-i~~-~----~i~~Li~lL~ 396 (518)
++...+..+.... ..++..+..++.+.++..+..|.-+++.|+.. .+..+.+ ... + ++..+.....
T Consensus 276 la~~~~~~v~~~~-------p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~ 347 (503)
T PF10508_consen 276 LARVSPQEVLELY-------PAFLERLFSMLESQDPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIK 347 (503)
T ss_pred HHhcChHHHHHHH-------HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhc
Confidence 8875433322111 24666677777888999999999999999754 4555555 333 2 3444555556
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCCCCchhHH---HHHHHHHhcCchH-HHHHhhccCCHHHHHHHHHHHHHHHccCCCC
Q 010080 397 TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ---EHLVSLVGRGCLS-GFIDLVRSADIEAARLGLQFMELVLRGMPNH 472 (518)
Q Consensus 397 ~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~---~~~~~l~~~g~i~-~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~ 472 (518)
++..++|..+.-+++++....+. ...+.+. +.+-.....+... .+.++++.+=+++...++.++..++... .+
T Consensus 348 ~~~~~lk~r~l~al~~il~~~~~--~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~-Wg 424 (503)
T PF10508_consen 348 SGSTELKLRALHALASILTSGTD--RQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP-WG 424 (503)
T ss_pred CCchHHHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH-HH
Confidence 77889999999999999654321 1111111 1111223345566 7888888888999999999999998642 11
Q ss_pred cchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080 473 EGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510 (518)
Q Consensus 473 ~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f 510 (518)
...+....|.++.+-+=....+++..++=..|+...-
T Consensus 425 -~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 425 -QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred -HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 1233334455554433244456677666566655543
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.67 E-value=5.2e-13 Score=139.62 Aligned_cols=384 Identities=20% Similarity=0.215 Sum_probs=280.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhc
Q 010080 97 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLG 176 (518)
Q Consensus 97 ~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~ 176 (518)
...++++..++.-++..+ ..+....+.+..+|+..+ .+....++.+|..+..... ......+..+.|...|.
T Consensus 16 ~~~~~~L~~l~~~~~~~~------~l~~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~~-~~~l~~~~~~~L~~gL~ 87 (503)
T PF10508_consen 16 AERLEALPELKTELSSSP------FLERLPEPVLFDCLNTSN-REQVELICDILKRLLSALS-PDSLLPQYQPFLQRGLT 87 (503)
T ss_pred cchHHHHHHHHHHHhhhh------HHHhchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhc
Confidence 455677777766554332 222333444778887554 3333457777887775432 22223367888888898
Q ss_pred CCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHH
Q 010080 177 EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD 256 (518)
Q Consensus 177 ~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~ 256 (518)
+ +++.|+..+++.|++++.++......+.+.++++.++.++.+++..+...|+.+|.+|+..+ . ..+.+...+.++
T Consensus 88 h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~-~~~~l~~~~~~~ 163 (503)
T PF10508_consen 88 H-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP--E-GLEQLFDSNLLS 163 (503)
T ss_pred C-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--h-hHHHHhCcchHH
Confidence 7 88999999999999999988888888999999999999999999999999999999999753 2 233444567789
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeec
Q 010080 257 AILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLV 336 (518)
Q Consensus 257 ~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~ 336 (518)
.|..++...++.++..++.++.+++..+++..+.+.+.|+++.++..|. .+|.-++..++.+++.++. .+...+.+.+
T Consensus 164 ~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~-~dDiLvqlnalell~~La~-~~~g~~yL~~ 241 (503)
T PF10508_consen 164 KLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD-SDDILVQLNALELLSELAE-TPHGLQYLEQ 241 (503)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc-CccHHHHHHHHHHHHHHHc-ChhHHHHHHh
Confidence 9999998888899999999999999989999999999999999999994 5777788999999999998 4455666664
Q ss_pred cCCCchhhhHHHHHHHhccCh--h---h-hHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHH
Q 010080 337 PGHGITDQVIAVLVKCLKSEH--R---V-LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 410 (518)
Q Consensus 337 ~G~~~~~~~l~~L~~lL~~~~--~---~-i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL 410 (518)
.|+++.|..++.+.. + . +.-..+...+|++...+..+.... ..++..|.+++.+.|...+.-|.-++
T Consensus 242 ------~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 242 ------QGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred ------CCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 469999999996542 2 1 223344667778775444332221 13566677777889999999999999
Q ss_pred HHhcCCCCCCCCCchhHHHHHHHH-Hhc-----CchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcc-------hhH
Q 010080 411 GNLCVSPTEGEGKPKLIQEHLVSL-VGR-----GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEG-------TKL 477 (518)
Q Consensus 411 ~nl~~~~~~~~~~~~~~~~~~~~l-~~~-----g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~-------~~~ 477 (518)
+.++... +-...| .+. .++..+.....+...+++..++.++.+|+........ ...
T Consensus 315 g~igst~-----------~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w 383 (503)
T PF10508_consen 315 GQIGSTV-----------EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESW 383 (503)
T ss_pred HHHhCCH-----------HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 9998642 222334 333 2566777777778889999999999999976543111 122
Q ss_pred HHhhc--hHH-HHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080 478 VERED--GID-AMERFQFHENEDLRNMANGLVDKYFGE 512 (518)
Q Consensus 478 ie~~g--gl~-~l~~L~~~~~~~i~~~a~~il~~~f~~ 512 (518)
++..+ ... .+..+...+=+|++-.|.+++...+..
T Consensus 384 ~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 384 YESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 33333 233 566677888899999999998876643
No 17
>PRK09687 putative lyase; Provisional
Probab=99.65 E-value=2.6e-14 Score=137.53 Aligned_cols=255 Identities=13% Similarity=0.059 Sum_probs=195.8
Q ss_pred CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHH
Q 010080 125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV 204 (518)
Q Consensus 125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~ 204 (518)
-.++.|..+|.+++ ..++..|+++|..+.... +++.+..++.+ +++.++..++|+|+.|-.....
T Consensus 23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~~---------~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGGQD---------VFRLAIELCSS-KNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCcch---------HHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCccc----
Confidence 35667778887655 446667999998876421 36677777776 7899999999999998642211
Q ss_pred HHhcCChhHHHhh-hCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC
Q 010080 205 LLSQGALPPLARM-MLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL 283 (518)
Q Consensus 205 ~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 283 (518)
...+++.|..+ +++++..++..++.+|.+++... +.+ ...+++.+...+.+++..|+..++++|.++.+
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKN-PLY------SPKIVEQSQITAFDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-ccc------chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-
Confidence 12356777777 55678999999999999997542 111 12456667788888999999999999987653
Q ss_pred CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHH
Q 010080 284 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE 363 (518)
Q Consensus 284 ~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~ 363 (518)
...++.|+.+| .++++.++..|..+||.+..++ ..+++.|+.+|.+.++.||.+
T Consensus 158 ----------~~ai~~L~~~L-~d~~~~VR~~A~~aLg~~~~~~---------------~~~~~~L~~~L~D~~~~VR~~ 211 (280)
T PRK09687 158 ----------EAAIPLLINLL-KDPNGDVRNWAAFALNSNKYDN---------------PDIREAFVAMLQDKNEEIRIE 211 (280)
T ss_pred ----------HHHHHHHHHHh-cCCCHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHhcCCChHHHHH
Confidence 23578889989 4788899999999999983322 248899999999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHH
Q 010080 364 AAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGF 443 (518)
Q Consensus 364 a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L 443 (518)
|+|+|+.+- ++ ..+|.|++.|.+++ ++..|+.+|+++- +| .++|.|
T Consensus 212 A~~aLg~~~--~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig--------~~-------------~a~p~L 257 (280)
T PRK09687 212 AIIGLALRK--DK---------RVLSVLIKELKKGT--VGDLIIEAAGELG--------DK-------------TLLPVL 257 (280)
T ss_pred HHHHHHccC--Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcC--------CH-------------hHHHHH
Confidence 999999873 32 37899999999876 6789999999983 22 268899
Q ss_pred HHhhc-cCCHHHHHHHHHHHHH
Q 010080 444 IDLVR-SADIEAARLGLQFMEL 464 (518)
Q Consensus 444 ~~lL~-~~d~~~~~~~l~~l~~ 464 (518)
..++. .+|+.++..+.++|..
T Consensus 258 ~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 258 DTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHhhCCChhHHHHHHHHHhc
Confidence 99997 7899999999888763
No 18
>PRK09687 putative lyase; Provisional
Probab=99.64 E-value=4.2e-14 Score=136.11 Aligned_cols=254 Identities=12% Similarity=0.079 Sum_probs=193.8
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
.++.|+.+|.+ ++..++..++|+|+.+-. ..+++.+..+++++++.++..++|+|+.|-... ..
T Consensus 24 ~~~~L~~~L~d-~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~--~~-- 87 (280)
T PRK09687 24 NDDELFRLLDD-HNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK--RC-- 87 (280)
T ss_pred cHHHHHHHHhC-CCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--cc--
Confidence 57788899977 789999999999998753 234677888889999999999999999995321 11
Q ss_pred hHHHhhchHHHHHHH-hccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080 247 ELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 247 ~~i~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 325 (518)
....+|.|..+ ++++++.|+..++.+|++++...... ...++..+...+ .+++..|+..+.++||++-.
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC
Confidence 13577888877 67888999999999999997533211 112344555555 46788999999999987631
Q ss_pred CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080 326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 405 (518)
Q Consensus 326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e 405 (518)
...++.|+.+|.++++.||..|+++|+.+..+++ .+++.|+.+|.+.+..||.+
T Consensus 158 -----------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~ 211 (280)
T PRK09687 158 -----------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIE 211 (280)
T ss_pred -----------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHH
Confidence 2488999999999999999999999999944443 26778999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHH
Q 010080 406 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGID 485 (518)
Q Consensus 406 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~ 485 (518)
|+|+|+.+-. + .++++|+..|.+++. ...+.++|..+ + . .-.+.
T Consensus 212 A~~aLg~~~~--------~-------------~av~~Li~~L~~~~~--~~~a~~ALg~i---g-~---------~~a~p 255 (280)
T PRK09687 212 AIIGLALRKD--------K-------------RVLSVLIKELKKGTV--GDLIIEAAGEL---G-D---------KTLLP 255 (280)
T ss_pred HHHHHHccCC--------h-------------hHHHHHHHHHcCCch--HHHHHHHHHhc---C-C---------HhHHH
Confidence 9999998622 1 278999999988774 33455555544 1 1 12466
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHh
Q 010080 486 AMERFQF-HENEDLRNMANGLVDK 508 (518)
Q Consensus 486 ~l~~L~~-~~~~~i~~~a~~il~~ 508 (518)
.|..+.. +++..+..+|.+.+.+
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHhc
Confidence 7777765 8899999999887764
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=3.1e-13 Score=126.13 Aligned_cols=305 Identities=15% Similarity=0.218 Sum_probs=232.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCC-hHHHHHHHHHHHHHhcCChHHHHHhc--CChH
Q 010080 93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSP-DEQLLEAAWCLTNIAAGKQEETKALL--PALP 169 (518)
Q Consensus 93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~-~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~ 169 (518)
+++....++++..+..+.... | .+.++.++..++.+|..... .++..-...++..-|-+...+++.++ +++|
T Consensus 118 ~~~~~~l~ksL~al~~lt~~q---p--dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQ---P--DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCC---c--chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 455666666776666643322 2 26678889999999975432 33434466777777777777788887 6888
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhhCCCh---------hhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhhcC
Q 010080 170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGE---------EFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKG 239 (518)
Q Consensus 170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~---------~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~ 239 (518)
.+...|...+...+...+.|++.-+..|+. .....+...|++..|+..++.. ++.++..++.+|..|+-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 888788776666788899999999987653 3445677778899999998854 788999999999999865
Q ss_pred CCCCchhhHHHhhchHHHHHHHhccCC-h---hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccC-CCccchh
Q 010080 240 PDPKPATELIKVDGLLDAILRHLKRAD-E---ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-NSLQLLI 314 (518)
Q Consensus 240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d-~---~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~-~~~~v~~ 314 (518)
. ..|.++ .+.|++..|++++.+.+ . +....+|..|+.|+. +++....+++.|+.+.++.++..+ .++.+..
T Consensus 273 ~--E~C~~I-~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~ 348 (461)
T KOG4199|consen 273 D--EICKSI-AESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQ 348 (461)
T ss_pred H--HHHHHH-HHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHH
Confidence 3 456654 47999999999998633 3 456778888888885 667888899999999999887644 5777888
Q ss_pred hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc-cC-hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHH
Q 010080 315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL 392 (518)
Q Consensus 315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~~-~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li 392 (518)
.++.+++-++-..++....+++.| +-...++.|. |+ ...+++.|||.|.|++..+.++...++.. ++..|+
T Consensus 349 ~~~a~i~~l~LR~pdhsa~~ie~G------~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li 421 (461)
T KOG4199|consen 349 EVMAIISILCLRSPDHSAKAIEAG------AADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLI 421 (461)
T ss_pred HHHHHHHHHHhcCcchHHHHHhcc------hHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHH
Confidence 999999999988888888888765 6566666664 44 35899999999999999998999888887 467777
Q ss_pred HHhcCCChhHHHHHHHHHHHh
Q 010080 393 HLLSTSPFDIKKEVAYVLGNL 413 (518)
Q Consensus 393 ~lL~~~~~~v~~eA~~aL~nl 413 (518)
..-+...+.+...|--+|..+
T Consensus 422 ~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 422 RTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHhcCccHHHHHHHHHHhc
Confidence 777776667777777777776
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.56 E-value=5.2e-13 Score=128.39 Aligned_cols=353 Identities=14% Similarity=0.082 Sum_probs=245.0
Q ss_pred CHHHHHHHHHHHHHHhcCC--CCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHH
Q 010080 95 AMQKRVNALRELRRLLSRF--EFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPL 170 (518)
Q Consensus 95 ~~~~~~~a~~~lr~lls~~--~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~ 170 (518)
+......+..++.+.-..+ ++.....-|.++.+..|.+..++++ .++..+..++|+|+|..+.+.+.++. |+-..
T Consensus 55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 3444555555555532111 1111122356777788888777764 45556799999999999999999998 67666
Q ss_pred HHHhhcCC------CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC--CChhHHHHHHHHHHHhhcCCCC
Q 010080 171 LIAHLGEK------SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDP 242 (518)
Q Consensus 171 Lv~lL~~~------~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~ 242 (518)
++.+|... .+.+...-+...|.|..-++.+.|..+++.|+++.|...+.- .+..+.+...-.+.||...-..
T Consensus 134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 77776541 234666777788999999999999999999999999998763 3444444444433443321000
Q ss_pred CchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccch-------h
Q 010080 243 KPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL-------I 314 (518)
Q Consensus 243 ~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~-------~ 314 (518)
...++.......-.+++++. ...+++...++-.|++.++++. ..-.+.+.|.+..+++++.+.++..-. .
T Consensus 214 -~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~-Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k 291 (604)
T KOG4500|consen 214 -MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL-VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK 291 (604)
T ss_pred -hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc-eeeehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence 00112223455666777776 3456777778888999998544 334456789999999988643332222 2
Q ss_pred hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080 315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL 394 (518)
Q Consensus 315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l 394 (518)
.++-.+.-+.+|++. .+.+... ..++..+..++.+.+......+..+|+|++... ..+..+++.+++..|+.+
T Consensus 292 ~~~el~vllltGDeS-Mq~L~~~-----p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~ 364 (604)
T KOG4500|consen 292 RIAELDVLLLTGDES-MQKLHAD-----PQFLDFLESWFRSDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISC 364 (604)
T ss_pred hhhhHhhhhhcCchH-HHHHhcC-----cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHH
Confidence 334444455566643 2333322 248899999999999999999999999998765 677889999999999999
Q ss_pred hc-----CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080 395 LS-----TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 395 L~-----~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~ 468 (518)
|. +++..++..++.||.|+...- .....++..|+...+.-+|+...|.++..-+..+..+..+
T Consensus 365 l~~~~~vdgnV~~qhA~lsALRnl~IPv-----------~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 365 LMQEKDVDGNVERQHACLSALRNLMIPV-----------SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred HHHhcCCCccchhHHHHHHHHHhccccC-----------CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence 83 367789999999999998731 1235778999999999999999999999888888877654
No 21
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.52 E-value=2.1e-12 Score=133.81 Aligned_cols=306 Identities=19% Similarity=0.206 Sum_probs=223.3
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
-+|.-+.+|.+ .++.++-.|+.-+..+|....+.+..+.+.|+|+.|+.++.+.+.+++++|+|+|.||..++.....+
T Consensus 234 ~lpe~i~mL~~-q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMS-QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhc-cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 67888999987 78999999999999999999999999999999999999999999999999999999999886543344
Q ss_pred hHHHhhchHHHHHHHhcc-CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc-C--------C----Cccc
Q 010080 247 ELIKVDGLLDAILRHLKR-ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-S--------N----SLQL 312 (518)
Q Consensus 247 ~~i~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-~--------~----~~~v 312 (518)
-.|...+++|.++++|.. .|.++...+..+|.||+.. +..+..+-...+..|.+.+.. + + +..+
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 455678999999999996 7899999999999999975 455555555556666654431 1 1 2467
Q ss_pred hhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc------ChhhhHHHHHHHHHHhccCCH-----HHHH-
Q 010080 313 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS------EHRVLKKEAAWVLSNIAAGSV-----EHKQ- 380 (518)
Q Consensus 313 ~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~------~~~~i~~~a~~~Lsnl~~~~~-----~~~~- 380 (518)
...+..||.|++....+..+.+-++ .|++..|+..+++ .+.+-.+.+.-++.|+.-.-. ...+
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c-----~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~ 465 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMREC-----DGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQV 465 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhc-----cchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhH
Confidence 7889999999998776666666665 4788888887763 234556677777888753211 0000
Q ss_pred -------------------------H----------------------HHhCCCHHHHHHHh-cCCChhHHHHHHHHHHH
Q 010080 381 -------------------------L----------------------IHSSEALALLLHLL-STSPFDIKKEVAYVLGN 412 (518)
Q Consensus 381 -------------------------~----------------------li~~~~i~~Li~lL-~~~~~~v~~eA~~aL~n 412 (518)
. +....++..-..+| .+.+..+.+.++.+|-|
T Consensus 466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN 545 (717)
T KOG1048|consen 466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN 545 (717)
T ss_pred hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence 0 00011233323334 45667899999999999
Q ss_pred hcCCCCCCCCCchhHHHHHH-HH-HhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHH
Q 010080 413 LCVSPTEGEGKPKLIQEHLV-SL-VGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF 490 (518)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~-~l-~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L 490 (518)
++.+. +.+ ..++. .+ .+..++++|+++|..+|..++..+..+|.|+-....+ ...+ .-+++..|.+.
T Consensus 546 ltA~~----~~~---~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn---k~li-gk~a~~~lv~~ 614 (717)
T KOG1048|consen 546 LTAGL----WTW---SEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN---KELI-GKYAIPDLVRC 614 (717)
T ss_pred hhccC----Ccc---hhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh---hhhh-hcchHHHHHHh
Confidence 98752 221 13333 33 5789999999999999999999999999999765332 2222 23455555444
Q ss_pred h
Q 010080 491 Q 491 (518)
Q Consensus 491 ~ 491 (518)
.
T Consensus 615 L 615 (717)
T KOG1048|consen 615 L 615 (717)
T ss_pred C
Confidence 3
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.5e-11 Score=118.36 Aligned_cols=350 Identities=14% Similarity=0.158 Sum_probs=246.5
Q ss_pred HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH-HHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC
Q 010080 119 ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE-ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE 197 (518)
Q Consensus 119 ~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~-~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d 197 (518)
..+.+.+++..||..|+.++. ++..-....|..++--... ....-.|.|..|++++.. .+++++...+..|-|++.|
T Consensus 298 lKMrrkniV~mLVKaLdr~n~-~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~-~h~dL~~~tl~LlfNlSFD 375 (791)
T KOG1222|consen 298 LKMRRKNIVAMLVKALDRSNS-SLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI-QHPDLRKATLMLLFNLSFD 375 (791)
T ss_pred HHHHHHhHHHHHHHHHcccch-HHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC-CCHHHHHHHHHHhhhcccc
Confidence 356778999999999997663 4445566667777633222 222223799999999987 7899999999999999997
Q ss_pred ChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHH
Q 010080 198 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWV 276 (518)
Q Consensus 198 ~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~ 276 (518)
+ ..|..+++.|.+|.|..++.++... ..|+..++.++-.+. ...++.-..++|.+.+.+- ..+.+|-......
T Consensus 376 ~-glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~---~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ 449 (791)
T KOG1222|consen 376 S-GLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDD---AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIAL 449 (791)
T ss_pred c-cccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcH---HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHH
Confidence 6 7888999999999999999876422 234444555553322 2335556789999887655 4455665555544
Q ss_pred HHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc-
Q 010080 277 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS- 355 (518)
Q Consensus 277 L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~- 355 (518)
.-||+- +..+.+.+++...+..|++.-.++.++ -....+.||+.+.......+++ .+.-|..++..
T Consensus 450 ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~Fid--------yvgdLa~i~~nd 516 (791)
T KOG1222|consen 450 CINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFID--------YVGDLAGIAKND 516 (791)
T ss_pred HHHHHh-ccccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHH--------HHHHHHHHhhcC
Confidence 457776 445678888877888887765434332 2346677887766543334443 45556666654
Q ss_pred ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC--ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q 010080 356 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS 433 (518)
Q Consensus 356 ~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~ 433 (518)
.+.....++..+++|++...-...+.+-+.+++|.+-..|+-+ ..++.-+.+.+++.++.. ......
T Consensus 517 ~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-----------~~cA~L 585 (791)
T KOG1222|consen 517 NSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-----------LDCARL 585 (791)
T ss_pred chHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-----------hHHHHH
Confidence 4457888999999999987767777788899999999999653 456777778787777653 233455
Q ss_pred HHhcCchHHHHHhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHH
Q 010080 434 LVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA 502 (518)
Q Consensus 434 l~~~g~i~~L~~lL~~--~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a 502 (518)
+...|+|+.|+++|+. .|.+++.+.+-+...++++.. ....++.+...-..+.+|.++.|.+|++-+
T Consensus 586 la~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~--tr~~miket~~~AylIDLMHDkN~eiRkVC 654 (791)
T KOG1222|consen 586 LAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHEL--TRRLMIKETALGAYLIDLMHDKNAEIRKVC 654 (791)
T ss_pred hCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH--HHHHHHhhccchHHHHHHHhcccHHHHHHH
Confidence 6688999999999996 567777777777777777521 223456665555678999999999998754
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.49 E-value=6.4e-12 Score=120.98 Aligned_cols=320 Identities=16% Similarity=0.179 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHhcCCh---HHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHh
Q 010080 142 QLLEAAWCLTNIAAGKQ---EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR 216 (518)
Q Consensus 142 ~~~eA~~~L~nia~~~~---~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ 216 (518)
+...++.|+..++.... .-+...+ +++..|.+..++ ++.++-+|+.++|||||.|+.+.|..+.+.|+-..++.
T Consensus 58 v~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid 136 (604)
T KOG4500|consen 58 VYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVID 136 (604)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHh
Confidence 44567778887773321 1122323 577888888877 68999999999999999999999999999999888888
Q ss_pred hhCC---C----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--cCChhHHHHHHHHHHHhhcCCchh
Q 010080 217 MMLP---N----KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVA 287 (518)
Q Consensus 217 ll~~---~----~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~ 287 (518)
+|++ . +.+....+...|+|-.-+. ...+..+...|++|.|..++. ..+.+........+.+|..--.+.
T Consensus 137 ~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~--~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~ 214 (604)
T KOG4500|consen 137 VLKPYCSKDNPANEEYSAVAFGVLHNYILDS--RELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEM 214 (604)
T ss_pred hhccccccCCccHHHHHHHHHHHHHHhhCCc--HHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHh
Confidence 8873 1 3477778888888876543 233334457899999998876 334444444444433333211111
Q ss_pred -hhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc-Ch-------h
Q 010080 288 -TSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EH-------R 358 (518)
Q Consensus 288 -~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-~~-------~ 358 (518)
.....+..+.-.++++|.....+.+...++.++...+..+... -.+. +.|.+..+..++.. +. .
T Consensus 215 ~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la------~~gl~e~~~~lv~~~k~~t~k~d~~ 287 (604)
T KOG4500|consen 215 LYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLA------QNGLLEDSIDLVRNMKDFTKKTDML 287 (604)
T ss_pred hhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehh------hcchHHHHHHHHHhcccccchHHHH
Confidence 2233456666777888866666777777788888777555333 2333 34688888888865 21 2
Q ss_pred hhHHHHHHHHHHhccCCHHHHHHHHhCC-CHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 010080 359 VLKKEAAWVLSNIAAGSVEHKQLIHSSE-ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR 437 (518)
Q Consensus 359 ~i~~~a~~~Lsnl~~~~~~~~~~li~~~-~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~ 437 (518)
..-+.+|-...-|..|. +-.+.+...+ ++..+...+.+.|.+....++.+|+|++.. +.++.+++++
T Consensus 288 ~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-----------D~~ci~~v~~ 355 (604)
T KOG4500|consen 288 NLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-----------DDICIQLVQK 355 (604)
T ss_pred HHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-----------chHHHHHHHH
Confidence 34455555555555555 5567777665 899999999999999999999999999875 4788999999
Q ss_pred CchHHHHHhhcc-----CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHH
Q 010080 438 GCLSGFIDLVRS-----ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA 486 (518)
Q Consensus 438 g~i~~L~~lL~~-----~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~ 486 (518)
|.+..|+++|.. ++.+.+..++.+|.+++--.+ +...+-..|..+.
T Consensus 356 ~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~---nka~~~~aGvtea 406 (604)
T KOG4500|consen 356 DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS---NKAHFAPAGVTEA 406 (604)
T ss_pred HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC---chhhccccchHHH
Confidence 999999999875 567889999999999974222 2333444454444
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.49 E-value=7.1e-13 Score=111.35 Aligned_cols=117 Identities=31% Similarity=0.538 Sum_probs=106.6
Q ss_pred HHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC
Q 010080 120 TALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE 197 (518)
Q Consensus 120 ~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d 197 (518)
.+++.|++|.|+++|..++ ...+..|+++|.+++.+.++....++ +++|.++.+|.+ +++.++..|+|+|+|++.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccC
Confidence 4678999999999998765 56667899999999999888877777 799999999987 7899999999999999998
Q ss_pred ChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080 198 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 238 (518)
Q Consensus 198 ~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 238 (518)
.+..+..+...|+++.|+.++...+..+++.++|+|.|||.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 88889999999999999999999999999999999999983
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.49 E-value=3.2e-12 Score=120.41 Aligned_cols=227 Identities=18% Similarity=0.191 Sum_probs=179.3
Q ss_pred hhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCc
Q 010080 251 VDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS 329 (518)
Q Consensus 251 ~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~ 329 (518)
..+-++.|+.+|. +.|+.++..+++++++.+. .+.....+.+.|+++.+..+| ..+++.++..|+.++.|++...+.
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChhh
Confidence 5678899999998 5689999999999999876 567788888999999999999 578999999999999999877655
Q ss_pred ccceeeccCCCchhhhHHHHHHHh-cc-ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHH
Q 010080 330 TISDVLVPGHGITDQVIAVLVKCL-KS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA 407 (518)
Q Consensus 330 ~~~~~i~~G~~~~~~~l~~L~~lL-~~-~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~ 407 (518)
+.+ +. ..++.+.... .+ -+..++..+..+|.|++..+ +....+. +.+|.++.+|.+++..+|..++
T Consensus 88 ~~~--Ik-------~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G~~~~k~~vL 155 (254)
T PF04826_consen 88 QEQ--IK-------MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSGSEKTKVQVL 155 (254)
T ss_pred HHH--HH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcCChHHHHHHH
Confidence 432 22 2455555543 33 36689999999999998754 3333333 4799999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC-CHHHHHHHHHHHHHHHccCCCC-------cc-----
Q 010080 408 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRGMPNH-------EG----- 474 (518)
Q Consensus 408 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-d~~~~~~~l~~l~~il~~~~~~-------~~----- 474 (518)
++|.|++.+ ....+.|+..++++.|+.+++.. +.++...++..++||-++.... .+
T Consensus 156 k~L~nLS~n-----------p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L 224 (254)
T PF04826_consen 156 KVLVNLSEN-----------PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSL 224 (254)
T ss_pred HHHHHhccC-----------HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhH
Confidence 999999875 25678999999999999999986 5788899999999997654332 01
Q ss_pred hhHHHhhc-hHHHHHHHhcCCCHHHHHHH
Q 010080 475 TKLVERED-GIDAMERFQFHENEDLRNMA 502 (518)
Q Consensus 475 ~~~ie~~g-gl~~l~~L~~~~~~~i~~~a 502 (518)
..++.+.+ .-++|..|..|+++||+++.
T Consensus 225 ~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 225 FSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 13444444 45578889999999999874
No 26
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.48 E-value=2.6e-11 Score=122.84 Aligned_cols=404 Identities=14% Similarity=0.089 Sum_probs=263.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCChHHHHHhc--CChH
Q 010080 93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGKQEETKALL--PALP 169 (518)
Q Consensus 93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~-~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~ 169 (518)
..|++..+.|+..+.+++...+ ++...+++.|.+|.|+.+++..+ ..+.+.+.+-++...+.+..+....++ ..+|
T Consensus 20 ~~dpe~lvrai~~~kN~vig~~-~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll 98 (678)
T KOG1293|consen 20 HLDPEQLVRAIYMSKNLVIGFT-DNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL 98 (678)
T ss_pred cCCHHHHHHHHHHhcchhhcCC-CccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence 6788899999999999776654 44456899999999999998543 344555566666667777777777777 5899
Q ss_pred HHHHhhcCCCC-HHHHHHHHHHHHhhhCCChhh--HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 170 LLIAHLGEKSS-SPVAEQCAWALGNVAGEGEEF--RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 170 ~Lv~lL~~~~~-~~v~~~a~~~L~nla~d~~~~--r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
.|+.+|.+ ++ ..+.+.++.++.+|-.-++.. ........+++.+..++..+.....+.-+.-.+++|..+.. .
T Consensus 99 ~Ll~LLs~-sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~h---q 174 (678)
T KOG1293|consen 99 KLLQLLSE-SDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDH---Q 174 (678)
T ss_pred HHHHHhcC-cchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchh---h
Confidence 99999988 55 899999999999998755332 22222334455555554434445555556666667654322 2
Q ss_pred hHHHhhchHHHHHHHhccCChhHHHHHHHHHH---HhhcCCchhhh----HHHhcCchHH-HHHHHccCCCccchhhhhh
Q 010080 247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVV---YLSALSNVATS----LLVKSGVLQL-LVERLATSNSLQLLIPVLR 318 (518)
Q Consensus 247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~---~L~~~~~~~~~----~~~~~g~~~~-Lv~lL~~~~~~~v~~~al~ 318 (518)
-+...+++.+.+.-++.+.....+..++.+++ .+..+++.... ...+.|+.++ .+..|...++...+..++.
T Consensus 175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~ 254 (678)
T KOG1293|consen 175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE 254 (678)
T ss_pred heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence 24445677777777777777788999999999 66665554432 3345677664 3444445666666666677
Q ss_pred hhhhhhcCCCcc-----cceeeccCC----------------C------------------------chhhhHHHHHHH-
Q 010080 319 SLGNLVAGDSST-----ISDVLVPGH----------------G------------------------ITDQVIAVLVKC- 352 (518)
Q Consensus 319 ~L~nl~~~~~~~-----~~~~i~~G~----------------~------------------------~~~~~l~~L~~l- 352 (518)
++-++..++... .....+.|. . .+...++.+..+
T Consensus 255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ell 334 (678)
T KOG1293|consen 255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELL 334 (678)
T ss_pred HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHH
Confidence 766665443100 000111110 0 000011111111
Q ss_pred ---------------------------------------------------hccChhhhHHHHHHHHHHhccCCHHHHHH
Q 010080 353 ---------------------------------------------------LKSEHRVLKKEAAWVLSNIAAGSVEHKQL 381 (518)
Q Consensus 353 ---------------------------------------------------L~~~~~~i~~~a~~~Lsnl~~~~~~~~~~ 381 (518)
..+.+...+..||.++-+++..-......
T Consensus 335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg 414 (678)
T KOG1293|consen 335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG 414 (678)
T ss_pred HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11122334444444444443322222222
Q ss_pred HHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHH
Q 010080 382 IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQF 461 (518)
Q Consensus 382 li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~ 461 (518)
+-..++..+|++++..++..|+..+..+|+|++..-+ .....++..|+|..+.+++..+|+.+...++++
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs----------~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~ 484 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS----------NLKSKFLRNNGIDILESMLTDPDFNSRANSLWV 484 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc----------cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence 3345789999999999999999999999999998531 234788999999999999999999999999999
Q ss_pred HHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080 462 MELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 512 (518)
Q Consensus 462 l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~ 512 (518)
|++++-.+.+. .....-.--+-..|..+.++++.+|++++..++.++-.+
T Consensus 485 Lr~l~f~~de~-~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 485 LRHLMFNCDEE-EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHhcchHH-HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 99998765432 111111112345677888999999999999999877644
No 27
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.48 E-value=3.9e-12 Score=119.78 Aligned_cols=196 Identities=20% Similarity=0.187 Sum_probs=160.0
Q ss_pred HHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC
Q 010080 121 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 198 (518)
Q Consensus 121 ~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~ 198 (518)
+++++-+..|+.+|+...++..+..|..+++|.+..+ ...+.+. |+++.+..+|.+ +++.+++.|+|+|.|++. +
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~-~ 84 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSV-N 84 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCC-C
Confidence 4677888999999997776778788999999987644 3344443 899999999988 799999999999999998 4
Q ss_pred hhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHH
Q 010080 199 EEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWV 276 (518)
Q Consensus 199 ~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~ 276 (518)
.+++..+-. .++.++..+.+. +..++..++.+|.||+...+ ...++ .+.+|.++++|..++..++..++++
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~---~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND---YHHML--ANYIPDLLSLLSSGSEKTKVQVLKV 157 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc---hhhhH--HhhHHHHHHHHHcCChHHHHHHHHH
Confidence 566666543 477777755433 78999999999999986532 22343 4789999999999999999999999
Q ss_pred HHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCC
Q 010080 277 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD 327 (518)
Q Consensus 277 L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~ 327 (518)
|.+|+. ++.....++..+++..++.++..+.+.+++..++..+.||..+-
T Consensus 158 L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 158 LVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 999998 56678888899999999999976667888999999999997653
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.47 E-value=1.8e-11 Score=136.99 Aligned_cols=275 Identities=18% Similarity=0.164 Sum_probs=211.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~ 161 (518)
..+..++..+.++|+..+..|+..|.++- ..+++|.|+..|..++ ..+...|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc----
Confidence 34445555667999999999999998842 1346889999996544 566677889998885321
Q ss_pred HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080 162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 241 (518)
...+.|...|.+ +++.|+..|+.+|+.+.... ...|+..|.+++..++..++++|..+- .
T Consensus 684 ----~~~~~L~~~L~~-~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~--~- 743 (897)
T PRK13800 684 ----PPAPALRDHLGS-PDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVD--D- 743 (897)
T ss_pred ----CchHHHHHHhcC-CCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhccc--C-
Confidence 124577788877 78999999999999875322 345677888999999999999998752 1
Q ss_pred CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 321 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~ 321 (518)
.+.|..++.+++++|+..++.+|..+.... ...++.|..++ +++++.++..|+.+|+
T Consensus 744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll-~D~d~~VR~aA~~aLg 800 (897)
T PRK13800 744 -------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALT-GDPDPLVRAAALAALA 800 (897)
T ss_pred -------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHh-cCCCHHHHHHHHHHHH
Confidence 123567889999999999999999987532 23367788888 5778999999999999
Q ss_pred hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChh
Q 010080 322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD 401 (518)
Q Consensus 322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~ 401 (518)
++-... .+.+.+...|.++++.||..|+++|+.+... ..++.|+.+|++.+..
T Consensus 801 ~~g~~~----------------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 801 ELGCPP----------------DDVAAATAALRASAWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLD 853 (897)
T ss_pred hcCCcc----------------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHH
Confidence 874221 2456688889999999999999999987421 2568999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHH
Q 010080 402 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME 463 (518)
Q Consensus 402 v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~ 463 (518)
||++|+++|..+. +.| ...+.|...|++.|+.+...+.++|.
T Consensus 854 VR~~A~~aL~~~~-------~~~-------------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 854 VRKAAVLALTRWP-------GDP-------------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHhccC-------CCH-------------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999999999872 111 13567888899999999999988875
No 29
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.41 E-value=3.1e-12 Score=107.43 Aligned_cols=113 Identities=25% Similarity=0.482 Sum_probs=102.5
Q ss_pred CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
|++|.|+.+|.+ ++..+++.++|+|+|++.++++.+..+++.|++|.++.++.++++.++..++|+|+||+.+. ...
T Consensus 7 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~--~~~ 83 (120)
T cd00020 7 GGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP--EDN 83 (120)
T ss_pred CChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc--HHH
Confidence 689999999987 67999999999999999988999999999999999999999999999999999999999764 233
Q ss_pred hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhh
Q 010080 246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 281 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 281 (518)
.+.+...|+++.+++++...+.+++..++|+|.+|+
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 444556789999999999999999999999999987
No 30
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.40 E-value=3e-11 Score=130.57 Aligned_cols=316 Identities=19% Similarity=0.171 Sum_probs=224.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHH----------HhcC------CCChHHHH-HHHHHHHHHhc
Q 010080 93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQ----------CLAF------GSPDEQLL-EAAWCLTNIAA 155 (518)
Q Consensus 93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~----------~L~~------~~~~~~~~-eA~~~L~nia~ 155 (518)
.++.+.+..|-.+|.+++-.+..... .--+..+++.|=+ .|.. +.+..-+. .|+..|..++.
T Consensus 249 ~~~kear~~A~aALHNIVhSqPD~kr-~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF 327 (2195)
T KOG2122|consen 249 DEDKEARKRASAALHNIVHSQPDEKR-GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF 327 (2195)
T ss_pred hhhHHHHHHHHHHHHHHhhcCcchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc
Confidence 34556778888888887655433211 1112223333321 1211 11222334 57777777776
Q ss_pred CChHHHHHhc--CChHHHHHhhcC-----------CCCHHHHHHHHHHHHhhhCCChhhHHH-HHhcCChhHHHhhhCCC
Q 010080 156 GKQEETKALL--PALPLLIAHLGE-----------KSSSPVAEQCAWALGNVAGEGEEFRNV-LLSQGALPPLARMMLPN 221 (518)
Q Consensus 156 ~~~~~~~~v~--~~v~~Lv~lL~~-----------~~~~~v~~~a~~~L~nla~d~~~~r~~-~~~~g~i~~L~~ll~~~ 221 (518)
+ .+++.++- |++..+-.||.- +.+..++..+..+|.||.+....++.. +-..|+|..++..|.+.
T Consensus 328 D-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~ 406 (2195)
T KOG2122|consen 328 D-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA 406 (2195)
T ss_pred c-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC
Confidence 5 45666664 654444444321 123578999999999999765555544 44679999999999998
Q ss_pred ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH-hccCChhHHHHHHHHHHHhhcCCchhhhHHHh-cCchHH
Q 010080 222 KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLVK-SGVLQL 299 (518)
Q Consensus 222 ~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~~~~ 299 (518)
..++....+..|.||.-.-+ ....+++...|-+-.|+.. ++...+..+..++.+|.||+.+..++...++. .|.+..
T Consensus 407 peeL~QV~AsvLRNLSWRAD-~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaF 485 (2195)
T KOG2122|consen 407 PEELLQVYASVLRNLSWRAD-SNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAF 485 (2195)
T ss_pred hHHHHHHHHHHHHhcccccc-ccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHH
Confidence 88999999999999996533 2344566667777777765 44555567788888888998877777777776 589999
Q ss_pred HHHHHcc---CCCccchhhhhhhhhhhhcC---CCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080 300 LVERLAT---SNSLQLLIPVLRSLGNLVAG---DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 373 (518)
Q Consensus 300 Lv~lL~~---~~~~~v~~~al~~L~nl~~~---~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~ 373 (518)
||.+|.- ++...++..+-.+|.|++.. .....|.+. .++.|..|++.|.+..-.|..++|.+|.||.+
T Consensus 486 LVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR------~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA 559 (2195)
T KOG2122|consen 486 LVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILR------RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 559 (2195)
T ss_pred HHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHH------HhhHHHHHHHHhhhcceEEeecchhhhhhhhc
Confidence 9999952 23445666776777776543 333333333 46899999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080 374 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 417 (518)
Q Consensus 374 ~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 417 (518)
.+++..+.|.+.|.++.|.+++.+....+-.-++.+|.|+..+.
T Consensus 560 R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 560 RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999999899999999999998753
No 31
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=8e-10 Score=118.95 Aligned_cols=392 Identities=14% Similarity=0.106 Sum_probs=243.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHH
Q 010080 92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLL 171 (518)
Q Consensus 92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~L 171 (518)
.+.|++.+--|...+||++.+. -+.+..-.+..+-..|+..+.+...+.+...-+.++..|+++.-.. ..=+.++.|
T Consensus 47 ~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e--~WPell~~L 123 (1075)
T KOG2171|consen 47 TSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE--KWPELLQFL 123 (1075)
T ss_pred cCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc--chHHHHHHH
Confidence 5788998888999999988763 2333344455666677777776665666666888888888654322 222467777
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhhCCChh-hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC-CCchhhHH
Q 010080 172 IAHLGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD-PKPATELI 249 (518)
Q Consensus 172 v~lL~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~i 249 (518)
++...+ +++..||.|+.+|..+...... .+..+. .+.+.+.+.+..++..++..++.++..++...+ .+...+.
T Consensus 124 ~q~~~S-~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~- 199 (1075)
T KOG2171|consen 124 FQSTKS-PNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDK- 199 (1075)
T ss_pred HHHhcC-CCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHH-
Confidence 777777 8999999999999998764221 111111 123344455555555599999999988775431 2222222
Q ss_pred HhhchHHHHHHHh----ccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc-cCCCccchhhhhhhhhhh-
Q 010080 250 KVDGLLDAILRHL----KRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA-TSNSLQLLIPVLRSLGNL- 323 (518)
Q Consensus 250 ~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~-~~~~~~v~~~al~~L~nl- 323 (518)
-...+|.++..+ ..+|.+....++-+|-.++...+..+.-.++ .+++....... +.-+..++..|+.+|..+
T Consensus 200 -~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~ 277 (1075)
T KOG2171|consen 200 -FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLS 277 (1075)
T ss_pred -HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 235667666554 4666777777777777777654433321111 11111111111 001112222222222211
Q ss_pred -------------------------hcCCCc-------ccc------------eee-----cc-CCCchhhhHHHHHHHh
Q 010080 324 -------------------------VAGDSS-------TIS------------DVL-----VP-GHGITDQVIAVLVKCL 353 (518)
Q Consensus 324 -------------------------~~~~~~-------~~~------------~~i-----~~-G~~~~~~~l~~L~~lL 353 (518)
+...++ .++ ..+ .. |+.+-.-+++.+-.++
T Consensus 278 e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l 357 (1075)
T KOG2171|consen 278 EYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAML 357 (1075)
T ss_pred HhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHh
Confidence 111111 000 000 00 1112234556667778
Q ss_pred ccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q 010080 354 KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVS 433 (518)
Q Consensus 354 ~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~ 433 (518)
.+.++.-|+.|..+||-++.|+.+++...++. +++..++.|+++++.||..|+.+|+-++.+-. ..++.
T Consensus 358 ~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl~----------p~iqk 426 (1075)
T KOG2171|consen 358 QSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ----------PEIQK 426 (1075)
T ss_pred cCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc----------HHHHH
Confidence 89999999999999999999999888886664 89999999999999999999999999987531 23444
Q ss_pred HHhcCchHHHHHhhccCC-HHHHHHHHHHHHHHHccCCCCcchhHHHhhchHH-HHHHHhcCCCHHHHHHHHHH
Q 010080 434 LVGRGCLSGFIDLVRSAD-IEAARLGLQFMELVLRGMPNHEGTKLVEREDGID-AMERFQFHENEDLRNMANGL 505 (518)
Q Consensus 434 l~~~g~i~~L~~lL~~~d-~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~-~l~~L~~~~~~~i~~~a~~i 505 (518)
-...-+++.|+..+.+.. +++...+..++-+.++.+........+ -+-++ ++..|.+++.+.+++.+..-
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvta 498 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVTA 498 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 455567889999998854 688888889999998876542111111 12234 56677888888888876433
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.6e-09 Score=116.69 Aligned_cols=359 Identities=15% Similarity=0.104 Sum_probs=239.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC---hHHHHH
Q 010080 87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK---QEETKA 163 (518)
Q Consensus 87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~---~~~~~~ 163 (518)
+++..+|+|+..+-.|+..|..+...-.+.....+ ..+.+.|.+.+..++.+ ++..|+.+++.++.-. ....+.
T Consensus 123 L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~ 199 (1075)
T KOG2171|consen 123 LFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDK 199 (1075)
T ss_pred HHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHH
Confidence 44577899999999999999886654433221111 23566677777766655 6677999999888433 444555
Q ss_pred hcCChHHHHHhhcC---CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhc
Q 010080 164 LLPALPLLIAHLGE---KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIK 238 (518)
Q Consensus 164 v~~~v~~Lv~lL~~---~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~ 238 (518)
....+|.++..+.. ..+.+....+..+|.-++...+.+-...+. .+|...+.+..+. +..++..|.-++..+++
T Consensus 200 ~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e 278 (1075)
T KOG2171|consen 200 FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSE 278 (1075)
T ss_pred HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 55688887777653 245666778888888888755544332222 2455555666554 67888888888888887
Q ss_pred CCCCCchhh-HHHhhchHHHHHHHhccC--C--------------hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHH
Q 010080 239 GPDPKPATE-LIKVDGLLDAILRHLKRA--D--------------EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLV 301 (518)
Q Consensus 239 ~~~~~~~~~-~i~~~~~l~~L~~lL~~~--d--------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv 301 (518)
. .|.-++. .-.....++.++.++... | +.--..+..+|-.++.+-+.. .+ -.-+++.+-
T Consensus 279 ~-Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v-~p~~~~~l~ 354 (1075)
T KOG2171|consen 279 Y-APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QV-LPPLFEALE 354 (1075)
T ss_pred h-hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--he-hHHHHHHHH
Confidence 6 2221111 002346677777776521 1 012344555666666532111 00 112234444
Q ss_pred HHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHH
Q 010080 302 ERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL 381 (518)
Q Consensus 302 ~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~ 381 (518)
.+| .+.+..-+..++.+|+.++.|..+.....++ .+++.+++.|.+++|.||..||.+++.++..-...++.
T Consensus 355 ~~l-~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-------~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 355 AML-QSTEWKERHAALLALSVIAEGCSDVMIGNLP-------KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHh-cCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-------HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 555 5889999999999999999998877666554 68899999999999999999999999999987777777
Q ss_pred HHhCCCHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchH-HHHHhhccCCHHHHHHHH
Q 010080 382 IHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS-GFIDLVRSADIEAARLGL 459 (518)
Q Consensus 382 li~~~~i~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~-~L~~lL~~~d~~~~~~~l 459 (518)
-...-++|.|+..+.+ .+++|+..|+-++-|++.... +..+..+... ++. .|.-++.++.+.++..+.
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-----~~~l~pYLd~-----lm~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-----KSILEPYLDG-----LMEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-----HHHHHHHHHH-----HHHHHHHHHhcCCchhHHHHHH
Confidence 7677788899999966 567999999999999977532 1111122222 334 444566677788999999
Q ss_pred HHHHHHHccCCC
Q 010080 460 QFMELVLRGMPN 471 (518)
Q Consensus 460 ~~l~~il~~~~~ 471 (518)
.+|..+...+++
T Consensus 497 taIasvA~AA~~ 508 (1075)
T KOG2171|consen 497 TAIASVADAAQE 508 (1075)
T ss_pred HHHHHHHHHHhh
Confidence 999999876543
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.36 E-value=3.6e-10 Score=126.64 Aligned_cols=277 Identities=16% Similarity=0.170 Sum_probs=212.9
Q ss_pred HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080 123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 202 (518)
Q Consensus 123 ~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 202 (518)
....++.|+++|.+++ +.++..|+.+|..+... .++|.|+..|.+ ++..|+..|+.+|+.+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~~---------~~~~~L~~aL~D-~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTPP---------GFGPALVAALGD-GAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcch---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccC---
Confidence 4567788999997554 66777788888877531 257889999976 789999999999998853211
Q ss_pred HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
..+.|...|+++++.++..++.+|..+-.+ -.+.|+..|.++|+.++..++++|..+-.
T Consensus 685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~--------------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAG--------------DAALFAAALGDPDHRVRIEAVRALVSVDD 743 (897)
T ss_pred -------chHHHHHHhcCCCHHHHHHHHHHHHhhccC--------------CHHHHHHHhcCCCHHHHHHHHHHHhcccC
Confidence 235677888888999999999988887421 12346678899999999999999987632
Q ss_pred CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080 283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 362 (518)
Q Consensus 283 ~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~ 362 (518)
.+.|..++ .+++..++..+..+|+.+.... ...++.|..++.++++.+|.
T Consensus 744 --------------~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~---------------~~~~~~L~~ll~D~d~~VR~ 793 (897)
T PRK13800 744 --------------VESVAGAA-TDENREVRIAVAKGLATLGAGG---------------APAGDAVRALTGDPDPLVRA 793 (897)
T ss_pred --------------cHHHHHHh-cCCCHHHHHHHHHHHHHhcccc---------------chhHHHHHHHhcCCCHHHHH
Confidence 13355666 5889999999999999885432 12578899999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHH
Q 010080 363 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG 442 (518)
Q Consensus 363 ~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~ 442 (518)
.|+.+|+++.... .+++.++..|.+.++.||..|+++|..+... ..++.
T Consensus 794 aA~~aLg~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~---------------------~a~~~ 842 (897)
T PRK13800 794 AALAALAELGCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD---------------------VAVPA 842 (897)
T ss_pred HHHHHHHhcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc---------------------chHHH
Confidence 9999999984321 1335688889999999999999999887321 14688
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 010080 443 FIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD 507 (518)
Q Consensus 443 L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~ 507 (518)
|..+|.++++.+...+..+|..+ .. + ....+.|..+..+++.+|+..|...|+
T Consensus 843 L~~~L~D~~~~VR~~A~~aL~~~-~~--~---------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 843 LVEALTDPHLDVRKAAVLALTRW-PG--D---------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcc-CC--C---------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99999999999999999988875 11 1 112456778889999999999988775
No 34
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.34 E-value=3.5e-13 Score=107.25 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=54.4
Q ss_pred CCccCccccccccccc-CchHHhhh-HHHHHHHhhHhhHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHHhhhHHH
Q 010080 3 DDSLNHHKRDPIKSSV-GNVAAQRR-RQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSA 80 (518)
Q Consensus 3 ~~~~~~~r~~~~k~~~-~~~~~~rr-~~~~~~~rk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (518)
+.+.++.|++.||++| +.++.||| .+..|+|||+||||+|.|||+. .....+..+...+.. . .......
T Consensus 2 ~~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~--~~~~~~~~~~~~~~~---~----~~~~~~~ 72 (97)
T PF01749_consen 2 SSKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNI--NMADEESSSEESESD---Q----NSSAQQL 72 (97)
T ss_dssp -----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT--------------------------TCCCCS-
T ss_pred CccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCcccccccccccc---c----ccccccc
Confidence 3567899999999986 55555444 5699999999999999999963 222211111000000 0 0001122
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH
Q 010080 81 VEELKSAVAYHGKGAMQKRVNALRE 105 (518)
Q Consensus 81 ~~~l~~~l~~~~s~~~~~~~~a~~~ 105 (518)
...++.++.+++|+|+..++.|++.
T Consensus 73 ~~~l~~~v~~v~S~d~~~ql~Atq~ 97 (97)
T PF01749_consen 73 NEELPEMVAGVNSDDPEVQLEATQQ 97 (97)
T ss_dssp -HHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred ccccHHHHHhcCCCCHHHHHHhhCC
Confidence 3566667777889999999999863
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.32 E-value=2.3e-09 Score=114.28 Aligned_cols=327 Identities=16% Similarity=0.151 Sum_probs=233.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~ 161 (518)
.++.+.+...+ .+...+.+++..+-.+...+.+. +-+.+..++++.+++ ...++-+.-++..+...+++..
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~-------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~ 77 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDI-------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELL 77 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCC-------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHH
Confidence 45666665333 47888999998888876665432 357888888888544 4555557777888887777622
Q ss_pred HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080 162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 241 (518)
. -++..+.+=|.+ +++.++..|+.+|++++. ++..+. .++.+.+++.++++.+++.|+-++..+.+..
T Consensus 78 ~---l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~- 145 (526)
T PF01602_consen 78 I---LIINSLQKDLNS-PNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKD- 145 (526)
T ss_dssp H---HHHHHHHHHHCS-SSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-
T ss_pred H---HHHHHHHHhhcC-CCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccC-
Confidence 2 356677777877 799999999999999984 444433 4788889999999999999999999999753
Q ss_pred CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 321 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~ 321 (518)
|. .+... +++.+.+++.+.|+.++..|+.++..+ ..++.... -.-...++.|..++ ...++-.+..+++++.
T Consensus 146 p~----~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l-~~~~~~~q~~il~~l~ 217 (526)
T PF01602_consen 146 PD----LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLL-SDPDPWLQIKILRLLR 217 (526)
T ss_dssp HC----CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHH-TCCSHHHHHHHHHHHT
T ss_pred HH----HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcc-cccchHHHHHHHHHHH
Confidence 22 32223 799999999999999999999999999 22222211 11234455555555 4678888889999999
Q ss_pred hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChh
Q 010080 322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD 401 (518)
Q Consensus 322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~ 401 (518)
.++...+..... ..+++.+..++.+.++.|..+|+.++..+.... . .-..+++.|..+|.+.++.
T Consensus 218 ~~~~~~~~~~~~---------~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~lL~s~~~n 282 (526)
T PF01602_consen 218 RYAPMEPEDADK---------NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKLLSSSDPN 282 (526)
T ss_dssp TSTSSSHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHHHTSSSHH
T ss_pred hcccCChhhhhH---------HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHHhhcccch
Confidence 887655432210 248889999999999999999999999886543 3 2223688999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHc
Q 010080 402 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR 467 (518)
Q Consensus 402 v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~ 467 (518)
++.-|+.+|..++... | ..+ . ..-..+..+..++|..++..+++.|..+..
T Consensus 283 vr~~~L~~L~~l~~~~------~-------~~v-~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 283 VRYIALDSLSQLAQSN------P-------PAV-F-NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HHHHHHHHHHHHCCHC------H-------HHH-G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred hehhHHHHHHHhhccc------c-------hhh-h-hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 9999999999998631 1 122 2 222223333447889999999999998874
No 36
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.5e-10 Score=115.51 Aligned_cols=309 Identities=15% Similarity=0.178 Sum_probs=202.7
Q ss_pred CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc------CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC
Q 010080 125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 198 (518)
Q Consensus 125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~------~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~ 198 (518)
.++|.|+++|.+++.. .+-.|..+|..|+.++.+..+.-+ -.+|.|+.+.++ +++.+|..|+.|+..+....
T Consensus 128 elLp~L~~~L~s~d~n-~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYN-TCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCCccc-ccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecC
Confidence 4789999999976633 223499999999988776555432 279999999987 79999999999999877643
Q ss_pred hhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHH
Q 010080 199 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV 278 (518)
Q Consensus 199 ~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~ 278 (518)
.+.-..-+ ...+..|..+-...+++++.+.+.+|..|..-...+.... ..++++++++..++.|++|..+||-...
T Consensus 206 ~qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph---l~~IveyML~~tqd~dE~VALEACEFwl 281 (885)
T KOG2023|consen 206 TQALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH---LDNIVEYMLQRTQDVDENVALEACEFWL 281 (885)
T ss_pred cHHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc---hHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 32221111 2346666677677799999999999999986532121111 3478888888888999999999999999
Q ss_pred HhhcCCchhhhHHHh---cCchHHHHHHHc---------cCCC-------------------------------------
Q 010080 279 YLSALSNVATSLLVK---SGVLQLLVERLA---------TSNS------------------------------------- 309 (518)
Q Consensus 279 ~L~~~~~~~~~~~~~---~g~~~~Lv~lL~---------~~~~------------------------------------- 309 (518)
.++..+ ....++. ..++|.|+.-+. .+.+
T Consensus 282 a~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe 359 (885)
T KOG2023|consen 282 ALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDE 359 (885)
T ss_pred HHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccc
Confidence 999754 3333322 123333333221 0000
Q ss_pred ---------ccc---hhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHH
Q 010080 310 ---------LQL---LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE 377 (518)
Q Consensus 310 ---------~~v---~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~ 377 (518)
..+ ...++-+|+|+... .++ .-++|.|...|.++...+|+.+..+++.|+.|+
T Consensus 360 ~DDdD~~~dWNLRkCSAAaLDVLanvf~~------elL-------~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc-- 424 (885)
T KOG2023|consen 360 DDDDDAFSDWNLRKCSAAALDVLANVFGD------ELL-------PILLPLLKEHLSSEEWKVREAGVLALGAIAEGC-- 424 (885)
T ss_pred cccccccccccHhhccHHHHHHHHHhhHH------HHH-------HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH--
Confidence 000 11222223332111 111 235666666777888999999999999999876
Q ss_pred HHHHHHhC--CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHH
Q 010080 378 HKQLIHSS--EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA 455 (518)
Q Consensus 378 ~~~~li~~--~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~ 455 (518)
.+.++.+ .++|.|+.+|.+..+-||+.+||+|+..+..-... .+ +++... ++..|+..+-+++.+++
T Consensus 425 -M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~--~~---~~~f~p-----vL~~ll~~llD~NK~VQ 493 (885)
T KOG2023|consen 425 -MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD--SR---DEYFKP-----VLEGLLRRLLDSNKKVQ 493 (885)
T ss_pred -hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC--Ch---HhhhHH-----HHHHHHHHHhcccHHHH
Confidence 2333333 37999999999999999999999999986642100 00 122222 34555555556788888
Q ss_pred HHHHHHHHHHHc
Q 010080 456 RLGLQFMELVLR 467 (518)
Q Consensus 456 ~~~l~~l~~il~ 467 (518)
+.++.++..+-+
T Consensus 494 EAAcsAfAtleE 505 (885)
T KOG2023|consen 494 EAACSAFATLEE 505 (885)
T ss_pred HHHHHHHHHHHH
Confidence 888777765543
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.26 E-value=2.1e-09 Score=114.53 Aligned_cols=368 Identities=16% Similarity=0.146 Sum_probs=216.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CCh
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PAL 168 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v 168 (518)
.+.++++..+-.|+.++.++....++- +-.. .+|.+.++|...+ +.++..|+.++..+ ...++....++ ..+
T Consensus 122 ll~~~~~~VRk~A~~~l~~i~~~~p~~----~~~~-~~~~l~~lL~d~~-~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~ 194 (526)
T PF01602_consen 122 LLSDPSPYVRKKAALALLKIYRKDPDL----VEDE-LIPKLKQLLSDKD-PSVVSAALSLLSEI-KCNDDSYKSLIPKLI 194 (526)
T ss_dssp HHHSSSHHHHHHHHHHHHHHHHHCHCC----HHGG-HHHHHHHHTTHSS-HHHHHHHHHHHHHH-HCTHHHHTTHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHhccCHHH----HHHH-HHHHHhhhccCCc-chhHHHHHHHHHHH-ccCcchhhhhHHHHH
Confidence 445778888888888888876653321 2223 7888999996544 66667788888888 22222211222 355
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080 169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL 248 (518)
Q Consensus 169 ~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 248 (518)
..|.+++.. .++-++..++.+|..++...+...+. ...++.+..++++.+..+.-.++.++..+... . ..
T Consensus 195 ~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~----~--~~ 264 (526)
T PF01602_consen 195 RILCQLLSD-PDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS----P--EL 264 (526)
T ss_dssp HHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----H--HH
T ss_pred HHhhhcccc-cchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc----h--HH
Confidence 555666555 67888889999999988766555422 44577777777777788888888888877532 1 12
Q ss_pred HHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC
Q 010080 249 IKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS 328 (518)
Q Consensus 249 i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~ 328 (518)
...+++.|.+++.+.++.++..++.+|..++...+.. +. .....+..+..+++..++..++.++.+++...+
T Consensus 265 --~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~---v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n 336 (526)
T PF01602_consen 265 --LQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA---VF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESN 336 (526)
T ss_dssp --HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH---HG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred --HHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh---hh---hhhhhhheecCCCChhHHHHHHHHHhhcccccc
Confidence 3577888888888888888888888888887643111 11 111112223224445555555555555553321
Q ss_pred cccceeecc--------C-------------------CCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHH
Q 010080 329 STISDVLVP--------G-------------------HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL 381 (518)
Q Consensus 329 ~~~~~~i~~--------G-------------------~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~ 381 (518)
.. .+++. + .....-.++.++.++......+..++...+.++....++....
T Consensus 337 ~~--~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~ 414 (526)
T PF01602_consen 337 VK--EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREK 414 (526)
T ss_dssp HH--HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHH
T ss_pred hh--hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHH
Confidence 10 00000 0 0000123444444444444444444444454444333222211
Q ss_pred HHhCCCHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHH
Q 010080 382 IHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ 460 (518)
Q Consensus 382 li~~~~i~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~ 460 (518)
++..|++.+.+ .++.+++.++|+++..+...... +.. ...+..+.+.+...++.++..++.
T Consensus 415 -----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~--------~~~-----~~~~~~l~~~~~~~~~~vk~~ilt 476 (526)
T PF01602_consen 415 -----ILKKLIELLEDISSPEALAAAIWILGEYGELIENT--------ESA-----PDILRSLIENFIEESPEVKLQILT 476 (526)
T ss_dssp -----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTT--------THH-----HHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCccccc--------ccH-----HHHHHHHHHhhccccHHHHHHHHH
Confidence 36677777754 67789999999999886532100 001 113445555555566778888999
Q ss_pred HHHHHHccCCCCcchhHHHhhchHHHHHHHhc--CCCHHHHHHHHHHHH
Q 010080 461 FMELVLRGMPNHEGTKLVEREDGIDAMERFQF--HENEDLRNMANGLVD 507 (518)
Q Consensus 461 ~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~--~~~~~i~~~a~~il~ 507 (518)
++..+....+...... ..++.+..+.. +.|.+|+++|...+.
T Consensus 477 ~~~Kl~~~~~~~~~~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 477 ALAKLFKRNPENEVQN-----EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHHHHHHSCSTTHHH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HHHHHHhhCCchhhHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 9988887654321111 23456677777 889999999987654
No 38
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.20 E-value=4.7e-09 Score=106.72 Aligned_cols=370 Identities=14% Similarity=0.094 Sum_probs=223.1
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010080 81 VEELKSAVAYHGKGA-MQKRVNALRELRRLLSRFEFPPI-ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 158 (518)
Q Consensus 81 ~~~l~~~l~~~~s~~-~~~~~~a~~~lr~lls~~~~~~~-~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~ 158 (518)
...+.++++.+.+.| .......++++|.+++..+..+. .......+++.+.-++..+. ....+.-+....+. ++.+
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~l-k~~~~l~~~~~a~~-s~~~ 171 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIEL-KYISRLDVSRAAHL-SSTK 171 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhh-hhhhhhhhhhhccc-cccc
Confidence 456677778888888 55666777999999887654433 23334667777777766222 21222223333334 4444
Q ss_pred HHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHH---hhhCCChhhHHH----HHhcCChh--HHHhhhCCCChhHHHH
Q 010080 159 EETKALL-PALPLLIAHLGEKSSSPVAEQCAWALG---NVAGEGEEFRNV----LLSQGALP--PLARMMLPNKGSTVRT 228 (518)
Q Consensus 159 ~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~---nla~d~~~~r~~----~~~~g~i~--~L~~ll~~~~~~~~~~ 228 (518)
++...+. .+++-=+.++.......++.+|..++. ++...++..... ....|+.+ .+.+++++++.+.+-.
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 4443333 344444444433356789999999999 887766654433 34456555 5667888888888888
Q ss_pred HHHHHHHhhcCCC---CCchhhHHHhhc--hH-H-----------------------HHHHHhc------cC-C-hhHHH
Q 010080 229 AAWALSNLIKGPD---PKPATELIKVDG--LL-D-----------------------AILRHLK------RA-D-EELTT 271 (518)
Q Consensus 229 a~~~L~nL~~~~~---~~~~~~~i~~~~--~l-~-----------------------~L~~lL~------~~-d-~~v~~ 271 (518)
++.++.++++... |.+-.......| .+ . .+..+.. ++ + .+...
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence 8899998887641 111111111111 00 0 0000000 00 0 12233
Q ss_pred HHHHHHHHhhcCCchhhhHHHhcCchH----------------------HHHHHHccCCCccchhhhhhhhhhhhcCCCc
Q 010080 272 EVAWVVVYLSALSNVATSLLVKSGVLQ----------------------LLVERLATSNSLQLLIPVLRSLGNLVAGDSS 329 (518)
Q Consensus 272 ~a~~~L~~L~~~~~~~~~~~~~~g~~~----------------------~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~ 329 (518)
..+.+-+.+..+.+.+....+....++ .+..+. -+.+...+..+|-++-+++..-+.
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~-~~kd~~~~aaa~l~~~s~srsV~a 410 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLP-PIKDHDFVAAALLCLKSFSRSVSA 410 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333332222111110 111111 134555666777666666533211
Q ss_pred ccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHH
Q 010080 330 TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV 409 (518)
Q Consensus 330 ~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~a 409 (518)
++.| .-...+..+|++++..+...|...+..+|.|+.-........++..|++..+..++.+.++.+++.+.|+
T Consensus 411 -----L~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~ 484 (678)
T KOG1293|consen 411 -----LRTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWV 484 (678)
T ss_pred -----HHcC-CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence 1111 0123588899999988888999999999999998766778889999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCchhHHHHHHHHH-hcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 410 LGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 410 L~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
|.++..++. +-.+... ..=.-..+..+.+++|+.+++.++..+.|+....
T Consensus 485 Lr~l~f~~d----------e~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 485 LRHLMFNCD----------EEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHhcch----------HHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 999988642 2222222 2223445666777899999999999999998754
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.20 E-value=5.7e-08 Score=104.86 Aligned_cols=291 Identities=15% Similarity=0.095 Sum_probs=204.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~ 161 (518)
.+|...|+ +.+...+.+|++.+-.+...+.+- +.+.|-.+.++.+++ ..++.-....+.+++...++..
T Consensus 35 ~ELr~~L~---s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 35 AELQNDLN---GTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred HHHHHHHH---CCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence 45666554 778888999998887777666422 336677777887665 4454557778888887666533
Q ss_pred HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080 162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 241 (518)
+-++..|.+=+.+ +|+.+|-.|+.+|++|-. +..-+. .++++.+.+.+.++.+++.|+.++..+.+..
T Consensus 104 ---lLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~- 171 (746)
T PTZ00429 104 ---LLAVNTFLQDTTN-SSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDD- 171 (746)
T ss_pred ---HHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-
Confidence 3356777887877 799999999999999875 233222 4567788888899999999999999998643
Q ss_pred CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 321 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~ 321 (518)
|. .+...++++.|..+|.+.|+.|+.+|+.+|..+....+.... ...+.+..++..|. .-++=.+...+.+|.
T Consensus 172 pe----lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~-e~~EW~Qi~IL~lL~ 244 (746)
T PTZ00429 172 MQ----LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLP-ECNEWGQLYILELLA 244 (746)
T ss_pred cc----cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhh-cCChHHHHHHHHHHH
Confidence 32 333568999999999999999999999999999875443332 34566777777774 334444556666665
Q ss_pred hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCCh
Q 010080 322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPF 400 (518)
Q Consensus 322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~ 400 (518)
.....++ ... ..++..+...|.|.++.|.-+|+.++-+++.. .++.++.+.. .+-++|+.++ ++++
T Consensus 245 ~y~P~~~---~e~--------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~ 311 (746)
T PTZ00429 245 AQRPSDK---ESA--------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDA 311 (746)
T ss_pred hcCCCCc---HHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCc
Confidence 4322221 111 24788888899999999999999999999754 2343333322 2446677764 5567
Q ss_pred hHHHHHHHHHHHhcC
Q 010080 401 DIKKEVAYVLGNLCV 415 (518)
Q Consensus 401 ~v~~eA~~aL~nl~~ 415 (518)
.+|.-++..|.-++.
T Consensus 312 eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 312 ETQYIVCKNIHALLV 326 (746)
T ss_pred cHHHHHHHHHHHHHH
Confidence 888888877766654
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.18 E-value=1.5e-08 Score=101.84 Aligned_cols=321 Identities=14% Similarity=0.116 Sum_probs=214.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-----CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 010080 83 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKA-----GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK 157 (518)
Q Consensus 83 ~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~-----g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~ 157 (518)
-+..++.. ..+.+..-..+.-+-.++...+ .....+.+. .....++.+|..++ .-++..|+.+|+.+.+..
T Consensus 57 ~~l~ll~~--~~~~d~vqyvL~Li~dll~~~~-~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 57 TFVNLLSQ--IDKDDTVRYVLTLIDDMLQEDD-TRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHhc--cCcHHHHHHHHHHHHHHHHhch-HHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcC
Confidence 34445542 3445666667777778777642 222334432 46677888887654 345566999999998644
Q ss_pred hHHHHH-hcC-ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHH
Q 010080 158 QEETKA-LLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWAL 233 (518)
Q Consensus 158 ~~~~~~-v~~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L 233 (518)
...... ... .++.|...|.++.+...+..|+.+|.++.. .+++|..+.+.+++++|+.+|+.. ...++-.++.|+
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 322111 111 344566666654457888999999999988 679999999999999999999853 568889999999
Q ss_pred HHhhcCCCCCchhhHHHhhchHHHHHHHhcc-CChhHHHHHHHHHHHhhcCC------chhhhHHHhcCchHHHHHHHcc
Q 010080 234 SNLIKGPDPKPATELIKVDGLLDAILRHLKR-ADEELTTEVAWVVVYLSALS------NVATSLLVKSGVLQLLVERLAT 306 (518)
Q Consensus 234 ~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~------~~~~~~~~~~g~~~~Lv~lL~~ 306 (518)
+-|+.... ..+.....+.+|.++.++.. .-+.+..-++.+|.|+...+ ......+++.|+.+.+-.+...
T Consensus 212 WlLSF~~~---~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r 288 (429)
T cd00256 212 WLLTFNPH---AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQR 288 (429)
T ss_pred HHHhccHH---HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcC
Confidence 99986532 22333456899999999984 45678899999999999732 1234566777765544443321
Q ss_pred -CCCccchhhhhhhhhhhh--------cCCCcccceeeccCCC---------------------chhhhHHHHHHHhc-c
Q 010080 307 -SNSLQLLIPVLRSLGNLV--------AGDSSTISDVLVPGHG---------------------ITDQVIAVLVKCLK-S 355 (518)
Q Consensus 307 -~~~~~v~~~al~~L~nl~--------~~~~~~~~~~i~~G~~---------------------~~~~~l~~L~~lL~-~ 355 (518)
-.++++. ..+..|.... +.+..... +..|.. -+-.++..|+.+|. +
T Consensus 289 k~~DedL~-edl~~L~e~L~~~~k~ltsfD~Y~~E--l~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s 365 (429)
T cd00256 289 KYDDEDLT-DDLKFLTEELKNSVQDLSSFDEYKSE--LRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETS 365 (429)
T ss_pred CCCcHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHH--HhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 1233332 2222222221 11100000 011110 02356788999994 5
Q ss_pred ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 356 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 356 ~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
.++.+..-||.=|+.++...|.....+-+.|+=..++++|.++|++||++|..|+.-+.
T Consensus 366 ~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 366 VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 67888889999999999988777777778899999999999999999999999987764
No 41
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.17 E-value=2.4e-08 Score=100.30 Aligned_cols=332 Identities=14% Similarity=0.123 Sum_probs=224.0
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhc-----CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-----GALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-----g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 241 (518)
.+..|+.+|...++.++.+..+-.+.-+..+++.....+.+. ....+++.+|..++.-+...++..|+.+....
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~- 132 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG- 132 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC-
Confidence 466777888777788888888888888888776655555553 46677888998888889999999999887542
Q ss_pred CCchhhHHHhhchHHHHHHHhccC-ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCC-Cccchhhhhhh
Q 010080 242 PKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRS 319 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~-~~~v~~~al~~ 319 (518)
+...... ...-.++.|...+.+. +...+..+..+|..|.. .++....+.+.++++.|+.+|.... +.+.+-.++-|
T Consensus 133 ~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 133 LAKMEGS-DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred ccccchh-HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 1111111 0112444556666544 35677777888999887 4556777778889999999996433 44666678888
Q ss_pred hhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-hhhhHHHHHHHHHHhccCC------HHHHHHHHhCCCHHHHH
Q 010080 320 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGS------VEHKQLIHSSEALALLL 392 (518)
Q Consensus 320 L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Lsnl~~~~------~~~~~~li~~~~i~~Li 392 (518)
+.-++...+ ...... ..++++.|+.++... +.++.+-+..++.|+...+ ......+++.|+++.+-
T Consensus 211 lWlLSF~~~-~~~~~~------~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~ 283 (429)
T cd00256 211 IWLLTFNPH-AAEVLK------RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQ 283 (429)
T ss_pred HHHHhccHH-HHHhhc------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHH
Confidence 887776654 222222 246999999999754 5688999999999998742 22344567777766555
Q ss_pred HHhc--CCChhHHHHHHHHH-------HHhcCCCC-----CCCC---Cchh-----HHHHHHHHHhc--CchHHHHHhhc
Q 010080 393 HLLS--TSPFDIKKEVAYVL-------GNLCVSPT-----EGEG---KPKL-----IQEHLVSLVGR--GCLSGFIDLVR 448 (518)
Q Consensus 393 ~lL~--~~~~~v~~eA~~aL-------~nl~~~~~-----~~~~---~~~~-----~~~~~~~l~~~--g~i~~L~~lL~ 448 (518)
.+.. -.|+++.......- ..+++..+ .+|. +|-+ -.++...+-+. .+++.|+++|.
T Consensus 284 ~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~ 363 (429)
T cd00256 284 SLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLE 363 (429)
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 5442 25666543322211 11221000 0000 1110 02444455544 36889999995
Q ss_pred -cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080 449 -SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510 (518)
Q Consensus 449 -~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f 510 (518)
+.|+.++.+|+-=|..+.+..|. ++..+++.||-+.+-+|..|+|++|+..|..-+.+..
T Consensus 364 ~s~d~~~laVAc~Dige~vr~~P~--gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 364 TSVDPIILAVACHDIGEYVRHYPR--GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred cCCCcceeehhhhhHHHHHHHCcc--HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 67888888888888888888765 5788899999999999999999999999977776654
No 42
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=6.7e-09 Score=105.37 Aligned_cols=400 Identities=15% Similarity=0.159 Sum_probs=243.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHHc--C--CHHHHHHHh-cCC------C-ChHHH-H
Q 010080 80 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFE--FPPIETALKA--G--AIPVLVQCL-AFG------S-PDEQL-L 144 (518)
Q Consensus 80 ~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~--~~~~~~~i~~--g--~ip~Lv~~L-~~~------~-~~~~~-~ 144 (518)
.+.++.++++.-.|+|.+.+..+...+.++-.... |.-+...++. . ....+..+| +.+ . ++..+ +
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~y 90 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDY 90 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHH
Confidence 35678888888889999999988888877544221 1111111111 0 111222222 210 0 11111 2
Q ss_pred HHHHHHHHHhcCChHHHHHhc-----------------CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHh
Q 010080 145 EAAWCLTNIAAGKQEETKALL-----------------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS 207 (518)
Q Consensus 145 eA~~~L~nia~~~~~~~~~v~-----------------~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~ 207 (518)
-=..+|.++...++ ...+.+ ..+|.|..+|.+ ++...+|-|..+|..||.|+.+.-+.-..
T Consensus 91 iKs~~l~~lgd~~~-lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~ 168 (885)
T KOG2023|consen 91 IKSECLHGLGDASP-LIRATVGIVITTIASTGGLQHWPELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVL 168 (885)
T ss_pred HHHHHHhhccCchH-HHHhhhhheeeeeecccccccchhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcc
Confidence 23455666654433 222221 168899999988 67789999999999999999876554221
Q ss_pred ----cCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC
Q 010080 208 ----QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL 283 (518)
Q Consensus 208 ----~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 283 (518)
.-.||.++++.+++++.++..|+.|+-.+.-.. ++. -++....++..+..+-++++++|+...|.+|.+|.+-
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~qa--l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-TQA--LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-cHH--HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 135788889999999999999999998766432 221 1333457888888888899999999999999999974
Q ss_pred CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-------
Q 010080 284 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE------- 356 (518)
Q Consensus 284 ~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~------- 356 (518)
.++...--. .++++.++..- +..+.+|...||-..-.++.... -..++.. .-..++|+|++-+..+
T Consensus 246 r~dkl~phl-~~IveyML~~t-qd~dE~VALEACEFwla~aeqpi--~~~~L~p---~l~kliPvLl~~M~Ysd~D~~LL 318 (885)
T KOG2023|consen 246 RPDKLVPHL-DNIVEYMLQRT-QDVDENVALEACEFWLALAEQPI--CKEVLQP---YLDKLIPVLLSGMVYSDDDIILL 318 (885)
T ss_pred cHHhcccch-HHHHHHHHHHc-cCcchhHHHHHHHHHHHHhcCcC--cHHHHHH---HHHHHHHHHHccCccccccHHHh
Confidence 443321111 24555555544 45667788888888777775541 1111100 0123555554422111
Q ss_pred -------------------------------------------------hhhhHHHHHHHHHHhccCCHHHHHHHHhCCC
Q 010080 357 -------------------------------------------------HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA 387 (518)
Q Consensus 357 -------------------------------------------------~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~ 387 (518)
+.++|+.++.+|.-++.-..+ .++.. +
T Consensus 319 ~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL~~-l 394 (885)
T KOG2023|consen 319 KNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELLPI-L 394 (885)
T ss_pred cCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH---HHHHH-H
Confidence 134565555555444432212 22222 5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc--CchHHHHHhhccCCHHHHHHHHHHHHHH
Q 010080 388 LALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR--GCLSGFIDLVRSADIEAARLGLQFMELV 465 (518)
Q Consensus 388 i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~--g~i~~L~~lL~~~d~~~~~~~l~~l~~i 465 (518)
+|.|-+.|.+.+..+|+.++.|++-++.++ .+.++.. ..+|.|+.+|.++.+-+....++.|...
T Consensus 395 ~PlLk~~L~~~~W~vrEagvLAlGAIAEGc-------------M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRy 461 (885)
T KOG2023|consen 395 LPLLKEHLSSEEWKVREAGVLALGAIAEGC-------------MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRY 461 (885)
T ss_pred HHHHHHHcCcchhhhhhhhHHHHHHHHHHH-------------hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhh
Confidence 777777788889999999999999998743 1222222 3689999999999998888888888876
Q ss_pred HccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080 466 LRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510 (518)
Q Consensus 466 l~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f 510 (518)
-......+....+.. .++.|-+-.-+.|+.+++.|+....++-
T Consensus 462 s~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 462 SKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred hhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 543221111122211 1222333346789999999988777653
No 43
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1e-08 Score=105.61 Aligned_cols=358 Identities=15% Similarity=0.187 Sum_probs=225.7
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCC-------------CCCcH-HHHH---HcCCHHHHHHHhcCCC------ChHHHHH
Q 010080 89 AYHGKGAMQKRVNALRELRRLLSRF-------------EFPPI-ETAL---KAGAIPVLVQCLAFGS------PDEQLLE 145 (518)
Q Consensus 89 ~~~~s~~~~~~~~a~~~lr~lls~~-------------~~~~~-~~~i---~~g~ip~Lv~~L~~~~------~~~~~~e 145 (518)
..++|++.+..++|+.-+......+ .-||. ..+. -.+++|.|+++|...+ ....-..
T Consensus 266 ~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA 345 (859)
T KOG1241|consen 266 AAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA 345 (859)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence 3567999999999998777522111 11221 1111 1478999999997421 1123345
Q ss_pred HHHHHHHHhcCChHHHHHhcC-ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChh
Q 010080 146 AAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS 224 (518)
Q Consensus 146 A~~~L~nia~~~~~~~~~v~~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~ 224 (518)
|.-||.-++. ...+.++. .+|.+-.-+.+ ++..-++.|+.++|.+-..-...+..-+..+++|.++.++..+..-
T Consensus 346 Ag~CL~l~A~---~~~D~Iv~~Vl~Fiee~i~~-pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 346 AGVCLMLFAQ---CVGDDIVPHVLPFIEENIQN-PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHHHH---HhcccchhhhHHHHHHhcCC-cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh
Confidence 6667776663 22334443 34444446766 8899999999999999886667777777889999999999988888
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHH----HhcCchHHH
Q 010080 225 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL----VKSGVLQLL 300 (518)
Q Consensus 225 ~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~----~~~g~~~~L 300 (518)
+++.+.|+|..+|.+- |..+-......+.++.++.-|+ +.|.+..++||++.+|+++-.+....- ......+.+
T Consensus 422 VkdTaAwtlgrI~d~l-~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i 499 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFL-PEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI 499 (859)
T ss_pred hcchHHHHHHHHHhhc-hhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH
Confidence 8899999999999763 2222222223455555555553 457899999999999995321111000 001233334
Q ss_pred HHHHcc------CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHH---------HhccCh----hhhH
Q 010080 301 VERLAT------SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVK---------CLKSEH----RVLK 361 (518)
Q Consensus 301 v~lL~~------~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~---------lL~~~~----~~i~ 361 (518)
+.-|.. .+....+..|..+|+.++...+...-.++ .++...+.. .+...+ ..++
T Consensus 500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v-------~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQ 572 (859)
T KOG1241|consen 500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMV-------QKLTLVILEKLDQTISSQILSLADRAQLNELQ 572 (859)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHH-------HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence 433321 13456788999999999977654433222 133333333 333332 2677
Q ss_pred HHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch
Q 010080 362 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 440 (518)
Q Consensus 362 ~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i 440 (518)
..-|-+|..+.+.....+..+.+. ++..+++++.+ .+.-+..+|..+++.++.... + ...+|+ ..+.
T Consensus 573 s~Lc~~Lq~i~rk~~~~~~~~~d~-iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg---~------~F~kym--~~f~ 640 (859)
T KOG1241|consen 573 SLLCNTLQSIIRKVGSDIREVSDQ-IMGLFLRIFESKRSAVVHEEAFLAVSTLAESLG---K------GFAKYM--PAFK 640 (859)
T ss_pred HHHHHHHHHHHHHccccchhHHHH-HHHHHHHHHcCCccccchHHHHHHHHHHHHHHh---H------hHHHHH--HHHH
Confidence 788888888876543344444443 77788999987 455688899999998877531 1 122232 2245
Q ss_pred HHHHHhh-ccCCHHHHHHHHHHHHHHHccCCC
Q 010080 441 SGFIDLV-RSADIEAARLGLQFMELVLRGMPN 471 (518)
Q Consensus 441 ~~L~~lL-~~~d~~~~~~~l~~l~~il~~~~~ 471 (518)
|.|..-| +..+..+...+...+..|.+..+.
T Consensus 641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~ 672 (859)
T KOG1241|consen 641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALED 672 (859)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666 456778888888888888776543
No 44
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.4e-08 Score=105.69 Aligned_cols=257 Identities=18% Similarity=0.159 Sum_probs=200.2
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHh-cCChHHHHHhc---CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhh
Q 010080 126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIA-AGKQEETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF 201 (518)
Q Consensus 126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia-~~~~~~~~~v~---~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~ 201 (518)
-+..|++=|+...++..|.+|+.-|+.+- -++.+... .+ ..||.|+.+|+...+.++.-+|++||.+++.-.|.-
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs-~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLS-GFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhc-cccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 34555556665545677888777776544 45554443 33 389999999998788999999999999999888888
Q ss_pred HHHHHhcCChhHHHh-hhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080 202 RNVLLSQGALPPLAR-MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL 280 (518)
Q Consensus 202 r~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L 280 (518)
...+++.++||.|+. |+.-...++.++++-+|-.|++.. |+ .+..+|++-..+.+|.--...++..|+.+.+|+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~~----AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~ 321 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-PK----AILQAGALSAVLSYLDFFSIHAQRVALAIAANC 321 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-cH----HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999996 555678999999999999999863 33 334689999999998877778899999999999
Q ss_pred hcC-CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCC---CcccceeeccCCCchhhhHHHHHHHhccC
Q 010080 281 SAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD---SSTISDVLVPGHGITDQVIAVLVKCLKSE 356 (518)
Q Consensus 281 ~~~-~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~---~~~~~~~i~~G~~~~~~~l~~L~~lL~~~ 356 (518)
|.. .++....+.+ ++|.|..+|. +.+.+.+..++-++..++.+. ++..+.+. .++++.-..+|+.-.
T Consensus 322 Cksi~sd~f~~v~e--alPlL~~lLs-~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~------s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 322 CKSIRSDEFHFVME--ALPLLTPLLS-YQDKKPIESVCICLTRIADGFQHGPDKLDQLC------SHDLITNIQQLLSVT 392 (1051)
T ss_pred HhcCCCccchHHHH--HHHHHHHHHh-hccchhHHHHHHHHHHHHHhcccChHHHHHHh------chhHHHHHHHHHhcC
Confidence 974 4455666654 5899999994 778888899999998888543 33344454 357999888888655
Q ss_pred h----hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC
Q 010080 357 H----RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST 397 (518)
Q Consensus 357 ~----~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~ 397 (518)
. ..+.......++-++.+++-....+...++...|..+|..
T Consensus 393 ~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 393 PTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred cccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 3 2556677888999999988888888888999999998854
No 45
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=8.1e-07 Score=87.43 Aligned_cols=346 Identities=14% Similarity=0.130 Sum_probs=227.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CC
Q 010080 89 AYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PA 167 (518)
Q Consensus 89 ~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~ 167 (518)
+.+...+.+..+-.+.-|.+ ||..... ...+.+.|+|.+|+.++.... +++....+..+.|++.++.-..+.+- |.
T Consensus 311 KaLdr~n~~Ll~lv~~FLkK-LSIf~eN-K~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD~glr~KMv~~Gl 387 (791)
T KOG1222|consen 311 KALDRSNSSLLTLVIKFLKK-LSIFDEN-KIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFDSGLRPKMVNGGL 387 (791)
T ss_pred HHHcccchHHHHHHHHHHHH-hhhhccc-hHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccccccccHHHhhccc
Confidence 35556666665555566666 6644322 256778999999999998766 45656688999999977654444444 79
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
+|.+..+|.+. .-..-|+..|..++.| ..++..+....+|+.++..+- ..+..+-.......-|||-++. ..
T Consensus 388 lP~l~~ll~~d---~~~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR---Na 460 (791)
T KOG1222|consen 388 LPHLASLLDSD---TKHGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR---NA 460 (791)
T ss_pred hHHHHHHhCCc---ccchhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc---cc
Confidence 99999999763 2334567788888884 477788888889999987554 4455555555555568886642 23
Q ss_pred hHHHhhchHHHHHHH-hccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080 247 ELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 247 ~~i~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 325 (518)
.++....++..|+.. +++.|.-+ ...+.+++.........+++ .+..|...+...++......++.+++|+.-
T Consensus 461 QlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v 534 (791)
T KOG1222|consen 461 QLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKV 534 (791)
T ss_pred eEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence 355556677777654 44555432 34556777654433444443 356677777666677778889999999976
Q ss_pred CCCcccceeeccCCCchhhhHHHHHHHhccC--hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC--Chh
Q 010080 326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--PFD 401 (518)
Q Consensus 326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~--~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~ 401 (518)
.+-+..+. +. +.+++|.+...|... ...+.-+..-+++.++... .....+..+++++.|+++|+.. |.+
T Consensus 535 ~dldw~~i-lq-----~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~-~cA~Lla~a~~i~tlieLL~a~QeDDE 607 (791)
T KOG1222|consen 535 TDLDWAKI-LQ-----SENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL-DCARLLAPAKLIDTLIELLQACQEDDE 607 (791)
T ss_pred CCCCHHHH-Hh-----hccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh-HHHHHhCccccHHHHHHHHHhhcccch
Confidence 55443332 32 347899999988764 2356666777777765432 3333345679999999999653 334
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc-hHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080 402 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC-LSGFIDLVRSADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 402 v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~-i~~L~~lL~~~d~~~~~~~l~~l~~il~~ 468 (518)
......++...+..+ +.-.++|++... -..|++++..++.++.++|=.+|.-|..+
T Consensus 608 fV~QiiyVF~Q~l~H-----------e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 608 FVVQIIYVFLQFLKH-----------ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 555566666666553 122456665544 44599999999999888887777766554
No 46
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.95 E-value=3.1e-08 Score=97.80 Aligned_cols=232 Identities=17% Similarity=0.194 Sum_probs=165.1
Q ss_pred hHHHHHHHhc--cCChhHHHHHHHHHHHhhcCCchhhhHHHh------cCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080 254 LLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATSLLVK------SGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 254 ~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~------~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 325 (518)
....++++|+ +++++++..++-.+..|...++...+.+.. ......++.++ .+++..+...++++++.+..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 3445555555 367899999999999999877777776655 22677888877 57788889999999999998
Q ss_pred CCCcccceeeccCCCchhhhHHHHHHHhcc----ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh------
Q 010080 326 GDSSTISDVLVPGHGITDQVIAVLVKCLKS----EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL------ 395 (518)
Q Consensus 326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~----~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL------ 395 (518)
..+....... .++++.++.++.+ ++..++.-|+.+++++.. .++.+..+.+.|+++.|..+|
T Consensus 135 ~~~~~~~~~~-------~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 135 QGPKRSEKLV-------KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATN 206 (312)
T ss_dssp STTT--HHHH-------HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH-----
T ss_pred cCCccccchH-------HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhccc
Confidence 7665433211 1466777766654 456788999999999975 568889999999999999999
Q ss_pred c-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhcc-CCHHHHHHHHHHHHHHHccCCCCc
Q 010080 396 S-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHE 473 (518)
Q Consensus 396 ~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d~~~~~~~l~~l~~il~~~~~~~ 473 (518)
. .....++.+++.+++-++.. .+.+..+.+.++++.|++++.. ...+++++++.++.|++...+..
T Consensus 207 ~~~~~~Ql~Y~~ll~lWlLSF~-----------~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~- 274 (312)
T PF03224_consen 207 SNSSGIQLQYQALLCLWLLSFE-----------PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS- 274 (312)
T ss_dssp ----HHHHHHHHHHHHHHHTTS-----------HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT-
T ss_pred CCCCchhHHHHHHHHHHHHhcC-----------HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH-
Confidence 2 34578999999999999874 3667889999999999999986 56789999999999999765542
Q ss_pred chhHHHhhchHHHHHHHhcC--CCHHHHHHHHHHH
Q 010080 474 GTKLVEREDGIDAMERFQFH--ENEDLRNMANGLV 506 (518)
Q Consensus 474 ~~~~ie~~ggl~~l~~L~~~--~~~~i~~~a~~il 506 (518)
....+-.+|++..++.|+.. .++|+++--..+-
T Consensus 275 ~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 275 NIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34556678999999999755 5888887554443
No 47
>PTZ00429 beta-adaptin; Provisional
Probab=98.90 E-value=4.3e-06 Score=90.57 Aligned_cols=357 Identities=17% Similarity=0.097 Sum_probs=201.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChH
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP 169 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~ 169 (518)
.+...++..+-.|+.++.++.... | +.+.+.|.++.|.++|...+ +.++..|+.+|..|....+.......+.+.
T Consensus 148 ~L~D~~pYVRKtAalai~Kly~~~--p--elv~~~~~~~~L~~LL~D~d-p~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~ 222 (746)
T PTZ00429 148 AVADPDPYVRKTAAMGLGKLFHDD--M--QLFYQQDFKKDLVELLNDNN-PVVASNAAAIVCEVNDYGSEKIESSNEWVN 222 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhC--c--ccccccchHHHHHHHhcCCC-ccHHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 445667777777777777755443 2 12445678888888876443 556677888888887554433333334566
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 010080 170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI 249 (518)
Q Consensus 170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i 249 (518)
.|+..|.. -++=.+-..+.+|....-.+.. . ...++..+...+++.+..+.-.|+.++.++....++ +.+
T Consensus 223 ~Ll~~L~e-~~EW~Qi~IL~lL~~y~P~~~~---e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~----~~~ 292 (746)
T PTZ00429 223 RLVYHLPE-CNEWGQLYILELLAAQRPSDKE---S--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ----ELI 292 (746)
T ss_pred HHHHHhhc-CChHHHHHHHHHHHhcCCCCcH---H--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH----HHH
Confidence 66666654 3444555555566543221111 1 123566777788888999999999999988743211 121
Q ss_pred H--hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhH----H---------------------Hh----cCchH
Q 010080 250 K--VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSL----L---------------------VK----SGVLQ 298 (518)
Q Consensus 250 ~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~----~---------------------~~----~g~~~ 298 (518)
. ....-+.++.++ +.+++++--++..+..|....+..... + .+ ..++.
T Consensus 293 ~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~ 371 (746)
T PTZ00429 293 ERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILK 371 (746)
T ss_pred HHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHH
Confidence 1 112234455553 456677666666665554432211110 0 00 01233
Q ss_pred HHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHH
Q 010080 299 LLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH 378 (518)
Q Consensus 299 ~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~ 378 (518)
.|.++. ...+.++...++++||.++..-+.. . ...+..|+.++..... +..+++-++.+|....++.
T Consensus 372 EL~eYa-~d~D~ef~r~aIrAIg~lA~k~~~~----a-------~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~ 438 (746)
T PTZ00429 372 ELAEYA-SGVDMVFVVEVVRAIASLAIKVDSV----A-------PDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL 438 (746)
T ss_pred HHHHHh-hcCCHHHHHHHHHHHHHHHHhChHH----H-------HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH
Confidence 344444 2456667778888888887543321 1 2466777777765433 4556777788886655442
Q ss_pred HHHHHhCCCHHHHHHHh---cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHH
Q 010080 379 KQLIHSSEALALLLHLL---STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA 455 (518)
Q Consensus 379 ~~~li~~~~i~~Li~lL---~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~ 455 (518)
. +++.|+..+ .-.+++.+...+|.|+..+..- +... ..+..+++-+...++.++
T Consensus 439 ~-------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I-----------~~a~-----~~L~~~i~~f~~E~~~Vq 495 (746)
T PTZ00429 439 L-------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI-----------ENGK-----DIIQRFIDTIMEHEQRVQ 495 (746)
T ss_pred H-------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH-----------hhHH-----HHHHHHHhhhccCCHHHH
Confidence 1 344555433 2356677778899999886421 1111 123333443344667888
Q ss_pred HHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHH-hcCCCHHHHHHHHH
Q 010080 456 RLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFHENEDLRNMANG 504 (518)
Q Consensus 456 ~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L-~~~~~~~i~~~a~~ 504 (518)
...|.+.-.++-..+.. ....+ ...|..+ ....|++|+++|..
T Consensus 496 lqlLta~vKlfl~~p~~-~~~~l-----~~vL~~~t~~~~d~DVRDRA~~ 539 (746)
T PTZ00429 496 LAILSAAVKMFLRDPQG-MEPQL-----NRVLETVTTHSDDPDVRDRAFA 539 (746)
T ss_pred HHHHHHHHHHHhcCcHH-HHHHH-----HHHHHHHHhcCCChhHHHHHHH
Confidence 88888888777554321 11111 1233344 35688899999964
No 48
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.81 E-value=5.9e-07 Score=87.40 Aligned_cols=222 Identities=18% Similarity=0.166 Sum_probs=158.7
Q ss_pred HHHHHHHHHHhcCChHHHHHhc--CChHHHHHhh-cCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC
Q 010080 144 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHL-GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP 220 (518)
Q Consensus 144 ~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL-~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~ 220 (518)
.-|+.||..+..-. +.+.+.+ +++..++..+ ++..+-+++.+.+.|+.-+.. ++.....+...+.|+.|..++++
T Consensus 175 ~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~ 252 (442)
T KOG2759|consen 175 QFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKE 252 (442)
T ss_pred HHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHH
Confidence 44888888888654 4565655 5888888888 555678999999999999998 55666777888999999999996
Q ss_pred C-ChhHHHHHHHHHHHhhcCCCCCchh----hHHHhhchHHHHHHHhc---cCChhHHHHHHHHHHHhhcC---------
Q 010080 221 N-KGSTVRTAAWALSNLIKGPDPKPAT----ELIKVDGLLDAILRHLK---RADEELTTEVAWVVVYLSAL--------- 283 (518)
Q Consensus 221 ~-~~~~~~~a~~~L~nL~~~~~~~~~~----~~i~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~--------- 283 (518)
. ...+.|.++.++.|++........+ ..+.. +-++..++.|. ..|+++..+.-..-..|-..
T Consensus 253 ~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDe 331 (442)
T KOG2759|consen 253 STKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDE 331 (442)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 5 7999999999999999643111111 11122 33444444444 45676666554433322211
Q ss_pred ------------Cc---------hhhhHHHh--cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCC
Q 010080 284 ------------SN---------VATSLLVK--SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG 340 (518)
Q Consensus 284 ------------~~---------~~~~~~~~--~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~ 340 (518)
+| ++...+.+ -.+++.|+.+|..+.++.++.-||.=||..+...+.....+...
T Consensus 332 Y~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~--- 408 (442)
T KOG2759|consen 332 YKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKY--- 408 (442)
T ss_pred HHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHh---
Confidence 11 11222222 24778999999877788999999999999999888877766654
Q ss_pred chhhhHHHHHHHhccChhhhHHHHHHHHHHhccC
Q 010080 341 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 374 (518)
Q Consensus 341 ~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~ 374 (518)
|+=..++++++|+++.||.+|+.++.-|..+
T Consensus 409 ---ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 409 ---GGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred ---chHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 6899999999999999999999998777543
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.9e-07 Score=88.38 Aligned_cols=187 Identities=17% Similarity=0.186 Sum_probs=152.8
Q ss_pred CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhh
Q 010080 265 ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ 344 (518)
Q Consensus 265 ~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~ 344 (518)
.+.+-+..++--|.+++. +-++...++..|++..++.++ .+++..++..|.++||..+..++.....+++. |
T Consensus 95 ~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l-~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~------~ 166 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYL-ENSDAELRELAARVIGTAVQNNPKSQEQVIEL------G 166 (342)
T ss_pred CCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHh-cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc------c
Confidence 345667788888888886 445667788899999999988 68899999999999999999998877778865 5
Q ss_pred hHHHHHHHhccChh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--CChhHHHHHHHHHHHhcCCCCCCC
Q 010080 345 VIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGNLCVSPTEGE 421 (518)
Q Consensus 345 ~l~~L~~lL~~~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~eA~~aL~nl~~~~~~~~ 421 (518)
+++.|+.++.+.++ .++..|.++++++...++.....+...+++..|..+|++ .+...+..|+..+..+....
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~---- 242 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED---- 242 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh----
Confidence 99999999987655 788999999999999998888888888889999999988 67888999999999998742
Q ss_pred CCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 422 GKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 422 ~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
......+...|.-..+.++..+.+.++...++.++...+...
T Consensus 243 ------~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 243 ------KSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred ------hhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 122234445677777888888888888888888877776543
No 50
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.78 E-value=1.7e-06 Score=86.79 Aligned_cols=255 Identities=18% Similarity=0.225 Sum_probs=163.7
Q ss_pred HHHHHHHHhcCC-hHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC---C
Q 010080 146 AAWCLTNIAAGK-QEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML---P 220 (518)
Q Consensus 146 A~~~L~nia~~~-~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~---~ 220 (518)
|+.+++.+-.|. ..+...++ .++|.+...+.. +..-+++.++||+|.|+. ...+.+-.+|.+++.++-.. .
T Consensus 386 avmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D-~~l~vk~ttAwc~g~iad---~va~~i~p~~Hl~~~vsa~liGl~ 461 (858)
T COG5215 386 AVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSD-SCLWVKSTTAWCFGAIAD---HVAMIISPCGHLVLEVSASLIGLM 461 (858)
T ss_pred HHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccc-ceeehhhHHHHHHHHHHH---HHHHhcCccccccHHHHHHHhhhh
Confidence 555666665443 34455556 589999998876 678899999999999986 35566667788887775432 3
Q ss_pred CChhHHHHHHHHHHHhhcCCCCCchhh---HHHhhchHHHHHHHhc------cCChhHHHHHHHHHHHhhcCCchhhhHH
Q 010080 221 NKGSTVRTAAWALSNLIKGPDPKPATE---LIKVDGLLDAILRHLK------RADEELTTEVAWVVVYLSALSNVATSLL 291 (518)
Q Consensus 221 ~~~~~~~~a~~~L~nL~~~~~~~~~~~---~i~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~L~~~~~~~~~~~ 291 (518)
+.+.+..+++|+.-||..+- ++..++ .+ ..+.+.++.-|- ..+...+.....+|..|....++....+
T Consensus 462 D~p~~~~ncsw~~~nlv~h~-a~a~~~~~S~l--~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~ 538 (858)
T COG5215 462 DCPFRSINCSWRKENLVDHI-AKAVREVESFL--AKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDI 538 (858)
T ss_pred ccchHHhhhHHHHHhHHHhh-hhhhccccchh--HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHH
Confidence 46788899999999998653 221111 11 233444443322 2344677888888887776544333322
Q ss_pred HhcCchHHHHHHHcc----------CC----CccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh
Q 010080 292 VKSGVLQLLVERLAT----------SN----SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH 357 (518)
Q Consensus 292 ~~~g~~~~Lv~lL~~----------~~----~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~ 357 (518)
+ .|+.......|.. .. -.+++..-+.+|..+.......+..+- ..++..++++|.+.+
T Consensus 539 ~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-------D~lm~Lf~r~les~~ 610 (858)
T COG5215 539 L-AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-------DQLMELFIRILESTK 610 (858)
T ss_pred H-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-------HHHHHHHHHHHhccC
Confidence 1 2333322222210 00 123445556666666544433333332 358889999998875
Q ss_pred h-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 358 R-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 358 ~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
+ .+-.+...+||+++..-.++...-.. .++|.|...|...|..+..-|+..++.++..
T Consensus 611 ~t~~~~dV~~aIsal~~sl~e~Fe~y~~-~fiPyl~~aln~~d~~v~~~avglvgdlant 669 (858)
T COG5215 611 PTTAFGDVYTAISALSTSLEERFEQYAS-KFIPYLTRALNCTDRFVLNSAVGLVGDLANT 669 (858)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 5 56678899999998765454444433 4899999999989999999999999998764
No 51
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.7e-07 Score=96.08 Aligned_cols=329 Identities=17% Similarity=0.221 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhh
Q 010080 96 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHL 175 (518)
Q Consensus 96 ~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL 175 (518)
.+.+..|++..-.-...+.. + +++.|-++.+....+ -++..-.-.-+.|.|.+.++. .+++++.+++=.
T Consensus 27 ~~kr~~a~kkvIa~Mt~G~D-----v--SslF~dvvk~~~T~d-lelKKlvyLYl~nYa~~~P~~---a~~avnt~~kD~ 95 (734)
T KOG1061|consen 27 KEKRKDAVKKVIAYMTVGKD-----V--SSLFPDVVKCMQTRD-LELKKLVYLYLMNYAKGKPDL---AILAVNTFLKDC 95 (734)
T ss_pred hhhHHHHHHHHHhcCccCcc-----h--HhhhHHHHhhcccCC-chHHHHHHHHHHHhhccCchH---HHhhhhhhhccC
Confidence 35666666544333333311 1 678888999888766 334444677888999877643 345677777777
Q ss_pred cCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchH
Q 010080 176 GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLL 255 (518)
Q Consensus 176 ~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l 255 (518)
.+ +++.++.-|+..++.+-.+ .. ..-+..||.+.+++.++.+++.++-+..++-.-+ .+.+...|++
T Consensus 96 ~d-~np~iR~lAlrtm~~l~v~--~i-----~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-----~~~~~~~gl~ 162 (734)
T KOG1061|consen 96 ED-PNPLIRALALRTMGCLRVD--KI-----TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-----PDLVEDSGLV 162 (734)
T ss_pred CC-CCHHHHHHHhhceeeEeeh--HH-----HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-----hhhccccchh
Confidence 66 7899999999999877653 22 2235678999999999999999999999987542 2355578999
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc------------------------------
Q 010080 256 DAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA------------------------------ 305 (518)
Q Consensus 256 ~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~------------------------------ 305 (518)
+.|-.++.+.++.|..+|+.+|..|...+++.....+....+..++..+.
T Consensus 163 ~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~ 242 (734)
T KOG1061|consen 163 DALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICE 242 (734)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHH
Confidence 99999999999999999999999999755421111111111222222221
Q ss_pred ------cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHH
Q 010080 306 ------TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK 379 (518)
Q Consensus 306 ------~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~ 379 (518)
.|.+..+...+..++-+.+...+.....+. ..+-+.++.++.+.. .++.-|..-+.-+....++..
T Consensus 243 r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~-------~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~ 314 (734)
T KOG1061|consen 243 RLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLF-------KKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEIL 314 (734)
T ss_pred HhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHH-------HHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHH
Confidence 122233333333333333222111000000 011122222222222 223222222222222222211
Q ss_pred ----------------------HH---HH-hCC---CHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHH
Q 010080 380 ----------------------QL---IH-SSE---ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEH 430 (518)
Q Consensus 380 ----------------------~~---li-~~~---~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~ 430 (518)
+. +. +++ +++-|...-..-|.+.-++|++||++++... ++
T Consensus 315 ~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~-----------e~ 383 (734)
T KOG1061|consen 315 KVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA-----------EQ 383 (734)
T ss_pred HhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh-----------hh
Confidence 00 11 111 3334444445567888899999999997632 11
Q ss_pred HHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCC
Q 010080 431 LVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNH 472 (518)
Q Consensus 431 ~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~ 472 (518)
..+|++.|++++.-+-..++..+...++.+++.+++.
T Consensus 384 -----~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 384 -----SNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred -----hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 1789999999999877778888888999999988863
No 52
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.76 E-value=4.3e-06 Score=81.57 Aligned_cols=312 Identities=15% Similarity=0.105 Sum_probs=209.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHH------HHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH-hcC-
Q 010080 95 AMQKRVNALRELRRLLSRFEFPPIETA------LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA-LLP- 166 (518)
Q Consensus 95 ~~~~~~~a~~~lr~lls~~~~~~~~~~------i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~-v~~- 166 (518)
.++.....+.-+-.+|+..+... ..+ .+....+.++.+|..+++ -.+..+.|+++-++......... -.+
T Consensus 79 kdd~v~yvL~li~DmLs~d~sr~-~lf~~~a~~~k~~~~~~fl~ll~r~d~-~iv~~~~~Ils~la~~g~~~~~~~e~~~ 156 (442)
T KOG2759|consen 79 KDDTVQYVLTLIDDMLSEDRSRV-DLFHDYAHKLKRTEWLSFLNLLNRQDT-FIVEMSFRILSKLACFGNCKMELSELDV 156 (442)
T ss_pred hHHHHHHHHHHHHHHHhhCchHH-HHHHHHHHhhhccchHHHHHHHhcCCh-HHHHHHHHHHHHHHHhccccccchHHHH
Confidence 35566677788888888765321 111 123347778888876553 23233889999888433221111 111
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCCCCc
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKP 244 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~ 244 (518)
-...|...++++.+.+-...|+.||.-+.. -+++|..+....++..++..+.+. +..++-..+.|++-|..+ |..
T Consensus 157 ~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn--~~~ 233 (442)
T KOG2759|consen 157 YKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN--PHA 233 (442)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC--HHH
Confidence 233455556665667788889999999988 679999999999999999988433 678889999999999865 333
Q ss_pred hhhHHHhhchHHHHHHHhcc-CChhHHHHHHHHHHHhhcCCc------hhhhHHHhcCchHHHHHHHc-cCCCccchhhh
Q 010080 245 ATELIKVDGLLDAILRHLKR-ADEELTTEVAWVVVYLSALSN------VATSLLVKSGVLQLLVERLA-TSNSLQLLIPV 316 (518)
Q Consensus 245 ~~~~i~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~------~~~~~~~~~g~~~~Lv~lL~-~~~~~~v~~~a 316 (518)
. +.+...+.++.|..++.+ ..+.|..-++.++.|+.+..+ +.+..++..++.+.+-.+.. ...++++....
T Consensus 234 a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di 312 (442)
T KOG2759|consen 234 A-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDI 312 (442)
T ss_pred H-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHH
Confidence 3 445566899999999985 456788899999999998553 44456666666555444332 12233332211
Q ss_pred hhh---h----hhhhcCCCcccceeeccCCC---------------------chhhhHHHHHHHhccCh-hhhHHHHHHH
Q 010080 317 LRS---L----GNLVAGDSSTISDVLVPGHG---------------------ITDQVIAVLVKCLKSEH-RVLKKEAAWV 367 (518)
Q Consensus 317 l~~---L----~nl~~~~~~~~~~~i~~G~~---------------------~~~~~l~~L~~lL~~~~-~~i~~~a~~~ 367 (518)
-.. | ..+++.+.... . +..|.. =+-.++..|+.+|..++ |.+.--||.=
T Consensus 313 ~~L~e~L~~svq~LsSFDeY~s-E-l~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~D 390 (442)
T KOG2759|consen 313 EFLTEKLKNSVQDLSSFDEYKS-E-LRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHD 390 (442)
T ss_pred HHHHHHHHHHHHhhccHHHHHH-H-HHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhh
Confidence 111 1 11111111000 0 111110 02367889999997654 8888899999
Q ss_pred HHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 368 LSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 368 Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
|+......|+-...+...|+=..++++|++.|++||.+|..|+--+.
T Consensus 391 Ige~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 391 IGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 99999999999988889999999999999999999999999987664
No 53
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.75 E-value=1.3e-07 Score=93.42 Aligned_cols=229 Identities=18% Similarity=0.200 Sum_probs=155.6
Q ss_pred ChHHHHHhhcCC-CCHHHHHHHHHHHHhhhCCChhhHHHHHh------cCChhHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 010080 167 ALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLS------QGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239 (518)
Q Consensus 167 ~v~~Lv~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~------~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 239 (518)
....++.+|... ++.++....+-.+..+..+++...+.+.. .....++++++.+++..+...++..|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 355555665554 68999999999999999988877776665 23678899999999999999999999998866
Q ss_pred CCCCchhhHHHhhchHHHHHHHhc----cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHH------ccCCC
Q 010080 240 PDPKPATELIKVDGLLDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL------ATSNS 309 (518)
Q Consensus 240 ~~~~~~~~~i~~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL------~~~~~ 309 (518)
..... ... ..+.++.+++.+. +++.+++..++.+|..|.. .+.+...+.+.|+++.+..+| ....+
T Consensus 136 ~~~~~-~~~--~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 136 GPKRS-EKL--VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp TTT---HHH--HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred CCccc-cch--HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence 43322 211 1356677776665 4566788999999999996 667888888999999999998 33344
Q ss_pred ccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc-ChhhhHHHHHHHHHHhccCCHH-HHHHHHhCCC
Q 010080 310 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVE-HKQLIHSSEA 387 (518)
Q Consensus 310 ~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-~~~~i~~~a~~~Lsnl~~~~~~-~~~~li~~~~ 387 (518)
.+++-.++.|+.-++... .....+.. .++++.|..++.. .+.+|.+-+..++.|+....++ .+..++.+|+
T Consensus 212 ~Ql~Y~~ll~lWlLSF~~-~~~~~~~~------~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~ 284 (312)
T PF03224_consen 212 IQLQYQALLCLWLLSFEP-EIAEELNK------KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL 284 (312)
T ss_dssp HHHHHHHHHHHHHHTTSH-HHHHHHHT------TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHHhcCH-HHHHHHhc------cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH
Confidence 556667888888776554 44444443 3599999999965 4679999999999999986544 6777888887
Q ss_pred HHHHHHHhc--CCChhHHHHH
Q 010080 388 LALLLHLLS--TSPFDIKKEV 406 (518)
Q Consensus 388 i~~Li~lL~--~~~~~v~~eA 406 (518)
++.+-.+.. -+|+++....
T Consensus 285 l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 285 LKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHHHHHSS--SSHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHH
Confidence 777666663 3677765543
No 54
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1e-06 Score=84.61 Aligned_cols=185 Identities=15% Similarity=0.192 Sum_probs=149.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChH
Q 010080 92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALP 169 (518)
Q Consensus 92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~ 169 (518)
.+.+++.+..|+..|..++..-+|. ..++..|+++.++.+|++.+ ..+...|+|+|+..+.+++..-..++ |+++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnA--ndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNA--NDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhH--HhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 5678999999999999987765554 56889999999999888654 45655599999999999998888888 6999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC--CChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080 170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDPKPATE 247 (518)
Q Consensus 170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~ 247 (518)
.|+..|.+..+..++..|++|++.+....+.....+...++...|...+++ .+..+++.++..+++|..... ...+
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~--s~~d 247 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK--SDED 247 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh--hhhh
Confidence 999999987778899999999999999999999999999999999999997 578889999999999997642 2233
Q ss_pred HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhh
Q 010080 248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 281 (518)
Q Consensus 248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 281 (518)
++...++...+..+..+.+.++...+.-++..+.
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 4444455566666666667677666665554444
No 55
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=4.7e-06 Score=86.74 Aligned_cols=288 Identities=16% Similarity=0.211 Sum_probs=214.1
Q ss_pred CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCC--
Q 010080 166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPD-- 241 (518)
Q Consensus 166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~-- 241 (518)
..|+.|+.-+.++.-.+-|..|+.+|-.++. .+|..+...| +++|+..|+.+ ++++...+.-++.++.+..+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 3578888888776668889999999998876 7888887775 89999999865 89999999999999987653
Q ss_pred -----CCc--------hhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc-hhhhHHHh-cCchHHHHHHHcc
Q 010080 242 -----PKP--------ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-VATSLLVK-SGVLQLLVERLAT 306 (518)
Q Consensus 242 -----~~~--------~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~~~~~~~-~g~~~~Lv~lL~~ 306 (518)
+.. .-.++...+.+..++..+...|-.|+..+.-.|+.+....+ +..+.++. .-++..|+.+|.
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~- 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR- 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh-
Confidence 110 11234456778888888888899999999999998886544 44455544 457889999994
Q ss_pred CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh----hhhHHHHHHHHHHhccCCHHHHHHH
Q 010080 307 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH----RVLKKEAAWVLSNIAAGSVEHKQLI 382 (518)
Q Consensus 307 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~----~~i~~~a~~~Lsnl~~~~~~~~~~l 382 (518)
+.-..++-.++-.|..++.++. .++.++.. .+++..|+.++..+. --|...|+..+.||...+..+.+.+
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~-~IQKlVAF-----ENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F 250 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNS-SIQKLVAF-----ENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF 250 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCc-hHHHHHHH-----HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence 5566778889999999987764 44444432 478888999986542 2577889999999999888888888
Q ss_pred HhCCCHHHHHHHhcC---CC-----h---hHH--HHHHHHHHHhcCCCCCCCCCchhHHHHHH-HHHhcCchHHHHHhhc
Q 010080 383 HSSEALALLLHLLST---SP-----F---DIK--KEVAYVLGNLCVSPTEGEGKPKLIQEHLV-SLVGRGCLSGFIDLVR 448 (518)
Q Consensus 383 i~~~~i~~Li~lL~~---~~-----~---~v~--~eA~~aL~nl~~~~~~~~~~~~~~~~~~~-~l~~~g~i~~L~~lL~ 448 (518)
.+.+.+|.|..+|.. ++ . +|. ..|+.++.-++.. |++..+..+++ .|.+.+++..||.++-
T Consensus 251 rE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-----~Nt~~~~~q~qk~l~ss~ll~~Lc~il~ 325 (970)
T KOG0946|consen 251 REGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-----GNTSSITHQNQKALVSSHLLDVLCTILM 325 (970)
T ss_pred hccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHcchHHHHHHHHc
Confidence 999999999988843 22 1 122 3566777777653 33434446664 5668899999999988
Q ss_pred cCC--HHHHHHHHHHHHHHHccC
Q 010080 449 SAD--IEAARLGLQFMELVLRGM 469 (518)
Q Consensus 449 ~~d--~~~~~~~l~~l~~il~~~ 469 (518)
+++ .++...++-.+..+.++.
T Consensus 326 ~~~vp~dIltesiitvAevVRgn 348 (970)
T KOG0946|consen 326 HPGVPADILTESIITVAEVVRGN 348 (970)
T ss_pred CCCCcHhHHHHHHHHHHHHHHhc
Confidence 774 456777777777777754
No 56
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.71 E-value=9.5e-06 Score=83.88 Aligned_cols=376 Identities=14% Similarity=0.109 Sum_probs=213.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCChHHHHHhc-CChH
Q 010080 92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPD-EQLLEAAWCLTNIAAGKQEETKALL-PALP 169 (518)
Q Consensus 92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~-~~~~eA~~~L~nia~~~~~~~~~v~-~~v~ 169 (518)
.++.+.-+...+...-+..+.-...-+++-.+...+..++..++.++.. .+.+....++.|--.+ ..+... ..+.
T Consensus 726 kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~---r~kpylpqi~s 802 (1172)
T KOG0213|consen 726 KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG---RVKPYLPQICS 802 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh---ccccchHHHHH
Confidence 3444444444444455544443333344444445555555555433222 1212222222222211 001111 2445
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH--HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC---CCCCc
Q 010080 170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR--NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG---PDPKP 244 (518)
Q Consensus 170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r--~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~---~~~~~ 244 (518)
..+..|.+ ..+.++++|+-.++.|+.--..+. ..+-..|. .|..-|....++++-..+.++..++.. ..-.+
T Consensus 803 tiL~rLnn-ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 803 TILWRLNN-KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHhcC-CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 55667776 789999999999998874111111 11122222 244455566777776666555555432 11111
Q ss_pred hhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080 245 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 245 ~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~ 324 (518)
. ..+++|.|..+|.+....|+.++.-.++.|++..++++..---..++=.|+++|. +-+.+++..|..++|.|+
T Consensus 880 P-----i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk-ahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 880 P-----IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK-AHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred C-----hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHH
Confidence 1 3589999999999999999999999999999987776543322345556777774 445677788888887776
Q ss_pred cCCCcc--c----------------------ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHH
Q 010080 325 AGDSST--I----------------------SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQ 380 (518)
Q Consensus 325 ~~~~~~--~----------------------~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~ 380 (518)
..-..+ . ..+.+.. .-..++|.|++=...+...|+...+.+++.+...-.+...
T Consensus 954 kaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c--~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen 954 KAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETC--GPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred HhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhc--CchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence 321110 0 0111110 1234666666666667778888888888877643222222
Q ss_pred HHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc-------cCCHH
Q 010080 381 LIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-------SADIE 453 (518)
Q Consensus 381 ~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-------~~d~~ 453 (518)
.-+- -+.|.|.+.|.+.|...|.-|+-++.+++.++.. -|+..+++.||+ ...|.
T Consensus 1032 dYiy-av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g-----------------~g~eda~iHLLN~iWpNIle~sPh 1093 (1172)
T KOG0213|consen 1032 DYIY-AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG-----------------TGCEDALIHLLNLIWPNILETSPH 1093 (1172)
T ss_pred hHHH-HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC-----------------cCcHHHHHHHHHHhhhhhcCCChH
Confidence 2222 3789999999999999999999999999886431 234555555554 24566
Q ss_pred HHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080 454 AARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK 508 (518)
Q Consensus 454 ~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~ 508 (518)
++....++++.+-.... ...+ +..+.+=..|+...+++.-..+.+.
T Consensus 1094 viqa~~e~~eg~r~~Lg----~~~~-----~~Y~~QGLFHParkVR~~yw~vyn~ 1139 (1172)
T KOG0213|consen 1094 VIQAFDEAMEGLRVALG----PQAM-----LKYCLQGLFHPARKVRKRYWTVYNS 1139 (1172)
T ss_pred HHHHHHHHHHHHHHHhc----hHHH-----HHHHHHhccCcHHHHHHHHHHHHHh
Confidence 77666666666543221 1111 2233334578888777766555554
No 57
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=7e-06 Score=84.73 Aligned_cols=147 Identities=12% Similarity=0.150 Sum_probs=87.5
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHh--hhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCc
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGN--VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP 244 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~n--la~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~ 244 (518)
.+|.|..++.+.....+...|+.++-. ++...+..-..+ .-++..|--++.++++.+..-++.+++.+... +|.
T Consensus 257 Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~kt-Hp~- 332 (877)
T KOG1059|consen 257 LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT-HPK- 332 (877)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh-CHH-
Confidence 355555555554444555666655432 222111111111 11355666677788899999999999988843 232
Q ss_pred hhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080 245 ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 245 ~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~ 324 (518)
. +...-..++++|.+.|+.++..|+-.|.-+.. .+++..+ ++.|+..+........+...+.-+-.+|
T Consensus 333 ---~--Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 333 ---A--VQAHKDLILRCLDDKDESIRLRALDLLYGMVS--KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred ---H--HHHhHHHHHHHhccCCchhHHHHHHHHHHHhh--hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 2 24566788999999999999999999998885 3344433 4556555543334455555554444455
Q ss_pred cCCCc
Q 010080 325 AGDSS 329 (518)
Q Consensus 325 ~~~~~ 329 (518)
+.+..
T Consensus 401 S~snY 405 (877)
T KOG1059|consen 401 SQSNY 405 (877)
T ss_pred hhhhh
Confidence 54443
No 58
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=3.6e-05 Score=80.34 Aligned_cols=284 Identities=15% Similarity=0.095 Sum_probs=209.5
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCCh--
Q 010080 124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGE-- 199 (518)
Q Consensus 124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~-- 199 (518)
+-.||.|+.-..+..-.+.++.|+..|-.+|. ..+..|. .+++.|+..|.. ..++++...++-++.++....+
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 44688888877765555667889999999984 4555555 589999999876 3578999999999999875331
Q ss_pred --------------hhHH-HHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhH-HHhhchHHHHHHHhc
Q 010080 200 --------------EFRN-VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL-IKVDGLLDAILRHLK 263 (518)
Q Consensus 200 --------------~~r~-~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~-i~~~~~l~~L~~lL~ 263 (518)
.+.+ .+...+.|..|+..+...+-.+++.++-.|+++.+...++ ..+. +....++..|+.+|.
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e-~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE-LQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH-HHHHHHHCchhHHHHHHHHh
Confidence 1222 2445688999999999999999999999999998776433 3443 344568999999999
Q ss_pred cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCC---CccchhhhhhhhhhhhcCCCcccceeeccCCC
Q 010080 264 RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN---SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHG 340 (518)
Q Consensus 264 ~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~---~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~ 340 (518)
+.-+-|+.++...|+.|+.+++...+.+.=.+++..|..++...+ ..-|...|+..|-|+...+....+.+.+
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE---- 252 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE---- 252 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc----
Confidence 888899999999999999976655555555788999999886433 2246778999999999877655444443
Q ss_pred chhhhHHHHHHHhccC---h-----h---h--hHHHHHHHHHHhccC-C----HHHHH-HHHhCCCHHHHHHHhcCC--C
Q 010080 341 ITDQVIAVLVKCLKSE---H-----R---V--LKKEAAWVLSNIAAG-S----VEHKQ-LIHSSEALALLLHLLSTS--P 399 (518)
Q Consensus 341 ~~~~~l~~L~~lL~~~---~-----~---~--i~~~a~~~Lsnl~~~-~----~~~~~-~li~~~~i~~Li~lL~~~--~ 399 (518)
.+.+|.|..+|... + + . =...+..++.-+... + ..+.| .+...+++..|..++.++ .
T Consensus 253 --~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp 330 (970)
T KOG0946|consen 253 --GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVP 330 (970)
T ss_pred --cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCc
Confidence 36899999877431 2 1 1 124566777777652 2 23343 455678999999999775 5
Q ss_pred hhHHHHHHHHHHHhcCCC
Q 010080 400 FDIKKEVAYVLGNLCVSP 417 (518)
Q Consensus 400 ~~v~~eA~~aL~nl~~~~ 417 (518)
.+|+.++.-+++++..+.
T Consensus 331 ~dIltesiitvAevVRgn 348 (970)
T KOG0946|consen 331 ADILTESIITVAEVVRGN 348 (970)
T ss_pred HhHHHHHHHHHHHHHHhc
Confidence 789999999999998753
No 59
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=8.1e-06 Score=84.81 Aligned_cols=276 Identities=17% Similarity=0.195 Sum_probs=178.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH----------
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE---------- 159 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~---------- 159 (518)
..+++|.+.+..|+.+|.++.+.. +.....-....+.+.-+..+++++ +++...|.....++|....+
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~Ly-Y~~m~~yM~~alfaitl~amks~~-deValQaiEFWsticeEEiD~~~e~~e~~d 302 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLY-YEFMEPYMEQALFAITLAAMKSDN-DEVALQAIEFWSTICEEEIDLAIEYGEAVD 302 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346889999999999999988864 223333344556666666667554 55666676666666642211
Q ss_pred -----H-----HHHhcCChHHHHHhhcCC------CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCCh
Q 010080 160 -----E-----TKALLPALPLLIAHLGEK------SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG 223 (518)
Q Consensus 160 -----~-----~~~v~~~v~~Lv~lL~~~------~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~ 223 (518)
. +.++-+.+|.|+.+|... ++......|.-||.-++. -+++.++. .++|.+=.-+++++.
T Consensus 303 ~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~---~~~D~Iv~-~Vl~Fiee~i~~pdw 378 (859)
T KOG1241|consen 303 QGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ---CVGDDIVP-HVLPFIEENIQNPDW 378 (859)
T ss_pred cCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---Hhcccchh-hhHHHHHHhcCCcch
Confidence 0 111114789999998762 123455555555555543 22233333 345555556668888
Q ss_pred hHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchh-hhHHHhcCchHHHHH
Q 010080 224 STVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA-TSLLVKSGVLQLLVE 302 (518)
Q Consensus 224 ~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~-~~~~~~~g~~~~Lv~ 302 (518)
.-+..++.++..+-.++++.....+ +.+++|.+++++.++.--++..+.|+|+.+++.-++. .....-.+.++.++.
T Consensus 379 r~reaavmAFGSIl~gp~~~~Lt~i--V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~ 456 (859)
T KOG1241|consen 379 RNREAAVMAFGSILEGPEPDKLTPI--VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE 456 (859)
T ss_pred hhhhHHHHHHHhhhcCCchhhhhHH--HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence 9999999999999988654333333 4699999999999777778899999999999865433 233344567777888
Q ss_pred HHccCCCccchhhhhhhhhhhhcCCC------cccceeeccCCCchhhhHHHHHHHhcc------ChhhhHHHHHHHHHH
Q 010080 303 RLATSNSLQLLIPVLRSLGNLVAGDS------STISDVLVPGHGITDQVIAVLVKCLKS------EHRVLKKEAAWVLSN 370 (518)
Q Consensus 303 lL~~~~~~~v~~~al~~L~nl~~~~~------~~~~~~i~~G~~~~~~~l~~L~~lL~~------~~~~i~~~a~~~Lsn 370 (518)
-|. ..+.+...+||++-+++..-. .+++.+ ..-+.+.+-.|+.. ...++|..|.-+|.-
T Consensus 457 gL~--DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~-------t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmE 527 (859)
T KOG1241|consen 457 GLN--DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA-------TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALME 527 (859)
T ss_pred Hhh--hCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc-------chhHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 773 567888999999999984321 122211 11122233333322 245899999999999
Q ss_pred hccCCHHHHHHH
Q 010080 371 IAAGSVEHKQLI 382 (518)
Q Consensus 371 l~~~~~~~~~~l 382 (518)
+...++..+..+
T Consensus 528 lIk~st~~vy~~ 539 (859)
T KOG1241|consen 528 LIKNSTDDVYPM 539 (859)
T ss_pred HHHcCcHHHHHH
Confidence 998877665544
No 60
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.61 E-value=1.3e-05 Score=80.65 Aligned_cols=352 Identities=15% Similarity=0.153 Sum_probs=204.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH---------
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE--------- 160 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~--------- 160 (518)
..+++|.+.|..|..+|.|+.... +.......+.-+.....+++++.+ +++...|......|+....+.
T Consensus 229 atq~~d~e~q~aafgCl~kim~Ly-Y~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~~~pe 306 (858)
T COG5215 229 ATQGNDEELQHAAFGCLNKIMMLY-YKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDKYLPE 306 (858)
T ss_pred hccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Confidence 346889999999999999987753 233333444455556667777655 444455555444444322111
Q ss_pred ---------HHHhcCChHHHHHhhcCC-CC-------------------------------------------HHHHHHH
Q 010080 161 ---------TKALLPALPLLIAHLGEK-SS-------------------------------------------SPVAEQC 187 (518)
Q Consensus 161 ---------~~~v~~~v~~Lv~lL~~~-~~-------------------------------------------~~v~~~a 187 (518)
+.++.+.+|.|+.+|... ++ ..=++.|
T Consensus 307 ~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaa 386 (858)
T COG5215 307 VPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAA 386 (858)
T ss_pred CchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHH
Confidence 112225789999998651 11 1125666
Q ss_pred HHHHHhhhCCC-hhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc---
Q 010080 188 AWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--- 263 (518)
Q Consensus 188 ~~~L~nla~d~-~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~--- 263 (518)
+-++|.+.... ..++..+ ...++|.+..++..+..-+...++||+..++.+- .+.+...+.++..++-..
T Consensus 387 vmAfGSvm~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v-----a~~i~p~~Hl~~~vsa~liGl 460 (858)
T COG5215 387 VMAFGSVMHGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV-----AMIISPCGHLVLEVSASLIGL 460 (858)
T ss_pred HHHhhhhhcCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH-----HHhcCccccccHHHHHHHhhh
Confidence 66666665432 2333333 3456888888888777788999999999998652 122222344443333222
Q ss_pred cCChhHHHHHHHHHHHhhcCCchhhhH---HHhcCchHHHHHHHc-----cCCCccchhhhhhhhhhhhcCCCcccceee
Q 010080 264 RADEELTTEVAWVVVYLSALSNVATSL---LVKSGVLQLLVERLA-----TSNSLQLLIPVLRSLGNLVAGDSSTISDVL 335 (518)
Q Consensus 264 ~~d~~v~~~a~~~L~~L~~~~~~~~~~---~~~~g~~~~Lv~lL~-----~~~~~~v~~~al~~L~nl~~~~~~~~~~~i 335 (518)
.+.+.+..+++|...+++++-.+.... ++ ...-+.++.-|. ..++...+..+..+||.+....++....++
T Consensus 461 ~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~ 539 (858)
T COG5215 461 MDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL 539 (858)
T ss_pred hccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 345678899999999999753322211 11 111222222221 134556778888899988876654433222
Q ss_pred ccCCCchhhhHHHHHH-----------HhccCh----hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCCh
Q 010080 336 VPGHGITDQVIAVLVK-----------CLKSEH----RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPF 400 (518)
Q Consensus 336 ~~G~~~~~~~l~~L~~-----------lL~~~~----~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~ 400 (518)
.|+...... .+..++ ..++..-|.+|..|.+..+..+..+-+ .++..++++|++.++
T Consensus 540 -------a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~~ 611 (858)
T COG5215 540 -------AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTKP 611 (858)
T ss_pred -------HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccCC
Confidence 133333322 222222 245556666666665543322222222 256778888877654
Q ss_pred h-HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 401 D-IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 401 ~-v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
. +-.++..+|++++...+ ++.. -.-..++|.|..-|+..|..+...+...+..|.+..
T Consensus 612 t~~~~dV~~aIsal~~sl~----------e~Fe-~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl 670 (858)
T COG5215 612 TTAFGDVYTAISALSTSLE----------ERFE-QYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred chhhhHHHHHHHHHHHHHH----------HHHH-HHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 4 55678889999976421 1111 112457899999999999999988888888886544
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=7.4e-05 Score=78.39 Aligned_cols=318 Identities=19% Similarity=0.223 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHH-HHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHH----Hh--cC---
Q 010080 98 KRVNALRELRRLLSRFEFPPIETALKAGAIPV-LVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETK----AL--LP--- 166 (518)
Q Consensus 98 ~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~-Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~----~v--~~--- 166 (518)
...+-+..+|.-+....+++. .....+... .+++|..+.. |.=+.||--++++.- +.+- +. ++
T Consensus 29 vI~kE~a~IRa~ire~~~d~~--~r~rniaKLlYi~MLGypah----FGqieclKLias~~f~dKRiGYLaamLlLdE~q 102 (866)
T KOG1062|consen 29 VIQKECAAIRASIREPTNDPR--KRHRNIAKLLYIHMLGYPAH----FGQIECLKLIASDNFLDKRIGYLAAMLLLDERQ 102 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHHHhCCCcc----chhhHHHHHhcCCCchHHHHHHHHHHHHhccch
Confidence 445566777776666555544 222233332 2455554331 333345555665432 1111 11 11
Q ss_pred -Ch----HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080 167 -AL----PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 167 -~v----~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 241 (518)
.+ ..+.+=|.+ ++.-++..|+.+||||+. .+-+|+ ..|-+-+++++.++.+++.|+.|...+.+. .
T Consensus 103 dvllLltNslknDL~s-~nq~vVglAL~alg~i~s-~Emard------lapeVe~Ll~~~~~~irKKA~Lca~r~irK-~ 173 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNS-SNQYVVGLALCALGNICS-PEMARD------LAPEVERLLQHRDPYIRKKAALCAVRFIRK-V 173 (866)
T ss_pred HHHHHHHHHHHhhccC-CCeeehHHHHHHhhccCC-HHHhHH------hhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-C
Confidence 22 222333444 677889999999999996 333343 357778899999999999999999999864 2
Q ss_pred CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc--------------C
Q 010080 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT--------------S 307 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~--------------~ 307 (518)
|. . ...+++...++|.+.+..|+....-.+..+|..+++......+ +++.+|..|.+ -
T Consensus 174 P~----l--~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi 245 (866)
T KOG1062|consen 174 PD----L--VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGI 245 (866)
T ss_pred ch----H--HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCC
Confidence 32 2 3578888999999999999888888888888876666666654 66777776642 1
Q ss_pred CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh---hhhHHHHHHHHHHhccCCHHHHHHHHh
Q 010080 308 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH---RVLKKEAAWVLSNIAAGSVEHKQLIHS 384 (518)
Q Consensus 308 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~---~~i~~~a~~~Lsnl~~~~~~~~~~li~ 384 (518)
++|-++..++|.|+-+-.++.+..+.+- .++..+..--.+++ ..|-.|+..+|..|-..+ ..+-.
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd~M~--------DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~-~Lrvl--- 313 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASDLMN--------DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNS-GLRVL--- 313 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHHHHH--------HHHHHHHhcccccccchhHHHHHHHHHHHhccCCc-hHHHH---
Confidence 2444566778888877766654433221 12222222111111 255666666666553322 11111
Q ss_pred CCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHH
Q 010080 385 SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMEL 464 (518)
Q Consensus 385 ~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~ 464 (518)
++..|-..|.+.|..+|.-|+-.|....... |.-++.|. ..+++.|+++|+.+...+|+.++.
T Consensus 314 --ainiLgkFL~n~d~NirYvaLn~L~r~V~~d------~~avqrHr---------~tIleCL~DpD~SIkrralELs~~ 376 (866)
T KOG1062|consen 314 --AINILGKFLLNRDNNIRYVALNMLLRVVQQD------PTAVQRHR---------STILECLKDPDVSIKRRALELSYA 376 (866)
T ss_pred --HHHHHHHHhcCCccceeeeehhhHHhhhcCC------cHHHHHHH---------HHHHHHhcCCcHHHHHHHHHHHHH
Confidence 2345555566666666666666666555421 22222221 124555666666666666666666
Q ss_pred HHc
Q 010080 465 VLR 467 (518)
Q Consensus 465 il~ 467 (518)
|..
T Consensus 377 lvn 379 (866)
T KOG1062|consen 377 LVN 379 (866)
T ss_pred Hhc
Confidence 653
No 62
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.52 E-value=1.9e-07 Score=61.83 Aligned_cols=41 Identities=34% Similarity=0.521 Sum_probs=38.3
Q ss_pred CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 375 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 375 ~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
++++++.++++|++|.|+++|++.+.+++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999973
No 63
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=1.6e-05 Score=85.19 Aligned_cols=283 Identities=14% Similarity=0.145 Sum_probs=197.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHh-cCChHHH
Q 010080 94 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKAL-LPALPLL 171 (518)
Q Consensus 94 ~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v-~~~v~~L 171 (518)
+-.+.|+.|....-+.=+.+++||-+ +|..++.|=+ +.-.+.|+-.|..+-.-.+ ..--++ +|+.|+.
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYV 517 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYV 517 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHH
Confidence 55678888888888877778888862 4555555532 1112346666666653322 222222 3899999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-C--ChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080 172 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-N--KGSTVRTAAWALSNLIKGPDPKPATEL 248 (518)
Q Consensus 172 v~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-~--~~~~~~~a~~~L~nL~~~~~~~~~~~~ 248 (518)
++||++ +-.+++---+++-+.|-.-++.+...++..++-...++++.+ + +++-+..++..|+.++++. +.. .+.
T Consensus 518 LKLLQS-~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf-~lG-Q~a 594 (1387)
T KOG1517|consen 518 LKLLQS-SARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF-KLG-QKA 594 (1387)
T ss_pred HHHhcc-chHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc-chh-HHH
Confidence 999998 788999999999998866567888888887777788888876 3 4577889999999999874 232 233
Q ss_pred HHhhchHHHHHHHhccC-ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC-
Q 010080 249 IKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG- 326 (518)
Q Consensus 249 i~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~- 326 (518)
....+.+...+..|+++ .+=++..+|-||+.|-.+.++..=.=...++..+|..+| ..+.++|+..|+.+||.+..+
T Consensus 595 cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L-sD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 595 CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLL-SDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHh-cCccHHHHHHHHHHHHHHhccc
Confidence 34577888888888875 566788999999999875554433334567889999988 478999999999999999875
Q ss_pred ---CCccccee---eccCC--CchhhhHH----HHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHH
Q 010080 327 ---DSSTISDV---LVPGH--GITDQVIA----VLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL 390 (518)
Q Consensus 327 ---~~~~~~~~---i~~G~--~~~~~~l~----~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~ 390 (518)
.++++..+ ++... ..-...+. .++.+++...+-++++..-+++.+..|...+...+......|.
T Consensus 674 ~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~ 749 (1387)
T KOG1517|consen 674 SDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPE 749 (1387)
T ss_pred ccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccc
Confidence 34444322 11000 00012222 5677778889999999999999999988777666554444443
No 64
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.42 E-value=6.3e-05 Score=76.28 Aligned_cols=241 Identities=18% Similarity=0.098 Sum_probs=138.7
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHH
Q 010080 126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL 205 (518)
Q Consensus 126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~ 205 (518)
+++.|+..|..+........+++++. ....+. ++..|+..|.+ .++.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~~-------~~~~L~~~L~d-~~~~vr~aaa~ALg~i~~--------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL--AQEDAL-------DLRSVLAVLQA-GPEGLCAGIQAALGWLGG--------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh--ccCChH-------HHHHHHHHhcC-CCHHHHHHHHHHHhcCCc---------
Confidence 46667777754443444344444442 211111 25667777766 566788888888876543
Q ss_pred HhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc
Q 010080 206 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN 285 (518)
Q Consensus 206 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~ 285 (518)
....+.|+.++.+.++.++..++-++...- ....+.+..+|+++|+.++..++.+|.++...
T Consensus 116 --~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 116 --RQAEPWLEPLLAASEPPGRAIGLAALGAHR--------------HDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred --hHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 124566777777777777776665554411 12234566777777778888888888777641
Q ss_pred hhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHH
Q 010080 286 VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA 365 (518)
Q Consensus 286 ~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~ 365 (518)
..++.|...+ .+.++.|+..|+..++.+- ++ ..+..+..+...........+.
T Consensus 178 ---------~a~~~L~~al-~d~~~~VR~aA~~al~~lG--~~---------------~A~~~l~~~~~~~g~~~~~~l~ 230 (410)
T TIGR02270 178 ---------LSESTLRLYL-RDSDPEVRFAALEAGLLAG--SR---------------LAWGVCRRFQVLEGGPHRQRLL 230 (410)
T ss_pred ---------cchHHHHHHH-cCCCHHHHHHHHHHHHHcC--CH---------------hHHHHHHHHHhccCccHHHHHH
Confidence 3345555555 4677777777777776552 11 2445555544433333333333
Q ss_pred HHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHH
Q 010080 366 WVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFID 445 (518)
Q Consensus 366 ~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~ 445 (518)
-++... +.+ ..++.|..+++... ++..++++++.+- .| ..++.|+.
T Consensus 231 ~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg--------~p-------------~av~~L~~ 276 (410)
T TIGR02270 231 VLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVG--------DV-------------EAAPWCLE 276 (410)
T ss_pred HHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcC--------Cc-------------chHHHHHH
Confidence 333332 222 25666777776644 7777777777662 22 24666666
Q ss_pred hhccCCHHHHHHHHHHHHHHH
Q 010080 446 LVRSADIEAARLGLQFMELVL 466 (518)
Q Consensus 446 lL~~~d~~~~~~~l~~l~~il 466 (518)
.+. |+.+...+-+++..|.
T Consensus 277 ~l~--d~~~aR~A~eA~~~It 295 (410)
T TIGR02270 277 AMR--EPPWARLAGEAFSLIT 295 (410)
T ss_pred Hhc--CcHHHHHHHHHHHHhh
Confidence 664 3336777777777774
No 65
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=8.6e-05 Score=69.76 Aligned_cols=289 Identities=22% Similarity=0.170 Sum_probs=176.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc----CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHH
Q 010080 129 VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL----PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV 204 (518)
Q Consensus 129 ~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~----~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~ 204 (518)
-++.||.+.++ .++..|...+.++.++ ..+.+. -.++.+.+++.. ..+ .++|+.+|.|++. .+..|+.
T Consensus 7 elv~ll~~~sP-~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq-~~~l~~~ 78 (353)
T KOG2973|consen 7 ELVELLHSLSP-PVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQ-KEELRKK 78 (353)
T ss_pred HHHHHhccCCh-HHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHh-hHHHHHH
Confidence 46788887664 4656677777777765 233333 268888898876 333 7899999999999 5688888
Q ss_pred HHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH------hhchHHHHHHHhccCCh--hHHHHHHHH
Q 010080 205 LLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK------VDGLLDAILRHLKRADE--ELTTEVAWV 276 (518)
Q Consensus 205 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~------~~~~l~~L~~lL~~~d~--~v~~~a~~~ 276 (518)
+++. .+..++..+.++...+.+..+..|+||++..+ +...+.. ..+.+.....+..++.. .-....+..
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~--~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDD--EVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCch--HHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 8887 77777788888888899999999999997643 2222111 12233333333333222 224455666
Q ss_pred HHHhhcCCchhhhHHHhcCchH--HHHHHHccCCCccch-hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHh
Q 010080 277 VVYLSALSNVATSLLVKSGVLQ--LLVERLATSNSLQLL-IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL 353 (518)
Q Consensus 277 L~~L~~~~~~~~~~~~~~g~~~--~Lv~lL~~~~~~~v~-~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL 353 (518)
+++|+. .......+.+...++ ++.. + ++.+..++ .-...+|.|++.....+...+ +. ...++|.|+.=+
T Consensus 156 f~nls~-~~~gR~l~~~~k~~p~~kll~-f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL-~e----~~~lLp~iLlPl 227 (353)
T KOG2973|consen 156 FANLSQ-FEAGRKLLLEPKRFPDQKLLP-F-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLL-DE----SINLLPAILLPL 227 (353)
T ss_pred HHHHhh-hhhhhhHhcchhhhhHhhhhc-c-cccchhhhccchHHHHHhhhccchhHHHHh-cc----hHHHHHHHHhhc
Confidence 777776 334455555544332 2222 2 23344444 356677888776654333222 11 123444443322
Q ss_pred ccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc-----CCChhHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 010080 354 KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-----TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ 428 (518)
Q Consensus 354 ~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~-----~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~ 428 (518)
..++ . -+.+.+ . .+|.=+++|. .+++++++.-+.+|.-+|...
T Consensus 228 agpe-e--------------~sEEdm-----~-~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~----------- 275 (353)
T KOG2973|consen 228 AGPE-E--------------LSEEDM-----A-KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR----------- 275 (353)
T ss_pred CCcc-c--------------cCHHHH-----h-cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-----------
Confidence 2221 1 011211 1 2344347774 368899999999999998731
Q ss_pred HHHHHHHhcCchHHHHHhhcc-CCHHHHHHHHHHHHHHHcc
Q 010080 429 EHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 429 ~~~~~l~~~g~i~~L~~lL~~-~d~~~~~~~l~~l~~il~~ 468 (518)
.-.+++.+.|+.+.+-.+=.+ .|+++...+...+..+.+.
T Consensus 276 ~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 276 AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 224778889988887776554 6788888888877777654
No 66
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.37 E-value=5.8e-05 Score=74.44 Aligned_cols=271 Identities=18% Similarity=0.124 Sum_probs=179.1
Q ss_pred HHHcCCHHHHHHHhcCCCChH-HHHHHHHHHHHHhcCChHHHHHhcC-ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC
Q 010080 121 ALKAGAIPVLVQCLAFGSPDE-QLLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 198 (518)
Q Consensus 121 ~i~~g~ip~Lv~~L~~~~~~~-~~~eA~~~L~nia~~~~~~~~~v~~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~ 198 (518)
+-..|.+..|++++..++... +..+|+..|..+... ++++.++. ++..++.+-.....++.+...+.+|+|+-.++
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 445789999999999876544 346899999988753 45666662 34455554444457899999999999999999
Q ss_pred hhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHH
Q 010080 199 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV 278 (518)
Q Consensus 199 ~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~ 278 (518)
.+....++..|++..++--....++.++++++.+|.|++-.......+.++ +..+-+-|..+-.+.|+-++..+|.+.+
T Consensus 254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmv-eKr~~EWLF~LA~skDel~R~~AClAV~ 332 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMV-EKRAAEWLFPLAFSKDELLRLHACLAVA 332 (832)
T ss_pred HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHH-HhhhhhhhhhhhcchHHHHHHHHHHHHh
Confidence 999999999999999998888889999999999999988653323334444 5677777888877888888999999999
Q ss_pred HhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChh
Q 010080 279 YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR 358 (518)
Q Consensus 279 ~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~ 358 (518)
-|+.+. +.-..+..+|.+..+-.++. +-++.- ++....+..+ | ....-+..|+.+|.+...
T Consensus 333 vlat~K-E~E~~VrkS~TlaLVEPlva-~~DP~~----------FARD~hd~aQ-----G--~~~d~LqRLvPlLdS~R~ 393 (832)
T KOG3678|consen 333 VLATNK-EVEREVRKSGTLALVEPLVA-SLDPGR----------FARDAHDYAQ-----G--RGPDDLQRLVPLLDSNRL 393 (832)
T ss_pred hhhhhh-hhhHHHhhccchhhhhhhhh-ccCcch----------hhhhhhhhhc-----c--CChHHHHHhhhhhhcchh
Confidence 999743 34445555665443333332 222211 1111000000 0 123567888889987655
Q ss_pred hhHHHHHHHHHHhccCCHH--HHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010080 359 VLKKEAAWVLSNIAAGSVE--HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL 413 (518)
Q Consensus 359 ~i~~~a~~~Lsnl~~~~~~--~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl 413 (518)
..+--+++-+.-=++-... ..+.+-+-|.|..|-++.++.+.---+-|..+|.-+
T Consensus 394 EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 394 EAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 5454444433322222111 123344668999999999887754444455555444
No 67
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.35 E-value=7.1e-07 Score=59.04 Aligned_cols=41 Identities=29% Similarity=0.590 Sum_probs=38.5
Q ss_pred ChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080 198 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 238 (518)
Q Consensus 198 ~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 238 (518)
+++.++.+++.|++|+|+.+|.+++..+++.++|+|+|||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999984
No 68
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0017 Score=68.58 Aligned_cols=250 Identities=16% Similarity=0.181 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC
Q 010080 143 LLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK 222 (518)
Q Consensus 143 ~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~ 222 (518)
+--|+.+|++|++. +- +-+..|-.-.+|++ .++-|+..|+-|...+....|+.-.. .+++-.++|.+.+
T Consensus 124 VglAL~alg~i~s~--Em---ardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~ 192 (866)
T KOG1062|consen 124 VGLALCALGNICSP--EM---ARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKH 192 (866)
T ss_pred hHHHHHHhhccCCH--HH---hHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcC
Confidence 34588888888852 22 22456777777777 78999999999999998877665433 3344445555444
Q ss_pred hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc---------------cCChhHHHHHHHHHHHhhcCCchh
Q 010080 223 GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK---------------RADEELTTEVAWVVVYLSALSNVA 287 (518)
Q Consensus 223 ~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~---------------~~d~~v~~~a~~~L~~L~~~~~~~ 287 (518)
..+.-..+-.+..+|... +. ..... ...+|.|+..|+ -.||=++..++..|.-|..++.+.
T Consensus 193 hGVL~~~l~l~~e~c~~~-~~-~l~~f--r~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~da 268 (866)
T KOG1062|consen 193 HGVLIAGLHLITELCKIS-PD-ALSYF--RDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADA 268 (866)
T ss_pred CceeeeHHHHHHHHHhcC-HH-HHHHH--HHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccH
Confidence 555544444455555321 11 01111 123333333332 123445555555555555544333
Q ss_pred hhHHHh--------------------cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCC----Cchh
Q 010080 288 TSLLVK--------------------SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH----GITD 343 (518)
Q Consensus 288 ~~~~~~--------------------~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~----~~~~ 343 (518)
.+.|.+ ...+..+..+ .++...+..|..+||.+..+.+..+..+--.+= ..+.
T Consensus 269 Sd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I---~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~ 345 (866)
T KOG1062|consen 269 SDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI---RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDP 345 (866)
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCc
Confidence 332211 1112222221 345667888888889888888777765431100 0011
Q ss_pred hh----HHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080 344 QV----IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 417 (518)
Q Consensus 344 ~~----l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 417 (518)
.+ =..++.+|.+++..||+.|.-.+--|+..+ ++..+ +..|+..|.+.+.+.+...+.-++.++...
T Consensus 346 ~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkf 416 (866)
T KOG1062|consen 346 TAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVRVM-----VKELLEFLESSDEDFKADIASKIAELAEKF 416 (866)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 11 124677888889999999998887776543 44443 456888888889999999999888887753
No 69
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2.2e-06 Score=85.51 Aligned_cols=307 Identities=12% Similarity=0.097 Sum_probs=200.5
Q ss_pred HHHHHHHHHHhcC--ChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC
Q 010080 144 LEAAWCLTNIAAG--KQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 219 (518)
Q Consensus 144 ~eA~~~L~nia~~--~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~ 219 (518)
.-++|++.-.+-. -.-.+..+. +.+..|+++|+. ++..+.-.+...++|........+..++..|+|..|++++.
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence 3467776655532 122233333 478999999987 67778888889999998888899999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCch---hhhHHHhc--
Q 010080 220 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV---ATSLLVKS-- 294 (518)
Q Consensus 220 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~---~~~~~~~~-- 294 (518)
+.+..++.+..|.+..+..+......++.+. .-+...++.+.++++-.++..++-.|.|++.+... ..+..+..
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p 562 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATP 562 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecCh
Confidence 8899999999999999998865555555553 56778888998888889999999999999974322 12222221
Q ss_pred --CchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC---------h--hhhH
Q 010080 295 --GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE---------H--RVLK 361 (518)
Q Consensus 295 --g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~---------~--~~i~ 361 (518)
-..+.|++.+ ...++-...+.|..|-+++..++...+.++. +...+..+..+|... + ..+-
T Consensus 563 ~~ylfk~l~~k~-e~~np~~i~~~~yilv~~aa~d~~l~~~V~~-----q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~ 636 (743)
T COG5369 563 RRYLFKRLIDKY-EENNPMEILEGCYILVRNAACDDTLDYIVQS-----QEDMLDSIFEILDEFAGRTPLSPGSKEEHVL 636 (743)
T ss_pred HHHHHHHHHHHH-HhcCchhhhhhHHHHHHHHhccchHHHHHHh-----HHHHHHHHHHHHHHHcccCCCCCCCCccccc
Confidence 1345566666 3566666778899999999988776666654 445666665555211 0 0111
Q ss_pred HHHHHHHHHhccCCHHHHHHHHhCCCH--HHHHHHhcC----CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 010080 362 KEAAWVLSNIAAGSVEHKQLIHSSEAL--ALLLHLLST----SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV 435 (518)
Q Consensus 362 ~~a~~~Lsnl~~~~~~~~~~li~~~~i--~~Li~lL~~----~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~ 435 (518)
..-..+.-|+....... +.+.. |++= .++. .+.+.--+..|.+.|+.+....+.-+ +...+.++.|+
T Consensus 637 ~p~s~~~v~l~e~~d~f-----~r~~~~~p~~D-~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt-ratveR~~iL~ 709 (743)
T COG5369 637 LPISYTIVNLSENSDKF-----KRLVLTTPHLD-NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT-RATVERIQILC 709 (743)
T ss_pred Cccceeeeccccccccc-----ccceecCCCcc-ccccccCCCchhhhhccceEEEecccCccCCccc-hhhHHHHHHHH
Confidence 11112222222111010 11111 2222 2221 23346677889999976642211111 11137788888
Q ss_pred hcCchHHHHHhhccCCHHHHHHHHHHHHHH
Q 010080 436 GRGCLSGFIDLVRSADIEAARLGLQFMELV 465 (518)
Q Consensus 436 ~~g~i~~L~~lL~~~d~~~~~~~l~~l~~i 465 (518)
..|.-.-+..+.....+.+...+-.+|+++
T Consensus 710 ~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 710 ANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 888888787777777778888888888776
No 70
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.25 E-value=3.7e-05 Score=75.72 Aligned_cols=237 Identities=16% Similarity=0.183 Sum_probs=162.4
Q ss_pred HHhhchHHHHHHHhccCCh--hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC
Q 010080 249 IKVDGLLDAILRHLKRADE--ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 326 (518)
Q Consensus 249 i~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 326 (518)
+...|++..|++++..++- .++..+...|-.+.. .++.+.+...| +..++.+-.....++....++.+|+++..+
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH 252 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence 3456899999999998775 468899999988875 34566666655 444444433334556667889999999999
Q ss_pred CCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080 327 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKE 405 (518)
Q Consensus 327 ~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e 405 (518)
.++..+.++.+ |++..++-.....+|.+.+.++.+|+|++-+ +.+....+++..+-..|.-+..+.|.-+|..
T Consensus 253 Seet~~~Lvaa------~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ 326 (832)
T KOG3678|consen 253 SEETCQRLVAA------GGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLH 326 (832)
T ss_pred hHHHHHHHHhh------cccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHH
Confidence 88888888875 4888888888888899999999999999864 4455566888888888888888888889999
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc-------------------------------hHHHHHhhccCCHHH
Q 010080 406 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC-------------------------------LSGFIDLVRSADIEA 454 (518)
Q Consensus 406 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~-------------------------------i~~L~~lL~~~d~~~ 454 (518)
||.+++-++.+.+ .-..+...|. +.-|+-+|++.-.+.
T Consensus 327 AClAV~vlat~KE-----------~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EA 395 (832)
T KOG3678|consen 327 ACLAVAVLATNKE-----------VEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEA 395 (832)
T ss_pred HHHHHhhhhhhhh-----------hhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhh
Confidence 9999999987532 1111122222 333333443322222
Q ss_pred HHHHHHHHHHHHccCCC--CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 010080 455 ARLGLQFMELVLRGMPN--HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD 507 (518)
Q Consensus 455 ~~~~l~~l~~il~~~~~--~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~ 507 (518)
.++.+++.-++..-. ......+.+.|+++.|.++..++|.--.+.|.+.+.
T Consensus 396 --q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALt 448 (832)
T KOG3678|consen 396 --QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALT 448 (832)
T ss_pred --hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 222223222221100 012467889999999999999888877777766664
No 71
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.24 E-value=0.00019 Score=72.85 Aligned_cols=209 Identities=16% Similarity=0.073 Sum_probs=149.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH
Q 010080 127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL 206 (518)
Q Consensus 127 ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~ 206 (518)
+..|+..|...+ +.+..+++.+|..+-.. .+.+.|+.+|.+ .++.++..++.+++..-.
T Consensus 88 ~~~L~~~L~d~~-~~vr~aaa~ALg~i~~~---------~a~~~L~~~L~~-~~p~vR~aal~al~~r~~---------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGP-EGLCAGIQAALGWLGGR---------QAEPWLEPLLAA-SEPPGRAIGLAALGAHRH---------- 146 (410)
T ss_pred HHHHHHHhcCCC-HHHHHHHHHHHhcCCch---------HHHHHHHHHhcC-CChHHHHHHHHHHHhhcc----------
Confidence 788888887543 44666788887754432 247788899977 789999999988887332
Q ss_pred hcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCch
Q 010080 207 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 286 (518)
Q Consensus 207 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~ 286 (518)
...+++..+|++++..++..++.+|..+... ..+|.|...+.+.+++|+..+.+++..+.. +
T Consensus 147 --~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~- 208 (410)
T TIGR02270 147 --DPGPALEAALTHEDALVRAAALRALGELPRR-------------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R- 208 (410)
T ss_pred --ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H-
Confidence 2356888999999999999999999988632 455667788999999999999999977753 2
Q ss_pred hhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHH
Q 010080 287 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW 366 (518)
Q Consensus 287 ~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~ 366 (518)
+.+..+..+.. .........+..+++.. ++ ..+++.|..++..+. ++..+++
T Consensus 209 --------~A~~~l~~~~~-~~g~~~~~~l~~~lal~--~~---------------~~a~~~L~~ll~d~~--vr~~a~~ 260 (410)
T TIGR02270 209 --------LAWGVCRRFQV-LEGGPHRQRLLVLLAVA--GG---------------PDAQAWLRELLQAAA--TRREALR 260 (410)
T ss_pred --------hHHHHHHHHHh-ccCccHHHHHHHHHHhC--Cc---------------hhHHHHHHHHhcChh--hHHHHHH
Confidence 22344444332 33333333333344332 22 247888999988754 8999999
Q ss_pred HHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 367 VLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 367 ~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
+++.+-.. ..++.|+..+.... ++..|.+++..|+-
T Consensus 261 AlG~lg~p-----------~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 261 AVGLVGDV-----------EAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHcCCc-----------chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 99977432 27888888887654 99999999999864
No 72
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.19 E-value=0.00012 Score=74.50 Aligned_cols=305 Identities=12% Similarity=0.053 Sum_probs=182.8
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhC---CChhhHHHHHhcCChhHHHhhhCCCChhHHHH---HHHHHHHhhcCC
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAG---EGEEFRNVLLSQGALPPLARMMLPNKGSTVRT---AAWALSNLIKGP 240 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~---d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~---a~~~L~nL~~~~ 240 (518)
.|...+.+|.+ ..+.++++|+-..+.|+. .+.+. ..+...|. .|..-|....++++-. |+.++.+..+..
T Consensus 605 ivStiL~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 605 IVSTILKLLRS-KPPDVRIRAADLMGSLAKVLKACGET-KELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 45667778877 678999999998887763 11111 11122222 1333344556666554 444444544443
Q ss_pred CCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhh
Q 010080 241 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 320 (518)
Q Consensus 241 ~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L 320 (518)
.-+|. ..+++|.|..+|.+....+..+....++.++...++++..---..++=.|++.|. +-+.+++..|-.++
T Consensus 681 ~mqpP-----i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk-s~nKeiRR~A~~tf 754 (975)
T COG5181 681 SMQPP-----ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK-SWNKEIRRNATETF 754 (975)
T ss_pred ccCCc-----hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HhhHHHHHhhhhhh
Confidence 32332 3599999999999999999999999999999888776543222345556777774 56677888887777
Q ss_pred hhhhcCCCcc--cc----------------------eeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080 321 GNLVAGDSST--IS----------------------DVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 376 (518)
Q Consensus 321 ~nl~~~~~~~--~~----------------------~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~ 376 (518)
|.|+..-..| .. .+.+.. ..-.++|.|+.=...+...++.....+++.+...-.
T Consensus 755 G~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c--gpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig 832 (975)
T COG5181 755 GCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYC--GPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG 832 (975)
T ss_pred hhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc--CchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH
Confidence 7776422111 00 011100 022455665555556666777777776666643221
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc----cCCH
Q 010080 377 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR----SADI 452 (518)
Q Consensus 377 ~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~----~~d~ 452 (518)
++...-+ +.+.|.|.+.|.+.|+..|.-|.-+|.+++.++... |. ... .-.|+++|- .+.|
T Consensus 833 ~~s~dYv-y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-g~-------eda------~IHLlNllwpNIle~sP 897 (975)
T COG5181 833 QASLDYV-YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-GD-------EDA------AIHLLNLLWPNILEPSP 897 (975)
T ss_pred HHHHHHH-HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-cc-------HHH------HHHHHHHhhhhccCCCc
Confidence 1111111 237899999999999999999999999999876422 21 111 122334332 3567
Q ss_pred HHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 010080 453 EAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD 507 (518)
Q Consensus 453 ~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~ 507 (518)
.++....++++.+......+ .+ ...+.+=..|++..+++.-....+
T Consensus 898 hvi~~~~Eg~e~~~~~lg~g----~~-----m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 898 HVIQSFDEGMESFATVLGSG----AM-----MKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred HHHHHHHHHHHHHHHHhccH----HH-----HHHHHHhccCchHHHHHHHHHHHh
Confidence 77777777777665432211 11 223555568999888876544333
No 73
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=8.2e-05 Score=74.66 Aligned_cols=302 Identities=13% Similarity=0.111 Sum_probs=191.2
Q ss_pred HHHHHH--HhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc
Q 010080 186 QCAWAL--GNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK 263 (518)
Q Consensus 186 ~a~~~L--~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~ 263 (518)
.++|++ -.++......|.-+.+..+.++|+.+|..++.-+.-.++..++|+.-...+ -.+.+...+++..|++++.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn--L~~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN--LGAGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccc--hHHHHHHhhHHHHHHHHhh
Confidence 344544 445554456788888999999999999998877777788888887644322 2344457899999999999
Q ss_pred cCChhHHHHHHHHHHHhhcCCch--hhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC---cccceeeccC
Q 010080 264 RADEELTTEVAWVVVYLSALSNV--ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS---STISDVLVPG 338 (518)
Q Consensus 264 ~~d~~v~~~a~~~L~~L~~~~~~--~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~---~~~~~~i~~G 338 (518)
+.|+.++....|.+.++.-+.+. ..+.+.. -.+..++++. +.+...++..++.++.|+...+. ...+..+...
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lak-ig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~ 561 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAK-IGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT 561 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhhhhhHHh-cCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecC
Confidence 99999999999999999876543 3454544 4468888877 57888999999999999987432 2334444321
Q ss_pred CCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhC-CCHHHHHHHhcC--C---------ChhHHHHH
Q 010080 339 HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLST--S---------PFDIKKEV 406 (518)
Q Consensus 339 ~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~-~~i~~Li~lL~~--~---------~~~v~~eA 406 (518)
. ..-+...|...+...+|-...+.|+.|-++++.+.+..+.+++. .++..+..+|-. + +.++-.--
T Consensus 562 p--~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~ 639 (743)
T COG5369 562 P--RRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPI 639 (743)
T ss_pred h--HHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcc
Confidence 0 11245566667777788777788999999999876666555543 455555555411 1 11122222
Q ss_pred HHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch--HHHHHhhcc---CCHHHHHHHHHHHHHHHccCCCC-------cc
Q 010080 407 AYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL--SGFIDLVRS---ADIEAARLGLQFMELVLRGMPNH-------EG 474 (518)
Q Consensus 407 ~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i--~~L~~lL~~---~d~~~~~~~l~~l~~il~~~~~~-------~~ 474 (518)
..+..++..++ ++- +.+.. |++=.+=+. ++.++.....+.+.++.-.-.+. +.
T Consensus 640 s~~~v~l~e~~---d~f------------~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR 704 (743)
T COG5369 640 SYTIVNLSENS---DKF------------KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVER 704 (743)
T ss_pred ceeeecccccc---ccc------------ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHH
Confidence 22333332210 010 11111 222222111 22345555566666654221111 12
Q ss_pred hhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080 475 TKLVEREDGIDAMERFQFHENEDLRNMANGLVDK 508 (518)
Q Consensus 475 ~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~ 508 (518)
++.+.+.|.-+-+..+|.|+++.+++++...+..
T Consensus 705 ~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~ 738 (743)
T COG5369 705 IQILCANGIREWLVKIQAKDSLIVREKIGTALEN 738 (743)
T ss_pred HHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 3455566777788999999999999999888763
No 74
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.15 E-value=4.4e-06 Score=59.25 Aligned_cols=55 Identities=33% Similarity=0.496 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010080 358 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL 413 (518)
Q Consensus 358 ~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl 413 (518)
+.+|..|+|+|++++.+.++..+.... .++|.|+.+|++++..||..|+|+|+||
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998888887777554 4999999999999999999999999985
No 75
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.0012 Score=70.81 Aligned_cols=168 Identities=16% Similarity=0.131 Sum_probs=127.6
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHH
Q 010080 91 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPL 170 (518)
Q Consensus 91 ~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~ 170 (518)
+.+++...++.|++.+-...+.+.+- +-+.|-++.+.... +.++.+-.-.-|.+++...++ ..+-+++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dm-------ssLf~dViK~~~tr-d~ElKrL~ylYl~~yak~~P~---~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDM-------SSLFPDVIKNVATR-DVELKRLLYLYLERYAKLKPE---LALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhccCHH---HHHHHHHH
Confidence 45677888999997666556655431 33567777777743 466666677788888887773 33446788
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 010080 171 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK 250 (518)
Q Consensus 171 Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~ 250 (518)
+.+=|++ +|+.+|..|+++++.+=. .-+-..+++++.+++.++++.++++|+.|+.++-+-+ .+.+.
T Consensus 97 i~kDl~d-~N~~iR~~AlR~ls~l~~-------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-----~~l~~ 163 (757)
T COG5096 97 IQKDLQD-PNEEIRGFALRTLSLLRV-------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-----KDLYH 163 (757)
T ss_pred HHhhccC-CCHHHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-----Hhhhh
Confidence 8888887 899999999999997643 2223346889999999999999999999999998653 23444
Q ss_pred hhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 251 VDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 251 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
..|.+..+..++.+.|+.+...|+.+|..+..
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 56788888889999999999999999988775
No 76
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.11 E-value=0.00051 Score=68.72 Aligned_cols=186 Identities=24% Similarity=0.297 Sum_probs=142.7
Q ss_pred CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
..++.++.++.+ .+..++..+++.++.+... -++|.+..++.+.+..++..+..+|+.+-
T Consensus 43 ~~~~~~~~~l~~-~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------- 102 (335)
T COG1413 43 EAADELLKLLED-EDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG-------- 102 (335)
T ss_pred hhHHHHHHHHcC-CCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence 367788888987 5899999999998877541 25889999999999999999999777662
Q ss_pred hhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCC----------c--cc
Q 010080 246 TELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS----------L--QL 312 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~----------~--~v 312 (518)
....+|.|+.++. +++..++..+.|+|..+-+. ..+..++..+. +.. . .+
T Consensus 103 -----~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~-~~~~~~a~~~~~~~~~~~ 165 (335)
T COG1413 103 -----DPEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQ-DEDSGSAAAALDAALLDV 165 (335)
T ss_pred -----ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhc-cchhhhhhhhccchHHHH
Confidence 1256778888888 58889999999999988752 22555666663 222 1 24
Q ss_pred hhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHH
Q 010080 313 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL 392 (518)
Q Consensus 313 ~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li 392 (518)
+..+...++.+-. ...++.+...+.+....+|..|..+|+.+.... ..+.+.+.
T Consensus 166 r~~a~~~l~~~~~-----------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~ 219 (335)
T COG1413 166 RAAAAEALGELGD-----------------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLV 219 (335)
T ss_pred HHHHHHHHHHcCC-----------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHH
Confidence 5556666665431 247888999999999999999999999997654 33667888
Q ss_pred HHhcCCChhHHHHHHHHHHHhc
Q 010080 393 HLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 393 ~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
..+.+.+..++..++.+++.+-
T Consensus 220 ~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 220 KALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred HHhcCCCHHHHHHHHHHhcccC
Confidence 9999999999999999998873
No 77
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00035 Score=72.55 Aligned_cols=218 Identities=16% Similarity=0.147 Sum_probs=158.4
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
.-+-++.+|++ +.+=++..|+..+..+.-..|+ .+. ..+|.|..-|..+++.++..|+..++.|++. +|+.+.
T Consensus 145 La~Dv~tLL~s-skpYvRKkAIl~lykvFLkYPe---Alr--~~FprL~EkLeDpDp~V~SAAV~VICELArK-nPknyL 217 (877)
T KOG1059|consen 145 LADDVFTLLNS-SKPYVRKKAILLLYKVFLKYPE---ALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARK-NPQNYL 217 (877)
T ss_pred HHHHHHHHHhc-CchHHHHHHHHHHHHHHHhhhH---hHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhh-CCcccc
Confidence 45567788877 6788999999999998864443 333 2588899999999999999999999999975 566542
Q ss_pred hHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCC-ccchhhhhhhh--hh
Q 010080 247 ELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS-LQLLIPVLRSL--GN 322 (518)
Q Consensus 247 ~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~-~~v~~~al~~L--~n 322 (518)
..-|.+.++|. +.+..++.-.+-.++.|+--.+.-- ..+++.|.+++. +.. ..++-.+..++ ++
T Consensus 218 ------~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~-sT~AmSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 218 ------QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELME-STVAMSLLYECVNTVVAVS 285 (877)
T ss_pred ------cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHH-hhHHHHHHHHHHHHheeeh
Confidence 56688888887 5667888999999999987555322 346778888774 322 11222222222 25
Q ss_pred hhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhH
Q 010080 323 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDI 402 (518)
Q Consensus 323 l~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v 402 (518)
++.|.++....+. =.+..|..++.+.+++++.-++.+++-|....+..+++-. ..++..|.+.|+.+
T Consensus 286 ~s~g~~d~~asiq--------LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~DkD~SI 352 (877)
T KOG1059|consen 286 MSSGMSDHSASIQ--------LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDKDESI 352 (877)
T ss_pred hccCCCCcHHHHH--------HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccCCchh
Confidence 5555433222221 1567788888999999999999999999887777666543 36889999999999
Q ss_pred HHHHHHHHHHhcCC
Q 010080 403 KKEVAYVLGNLCVS 416 (518)
Q Consensus 403 ~~eA~~aL~nl~~~ 416 (518)
|-.|+-.|.-++..
T Consensus 353 RlrALdLl~gmVsk 366 (877)
T KOG1059|consen 353 RLRALDLLYGMVSK 366 (877)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998763
No 78
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.10 E-value=0.0029 Score=66.13 Aligned_cols=380 Identities=14% Similarity=0.177 Sum_probs=210.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCC------ChHHHHHHHHHHHHHhcCChHH
Q 010080 87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS------PDEQLLEAAWCLTNIAAGKQEE 160 (518)
Q Consensus 87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~------~~~~~~eA~~~L~nia~~~~~~ 160 (518)
++..-+|+|.+.+--.+..+.+..+..... ...+...++|-+....-... +..+..+.+-.|.+=....
T Consensus 641 l~rEf~sPDeemkkivLKVv~qcc~t~Gv~--~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~--- 715 (1172)
T KOG0213|consen 641 LIREFGSPDEEMKKIVLKVVKQCCATDGVE--PAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD--- 715 (1172)
T ss_pred HHHhhCCChHHHHHHHHHHHHHHhcccCCC--HHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch---
Confidence 444456777777777777777754444333 34666777776665543110 0111111111111111000
Q ss_pred HHHhcCChHHHHHhhcCCCCHHHH----HHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHH
Q 010080 161 TKALLPALPLLIAHLGEKSSSPVA----EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALS 234 (518)
Q Consensus 161 ~~~v~~~v~~Lv~lL~~~~~~~v~----~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~ 234 (518)
..|...+.-|.+ ++++-+ +.+-.+++++-.-+- +.-++.-.+..++..++.. ...+.-....+++
T Consensus 716 -----~~v~R~v~~lkd-e~e~yrkm~~etv~ri~~~lg~~di---derleE~lidgil~Afqeqtt~d~vml~gfg~V~ 786 (1172)
T KOG0213|consen 716 -----PIVSRVVLDLKD-EPEQYRKMVAETVSRIVGRLGAADI---DERLEERLIDGILYAFQEQTTEDSVMLLGFGTVV 786 (1172)
T ss_pred -----HHHHHHhhhhcc-ccHHHHHHHHHHHHHHHhccccccc---cHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHH
Confidence 134555555655 444444 444445555432111 1112223455555555543 3344555555555
Q ss_pred HhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC--CchhhhHHHhcCchHHHHHHHccCCCccc
Q 010080 235 NLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL--SNVATSLLVKSGVLQLLVERLATSNSLQL 312 (518)
Q Consensus 235 nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v 312 (518)
|-..+. -++. ...++..++..|++..+.++..++-.++.|+.- .-..-+.+-..|+ .|.+.| ....+++
T Consensus 787 ~~lg~r-~kpy-----lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEv 857 (1172)
T KOG0213|consen 787 NALGGR-VKPY-----LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEV 857 (1172)
T ss_pred HHHhhc-cccc-----hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHH
Confidence 533221 1221 246677788899999999999999988888741 0011123323343 366777 4678888
Q ss_pred hhhhhhhhhhhhcCC--CcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHH
Q 010080 313 LIPVLRSLGNLVAGD--SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL 390 (518)
Q Consensus 313 ~~~al~~L~nl~~~~--~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~ 390 (518)
+-..+.+|..|+... ...+.. + .+++|.|..+|.+.+.+|+..+.-.++-|+..+++.+..=--..+---
T Consensus 858 LgsILgAikaI~nvigm~km~pP-i-------~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfe 929 (1172)
T KOG0213|consen 858 LGSILGAIKAIVNVIGMTKMTPP-I-------KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFE 929 (1172)
T ss_pred HHHHHHHHHHHHHhccccccCCC-h-------hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHH
Confidence 776666666655322 112222 2 379999999999999999999999999999877664332111123345
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-----------------------c---CchHHHH
Q 010080 391 LLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG-----------------------R---GCLSGFI 444 (518)
Q Consensus 391 Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~-----------------------~---g~i~~L~ 444 (518)
|+++|++.+..+|+.|.-+++.++..- | | ++....|++ + .++|.|.
T Consensus 930 LlelLkahkK~iRRaa~nTfG~IakaI----G-P---qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalm 1001 (1172)
T KOG0213|consen 930 LLELLKAHKKEIRRAAVNTFGYIAKAI----G-P---QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALM 1001 (1172)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhc----C-H---HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHH
Confidence 788888888899999999988887531 1 3 222333322 1 2466666
Q ss_pred HhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080 445 DLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK 508 (518)
Q Consensus 445 ~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~ 508 (518)
+=...++..++.-+|+++..+++.-.+- ....+ +-....|++-..+.+.--+..|..++.+
T Consensus 1002 neYrtPe~nVQnGVLkalsf~Feyigem-skdYi--yav~PlleDAlmDrD~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 1002 NEYRTPEANVQNGVLKALSFMFEYIGEM-SKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKH 1062 (1172)
T ss_pred hhccCchhHHHHhHHHHHHHHHHHHHHH-hhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHH
Confidence 6666677778888888888887643210 01111 1123344554555555555555555554
No 79
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0012 Score=68.60 Aligned_cols=296 Identities=16% Similarity=0.210 Sum_probs=176.5
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 010080 172 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELI 249 (518)
Q Consensus 172 v~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~i 249 (518)
-+=|.+ .|+....-|+.+++|+-+ .+++..+.. -|| ++|-++ ..-++..++.||..|.+.. |. .+
T Consensus 117 knDL~s-rn~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~s-pD----l~ 183 (938)
T KOG1077|consen 117 KNDLSS-RNPTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKS-PD----LV 183 (938)
T ss_pred Hhhhhc-CCcHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcC-cc----cc
Confidence 333444 577888999999999975 344443322 233 555544 3567888999999998763 32 44
Q ss_pred HhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc----c------------CCCccch
Q 010080 250 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA----T------------SNSLQLL 313 (518)
Q Consensus 250 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~----~------------~~~~~v~ 313 (518)
...+....++++|.+.+-.+...+...+-.|+...++... +.++.-+..|. . -+.+=..
T Consensus 184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-----~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-----TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-----hhHHHHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 4557899999999988888888888888888876554432 22232222221 1 1233345
Q ss_pred hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc----C---hhhhHHHHHHHHHHhccCCHHHHHHHHhCC
Q 010080 314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS----E---HRVLKKEAAWVLSNIAAGSVEHKQLIHSSE 386 (518)
Q Consensus 314 ~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~----~---~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~ 386 (518)
..++|.|.+.-+..|..+..-+ ..++..++...+. . +...+....+-.-|++.+-+..-+.+..
T Consensus 259 vKl~rlLq~~p~~~D~~~r~~l-------~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~-- 329 (938)
T KOG1077|consen 259 VKLLRLLQIYPTPEDPSTRARL-------NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR-- 329 (938)
T ss_pred HHHHHHHHhCCCCCCchHHHHH-------HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--
Confidence 6778888887554444333221 1233333333321 1 1123333344444444432222222222
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc-cCCHHHHHHHHHHHHHH
Q 010080 387 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELV 465 (518)
Q Consensus 387 ~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-~~d~~~~~~~l~~l~~i 465 (518)
.+..|.++|++.+..+|.-|...++.++... .....++.. ...++..|+ ..|..+++.+++.|+.+
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~------------~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~m 396 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASSE------------FSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAM 396 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhcc------------chHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHH
Confidence 4667889999999999999999999998741 112222222 667788888 78999999999999999
Q ss_pred HccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080 466 LRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 512 (518)
Q Consensus 466 l~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~ 512 (518)
+... +...++. +-++.|+..-.+--+|+.-++.-+-|+|-.|
T Consensus 397 cD~~---Nak~IV~--elLqYL~tAd~sireeivlKvAILaEKyAtD 438 (938)
T KOG1077|consen 397 CDVS---NAKQIVA--ELLQYLETADYSIREEIVLKVAILAEKYATD 438 (938)
T ss_pred hchh---hHHHHHH--HHHHHHhhcchHHHHHHHHHHHHHHHHhcCC
Confidence 7542 1223333 3355555433333456666776666666443
No 80
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=0.004 Score=64.23 Aligned_cols=298 Identities=17% Similarity=0.171 Sum_probs=180.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHH-HHHHHHHHhcC-ChHHHHHhcCC
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLE-AAWCLTNIAAG-KQEETKALLPA 167 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~e-A~~~L~nia~~-~~~~~~~v~~~ 167 (518)
.+.+.+...+..|...+..++. +..+...-+.+.+..|..++....+ ...+| ++.+....+.. .+...-.++..
T Consensus 142 ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~~-~~~re~~~~a~~~~~~~Lg~~~EPyiv~~ 217 (569)
T KOG1242|consen 142 LLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKKS-ALNREAALLAFEAAQGNLGPPFEPYIVPI 217 (569)
T ss_pred HhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccch-hhcHHHHHHHHHHHHHhcCCCCCchHHhh
Confidence 3346677777777777766443 2445556677888888888875442 23344 22222222211 11222233356
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 247 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 247 (518)
+|.++.-..+ ....|++.|..+...+..--+.+. ..-.+|+++.-+.........+++-.+..+.... |. ..+
T Consensus 218 lp~il~~~~d-~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~-qLs 290 (569)
T KOG1242|consen 218 LPSILTNFGD-KINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PK-QLS 290 (569)
T ss_pred HHHHHHHhhc-cchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hH-HHH
Confidence 6777766655 567898888887776653211111 1113455554444445566778888888887653 22 222
Q ss_pred HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC-CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC
Q 010080 248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 326 (518)
Q Consensus 248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 326 (518)
. ....++|.+...|.++.++++..+.-++-.++.- ++..++ -.+|.|++.+. +++- ....++..|+.-..
T Consensus 291 ~-~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~-dp~~-~~~e~~~~L~~ttF- 361 (569)
T KOG1242|consen 291 L-CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALA-DPSC-YTPECLDSLGATTF- 361 (569)
T ss_pred H-HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhc-Cccc-chHHHHHhhcceee-
Confidence 2 3468999999999999999999999999888852 122232 34677888774 3331 23445555553221
Q ss_pred CCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC--CHHHHHHHHhCCCHHHHHHHhcCCChhHHH
Q 010080 327 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG--SVEHKQLIHSSEALALLLHLLSTSPFDIKK 404 (518)
Q Consensus 327 ~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~--~~~~~~~li~~~~i~~Li~lL~~~~~~v~~ 404 (518)
+.. ++.- .-.-++|.|.+-+...+..+++.++-++.|++.- ++..+..++.. ++|-|-..+.+..+++|.
T Consensus 362 ----V~~-V~~p--sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~ 433 (569)
T KOG1242|consen 362 ----VAE-VDAP--SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRA 433 (569)
T ss_pred ----eee-ecch--hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHH
Confidence 111 1110 0011345555555556778899999999999974 35555555543 788888888888999999
Q ss_pred HHHHHHHHhcC
Q 010080 405 EVAYVLGNLCV 415 (518)
Q Consensus 405 eA~~aL~nl~~ 415 (518)
.|+.+|+-+..
T Consensus 434 vaarAL~~l~e 444 (569)
T KOG1242|consen 434 VAARALGALLE 444 (569)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 81
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.005 Score=66.72 Aligned_cols=330 Identities=15% Similarity=0.166 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHH-----HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChH
Q 010080 97 QKRVNALRELRRLLSRFEFPPIETAL-----KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALP 169 (518)
Q Consensus 97 ~~~~~a~~~lr~lls~~~~~~~~~~i-----~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~ 169 (518)
+....++.+|+++++..+ -...+. --|..|.+..+|.....+.+|.-|+.++.-+.+..+ +...++ +.+.
T Consensus 1740 ~~v~m~LtAL~Nli~~nP--dlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANP--DLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHhhCc--chhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHH
Confidence 356678999999988754 222222 257888888888865555666667777766666554 444444 5788
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhhcCCC--CCchh
Q 010080 170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPD--PKPAT 246 (518)
Q Consensus 170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~--~~~~~ 246 (518)
.|+++|-+ -+..++.++..|..++. +++.-...+.+|++..++.++... ....+.+++-.|..|...+- |+...
T Consensus 1817 ~LL~lLHS--~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~I 1893 (2235)
T KOG1789|consen 1817 TLLTLLHS--QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTI 1893 (2235)
T ss_pred HHHHHHhc--ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceee
Confidence 88888865 67899999999999998 678888899999999999877644 67778888888888875432 22211
Q ss_pred hHHH---------hhchHHHHHHHhc--cCChhH------HHHHHHHHHHhhc--------CC------chh---h----
Q 010080 247 ELIK---------VDGLLDAILRHLK--RADEEL------TTEVAWVVVYLSA--------LS------NVA---T---- 288 (518)
Q Consensus 247 ~~i~---------~~~~l~~L~~lL~--~~d~~v------~~~a~~~L~~L~~--------~~------~~~---~---- 288 (518)
..+. ..+.....++.+. ++++++ +......+..+.. ++ ++. .
T Consensus 1894 TL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~ 1973 (2235)
T KOG1789|consen 1894 TLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEAD 1973 (2235)
T ss_pred ehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhc
Confidence 1110 0112233444444 233332 1111111221110 00 000 0
Q ss_pred -----------hHHH------------hcCchHHHHHHHccCCCc--cchhhhhhhhhhhhcCCCcccceeeccCCCchh
Q 010080 289 -----------SLLV------------KSGVLQLLVERLATSNSL--QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITD 343 (518)
Q Consensus 289 -----------~~~~------------~~g~~~~Lv~lL~~~~~~--~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~ 343 (518)
..+. -.|.+..+.+++. .+.+ ....-.-.++..+....+.-.+.+=. .
T Consensus 1974 ~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~-~~~peqh~l~lLt~A~V~L~r~hP~LADqip~------L 2046 (2235)
T KOG1789|consen 1974 KECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMS-RPTPEQHELDLLTKAFVELVRHHPNLADQLPS------L 2046 (2235)
T ss_pred cCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhc-CCCcccchhHHHHHHHHHHHHhCcchhhhCCC------c
Confidence 0000 1123344444443 2222 12222222333344444444444432 3
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGK 423 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~ 423 (518)
|.+|.++..+.+.+..+-+.|+.+|..++... -.+.++.....+..++..|+..-. .---|+.+|..+.....
T Consensus 2047 GylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~----- 2119 (2235)
T KOG1789|consen 2047 GYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNT----- 2119 (2235)
T ss_pred cchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHHHHhcch-HHHHHHHHHHHHHHHhH-----
Confidence 68999999999988888899999999998753 455566665666778888766442 23367788877765321
Q ss_pred chhHHHHHHHHHhcCchHHHHHhhccC
Q 010080 424 PKLIQEHLVSLVGRGCLSGFIDLVRSA 450 (518)
Q Consensus 424 ~~~~~~~~~~l~~~g~i~~L~~lL~~~ 450 (518)
.+-+-+.++.|.++.|+.+|++.
T Consensus 2120 ----~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2120 ----GELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred ----HHHHHHHhccCcHHHHHHHhccc
Confidence 25566778999999999999863
No 82
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.04 E-value=2.1e-05 Score=64.73 Aligned_cols=131 Identities=17% Similarity=0.084 Sum_probs=109.4
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 247 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 247 (518)
+..|+.-.+...+.+-+++..--|+|.|. +|.+-..+.+..++...+..|..++..+.+.++..|+|+|-.+ ...+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~---~n~~ 93 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK---TNAK 93 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh---HHHH
Confidence 44455555555789999999999999999 5678889999999999999999999999999999999999653 3456
Q ss_pred HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHH
Q 010080 248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE 302 (518)
Q Consensus 248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~ 302 (518)
.|..++++|.++..+.++.+.++..++.++.+|+.+.....+.+....++..+..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 7778999999999999999999999999999999887767777766655555444
No 83
>PF05536 Neurochondrin: Neurochondrin
Probab=98.04 E-value=0.00029 Score=74.38 Aligned_cols=238 Identities=14% Similarity=0.092 Sum_probs=160.9
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh---hHHHHHhcCChhHHHhhhCC-------CChhHHHHHHHHHHHhh
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE---FRNVLLSQGALPPLARMMLP-------NKGSTVRTAAWALSNLI 237 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~---~r~~~~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~ 237 (518)
+...+.+|++ .+.+=+-.++-.+.+++..++. .+..+.+.=+.+.|-+||.+ +....+.-++..|+.+|
T Consensus 7 l~~c~~lL~~-~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 7 LEKCLSLLKS-ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHhcc-CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4455677776 4466677777778888765543 23456677677888899985 23567788888899999
Q ss_pred cCCCCCchhhHHHhhchHHHHHHHhccCCh-hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhh
Q 010080 238 KGPDPKPATELIKVDGLLDAILRHLKRADE-ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 316 (518)
Q Consensus 238 ~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~a 316 (518)
+.++-....++ -+-+|.|+.++.+.+. ++..+++-+|..++ ..++..+.+++.|.++.|++.+.+ .+.....+
T Consensus 86 ~~~~~a~~~~~---~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A 159 (543)
T PF05536_consen 86 RDPELASSPQM---VSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIA 159 (543)
T ss_pred CChhhhcCHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence 75332223333 3789999999987777 99999999999999 578889999999999999999853 55667889
Q ss_pred hhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHH-HHHHH----hCCCHHHH
Q 010080 317 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH-KQLIH----SSEALALL 391 (518)
Q Consensus 317 l~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~-~~~li----~~~~i~~L 391 (518)
+.++.+++...+...- -+.. ..-..+++.+...+...+...+-++|..|+++....+.. ....- -..+..-+
T Consensus 160 l~lL~~Lls~~~~~~~--~~~~-~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl 236 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSW--AEDS-QLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGL 236 (543)
T ss_pred HHHHHHHHHhcchhhh--hhhH-HHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHH
Confidence 9999998865442110 0000 001245666777777666677888999999998765211 11111 12355566
Q ss_pred HHHhcCC-ChhHHHHHHHHHHHhcC
Q 010080 392 LHLLSTS-PFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 392 i~lL~~~-~~~v~~eA~~aL~nl~~ 415 (518)
..+|++. .+.-|..|....+.+..
T Consensus 237 ~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 237 RDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777664 44555555555555543
No 84
>PF05536 Neurochondrin: Neurochondrin
Probab=98.03 E-value=0.00042 Score=73.23 Aligned_cols=241 Identities=20% Similarity=0.175 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcH--HHHHHcCCHHHHHHHhcCCC-----ChH-HHHHHHHHHH
Q 010080 80 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPI--ETALKAGAIPVLVQCLAFGS-----PDE-QLLEAAWCLT 151 (518)
Q Consensus 80 ~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~--~~~i~~g~ip~Lv~~L~~~~-----~~~-~~~eA~~~L~ 151 (518)
.+++..+++ ++.+-+.++.|+-.+.|++...+.... ..+.++=..+.|-++|.... +.. .+--|+.+|+
T Consensus 6 ~l~~c~~lL---~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 6 SLEKCLSLL---KSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHh---ccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 345555555 477778999999999998876543222 23667666788888887632 122 2233888888
Q ss_pred HHhcCChHH-HHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHH
Q 010080 152 NIAAGKQEE-TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAA 230 (518)
Q Consensus 152 nia~~~~~~-~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~ 230 (518)
.+|....-. -..+++-||.|+..+.++++.++...|..+|..|+. +++-+..+++.|+++.|...+.+ .+...+.+.
T Consensus 83 ~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 83 AFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred HHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 888733211 245568999999999885555999999999999995 88999999999999999999887 455677777
Q ss_pred HHHHHhhcCCCCCchhh-HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchh-hhHHHh----cCchHHHHHHH
Q 010080 231 WALSNLIKGPDPKPATE-LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA-TSLLVK----SGVLQLLVERL 304 (518)
Q Consensus 231 ~~L~nL~~~~~~~~~~~-~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~-~~~~~~----~g~~~~Lv~lL 304 (518)
..+.+++.....+.-.+ .-....+++.+.+.+...........|-.|+.+....+.. ...... ..+...+..+|
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 77777775432111000 0012355666777776666677778888888887654211 111111 12334455556
Q ss_pred ccCCCccchhhhhhhhhhhhc
Q 010080 305 ATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 305 ~~~~~~~v~~~al~~L~nl~~ 325 (518)
.+...+.-+.+++...+.+..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 544556667777777776653
No 85
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.94 E-value=0.0018 Score=65.02 Aligned_cols=237 Identities=17% Similarity=0.158 Sum_probs=169.3
Q ss_pred hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCC-CccchhhhhhhhhhhhcCCCcc
Q 010080 252 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAGDSST 330 (518)
Q Consensus 252 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~~~~~ 330 (518)
....+.+..++-+++.+++..+..++.|+.. +....+.+.+.++--.++.-|.... ...-++.|++.+..+..-.+.
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~- 101 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG- 101 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-
Confidence 3455666656666669999999999999997 4567788888776666666664322 223467899999888765321
Q ss_pred cceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHH
Q 010080 331 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 410 (518)
Q Consensus 331 ~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL 410 (518)
.+. + ..+++..++.+..+.+...+.-|.-+|.-++-.+|+ .+..+|++..|++.+.++..++....+.++
T Consensus 102 ~~~-~------~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l 171 (371)
T PF14664_consen 102 PKE-I------PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTL 171 (371)
T ss_pred ccc-C------CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence 111 1 347999999999999999999999999999987765 467899999999999888878888888999
Q ss_pred HHhcCCCCCCCCCchhHHHHHHHHHhc----CchHHHHHhh---ccCCH--HHHHHHHHHHHHHHccCCCCcchhHHHhh
Q 010080 411 GNLCVSPTEGEGKPKLIQEHLVSLVGR----GCLSGFIDLV---RSADI--EAARLGLQFMELVLRGMPNHEGTKLVERE 481 (518)
Q Consensus 411 ~nl~~~~~~~~~~~~~~~~~~~~l~~~----g~i~~L~~lL---~~~d~--~~~~~~l~~l~~il~~~~~~~~~~~ie~~ 481 (518)
..+...+. ..+++... -++.++.+.- ..++. +-...+-.++..+|+.++.- ........
T Consensus 172 L~lLd~p~-----------tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL-l~l~~~~~ 239 (371)
T PF14664_consen 172 LYLLDSPR-----------TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL-LYLSMNDF 239 (371)
T ss_pred HHHhCCcc-----------hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce-eeeecCCc
Confidence 99987653 12333332 2455555551 11233 45667788899999987641 12223445
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080 482 DGIDAMERFQFHENEDLRNMANGLVDKYFGE 512 (518)
Q Consensus 482 ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~ 512 (518)
.|+..|.+....+++++++....++=..|.-
T Consensus 240 ~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 240 RGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 6888888888999999998877777666543
No 86
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.93 E-value=0.0053 Score=61.35 Aligned_cols=248 Identities=25% Similarity=0.277 Sum_probs=166.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080 81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 160 (518)
Q Consensus 81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~ 160 (518)
++.+.+.+ .+.+...+..|...+..+ -..-++|.+..+|...+ ..++..|+.+|..+-..
T Consensus 45 ~~~~~~~l---~~~~~~vr~~aa~~l~~~------------~~~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~---- 104 (335)
T COG1413 45 ADELLKLL---EDEDLLVRLSAAVALGEL------------GSEEAVPLLRELLSDED-PRVRDAAADALGELGDP---- 104 (335)
T ss_pred HHHHHHHH---cCCCHHHHHHHHHHHhhh------------chHHHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh----
Confidence 34444444 466777888887764431 12346888999998655 44556677766666532
Q ss_pred HHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCCh------------hHHHH
Q 010080 161 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG------------STVRT 228 (518)
Q Consensus 161 ~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~------------~~~~~ 228 (518)
.++|.|+.+|...++..++..|+++|+.+-.. ..+.+++..++.... .++..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 25889999998557899999999999987642 137777777776541 23444
Q ss_pred HHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCC
Q 010080 229 AAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN 308 (518)
Q Consensus 229 a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~ 308 (518)
+.-.+..+- ....++.+..++.+.+..++..+..+|..+.... ..+...+...+ ...
T Consensus 169 a~~~l~~~~-------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~-~~~ 225 (335)
T COG1413 169 AAEALGELG-------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKAL-SDE 225 (335)
T ss_pred HHHHHHHcC-------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHh-cCC
Confidence 444444442 2345677888888888889999999998888633 24456666666 577
Q ss_pred CccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCH
Q 010080 309 SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEAL 388 (518)
Q Consensus 309 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i 388 (518)
+..++..++..+|.+-.. ...+.+...+...+..++..+...+..+ +. ....
T Consensus 226 ~~~vr~~~~~~l~~~~~~-----------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~---------~~~~ 277 (335)
T COG1413 226 SLEVRKAALLALGEIGDE-----------------EAVDALAKALEDEDVILALLAAAALGAL--DL---------AEAA 277 (335)
T ss_pred CHHHHHHHHHHhcccCcc-----------------hhHHHHHHHHhccchHHHHHHHHHhccc--Cc---------hhhH
Confidence 888888888888876422 3677778888877776666555555411 11 1235
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 389 ALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 389 ~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
..+...+.+.+..++.++++++.-+..
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 278 LPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 567777788888888888888877643
No 87
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0035 Score=67.84 Aligned_cols=327 Identities=13% Similarity=0.107 Sum_probs=208.0
Q ss_pred HHHHHHHHhcCChH------HHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC
Q 010080 146 AAWCLTNIAAGKQE------ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 219 (518)
Q Consensus 146 A~~~L~nia~~~~~------~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~ 219 (518)
++.+|.|+.+.+++ ....++|..+.++.+|....+++++.-|+..+.-+.. +.++-..+...|.+..|+.+|.
T Consensus 1745 ~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1745 TLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred HHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHh
Confidence 88999999987773 3345558899999999887888999999998887776 6788899999998888888875
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCC----chhhhHH---
Q 010080 220 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALS----NVATSLL--- 291 (518)
Q Consensus 220 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~----~~~~~~~--- 291 (518)
+ .++.+.-+.-+|+.|+.. ++...+.. ..|++..+..++- +..+..+..++..|+.|.... ...+..+
T Consensus 1824 S-~PS~R~~vL~vLYAL~S~--~~i~keA~-~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1824 S-QPSMRARVLDVLYALSSN--GQIGKEAL-EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred c-ChHHHHHHHHHHHHHhcC--cHHHHHHH-hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence 5 467888889999999865 45556654 4677777776654 566788899999998887532 1111111
Q ss_pred -------HhcCchHHHHHHHc-cCCCccchh-h-----hhhhhhhhhcC--CCcccceeecc------------------
Q 010080 292 -------VKSGVLQLLVERLA-TSNSLQLLI-P-----VLRSLGNLVAG--DSSTISDVLVP------------------ 337 (518)
Q Consensus 292 -------~~~g~~~~Lv~lL~-~~~~~~v~~-~-----al~~L~nl~~~--~~~~~~~~i~~------------------ 337 (518)
+. +.-...|..+. .+.+++... + .-..+..++.. ...|....+++
T Consensus 1900 P~~f~d~~R-D~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1900 PEIFADSLR-DSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred hHHHHHHHh-cCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence 11 11255556553 234444432 1 11122222210 00111111111
Q ss_pred CC------------------CchhhhHHHHHHHhccChh--hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC
Q 010080 338 GH------------------GITDQVIAVLVKCLKSEHR--VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST 397 (518)
Q Consensus 338 G~------------------~~~~~~l~~L~~lL~~~~~--~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~ 397 (518)
|+ .+-.+++..+..++...++ ..-.--..++-.+....|.....+=..|-+|.++..+..
T Consensus 1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~ 2058 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCL 2058 (2235)
T ss_pred chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHh
Confidence 11 1234566666777754443 222222223333444455555556567999999999987
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhH
Q 010080 398 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKL 477 (518)
Q Consensus 398 ~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ 477 (518)
.+..+-+.|..+|-.++.+ .-.++.|....++.+++..+. +.+..+..++++|..++....+. -...
T Consensus 2059 ~n~s~P~SaiRVlH~Lsen-----------~~C~~AMA~l~~i~~~m~~mk-K~~~~~GLA~EalkR~~~r~~~e-LVAQ 2125 (2235)
T KOG1789|consen 2059 QNTSAPRSAIRVLHELSEN-----------QFCCDAMAQLPCIDGIMKSMK-KQPSLMGLAAEALKRLMKRNTGE-LVAQ 2125 (2235)
T ss_pred cCCcCcHHHHHHHHHHhhc-----------cHHHHHHhccccchhhHHHHH-hcchHHHHHHHHHHHHHHHhHHH-HHHH
Confidence 7777778899999999764 245788888889999888775 34566778999999998743221 1122
Q ss_pred HHhhchHHHHHHHh
Q 010080 478 VEREDGIDAMERFQ 491 (518)
Q Consensus 478 ie~~ggl~~l~~L~ 491 (518)
.-.+|-++.|-.|.
T Consensus 2126 ~LK~gLvpyLL~LL 2139 (2235)
T KOG1789|consen 2126 MLKCGLVPYLLQLL 2139 (2235)
T ss_pred HhccCcHHHHHHHh
Confidence 23566666665554
No 88
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.91 E-value=1.7e-05 Score=62.29 Aligned_cols=87 Identities=28% Similarity=0.407 Sum_probs=70.8
Q ss_pred hHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080 297 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 376 (518)
Q Consensus 297 ~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~ 376 (518)
++.|++.|.+++++.++..++++||++- ...+++.|..++.++++.+|..|+++|+.+- +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--~- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------------DPEAIPALIELLKDEDPMVRRAAARALGRIG--D- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--H-
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C-
Confidence 4678888866889999999999999542 1358999999999999999999999999882 2
Q ss_pred HHHHHHHhCCCHHHHHHHhcCC-ChhHHHHHHHHHH
Q 010080 377 EHKQLIHSSEALALLLHLLSTS-PFDIKKEVAYVLG 411 (518)
Q Consensus 377 ~~~~~li~~~~i~~Li~lL~~~-~~~v~~eA~~aL~ 411 (518)
...++.|.+++.+. +..+|..|+++|+
T Consensus 61 --------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23788999999765 5567999999885
No 89
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0035 Score=59.27 Aligned_cols=292 Identities=18% Similarity=0.213 Sum_probs=171.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH-hcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080 169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL-SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 247 (518)
Q Consensus 169 ~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 247 (518)
-.++.+|.+ .++.|+..|+..+.++.+. ..+...- +...++.+.+++...++ .+.|+.++.|++... .. ++
T Consensus 6 ~elv~ll~~-~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l-~~ 77 (353)
T KOG2973|consen 6 VELVELLHS-LSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--EL-RK 77 (353)
T ss_pred HHHHHHhcc-CChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HH-HH
Confidence 356778877 7899999999999998874 2222211 23357778888876655 788999999999653 22 33
Q ss_pred HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh------cCchHHHHHHHccCCCc--cchhhhhhh
Q 010080 248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK------SGVLQLLVERLATSNSL--QLLIPVLRS 319 (518)
Q Consensus 248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~------~g~~~~Lv~lL~~~~~~--~v~~~al~~ 319 (518)
.+.. .++..++..+.++...+...+|..|+|++..++.....+.. .| +..++..+.+++.. .-......+
T Consensus 78 ~ll~-~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~-lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQ-DLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSG-LMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHH-HHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccc-hHHHHHHHhCcccccccchhHHHHH
Confidence 3322 37777777777777788888999999999854433332221 33 34444434322211 112234445
Q ss_pred hhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhH-HHHHHHHHHhccCCHHHHHHHHhC--CCHHHHHHHhc
Q 010080 320 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK-KEAAWVLSNIAAGSVEHKQLIHSS--EALALLLHLLS 396 (518)
Q Consensus 320 L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~-~~a~~~Lsnl~~~~~~~~~~li~~--~~i~~Li~lL~ 396 (518)
+.|++...... ..+++. +.-....+..+-. .+..+| ...+.+|-|++.....+- .+++. +++|.++.=+.
T Consensus 156 f~nls~~~~gR-~l~~~~----k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPla 228 (353)
T KOG2973|consen 156 FANLSQFEAGR-KLLLEP----KRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLA 228 (353)
T ss_pred HHHHhhhhhhh-hHhcch----hhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcC
Confidence 55665443211 112211 1112333444434 444555 457788999987664333 33332 44555544443
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc-----cCCHHHHHHHHHHHHHHHccCCC
Q 010080 397 TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-----SADIEAARLGLQFMELVLRGMPN 471 (518)
Q Consensus 397 ~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-----~~d~~~~~~~l~~l~~il~~~~~ 471 (518)
..+ +.- .+.+ .-+|.=+++|. .+|+.+....+++|..++..
T Consensus 229 gpe-e~s------------------------EEdm------~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--- 274 (353)
T KOG2973|consen 229 GPE-ELS------------------------EEDM------AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--- 274 (353)
T ss_pred Ccc-ccC------------------------HHHH------hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh---
Confidence 322 100 0111 11222225554 47889999999999888743
Q ss_pred CcchhHHHhhchHHHHHHHh-cCCCHHHHHHHHHHHHhhcC
Q 010080 472 HEGTKLVEREDGIDAMERFQ-FHENEDLRNMANGLVDKYFG 511 (518)
Q Consensus 472 ~~~~~~ie~~ggl~~l~~L~-~~~~~~i~~~a~~il~~~f~ 511 (518)
..++..+..-|+...+..|- ..+++++.+.+..+++-.-.
T Consensus 275 ~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 275 RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 24578888889988888774 44788888888777665555
No 90
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.0014 Score=60.57 Aligned_cols=255 Identities=22% Similarity=0.261 Sum_probs=151.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~ 161 (518)
+.+...+.. .+.....++.|+..||.+++... +..+.+....+ ...+..+.+++|+.....
T Consensus 6 ~~i~~~L~~-~s~~l~~r~rALf~Lr~l~~~~~------------i~~i~ka~~d~-s~llkhe~ay~LgQ~~~~----- 66 (289)
T KOG0567|consen 6 ETIGNILVN-KSQPLQNRFRALFNLRNLLGPAA------------IKAITKAFIDD-SALLKHELAYVLGQMQDE----- 66 (289)
T ss_pred HHHHHHHcC-ccHHHHHHHHHHHhhhccCChHH------------HHHHHHhcccc-hhhhccchhhhhhhhccc-----
Confidence 334444432 34556678888888888655432 33333444333 233445677887776643
Q ss_pred HHhcCChHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 010080 162 KALLPALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP 240 (518)
Q Consensus 162 ~~v~~~v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~ 240 (518)
.++|.|+..|.. +..+.|+..|..+||++.. . ..++.+-+..+.+...+.+.+-.++..+-...
T Consensus 67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~~-~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-P----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred ----hhhHHHHHHhcccccchHHHHHHHHHHHhhcc-h----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence 258888887754 2457788899999998762 1 23555556665556666666666665544211
Q ss_pred --------------CCCchhhHHHhhchHHHHHHHhccCChhH--HHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHH
Q 010080 241 --------------DPKPATELIKVDGLLDAILRHLKRADEEL--TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL 304 (518)
Q Consensus 241 --------------~~~~~~~~i~~~~~l~~L~~lL~~~d~~v--~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL 304 (518)
+|.+. . ..+-+.-|-..|.+..... +..+.+.|.++- .++. +..+++-|
T Consensus 132 ~~~~~~~~~p~~SvdPa~p--~--~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Eea---------I~al~~~l 196 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPP--A--NLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEEA---------INALIDGL 196 (289)
T ss_pred ccccccccCccccCCCCCc--c--ccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHHH---------HHHHHHhc
Confidence 12211 0 1122333443343333322 223444444332 2222 34445555
Q ss_pred ccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc--ChhhhHHHHHHHHHHhccCCHHHHHHH
Q 010080 305 ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLI 382 (518)
Q Consensus 305 ~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~--~~~~i~~~a~~~Lsnl~~~~~~~~~~l 382 (518)
. .++.-.+..+..++|.+-.. ..+|.|...|.. +++.+|.+|+.+|+.|+.. +
T Consensus 197 ~-~~SalfrhEvAfVfGQl~s~-----------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~----- 251 (289)
T KOG0567|consen 197 A-DDSALFRHEVAFVFGQLQSP-----------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D----- 251 (289)
T ss_pred c-cchHHHHHHHHHHHhhccch-----------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H-----
Confidence 3 45666778888999976422 378888888854 5789999999999999642 2
Q ss_pred HhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 383 HSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 383 i~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
.++.|.+.+.+.+.-|++.+..+|.-+-
T Consensus 252 ----~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 252 ----CVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred ----HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888876653
No 91
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0035 Score=66.11 Aligned_cols=289 Identities=17% Similarity=0.182 Sum_probs=181.3
Q ss_pred HHHHHHHhc---CCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHH
Q 010080 127 IPVLVQCLA---FGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 203 (518)
Q Consensus 127 ip~Lv~~L~---~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 203 (518)
.|..+-.++ .+-.+-+...|+.+|..+-+-.+++...++..|. .+|.. ..+-|.-.|+.++--+|-+.-+
T Consensus 141 aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~---~LLaD-~splVvgsAv~AF~evCPerld--- 213 (968)
T KOG1060|consen 141 APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIK---KLLAD-RSPLVVGSAVMAFEEVCPERLD--- 213 (968)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHH---HHhcC-CCCcchhHHHHHHHHhchhHHH---
Confidence 444444443 2334556667999999999888877775544433 44555 5778899999999988864311
Q ss_pred HHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh-----------------------hHHH---hhchHHH
Q 010080 204 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT-----------------------ELIK---VDGLLDA 257 (518)
Q Consensus 204 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~-----------------------~~i~---~~~~l~~ 257 (518)
+-++-...|++++..-+.=-+..+..+|..-|+..-+.|.. .++. ..-++..
T Consensus 214 --LIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~s 291 (968)
T KOG1060|consen 214 --LIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQS 291 (968)
T ss_pred --HhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHh
Confidence 12234556666665332211222233333323321111100 0000 1123344
Q ss_pred HHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeecc
Q 010080 258 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP 337 (518)
Q Consensus 258 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~ 337 (518)
.-.+|.+.++.+...++.++.+++- ... ...+++.|+.+|. .+..++.-+|+.|..++...+.
T Consensus 292 tkpLl~S~n~sVVmA~aql~y~lAP--~~~-----~~~i~kaLvrLLr--s~~~vqyvvL~nIa~~s~~~~~-------- 354 (968)
T KOG1060|consen 292 TKPLLQSRNPSVVMAVAQLFYHLAP--KNQ-----VTKIAKALVRLLR--SNREVQYVVLQNIATISIKRPT-------- 354 (968)
T ss_pred ccHHHhcCCcHHHHHHHhHHHhhCC--HHH-----HHHHHHHHHHHHh--cCCcchhhhHHHHHHHHhcchh--------
Confidence 4456778899999999999999995 222 2355788999885 4556777788888887755431
Q ss_pred CCCchhhhHHHHHHHh-ccChh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 338 GHGITDQVIAVLVKCL-KSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 338 G~~~~~~~l~~L~~lL-~~~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
=+.|++..+. .+.++ .++..=+-+|+||+... ++.. +++-+-...++.+.++-..|+.+|+.++.
T Consensus 355 ------lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~es--ni~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~ 421 (968)
T KOG1060|consen 355 ------LFEPHLKSFFVRSSDPTQVKILKLEILSNLANES--NISE-----ILRELQTYIKSSDRSFAAAAVKAIGRCAS 421 (968)
T ss_pred ------hhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc--cHHH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 1567777765 34444 66677778899997543 2222 46677888888888888889999998876
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 416 SPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
.. + =+...|+..|+.+|.+.|..++..+.-.|..++...
T Consensus 422 ~~----~-----------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 422 RI----G-----------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred hh----C-----------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 32 1 123457888999999998888888877788877543
No 92
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0026 Score=64.62 Aligned_cols=314 Identities=17% Similarity=0.174 Sum_probs=180.3
Q ss_pred HHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC-ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080 122 LKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE 200 (518)
Q Consensus 122 i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~ 200 (518)
.-.+++|..+.++...+ ..+.+.|+..+.||+..........++ +...+.++... ++..|+.. +..|-.+..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaD-sd~~V~~~-aeLLdRLik---- 153 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSAD-SDQNVRGG-AELLDRLIK---- 153 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcC-CccccccH-HHHHHHHHH----
Confidence 34677888888876443 334566888888888432211111122 44445555444 44445433 233332222
Q ss_pred hHHHHHhcC---ChhHHHhhhC----CCChhHHHHHHHHHHHhhcCCCCCchhhHHH-hhchHHHHHHHhccCChhHHHH
Q 010080 201 FRNVLLSQG---ALPPLARMML----PNKGSTVRTAAWALSNLIKGPDPKPATELIK-VDGLLDAILRHLKRADEELTTE 272 (518)
Q Consensus 201 ~r~~~~~~g---~i~~L~~ll~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~-~~~~l~~L~~lL~~~d~~v~~~ 272 (518)
+.+.+.. -++.++.++. ..++..+.....-|.-|-. .|..+++. ...+++.|.++|.++.++|+..
T Consensus 154 --dIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds----~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~ 227 (675)
T KOG0212|consen 154 --DIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS----VPDLEMISYLPSLLDGLFNMLSDSSDEVRTL 227 (675)
T ss_pred --HhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc----CCcHHHHhcchHHHHHHHHHhcCCcHHHHHH
Confidence 2222221 3555555554 4466666666555555542 23455542 3467788888999999999876
Q ss_pred HHHHHHHhhc---CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHH
Q 010080 273 VAWVVVYLSA---LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349 (518)
Q Consensus 273 a~~~L~~L~~---~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L 349 (518)
+--+++.+.. +++...+ -...++.++.-+ .++++.++..|+.-|..++.-.+...-..+ .|++..+
T Consensus 228 ~~t~l~~fL~eI~s~P~s~d---~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g~~~l~~~-------s~il~~i 296 (675)
T KOG0212|consen 228 TDTLLSEFLAEIRSSPSSMD---YDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPGRDLLLYL-------SGILTAI 296 (675)
T ss_pred HHHHHHHHHHHHhcCccccC---cccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCCcchhhhh-------hhhhhhc
Confidence 6666654442 2232221 124567777777 477888888888878777755443322222 3677777
Q ss_pred HHHhccChhh-hHHHHHHHHHHhcc-CCHHHHHHHHhC-CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchh
Q 010080 350 VKCLKSEHRV-LKKEAAWVLSNIAA-GSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKL 426 (518)
Q Consensus 350 ~~lL~~~~~~-i~~~a~~~Lsnl~~-~~~~~~~~li~~-~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~ 426 (518)
..++.+..+. ++..+.-+-+-+.. .+.+....=++. .++..|...+++...+.|-+|.--|..+-... |.+
T Consensus 297 Lpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~------p~q 370 (675)
T KOG0212|consen 297 LPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA------PGQ 370 (675)
T ss_pred ccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC------cch
Confidence 7777766553 44333322211211 111111111343 36788888899999999999886566654421 211
Q ss_pred HHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080 427 IQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 470 (518)
Q Consensus 427 ~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~ 470 (518)
+ ........+.|..-|.+.+.+++..+|+.+..|+....
T Consensus 371 l-----~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 371 L-----LVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred h-----hhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 1 11244678889999999999999999999999987543
No 93
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.84 E-value=6.5e-05 Score=58.92 Aligned_cols=87 Identities=30% Similarity=0.388 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH
Q 010080 127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL 206 (518)
Q Consensus 127 ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~ 206 (518)
||.|++.|..+.++..+..|+++|+++.. + .++|.|+.++.+ +++.|+..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~-------~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P-------EAIPALIELLKD-EDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H-------HHHHHHHHHHTS-SSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H-------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhC-----------
Confidence 68899999555557777889999995532 1 348999999976 89999999999999983
Q ss_pred hcCChhHHHhhhCCC-ChhHHHHHHHHHH
Q 010080 207 SQGALPPLARMMLPN-KGSTVRTAAWALS 234 (518)
Q Consensus 207 ~~g~i~~L~~ll~~~-~~~~~~~a~~~L~ 234 (518)
....++.|..++.++ +..++..|+++|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 223789999988876 4566888888874
No 94
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.83 E-value=0.0033 Score=63.14 Aligned_cols=309 Identities=17% Similarity=0.144 Sum_probs=181.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCChHHHHHh-cCChHH
Q 010080 93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPD-EQLLEAAWCLTNIAAGKQEETKAL-LPALPL 170 (518)
Q Consensus 93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~-~~~~eA~~~L~nia~~~~~~~~~v-~~~v~~ 170 (518)
+++.+.+..|.+.+|.++.... .+..+.+.++--.++..|..++.. ....+|...+..+..-.. ..+.+ .+.+..
T Consensus 36 ~~~~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~~~~~vvra 112 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDEE--SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKEIPRGVVRA 112 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-CcccCCHHHHHH
Confidence 4558888999999999888764 456677888777788888765433 233458887777763311 11112 156777
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 010080 171 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK 250 (518)
Q Consensus 171 Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~ 250 (518)
++....+ +++.++..|+.+|.-++.-+ .+.+..+|++..|+..+..+..++...+++++..+...+ . .+..+.
T Consensus 113 lvaiae~-~~D~lr~~cletL~El~l~~---P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p--~-tR~yl~ 185 (371)
T PF14664_consen 113 LVAIAEH-EDDRLRRICLETLCELALLN---PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP--R-TRKYLR 185 (371)
T ss_pred HHHHHhC-CchHHHHHHHHHHHHHHhhC---HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc--c-hhhhhc
Confidence 8888877 77899999999999999854 456889999999999887665568899999999998653 2 233332
Q ss_pred hhchHHHHHHHhccC-------Ch--hHHHHHHHHHHHhhcCCchhhhHHHh--cCchHHHHHHHccCCCccchhhhhhh
Q 010080 251 VDGLLDAILRHLKRA-------DE--ELTTEVAWVVVYLSALSNVATSLLVK--SGVLQLLVERLATSNSLQLLIPVLRS 319 (518)
Q Consensus 251 ~~~~l~~L~~lL~~~-------d~--~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~~~~Lv~lL~~~~~~~v~~~al~~ 319 (518)
..--+..+..-+.+. +. +....+..++..+-. +....-.+.. ...++.|+..| ..++++++...+-.
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr-sW~GLl~l~~~~~~~lksLv~~L-~~p~~~ir~~Ildl 263 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR-SWPGLLYLSMNDFRGLKSLVDSL-RLPNPEIRKAILDL 263 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh-cCCceeeeecCCchHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 222244444333221 22 355566666666554 2222222221 24678888888 47777788877777
Q ss_pred hhhhhcCCCcc-cceeeccCCC-chhhhHHHHHHHhc--cChhhhHHHHHHHHHHhccCC-HHHHHHHHhCCCHHHHHHH
Q 010080 320 LGNLVAGDSST-ISDVLVPGHG-ITDQVIAVLVKCLK--SEHRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHL 394 (518)
Q Consensus 320 L~nl~~~~~~~-~~~~i~~G~~-~~~~~l~~L~~lL~--~~~~~i~~~a~~~Lsnl~~~~-~~~~~~li~~~~i~~Li~l 394 (518)
+..+..-.... ..... .|.. ...+-..---++.. .+.......-..--.|+..+. .--...++++|+++.|+++
T Consensus 264 l~dllrik~p~w~~~~~-~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l 342 (371)
T PF14664_consen 264 LFDLLRIKPPSWTESFL-AGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL 342 (371)
T ss_pred HHHHHCCCCCCcccchh-hcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 77666432211 11110 0000 00000000000000 000000000000001221111 1123457799999999999
Q ss_pred hcCC-ChhHHHHHHHHHHHhc
Q 010080 395 LSTS-PFDIKKEVAYVLGNLC 414 (518)
Q Consensus 395 L~~~-~~~v~~eA~~aL~nl~ 414 (518)
..+. +..+.+.|...|+++.
T Consensus 343 i~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 343 IESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HhcCCCchHHHHHHHHHHHHH
Confidence 9776 8889999999988774
No 95
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.82 E-value=0.015 Score=62.71 Aligned_cols=333 Identities=15% Similarity=0.157 Sum_probs=189.3
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc----C--Ch
Q 010080 95 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL----P--AL 168 (518)
Q Consensus 95 ~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~----~--~v 168 (518)
|...--.|+..+.-+.... |..-.-+..-+++.++.+++++- +|-.|..++.++- .+++ . ..
T Consensus 706 dlhvt~~a~~~L~tl~~~~--ps~l~~~~~~iL~~ii~ll~Spl---lqg~al~~~l~~f-------~alV~t~~~~l~y 773 (1233)
T KOG1824|consen 706 DLHVTQLAVAFLTTLAIIQ--PSSLLKISNPILDEIIRLLRSPL---LQGGALSALLLFF-------QALVITKEPDLDY 773 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcc--cHHHHHHhhhhHHHHHHHhhCcc---ccchHHHHHHHHH-------HHHHhcCCCCccH
Confidence 3333345555555544332 33323345668889999998643 3433444433322 1111 1 14
Q ss_pred HHHHHhhcCCC----CHHHHHHHHHHHHhhhC----CChhhHHHHHhcCChhHHHhhhCC--CChhHHHHHHHHHHHhhc
Q 010080 169 PLLIAHLGEKS----SSPVAEQCAWALGNVAG----EGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIK 238 (518)
Q Consensus 169 ~~Lv~lL~~~~----~~~v~~~a~~~L~nla~----d~~~~r~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~ 238 (518)
..++.++..+- ...+-.+|.+.++.++. -.++- .......|+.-+.+ .+..++.-|+.+|..+-+
T Consensus 774 ~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr 848 (1233)
T KOG1824|consen 774 ISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGR 848 (1233)
T ss_pred HHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhcc
Confidence 45666665521 11234444444443321 11100 01122334433333 356778888889999988
Q ss_pred CCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCC-chhhhHHHh------------------------
Q 010080 239 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS-NVATSLLVK------------------------ 293 (518)
Q Consensus 239 ~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~-~~~~~~~~~------------------------ 293 (518)
++...+. .++-..+..-++++++++...|..||+.++.|+ +.+...+.+
T Consensus 849 ~~~~s~~------~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~s 922 (1233)
T KOG1824|consen 849 RKDLSPQ------NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSAS 922 (1233)
T ss_pred CCCCCcc------hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhc
Confidence 8655443 345557888999999999999999999999854 333333321
Q ss_pred ----cCchHHHHHHHccC---CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHH
Q 010080 294 ----SGVLQLLVERLATS---NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW 366 (518)
Q Consensus 294 ----~g~~~~Lv~lL~~~---~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~ 366 (518)
...++.+..+|.++ ...-.+.-+.-|||.++..++ ..++|.|-..+.++.+..|..+..
T Consensus 923 vd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--------------esLlpkL~~~~~S~a~~~rs~vvs 988 (1233)
T KOG1824|consen 923 VDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--------------ESLLPKLKLLLRSEASNTRSSVVS 988 (1233)
T ss_pred cchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--------------HHHHHHHHHHhcCCCcchhhhhhh
Confidence 11122333333211 122234555667777765553 358999999999999988888777
Q ss_pred HHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH----Hhc-CchH
Q 010080 367 VLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL----VGR-GCLS 441 (518)
Q Consensus 367 ~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l----~~~-g~i~ 441 (518)
++-......+.-+..++.. .+...+.+++++|.+||++|+-++...+.+ +|..|.+-...+ .+. .+=+
T Consensus 989 avKfsisd~p~~id~~lk~-~ig~fl~~~~dpDl~VrrvaLvv~nSaahN------KpslIrDllpeLLp~Ly~eTkvrk 1061 (1233)
T KOG1824|consen 989 AVKFSISDQPQPIDPLLKQ-QIGDFLKLLRDPDLEVRRVALVVLNSAAHN------KPSLIRDLLPELLPLLYSETKVRK 1061 (1233)
T ss_pred eeeeeecCCCCccCHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHcc------CHhHHHHHHHHHHHHHHHhhhhhH
Confidence 7766665555555555443 567788899999999999999999988764 454443222221 111 1111
Q ss_pred HHHHhhcc--------CCHHHHHHHHHHHHHHHccCCC
Q 010080 442 GFIDLVRS--------ADIEAARLGLQFMELVLRGMPN 471 (518)
Q Consensus 442 ~L~~lL~~--------~d~~~~~~~l~~l~~il~~~~~ 471 (518)
.++.-.+. ..-++.+.+-++++.+++.+.+
T Consensus 1062 elIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld 1099 (1233)
T KOG1824|consen 1062 ELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLD 1099 (1233)
T ss_pred hhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhh
Confidence 12222221 1235677888889999887654
No 96
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.81 E-value=0.0024 Score=68.50 Aligned_cols=385 Identities=19% Similarity=0.218 Sum_probs=199.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH-HHhc-CChHHH
Q 010080 94 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET-KALL-PALPLL 171 (518)
Q Consensus 94 ~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~-~~v~-~~v~~L 171 (518)
.|.+.+..|+.++-.+++... ...... -..++|.|++-|+.+ .-..-|+.+++.|+...-.-. ..+. .++|.+
T Consensus 582 ~DqeVkeraIscmgq~i~~fg-D~l~~e-L~~~L~il~eRl~nE---iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFG-DFLGNE-LPRTLPILLERLGNE---ITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHh-hhhhhh-hHHHHHHHHHHHhch---hHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 356666666666666655432 111001 134566677766632 223569999999995433222 2333 488888
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhhCCCh-hhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 010080 172 IAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK 250 (518)
Q Consensus 172 v~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~ 250 (518)
..++.. ....++..+.-++-.+..... ......++ -++.-+..++..++..+..++.-+|..+.... ++...-.
T Consensus 657 ~~flrK-~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~---ps~l~~~ 731 (1233)
T KOG1824|consen 657 ASFLRK-NQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLISESDLHVTQLAVAFLTTLAIIQ---PSSLLKI 731 (1233)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc---cHHHHHH
Confidence 888876 445566666666555543111 11111111 13344555666667788888888888888763 2221222
Q ss_pred hhchHHHHHHHhccCChh--HHHH--------------------------------------------HHHHHHHhhcCC
Q 010080 251 VDGLLDAILRHLKRADEE--LTTE--------------------------------------------VAWVVVYLSALS 284 (518)
Q Consensus 251 ~~~~l~~L~~lL~~~d~~--v~~~--------------------------------------------a~~~L~~L~~~~ 284 (518)
...+++.++.+++++--. .... .+.|.+-|+...
T Consensus 732 ~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~ 811 (1233)
T KOG1824|consen 732 SNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCAC 811 (1233)
T ss_pred hhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhc
Confidence 356788888877654210 0000 111111111100
Q ss_pred chhhhHHHhcCchHHHHHHHcc-CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHH
Q 010080 285 NVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE 363 (518)
Q Consensus 285 ~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~ 363 (518)
++. .......|+.-+.+ ..+..++.-|+-.+|.+-.+.+..- ..++...++..+++++..++..
T Consensus 812 ~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----------~~e~~~~iieaf~sp~edvksA 876 (1233)
T KOG1824|consen 812 PQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----------QNELKDTIIEAFNSPSEDVKSA 876 (1233)
T ss_pred ccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----------chhhHHHHHHHcCCChHHHHHH
Confidence 000 00112223322221 2234455667777777765554322 1346667888999999999999
Q ss_pred HHHHHHHhccCCHH-HHHHHHh---C------CCHHHHHHHhcCCChhHHHHHHHHHHHh----cCCCCCCCCCchhHHH
Q 010080 364 AAWVLSNIAAGSVE-HKQLIHS---S------EALALLLHLLSTSPFDIKKEVAYVLGNL----CVSPTEGEGKPKLIQE 429 (518)
Q Consensus 364 a~~~Lsnl~~~~~~-~~~~li~---~------~~i~~Li~lL~~~~~~v~~eA~~aL~nl----~~~~~~~~~~~~~~~~ 429 (518)
|.++||+++.|+-+ +...+.+ . =++-.|-+.+...+.+..+.++.-|+-+ |.+.++ |+-+-+.|
T Consensus 877 As~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~ee--gtR~vvAE 954 (1233)
T KOG1824|consen 877 ASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEE--GTRNVVAE 954 (1233)
T ss_pred HHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchh--hhHHHHHH
Confidence 99999999998633 3222221 1 1233445555444444444443333222 222211 22111123
Q ss_pred HHHHHHh---cCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHH
Q 010080 430 HLVSLVG---RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLV 506 (518)
Q Consensus 430 ~~~~l~~---~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il 506 (518)
.+..|+- ...+|.|-..+.++++.+...++.++...+...+. +-...+... +.....+..+++.++++-|...+
T Consensus 955 CLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~-~id~~lk~~--ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen 955 CLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQ-PIDPLLKQQ--IGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred HhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCC-ccCHHHHHH--HHHHHHHHhCCchhHHHHHHHHH
Confidence 3333331 24677787888888887777777766655432221 111112221 23344456788888888776655
Q ss_pred Hh
Q 010080 507 DK 508 (518)
Q Consensus 507 ~~ 508 (518)
..
T Consensus 1032 nS 1033 (1233)
T KOG1824|consen 1032 NS 1033 (1233)
T ss_pred HH
Confidence 54
No 97
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0039 Score=65.41 Aligned_cols=150 Identities=16% Similarity=0.178 Sum_probs=87.8
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG 422 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~ 422 (518)
|.+--++.+|++++-.+++.+.-..-.|+.. +-+.+-.++...+...--. =+...-+.|..-..+|..++..-
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~F----- 390 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKF----- 390 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcC-----
Confidence 4555566778888888888887766666543 3232222211110000000 00112235666666776665531
Q ss_pred CchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHH
Q 010080 423 KPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMA 502 (518)
Q Consensus 423 ~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a 502 (518)
| + +...+++.|++++.+.++..-..+|.++.-.++..++-. ...++. .++.+-.-.+..+++-|
T Consensus 391 -p----~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-~~ii~~-----l~~~~~~irS~ki~rga 454 (948)
T KOG1058|consen 391 -P----E-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-ASIIEK-----LLETFPQIRSSKICRGA 454 (948)
T ss_pred -h----H-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-HHHHHH-----HHHhhhhhcccccchhH
Confidence 1 1 234578999999999999888888888888877655410 111211 13334444677899999
Q ss_pred HHHHHhhcCccCC
Q 010080 503 NGLVDKYFGEDYG 515 (518)
Q Consensus 503 ~~il~~~f~~~~~ 515 (518)
.+|+-.|...+.+
T Consensus 455 lwi~GeYce~~~~ 467 (948)
T KOG1058|consen 455 LWILGEYCEGLSE 467 (948)
T ss_pred HHHHHHHHhhhHH
Confidence 9999999876653
No 98
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.003 Score=64.17 Aligned_cols=270 Identities=18% Similarity=0.181 Sum_probs=162.3
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC---ChhhH
Q 010080 126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE---GEEFR 202 (518)
Q Consensus 126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d---~~~~r 202 (518)
.||.|-+-+...++..-++-.-|.=.--+...-+-...+-..++.|..+|+. ++.+|+..+-.+|+++-.+ +|..
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD-~s~eVr~~~~t~l~~fL~eI~s~P~s- 245 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD-SSDEVRTLTDTLLSEFLAEIRSSPSS- 245 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHhcCccc-
Confidence 3444444443334444455566654433332222222222477888889987 7889998888777765431 2211
Q ss_pred HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChh-HHHHH---HHHHH
Q 010080 203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEE-LTTEV---AWVVV 278 (518)
Q Consensus 203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~-v~~~a---~~~L~ 278 (518)
+--...++.++..++++++.++..|..-+..+..-..+.. +...++++..++.++.++++. +...+ -..+.
T Consensus 246 --~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~---l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 246 --MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL---LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred --cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch---hhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 1123467888888899999888766555555554321111 223467777788887766653 22222 11233
Q ss_pred HhhcCCchhhhHHHhcC-chHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh
Q 010080 279 YLSALSNVATSLLVKSG-VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH 357 (518)
Q Consensus 279 ~L~~~~~~~~~~~~~~g-~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~ 357 (518)
.+... ....+. ++-| ++..+...| .++..+.+..++.-+.-+-...+.+.-... +.+.+.|..-|+..+
T Consensus 321 ~l~s~-~~~~~~-id~~~ii~vl~~~l-~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~-------~~if~tLL~tLsd~s 390 (675)
T KOG0212|consen 321 KLVSS-ERLKEE-IDYGSIIEVLTKYL-SDDREETRIAVLNWIILLYHKAPGQLLVHN-------DSIFLTLLKTLSDRS 390 (675)
T ss_pred HHHhh-hhhccc-cchHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHhhCcchhhhhc-------cHHHHHHHHhhcCch
Confidence 33321 111111 3433 456666777 477888888888888777766666654443 368899999999998
Q ss_pred hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 358 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 358 ~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
..+...+...+++|+...... .. ..++..|+++......-+...+...+..+|.-
T Consensus 391 d~vvl~~L~lla~i~~s~~~~--~~--~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 391 DEVVLLALSLLASICSSSNSP--NL--RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred hHHHHHHHHHHHHHhcCcccc--cH--HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 899999999999998764221 01 12344566666666666777788888877764
No 99
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.78 E-value=4.9e-05 Score=53.82 Aligned_cols=53 Identities=38% Similarity=0.581 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhh
Q 010080 141 EQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNV 194 (518)
Q Consensus 141 ~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nl 194 (518)
.++..|+|+|++++...++...... ..+|.|+.+|.+ +++.|+..|+|+||+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 3456799999999988888777777 699999999987 6789999999999986
No 100
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.76 E-value=7.3e-05 Score=49.15 Aligned_cols=38 Identities=34% Similarity=0.495 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 377 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 377 ~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
++.+.+++.|++|.|+++|++++.++++.|+|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46778899999999999999999999999999999996
No 101
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0078 Score=57.30 Aligned_cols=322 Identities=15% Similarity=0.135 Sum_probs=191.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHH-HhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080 84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQ-CLAFGSPDEQLLEAAWCLTNIAAGKQEETK 162 (518)
Q Consensus 84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~-~L~~~~~~~~~~eA~~~L~nia~~~~~~~~ 162 (518)
++.++..+...|.+.--.|...+.+ ++..+ .....+.++.....+-- -|....++.........+..|.+-+++...
T Consensus 130 lklildcIggeddeVAkAAiesikr-ialfp-aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesan 207 (524)
T KOG4413|consen 130 LKLILDCIGGEDDEVAKAAIESIKR-IALFP-AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESAN 207 (524)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH-HHhcH-HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHh
Confidence 4455556667777787788888887 45443 22334445554433221 111112233334467778888888888777
Q ss_pred Hhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC--h-hHHHHH---HHHHH
Q 010080 163 ALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK--G-STVRTA---AWALS 234 (518)
Q Consensus 163 ~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~--~-~~~~~a---~~~L~ 234 (518)
.+- |.+..|..-|....+.-|+-.|+.....++. ...-|+++-+.|.|..+.+++...+ + +-.+.. ...++
T Consensus 208 eckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffg 286 (524)
T KOG4413|consen 208 ECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG 286 (524)
T ss_pred HhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc
Confidence 776 7888888888776777888899988888886 5677889999999999999997432 2 112222 22233
Q ss_pred HhhcCCCCCchhhHHHh--hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCc--hHHHHHHHccCCCc
Q 010080 235 NLIKGPDPKPATELIKV--DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV--LQLLVERLATSNSL 310 (518)
Q Consensus 235 nL~~~~~~~~~~~~i~~--~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~--~~~Lv~lL~~~~~~ 310 (518)
+..-.+. ..+.+.. .-++..-..++...|++....+.-+++.|.. +.+..+.+...|- ...++....+.+..
T Consensus 287 keaimdv---seeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 287 KEAIMDV---SEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred chHHhhc---CHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHHHhccCChHHHHHHHHHhccccc
Confidence 3332221 1111110 1233444566778899888888888888876 4456677777663 33444333223333
Q ss_pred cchhhhhhhhhhhhcCC---Cc-ccc---------eeeccCC-CchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080 311 QLLIPVLRSLGNLVAGD---SS-TIS---------DVLVPGH-GITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 376 (518)
Q Consensus 311 ~v~~~al~~L~nl~~~~---~~-~~~---------~~i~~G~-~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~ 376 (518)
.-+..++++|.+|+... ++ +++ .+.++-. .....-+..+..+++.+.+.++-.+..++..|++...
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPW 442 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPW 442 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcH
Confidence 34567888888887442 22 111 0000000 0011234556777888888999999999999988765
Q ss_pred HHHHHHHhCCCHHHHHHHhcCC---ChhHHHHHHHHHHH
Q 010080 377 EHKQLIHSSEALALLLHLLSTS---PFDIKKEVAYVLGN 412 (518)
Q Consensus 377 ~~~~~li~~~~i~~Li~lL~~~---~~~v~~eA~~aL~n 412 (518)
.+...+-..+++....+.-... ..+.+.+++.+|.+
T Consensus 443 alkeifakeefieiVtDastEhaKaakdAkYeccKAiae 481 (524)
T KOG4413|consen 443 ALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE 481 (524)
T ss_pred HHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence 5554454556666655543221 23455556666554
No 102
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.74 E-value=0.00069 Score=55.97 Aligned_cols=113 Identities=20% Similarity=0.102 Sum_probs=88.5
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhh
Q 010080 124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF 201 (518)
Q Consensus 124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~ 201 (518)
.+.+..||.-.+...+.+-+....--|.|+|-+.... ..+. +.+..|+.-|.. ++..+.+.++..|+|+|. .+.+
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Ny-s~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~-d~~n 91 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINY-SHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCL-DKTN 91 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchH-HHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhcc-ChHH
Confidence 3445556655554444444444666677777665433 3333 689999999987 799999999999999999 4688
Q ss_pred HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 010080 202 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239 (518)
Q Consensus 202 r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 239 (518)
...+.+.+++|.++..+.++...+.-.++.++..||.+
T Consensus 92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~ 129 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFG 129 (173)
T ss_pred HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999976
No 103
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=0.00073 Score=72.98 Aligned_cols=238 Identities=16% Similarity=0.168 Sum_probs=165.7
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 247 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 247 (518)
+|..++.|-+ .--+-.|+..|+..---++=..+..+.-|+.|..++||+++..+++...+..-..+..-+ +....+
T Consensus 474 LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~d 549 (1387)
T KOG1517|consen 474 LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQAD 549 (1387)
T ss_pred cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHHH
Confidence 5555555543 234566777788776666777788889999999999999987777665554444443222 334455
Q ss_pred HHHhhchHHHHHHHhcc-C--ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080 248 LIKVDGLLDAILRHLKR-A--DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 248 ~i~~~~~l~~L~~lL~~-~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~ 324 (518)
++. .++-.++++.|.. . ++|-+..++.+|+-++++..-..+...+.+++....+.|.+.+.+-.+.=++-+||.+=
T Consensus 550 LvK-e~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 550 LVK-ENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHh-ccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 554 3444555566654 2 35889999999999999877667777788888888888842223344455777888887
Q ss_pred cCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC----CHHHHHHH------------HhCCCH
Q 010080 325 AGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG----SVEHKQLI------------HSSEAL 388 (518)
Q Consensus 325 ~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~----~~~~~~~l------------i~~~~i 388 (518)
...+...-.-+ ..++...|..+|..+-+.||..|.++|+.+..+ .+++...+ ++..+.
T Consensus 629 ~d~~~Arw~G~------r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~ 702 (1387)
T KOG1517|consen 629 EDYDEARWSGR------RDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII 702 (1387)
T ss_pred hhcchhhhccc------cccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence 66554332222 246889999999999999999999999999875 33433322 232222
Q ss_pred ---HHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 389 ---ALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 389 ---~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
-.++.+++.+.+-+++|.+-+|+.+..+
T Consensus 703 ~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 703 KGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 2677788999999999999999998764
No 104
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.0059 Score=63.05 Aligned_cols=270 Identities=13% Similarity=0.051 Sum_probs=170.6
Q ss_pred CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
...|.+-+.|++..+..+++..+-.-|-++..-.. ....-..++..++.-+..+...+++..+.||.-+.......
T Consensus 55 ~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~--~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~-- 130 (569)
T KOG1242|consen 55 NLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQI--VDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL-- 130 (569)
T ss_pred HHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccc--cCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc--
Confidence 45777778887766677777776666666653221 11122234666677777778899999998888766432211
Q ss_pred hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhh-hhhhh
Q 010080 246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS-LGNLV 324 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~-L~nl~ 324 (518)
....+.+.+.+++..++..-+..+.|.+..+..+. .++.+.+.+++..+...+.+-.+..-+..++.+ ..+..
T Consensus 131 ----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~ 204 (569)
T KOG1242|consen 131 ----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG 204 (569)
T ss_pred ----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH
Confidence 13467788899999888888999999999999754 356666778888888877533333333212211 11111
Q ss_pred cCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHH-HHHHHhCCCHHHHHHHhcCCChhHH
Q 010080 325 AGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH-KQLIHSSEALALLLHLLSTSPFDIK 403 (518)
Q Consensus 325 ~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~-~~~li~~~~i~~Li~lL~~~~~~v~ 403 (518)
.-.....-.++ .++|.++.-+.+..+.+|..|..+.-.+...-+.+ .+ -++|.++.-+.....+.+
T Consensus 205 ~Lg~~~EPyiv--------~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-----~llpsll~~l~~~kWrtK 271 (569)
T KOG1242|consen 205 NLGPPFEPYIV--------PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-----LLLPSLLGSLLEAKWRTK 271 (569)
T ss_pred hcCCCCCchHH--------hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-----HhhhhhHHHHHHHhhhhH
Confidence 11111111121 14444444445556788877777766555432221 11 156666666655577888
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 404 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 404 ~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
..++..++.++... | .|. ...-..++|.+.+.|.+..+++...+.+++..+....
T Consensus 272 ~aslellg~m~~~a------p----~qL-s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 272 MASLELLGAMADCA------P----KQL-SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred HHHHHHHHHHHHhc------h----HHH-HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 99999999887642 2 232 3345679999999999999999999988888776543
No 105
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.71 E-value=0.001 Score=72.95 Aligned_cols=268 Identities=18% Similarity=0.139 Sum_probs=165.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC---Ch
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG---KQ 158 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~---~~ 158 (518)
.-+-+.|+.++. .+.++.|+..|+. ++..-. ++..=..++|.++.++... ...++..|+..|+.+-.. -+
T Consensus 425 s~lts~IR~lk~--~~tK~~ALeLl~~-lS~~i~---de~~LDRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 425 SVLTSCIRALKT--IQTKLAALELLQE-LSTYID---DEVKLDRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred HHHHHHHHhhhc--chhHHHHHHHHHH-Hhhhcc---hHHHHhhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCC
Confidence 344555555553 5778999999888 454322 2233367999999999753 355667788888877632 11
Q ss_pred HHHHHhc-C-ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH---HHHHhc-------------------------
Q 010080 159 EETKALL-P-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR---NVLLSQ------------------------- 208 (518)
Q Consensus 159 ~~~~~v~-~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r---~~~~~~------------------------- 208 (518)
..-..++ + .+|.|-.++.++...-++-.-+.+|+.+|.---.+- ..+-..
T Consensus 498 ~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 498 PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 1111222 3 788888888764455566666666666654110000 011111
Q ss_pred CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080 209 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 288 (518)
Q Consensus 209 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 288 (518)
++=.....|+..+++-+++..+-.|.-||........ ..-+++.|..+|++.|..++....-.+..++-. .
T Consensus 578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks-----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~----V 648 (1431)
T KOG1240|consen 578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS-----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF----V 648 (1431)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc-----ccchHHHHHHHhcCccHHHHHHHHhhccceEEE----E
Confidence 1111222344444455666666666666643221111 123567788888888877777766666665531 1
Q ss_pred hHH-HhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHH
Q 010080 289 SLL-VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWV 367 (518)
Q Consensus 289 ~~~-~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~ 367 (518)
... ++.+++|.|..-| .+..+.|+..||.++.-++...--....++ .++.....+|-|++.-||..+|..
T Consensus 649 G~rs~seyllPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--------~i~~~v~PlL~hPN~WIR~~~~~i 719 (1431)
T KOG1240|consen 649 GWRSVSEYLLPLLQQGL-TDGEEAVIVSALGSLSILIKLGLLRKPAVK--------DILQDVLPLLCHPNLWIRRAVLGI 719 (1431)
T ss_pred eeeeHHHHHHHHHHHhc-cCcchhhHHHHHHHHHHHHHhcccchHHHH--------HHHHhhhhheeCchHHHHHHHHHH
Confidence 111 3556788888888 477788999999999999866544555555 377888889999999999999999
Q ss_pred HHHhccC
Q 010080 368 LSNIAAG 374 (518)
Q Consensus 368 Lsnl~~~ 374 (518)
|..++..
T Consensus 720 I~~~~~~ 726 (1431)
T KOG1240|consen 720 IAAIARQ 726 (1431)
T ss_pred HHHHHhh
Confidence 8877653
No 106
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.69 E-value=0.0009 Score=62.89 Aligned_cols=184 Identities=17% Similarity=0.147 Sum_probs=112.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCC-CCCcHHHHHH--cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CC
Q 010080 92 GKGAMQKRVNALRELRRLLSRF-EFPPIETALK--AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PA 167 (518)
Q Consensus 92 ~s~~~~~~~~a~~~lr~lls~~-~~~~~~~~i~--~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~ 167 (518)
.+.|=+.+.+|+..|+.++... .......+++ ..+++.++..+.+.. ..+...|+.++..++..-....+..+ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4678889999999999988766 1122223322 255566666665433 34557799999999865444444455 48
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC-CCchh
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD-PKPAT 246 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~-~~~~~ 246 (518)
+|.|+..+.+ ++.-+++.|..+|..++...+.... ++ ++.+...+.+.++.++..++-.+..+..... +....
T Consensus 96 l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~~-~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGD-SKKFIREAANNALDAIIESCSYSPK-IL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--H-HH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHHH-HH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 9999999988 6788999999999999985541111 11 4555666778889999888888888775432 11111
Q ss_pred h-HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 247 E-LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 247 ~-~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
. ......+++.+.+++.+.+++|+..+-.++..+..
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 10124688889999999999999887777766654
No 107
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.057 Score=51.62 Aligned_cols=351 Identities=15% Similarity=0.116 Sum_probs=208.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCc---HHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPP---IETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP 166 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~---~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~ 166 (518)
++..+|...+.-++..+-.++....... +..++..|++|.++.++...+ .++-..|...+..|+.. +....+++.
T Consensus 90 GLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialf-paaleaiFe 167 (524)
T KOG4413|consen 90 GLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALF-PAALEAIFE 167 (524)
T ss_pred cccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhc-HHHHHHhcc
Confidence 5567777888888888888777654333 345568999999999997554 44545577777777743 344555552
Q ss_pred --ChH--HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCC
Q 010080 167 --ALP--LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 167 --~v~--~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~ 241 (518)
... .+..+-.. -+.-++......+-.|..-+++....+-..|.+..|..-|+. .+.-+..++.-....|+....
T Consensus 168 SellDdlhlrnlaak-cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH 246 (524)
T KOG4413|consen 168 SELLDDLHLRNLAAK-CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH 246 (524)
T ss_pred cccCChHHHhHHHhh-hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence 222 22233233 344566667777778887789999999999999999988886 577777888888888886532
Q ss_pred CCchhhHHHhhchHHHHHHHhccC--ChhHHHHHHHHHHHhhcCCchhhhHHHhcCch-------HHHHHHHccCCCccc
Q 010080 242 PKPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSNVATSLLVKSGVL-------QLLVERLATSNSLQL 312 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~-------~~Lv~lL~~~~~~~v 312 (518)
.++++...|.+..+.+++.-. ||--...++-....+.. .+.+-.+.+...+ ....+.+ ..+++..
T Consensus 247 ---greflaQeglIdlicnIIsGadsdPfekfralmgfgkffg--keaimdvseeaicealiiaidgsfEmi-EmnDpda 320 (524)
T KOG4413|consen 247 ---GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG--KEAIMDVSEEAICEALIIAIDGSFEMI-EMNDPDA 320 (524)
T ss_pred ---hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc--chHHhhcCHHHHHHHHHHHHHhhHHhh-hcCCchH
Confidence 245666789999999999743 33222223333222221 1111111111222 2233333 3667888
Q ss_pred hhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC---CHHHHH---------
Q 010080 313 LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG---SVEHKQ--------- 380 (518)
Q Consensus 313 ~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~---~~~~~~--------- 380 (518)
+..|+-++|-+-+.. +..+.+...|. ..+=..+......+...-+..+..+|.||+.. .++++.
T Consensus 321 ieaAiDalGilGSnt-eGadlllkTgp---paaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlr 396 (524)
T KOG4413|consen 321 IEAAIDALGILGSNT-EGADLLLKTGP---PAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLR 396 (524)
T ss_pred HHHHHHHHHhccCCc-chhHHHhccCC---hHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHH
Confidence 888888888775443 34455555441 11222333333333445566778888888753 233321
Q ss_pred H-HHhC-------CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCH
Q 010080 381 L-IHSS-------EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADI 452 (518)
Q Consensus 381 ~-li~~-------~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~ 452 (518)
. +.++ .-+..+..+++.+.++++..|..++..++..+ -.+...+.+.|+| ++..+...
T Consensus 397 clifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqP----------Walkeifakeefi----eiVtDast 462 (524)
T KOG4413|consen 397 CLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQP----------WALKEIFAKEEFI----EIVTDAST 462 (524)
T ss_pred HHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCc----------HHHHHHhcCccce----eeecccch
Confidence 1 1111 22444566677788899999999999988753 1222233344544 44444555
Q ss_pred HHHHHHHHHHHHHHc
Q 010080 453 EAARLGLQFMELVLR 467 (518)
Q Consensus 453 ~~~~~~l~~l~~il~ 467 (518)
+.-+.+.++=++.++
T Consensus 463 EhaKaakdAkYeccK 477 (524)
T KOG4413|consen 463 EHAKAAKDAKYECCK 477 (524)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555443
No 108
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.65 E-value=0.0001 Score=48.49 Aligned_cols=39 Identities=36% Similarity=0.653 Sum_probs=36.0
Q ss_pred hhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080 200 EFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 238 (518)
Q Consensus 200 ~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 238 (518)
+.+..+.+.|++++|+.++.+++..+++.++|+|+||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 477889999999999999998899999999999999973
No 109
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.64 E-value=0.0035 Score=59.38 Aligned_cols=227 Identities=14% Similarity=0.085 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHHHhhhCCChhhHHHHHhcC-ChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHHH-hhchH
Q 010080 180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQG-ALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELIK-VDGLL 255 (518)
Q Consensus 180 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g-~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~i~-~~~~l 255 (518)
++-.+.-|+.|+.++.. .++.|+.....+ .-..++.++++. ...++-+...+++.|...+ .+.+.+. .-..+
T Consensus 162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~---~~aqdi~K~~dli 237 (432)
T COG5231 162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK---ECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH---HHHHHHHHHHHHH
Confidence 45578889999999998 568888776554 334566666653 5788999999999988653 2222221 12455
Q ss_pred HHHHHHhccC-ChhHHHHHHHHHHHhhc-CCchhhhHHHhcCchHHHHHHHcc--CCCccchhhhhhhhhhhhcCC----
Q 010080 256 DAILRHLKRA-DEELTTEVAWVVVYLSA-LSNVATSLLVKSGVLQLLVERLAT--SNSLQLLIPVLRSLGNLVAGD---- 327 (518)
Q Consensus 256 ~~L~~lL~~~-d~~v~~~a~~~L~~L~~-~~~~~~~~~~~~g~~~~Lv~lL~~--~~~~~v~~~al~~L~nl~~~~---- 327 (518)
.-+++++... .+.|..-+|..+.++++ .+...+..+.-.|-+.+.++.|.. ..+.+++...=++=..+....
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~ 317 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence 5566666543 45788889999999998 344555555545545555665542 223333322111111111000
Q ss_pred -----------------Cc---------ccceeeccCCCchhhhHHHHHHHhccChhh-hHHHHHHHHHHhccCCHHHHH
Q 010080 328 -----------------SS---------TISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAAWVLSNIAAGSVEHKQ 380 (518)
Q Consensus 328 -----------------~~---------~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~-i~~~a~~~Lsnl~~~~~~~~~ 380 (518)
+. ..+.++.. +-.++..|..++++..+. ...-||.-|..+....|+-+.
T Consensus 318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kd----ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~ 393 (432)
T COG5231 318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKD----NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA 393 (432)
T ss_pred HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhh----hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence 00 01111110 235677888889887765 556688888888888999988
Q ss_pred HHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 381 LIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 381 ~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
.+...|+=..+++++.++|++|+-||..|+--+.
T Consensus 394 vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 394 VLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 8889999999999999999999999999886653
No 110
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.61 E-value=0.011 Score=60.82 Aligned_cols=318 Identities=18% Similarity=0.199 Sum_probs=174.4
Q ss_pred HHHHHHHhcCCCCh--HHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH-
Q 010080 127 IPVLVQCLAFGSPD--EQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR- 202 (518)
Q Consensus 127 ip~Lv~~L~~~~~~--~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r- 202 (518)
+|.|+..|..+++. ......+.+|..+|.... ..+.++ ..+..+-....+..+.+....++.+|.++........
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 47788888754432 232348888999986543 223332 3444555555443456677777777777754332222
Q ss_pred ----HHHHhcCChhHHHhhhCC-----C--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--------
Q 010080 203 ----NVLLSQGALPPLARMMLP-----N--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-------- 263 (518)
Q Consensus 203 ----~~~~~~g~i~~L~~ll~~-----~--~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-------- 263 (518)
....+..++|.+..+... . +..+...+...+..+++.-++.. ....+..+..++.
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~------q~~~~~~~~~lf~~~~~~~~~ 153 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEK------QQEILDELYSLFLSPKSFSPF 153 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHccccccCCC
Confidence 223344477777776532 1 24566666666666665532211 1223333333332
Q ss_pred --c------CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC--CCccc--
Q 010080 264 --R------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG--DSSTI-- 331 (518)
Q Consensus 264 --~------~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~--~~~~~-- 331 (518)
. .......-...+++.+-... ... -...++..++.+..+..++..+..++++++-++-- +++..
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~--~~~--~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~ 229 (415)
T PF12460_consen 154 QPSSSTISEQQSRLVILFSAILCSLRKDV--SLP--DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDE 229 (415)
T ss_pred CccccccccccccHHHHHHHHHHcCCccc--Ccc--CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHH
Confidence 0 01112222222333222211 011 01124455555544444455555566655555422 11100
Q ss_pred -----------------------------ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHH----
Q 010080 332 -----------------------------SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH---- 378 (518)
Q Consensus 332 -----------------------------~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~---- 378 (518)
...+--|+......+..|+.++.+ +.+...|+..++-|....+..
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~ 307 (415)
T PF12460_consen 230 FLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKE 307 (415)
T ss_pred HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCcc
Confidence 001111222223456677777766 567788888888887763332
Q ss_pred ---------HHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhcc
Q 010080 379 ---------KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS 449 (518)
Q Consensus 379 ---------~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~ 449 (518)
.|.+... ++|.|++-.+..+...|.....||+++..+ .|.++ ....+ ..++|.|++-|..
T Consensus 308 ~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~------vP~~v--l~~~l--~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 308 NHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIKSNYLTALSHLLKN------VPKSV--LLPEL--PTLLPLLLQSLSL 376 (415)
T ss_pred ccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhHHHHHHHHHHHHhh------CCHHH--HHHHH--HHHHHHHHHHhCC
Confidence 3444443 789999998887777888899999999874 34222 11111 2479999999999
Q ss_pred CCHHHHHHHHHHHHHHHcc
Q 010080 450 ADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 450 ~d~~~~~~~l~~l~~il~~ 468 (518)
+|+++...+|+.|..++..
T Consensus 377 ~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 377 PDADVLLSSLETLKMILEE 395 (415)
T ss_pred CCHHHHHHHHHHHHHHHHc
Confidence 9999999999999999864
No 111
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.58 E-value=0.0025 Score=70.02 Aligned_cols=298 Identities=16% Similarity=0.094 Sum_probs=176.8
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhC---CChhh
Q 010080 126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAG---EGEEF 201 (518)
Q Consensus 126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~---d~~~~ 201 (518)
+++.+...++.-.......+|+..|..++.-..+ +..+ -.+|.++.++.. +..+||..|+.+|..+-. +-+..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMD-SEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4666666666433344567888888888843321 1223 379999999988 789999999998887753 22333
Q ss_pred HHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080 202 RNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL 280 (518)
Q Consensus 202 r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L 280 (518)
-..+...-++|-|-.++.+ ....++...+.+|..|+..- ..+. ..+.-.....+++..+.+.. -
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA-----~rFl-e~~q~~~~~g~~n~~nset~---------~ 564 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA-----YRFL-ELTQELRQAGMLNDPNSETA---------P 564 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH-----HHHH-HHHHHHHhcccccCcccccc---------c
Confidence 3344555567888888876 45566667777777777421 1111 11111111223343333300 0
Q ss_pred hcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC-cccceeeccCCCchhhhHHHHHHHhccChhh
Q 010080 281 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCLKSEHRV 359 (518)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~ 359 (518)
-...+...+.+. .++-+..+.+|. .+++-|+...+..|+-+|..-. .+.. .-+++.|+.+|+..++.
T Consensus 565 ~~~~~~~~~~L~-~~V~~~v~sLls-d~~~~Vkr~Lle~i~~LC~FFGk~ksN----------D~iLshLiTfLNDkDw~ 632 (1431)
T KOG1240|consen 565 EQNYNTELQALH-HTVEQMVSSLLS-DSPPIVKRALLESIIPLCVFFGKEKSN----------DVILSHLITFLNDKDWR 632 (1431)
T ss_pred ccccchHHHHHH-HHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHhhhcccc----------cchHHHHHHHhcCccHH
Confidence 001122233332 233344455553 4445566666666776663321 1111 23789999999999988
Q ss_pred hHHHHHHHHHHhcc--CCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 010080 360 LKKEAAWVLSNIAA--GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR 437 (518)
Q Consensus 360 i~~~a~~~Lsnl~~--~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~ 437 (518)
+|-.-.-.|.-++. |.. =++..++|.|.+-|.++++-|...|+.+|.-++.. ..+++..-.
T Consensus 633 LR~aFfdsI~gvsi~VG~r-----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~------------~ll~K~~v~ 695 (1431)
T KOG1240|consen 633 LRGAFFDSIVGVSIFVGWR-----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL------------GLLRKPAVK 695 (1431)
T ss_pred HHHHHHhhccceEEEEeee-----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh------------cccchHHHH
Confidence 87654444443332 221 12445899999999999999999999999999863 123333333
Q ss_pred CchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080 438 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 470 (518)
Q Consensus 438 g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~ 470 (518)
..++-..-+|..++.=+...++..|..+.+...
T Consensus 696 ~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 696 DILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 344455556667887788888888887776543
No 112
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.57 E-value=0.00043 Score=65.10 Aligned_cols=183 Identities=16% Similarity=0.203 Sum_probs=112.2
Q ss_pred cCCCccchhhhhhhhhhhhcCC--CcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHH
Q 010080 306 TSNSLQLLIPVLRSLGNLVAGD--SSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIH 383 (518)
Q Consensus 306 ~~~~~~v~~~al~~L~nl~~~~--~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li 383 (518)
.+.+.+.+..++..|..++.++ ......+++. -..++..+...+.+....+.+.||.+++.++..........+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~----l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~ 92 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVEC----LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA 92 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHH----HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHH----HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 4567777888888888888776 2222222210 012334566666667778999999999999875444455554
Q ss_pred hCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHH
Q 010080 384 SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME 463 (518)
Q Consensus 384 ~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~ 463 (518)
+ .++|.|+..+.++...++..|..+|..++.... ..+ .+ .++.+...+.++++.+...++..+.
T Consensus 93 ~-~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~--------~~----~~~~l~~~~~~Kn~~vR~~~~~~l~ 156 (228)
T PF12348_consen 93 D-ILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSP--------KI----LLEILSQGLKSKNPQVREECAEWLA 156 (228)
T ss_dssp H-HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H----------HH----HHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHH--------HH----HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4 388999999999988899999999999987531 011 11 1556667788899999999999999
Q ss_pred HHHccCCCCcchhHHHhhc----hHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080 464 LVLRGMPNHEGTKLVERED----GIDAMERFQFHENEDLRNMANGLVDKYF 510 (518)
Q Consensus 464 ~il~~~~~~~~~~~ie~~g----gl~~l~~L~~~~~~~i~~~a~~il~~~f 510 (518)
.++...+.. ...+...+ ..+.|..+..++++++++.|...+..|+
T Consensus 157 ~~l~~~~~~--~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 157 IILEKWGSD--SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHTT-------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHccch--HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 999876511 11122222 3446777889999999999988877765
No 113
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0034 Score=64.91 Aligned_cols=190 Identities=15% Similarity=0.169 Sum_probs=123.8
Q ss_pred hHHHhhhCCCChhHHHHH---HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080 212 PPLARMMLPNKGSTVRTA---AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 288 (518)
Q Consensus 212 ~~L~~ll~~~~~~~~~~a---~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 288 (518)
...+.++..++..++..| +|..+|.+-.+.+....+.-....++..+.+.+.+-.-.|+..|+.+|+.+..-+.+.+
T Consensus 237 ~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i 316 (823)
T KOG2259|consen 237 SRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEII 316 (823)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHH
Confidence 345566667777777666 67777887332222211111234677778888888888899999999998887666666
Q ss_pred hHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC-----------CCcccceeeccCCCchhhhHHHHHHHhccCh
Q 010080 289 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG-----------DSSTISDVLVPGHGITDQVIAVLVKCLKSEH 357 (518)
Q Consensus 289 ~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~-----------~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~ 357 (518)
+..++..+...+-..=..+.-+ ..+..=|..+.| .+.+...+|.+ |+-..++.-|..+-
T Consensus 317 ~QTLdKKlms~lRRkr~ahkrp----k~l~s~GewSsGk~~~advpsee~d~~~~siI~s------GACGA~VhGlEDEf 386 (823)
T KOG2259|consen 317 QQTLDKKLMSRLRRKRTAHKRP----KALYSSGEWSSGKEWNADVPSEEDDEEEESIIPS------GACGALVHGLEDEF 386 (823)
T ss_pred HHHHHHHHhhhhhhhhhcccch----HHHHhcCCcccCccccccCchhhccccccccccc------cccceeeeechHHH
Confidence 6666654444322211111111 112112211211 33445556654 47777777777777
Q ss_pred hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 358 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 358 ~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
..||+.|...++-|+..+|..... .+..|++++.+...+||..|..+|..++.+
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999877665433 466899999999999999999999999875
No 114
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.097 Score=55.68 Aligned_cols=287 Identities=14% Similarity=0.127 Sum_probs=172.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~ 161 (518)
.+|+++|. |+....+++|+..+-.++.++.+- +...|..|.-..+.+ .++..-.--.|...|..+++..
T Consensus 38 ~dL~~lLd---Snkd~~KleAmKRIia~iA~G~dv-------S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA 106 (968)
T KOG1060|consen 38 DDLKQLLD---SNKDSLKLEAMKRIIALIAKGKDV-------SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA 106 (968)
T ss_pred HHHHHHHh---ccccHHHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce
Confidence 46666664 888889999999999988888762 446777777776655 3444444445555565443211
Q ss_pred HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080 162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 241 (518)
+-.|..|-+-|.. +|+.+|..|+++|..|=. -++..=++-.+-.......+-+++.|+.++-.|.+-.
T Consensus 107 ---LLSIntfQk~L~D-pN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd- 174 (968)
T KOG1060|consen 107 ---LLSINTFQKALKD-PNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD- 174 (968)
T ss_pred ---eeeHHHHHhhhcC-CcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-
Confidence 1246677777877 899999988888876532 1111111112223334567899999999999998653
Q ss_pred CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 321 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~ 321 (518)
+.. ....+..+-.||.+.++-|...|..++-.+|- ++.+.+ ++-..++..+|.+-.+. -+.-.+..|-
T Consensus 175 ~e~------k~qL~e~I~~LLaD~splVvgsAv~AF~evCP---erldLI--HknyrklC~ll~dvdeW-gQvvlI~mL~ 242 (968)
T KOG1060|consen 175 PEQ------KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLI--HKNYRKLCRLLPDVDEW-GQVVLINMLT 242 (968)
T ss_pred hhh------HHHHHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHh--hHHHHHHHhhccchhhh-hHHHHHHHHH
Confidence 221 23566777788889999999999999988874 344444 33455555555321111 1111122222
Q ss_pred hhhcC---CC----------------------cccceeeccCCCchh-hhHHHHHHHhccChhhhHHHHHHHHHHhccCC
Q 010080 322 NLVAG---DS----------------------STISDVLVPGHGITD-QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS 375 (518)
Q Consensus 322 nl~~~---~~----------------------~~~~~~i~~G~~~~~-~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~ 375 (518)
..+.. ++ .++-.+.+. +. -++.....+|.+.++.+...+|.+...++-.+
T Consensus 243 RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~----D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~ 318 (968)
T KOG1060|consen 243 RYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDP----DLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN 318 (968)
T ss_pred HHHHhcCCCccccccccccCcccccccccccccCCCcccCc----cHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence 11110 00 001111111 11 24556667888889999998888888886433
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 376 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 376 ~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
+.. .++.+|+++|.+.. .+|.-.+..|..++.
T Consensus 319 --~~~-----~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~ 350 (968)
T KOG1060|consen 319 --QVT-----KIAKALVRLLRSNR-EVQYVVLQNIATISI 350 (968)
T ss_pred --HHH-----HHHHHHHHHHhcCC-cchhhhHHHHHHHHh
Confidence 222 35678899886654 466666666665554
No 115
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.51 E-value=0.015 Score=55.25 Aligned_cols=219 Identities=16% Similarity=0.161 Sum_probs=140.4
Q ss_pred HHHHHHHHHhcCChHHHHHhc--C-ChHHHHHhhcCC-CCHHHHHHHHHHHHhhhCCChhhHHHHHh-cCChhHHHhhhC
Q 010080 145 EAAWCLTNIAAGKQEETKALL--P-ALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLS-QGALPPLARMML 219 (518)
Q Consensus 145 eA~~~L~nia~~~~~~~~~v~--~-~v~~Lv~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~-~g~i~~L~~ll~ 219 (518)
-|..|+.+++.. ++.+..+- . .-..++.+++++ ...++|...+.++.-+.. ++.+.+.+-. ...+.-|+++++
T Consensus 168 fav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli~dli~iVk 245 (432)
T COG5231 168 FAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLINDLIAIVK 245 (432)
T ss_pred HHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888754 34555443 2 445566777653 347899999888888887 5566533322 234666777777
Q ss_pred CC-ChhHHHHHHHHHHHhhcCCCCCc-hhhHHHhhchHHHHHHHhc--cCChhHHHHHHHHHHHhhcC------------
Q 010080 220 PN-KGSTVRTAAWALSNLIKGPDPKP-ATELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSAL------------ 283 (518)
Q Consensus 220 ~~-~~~~~~~a~~~L~nL~~~~~~~~-~~~~i~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~------------ 283 (518)
.. ...+.|-++..+.|+|. +.|+. .+......++.|..-.++. ..|+++..+.-..=+.|...
T Consensus 246 ~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ 324 (432)
T COG5231 246 ERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLN 324 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 54 78899999999999996 33332 2223332334444333333 45666665543332222211
Q ss_pred ---------C---------chhhhHHHhc--CchHHHHHHHccCCCcc-chhhhhhhhhhhhcCCCcccceeeccCCCch
Q 010080 284 ---------S---------NVATSLLVKS--GVLQLLVERLATSNSLQ-LLIPVLRSLGNLVAGDSSTISDVLVPGHGIT 342 (518)
Q Consensus 284 ---------~---------~~~~~~~~~~--g~~~~Lv~lL~~~~~~~-v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~ 342 (518)
+ ..+.+.+.+. .++..|.++|. ++.+. ...-||.-|+.++...++....+..
T Consensus 325 ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq-~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K------ 397 (432)
T COG5231 325 ELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ-SNNPNTWICVACSDIFQLVRASPEINAVLSK------ 397 (432)
T ss_pred HHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh-cCCCCceEeeeHhhHHHHHHhCchHHHHHHH------
Confidence 1 1223334332 46788888885 55555 5667899999999888777665554
Q ss_pred hhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080 343 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 373 (518)
Q Consensus 343 ~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~ 373 (518)
.|+-..++.+++|+++.|+.+|..++.-+..
T Consensus 398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 398 YGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 4688999999999999999999999876653
No 116
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.018 Score=53.49 Aligned_cols=256 Identities=18% Similarity=0.235 Sum_probs=152.1
Q ss_pred HHHHHHHhcCCCCh-HHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHH
Q 010080 127 IPVLVQCLAFGSPD-EQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL 205 (518)
Q Consensus 127 ip~Lv~~L~~~~~~-~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~ 205 (518)
+..+.+.|...+.+ .-.+.|...|.|+.+... +..+.+.... ++..++...+++||.....
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~---------i~~i~ka~~d-~s~llkhe~ay~LgQ~~~~-------- 66 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGPAA---------IKAITKAFID-DSALLKHELAYVLGQMQDE-------- 66 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCChHH---------HHHHHHhccc-chhhhccchhhhhhhhccc--------
Confidence 33444555443222 122557777777775332 3344444444 3456677788888876652
Q ss_pred HhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC
Q 010080 206 LSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL 283 (518)
Q Consensus 206 ~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 283 (518)
.++|.|+..+... .+-++-.|..+|.++. . ...++.+-+..+++-.+|...+..++.++-+.
T Consensus 67 ---~Av~~l~~vl~desq~pmvRhEAaealga~~-~------------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~ 130 (289)
T KOG0567|consen 67 ---DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D------------PESLEILTKYIKDPCKEVRETCELAIKRLEWK 130 (289)
T ss_pred ---hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c------------hhhHHHHHHHhcCCccccchHHHHHHHHHHHh
Confidence 4689999888744 5666778999998885 2 14456666777555567788788888887753
Q ss_pred Cchhh----hHH--H------hcCchHHHHHHHccCCCccc-hhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHH
Q 010080 284 SNVAT----SLL--V------KSGVLQLLVERLATSNSLQL-LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLV 350 (518)
Q Consensus 284 ~~~~~----~~~--~------~~g~~~~Lv~lL~~~~~~~v-~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~ 350 (518)
+.-.. ... . ..+-+..+-..|.+.+.+.. +-.|+..|.|+- ....+..|.
T Consensus 131 ~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g-----------------~EeaI~al~ 193 (289)
T KOG0567|consen 131 DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG-----------------TEEAINALI 193 (289)
T ss_pred hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC-----------------cHHHHHHHH
Confidence 21110 000 0 01112233222222221111 224455555542 123566777
Q ss_pred HHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc--CCChhHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 010080 351 KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS--TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQ 428 (518)
Q Consensus 351 ~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~--~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~ 428 (518)
.-+..++.-.|.+++++++.+-+.. .+|.|...|. ...+-||.+|+.||+.++..
T Consensus 194 ~~l~~~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------ 250 (289)
T KOG0567|consen 194 DGLADDSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------ 250 (289)
T ss_pred HhcccchHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------------
Confidence 7777778889999999999885433 6788888884 45678999999999998641
Q ss_pred HHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHH
Q 010080 429 EHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELV 465 (518)
Q Consensus 429 ~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~i 465 (518)
. +++.|...+.+.++-+...|--+|..+
T Consensus 251 -~--------~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 251 -D--------CVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred -H--------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1 456677777666655554444444433
No 117
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.46 E-value=0.018 Score=59.69 Aligned_cols=265 Identities=16% Similarity=0.096 Sum_probs=163.5
Q ss_pred HHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHh---------cCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHH
Q 010080 103 LRELRRLLSRFEFPPIETALKAGAIPVLVQCL---------AFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLL 171 (518)
Q Consensus 103 ~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L---------~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~L 171 (518)
+..||- +++++. ..+.++....+..|..+= ..........||+.||.|+...++..++..+ +..+.+
T Consensus 2 L~~LRi-LsRd~~-~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRI-LSRDPT-GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHH-HccCcc-cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 344444 666653 234455555666666665 2233455668999999999999888887777 788999
Q ss_pred HHhhcCC----CCHHHHHHHHHHHHhhhCCChhhHHHHHhc-CChhHHHhhhCC-----------------CChhHHHHH
Q 010080 172 IAHLGEK----SSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-GALPPLARMMLP-----------------NKGSTVRTA 229 (518)
Q Consensus 172 v~lL~~~----~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g~i~~L~~ll~~-----------------~~~~~~~~a 229 (518)
+..|... .+.++.--..+.|-=++...+..+..+++. +++..|...|.. .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999874 267788888888877777777778776655 677777765531 123456777
Q ss_pred HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc---------CChhHHHHHHHHHHHhhcCCchh-------h----h
Q 010080 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR---------ADEELTTEVAWVVVYLSALSNVA-------T----S 289 (518)
Q Consensus 230 ~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~---------~d~~v~~~a~~~L~~L~~~~~~~-------~----~ 289 (518)
+..+.|+..........+ ..+.++.|+.++.+ +.......+..+|.++--..... . .
T Consensus 160 LKllFNit~~~~~~~~~~---~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~ 236 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEE---FSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP 236 (446)
T ss_pred HHHHHHhhhccCcccchh---hhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC
Confidence 888889875532211101 23444444444331 11356777777777763211111 0 0
Q ss_pred HHHhcCchHHHHHHHcc----CC---CccchhhhhhhhhhhhcCCCccc--------------ceeeccCCCchhhhHHH
Q 010080 290 LLVKSGVLQLLVERLAT----SN---SLQLLIPVLRSLGNLVAGDSSTI--------------SDVLVPGHGITDQVIAV 348 (518)
Q Consensus 290 ~~~~~g~~~~Lv~lL~~----~~---~~~v~~~al~~L~nl~~~~~~~~--------------~~~i~~G~~~~~~~l~~ 348 (518)
......++..|+.+|.. .. -.+...|.+.+|.+++..+.... ....+.| ..+-..
T Consensus 237 ~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~----~tL~~r 312 (446)
T PF10165_consen 237 EGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKG----DTLRSR 312 (446)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCC----cchHHH
Confidence 01122345666666541 11 23577899999999987753221 1222222 357778
Q ss_pred HHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080 349 LVKCLKSEHRVLKKEAAWVLSNIAAGSV 376 (518)
Q Consensus 349 L~~lL~~~~~~i~~~a~~~Lsnl~~~~~ 376 (518)
|++++.+..+.++..+.-.+-.|+..+.
T Consensus 313 LlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 313 LLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 9999999888889888888888875543
No 118
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.44 E-value=0.035 Score=57.52 Aligned_cols=234 Identities=18% Similarity=0.131 Sum_probs=147.3
Q ss_pred CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhh
Q 010080 178 KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-----KGSTVRTAAWALSNLIKGPDPKPATELIKVD 252 (518)
Q Consensus 178 ~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~ 252 (518)
.++..+...|+.||+|+...++..|..+.+.|..+.++..++.. +.++.--....|.-++... +....+++...
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~-~~~~~~L~~e~ 121 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALR-PDDRKKLIEEH 121 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-hhHHHHHHHHh
Confidence 36789999999999999999999999999999999999999854 5666666777666666432 33444555555
Q ss_pred chHHHHHHHhc----------c-------CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccC--------
Q 010080 253 GLLDAILRHLK----------R-------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-------- 307 (518)
Q Consensus 253 ~~l~~L~~lL~----------~-------~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~-------- 307 (518)
+++..+...|. . .+.+...+++..+.|++...+.... -...+.++.++..|...
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~ 200 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSP 200 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCC
Confidence 77777766553 1 1446788999999999875443322 11234455555544321
Q ss_pred CCccchhhhhhhhhhhhcCCCcc-------cceeeccCCCchhhhHHHHHHHhccC-----h---hhhHHHHHHHHHHhc
Q 010080 308 NSLQLLIPVLRSLGNLVAGDSST-------ISDVLVPGHGITDQVIAVLVKCLKSE-----H---RVLKKEAAWVLSNIA 372 (518)
Q Consensus 308 ~~~~v~~~al~~L~nl~~~~~~~-------~~~~i~~G~~~~~~~l~~L~~lL~~~-----~---~~i~~~a~~~Lsnl~ 372 (518)
+.......++.+|.|+--..... ...+.-.| .+...+..|+.+|... . ...-.-..-+|.+++
T Consensus 201 ~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~--~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 201 PLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG--DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred cchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC--CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 11223455666666663111111 00011001 1234666677766432 1 123444566777777
Q ss_pred cCCHHHHHHHHh----------------CCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 373 AGSVEHKQLIHS----------------SEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 373 ~~~~~~~~~li~----------------~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
......++.+.. ..+-..|++++.+..+.++.-++..+..+|.
T Consensus 279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 665444444432 2345679999999889999999999988885
No 119
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.44 E-value=0.00095 Score=53.14 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc
Q 010080 360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 439 (518)
Q Consensus 360 i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~ 439 (518)
.|+.++++|+.++.+-+..+...++. ++|+++..+.+++.+||..|+.+|.|++.... .+.+.++ ..+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---------~~~l~~f--~~I 69 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVAR---------GEILPYF--NEI 69 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---------HHHHHHH--HHH
Confidence 47788999999987766666666554 89999999999999999999999999986421 1112221 347
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHc
Q 010080 440 LSGFIDLVRSADIEAARLGLQFMELVLR 467 (518)
Q Consensus 440 i~~L~~lL~~~d~~~~~~~l~~l~~il~ 467 (518)
+..|+.++.++|+.++..+ +.|.++++
T Consensus 70 F~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 70 FDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 8889999999998866555 77887764
No 120
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.41 E-value=0.016 Score=57.14 Aligned_cols=209 Identities=16% Similarity=0.204 Sum_probs=145.6
Q ss_pred HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCC---chhhHHH-h-hchHHHHHHHhccCChhHHHHHHHH
Q 010080 202 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPK---PATELIK-V-DGLLDAILRHLKRADEELTTEVAWV 276 (518)
Q Consensus 202 r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~i~-~-~~~l~~L~~lL~~~d~~v~~~a~~~ 276 (518)
...+...+.+..|+..|..-+-+.++.++-.++++.+..... |..+.+. . ..++..|+.. .+++++...+--.
T Consensus 69 a~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~g--y~~~dial~~g~m 146 (335)
T PF08569_consen 69 AQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRG--YENPDIALNCGDM 146 (335)
T ss_dssp HHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHG--GGSTTTHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHH--hcCccccchHHHH
Confidence 345566788889999888878889999999999998864322 2333332 1 1233333322 4466777777777
Q ss_pred HHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC
Q 010080 277 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE 356 (518)
Q Consensus 277 L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~ 356 (518)
|..++. .+...+.++....+..+.++. ..++-++...|..++.-+.+.+...+...+... -..++..+..+|.++
T Consensus 147 lRec~k-~e~l~~~iL~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n---~d~ff~~~~~Ll~s~ 221 (335)
T PF08569_consen 147 LRECIK-HESLAKIILYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN---YDRFFQKYNKLLESS 221 (335)
T ss_dssp HHHHTT-SHHHHHHHHTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---HHHHHHHHHHHCT-S
T ss_pred HHHHHh-hHHHHHHHhCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH---HHHHHHHHHHHccCC
Confidence 777775 455677888888999999987 588889999999999998877665444444321 135677888999999
Q ss_pred hhhhHHHHHHHHHHhccCC--HHHHHH-HHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080 357 HRVLKKEAAWVLSNIAAGS--VEHKQL-IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 417 (518)
Q Consensus 357 ~~~i~~~a~~~Lsnl~~~~--~~~~~~-li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 417 (518)
+.-+|+.+...|+.|.-.. -..... +-+..-+..++.+|++.+..+|-||.-+.--.+.+|
T Consensus 222 NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 222 NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999999999998643 222223 334456889999999999999999999998888765
No 121
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0093 Score=63.11 Aligned_cols=299 Identities=18% Similarity=0.157 Sum_probs=191.2
Q ss_pred cCCHHHHHHHhcCCCChHHHHHH-HHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080 124 AGAIPVLVQCLAFGSPDEQLLEA-AWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 202 (518)
Q Consensus 124 ~g~ip~Lv~~L~~~~~~~~~~eA-~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 202 (518)
.|.++.+-.-|.+.. +..+.+| -.++..+..|.+ +....|-+++.... .+.+++.-+--=+.|.+...|..
T Consensus 12 k~ei~elks~l~s~~-~~kr~~a~kkvIa~Mt~G~D-----vSslF~dvvk~~~T-~dlelKKlvyLYl~nYa~~~P~~- 83 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQS-KEKRKDAVKKVIAYMTVGKD-----VSSLFPDVVKCMQT-RDLELKKLVYLYLMNYAKGKPDL- 83 (734)
T ss_pred hhhchHHHHHhhhhh-hhhHHHHHHHHHhcCccCcc-----hHhhhHHHHhhccc-CCchHHHHHHHHHHHhhccCchH-
Confidence 344555555553322 2333443 345555555521 22356777777776 67888888888888888754432
Q ss_pred HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
..++++.++.=..++++.++.-|..++..+--. + + ..-+...|.+.++++++.++..+.-+...+-.
T Consensus 84 ----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~---~----i--~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~ 150 (734)
T KOG1061|consen 84 ----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVD---K----I--TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD 150 (734)
T ss_pred ----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh---H----H--HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc
Confidence 234566666666677787777777666554321 1 2 23567788899999999999999988888776
Q ss_pred CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080 283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 362 (518)
Q Consensus 283 ~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~ 362 (518)
.+ .+...+.|.+..|..++. +.++.|...|+.++..|...+.......+ ....+..++..+......-+.
T Consensus 151 ~~---~~~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~~~~~~~l------~~~~~~~lL~al~ec~EW~qi 220 (734)
T KOG1061|consen 151 ID---PDLVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHPSVNLLEL------NPQLINKLLEALNECTEWGQI 220 (734)
T ss_pred CC---hhhccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCCCCCcccc------cHHHHHHHHHHHHHhhhhhHH
Confidence 43 456678899999999995 78889999999999999977654222222 133445555555443333333
Q ss_pred HHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHH
Q 010080 363 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG 442 (518)
Q Consensus 363 ~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~ 442 (518)
...-++.+-....+...+. ++..+...|++.+..+.-.+..++.+.... ..++....-..+-++
T Consensus 221 ~IL~~l~~y~p~d~~ea~~-----i~~r~~p~Lqh~n~avvlsavKv~l~~~~~-----------~~~~~~~~~~K~~~p 284 (734)
T KOG1061|consen 221 FILDCLAEYVPKDSREAED-----ICERLTPRLQHANSAVVLSAVKVILQLVKY-----------LKQVNELLFKKVAPP 284 (734)
T ss_pred HHHHHHHhcCCCCchhHHH-----HHHHhhhhhccCCcceEeehHHHHHHHHHH-----------HHHHHHHHHHHhccc
Confidence 3333333333222222222 455677778888888888888888777643 233445555677888
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080 443 FIDLVRSADIEAARLGLQFMELVLRGMP 470 (518)
Q Consensus 443 L~~lL~~~d~~~~~~~l~~l~~il~~~~ 470 (518)
|+.++.... ++..++|+=+..|+...+
T Consensus 285 l~tlls~~~-e~qyvaLrNi~lil~~~p 311 (734)
T KOG1061|consen 285 LVTLLSSES-EIQYVALRNINLILQKRP 311 (734)
T ss_pred ceeeecccc-hhhHHHHhhHHHHHHhCh
Confidence 888887766 888888887777776554
No 122
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.35 E-value=0.00067 Score=54.05 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC--CCChhHHHHHHHHHHHhhcCC
Q 010080 183 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--PNKGSTVRTAAWALSNLIKGP 240 (518)
Q Consensus 183 v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~ 240 (518)
++..++..|+|++..++..++.+.+.|+||.+++... ..++-+++.|.|++.|||.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 3567889999999999999999999999999998765 447999999999999999874
No 123
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.19 E-value=0.006 Score=62.62 Aligned_cols=221 Identities=15% Similarity=0.159 Sum_probs=126.3
Q ss_pred hhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch--hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc-hh
Q 010080 211 LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA--TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN-VA 287 (518)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~--~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~ 287 (518)
+..++.+|.+..+.++..++-+.+.|+.- -+.| .+.+. .+=-.|..-|...+++++-..+.|+..+..... ..
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~v--lk~c~e~~~l~--klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKV--LKACGETKELA--KLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHH--HHhcchHHHHH--HHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 33444555666666666666666655421 0011 11111 111224445556788999888888887775221 11
Q ss_pred hhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHH
Q 010080 288 TSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWV 367 (518)
Q Consensus 288 ~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~ 367 (518)
.|- --.|++|.|..+| .+...++....+..+|.|+...++.+. +-+ +..+---|+.+|.+.+..+|+.|.-+
T Consensus 682 mqp-Pi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~-~rE-----WMRIcfeLvd~Lks~nKeiRR~A~~t 753 (975)
T COG5181 682 MQP-PISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIG-VRE-----WMRICFELVDSLKSWNKEIRRNATET 753 (975)
T ss_pred cCC-chhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCC-HHH-----HHHHHHHHHHHHHHhhHHHHHhhhhh
Confidence 111 1258899999999 477788888999999999977765321 111 12233456777788888999999999
Q ss_pred HHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHh
Q 010080 368 LSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDL 446 (518)
Q Consensus 368 Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~l 446 (518)
++.|+.- .|. +++..|++-|+.++-..|.-..-+|+-.+..+ | | -.++|.|.+=
T Consensus 754 fG~Is~aiGPq--------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~c----g-p------------fsVlP~lm~d 808 (975)
T COG5181 754 FGCISRAIGPQ--------DVLDILLNNLKVQERQQRVCTSVAISIVAEYC----G-P------------FSVLPTLMSD 808 (975)
T ss_pred hhhHHhhcCHH--------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc----C-c------------hhhHHHHHhc
Confidence 9988642 222 24556666676666544443333443332210 1 1 1245555554
Q ss_pred hccCCHHHHHHHHHHHHHHHcc
Q 010080 447 VRSADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 447 L~~~d~~~~~~~l~~l~~il~~ 468 (518)
...++..++.-+|+++..+++.
T Consensus 809 Y~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 809 YETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred ccCchhHHHHhHHHHHHHHHHH
Confidence 4445555555566666655543
No 124
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.081 Score=58.18 Aligned_cols=326 Identities=14% Similarity=0.101 Sum_probs=174.7
Q ss_pred hHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q 010080 77 TSSAVEELKS-AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAA 155 (518)
Q Consensus 77 ~~~~~~~l~~-~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~ 155 (518)
++..+|.+.. ++++++..|...+-.|.+.+-++.++-+-.-. ..+|...+.++..-+++..-..|+.+|..+|.
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La-----d~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA-----DQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH-----HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 4455555544 55688899999999999999998777542222 33455555665543333333568889999985
Q ss_pred CChHHHHHhcCChHHHHHhhcC-------CCCHHHHHHHHHHHHhhhCCChhh-HHHHHhcCChhH-HHhhhCCCChhHH
Q 010080 156 GKQEETKALLPALPLLIAHLGE-------KSSSPVAEQCAWALGNVAGEGEEF-RNVLLSQGALPP-LARMMLPNKGSTV 226 (518)
Q Consensus 156 ~~~~~~~~v~~~v~~Lv~lL~~-------~~~~~v~~~a~~~L~nla~d~~~~-r~~~~~~g~i~~-L~~ll~~~~~~~~ 226 (518)
..----..+...+|.+++-|.. +....||+.|++.++.++.-.... -+-++. ...+. |+..+-.+....+
T Consensus 410 rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 410 RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCR 488 (1133)
T ss_pred cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHh
Confidence 3322222223467777766642 124578999887777776532211 011111 11111 1222335678889
Q ss_pred HHHHHHHHHhh-cCCCCCchhhHH----------------------H-hhchHHH-HHHH----hccCChhHHHHHHHHH
Q 010080 227 RTAAWALSNLI-KGPDPKPATELI----------------------K-VDGLLDA-ILRH----LKRADEELTTEVAWVV 277 (518)
Q Consensus 227 ~~a~~~L~nL~-~~~~~~~~~~~i----------------------~-~~~~l~~-L~~l----L~~~d~~v~~~a~~~L 277 (518)
|.|.-+|-... |..+-+--.+++ . -.+.... +-++ +.+-|..++..++|+|
T Consensus 489 RAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL 568 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL 568 (1133)
T ss_pred HHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 99998887554 322210000111 0 0111122 2222 2356889999999999
Q ss_pred HHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCC-Cchhh---hHHHHHHHh
Q 010080 278 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH-GITDQ---VIAVLVKCL 353 (518)
Q Consensus 278 ~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~-~~~~~---~l~~L~~lL 353 (518)
..|+...+++ ...+++++++... .+.+...+.-+.-+.|.++.+.- ....++..-. ..-++ .++.+..--
T Consensus 569 ~~Ls~~~pk~----~a~~~L~~lld~~-ls~~~~~r~g~~la~~ev~~~~~-~l~~~~~~l~e~~i~~l~~ii~~~~~~~ 642 (1133)
T KOG1943|consen 569 HKLSLTEPKY----LADYVLPPLLDST-LSKDASMRHGVFLAAGEVIGALR-KLEPVIKGLDENRIAGLLSIIPPICDRY 642 (1133)
T ss_pred HHHHHhhHHh----hcccchhhhhhhh-cCCChHHhhhhHHHHHHHHHHhh-hhhhhhhhhHHHHhhhhhhhccHHHHHH
Confidence 9999754433 2356777777766 35565555544444444432210 0000000000 00001 122222211
Q ss_pred ccCh--hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 354 KSEH--RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 354 ~~~~--~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
.... .-++...+..+-++........+..+-.+.-..+.+.+++++ .+|..|.|+++.+++
T Consensus 643 ~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 643 FYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 1111 345666777888887766554444444445555556665555 788999999998876
No 125
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.015 Score=60.43 Aligned_cols=220 Identities=16% Similarity=0.146 Sum_probs=136.8
Q ss_pred HHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHH---HHHHHHhhcCCc--hhh
Q 010080 214 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEV---AWVVVYLSALSN--VAT 288 (518)
Q Consensus 214 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a---~~~L~~L~~~~~--~~~ 288 (518)
|..+....+..++.+|+-+|..|..+. +. ...+....++++.+++++|+..| .|..++..-.+. +.-
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KL------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc--cc------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 555556667777777777777776542 11 12345667888888888888777 555666652221 111
Q ss_pred hHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHH
Q 010080 289 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL 368 (518)
Q Consensus 289 ~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~L 368 (518)
+.-....++..+...+ ...+..++..|..+||-+-.-+++.++..++ ..++..+... ..-.+......
T Consensus 275 e~kl~D~aF~~vC~~v-~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd------KKlms~lRRk-----r~ahkrpk~l~ 342 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAV-RDRSLSVRVEAAKALGEFEQVSEEIIQQTLD------KKLMSRLRRK-----RTAHKRPKALY 342 (823)
T ss_pred hhhhHHHHHHHHHHHH-hcCceeeeehHHHHhchHHHhHHHHHHHHHH------HHHhhhhhhh-----hhcccchHHHH
Confidence 1112234567777777 4778889999999999886555444333332 1122211111 01111111222
Q ss_pred HHh--ccC-----------CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 010080 369 SNI--AAG-----------SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV 435 (518)
Q Consensus 369 snl--~~~-----------~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~ 435 (518)
++- ..| ..++-..+|.+|.-..+++-|.+.=.+||+.|+..++.++.... +.+
T Consensus 343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP---~FA----------- 408 (823)
T KOG2259|consen 343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP---GFA----------- 408 (823)
T ss_pred hcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC---CcH-----------
Confidence 222 111 11233457888988999999999889999999999999987421 221
Q ss_pred hcCchHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080 436 GRGCLSGFIDLVRSADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 436 ~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~ 468 (518)
..++..|++++++....+...++.+|..|...
T Consensus 409 -~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 409 -VRALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred -HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 12577789999988888888898888888754
No 126
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.053 Score=56.88 Aligned_cols=276 Identities=13% Similarity=0.137 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCC-CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh
Q 010080 140 DEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEK-SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM 218 (518)
Q Consensus 140 ~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~-~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll 218 (518)
+..+.-|+.++.|+.+. +...++..-||. +|-++ ...-|+..|+-||-.+-..+|+ .+-..+....++++|
T Consensus 125 ~~fv~LAL~~I~niG~r--e~~ea~~~DI~K---lLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL 196 (938)
T KOG1077|consen 125 PTFVCLALHCIANIGSR--EMAEAFADDIPK---LLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL 196 (938)
T ss_pred cHHHHHHHHHHHhhccH--hHHHHhhhhhHH---HHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh
Confidence 33446688999998753 455565566664 44443 3456888899999988875543 344556788999999
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-------------cCChhHHHHHHHHHHHhhcCCc
Q 010080 219 LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-------------RADEELTTEVAWVVVYLSALSN 285 (518)
Q Consensus 219 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-------------~~d~~v~~~a~~~L~~L~~~~~ 285 (518)
...+..+...++..+--|+... |+..... ...++..|.++.. -+.|.+...++..|.+.-.-.+
T Consensus 197 ~D~~~gv~ta~~sLi~~lvk~~-p~~yk~~--~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D 273 (938)
T KOG1077|consen 197 DDQHMGVVTAATSLIEALVKKN-PESYKTC--LPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPED 273 (938)
T ss_pred CccccceeeehHHHHHHHHHcC-CHHHhhh--HHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCC
Confidence 9988888888888888888653 3321111 1123333333322 1345788888888888754222
Q ss_pred -hhhhHHHhcCchHHHHHHHccCC-Cccc-----hhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChh
Q 010080 286 -VATSLLVKSGVLQLLVERLATSN-SLQL-----LIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR 358 (518)
Q Consensus 286 -~~~~~~~~~g~~~~Lv~lL~~~~-~~~v-----~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~ 358 (518)
.....+ ..++..++......+ +.++ .-.++.-.-+++..-|..-..+. ..+..|-++|.+...
T Consensus 274 ~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--------~~~~~Lg~fls~rE~ 343 (938)
T KOG1077|consen 274 PSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--------RAVNQLGQFLSHRET 343 (938)
T ss_pred chHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--------HHHHHHHHHhhcccc
Confidence 111111 123333333332111 1111 12333333344444333333222 477888899999999
Q ss_pred hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 010080 359 VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR 437 (518)
Q Consensus 359 ~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~ 437 (518)
.+|.-|.-.+..++... ..+.++-.+ ...++..|+ ..|..+|+.|+-.|.-+|... ....
T Consensus 344 NiRYLaLEsm~~L~ss~-~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~------------Nak~---- 404 (938)
T KOG1077|consen 344 NIRYLALESMCKLASSE-FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS------------NAKQ---- 404 (938)
T ss_pred cchhhhHHHHHHHHhcc-chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh------------hHHH----
Confidence 99999999999888763 334444444 778889997 789999999999999999742 2222
Q ss_pred CchHHHHHhhccCCHHHHH
Q 010080 438 GCLSGFIDLVRSADIEAAR 456 (518)
Q Consensus 438 g~i~~L~~lL~~~d~~~~~ 456 (518)
++..|++.|...|..+.+
T Consensus 405 -IV~elLqYL~tAd~sire 422 (938)
T KOG1077|consen 405 -IVAELLQYLETADYSIRE 422 (938)
T ss_pred -HHHHHHHHHhhcchHHHH
Confidence 245566777777766554
No 127
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.083 Score=57.60 Aligned_cols=281 Identities=17% Similarity=0.177 Sum_probs=156.5
Q ss_pred cCCHHHHHHHhc------CCCChHHHHH-HHHHHHHHhcC--ChHHHHHhcC--ChHHHHHhhcCCCCHHHHHHHHHHHH
Q 010080 124 AGAIPVLVQCLA------FGSPDEQLLE-AAWCLTNIAAG--KQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALG 192 (518)
Q Consensus 124 ~g~ip~Lv~~L~------~~~~~~~~~e-A~~~L~nia~~--~~~~~~~v~~--~v~~Lv~lL~~~~~~~v~~~a~~~L~ 192 (518)
.|+++.++..|. .++.+..|.+ |+..++++++- ....-+..++ .++.++-.+++ +.--++..|+|.++
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s-~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQS-PYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcC-chhHHHHHHHHHHH
Confidence 456777777776 2333334455 88899998831 1111112222 34555555555 56779999999999
Q ss_pred hhhCCChhhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCChhH
Q 010080 193 NVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEEL 269 (518)
Q Consensus 193 nla~d~~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~--~~~~l~~L~~lL~~~d~~v 269 (518)
.++. .++.+...-..++....+.|. +.+..++..|+-+|..+.++.. . ..+.+. ..+.++.|+++.+..+.+.
T Consensus 488 ~~~~--~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~-~-~~e~~~~hvp~~mq~lL~L~ne~End~ 563 (1010)
T KOG1991|consen 488 QFSS--IDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE-Q-ADEKVSAHVPPIMQELLKLSNEVENDD 563 (1010)
T ss_pred HHHh--ccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch-h-hhhhHhhhhhHHHHHHHHHHHhcchhH
Confidence 9983 234444444556667777776 6678999999999999887632 1 111111 2345555666666555554
Q ss_pred HHHHHHHHH-HhhcCCchhhhHHHhcCchHHHHHHHccC--CCccc---hhhh---hhhhhhhhcCCCcccceeeccCCC
Q 010080 270 TTEVAWVVV-YLSALSNVATSLLVKSGVLQLLVERLATS--NSLQL---LIPV---LRSLGNLVAGDSSTISDVLVPGHG 340 (518)
Q Consensus 270 ~~~a~~~L~-~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~--~~~~v---~~~a---l~~L~nl~~~~~~~~~~~i~~G~~ 340 (518)
+..++-.+- +.+..-......+. ..+.....+.+..+ .+... ...| |+++..|...-+..-+.+-+
T Consensus 564 Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~---- 638 (1010)
T KOG1991|consen 564 LTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ---- 638 (1010)
T ss_pred HHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH----
Confidence 444443321 22211011111111 12233334444321 11111 2223 33333333222111111110
Q ss_pred chhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 341 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 341 ~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
....++|++-.+|.+.-..+-.+++-.+.+++...++ +...+- |+++.+.+.++....+.-.+..-+|.|....
T Consensus 639 le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~-Isp~mW-~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~ 712 (1010)
T KOG1991|consen 639 LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKE-ISPIMW-GLLELILEVFQDDGIDYFTDMMPALHNYVTY 712 (1010)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcc-cCHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHhhheee
Confidence 1235677777788887788889999999998876532 322222 4788888888888788888888999988764
No 128
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.077 Score=57.33 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=125.6
Q ss_pred hCCCChhHHHHHH-HHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCc
Q 010080 218 MLPNKGSTVRTAA-WALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV 296 (518)
Q Consensus 218 l~~~~~~~~~~a~-~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~ 296 (518)
+.+.+..-+..|+ .+++++..|++ .....|-+++.+.+.|.++..-+-.-|...+...++.. + -+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d---------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--l---La 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED---------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--L---LA 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--H---HH
Confidence 4455444444444 55678887753 24667788888888899998887777777777655221 1 12
Q ss_pred hHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080 297 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 376 (518)
Q Consensus 297 ~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~ 376 (518)
++.+.+=| .++++.++..|+|+++-+=. ..++ ..+++.+.+++.++++.||+.|+.++.++-.-++
T Consensus 94 vNti~kDl-~d~N~~iR~~AlR~ls~l~~------~el~-------~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~ 159 (757)
T COG5096 94 VNTIQKDL-QDPNEEIRGFALRTLSLLRV------KELL-------GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK 159 (757)
T ss_pred HHHHHhhc-cCCCHHHHHHHHHHHHhcCh------HHHH-------HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH
Confidence 45566666 58999999999999998632 2233 3589999999999999999999999999976554
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 377 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 377 ~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
+ .+-+.|.+..+..++.+.++.|..+|..++..+..
T Consensus 160 ~---l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 160 D---LYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred h---hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 4 34567888999999999999999999999999864
No 129
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.084 Score=52.54 Aligned_cols=243 Identities=15% Similarity=0.184 Sum_probs=159.9
Q ss_pred HhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCC---------chhhhHHHhcCchHHHHHHHccCCCc------cchh
Q 010080 250 KVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS---------NVATSLLVKSGVLQLLVERLATSNSL------QLLI 314 (518)
Q Consensus 250 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~---------~~~~~~~~~~g~~~~Lv~lL~~~~~~------~v~~ 314 (518)
....+++.|+.+|.|++.+|.....-.|..|++-+ ..-++.+++.++++.|++-+. .-+. .-..
T Consensus 122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnve-RLdEsvkeea~gv~ 200 (536)
T KOG2734|consen 122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVE-RLDESVKEEADGVH 200 (536)
T ss_pred HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHH-HhhhcchhhhhhhH
Confidence 45789999999999999999999999999998632 134677788899999887664 1122 2345
Q ss_pred hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC--hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHH
Q 010080 315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL 392 (518)
Q Consensus 315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~--~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li 392 (518)
.++..+-|++.-.+.....+.+ +|.+..|+.-+... -...+..|.-+++-+...+.+....+-.-+++..++
T Consensus 201 ~~L~vveNlv~~r~~~~~~~~e------~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL 274 (536)
T KOG2734|consen 201 NTLAVVENLVEVRPAICTEIVE------QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLL 274 (536)
T ss_pred HHHHHHHHHHhccHHHHHHHHH------hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHH
Confidence 6788899999887776666654 46888777644332 224556677777777776666666666678888888
Q ss_pred HHhc---CCC------hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHH
Q 010080 393 HLLS---TSP------FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME 463 (518)
Q Consensus 393 ~lL~---~~~------~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~ 463 (518)
+-+. ..+ .+.-.+-.-+||.+...+ +.....+...++....=++.. .......++++|.
T Consensus 275 ~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~-----------~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd 342 (536)
T KOG2734|consen 275 RQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP-----------ANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLD 342 (536)
T ss_pred hhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh-----------hhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHH
Confidence 8772 222 234455666777777653 223444455455444334433 3444567888888
Q ss_pred HHHccCCCCcchhHHHhhchHHHHHHHhc-C---------CCHHHHHHHHHHHHhhcC
Q 010080 464 LVLRGMPNHEGTKLVEREDGIDAMERFQF-H---------ENEDLRNMANGLVDKYFG 511 (518)
Q Consensus 464 ~il~~~~~~~~~~~ie~~ggl~~l~~L~~-~---------~~~~i~~~a~~il~~~f~ 511 (518)
.++.+.+..+++..+-+.+|+..+-.+-. . .-.+.-+....||-..|.
T Consensus 343 ~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 343 HAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 88876555567888888999998766532 2 223444556666666554
No 130
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.85 E-value=0.15 Score=55.52 Aligned_cols=260 Identities=15% Similarity=0.108 Sum_probs=161.6
Q ss_pred CCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHH
Q 010080 137 GSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA 215 (518)
Q Consensus 137 ~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~ 215 (518)
++.+....-++.-+.+++..-.. ..+. +.+|.++.+... +...|++.|.-++.++.+--.. +.=...-..+.++
T Consensus 248 d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~D-dqdsVr~~a~~~~~~l~~l~~~--~~d~~~~~~~~l~ 322 (759)
T KOG0211|consen 248 DDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRD-DQDSVREAAVESLVSLLDLLDD--DDDVVKSLTESLV 322 (759)
T ss_pred ccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhc-chhhHHHHHHHHHHHHHHhcCC--chhhhhhhhHHHH
Confidence 33455555577777788754332 3333 578888888876 5678999999999888752111 0022334577788
Q ss_pred hhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC-CchhhhHHHhc
Q 010080 216 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKS 294 (518)
Q Consensus 216 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~~~~~ 294 (518)
......+..+.....-.++-++..-++.. ......+....++.++..+....+..-...++.. +.+....+...
T Consensus 323 ~~~~d~~~~v~~~~~~~~~~L~~~~~~~~-----~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~ 397 (759)
T KOG0211|consen 323 QAVEDGSWRVSYMVADKFSELSSAVGPSA-----TRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDS 397 (759)
T ss_pred HHhcChhHHHHHHHhhhhhhHHHHhcccc-----CcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchh
Confidence 88877777777666666666664432211 1224566677777766666655555444444432 11122333344
Q ss_pred CchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC
Q 010080 295 GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 374 (518)
Q Consensus 295 g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~ 374 (518)
.+++.+-.+. .+.+..++......+.++..-.+ +...+. -.+|.+...++...+.++....|.++.+-..
T Consensus 398 ~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~-------~llp~~~~~l~de~~~V~lnli~~ls~~~~v 467 (759)
T KOG0211|consen 398 SILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTIS-------ELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV 467 (759)
T ss_pred hhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCcc-------ccChhhhhhcchhhHHHHHhhHHHHHHHHhc
Confidence 5567766666 35666666665555555543222 111222 3778888899999999999999999888654
Q ss_pred CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 375 SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 375 ~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
++..--.......+|.+..+-......++.+..+.+--++..
T Consensus 468 ~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q 509 (759)
T KOG0211|consen 468 NDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ 509 (759)
T ss_pred cCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh
Confidence 432222233445788888888777888999998888887763
No 131
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.85 E-value=0.72 Score=47.54 Aligned_cols=298 Identities=18% Similarity=0.173 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCc----HHHHHHcCCHHHHHHHhcCC----CC-hHHHHH-HHHHHHHHhcCC-hHHHHH
Q 010080 95 AMQKRVNALRELRRLLSRFEFPP----IETALKAGAIPVLVQCLAFG----SP-DEQLLE-AAWCLTNIAAGK-QEETKA 163 (518)
Q Consensus 95 ~~~~~~~a~~~lr~lls~~~~~~----~~~~i~~g~ip~Lv~~L~~~----~~-~~~~~e-A~~~L~nia~~~-~~~~~~ 163 (518)
+.+.....+..+.+++.+..... .....+..++|.+.+..... .. +....+ +...+..+...- .+.-+.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55666777888888777553322 33344566999998887432 11 122233 445555554332 222233
Q ss_pred hc-CChHHHHH-----hhc--CC----CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-CChhHHHHHH
Q 010080 164 LL-PALPLLIA-----HLG--EK----SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAA 230 (518)
Q Consensus 164 v~-~~v~~Lv~-----lL~--~~----~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~ 230 (518)
++ .....++. -+. ++ .......-...+++.+-.+..-. -....+..++.+..+ .+...+..++
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~ 211 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSRLAAL 211 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 33 24444430 000 00 01122222233444443322110 111255666666554 3566777777
Q ss_pred HHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccC----ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc
Q 010080 231 WALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRA----DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA 305 (518)
Q Consensus 231 ~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~----d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~ 305 (518)
.+++.|+ ++-+... . ...++..+..-+ ... ......-..|...-+.-....... ..+..|+.+|.
T Consensus 212 ~~la~Lv-NK~~~~~--~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~ 281 (415)
T PF12460_consen 212 QLLASLV-NKWPDDD--D--LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLS 281 (415)
T ss_pred HHHHHHH-cCCCChh--h--HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhC
Confidence 8888777 3322211 1 124455554444 222 234556667777666542222222 34567888874
Q ss_pred cCCCccchhhhhhhhhhhhcCCCcc-------------cceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhc
Q 010080 306 TSNSLQLLIPVLRSLGNLVAGDSST-------------ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 372 (518)
Q Consensus 306 ~~~~~~v~~~al~~L~nl~~~~~~~-------------~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~ 372 (518)
+ +++-..+.+.++-+....++. .|.+. ..++|.|++.....+...+....-+|+++.
T Consensus 282 -~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-------~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll 351 (415)
T PF12460_consen 282 -S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-------TQVLPKLLEGFKEADDEIKSNYLTALSHLL 351 (415)
T ss_pred -C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-------HHHHHHHHHHHhhcChhhHHHHHHHHHHHH
Confidence 3 566778888888887663322 12222 246777777777766668888899999999
Q ss_pred cCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 373 AGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 373 ~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
.+-|..+-.---..++|.|++.|..++.+++..+..+|..+...
T Consensus 352 ~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 352 KNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 88765432211135899999999999999999999999999874
No 132
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.46 Score=54.40 Aligned_cols=316 Identities=15% Similarity=0.119 Sum_probs=179.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHH
Q 010080 127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL 205 (518)
Q Consensus 127 ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~ 205 (518)
|-+++++-+++....-...|+.-+.-|+...-+..+... ..||.|..+=.. ++..|+.....+.+.|..|+....+..
T Consensus 958 VYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yD-P~~~Vq~aM~sIW~~Li~D~k~~vd~y 1036 (1702)
T KOG0915|consen 958 VYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYD-PDKKVQDAMTSIWNALITDSKKVVDEY 1036 (1702)
T ss_pred HHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccC-CcHHHHHHHHHHHHHhccChHHHHHHH
Confidence 444555544433233345677777888765555555555 489999998877 789999988888888999876665554
Q ss_pred HhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH----HHHhccCChhH---HHHHHHHHH
Q 010080 206 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI----LRHLKRADEEL---TTEVAWVVV 278 (518)
Q Consensus 206 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L----~~lL~~~d~~v---~~~a~~~L~ 278 (518)
+. .++.-|+.-+.+....+++.+|.+|..|.++.. ..++ ..-+|-+ .+.+.+=.+.| -.-++.+|+
T Consensus 1037 ~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~---~~~~---~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1037 LN-EILDELLVNLTSKEWRVREASCLALADLLQGRP---FDQV---KEKLPELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred HH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC---hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 356667777777788999999999999998842 1111 2333333 33333222333 445677777
Q ss_pred HhhcC--C---chhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHh
Q 010080 279 YLSAL--S---NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL 353 (518)
Q Consensus 279 ~L~~~--~---~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL 353 (518)
.|+-. + ...-+.+++ -++|.|.+-=.-+.-.+++..++.++-.++..........+ ..++|.|+..+
T Consensus 1110 Kl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-------~~LIp~ll~~~ 1181 (1702)
T KOG0915|consen 1110 KLCVRICDVTNGAKGKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-------PKLIPLLLNAY 1181 (1702)
T ss_pred HHHhhhcccCCcccHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-------hHHHHHHHHHc
Confidence 66631 1 111122221 23344332100144566788888888888877666554443 35777777776
Q ss_pred ccChh-----------hhHHHHHHHHH-HhccCCH--HHHHHHHh-------CCCHHHHHHHhcCC-ChhHHHHHHHHHH
Q 010080 354 KSEHR-----------VLKKEAAWVLS-NIAAGSV--EHKQLIHS-------SEALALLLHLLSTS-PFDIKKEVAYVLG 411 (518)
Q Consensus 354 ~~~~~-----------~i~~~a~~~Ls-nl~~~~~--~~~~~li~-------~~~i~~Li~lL~~~-~~~v~~eA~~aL~ 411 (518)
..-.+ .+..+|.-.+. +++.++| +.+..+++ ..++|.+++++..+ ....|.-++..++
T Consensus 1182 s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~ 1261 (1702)
T KOG0915|consen 1182 SELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFIS 1261 (1702)
T ss_pred cccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHH
Confidence 55433 22333333332 2222332 11222221 13677777777543 3345555666666
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 412 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 412 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
-++... ...-+|. +. ..+..++..+++.++.+.+..-.+...+++..
T Consensus 1262 ~L~~r~-~~emtP~-----sg-----Kll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1262 LLVQRL-GSEMTPY-----SG-----KLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHHh-ccccCcc-----hh-----HHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 665431 0001221 11 24666777777777777776666676666654
No 133
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.81 E-value=0.06 Score=55.22 Aligned_cols=129 Identities=10% Similarity=0.105 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC
Q 010080 140 DEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 219 (518)
Q Consensus 140 ~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~ 219 (518)
+.++.|++.+++.++..+. ..+.+-.+|..|-.+|.+ +....+-.|+++|..|+...|+.. ..+ =+.+-.++.
T Consensus 278 emV~lE~Ar~v~~~~~~nv-~~~~~~~~vs~L~~fL~s-~rv~~rFsA~Riln~lam~~P~kv---~vc--N~evEsLIs 350 (898)
T COG5240 278 EMVFLEAARAVCALSEENV-GSQFVDQTVSSLRTFLKS-TRVVLRFSAMRILNQLAMKYPQKV---SVC--NKEVESLIS 350 (898)
T ss_pred hhhhHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhhCCcee---eec--ChhHHHHhh
Confidence 5567899999988885431 111122467788888887 678899999999999998665421 111 123444555
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhh
Q 010080 220 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 281 (518)
Q Consensus 220 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 281 (518)
+.+..+ +++++..|......+. .+- .-..||.+++=+.++-.-+..+++..|+.+-
T Consensus 351 d~Nr~I---styAITtLLKTGt~e~-idr--Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~F 406 (898)
T COG5240 351 DENRTI---STYAITTLLKTGTEET-IDR--LVNLIPSFVHDMSDGFKIIAIDALRSLSLLF 406 (898)
T ss_pred cccccc---hHHHHHHHHHcCchhh-HHH--HHHHHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence 555444 3444555543321111 110 1133344443333444456677777776655
No 134
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.74 E-value=0.087 Score=51.73 Aligned_cols=194 Identities=22% Similarity=0.253 Sum_probs=117.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHh--cCC
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETAL--KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIA--AGK 157 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i--~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia--~~~ 157 (518)
++|...|..+.......+..|+..+.+++.....+ +.+- ...+++.+.+.++.+... .+.-|+.++.-++ -|.
T Consensus 43 ~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~--d~v~~~~~tL~~~~~k~lkkg~~~-E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 43 DKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP--DFVEDRRETLLDALLKSLKKGKSE-EQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHhhhcCC
Confidence 45777777666666889999999999999876432 2232 356788888888876653 3455666666665 233
Q ss_pred hHHHHHhc-CChHHHHHhhcCCC-CHHHHHHHHHHHHhhhC---CChhhHHHHHhcCChhHHHh--hhC----------C
Q 010080 158 QEETKALL-PALPLLIAHLGEKS-SSPVAEQCAWALGNVAG---EGEEFRNVLLSQGALPPLAR--MML----------P 220 (518)
Q Consensus 158 ~~~~~~v~-~~v~~Lv~lL~~~~-~~~v~~~a~~~L~nla~---d~~~~r~~~~~~g~i~~L~~--ll~----------~ 220 (518)
......++ ...|.|...+...+ ...++..|+.||+-++. ..+......++ .+..+.. ..+ .
T Consensus 120 g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 120 GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence 34455666 58888888887633 46777888888887653 22222221111 1221111 111 1
Q ss_pred CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 221 NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 221 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
++..+...|+-+-+-|...- |...... .....+|.|..+|.++|.+|+..|--+|+-|..
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~-~~~~~~~-~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTL-PDSKLED-LLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred CccHHHHHHHHHHHHHHhcC-CHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 13456655554434343221 1111111 124689999999999999999998888876654
No 135
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.74 E-value=0.96 Score=47.33 Aligned_cols=288 Identities=18% Similarity=0.184 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhh
Q 010080 96 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHL 175 (518)
Q Consensus 96 ~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL 175 (518)
...+++|+..+++.+...+-.++.. +....-.++..+.+.+.+..+...|..+..++....... =-.+...+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~---R~~fF~~I 75 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLM---RAEFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHH---HHHHHHHH
Confidence 4577888888888777654433322 333334566655556665556667777775544311110 01222223
Q ss_pred cCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC---------------------------ChhHHHH
Q 010080 176 GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN---------------------------KGSTVRT 228 (518)
Q Consensus 176 ~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~---------------------------~~~~~~~ 228 (518)
..+..++....-+.+|..++.++... ...+.++.|.|...|... +......
T Consensus 76 ~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 76 SDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred hcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence 33344444455556666666666555 225777888888776421 1112222
Q ss_pred HHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc-
Q 010080 229 AAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT- 306 (518)
Q Consensus 229 a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~- 306 (518)
..-.+.|+.+........+. ..+.+..++.+-.. .+++....++-.|-.+..... +-.+.++.++..|..
T Consensus 154 ll~~l~nviKfn~~~l~e~~--i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~------iP~~sl~~~i~vLCsi 225 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDEDE--ISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD------IPSESLSPCIEVLCSI 225 (464)
T ss_pred HHHHHHHHHhcCCCCCCHHH--HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc------CChHHHHHHHHHHhhH
Confidence 23333333333211111111 12333333333221 112222222222222222100 001222344444431
Q ss_pred CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc--c----ChhhhHHHHHHHHHHhccCCHHHHH
Q 010080 307 SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK--S----EHRVLKKEAAWVLSNIAAGSVEHKQ 380 (518)
Q Consensus 307 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~--~----~~~~i~~~a~~~Lsnl~~~~~~~~~ 380 (518)
++..+...++-+++.|++...- .+..+..|..+|. + .+..+.+.|...++-+..+..++..
T Consensus 226 ~~~~~l~~~~w~~m~nL~~S~~-------------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~ 292 (464)
T PF11864_consen 226 VNSVSLCKPSWRTMRNLLKSHL-------------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGY 292 (464)
T ss_pred hcccccchhHHHHHHHHHcCcc-------------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCc
Confidence 2333566788889999985542 1346778888883 2 2346677899999988877633332
Q ss_pred HHHhC---CCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 381 LIHSS---EALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 381 ~li~~---~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
.-+.. -++|.+...|+.++..+-.+....+.++.
T Consensus 293 ~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 293 PSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 22222 27899999999888888888888888887
No 136
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.63 E-value=0.22 Score=54.79 Aligned_cols=247 Identities=17% Similarity=0.204 Sum_probs=150.1
Q ss_pred hhchHHHHHHHhcc-----CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc---cCCC----ccchhhhhh
Q 010080 251 VDGLLDAILRHLKR-----ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA---TSNS----LQLLIPVLR 318 (518)
Q Consensus 251 ~~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~---~~~~----~~v~~~al~ 318 (518)
..|++..++.++.+ .+.+.....+..|.+++. -..+.+.+++.|+++.|+..|. ..+. ..+....+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 45777777777763 344677777888888776 4678888999999999988774 2323 456666777
Q ss_pred hhhhhhcCCCcccc----eeecc-CC-CchhhhHHHHHHHhccC----hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCH
Q 010080 319 SLGNLVAGDSSTIS----DVLVP-GH-GITDQVIAVLVKCLKSE----HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEAL 388 (518)
Q Consensus 319 ~L~nl~~~~~~~~~----~~i~~-G~-~~~~~~l~~L~~lL~~~----~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i 388 (518)
++.-+......... ..... |. .-...-+..|++.+.+. ++.+....+.+|.+|+.|+.+..+.++++ +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 77766644332111 00000 00 00123466667766654 57899999999999999999999999885 3
Q ss_pred HHHHHHhcC-----CChhHHHHHHHHHHHhcCCCCC-CCCCchhHHHHHHHHHhcCchHHHHHhhccCCH--------HH
Q 010080 389 ALLLHLLST-----SPFDIKKEVAYVLGNLCVSPTE-GEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADI--------EA 454 (518)
Q Consensus 389 ~~Li~lL~~-----~~~~v~~eA~~aL~nl~~~~~~-~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~--------~~ 454 (518)
.+.++.=.- .+..+. +-+++.++.+-.. ..| ..-.+.+++.|++...++.|...-| +-
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G-----~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eW 343 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNG-----NRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEW 343 (802)
T ss_pred HHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCch-----HHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHH
Confidence 333332211 122232 4444455443211 112 2445678899999999988775322 22
Q ss_pred --------HHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHH-hcCCCHHHHHHHHHHHHhhcC
Q 010080 455 --------ARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFHENEDLRNMANGLVDKYFG 511 (518)
Q Consensus 455 --------~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L-~~~~~~~i~~~a~~il~~~f~ 511 (518)
+..+|+.|.-+..+.. ..+.....+++..+..| |-....+|-..|..+|+..-.
T Consensus 344 k~~l~~psLp~iL~lL~GLa~gh~---~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 344 KEFLSRPSLPYILRLLRGLARGHE---PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHhcCCcHHHHHHHHHHHHhcCH---HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2244555555444322 23444556777777776 334477899999999986544
No 137
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.62 E-value=0.49 Score=51.40 Aligned_cols=223 Identities=12% Similarity=0.131 Sum_probs=146.0
Q ss_pred cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchh
Q 010080 264 RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITD 343 (518)
Q Consensus 264 ~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~ 343 (518)
+..|.+...+.|++++.+.......+.. .-.+...+..+..+..+.++..|++++...+.- .-... ...
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~-------~~p 529 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLS-------LQP 529 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccc-------cch
Confidence 5567777799999998886433222221 123455566665566677888899988887721 11121 235
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh--cCCChhHHHHHHHHHHHhcCCCCCCC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL--STSPFDIKKEVAYVLGNLCVSPTEGE 421 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL--~~~~~~v~~eA~~aL~nl~~~~~~~~ 421 (518)
+++..|.++....+..+-.-.+-+|+..+.-+++.. .-.++.+.|..+.+. .+.|+.|...+--++-.++......
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~- 607 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY- 607 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-
Confidence 788888888877777777778888888888776654 345667889888887 3567777776666666655421111
Q ss_pred CCchhHHHHHHHHHhcCchHHHHHhhccCC----HHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHH-hcCCCH
Q 010080 422 GKPKLIQEHLVSLVGRGCLSGFIDLVRSAD----IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFHENE 496 (518)
Q Consensus 422 ~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d----~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L-~~~~~~ 496 (518)
| | ...-+||.|++.|..++ +..+..+++.|..++++.+.. -...+. +-.++++.++ .++++.
T Consensus 608 g-~----------m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p-L~~~l~-~~~FpaVak~tlHsdD~ 674 (1005)
T KOG2274|consen 608 G-P----------MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP-LPNLLI-CYAFPAVAKITLHSDDH 674 (1005)
T ss_pred c-c----------hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC-ccHHHH-HHHhHHhHhheeecCCh
Confidence 1 1 12347999999999877 778899999999999987652 222221 2234555443 556666
Q ss_pred HHHHHHHHHHHhhcCc
Q 010080 497 DLRNMANGLVDKYFGE 512 (518)
Q Consensus 497 ~i~~~a~~il~~~f~~ 512 (518)
+.-..|.+.+.-|.+.
T Consensus 675 ~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 675 ETLQNATECLRALISV 690 (1005)
T ss_pred HHHHhHHHHHHHHHhc
Confidence 7777777777655443
No 138
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.61 E-value=0.013 Score=46.69 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCChhhHHHHHhc
Q 010080 144 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ 208 (518)
Q Consensus 144 ~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~ 208 (518)
...+.+|+|++..++..-+.+. |++|.++..-.- ..+|-++|.|+||+.|++.++++++..+.+-
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567899999999888888887 799999987533 3679999999999999999999998887653
No 139
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.56 E-value=1.2 Score=46.17 Aligned_cols=291 Identities=16% Similarity=0.152 Sum_probs=154.3
Q ss_pred HhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCC
Q 010080 163 ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP 242 (518)
Q Consensus 163 ~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~ 242 (518)
......|.|-.-|++ .-..|.-.++.++..++..+ .-+..++ ..+..|-.+|.++....+-.|+..|..|+.. .|
T Consensus 261 ~~~q~rpfL~~wls~-k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~-~P 335 (898)
T COG5240 261 ALLQLRPFLNSWLSD-KFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMK-YP 335 (898)
T ss_pred HHHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhh-CC
Confidence 333445666666655 44678888888877776533 1112222 2466777888899999999999999999854 23
Q ss_pred CchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhh
Q 010080 243 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN 322 (518)
Q Consensus 243 ~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~n 322 (518)
+. ..-+=+-+-.++.+.+..+-..|.-+|.. .|.++.++.++.. ++.++.-+. .+-..+...|++.|++
T Consensus 336 ~k------v~vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~~--I~sfvhD~S-D~FKiI~ida~rsLsl 404 (898)
T COG5240 336 QK------VSVCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVNL--IPSFVHDMS-DGFKIIAIDALRSLSL 404 (898)
T ss_pred ce------eeecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHHH--HHHHHHhhc-cCceEEeHHHHHHHHh
Confidence 21 12333445566666666665555444432 3566666665532 444444331 2222345677777777
Q ss_pred hhcCCCcccceeeccCCCchhhhHHHHHHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChh
Q 010080 323 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFD 401 (518)
Q Consensus 323 l~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~ 401 (518)
..... . ...+..|...|. .+....++.+.-+|+.+....|+-... ++..|+..+.+.++
T Consensus 405 ~Fp~k---~-----------~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey- 464 (898)
T COG5240 405 LFPSK---K-----------LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY- 464 (898)
T ss_pred hCcHH---H-----------HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch-
Confidence 64322 1 124455555443 344567777777777776655443332 34456666654432
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhh
Q 010080 402 IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVERE 481 (518)
Q Consensus 402 v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ 481 (518)
-+.++..|+-+-.. +...|++ -.+++++ .+-+--.+.-+...|+.+|...--...+....+-+
T Consensus 465 -~~I~vrIL~iLG~E---gP~a~~P-~~yvrhI---------yNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv--- 527 (898)
T COG5240 465 -HQITVRILGILGRE---GPRAKTP-GKYVRHI---------YNRLILENNIVRSAAVQALSKFALNISDVVSPQSV--- 527 (898)
T ss_pred -hHHHHHHHHHhccc---CCCCCCc-chHHHHH---------HHHHHHhhhHHHHHHHHHHHHhccCccccccHHHH---
Confidence 23355555554332 1111211 1233332 22222233344455555554442222221111212
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080 482 DGIDAMERFQFHENEDLRNMANGLVDK 508 (518)
Q Consensus 482 ggl~~l~~L~~~~~~~i~~~a~~il~~ 508 (518)
...|..+.++.+++++++|.-.++.
T Consensus 528 --~~~lkRclnD~DdeVRdrAsf~l~~ 552 (898)
T COG5240 528 --ENALKRCLNDQDDEVRDRASFLLRN 552 (898)
T ss_pred --HHHHHHHhhcccHHHHHHHHHHHHh
Confidence 2346667788888888888776654
No 140
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.53 E-value=0.044 Score=54.98 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=85.5
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhC----CChhhHHHHHh-cC-ChhHHHhhhC---CCChhHHHHHHHHHHHhh
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAG----EGEEFRNVLLS-QG-ALPPLARMML---PNKGSTVRTAAWALSNLI 237 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~----d~~~~r~~~~~-~g-~i~~L~~ll~---~~~~~~~~~a~~~L~nL~ 237 (518)
+...++..|.+ .....++.++|++|||.. .-|..+..--. .| .+..+++.-. ..+..+..++..+|.|+.
T Consensus 434 aa~~il~sl~d-~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll 512 (728)
T KOG4535|consen 434 AANAILMSLED-KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL 512 (728)
T ss_pred HHHHHHHHhhh-HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence 44444455544 457889999999999963 11111111000 01 1122222111 224566777777777766
Q ss_pred cCCC---CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHH-HhcCchHHHHHHHccCCCccch
Q 010080 238 KGPD---PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL-VKSGVLQLLVERLATSNSLQLL 313 (518)
Q Consensus 238 ~~~~---~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~-~~~g~~~~Lv~lL~~~~~~~v~ 313 (518)
..-. +....+++ +......+....-...-.|+-++|.+++||..+..-..+.+ ...-+++.|..++.++.+.+++
T Consensus 513 Qvlq~i~~~~~~e~~-~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVR 591 (728)
T KOG4535|consen 513 QFLQPIEKPTFAEII-EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVR 591 (728)
T ss_pred HHHHHhhhccHHHHH-HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEe
Confidence 4311 01111111 11111111122223445789999999999997644322222 1234678888888889999999
Q ss_pred hhhhhhhhhhhcC
Q 010080 314 IPVLRSLGNLVAG 326 (518)
Q Consensus 314 ~~al~~L~nl~~~ 326 (518)
+.|..+|..-.+.
T Consensus 592 i~AA~aL~vp~~r 604 (728)
T KOG4535|consen 592 IRAAAALSVPGKR 604 (728)
T ss_pred ehhhhhhcCCCCc
Confidence 9999888865543
No 141
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.52 E-value=0.27 Score=53.66 Aligned_cols=269 Identities=16% Similarity=0.173 Sum_probs=167.8
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC-ChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d-~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
.++.+..+++. ...+++..++.-...++.. +..++..+....++|.+-.+..+.+..+....+....++.--. |++.
T Consensus 356 ~~~~~~~l~~~-~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~-~k~~ 433 (759)
T KOG0211|consen 356 LVPPVSNLLKD-EEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPIL-PKER 433 (759)
T ss_pred chhhHHHHhcc-hhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccC-CcCc
Confidence 46666666665 4556666555544444431 2223344455556777777777777777766665555554211 1111
Q ss_pred hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080 246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 325 (518)
. ....+|.+...+++.+++|+.+..|.++.+-...+..--.......++.++.+-. .....++...++.+--++.
T Consensus 434 --t--i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~-d~~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 434 --T--ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAE-DLLWRVRLAILEYIPQLAL 508 (759)
T ss_pred --C--ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhcc-chhHHHHHHHHHHHHHHHH
Confidence 1 3578888899999999999999999887665433322222334455677776542 3345666666666666553
Q ss_pred CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc--CCHHHHHHHHhCCCHHHHHHHhcCCChhHH
Q 010080 326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA--GSVEHKQLIHSSEALALLLHLLSTSPFDIK 403 (518)
Q Consensus 326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~--~~~~~~~~li~~~~i~~Li~lL~~~~~~v~ 403 (518)
... ..+++ ...-+.+...+.+....+++.|+..+--++- |..-.+ ...+|.++.....++..+|
T Consensus 509 q~~---~~~~~------~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~-----~~~i~k~L~~~~q~~y~~R 574 (759)
T KOG0211|consen 509 QLG---VEFFD------EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWAR-----LEEIPKLLAMDLQDNYLVR 574 (759)
T ss_pred hhh---hHHhh------HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhH-----HHhhHHHHHHhcCcccchh
Confidence 322 11221 2344555556666667888888887777764 321122 2357777777777788899
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 404 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 404 ~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
...+.+|.-++.-. | +.+.....++.+..+..++.+.+...++..+..++...
T Consensus 575 ~t~l~si~~la~v~----g---------~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 575 MTTLFSIHELAEVL----G---------QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL 627 (759)
T ss_pred hHHHHHHHHHHHHh----c---------cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence 88888887765431 2 23344557899999999999999999999999888754
No 142
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.1 Score=55.08 Aligned_cols=175 Identities=18% Similarity=0.168 Sum_probs=109.6
Q ss_pred chHHHHHHHhccCChhHHHHHHHH--HHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcc
Q 010080 253 GLLDAILRHLKRADEELTTEVAWV--VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST 330 (518)
Q Consensus 253 ~~l~~L~~lL~~~d~~v~~~a~~~--L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~ 330 (518)
++=|.+-+++.+.|+-++..-..+ +.|...+++ +++..|+..-.++.+.+|+..|.-+||-++..+++
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~- 588 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE- 588 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch---------hhHHHhhcccccccchHHHHHHHHHheeeEecChh-
Confidence 445666777888887777665444 456555443 55666666644577889999999999999887764
Q ss_pred cceeeccCCCchhhhHHHHHHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHH
Q 010080 331 ISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV 409 (518)
Q Consensus 331 ~~~~i~~G~~~~~~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~a 409 (518)
.+|..+.+|. +.++.||..|+.+|+-.|+|+-... .+..|--+..+...-||+-|+.+
T Consensus 589 --------------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa 647 (929)
T KOG2062|consen 589 --------------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIA 647 (929)
T ss_pred --------------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHH
Confidence 4455566664 5678999999999999998762211 12223333345555699999999
Q ss_pred HHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHH-HHHHHHHHHHHHccC
Q 010080 410 LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEA-ARLGLQFMELVLRGM 469 (518)
Q Consensus 410 L~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~-~~~~l~~l~~il~~~ 469 (518)
++-+....++. ..|+ -.|+.+.|...+..+..+. .+...-.-+-|+..+
T Consensus 648 ~amIm~Q~t~~-~~pk----------v~~frk~l~kvI~dKhEd~~aK~GAilAqGildaG 697 (929)
T KOG2062|consen 648 LAMIMIQQTEQ-LCPK----------VNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAG 697 (929)
T ss_pred HHHHHHhcccc-cCch----------HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcC
Confidence 98886543211 1121 1244556667776655543 333333334455544
No 143
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.44 E-value=0.64 Score=50.53 Aligned_cols=308 Identities=14% Similarity=0.091 Sum_probs=163.9
Q ss_pred CCHHHHHHHHHHHHHHhcCC-CCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHH
Q 010080 94 GAMQKRVNALRELRRLLSRF-EFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLL 171 (518)
Q Consensus 94 ~~~~~~~~a~~~lr~lls~~-~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~L 171 (518)
.-|.....|...+-++.+.. .+++... -.+...+..+..+.++-....|..+++..++ ........ +.+..|
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~----~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQ----HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL 535 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHH----HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence 34445555665555554432 1222211 1234445555544444454557777766662 11122222 355666
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC--CCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 010080 172 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--PNKGSTVRTAAWALSNLIKGPDPKPATELI 249 (518)
Q Consensus 172 v~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i 249 (518)
+++... ...++--..+.+|+-.+.-++++.. -.+.-+.|..+.+.. ++++.+...+--++-.|+....... .+
T Consensus 536 ~qlas~-~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g--~m- 610 (1005)
T KOG2274|consen 536 LQLASK-SSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG--PM- 610 (1005)
T ss_pred HHHccc-ccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc--ch-
Confidence 666665 5678888888999999887766543 345556777666543 4577666666666666665321111 12
Q ss_pred HhhchHHHHHHHhccCC----hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080 250 KVDGLLDAILRHLKRAD----EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 250 ~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 325 (518)
....+|.|++.+..++ .....-++-.|.-+.++.+.-....+-.-++|.+.+....+.+..+...+--||..+..
T Consensus 611 -~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 611 -QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred -HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 3578999999998666 45555555666656664333333233334677777766556666777777777777766
Q ss_pred CCCcccceeec-cCCCchhhhHHHHHHHhccChh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh-cCCChhH
Q 010080 326 GDSSTISDVLV-PGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDI 402 (518)
Q Consensus 326 ~~~~~~~~~i~-~G~~~~~~~l~~L~~lL~~~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v 402 (518)
.+.+|+..--+ .|+. --.++.++.++|+.... ..-..+-..+..|+..-+.....-++. ++...+.-| +.....+
T Consensus 690 ~~~eq~~t~~~e~g~~-~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsv 767 (1005)
T KOG2274|consen 690 VTLEQLLTWHDEPGHN-LWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSV 767 (1005)
T ss_pred cCHHHHHhhccCCCcc-HHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHH
Confidence 65544432222 2211 11356666777754322 211223333334433322222222221 222333333 4455566
Q ss_pred HHHHHHHHHHhcC
Q 010080 403 KKEVAYVLGNLCV 415 (518)
Q Consensus 403 ~~eA~~aL~nl~~ 415 (518)
-..-..+++++..
T Consensus 768 iQsLi~VfahL~~ 780 (1005)
T KOG2274|consen 768 IQSLIMVFAHLVH 780 (1005)
T ss_pred HHHHHHHHHHHhh
Confidence 6666677777655
No 144
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.36 E-value=0.0088 Score=47.61 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=62.2
Q ss_pred hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080 315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL 394 (518)
Q Consensus 315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l 394 (518)
-++.+|+.++.+-.......++ .++++++..+.++++.||..||-+|.|++......+-.-+ ..+++.|..+
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~-------~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl 76 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLD-------EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKL 76 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHH-------HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3455555555443333444443 5899999999999999999999999999865433222111 2488899999
Q ss_pred hcCCChhHHHHHHHHHHHh
Q 010080 395 LSTSPFDIKKEVAYVLGNL 413 (518)
Q Consensus 395 L~~~~~~v~~eA~~aL~nl 413 (518)
+.+.++.||..| +.|-++
T Consensus 77 ~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 77 SADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HcCCchhHHHHH-HHHHHH
Confidence 999999988776 444443
No 145
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=2.2 Score=47.05 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCC
Q 010080 101 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSS 180 (518)
Q Consensus 101 ~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~ 180 (518)
..+..+...|.+. .|.....+.=+++.+...++++. --++-.|+|.++.+++-+-..-.-...++....+.|.++.+
T Consensus 440 ~~vgsl~~~L~K~--s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~ 516 (1010)
T KOG1991|consen 440 RMVGSLASILLKK--SPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNE 516 (1010)
T ss_pred HHHHHHHHHHccC--CchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCc
Confidence 3344444545443 34334444444555555555433 23556699999999954322222222456666666664467
Q ss_pred HHHHHHHHHHHHhhhCCChhhHHHHHhc--CChhHHHhhhC
Q 010080 181 SPVAEQCAWALGNVAGEGEEFRNVLLSQ--GALPPLARMML 219 (518)
Q Consensus 181 ~~v~~~a~~~L~nla~d~~~~r~~~~~~--g~i~~L~~ll~ 219 (518)
..|+-.|+-||.-+..+.+....++-.+ +.+..|+++.+
T Consensus 517 lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 517 LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN 557 (1010)
T ss_pred CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence 8899999999999988665443433332 23444444444
No 146
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.31 E-value=0.067 Score=48.07 Aligned_cols=92 Identities=24% Similarity=0.252 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhch-HHHH
Q 010080 180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGL-LDAI 258 (518)
Q Consensus 180 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~-l~~L 258 (518)
++.++..++-++|-++.-.+..- ...+|.+...|.++++.++++|+.+|+.|.... ++...|- +..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-------~ik~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-------MIKVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-------ceeehhhhhHHH
Confidence 47899999999999987544332 235788999999999999999999999998653 2222343 4788
Q ss_pred HHHhccCChhHHHHHHHHHHHhhcC
Q 010080 259 LRHLKRADEELTTEVAWVVVYLSAL 283 (518)
Q Consensus 259 ~~lL~~~d~~v~~~a~~~L~~L~~~ 283 (518)
+.++.++|++|+..|..++..+...
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999874
No 147
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.2 Score=53.40 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=47.1
Q ss_pred hHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 345 ~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
.+..+.+.+.=++..+|..|.-++.++.++++.-.. .+.-.|.+.+.+.|..+|..|.+.+.++-
T Consensus 467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 444555555556678899999999999866533222 24445677778899999999999999986
No 148
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.41 Score=52.94 Aligned_cols=248 Identities=16% Similarity=0.158 Sum_probs=142.1
Q ss_pred CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhhcCCCCCc
Q 010080 166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDPKP 244 (518)
Q Consensus 166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~~~~ 244 (518)
..+..|+.-|++ .+..|+-.|+..+|.++...| ..+...+|...+.++... +....-.++-+|..|+...--.|
T Consensus 341 ~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rlp----~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRLP----PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccC-CcchhhHHHHHHHHHHHccCc----HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 356666677766 678999999999999998655 122222445555655533 46777899999999997532222
Q ss_pred hhhHHHhhchHHHHHHHhccCC--------hhHHHHHHHHHHHhhcC-CchhhhHHHhcCchHHH-HHHHccCCCccchh
Q 010080 245 ATELIKVDGLLDAILRHLKRAD--------EELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLL-VERLATSNSLQLLI 314 (518)
Q Consensus 245 ~~~~i~~~~~l~~L~~lL~~~d--------~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~~~~L-v~lL~~~~~~~v~~ 314 (518)
. . ...++|.+++-|..++ ..|+..||.++..+++. ++...+-+.. .+.+.| ...+ -+.+..++.
T Consensus 416 s--~--l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~Al-FDrevncRR 489 (1133)
T KOG1943|consen 416 S--L--LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVAL-FDREVNCRR 489 (1133)
T ss_pred H--H--HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHh-cCchhhHhH
Confidence 1 2 2478888888776443 34666665555555543 2222222211 112222 2222 356777788
Q ss_pred hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080 315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL 394 (518)
Q Consensus 315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l 394 (518)
.|..++...+-...+. - .+++. +...+.-....+..+...++--.+..+..++.++++ |+.-
T Consensus 490 AAsAAlqE~VGR~~n~-----p-------~Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~ 551 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNF-----P-------HGISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTK 551 (1133)
T ss_pred HHHHHHHHHhccCCCC-----C-------Cchhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhc
Confidence 8877777655321111 0 12221 111122222344444555555555555666555543 2222
Q ss_pred -hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHH
Q 010080 395 -LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 456 (518)
Q Consensus 395 -L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~ 456 (518)
+.+=|..+|.-|+|+|.+++.. . -.....+.++++++...++|.....
T Consensus 552 Kv~HWd~~irelaa~aL~~Ls~~------~--------pk~~a~~~L~~lld~~ls~~~~~r~ 600 (1133)
T KOG1943|consen 552 KVCHWDVKIRELAAYALHKLSLT------E--------PKYLADYVLPPLLDSTLSKDASMRH 600 (1133)
T ss_pred ccccccHHHHHHHHHHHHHHHHh------h--------HHhhcccchhhhhhhhcCCChHHhh
Confidence 5566888999999999998652 1 2334557788888887777776544
No 149
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.16 E-value=0.015 Score=47.68 Aligned_cols=69 Identities=23% Similarity=0.318 Sum_probs=58.2
Q ss_pred chHHHHHhh-ccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLV-RSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL-~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~ 509 (518)
++..|+++| .+.|+.++.+|+.=|..+.+..|+ ++..+++.|+-+.+-.|..|+|++|+..|..-+.++
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~--gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN--GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG--GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh--HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 688899999 456888899999999999988765 578889999999999999999999999997777654
No 150
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.15 E-value=0.11 Score=52.32 Aligned_cols=185 Identities=17% Similarity=0.166 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC---CCCCchhhHHHhh-chH
Q 010080 180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG---PDPKPATELIKVD-GLL 255 (518)
Q Consensus 180 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~---~~~~~~~~~i~~~-~~l 255 (518)
+.-++..|.++++-+.-+..-..+......+...++..|.+..-..+..+.|+++|+... +-|.+....-... -.+
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll 483 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLL 483 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHH
Confidence 444677777787777654333334444445566666666666778899999999998753 2222211110111 122
Q ss_pred HHHHHHhc--c-CChhHHHHHHHHHHHhhcCCchhhhHHHhc-------CchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080 256 DAILRHLK--R-ADEELTTEVAWVVVYLSALSNVATSLLVKS-------GVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 256 ~~L~~lL~--~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~-------g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 325 (518)
..+.+.-. + ....|..++..+|.++.. ..+.+.+. |....+..........+|+..+|.++||+..
T Consensus 484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 484 LKMLRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 22222222 1 234688888888888774 22222222 1122222211123456889999999999997
Q ss_pred CCCcccceeeccCCCchhhhHHHHHHHhc-cChhhhHHHHHHHHHHhcc
Q 010080 326 GDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAA 373 (518)
Q Consensus 326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~ 373 (518)
+.....+..- +...+++.|..++. +.+-+||..|+.+|+--..
T Consensus 560 n~a~~lq~~~-----wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 560 NPALPLQTAP-----WASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred CccccccCCC-----chHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 7643222111 12357888888885 4567999999999987654
No 151
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=1.3 Score=50.86 Aligned_cols=350 Identities=16% Similarity=0.149 Sum_probs=168.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHh-c-CCCChHHHHH----HHHHHHHHhcC-
Q 010080 84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCL-A-FGSPDEQLLE----AAWCLTNIAAG- 156 (518)
Q Consensus 84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L-~-~~~~~~~~~e----A~~~L~nia~~- 156 (518)
+..++.++.+..--.+..++-+|++++...+. +.+.+ -+|.+-..+ . .++-.+-+++ ++.+|+.++-.
T Consensus 1041 l~eLL~~lt~kewRVReasclAL~dLl~g~~~---~~~~e--~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1041 LDELLVNLTSKEWRVREASCLALADLLQGRPF---DQVKE--KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHcCCCh---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566777777777888999999999887543 34443 344443333 2 2333333444 45666666521
Q ss_pred ----ChHHHHHhc-CChHHHHHh-hcCCCCHHHHHHHHHHHHhhhCCChh-hHHHHHhcCChhHHHhhhCCCChhHHHHH
Q 010080 157 ----KQEETKALL-PALPLLIAH-LGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMMLPNKGSTVRTA 229 (518)
Q Consensus 157 ----~~~~~~~v~-~~v~~Lv~l-L~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~ll~~~~~~~~~~a 229 (518)
+....+.++ .++|.|+.- ..+ .-.+++..++.++..++..+.. .+..+ ...||.|+.....-.+.+.-..
T Consensus 1116 ~d~~~~~~~~~~l~~iLPfLl~~gims-~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1116 CDVTNGAKGKEALDIILPFLLDEGIMS-KVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred cccCCcccHHHHHHHHHHHHhccCccc-chHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHH
Confidence 111222333 367777752 123 5689999999999999875433 11111 1234555555443333332222
Q ss_pred HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCch-----hhhHHH---------h-c
Q 010080 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV-----ATSLLV---------K-S 294 (518)
Q Consensus 230 ~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~-----~~~~~~---------~-~ 294 (518)
.-=+.|.-...-...........+...++-.++++-|.+++.+..--+..+.+++-. .+..++ + .
T Consensus 1193 s~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt 1272 (1702)
T KOG0915|consen 1193 SLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT 1272 (1702)
T ss_pred HHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC
Confidence 111122111000000001112234445555666666666666655555555543210 011110 0 0
Q ss_pred C----chHHHHHHHccCCCccchhhhhhhhhhhhcCCC-cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHH
Q 010080 295 G----VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS 369 (518)
Q Consensus 295 g----~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Ls 369 (518)
. .+..+...+ .+.++.++.....++|.++.... ++.+. .+..+...+.-+.+..++-+|.+++
T Consensus 1273 P~sgKll~al~~g~-~dRNesv~kafAsAmG~L~k~Ss~dq~qK-----------Lie~~l~~~l~k~es~~siscatis 1340 (1702)
T KOG0915|consen 1273 PYSGKLLRALFPGA-KDRNESVRKAFASAMGYLAKFSSPDQMQK-----------LIETLLADLLGKDESLKSISCATIS 1340 (1702)
T ss_pred cchhHHHHHHhhcc-ccccHHHHHHHHHHHHHHHhcCChHHHHH-----------HHHHHHHHHhccCCCccchhHHHHH
Confidence 1 122222222 24556667777778888875443 34443 4444444444444555588999999
Q ss_pred HhccCCHHHHHHHHhCCCHHHHHHHhcCCC-hhHH--HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHh
Q 010080 370 NIAAGSVEHKQLIHSSEALALLLHLLSTSP-FDIK--KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDL 446 (518)
Q Consensus 370 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~-~~v~--~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~l 446 (518)
||+....+..+--.+ -++|. +-+-.+.+ ...+ .+=.| ..++.+. .|. ..+....++-.+|.-
T Consensus 1341 ~Ian~s~e~Lkn~as-aILPL-iFLa~~ee~Ka~q~Lw~dvW--~e~vsgg---agt--------vrl~~~eiLn~icen 1405 (1702)
T KOG0915|consen 1341 NIANYSQEMLKNYAS-AILPL-IFLAMHEEEKANQELWNDVW--AELVSGG---AGT--------VRLYLLEILNLICEN 1405 (1702)
T ss_pred HHHHhhHHHHHhhHH-HHHHH-HHHHHhHHHHHHHHHHHHHH--HHhCCCC---cch--------hhhhHHHHHHHHHHH
Confidence 987655443332222 14444 33333322 1111 11112 2222211 111 223333455555555
Q ss_pred hccCC-HHHHHHHHHHHHHHHcc
Q 010080 447 VRSAD-IEAARLGLQFMELVLRG 468 (518)
Q Consensus 447 L~~~d-~~~~~~~l~~l~~il~~ 468 (518)
..+++ ..+...+..++..+...
T Consensus 1406 i~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1406 ITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred hccchHHHHHHHHHHHHHHHccc
Confidence 44444 56666777777666543
No 152
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=1 Score=45.18 Aligned_cols=224 Identities=13% Similarity=0.088 Sum_probs=153.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC----CC----CcHHHHHHcCCHHHHHHHhcC--CCChH---HHHHHH
Q 010080 81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRF----EF----PPIETALKAGAIPVLVQCLAF--GSPDE---QLLEAA 147 (518)
Q Consensus 81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~----~~----~~~~~~i~~g~ip~Lv~~L~~--~~~~~---~~~eA~ 147 (518)
+..+.+++..+.++|.+.-+..+.-++.+-..+ .. .-++..++.++++.|++-+.. .+..+ -+..+.
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 345667777788888888888888888854322 11 234677888999999998863 12111 124467
Q ss_pred HHHHHHhcCChHHHHHhc--CChHHHHHhhc-CCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC-----
Q 010080 148 WCLTNIAAGKQEETKALL--PALPLLIAHLG-EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML----- 219 (518)
Q Consensus 148 ~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~-~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~----- 219 (518)
..+-|+..-.++....++ |.+..|+.-+. ..+-..-...|..+|.-+-.++.+.+..+-.-.++..+++-+.
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 778888877777777766 56777776443 3234456778888999888888889999999999999988764
Q ss_pred CC----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc--hhhhHHHh
Q 010080 220 PN----KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN--VATSLLVK 293 (518)
Q Consensus 220 ~~----~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~--~~~~~~~~ 293 (518)
.+ ..++.++..-+|+.+.... ..++......++....-+++ .....+..++.+|-+...|++ +++.-+++
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~---~nr~~Fl~~EGlqLm~Lmlr-~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe 359 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAP---ANRERFLKGEGLQLMNLMLR-EKKVSRGSALKVLDHAMFGPEGTPNCNKFVE 359 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcCh---hhhhhhhccccHHHHHHHHH-HHHHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 11 2456677777777666542 23444444556654443343 355667889999999888766 67777778
Q ss_pred cCchHHHHHHHccCC
Q 010080 294 SGVLQLLVERLATSN 308 (518)
Q Consensus 294 ~g~~~~Lv~lL~~~~ 308 (518)
.+++..+..++++.+
T Consensus 360 ~lGLrtiF~~FMk~p 374 (536)
T KOG2734|consen 360 ILGLRTIFPLFMKTP 374 (536)
T ss_pred HHhHHHHHHHHhhCc
Confidence 888888877776433
No 153
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.04 E-value=0.1 Score=46.79 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=73.4
Q ss_pred hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 010080 357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 436 (518)
Q Consensus 357 ~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~ 436 (518)
++.+|..+.-+++-++...+..+.. .+|.+...|.++++.||+.|+.+|+++.... ++.-
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---------------~ik~ 60 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILED---------------MIKV 60 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---------------ceee
Confidence 4678999999999998766554432 5788999999999999999999999997631 1222
Q ss_pred cCc-hHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080 437 RGC-LSGFIDLVRSADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 437 ~g~-i~~L~~lL~~~d~~~~~~~l~~l~~il~~ 468 (518)
.|- +..+..+|.++|+++...|..++..+...
T Consensus 61 k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 61 KGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 233 37778888999999999999999998875
No 154
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=3.5 Score=46.45 Aligned_cols=200 Identities=15% Similarity=0.164 Sum_probs=112.6
Q ss_pred HHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH-HH
Q 010080 300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV-EH 378 (518)
Q Consensus 300 Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~-~~ 378 (518)
++....++.+..++..+.++|..++....... .+.. ....+...|..-+++.....++..+-+|.-|....+ ++
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~-~~~q----~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~ 732 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEG-LVEQ----RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEH 732 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhh-HHHH----HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHH
Confidence 33444345577889999999999998732211 1110 001244445555556667889999999999987655 33
Q ss_pred HHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc--CCCCCCCCCc-h-hHHHHHHHHHhc-----------------
Q 010080 379 KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC--VSPTEGEGKP-K-LIQEHLVSLVGR----------------- 437 (518)
Q Consensus 379 ~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~--~~~~~~~~~~-~-~~~~~~~~l~~~----------------- 437 (518)
.. ++.. .||-++-.++..+...++.|.-+|.+++ .....-|..| . -+.+.+. ++..
T Consensus 733 ~~-~i~k-~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~-~Isagl~gd~~~~~as~Ivai 809 (1176)
T KOG1248|consen 733 CD-LIPK-LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLS-IISAGLVGDSTRVVASDIVAI 809 (1176)
T ss_pred HH-HHHH-HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHH-HHHhhhcccHHHHHHHHHHHH
Confidence 33 3333 3444444447778888888888888777 2111111122 0 0101110 1111
Q ss_pred -----------------CchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHH
Q 010080 438 -----------------GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRN 500 (518)
Q Consensus 438 -----------------g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~ 500 (518)
+++..++..|.+..+++...|+.++..+....+..--....++ -+..+-.|.+..+-.++.
T Consensus 810 ~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~--LL~sll~ls~d~k~~~r~ 887 (1176)
T KOG1248|consen 810 THILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEE--LLPSLLALSHDHKIKVRK 887 (1176)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHH--HHHHHHHHHHhhhHHHHH
Confidence 2466666677788888888888888888765543111111111 345555555555666666
Q ss_pred HHHHHHHhh
Q 010080 501 MANGLVDKY 509 (518)
Q Consensus 501 ~a~~il~~~ 509 (518)
+...+++++
T Consensus 888 Kvr~LlekL 896 (1176)
T KOG1248|consen 888 KVRLLLEKL 896 (1176)
T ss_pred HHHHHHHHH
Confidence 666555543
No 155
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.99 E-value=0.16 Score=44.00 Aligned_cols=123 Identities=10% Similarity=0.111 Sum_probs=94.1
Q ss_pred HHHHHHcCCHHHHHHHhcCCCC-----hHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCC-CHHHHHHHHHH
Q 010080 118 IETALKAGAIPVLVQCLAFGSP-----DEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKS-SSPVAEQCAWA 190 (518)
Q Consensus 118 ~~~~i~~g~ip~Lv~~L~~~~~-----~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~-~~~v~~~a~~~ 190 (518)
..+++..|+++.|+.++..+.. ......++.++.++-.+..-.-+.+- ..|...+.+...+. +..+.+.|+..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 3678999999999999986552 23334477777777754332233222 36777777776644 68999999999
Q ss_pred HHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 010080 191 LGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP 240 (518)
Q Consensus 191 L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~ 240 (518)
|-++...++.....+.+.=-++.|+.+|+.++..++.++.-.+-.|....
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 99999988888888888888999999999999999999998888777653
No 156
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.94 E-value=0.021 Score=46.86 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=60.2
Q ss_pred hhHHHHHHHh-ccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 344 QVIAVLVKCL-KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 344 ~~l~~L~~lL-~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
.++..|+.+| .+.++.+..-||.=|+.++...|.-+..+-+.|+-..++++|.++|++||++|+.|+.-+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5889999999 4557888888999999999888877777777899999999999999999999999987664
No 157
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.81 E-value=0.097 Score=55.90 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHH
Q 010080 94 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLL 171 (518)
Q Consensus 94 ~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~L 171 (518)
+.+..++.+...|.-.++...... ..+++.+...++.+..-...+|++.+++|+++.+...++.++ -+++.+
T Consensus 516 q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~i 589 (748)
T KOG4151|consen 516 QFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKI 589 (748)
T ss_pred hchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhh
Confidence 445666666666663244433332 245667777766544333458999999999998888888876 366766
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHh-cCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH
Q 010080 172 IAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS-QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK 250 (518)
Q Consensus 172 v~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~ 250 (518)
-.++.. +++-++..++..+.|+....--+...+.+ ...++.....+..........++.++..+..... ..+..+..
T Consensus 590 e~~~~e-e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~-n~c~~~~~ 667 (748)
T KOG4151|consen 590 EELMTE-ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVE-NHCSRILE 667 (748)
T ss_pred HHHhhc-ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcch-hhhhhHHH
Confidence 666655 78999999999999999844444445555 3445555555555555555666655554443221 11221223
Q ss_pred hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHH
Q 010080 251 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE 302 (518)
Q Consensus 251 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~ 302 (518)
.......+..++.+++.+++...+....++.....+....++...+...+..
T Consensus 668 ~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 668 LLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred hhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence 4567788899999999999999888888877655555565655555554443
No 158
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.73 E-value=0.048 Score=40.62 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcC
Q 010080 144 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG 209 (518)
Q Consensus 144 ~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g 209 (518)
+.|+|++.++++... ....+. +.++.++++..+++...+|-.|.++|+-|+. ..+..+.+.+.|
T Consensus 5 KaaLWaighIgss~~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 5 KAALWAIGHIGSSPL-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHhHhcChH-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 569999999998543 333333 5999999999888889999999999999998 667777776665
No 159
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.56 E-value=0.12 Score=55.85 Aligned_cols=187 Identities=19% Similarity=0.200 Sum_probs=124.9
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHH--------HH----hcCChhHHHhhhCCCChhHHHHHHHHHHH
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV--------LL----SQGALPPLARMMLPNKGSTVRTAAWALSN 235 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~--------~~----~~g~i~~L~~ll~~~~~~~~~~a~~~L~n 235 (518)
...|+.+|+. +++-..++.++.-+..|++..+.. +. -..++|.|++.+.......+.+...+|++
T Consensus 817 a~klld~Ls~---~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSG---PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCC---ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 3345555543 456667777888787777643321 11 23578889988886667777888888888
Q ss_pred hhcCCCCCchhhHHH--hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCC---c
Q 010080 236 LIKGPDPKPATELIK--VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS---L 310 (518)
Q Consensus 236 L~~~~~~~~~~~~i~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~---~ 310 (518)
+..+ .|++ .+. ....+|.|++.|.-+|..++..+..++.-+..-...-...-+ .-++|.+..+= .+++ .
T Consensus 894 Vl~~-vP~~---vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls-~~~~n~~~ 967 (1030)
T KOG1967|consen 894 VLTN-VPKQ---VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLS-SDNDNNMM 967 (1030)
T ss_pred HHhc-CCHH---hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcC-CCCCcchh
Confidence 8753 3432 221 246788888888999999999999999887764332222222 23456666543 2333 4
Q ss_pred cchhhhhhhhhhhhcCCCc-ccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHH
Q 010080 311 QLLIPVLRSLGNLVAGDSS-TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN 370 (518)
Q Consensus 311 ~v~~~al~~L~nl~~~~~~-~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsn 370 (518)
.++..|+.+|+-+....+. ..... ...++..|.+.|.+++.-||++|..+=.+
T Consensus 968 ~VR~~ALqcL~aL~~~~P~~~l~~f-------r~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 968 VVREDALQCLNALTRRLPTKSLLSF-------RPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHHHHHhccCCCcccccc-------cHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 5788999999999874432 33322 24689999999999999999999876443
No 160
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.51 E-value=0.74 Score=48.40 Aligned_cols=123 Identities=17% Similarity=0.127 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHH
Q 010080 180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAIL 259 (518)
Q Consensus 180 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~ 259 (518)
+...+.-|+..+.....+.|...+. +|..++.|+..++..++..|+..|..+|+.. +. . ...+..+|+
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~----~--v~kvaDvL~ 102 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PE----H--VSKVADVLV 102 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HH----H--HhHHHHHHH
Confidence 4556666666666666666665544 3445666666778999999999999999763 22 3 357888999
Q ss_pred HHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc--cCCCccchhhhhhhhhh
Q 010080 260 RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA--TSNSLQLLIPVLRSLGN 322 (518)
Q Consensus 260 ~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~--~~~~~~v~~~al~~L~n 322 (518)
++|.++++.-...+=++|..|...++ .+.+..+...+. ...+..++..++..|..
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 99999998888888888877775332 223333433332 13455677777777753
No 161
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.50 E-value=0.022 Score=34.76 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.9
Q ss_pred hHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAA 373 (518)
Q Consensus 345 ~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~ 373 (518)
++|.+.+++.++++.||..|+++|++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999875
No 162
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.48 E-value=0.018 Score=35.07 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=25.7
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 387 ALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 387 ~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
++|.+++++++++++||..|+++|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999864
No 163
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.44 E-value=0.082 Score=57.19 Aligned_cols=148 Identities=13% Similarity=0.161 Sum_probs=106.9
Q ss_pred hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh--cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCc
Q 010080 252 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK--SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS 329 (518)
Q Consensus 252 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~ 329 (518)
..++|.|++.+...+......-.-+|+++..+-+. +.+.. ..++|.|++.| +.++..++..+++++.-+......
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccc
Confidence 47889999999866777788888888888875442 33322 34677888888 588989989999999988766554
Q ss_pred ccceeeccCCCchhhhHHHHHHHhccCh---hhhHHHHHHHHHHhccCCH-HHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080 330 TISDVLVPGHGITDQVIAVLVKCLKSEH---RVLKKEAAWVLSNIAAGSV-EHKQLIHSSEALALLLHLLSTSPFDIKKE 405 (518)
Q Consensus 330 ~~~~~i~~G~~~~~~~l~~L~~lL~~~~---~~i~~~a~~~Lsnl~~~~~-~~~~~li~~~~i~~Li~lL~~~~~~v~~e 405 (518)
-...-++ .++|.+..+=.+.+ ..+|..|..++.-|+..-| ..+... ...++..|+..|.+..-.||+|
T Consensus 943 L~t~~~~-------Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f-r~~Vl~al~k~LdDkKRlVR~e 1014 (1030)
T KOG1967|consen 943 LQTEHLS-------TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF-RPLVLRALIKILDDKKRLVRKE 1014 (1030)
T ss_pred cchHHHh-------HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc-cHHHHHHhhhccCcHHHHHHHH
Confidence 3333332 48888888776655 4789999999999988433 222222 2246777888888888889999
Q ss_pred HHHHH
Q 010080 406 VAYVL 410 (518)
Q Consensus 406 A~~aL 410 (518)
|+.+=
T Consensus 1015 Av~tR 1019 (1030)
T KOG1967|consen 1015 AVDTR 1019 (1030)
T ss_pred HHHHh
Confidence 98763
No 164
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.41 E-value=0.54 Score=40.78 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=91.9
Q ss_pred hhHHHhcCchHHHHHHHccCCC-----ccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC--hhhh
Q 010080 288 TSLLVKSGVLQLLVERLATSNS-----LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVL 360 (518)
Q Consensus 288 ~~~~~~~g~~~~Lv~lL~~~~~-----~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~--~~~i 360 (518)
.+.++..|++..|+.++.+... .+++..+|.++..+..+....-+ .+ ...++..++..++.. +..+
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l------~~~FI~Kia~~Vn~~~~d~~i 76 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TL------SDSFIKKIASYVNSSAMDASI 76 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hc------cHHHHHHHHHHHccccccchH
Confidence 4567788999999999864332 35667788888887765432322 22 246888888888754 4789
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080 361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 417 (518)
Q Consensus 361 ~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 417 (518)
...|.-.|-+++..++...+.+...=-++.|+..|+.++.+++..|...+.-+...+
T Consensus 77 ~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 77 LQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999887665655555555999999999999999999998888777653
No 165
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.25 E-value=0.73 Score=46.44 Aligned_cols=243 Identities=19% Similarity=0.132 Sum_probs=133.4
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
|..++.-|.+.....+|..++--|+..+. ++++|..+..+|....++..+.. ++......++-++..+...+.+ ..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~--~~ 99 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL--NM 99 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc--ch
Confidence 45555555544567899999999999998 78999999999999999998853 3333444444455444333222 22
Q ss_pred hHHHhhchHHHHHHHhcc---------CC-----------------------------------hhHHHHHHHHHHHhhc
Q 010080 247 ELIKVDGLLDAILRHLKR---------AD-----------------------------------EELTTEVAWVVVYLSA 282 (518)
Q Consensus 247 ~~i~~~~~l~~L~~lL~~---------~d-----------------------------------~~v~~~a~~~L~~L~~ 282 (518)
+.+.....+..+++++.. .+ .+-+.-+..|+..++.
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~ 179 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVR 179 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHH
Confidence 233334555555666550 00 0111223333333320
Q ss_pred --------------CCchhhhHHHhcCchHHHHHHHcc----CC------C-----ccchhhhhhhhhhhhcCCCcccce
Q 010080 283 --------------LSNVATSLLVKSGVLQLLVERLAT----SN------S-----LQLLIPVLRSLGNLVAGDSSTISD 333 (518)
Q Consensus 283 --------------~~~~~~~~~~~~g~~~~Lv~lL~~----~~------~-----~~v~~~al~~L~nl~~~~~~~~~~ 333 (518)
..+...+.+...|++..+++.+.+ .. . ......++++|-|.+..+......
T Consensus 180 ~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~ 259 (361)
T PF07814_consen 180 SLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSY 259 (361)
T ss_pred HHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHH
Confidence 001123444556788888888751 10 0 112345788888887666544333
Q ss_pred eeccCCCchhhhHHHH----HHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh-------c------
Q 010080 334 VLVPGHGITDQVIAVL----VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-------S------ 396 (518)
Q Consensus 334 ~i~~G~~~~~~~l~~L----~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL-------~------ 396 (518)
.+... .+.++.+ .......-..+...++.++-|++..+++.+..+-..++...+..+. .
T Consensus 260 l~~~~----~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~ 335 (361)
T PF07814_consen 260 LLSHR----SSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVP 335 (361)
T ss_pred HHHhc----ccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccccc
Confidence 33221 1223222 2222222345567899999999998877766655443222211111 1
Q ss_pred -CCChhHHHHHHHHHHHhcCCC
Q 010080 397 -TSPFDIKKEVAYVLGNLCVSP 417 (518)
Q Consensus 397 -~~~~~v~~eA~~aL~nl~~~~ 417 (518)
...++..--+..++.|++.+.
T Consensus 336 ~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 336 EESSFDILILALGLLINLVEHS 357 (361)
T ss_pred ccccchHHHHHHHhHHHheeeC
Confidence 123456666777777777653
No 166
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.24 E-value=1.9 Score=43.73 Aligned_cols=226 Identities=18% Similarity=0.192 Sum_probs=129.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcH--HHHHHcCCHHHHHHHhcCC-----CChHHHHH-HHHHHHHHhcCChH-HHHH
Q 010080 93 KGAMQKRVNALRELRRLLSRFEFPPI--ETALKAGAIPVLVQCLAFG-----SPDEQLLE-AAWCLTNIAAGKQE-ETKA 163 (518)
Q Consensus 93 s~~~~~~~~a~~~lr~lls~~~~~~~--~~~i~~g~ip~Lv~~L~~~-----~~~~~~~e-A~~~L~nia~~~~~-~~~~ 163 (518)
..+.++++.|+-..-|+..+.+-... ..+.++=+.|.+-++|... .++.+-.. +..+|+.+|+...- ....
T Consensus 22 ~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~ 101 (698)
T KOG2611|consen 22 GKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEE 101 (698)
T ss_pred ccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHH
Confidence 44567899999999998776643222 2377777888888888642 23333333 77788888865432 2345
Q ss_pred hcCChHHHHHhhcCCCCHH------HHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHH-HHHHHHHHHh
Q 010080 164 LLPALPLLIAHLGEKSSSP------VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV-RTAAWALSNL 236 (518)
Q Consensus 164 v~~~v~~Lv~lL~~~~~~~------v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~-~~a~~~L~nL 236 (518)
+++.||.|+..+....+++ +.+.|-.||..+++. +.-...++..|+++.+.++-.-++-..- .-+...+.-+
T Consensus 102 ~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~ 180 (698)
T KOG2611|consen 102 MVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLL 180 (698)
T ss_pred HHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 5689999999998754444 889999999999985 6777888999999999987653321111 1111111111
Q ss_pred hcC--CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh--------cCchHHHHHHHcc
Q 010080 237 IKG--PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK--------SGVLQLLVERLAT 306 (518)
Q Consensus 237 ~~~--~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--------~g~~~~Lv~lL~~ 306 (518)
..+ .-+.....+. ..+..+..=+...+....-+.|..|+.+.... ..+.+++ ...-.-++.+|.+
T Consensus 181 ~~~~~cw~e~~~~fl---ali~~va~df~~~~~a~KfElc~lL~~vl~~~--~~e~~~~pl~~~~w~~~l~~G~~~IL~~ 255 (698)
T KOG2611|consen 181 VSKLDCWSETIERFL---ALIAAVARDFAVLHNALKFELCHLLSAVLSSE--YSELLHEPLRSMNWADYLRTGVVAILQN 255 (698)
T ss_pred HHhcccCcCCHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC--hHHhccChhhhcchHHHHHHHHHHHHhc
Confidence 111 0011111111 22333333334445566777788877433211 1111110 0112234445543
Q ss_pred CCCccchhhhhhhhhhhh
Q 010080 307 SNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 307 ~~~~~v~~~al~~L~nl~ 324 (518)
.-.+.-+.||+....|+.
T Consensus 256 kv~p~qr~pAL~Laa~~~ 273 (698)
T KOG2611|consen 256 KVAPSQRLPALILAANMM 273 (698)
T ss_pred ccCchhcChHHHHHHHHH
Confidence 335556678887777765
No 167
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.22 E-value=0.78 Score=46.32 Aligned_cols=186 Identities=13% Similarity=0.133 Sum_probs=120.6
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080 82 EELKSAVAYHGKG-AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 160 (518)
Q Consensus 82 ~~l~~~l~~~~s~-~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~ 160 (518)
.-+..++..+.+. ..+.+-.|+..|.++++.+....+++.. ..++-.+++.|....+......|+.+|..++..++
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-- 362 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-- 362 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch--
Confidence 3445566655544 5667888999999999887666555444 34666777888753334455669999999997554
Q ss_pred HHHhcC----ChHHHHHhhcCCCCHHHHHHHHH-HHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHH
Q 010080 161 TKALLP----ALPLLIAHLGEKSSSPVAEQCAW-ALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN 235 (518)
Q Consensus 161 ~~~v~~----~v~~Lv~lL~~~~~~~v~~~a~~-~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n 235 (518)
..+++ +|..++..-.. ++.++...|.. |+.-++...|..+ |..+..+|...+......++.++..
T Consensus 363 -~~l~DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tk 432 (516)
T KOG2956|consen 363 -ARLFDSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTK 432 (516)
T ss_pred -HhhhchHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHH
Confidence 34443 66677776665 44555444443 4444555444332 3344555555666667777778888
Q ss_pred hhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 236 LIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 236 L~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
++..-. .... .-....+.|.+++--.+.+..|+..+..||.++..
T Consensus 433 l~e~l~-~EeL-~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 433 LFERLS-AEEL-LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHhhcC-HHHH-HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 886521 1111 11245788889988889999999999999998874
No 168
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.82 Score=49.51 Aligned_cols=179 Identities=15% Similarity=0.128 Sum_probs=113.7
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchH
Q 010080 219 LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQ 298 (518)
Q Consensus 219 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~ 298 (518)
.++.+.++..+...++.+.+...+. ..+...+++......|.++|+-+-.+|...+..||+- ....+++
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~---~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~il~ 805 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKA---TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPEDILP 805 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchh---hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchhhHH
Confidence 3455678888999999998754222 2334568899999999999999999999988888863 3445677
Q ss_pred HHHHHHccCC-C--ccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC
Q 010080 299 LLVERLATSN-S--LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS 375 (518)
Q Consensus 299 ~Lv~lL~~~~-~--~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~ 375 (518)
.+.+.-.+.. . ++.+..+-.++++++..-.+-..... .-++..++..++.++...|..++..+++++.-.
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-------~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-------AVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-------HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 7777332221 1 23333444555555433222111111 124555666667777788999999999997543
Q ss_pred HHHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCC
Q 010080 376 VEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 376 ~~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~ 416 (518)
.-+....+ +.++..++.+.+ ++++-+|+.|+-.|..+..+
T Consensus 879 a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 879 AFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred hhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 22222211 124555666654 56788999999999998774
No 169
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=3.4 Score=46.59 Aligned_cols=240 Identities=13% Similarity=0.084 Sum_probs=137.3
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc----CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-hhHHHH
Q 010080 131 VQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL----PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVL 205 (518)
Q Consensus 131 v~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~----~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~ 205 (518)
+....+.+...+|..+..+|..++... .....+. ..-..|..-+++ .....+...+.||..|-...+ +..+.+
T Consensus 659 ~~~~e~~~~~~vQkK~yrlL~~l~~~~-s~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 659 DPEFENSSSTKVQKKAYRLLEELSSSP-SGEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hHHhhccccHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334444445678889999999999762 2222221 233344444444 345566667777777765433 333332
Q ss_pred HhcCChhHHHhhhCCCChhHHHHHHHHHHHhh--cC---CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080 206 LSQGALPPLARMMLPNKGSTVRTAAWALSNLI--KG---PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL 280 (518)
Q Consensus 206 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~--~~---~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L 280 (518)
. . .||-++-+++..+...++++.-+|..++ .. ....+..+. ...+++.|...+-.+..-+....+-++..+
T Consensus 737 ~-k-~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~--lnefl~~Isagl~gd~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 737 P-K-LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAI--LNEFLSIISAGLVGDSTRVVASDIVAITHI 812 (1176)
T ss_pred H-H-HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHH--HHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 2 2 2444444446778889999999999988 21 111122222 245666665554333332222224455555
Q ss_pred hcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccc-ceeeccCCCchhhhHHHHHHHhccChhh
Q 010080 281 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI-SDVLVPGHGITDQVIAVLVKCLKSEHRV 359 (518)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~-~~~i~~G~~~~~~~l~~L~~lL~~~~~~ 359 (518)
..........-.-.+++..+.-+| .+++.+++..|+..+.-+++..++.. .... ..++|.+..++...+..
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L-~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-------~~LL~sll~ls~d~k~~ 884 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYL-ASNSREIAKAAIGFIKVLVYKFPEECLSPHL-------EELLPSLLALSHDHKIK 884 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-------HHHHHHHHHHHHhhhHH
Confidence 432222222222234445555556 57899999999999999998776532 2222 24788888877777778
Q ss_pred hHHHHHHHHHHhccC-CHHHHHHHHh
Q 010080 360 LKKEAAWVLSNIAAG-SVEHKQLIHS 384 (518)
Q Consensus 360 i~~~a~~~Lsnl~~~-~~~~~~~li~ 384 (518)
++..+-..+--++.. +.+.++.++.
T Consensus 885 ~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 885 VRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 888888888777653 4455555544
No 170
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=0.68 Score=49.36 Aligned_cols=245 Identities=14% Similarity=0.128 Sum_probs=145.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChH
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP 169 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~ 169 (518)
.+.+=+...|+--+.-+|+ .++ .+|. .++..+.-+..+|.+.+ +...+||+..|.+++.... ++..+..
T Consensus 214 qi~~~~~~LqlViVE~Irk-v~~-~~p~----~~~~~i~~i~~lL~sts-saV~fEaa~tlv~lS~~p~----alk~Aa~ 282 (948)
T KOG1058|consen 214 QIPSFNDSLQLVIVELIRK-VCL-ANPA----EKARYIRCIYNLLSSTS-SAVIFEAAGTLVTLSNDPT----ALKAAAS 282 (948)
T ss_pred hccCccHHHHHHHHHHHHH-HHh-cCHH----HhhHHHHHHHHHHhcCC-chhhhhhcceEEEccCCHH----HHHHHHH
Confidence 3344456667766777777 444 2332 23456777788888764 5677999999998886432 2223455
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 010080 170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI 249 (518)
Q Consensus 170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i 249 (518)
.++.++-..++..++--.+--|..+.. ..+ -+-.|.+--++++|.+++.++++.+.-...-|....+
T Consensus 283 ~~i~l~~kesdnnvklIvldrl~~l~~---~~~--~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN-------- 349 (948)
T KOG1058|consen 283 TYIDLLVKESDNNVKLIVLDRLSELKA---LHE--KILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN-------- 349 (948)
T ss_pred HHHHHHHhccCcchhhhhHHHHHHHhh---hhH--HHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc--------
Confidence 566665543444444444444444432 111 1223456667888999999999999888777876532
Q ss_pred HhhchHHHHHHHhc-c------CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhh
Q 010080 250 KVDGLLDAILRHLK-R------ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN 322 (518)
Q Consensus 250 ~~~~~l~~L~~lL~-~------~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~n 322 (518)
....+..|-+=+. . ++.+.+.....++++.+...++.. ..+++.|++.+. +.++.....++..+..
T Consensus 350 -vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fis-D~N~~aas~vl~FvrE 422 (948)
T KOG1058|consen 350 -VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFIS-DSNEAAASDVLMFVRE 422 (948)
T ss_pred -HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhc-cCCHHHHHHHHHHHHH
Confidence 1123333332222 1 123567788888988887665543 356789999985 5555555555666655
Q ss_pred hhcCCCcccceeeccCCCchhhhHHHHHHHhcc-ChhhhHHHHHHHHHHhccCCH
Q 010080 323 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSV 376 (518)
Q Consensus 323 l~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-~~~~i~~~a~~~Lsnl~~~~~ 376 (518)
...-.+.-. ..++..|+.-+.. ...++-+.|+|.++--+.+..
T Consensus 423 ~iek~p~Lr-----------~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 423 AIEKFPNLR-----------ASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHhCchHH-----------HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 543332211 1244444444422 345788899999998887754
No 171
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.07 E-value=0.17 Score=45.68 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCC--------CChHHHHHHHHHHHHHhcCChHHHHHhc---CChH
Q 010080 101 NALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG--------SPDEQLLEAAWCLTNIAAGKQEETKALL---PALP 169 (518)
Q Consensus 101 ~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~--------~~~~~~~eA~~~L~nia~~~~~~~~~v~---~~v~ 169 (518)
..+..|+..|...+-..++.+++.|++..|+.+|..- .....+.+++.||..|.... .....++ +++.
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~-~G~~~v~~~~~~v~ 161 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK-YGLEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH-HHHHHHHCSSSHHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH-HHHHHHHcCcHHHH
Confidence 6778888888877666788999999999999988621 22356678999999998654 4566666 5899
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhh
Q 010080 170 LLIAHLGEKSSSPVAEQCAWALGNVA 195 (518)
Q Consensus 170 ~Lv~lL~~~~~~~v~~~a~~~L~nla 195 (518)
.++..|.+ ++..++..++..|+.+|
T Consensus 162 ~i~~~L~s-~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 162 LIALSLDS-PNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 99999987 78999999999999887
No 172
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.03 E-value=0.17 Score=37.76 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCC
Q 010080 361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 361 ~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~ 416 (518)
.|.|.|+++|+++. +.-++.+.+.++++.++++.. ++...+|--|.++|+-++..
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 57899999999764 456666777899999999996 56678999999999998763
No 173
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.93 E-value=0.32 Score=52.15 Aligned_cols=219 Identities=16% Similarity=0.135 Sum_probs=143.5
Q ss_pred HHHHHHHHHHh-hhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHH-HhhcCCCCCchhhHHHhhchHHHHHH
Q 010080 183 VAEQCAWALGN-VAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS-NLIKGPDPKPATELIKVDGLLDAILR 260 (518)
Q Consensus 183 v~~~a~~~L~n-la~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~i~~~~~l~~L~~ 260 (518)
+..+.-|...- ++....+-|-..+..|+...|+++..............+|. .+.. +. .. ....++.+.+
T Consensus 477 vakt~~~~~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~-~~------~~~v~~~~~s 548 (748)
T KOG4151|consen 477 VAKTVSWAKNEYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PG-ER------SYEVVKPLDS 548 (748)
T ss_pred HHHHHHHHHHHHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CC-Cc------hhhhhhhhcc
Confidence 33333354333 33335566777889999999999988777777777777777 2221 11 11 1245555555
Q ss_pred HhccCCh-hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCC
Q 010080 261 HLKRADE-ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH 339 (518)
Q Consensus 261 lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~ 339 (518)
.++..-. .=.-+++-++.||+..+....+.++..-.++.+-.++ ...++..+..++..+.|+..++.-....+.+.
T Consensus 549 ~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~-~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~-- 625 (748)
T KOG4151|consen 549 ALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELM-TEENPALQRAALESIINLLWSPLLYERSIVEY-- 625 (748)
T ss_pred hhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHh-hcccHHHHHHHHHHHHHHHhhHHHHHHHhhcc--
Confidence 5543221 1234678888889886666667777766666666665 36778888999999999998875544444432
Q ss_pred CchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHH-HHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 340 GITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQL-IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 340 ~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~-li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
...++.....+..........++.++.-|++-...++.. .-.......++.++.+++..+|.-.+..+.|+..
T Consensus 626 ---~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 626 ---KDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred ---ccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 234555555565566667777777777676655555552 2233567889999999999999999999999543
No 174
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.93 E-value=0.43 Score=45.04 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=66.3
Q ss_pred HHHHhcCchHHHHHhhc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC--CHHHHHHHHHHHHh
Q 010080 432 VSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDK 508 (518)
Q Consensus 432 ~~l~~~g~i~~L~~lL~-~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~--~~~i~~~a~~il~~ 508 (518)
....+...+..|+++|. ...+.+...+|.+|..+|...+. +...||+++|+..+..+..+. +.+++.+..+.+--
T Consensus 127 ~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~--N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 127 KLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPE--NQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYF 204 (257)
T ss_pred HHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChH--HHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHH
Confidence 44557789999999994 46788999999999999875543 567899999999998886654 77899999988887
Q ss_pred hcCccCC
Q 010080 509 YFGEDYG 515 (518)
Q Consensus 509 ~f~~~~~ 515 (518)
|..++..
T Consensus 205 yl~~E~~ 211 (257)
T PF08045_consen 205 YLMPETP 211 (257)
T ss_pred HHcccCC
Confidence 8777654
No 175
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.79 E-value=2.2 Score=40.74 Aligned_cols=219 Identities=14% Similarity=0.100 Sum_probs=134.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC--CChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080 171 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP--NKGSTVRTAAWALSNLIKGPDPKPATEL 248 (518)
Q Consensus 171 Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 248 (518)
|=.+|.+ ++..+|..|+.+|+.+...-+ ...+...-+..|+.++.+ .+......+..++..|.+.+... .+.
T Consensus 4 Lg~~Lts-ed~~~R~ka~~~Ls~vL~~lp---~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~--~~~ 77 (262)
T PF14500_consen 4 LGEYLTS-EDPIIRAKALELLSEVLERLP---PDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS--PES 77 (262)
T ss_pred hhhhhCC-CCHHHHHHHHHHHHHHHHhCC---HhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC--hhh
Confidence 3456766 789999999999999876433 222444446777777654 35556666677777777554311 111
Q ss_pred HHhhchHHHHHHHhc--cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC
Q 010080 249 IKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 326 (518)
Q Consensus 249 i~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 326 (518)
...++..+.+-.+ .--...+..+...|..+.....+..+.+ ..+.+..+++.+....||..+..+...+..+...
T Consensus 78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 1233333333222 1123567788888888886543333222 2356777788776778888888888888877755
Q ss_pred CCcccceeeccCCCchhhhHHHHHHHhc--------cC--hh--hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080 327 DSSTISDVLVPGHGITDQVIAVLVKCLK--------SE--HR--VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL 394 (518)
Q Consensus 327 ~~~~~~~~i~~G~~~~~~~l~~L~~lL~--------~~--~~--~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l 394 (518)
-+. . ....-+...+. .+ ++ -.+..-...|.++.+.++... .-.+|.|++-
T Consensus 155 ~~~--~-----------~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleK 216 (262)
T PF14500_consen 155 FDI--S-----------EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEK 216 (262)
T ss_pred ccc--c-----------hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHH
Confidence 441 1 12333333321 11 22 234455556666655554432 2378999999
Q ss_pred hcCCChhHHHHHHHHHHHhcCC
Q 010080 395 LSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 395 L~~~~~~v~~eA~~aL~nl~~~ 416 (518)
|.++...+|..++.+|..++..
T Consensus 217 L~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 217 LDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HcCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999888763
No 176
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.66 E-value=4.3 Score=40.28 Aligned_cols=205 Identities=13% Similarity=0.098 Sum_probs=135.7
Q ss_pred HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH-----HHHhcCC-hHHHHHhhcCCCCHHHHHHHHHHHH
Q 010080 119 ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE-----TKALLPA-LPLLIAHLGEKSSSPVAEQCAWALG 192 (518)
Q Consensus 119 ~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~-----~~~v~~~-v~~Lv~lL~~~~~~~v~~~a~~~L~ 192 (518)
.++++.++++.|+..|..-+ -+....++.++.++....... .+.+..- -..+..++...+++++.-.|-..|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence 35678899999999987543 334456778888887543222 3333333 2223333333456677777777777
Q ss_pred hhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHh--hchHHHHHHHhccCChhHH
Q 010080 193 NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKV--DGLLDAILRHLKRADEELT 270 (518)
Q Consensus 193 nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~--~~~l~~L~~lL~~~d~~v~ 270 (518)
..+. .+.+...++....+-.+...++.++-++...|..++.-+... ++....+.+.. ..+......+|.+++--++
T Consensus 149 ec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 149 ECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 7776 566777888888888899999999989999999888875533 12333333321 2456677888889988899
Q ss_pred HHHHHHHHHhhcCCchhh----hHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC
Q 010080 271 TEVAWVVVYLSALSNVAT----SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS 328 (518)
Q Consensus 271 ~~a~~~L~~L~~~~~~~~----~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~ 328 (518)
..++-.|+.|.... .+. ..+-+..-+..++.+| .+.+..++..|..++--++..+.
T Consensus 227 rqslkLL~ellldr-~n~~vm~~yi~~~~nLkl~M~lL-~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 227 RQSLKLLGELLLDR-SNFNVMTRYISSPENLKLMMNLL-RDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHHSG-GGHHHHHHHTT-HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHH-SS
T ss_pred hhhHHHHHHHHHch-hHHHHHHHHHCCHHHHHHHHHHh-cCcchhhhHHHHHHHHHHHhCCC
Confidence 99999999988632 232 3444556677888888 57888899999998888877653
No 177
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.60 E-value=0.3 Score=54.44 Aligned_cols=161 Identities=24% Similarity=0.220 Sum_probs=118.3
Q ss_pred cCCHHHHHHHhcC---CCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080 124 AGAIPVLVQCLAF---GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE 200 (518)
Q Consensus 124 ~g~ip~Lv~~L~~---~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~ 200 (518)
....|.+++..+. .+.+++|..|.-+|..+..-+.+ .+-..+|.|+..|..++++.++..++-++|-++.-.|.
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~---fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE---FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4567888887753 23477888888888888754332 22247899999999779999999999999998874433
Q ss_pred hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080 201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL 280 (518)
Q Consensus 201 ~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L 280 (518)
.-+ -.-+.|.+-+..+++.++++|..+|++|.-.. ++.+.|.++-++.+|.+++++|..-|=..+..|
T Consensus 995 lie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-------miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 LIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILND-------MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-------hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 221 12334555666789999999999999998542 677889999999999999999988888788888
Q ss_pred hcCCchhhhHHHhcCchHHHHHHHc
Q 010080 281 SALSNVATSLLVKSGVLQLLVERLA 305 (518)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~Lv~lL~ 305 (518)
+...+ .+ .+++|.++..|.
T Consensus 1063 s~k~n----~i--ynlLPdil~~Ls 1081 (1251)
T KOG0414|consen 1063 SSKGN----TI--YNLLPDILSRLS 1081 (1251)
T ss_pred hhccc----ch--hhhchHHHHhhc
Confidence 76332 12 245666666663
No 178
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.57 E-value=0.83 Score=48.04 Aligned_cols=128 Identities=18% Similarity=0.188 Sum_probs=82.5
Q ss_pred CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCC
Q 010080 308 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA 387 (518)
Q Consensus 308 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~ 387 (518)
++.+...-|...|......-++.. ..++..++.|....+..||+.|...|..+|.++++++..+.+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~-----------~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD--- 99 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQ-----------EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD--- 99 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGH-----------HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH-----------HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH---
Confidence 455566667777777766554432 357888999999999999999999999999998888877655
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc---cCCHHHHHHHHHHHHH
Q 010080 388 LALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR---SADIEAARLGLQFMEL 464 (518)
Q Consensus 388 i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~---~~d~~~~~~~l~~l~~ 464 (518)
.|+++|++.++.....+-++|..+... -..+.+..|++-+. +.|..+...++.+|..
T Consensus 100 --vL~QlL~tdd~~E~~~v~~sL~~ll~~------------------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 100 --VLVQLLQTDDPVELDAVKNSLMSLLKQ------------------DPKGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp --HHHHHTT---HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred --HHHHHHhcccHHHHHHHHHHHHHHHhc------------------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 899999998877666666666655431 12234566666555 5777788888888866
Q ss_pred HHccC
Q 010080 465 VLRGM 469 (518)
Q Consensus 465 il~~~ 469 (518)
-+...
T Consensus 160 kl~~l 164 (556)
T PF05918_consen 160 KLKPL 164 (556)
T ss_dssp HGGGS
T ss_pred HHhhC
Confidence 55533
No 179
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.55 E-value=2.6 Score=42.80 Aligned_cols=194 Identities=12% Similarity=0.134 Sum_probs=117.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhCCC---hhhHHHHHhcCChhHHHhhhCCC------ChhH-HHHHHHHHHHhhcCC
Q 010080 171 LIAHLGEKSSSPVAEQCAWALGNVAGEG---EEFRNVLLSQGALPPLARMMLPN------KGST-VRTAAWALSNLIKGP 240 (518)
Q Consensus 171 Lv~lL~~~~~~~v~~~a~~~L~nla~d~---~~~r~~~~~~g~i~~L~~ll~~~------~~~~-~~~a~~~L~nL~~~~ 240 (518)
+..++.. .+.+-+-.|+......+... ...|..+.+.=+.+.+-+++... .+.+ +..+...|..+|+.+
T Consensus 16 ~~~L~~~-k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKG-KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcc-cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 4455554 56677778888888887533 24667788888899999998742 1333 455666778899765
Q ss_pred CCCchhhHHHhhchHHHHHHHhccC-Ch------hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccch
Q 010080 241 DPKPATELIKVDGLLDAILRHLKRA-DE------ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL 313 (518)
Q Consensus 241 ~~~~~~~~i~~~~~l~~L~~lL~~~-d~------~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~ 313 (518)
+-....+++ ..||.|+.++... |+ .+..++..||..++.. +...+.++..|.++.+.+.-..++...-.
T Consensus 95 ElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 95 ELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred hhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhH
Confidence 433334443 7899999998733 22 2778888888877764 66788899999999999765422222222
Q ss_pred hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC
Q 010080 314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 374 (518)
Q Consensus 314 ~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~ 374 (518)
.-++.++--...+.+......-+ -..++..+..=+...+...+.|.|..|+.+...
T Consensus 171 alal~Vlll~~~~~~cw~e~~~~-----flali~~va~df~~~~~a~KfElc~lL~~vl~~ 226 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSETIER-----FLALIAAVARDFAVLHNALKFELCHLLSAVLSS 226 (698)
T ss_pred HHHHHHHHHHHHhcccCcCCHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhC
Confidence 23343333333332211110000 001222333333344567889999999976554
No 180
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.48 Score=48.82 Aligned_cols=148 Identities=12% Similarity=0.182 Sum_probs=101.4
Q ss_pred hhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH-hccCChhHHHHHHHHHHHhhcCCchhhhHHHhc
Q 010080 216 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLVKS 294 (518)
Q Consensus 216 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 294 (518)
.++.+.++-++.+.+.++.--.-+.. ..+++..+++. +++.+++|+..|.-+|..+|..+.
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GTg---------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------- 584 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGTG---------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------- 584 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcCC---------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------
Confidence 34445566666666666543222321 23566667766 667888999999999999997433
Q ss_pred CchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC
Q 010080 295 GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 374 (518)
Q Consensus 295 g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~ 374 (518)
..+...+++|..+-+..++....-+||-.|.++..+ ..+..|-.++.....-+|..||.+++-|...
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------------VATDILEALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence 456777888877778889988888999888776533 3667777788888889999999999988653
Q ss_pred -CHHHHHHHHhCCCHHHHHHHhc
Q 010080 375 -SVEHKQLIHSSEALALLLHLLS 396 (518)
Q Consensus 375 -~~~~~~~li~~~~i~~Li~lL~ 396 (518)
+++....+ .+++..+.+++.
T Consensus 652 ~n~~Lnp~v--~~I~k~f~~vI~ 672 (926)
T COG5116 652 CNPELNPNV--KRIIKKFNRVIV 672 (926)
T ss_pred cCcccChhH--HHHHHHHHHHHh
Confidence 43322112 135556666663
No 181
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.47 E-value=1.7 Score=42.78 Aligned_cols=187 Identities=19% Similarity=0.200 Sum_probs=107.0
Q ss_pred HhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCChhHHHHHHHHHHHhhc--CCchhhhH
Q 010080 215 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEELTTEVAWVVVYLSA--LSNVATSL 290 (518)
Q Consensus 215 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~--~~~~~~~~ 290 (518)
+..+...+...+..+.-.+.++...+ +..+.+. ...+++.+.+.++.+..+-+.-++.++.-++- +.......
T Consensus 49 Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 49 IDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 33334456778888888888877653 2233332 23567778888887766555556665555543 33344555
Q ss_pred HHhcCchHHHHHHHccCC-CccchhhhhhhhhhhhcC---CCcccceeeccCCCchhhhHHHHHH--Hhcc---------
Q 010080 291 LVKSGVLQLLVERLATSN-SLQLLIPVLRSLGNLVAG---DSSTISDVLVPGHGITDQVIAVLVK--CLKS--------- 355 (518)
Q Consensus 291 ~~~~g~~~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~---~~~~~~~~i~~G~~~~~~~l~~L~~--lL~~--------- 355 (518)
+++ .+.|.|...+.... +..++..++.+||-++.. +...+...+ ..+..+.. ....
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--------~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--------ESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--------HHHHHHHHHHhcCcCCCcccccC
Confidence 554 45677777775332 334556667777766532 222222111 13332211 1111
Q ss_pred -ChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 356 -EHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 356 -~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
+++.+...|+.+-+-|... ....+....+ ..+|.|..+|.+.+.+||..|..+|.-+.
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1235666666444545443 3333444433 36999999999999999999999988774
No 182
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.54 Score=49.97 Aligned_cols=163 Identities=11% Similarity=0.073 Sum_probs=108.8
Q ss_pred HHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHH-hccCChhHHHHHHHHHHHhhcCCchhhhHHH
Q 010080 214 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRH-LKRADEELTTEVAWVVVYLSALSNVATSLLV 292 (518)
Q Consensus 214 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~ 292 (518)
+-.++.+.++-++...++++.----+.. ..+++..|++. .++.+.+|+..|.-+|+.++..++
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTg---------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp------- 587 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTG---------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP------- 587 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccC---------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh-------
Confidence 3355666677788887777653222321 13556666666 567788999999999999997554
Q ss_pred hcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhc
Q 010080 293 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 372 (518)
Q Consensus 293 ~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~ 372 (518)
..++..|.+|..+-++.|+--+..+||-.|.|+... ..+..|-.+...+..-||+.|+.+++-|.
T Consensus 588 --~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------------eAi~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 588 --EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------------EAINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred --hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------------HHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 346788888887889999999999999988887432 35666666777777789999999998876
Q ss_pred cC-CHHHHHHHHhCCCHHHHHHHhcC--CChhHHHHHHHH
Q 010080 373 AG-SVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYV 409 (518)
Q Consensus 373 ~~-~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~eA~~a 409 (518)
.. ++..+-.+ .++...+.+++.+ .|.-++--|+.+
T Consensus 653 ~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 653 IQQTEQLCPKV--NGFRKQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred HhcccccCchH--HHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 43 22211111 1345556666643 333344444443
No 183
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.43 E-value=0.91 Score=50.09 Aligned_cols=181 Identities=17% Similarity=0.154 Sum_probs=123.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH-HHHhcCCh
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE-TKALLPAL 168 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~-~~~v~~~v 168 (518)
.+-+.+-..+.+|+..+-..++... ..+ .-...|.+-.++.....+.+-.+...|+.+|..||.+.... .....+..
T Consensus 261 ~~~s~~WK~R~Eale~l~~~l~e~~-~~~-~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~ 338 (815)
T KOG1820|consen 261 EMLSKKWKDRKEALEELVAILEEAK-KEI-VKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVF 338 (815)
T ss_pred hhhccchHHHHHHHHHHHHHHhccc-ccc-ccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhc
Confidence 4457889999999999999888765 111 11125556666666666665556677999999999654433 44444789
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCc-hhh
Q 010080 169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP-ATE 247 (518)
Q Consensus 169 ~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~ 247 (518)
|.|+..+.. ....+++.++-++-.++...+ ....++.++.++.+.++.+...+...+....+..++.. ...
T Consensus 339 p~lld~lke-kk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~ 410 (815)
T KOG1820|consen 339 PSLLDRLKE-KKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE 410 (815)
T ss_pred chHHHHhhh-ccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence 999999987 577888877777766655221 12346777788888888877665444444443332222 222
Q ss_pred HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
. ..+.+|.++....+.+.+|+..+..++.-+..
T Consensus 411 t--~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 411 T--VKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred h--HHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 2 45889999999999999999999888876664
No 184
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.37 E-value=0.21 Score=43.72 Aligned_cols=145 Identities=16% Similarity=0.164 Sum_probs=100.8
Q ss_pred hHHHHHHHcc-CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC
Q 010080 297 LQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS 375 (518)
Q Consensus 297 ~~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~ 375 (518)
+..++..|.. ....+++..++-++..+.. ...+.. ..-+-..+..++......-...++.+++.+.-+.
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~~~~-------~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~ 74 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAREEF-------KEKISDFIESLLDEGEMDSLIIAFSALTALFPGP 74 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHHHHH-------HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhHHHH-------HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC
Confidence 4445555542 4566788888888877741 111111 1234455666666666667788999999999888
Q ss_pred HHHHHHHH-hCCCHHHHHHHhc--CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhcc-CC
Q 010080 376 VEHKQLIH-SSEALALLLHLLS--TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-AD 451 (518)
Q Consensus 376 ~~~~~~li-~~~~i~~Li~lL~--~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d 451 (518)
++....++ ..|+++.+..++. ..+..++..++.+|...|.+ +.++..+...+++-|-++++. +|
T Consensus 75 ~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d------------~~~r~~I~~~~~~~L~~~~~~~~~ 142 (157)
T PF11701_consen 75 PDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID------------KSCRTFISKNYVSWLKELYKNSKD 142 (157)
T ss_dssp HHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS------------HHHHHCCHHHCHHHHHHHTTTCC-
T ss_pred HHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc------------HHHHHHHHHHHHHHHHHHHccccc
Confidence 88888876 5689999999998 78889999999999998874 567777778889999999964 44
Q ss_pred HH-HHHHHHHHHH
Q 010080 452 IE-AARLGLQFME 463 (518)
Q Consensus 452 ~~-~~~~~l~~l~ 463 (518)
.. +...++=+|.
T Consensus 143 ~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 143 DSEIRVLAAVGLC 155 (157)
T ss_dssp HH-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 44 5555544443
No 185
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.35 E-value=0.88 Score=50.95 Aligned_cols=143 Identities=18% Similarity=0.193 Sum_probs=110.7
Q ss_pred chHHHHHHHhc----cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC
Q 010080 253 GLLDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS 328 (518)
Q Consensus 253 ~~l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~ 328 (518)
.+.|.++.+.+ ..||+++..|.-||+.+..-+.+.+. ..+|.|+..+..++++-++..+.-++|-++..-+
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 45677777764 56789999999999988864443333 3368888888789999999999999998876554
Q ss_pred cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHH
Q 010080 329 STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAY 408 (518)
Q Consensus 329 ~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~ 408 (518)
.. ++ -.-+.|..-|..+++.+|+.|..+|++|.-.+ .+--.|-++.+...|.+++..++.-|--
T Consensus 994 nl----ie-------~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen 994 NL----IE-------PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred cc----cc-------hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence 33 32 25678888899999999999999999997654 2334688999999999999999888887
Q ss_pred HHHHhcCC
Q 010080 409 VLGNLCVS 416 (518)
Q Consensus 409 aL~nl~~~ 416 (518)
....++..
T Consensus 1058 FF~Els~k 1065 (1251)
T KOG0414|consen 1058 FFKELSSK 1065 (1251)
T ss_pred HHHHhhhc
Confidence 76666553
No 186
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.16 E-value=1.3 Score=47.14 Aligned_cols=258 Identities=12% Similarity=0.135 Sum_probs=157.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080 83 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK 162 (518)
Q Consensus 83 ~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~ 162 (518)
++..++..++-.+.+++..=.+.|.+-+.... ..++..-++|.|+..+...+........+-.++..-...+
T Consensus 255 d~~~fLeel~lks~~eK~~Ff~~L~~~l~~~p----e~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~e---- 326 (690)
T KOG1243|consen 255 DTLLFLEELRLKSVEEKQKFFSGLIDRLDNFP----EEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEE---- 326 (690)
T ss_pred HHHHHHHhcccCcHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccc----
Confidence 34456666667777777777777766454432 4678888999999988865521111222222222222211
Q ss_pred HhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCC
Q 010080 163 ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP 242 (518)
Q Consensus 163 ~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~ 242 (518)
...+.+|.+++++.+ .+..+|-.-+.-+-+... ...+.+++.-++|-+..-+.+.+..+++..+.++..|+..-+
T Consensus 327 yq~~i~p~l~kLF~~-~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKS-PDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS- 401 (690)
T ss_pred cccchhhhHHHHhcC-cchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc-
Confidence 333689999999988 677887765554444433 455677888899999999999999999999999998884321
Q ss_pred CchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchH-HHHHHHccCCCccchhhhhhhhh
Q 010080 243 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQ-LLVERLATSNSLQLLIPVLRSLG 321 (518)
Q Consensus 243 ~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~-~Lv~lL~~~~~~~v~~~al~~L~ 321 (518)
... .....+..+.++-.+++..++.+..-||+.++.... .....+++. .....+ .++-...+..++.++.
T Consensus 402 ---~~~-Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~----~~~R~~vL~~aftral-kdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 402 ---KRN-LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA----ASVRKRVLASAFTRAL-KDPFVPARKAGVLALA 472 (690)
T ss_pred ---hhh-hcHHHHHHHHhhCccccCcccccceeeecccccccc----hhhhccccchhhhhhh-cCCCCCchhhhhHHHh
Confidence 111 234556666666556677899999888888875421 122233322 222223 2333444555554444
Q ss_pred hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHh
Q 010080 322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNI 371 (518)
Q Consensus 322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl 371 (518)
.....-+... + ...++|.+..+.-.++..+|..|--++...
T Consensus 473 at~~~~~~~~--v-------a~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 473 ATQEYFDQSE--V-------ANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hcccccchhh--h-------hhhccccccccccCcccchhhHHHHHHHHH
Confidence 3332222111 1 135778888887777777777777666544
No 187
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=4.1 Score=43.41 Aligned_cols=223 Identities=15% Similarity=0.133 Sum_probs=136.7
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH--hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhH
Q 010080 213 PLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK--VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSL 290 (518)
Q Consensus 213 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~ 290 (518)
.|-+-|+.++..++.+|+-.+.++.=-.+|....+-+. ...-...+..+|.++-+.|+..|.--++.+..-..+.+.-
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 34455567789999999999999874433433222110 1233456788899999999988877766665422222222
Q ss_pred HHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHH
Q 010080 291 LVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN 370 (518)
Q Consensus 291 ~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsn 370 (518)
-+-..++..+.+-+......+|+..+...|..+...+ +...+++ .++|.+-..|..+...||-.+.-.|+-
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le-------~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLE-------QLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHH-------HHHHhcchhhhccchhHHHHHHHHHHH
Confidence 2222344455554444556688888888888877554 2222332 466777777777788999888888887
Q ss_pred hccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchh-HHHHHHHHHhcC--chHHHHHhh
Q 010080 371 IAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKL-IQEHLVSLVGRG--CLSGFIDLV 447 (518)
Q Consensus 371 l~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~-~~~~~~~l~~~g--~i~~L~~lL 447 (518)
|-+...-+ +.+---...++-.|...+..+.+.-+..|.|.+.... +|+. .-+.+.+|++.+ +...++++|
T Consensus 329 ik~vra~~---f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~----k~ee~~c~Rc~tlv~~n~~A~~rf~~~l 401 (1005)
T KOG1949|consen 329 IKAVRAAK---FWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVN----KPEEVWCERCVTLVQMNHAAARRFYQYL 401 (1005)
T ss_pred HHhhhhhh---hhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHccCHHHHHHHHHHh
Confidence 74432111 2221124567777777777888888888888876421 2321 124567787654 566788888
Q ss_pred ccCC
Q 010080 448 RSAD 451 (518)
Q Consensus 448 ~~~d 451 (518)
..-.
T Consensus 402 ~~~~ 405 (1005)
T KOG1949|consen 402 HEHT 405 (1005)
T ss_pred cccc
Confidence 7644
No 188
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=3.9 Score=43.91 Aligned_cols=282 Identities=17% Similarity=0.115 Sum_probs=152.5
Q ss_pred cCCHHHHHHHhc-CC----C-ChHHHHH-HHHHHHHHhc--CChHHHHHhcC--ChHHHHHhhcCCCCHHHHHHHHHHHH
Q 010080 124 AGAIPVLVQCLA-FG----S-PDEQLLE-AAWCLTNIAA--GKQEETKALLP--ALPLLIAHLGEKSSSPVAEQCAWALG 192 (518)
Q Consensus 124 ~g~ip~Lv~~L~-~~----~-~~~~~~e-A~~~L~nia~--~~~~~~~~v~~--~v~~Lv~lL~~~~~~~v~~~a~~~L~ 192 (518)
.|+++.++..|. +. + ....|.| |.+.+.++.+ .......-+++ .++.++-.+.+ +.-=++.+|+..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s-~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRS-NYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcC-cccchHHHHHHHHH
Confidence 689999999994 21 1 1234445 7788888776 33333444443 56666666666 55668889999999
Q ss_pred hhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHH
Q 010080 193 NVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTE 272 (518)
Q Consensus 193 nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~ 272 (518)
.+.. ++++..+-..+......++++.+..+.-.|+-++.-+.++....+.... .+.+.++.|+.+-+.-+.++...
T Consensus 486 ~~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sa-hVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 486 TIEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSA-HVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHh-hhhHHHHHHHHhcccccchHHHH
Confidence 8844 5666666666777778888888888999999999988876421111100 01223333333333334444444
Q ss_pred HHHHH-HHhhcCCchhhhHHHh---cCchHHHHHHHccCCC-----ccchhhhhhhhhhh---hcCCCcccceeeccCCC
Q 010080 273 VAWVV-VYLSALSNVATSLLVK---SGVLQLLVERLATSNS-----LQLLIPVLRSLGNL---VAGDSSTISDVLVPGHG 340 (518)
Q Consensus 273 a~~~L-~~L~~~~~~~~~~~~~---~g~~~~Lv~lL~~~~~-----~~v~~~al~~L~nl---~~~~~~~~~~~i~~G~~ 340 (518)
+.-.+ .+.++.-......+.. ...++....++.++++ .+-...|...|..+ .-.-+. +-.++..
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen-~p~vLk~--- 637 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLEN-RPLVLKY--- 637 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhccc-chHHHHH---
Confidence 44332 2333211112222211 1122222333322211 11223343333333 222111 1111100
Q ss_pred chhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCC-hhHHHHHHHHHHHhcCC
Q 010080 341 ITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP-FDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 341 ~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~-~~v~~eA~~aL~nl~~~ 416 (518)
......|++--+|.+.....-.||+-.+-+.+-... .+..+ --|++..+.+++.+.. ...-.+++-++.|+...
T Consensus 638 le~slypvi~Filkn~i~dfy~Ea~dildg~tf~sk-eI~pi-mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfity 712 (970)
T COG5656 638 LEVSLYPVISFILKNEISDFYQEALDILDGYTFMSK-EIEPI-MWGIFELLLNLLIDEITAVYSEEVADALDNFITY 712 (970)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHH-Hhhhh-hhHHHHHHHhcccccchhhhHHHHHHHHHHHHHh
Confidence 012466777777788878888899998887765432 22222 1245666666665555 36678899999999764
No 189
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.88 E-value=0.54 Score=46.06 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=83.0
Q ss_pred hhHHHHH-HHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 010080 344 QVIAVLV-KCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG 422 (518)
Q Consensus 344 ~~l~~L~-~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~ 422 (518)
+++..|+ ..+.+.++.+|+.|..++|-++--+.+... ..++.+.+.++.++..++..|+.+|..+.... |
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~----g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTH----G 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----C
Confidence 3555443 678889999999999999988766543322 24677888887789999999999999987632 1
Q ss_pred CchhHHHHHHHH-------HhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 423 KPKLIQEHLVSL-------VGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 423 ~~~~~~~~~~~l-------~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
. +..... -...+++.|...|.+.+++++..+.+++..++-.+
T Consensus 97 ~-----~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 97 I-----DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred c-----hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 0 111111 12457888999999999999999999999998654
No 190
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.79 E-value=1.3 Score=48.55 Aligned_cols=196 Identities=20% Similarity=0.244 Sum_probs=123.1
Q ss_pred HHHhhhCCChhhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHH--HHHHHhccCC
Q 010080 190 ALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLD--AILRHLKRAD 266 (518)
Q Consensus 190 ~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~--~L~~lL~~~d 266 (518)
+|.++..++++....+++.|++..+...+.. ...++.+.+...+.|++......+.... ...+. .+-.++...+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~---~~~~~~~~f~~~~~~w~ 570 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMI---FEFIDFSVFKVLLNKWD 570 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHHHHhhcc
Confidence 6778888899999999999999999999985 4688999999999999975422222211 12222 3444454444
Q ss_pred h-hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhh
Q 010080 267 E-ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV 345 (518)
Q Consensus 267 ~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~ 345 (518)
. +.-..++..|+.+....++........-+...+++... ...+ .....+.+ .-+
T Consensus 571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~----------------~~~~---~~~~~~~~------~~f 625 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAIS----------------RWLT---SEIRVIND------RSF 625 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhh----------------ccCc---cceeehhh------hhc
Confidence 4 77788888888877644432221111222222333221 1111 11111111 012
Q ss_pred HHHHHHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC-CChhHHHHHHHHHHHh
Q 010080 346 IAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGNL 413 (518)
Q Consensus 346 l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~-~~~~v~~eA~~aL~nl 413 (518)
.|.+..++. +..+..+..|.|++.|++...++..+.+.+.|+++.+.+.-.. ...+++.++...+.+.
T Consensus 626 ~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 626 FPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred chhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 221444554 3456889999999999999988888889999999988887633 2556777776666554
No 191
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.77 E-value=2.7 Score=46.14 Aligned_cols=199 Identities=15% Similarity=0.119 Sum_probs=115.4
Q ss_pred HHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc
Q 010080 276 VVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS 355 (518)
Q Consensus 276 ~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~ 355 (518)
+|.+++...++.+..+++.|+...+...+..-...+....++..++|++..........+.. .--...+..++..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~-----~~~~~~f~~~~~~ 568 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFE-----FIDFSVFKVLLNK 568 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHH-----HHHHHHHHHHHhh
Confidence 67788888889999999999999999998755667788899999999986653222111100 0001122223332
Q ss_pred Chh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH
Q 010080 356 EHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL 434 (518)
Q Consensus 356 ~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l 434 (518)
-+. ..-..|+.+++.+...+++. ....-+..+...+........+. . ...
T Consensus 569 w~~~ersY~~~siLa~ll~~~~~~-------------------~~~~~r~~~~~~l~e~i~~~~~~---------~-~~~ 619 (699)
T KOG3665|consen 569 WDSIERSYNAASILALLLSDSEKT-------------------TECVFRNSVNELLVEAISRWLTS---------E-IRV 619 (699)
T ss_pred cchhhHHHHHHHHHHHHHhCCCcC-------------------ccccchHHHHHHHHHHhhccCcc---------c-eee
Confidence 222 44555666666665543221 01112222222222222111000 0 111
Q ss_pred HhcCchHH-HHHhhc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC-CHHHHHHHHHHHHhhc
Q 010080 435 VGRGCLSG-FIDLVR-SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE-NEDLRNMANGLVDKYF 510 (518)
Q Consensus 435 ~~~g~i~~-L~~lL~-~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~-~~~i~~~a~~il~~~f 510 (518)
.....+.+ +..++. +..+..+..|+.++.+++..-++ ++..+.+.||+..++++-.+. -.++...+..+++...
T Consensus 620 ~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 620 INDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKE--YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred hhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChh--hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 11222333 445454 35567888999999999976544 788899999999988774332 5567777777776543
No 192
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=12 Score=40.56 Aligned_cols=304 Identities=14% Similarity=0.119 Sum_probs=161.9
Q ss_pred HHHHHHHHhcCChHHHHH-hcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChh
Q 010080 146 AAWCLTNIAAGKQEETKA-LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGS 224 (518)
Q Consensus 146 A~~~L~nia~~~~~~~~~-v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~ 224 (518)
|-|.+..+++...+.... .....|.+=..|.+ ....+...|+.++.++..-.+ |.. . ..+..|-.++.++...
T Consensus 224 A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~-K~emV~~EaArai~~l~~~~~--r~l-~--pavs~Lq~flssp~~~ 297 (865)
T KOG1078|consen 224 AVCMLIRIASELLKENQQADSPLFPFLESCLRH-KSEMVIYEAARAIVSLPNTNS--REL-A--PAVSVLQLFLSSPKVA 297 (865)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHhc-hhHHHHHHHHHHHhhccccCH--hhc-c--hHHHHHHHHhcCcHHH
Confidence 555555555332222111 11244555555654 678899999999999876432 211 1 1667777788889999
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHH
Q 010080 225 TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL 304 (518)
Q Consensus 225 ~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL 304 (518)
++-.|..+|..++.. .|.. + ..+=+-|-.++.+.+..+...|.-+|. -.|....+..+... +...+.-+
T Consensus 298 lRfaAvRtLnkvAm~-~P~~----v--~~cN~elE~lItd~NrsIat~AITtLL--KTG~e~sv~rLm~q--I~~fv~di 366 (865)
T KOG1078|consen 298 LRFAAVRTLNKVAMK-HPQA----V--TVCNLDLESLITDSNRSIATLAITTLL--KTGTESSVDRLMKQ--ISSFVSDI 366 (865)
T ss_pred HHHHHHHHHHHHHHh-CCcc----c--cccchhHHhhhcccccchhHHHHHHHH--HhcchhHHHHHHHH--HHHHHHhc
Confidence 999999999999854 2331 1 122233445555555555444444332 23455555554422 23333333
Q ss_pred ccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-hhhhHHHHHHHHHHhccCCHHHHHHHH
Q 010080 305 ATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIH 383 (518)
Q Consensus 305 ~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Lsnl~~~~~~~~~~li 383 (518)
+.+..-+...|+++|++..... ..+.+..|..+|..+ ....++...-+|.-++..+++....
T Consensus 367 -sDeFKivvvdai~sLc~~fp~k--------------~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-- 429 (865)
T KOG1078|consen 367 -SDEFKIVVVDAIRSLCLKFPRK--------------HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-- 429 (865)
T ss_pred -cccceEEeHHHHHHHHhhccHH--------------HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH--
Confidence 1223334456666666654221 124677777777553 3466677777777776655444322
Q ss_pred hCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHH
Q 010080 384 SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFME 463 (518)
Q Consensus 384 ~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~ 463 (518)
++..|+..+.+.. ...-+...|.-+-... ..+|.+ ..+++++ .+.+.-.+..+...+..++.
T Consensus 430 ---~L~~LCefIEDce--~~~i~~rILhlLG~Eg---P~a~~P-skyir~i---------yNRviLEn~ivRaaAv~ala 491 (865)
T KOG1078|consen 430 ---GLEHLCEFIEDCE--FTQIAVRILHLLGKEG---PKAPNP-SKYIRFI---------YNRVILENAIVRAAAVSALA 491 (865)
T ss_pred ---HHHHHHHHHHhcc--chHHHHHHHHHHhccC---CCCCCc-chhhHHH---------hhhhhhhhhhhHHHHHHHHH
Confidence 3445555555443 2334555555553321 112211 1333333 33333344555666777777
Q ss_pred HHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080 464 LVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK 508 (518)
Q Consensus 464 ~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~ 508 (518)
++....+. ... ...-.+.+++++.+.+++++|...+..
T Consensus 492 Kfg~~~~~-l~~------sI~vllkRc~~D~DdevRdrAtf~l~~ 529 (865)
T KOG1078|consen 492 KFGAQDVV-LLP------SILVLLKRCLNDSDDEVRDRATFYLKN 529 (865)
T ss_pred HHhcCCCC-ccc------cHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 77622211 111 112356777888888888888666553
No 193
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.70 E-value=4.6 Score=38.20 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC
Q 010080 144 LEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN 221 (518)
Q Consensus 144 ~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~ 221 (518)
..|+.+|.-++--.+..+...- .++..|+.+|.....+.++..++.+|-.+..|++.+...+-+.+++..++.++++.
T Consensus 109 ~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~ 188 (257)
T PF08045_consen 109 ALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSK 188 (257)
T ss_pred HHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccc
Confidence 3477788888766665555444 48999999996556789999999999999999999999999999999999999965
Q ss_pred --ChhHHHHHHHHHHHhh
Q 010080 222 --KGSTVRTAAWALSNLI 237 (518)
Q Consensus 222 --~~~~~~~a~~~L~nL~ 237 (518)
+.+++-.++-.|.-..
T Consensus 189 ~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 189 STDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccHHHhHHHHHHHHHHH
Confidence 5667666665555443
No 194
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.57 E-value=6.8 Score=39.69 Aligned_cols=121 Identities=12% Similarity=0.255 Sum_probs=88.1
Q ss_pred hhhhhhhhhhc---CCCcccceeeccCCCchhhhHHHHHHHhccCh---hhhHHHHHHHHHHhccCCHHHHHHHHhCCCH
Q 010080 315 PVLRSLGNLVA---GDSSTISDVLVPGHGITDQVIAVLVKCLKSEH---RVLKKEAAWVLSNIAAGSVEHKQLIHSSEAL 388 (518)
Q Consensus 315 ~al~~L~nl~~---~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~---~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i 388 (518)
..++++..+.. +.+...+.+++. ..++..|..++.+.. +.+-..|+-+++.+....|.....+.++|++
T Consensus 79 ~lLk~l~~~~~~~~~~~~~lrnl~D~-----s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~ 153 (379)
T PF06025_consen 79 SLLKFLSHAMQHSGGFGDRLRNLIDS-----SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLI 153 (379)
T ss_pred HHHHHHHHHhccCCCcccccccccch-----hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCCh
Confidence 34566666655 333445556652 257778888888764 5888999999999999888888899999999
Q ss_pred HHHHHHhc-C---CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC
Q 010080 389 ALLLHLLS-T---SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD 451 (518)
Q Consensus 389 ~~Li~lL~-~---~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d 451 (518)
+.+++.+. . ++.++-...--+|+-+|-+. .=.+.+.+.+.++.|++++.+++
T Consensus 154 ~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~-----------~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 154 DAFLDAITAKGILPSSEVLTSLPNVLSAICLNN-----------RGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH-----------HHHHHHHhcChHHHHHHHhCCHH
Confidence 99999998 4 24455555556667777752 33567778899999999887754
No 195
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.52 E-value=1.9 Score=46.58 Aligned_cols=136 Identities=19% Similarity=0.195 Sum_probs=82.8
Q ss_pred chHHHHHHHhccC----ChhHHHHHHHHHHHhhcC---CchhhhHHHhcCchHHHHHHHcc---CCCccchhhhhhhhhh
Q 010080 253 GLLDAILRHLKRA----DEELTTEVAWVVVYLSAL---SNVATSLLVKSGVLQLLVERLAT---SNSLQLLIPVLRSLGN 322 (518)
Q Consensus 253 ~~l~~L~~lL~~~----d~~v~~~a~~~L~~L~~~---~~~~~~~~~~~g~~~~Lv~lL~~---~~~~~v~~~al~~L~n 322 (518)
..+..+..++.++ .+.+...++-+++.+... ..+.+...+-..+++.+...|.. ..+...+...+++|||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 4556677777643 345566666666655531 11111111123355666665542 3445556788999999
Q ss_pred hhcCCCcccceeeccCCCchhhhHHHHHHHhc-c--ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--
Q 010080 323 LVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-S--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-- 397 (518)
Q Consensus 323 l~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~--~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~-- 397 (518)
+-.. ..++.|..++. . ....+|..|+|+|..++...+.. +-+.|+.++.+
T Consensus 473 ~g~~-----------------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~ 527 (574)
T smart00638 473 AGHP-----------------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRA 527 (574)
T ss_pred cCCh-----------------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCC
Confidence 7533 25666666665 2 23589999999999997655444 34456666643
Q ss_pred CChhHHHHHHHHHHHh
Q 010080 398 SPFDIKKEVAYVLGNL 413 (518)
Q Consensus 398 ~~~~v~~eA~~aL~nl 413 (518)
.++++|..|..+|...
T Consensus 528 e~~EvRiaA~~~lm~t 543 (574)
T smart00638 528 EPPEVRMAAVLVLMET 543 (574)
T ss_pred CChHHHHHHHHHHHhc
Confidence 5678999888888664
No 196
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.50 E-value=7.2 Score=39.50 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHhhc-C-CCCCchhhHHHhhchHHHHHHHhccCC---hhHHHHHHHHHHHhhcCCchhhhHHHhcCchH
Q 010080 224 STVRTAAWALSNLIK-G-PDPKPATELIKVDGLLDAILRHLKRAD---EELTTEVAWVVVYLSALSNVATSLLVKSGVLQ 298 (518)
Q Consensus 224 ~~~~~a~~~L~nL~~-~-~~~~~~~~~i~~~~~l~~L~~lL~~~d---~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~ 298 (518)
.+.+..+.++..+.. + ......+.++.....+..|..++.+.. +.+...++-.++.+..+++.....+.+.|+.+
T Consensus 75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~ 154 (379)
T PF06025_consen 75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID 154 (379)
T ss_pred HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence 455666666666666 2 212222333321455666667776543 67888999999999988888899999999999
Q ss_pred HHHHHHc-c--CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChh--hhHH-HHHHHHHH--
Q 010080 299 LLVERLA-T--SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR--VLKK-EAAWVLSN-- 370 (518)
Q Consensus 299 ~Lv~lL~-~--~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~--~i~~-~a~~~Lsn-- 370 (518)
.+++.+. . -++.+++...-.+++.||-... ..+.+.+ .+.++.++.++.+++. .++. +.+..+++
T Consensus 155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~------~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~ 227 (379)
T PF06025_consen 155 AFLDAITAKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKS------SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSF 227 (379)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHh------cChHHHHHHHhCCHHHHHHhcccchHHHHHHHH
Confidence 9999885 1 1344455555566666665543 3334443 3588888888877653 2222 44544544
Q ss_pred --hccCCHHHHHHHHh
Q 010080 371 --IAAGSVEHKQLIHS 384 (518)
Q Consensus 371 --l~~~~~~~~~~li~ 384 (518)
|.++.|.....+++
T Consensus 228 DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 228 DELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHccCHHHHHHHHH
Confidence 44555555554444
No 197
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.40 E-value=12 Score=40.06 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=76.5
Q ss_pred hcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCch
Q 010080 207 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 286 (518)
Q Consensus 207 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~ 286 (518)
-.|.+..+++...+++..++..++-.|.-+... .... .+.+ -.+....+..-+.+..+.|+..|..||+++-..+.+
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~ei-dd~v-fn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEI-DDDV-FNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-cccc-CHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 345566677777788889999999888888752 1222 2222 246777777777788899999999999999853221
Q ss_pred hhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhh
Q 010080 287 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGN 322 (518)
Q Consensus 287 ~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~n 322 (518)
. +..+...++.++...++++|+..|+..|.+
T Consensus 160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred C-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 1 235667788888788999999988766553
No 198
>PRK14707 hypothetical protein; Provisional
Probab=93.32 E-value=25 Score=42.77 Aligned_cols=341 Identities=15% Similarity=0.079 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHh-cCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHH
Q 010080 96 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCL-AFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIA 173 (518)
Q Consensus 96 ~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L-~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~ 173 (518)
......++..|..+++.++ .....+ ....|-.++..+ +-++++.. ..|+..|...-.+.+.....+- ..|-..+.
T Consensus 178 ~~~c~~aa~~la~~~~~~d-~~~~~~-~~q~ia~~lNa~sKWp~~~~c-~~aa~~la~~l~~~~~l~~~~~~q~va~~lN 254 (2710)
T PRK14707 178 NPDCQAVAPRFAALVASDD-RLRSAM-DAQGVATVLNALCKWPDTPDC-GNAVSALAERLADESRLRNELKPQELGNALN 254 (2710)
T ss_pred CchHHHHHHHHHHHhcCCh-hhhccc-chHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHcCcHHHHHhCChHHHHHHHH
Confidence 3455566777777676654 222222 333444444444 44554544 3466666655545555555554 37778888
Q ss_pred hhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHH-hhcCCCCCchhhHHHhh
Q 010080 174 HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN-LIKGPDPKPATELIKVD 252 (518)
Q Consensus 174 lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n-L~~~~~~~~~~~~i~~~ 252 (518)
.|...++..+..+++-+|.-=..+.+..++.+-..++-..|-.|-+-++..+.+.++-.|.. |.. ++..... +...
T Consensus 255 ~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~--d~~l~~~-~~~~ 331 (2710)
T PRK14707 255 ALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD--DPELCKA-LNAR 331 (2710)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc--cHhhhhc-cchH
Confidence 88777777677776666654333456677666655554445555555677777777766654 443 2332221 1112
Q ss_pred chHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccc
Q 010080 253 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTIS 332 (518)
Q Consensus 253 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~ 332 (518)
++-..|..+-+.+|..+-..++-+|..=...+++..+.+--. .+..+++.|++=++..+...+...|..=+.++.+..+
T Consensus 332 ~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~ 410 (2710)
T PRK14707 332 GLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRK 410 (2710)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhh
Confidence 222233333346666666666555554333355555555333 3455555565555555555555555444444443333
Q ss_pred eeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh-cCCChhHHHHHHHHHH
Q 010080 333 DVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLG 411 (518)
Q Consensus 333 ~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v~~eA~~aL~ 411 (518)
. ++. .|+-..|-.+-+-++..+...+...|.--.+...+.++.+--.+ +...++.| +-+|..+..+|+..|.
T Consensus 411 ~-~~~-----Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La 483 (2710)
T PRK14707 411 G-LDP-----QGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALA 483 (2710)
T ss_pred h-cch-----hhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHH
Confidence 2 321 34545555555667777777777777766667766666554444 33344444 6688888888888776
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHH
Q 010080 412 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ 460 (518)
Q Consensus 412 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~ 460 (518)
--..+. .+..+.|--.++...|-.+-+.+|......++.
T Consensus 484 ~~l~~~----------~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~ 522 (2710)
T PRK14707 484 ARLAHE----------RRLRKALKPQEVVIALHSLSKWPDTPICAEAAS 522 (2710)
T ss_pred HHhccc----------HHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 544421 133444444556666666666777665444433
No 199
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.32 E-value=2.7 Score=38.96 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=84.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH--------HHH
Q 010080 92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE--------TKA 163 (518)
Q Consensus 92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~--------~~~ 163 (518)
++..+..++.++..+-.++..++..-+...+..++||..++.+..++ +.-+.-|+.++..|-.++..- +-.
T Consensus 135 ~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS-elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~ 213 (293)
T KOG3036|consen 135 SRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS-ELSKTVATFILQKILLDDVGLYYICQTAERFS 213 (293)
T ss_pred CCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc-HHHHHHHHHHHHHHhhccccHHHHHHhHHHHH
Confidence 45677889999999999988887666666678999999999999876 445567999999888654321 111
Q ss_pred hc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHh
Q 010080 164 LL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS 207 (518)
Q Consensus 164 v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~ 207 (518)
.+ ..+..++..|.+.++..+...+++|.-+++. ++..|..+..
T Consensus 214 av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL~~ 257 (293)
T KOG3036|consen 214 AVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAALRS 257 (293)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHHHh
Confidence 12 2455566666666789999999999999986 6777765543
No 200
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.31 E-value=0.53 Score=51.33 Aligned_cols=170 Identities=18% Similarity=0.177 Sum_probs=93.8
Q ss_pred hhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc----CChhHHHHHHHHHHHhhcC---
Q 010080 211 LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR----ADEELTTEVAWVVVYLSAL--- 283 (518)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~--- 283 (518)
+..+..++.+....-.+ +.+.|..|.... ..|.. ..+..+..++.+ .++.+...|+-+++.|...
T Consensus 397 v~~i~~~I~~~~~~~~e-a~~~l~~l~~~~-~~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTDDE-AAQLLASLPFHV-RRPTE------ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHTT-S-HHH-HHHHHHHHHHT------H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHH-HHHHHHHHHhhc-CCCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 44455566554433333 334444444332 12333 344555555543 3445666666666666531
Q ss_pred Cc------hhhhHHHhcCchHHHHHHHc---cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc
Q 010080 284 SN------VATSLLVKSGVLQLLVERLA---TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK 354 (518)
Q Consensus 284 ~~------~~~~~~~~~g~~~~Lv~lL~---~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~ 354 (518)
.. ......+...+++.+...|. ...+...+..++++|||+-.. ..++.|..++.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------------~~i~~l~~~i~ 531 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------------ESIPVLLPYIE 531 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------------GGHHHHHTTST
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------------hhhHHHHhHhh
Confidence 10 00111122345566666554 345556778899999998422 37788888886
Q ss_pred cC---hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--CChhHHHHHHHHHHHh
Q 010080 355 SE---HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGNL 413 (518)
Q Consensus 355 ~~---~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~eA~~aL~nl 413 (518)
.. ...+|..|+|++..++...+.. +.+.|..++.+ .++++|-.|..+|...
T Consensus 532 ~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 532 GKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp TSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred hccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 65 5689999999999997777654 34556777744 5678998888877663
No 201
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.18 E-value=4.4 Score=37.65 Aligned_cols=143 Identities=14% Similarity=0.086 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCC----CChHHHHHHHHHHHHHhcCC-hHHHHHhc--C
Q 010080 94 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG----SPDEQLLEAAWCLTNIAAGK-QEETKALL--P 166 (518)
Q Consensus 94 ~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~----~~~~~~~eA~~~L~nia~~~-~~~~~~v~--~ 166 (518)
........|+.-|.-+.|+.+.. ..++++.+--.|-.||... ..+.+...++.+++.+...+ .+....+. +
T Consensus 91 ~qsnRVcnaL~LlQcvASHpdTr--~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~Te 168 (293)
T KOG3036|consen 91 AQSNRVCNALALLQCVASHPDTR--RAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTE 168 (293)
T ss_pred cccchHHHHHHHHHHHhcCcchH--HHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 34556677888887777765433 5688887766777777632 22344456888999888544 44444444 7
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH-------hcCChhHHH-hhhCCCChhHHHHHHHHHHHhhc
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL-------SQGALPPLA-RMMLPNKGSTVRTAAWALSNLIK 238 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~-------~~g~i~~L~-~ll~~~~~~~~~~a~~~L~nL~~ 238 (518)
.||..++.+.. ++..-+..|.+++..|-.|+.-.--... -.-.+..++ ++.+.++..+..++..+..+|+.
T Consensus 169 IVPlCLrime~-GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 169 IVPLCLRIMES-GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred hHHHHHHHHhc-ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 99999999988 6778889999999999887642211111 111223333 34445688999999999999985
Q ss_pred C
Q 010080 239 G 239 (518)
Q Consensus 239 ~ 239 (518)
+
T Consensus 248 n 248 (293)
T KOG3036|consen 248 N 248 (293)
T ss_pred C
Confidence 4
No 202
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.99 E-value=6.4 Score=43.64 Aligned_cols=210 Identities=18% Similarity=0.149 Sum_probs=117.8
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-----ChhHHHHHHHHHHHhhcCCC
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-----KGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nL~~~~~ 241 (518)
+...+|.-|.+....+.-..-.+.++++ +.++|++..|+.++.+- ...+.......|...|.-
T Consensus 85 AtE~~v~~l~~~~~~~~d~e~~~~~~~v----------~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-- 152 (802)
T PF13764_consen 85 ATEEFVESLEDDSEEEEDPEQEFKIASV----------LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-- 152 (802)
T ss_pred cchhhHhhccCccccccCHHHHHHHHHH----------hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh--
Confidence 7778888776632222222222333333 33578999999998742 356777777777777754
Q ss_pred CCchhhHHHhhchHHHHHHHhc----cCC----hhHHHHHHHHHHHhhcCCc-hhhh---HHHh--------cCchHHHH
Q 010080 242 PKPATELIKVDGLLDAILRHLK----RAD----EELTTEVAWVVVYLSALSN-VATS---LLVK--------SGVLQLLV 301 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~----~~d----~~v~~~a~~~L~~L~~~~~-~~~~---~~~~--------~g~~~~Lv 301 (518)
+.++..+...++++.|++.+. .+. .++....+-.+..|..... .... .... ..-+..++
T Consensus 153 -~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL 231 (802)
T PF13764_consen 153 -KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLL 231 (802)
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHH
Confidence 345555556899999988775 333 4555555555555443111 1110 0001 11244455
Q ss_pred HHHcc---CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc-----ChhhhHHH-HHHHHHHhc
Q 010080 302 ERLAT---SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-----EHRVLKKE-AAWVLSNIA 372 (518)
Q Consensus 302 ~lL~~---~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-----~~~~i~~~-a~~~Lsnl~ 372 (518)
+.+.+ ..++.+....+|+|.+++.|+++..+.+++. +-|++ .+=.. .+..+.-+ -|.+..+|-
T Consensus 232 ~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-------F~p~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~ 303 (802)
T PF13764_consen 232 ERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-------FKPYL-DFDKFDEEHSPDEQFKLECFCEIAEGIP 303 (802)
T ss_pred HHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-------HHHhc-ChhhcccccCchHHHHHHHHHHHHhcCC
Confidence 55531 1356677889999999999998776655541 22222 22111 11122222 222233332
Q ss_pred cC--CHHHHHHHHhCCCHHHHHHHhcC
Q 010080 373 AG--SVEHKQLIHSSEALALLLHLLST 397 (518)
Q Consensus 373 ~~--~~~~~~~li~~~~i~~Li~lL~~ 397 (518)
.. +....+.+++.|++...++.|..
T Consensus 304 ~~~~G~~LK~~Il~~GIv~~a~~YL~~ 330 (802)
T PF13764_consen 304 NNSNGNRLKDKILESGIVQDAIDYLLK 330 (802)
T ss_pred CCCchHHHHHHHHHhhHHHHHHHHHHH
Confidence 22 23567778999999999988854
No 203
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=16 Score=39.53 Aligned_cols=301 Identities=13% Similarity=0.078 Sum_probs=165.8
Q ss_pred HHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCC-------CCHHHHHHHHHHHHhhhC--CChhhHHHHHhcCChhHHH
Q 010080 145 EAAWCLTNIAAGKQEETKALLPALPLLIAHLGEK-------SSSPVAEQCAWALGNVAG--EGEEFRNVLLSQGALPPLA 215 (518)
Q Consensus 145 eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~-------~~~~v~~~a~~~L~nla~--d~~~~r~~~~~~g~i~~L~ 215 (518)
.|+.++.-+.+... .....|.++.++..|..+ .++.-.+.|++.+++|.. +-+..-.-+++.-+++-++
T Consensus 389 aal~fl~~~~sKrk--e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRK--EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccc--hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Confidence 45556655554432 233458899999988431 234556788888888764 2222233445555566666
Q ss_pred hhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcC
Q 010080 216 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSG 295 (518)
Q Consensus 216 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g 295 (518)
..++++.--++.-+|..++.+...- +. ......+.+...+++++.+-.++..|+-|+..+..+. .....+...
T Consensus 467 P~f~s~ygfL~Srace~is~~eeDf-kd----~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sah 539 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIEEDF-KD----NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAH 539 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHHHhc-cc----chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhh
Confidence 6777777778888999998885432 11 1113467777788888888889999999999888643 233333333
Q ss_pred chHHHHHHHccCC--CccchhhhhhhhhhhhcCCCcccceee-cc-CCCchhhhHHHHHHHhccC-h-----hhhHHHHH
Q 010080 296 VLQLLVERLATSN--SLQLLIPVLRSLGNLVAGDSSTISDVL-VP-GHGITDQVIAVLVKCLKSE-H-----RVLKKEAA 365 (518)
Q Consensus 296 ~~~~Lv~lL~~~~--~~~v~~~al~~L~nl~~~~~~~~~~~i-~~-G~~~~~~~l~~L~~lL~~~-~-----~~i~~~a~ 365 (518)
+.+.+-++|.-++ +.+++.. ++-.++..-.++..... +. | ..-..++..-..++..+ + ..=+..|.
T Consensus 540 Vp~tmekLLsLSn~feiD~LS~---vMe~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaas 615 (970)
T COG5656 540 VPETMEKLLSLSNTFEIDPLSM---VMESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAAS 615 (970)
T ss_pred hhHHHHHHHHhcccccchHHHH---HHHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHH
Confidence 3333333442122 2222222 23333322222211110 00 0 00011222333333322 1 12234455
Q ss_pred HHHHHhcc------CCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc
Q 010080 366 WVLSNIAA------GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 439 (518)
Q Consensus 366 ~~Lsnl~~------~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~ 439 (518)
..|+.+.+ ..+...+.+ .....|.+--+|++.-.+.-.||+-.|-+.+... ++ +. =+.=|+
T Consensus 616 GiL~T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~tf~s----------ke-I~-pimwgi 682 (970)
T COG5656 616 GILRTIESMILSLENRPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYTFMS----------KE-IE-PIMWGI 682 (970)
T ss_pred HHHHHHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH----------HH-hh-hhhhHH
Confidence 55555443 123333333 3457888888889998999999999988775421 00 11 112255
Q ss_pred hHHHHHhhccCCH-HHHHHHHHHHHHHHccCCC
Q 010080 440 LSGFIDLVRSADI-EAARLGLQFMELVLRGMPN 471 (518)
Q Consensus 440 i~~L~~lL~~~d~-~~~~~~l~~l~~il~~~~~ 471 (518)
...+.+++...++ .....+..++.|++..+.+
T Consensus 683 ~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ 715 (970)
T COG5656 683 FELLLNLLIDEITAVYSEEVADALDNFITYGKT 715 (970)
T ss_pred HHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence 6666666666664 5566777889999987644
No 204
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.91 E-value=2.9 Score=42.38 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=104.8
Q ss_pred HHHHHH-HHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhc--CChhHHHhhh
Q 010080 143 LLEAAW-CLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ--GALPPLARMM 218 (518)
Q Consensus 143 ~~eA~~-~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~--g~i~~L~~ll 218 (518)
+.+|.. ...-++.++...-...+ ..+..++..|..+.+..++..|+..|+.++...+ ..+.+. -+|..++..-
T Consensus 304 ~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~---~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 304 RKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP---ARLFDSTEIAICKVLEAA 380 (516)
T ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch---HhhhchHHHHHHHHHHHH
Confidence 345766 44445566655656555 3777888888876788899999999999987432 122221 1233444444
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHH--hcCc
Q 010080 219 LPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLV--KSGV 296 (518)
Q Consensus 219 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~--~~g~ 296 (518)
...+.++.+.|.-+...+.....|. ..+..+..++...|......++..+..++..-+ .+.+. -..+
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~---------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~--~EeL~~ll~di 449 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPL---------QCIVNISPLILTADEPRAVAVIKMLTKLFERLS--AEELLNLLPDI 449 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCch---------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcC--HHHHHHhhhhh
Confidence 4556666666655544433332232 233445555556787777777778888876322 22221 2467
Q ss_pred hHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080 297 LQLLVERLATSNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 297 ~~~Lv~lL~~~~~~~v~~~al~~L~nl~ 324 (518)
.|.+++.. ++.+..|+..|..||..++
T Consensus 450 aP~~iqay-~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 450 APCVIQAY-DSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhHHHHHh-cCchHHhhhhHHHhHHHHH
Confidence 88888877 5778889999999988876
No 205
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.64 E-value=3.3 Score=39.06 Aligned_cols=142 Identities=19% Similarity=0.158 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHH
Q 010080 183 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-----KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA 257 (518)
Q Consensus 183 v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~ 257 (518)
-...|+-.|-.+|. .++.|..+++..+.-.|..+|+.. -..++-.....++.|...+++ ....++...+++|.
T Consensus 66 RVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~-evi~fLl~tEiipl 143 (262)
T PF04078_consen 66 RVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDP-EVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--H-HHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcH-HHHHHHHhhchHHH
Confidence 34566667777887 789999999999887788888743 256777888888999976543 33445667899999
Q ss_pred HHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh--------cCchHHHHHHHccCCCccchhhhhhhhhhhhcCC
Q 010080 258 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK--------SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD 327 (518)
Q Consensus 258 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--------~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~ 327 (518)
.++.+..+++--..-|...+..+.. ++...+.+.. ..++..++..+...+++.+...+++|--.++...
T Consensus 144 cLr~me~GselSKtvAtfIlqKIL~-dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 144 CLRIMEFGSELSKTVATFILQKILL-DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHH-SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHc-chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 9999999887777777777665554 2223332221 2456667766666777778888888888887554
No 206
>PRK14707 hypothetical protein; Provisional
Probab=92.56 E-value=31 Score=41.97 Aligned_cols=384 Identities=16% Similarity=0.102 Sum_probs=206.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhc-CCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHH
Q 010080 93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA-FGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPL 170 (518)
Q Consensus 93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~-~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~ 170 (518)
..+.....+|+..+-..+..+. .++... ..--+..|+..++ ..++...+.-+....+.++++. ..+..+- .+|..
T Consensus 133 ~~~~~~c~~a~a~i~~~~~~~~-~~~~~l-~~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d-~~~~~~~~q~ia~ 209 (2710)
T PRK14707 133 NLDSGRCERAVARLARHLRRED-KARQTL-NAQNISLALNAFSKWSDNPDCQAVAPRFAALVASDD-RLRSAMDAQGVAT 209 (2710)
T ss_pred CCCchHHHHHHHHHHHHhcccc-chhhhh-ccccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCh-hhhcccchHHHHH
Confidence 3455566777777776665543 222212 2334555666665 3333444444555555666544 3444444 37888
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHH-HhhcCCCCCchhhHH
Q 010080 171 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS-NLIKGPDPKPATELI 249 (518)
Q Consensus 171 Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~i 249 (518)
++.-++..++..-.++++..|.-...+....+..+-..|+-..|-.+-+=++....++++.++. .+.+. +.- +..+
T Consensus 210 ~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~--~~l-~~al 286 (2710)
T PRK14707 210 VLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDD--PGL-RKAL 286 (2710)
T ss_pred HHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh--HHH-HHhc
Confidence 8888877666556666666665544334566666666665555555555556555555555554 45533 222 1122
Q ss_pred HhhchHHHHHHHhccCChhHHHHHHHHHH-HhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC
Q 010080 250 KVDGLLDAILRHLKRADEELTTEVAWVVV-YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS 328 (518)
Q Consensus 250 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~-~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~ 328 (518)
.....-..|..+-+..|..+-..+.-.|. .|.+ +.+..+.+ +.-.+..+++.|++=++..+...+...|..=+..++
T Consensus 287 ~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~ 364 (2710)
T PRK14707 287 DPINVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADP 364 (2710)
T ss_pred CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCH
Confidence 11222233333444677777666666554 4444 44444444 333455556666555555555555555554444444
Q ss_pred cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh-cCCChhHHHHHH
Q 010080 329 STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVA 407 (518)
Q Consensus 329 ~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v~~eA~ 407 (518)
...+.+ +. .|+-..|-.+-+-++......|+..|.-=..+.++..+.+--.| +..+++.| +-++..+...|+
T Consensus 365 ~l~~~l-~~-----q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKWPd~~~C~~aa 437 (2710)
T PRK14707 365 ELRKDL-EP-----QGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKWPDLPICGQAV 437 (2710)
T ss_pred hhhccc-ch-----hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcCCcchhHHHHH
Confidence 444332 21 23333444444556666666666666555456666666554444 45555555 668989999888
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHH
Q 010080 408 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM 487 (518)
Q Consensus 408 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l 487 (518)
.+|.--..+. .+-++.|--.++...|-.+-+.+|..+...+.+.|..=+-.... -++.+.-.+....|
T Consensus 438 ~~lA~~la~d----------~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~--l~~a~~~q~~~~~L 505 (2710)
T PRK14707 438 SALAGRLAHD----------TELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERR--LRKALKPQEVVIAL 505 (2710)
T ss_pred HHHHHHHhcc----------HHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH--HHhhcCHHHHHHHH
Confidence 8886655532 13334444445666666666788988887776666544432111 12222222333455
Q ss_pred HHHhcCCCHHHHHHHH
Q 010080 488 ERFQFHENEDLRNMAN 503 (518)
Q Consensus 488 ~~L~~~~~~~i~~~a~ 503 (518)
..|...++...+..|.
T Consensus 506 ~aLSK~Pd~~~c~~A~ 521 (2710)
T PRK14707 506 HSLSKWPDTPICAEAA 521 (2710)
T ss_pred HHhhcCCCcHHHHHHH
Confidence 6666667666665553
No 207
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=0.67 Score=47.82 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=79.3
Q ss_pred CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHH
Q 010080 125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV 204 (518)
Q Consensus 125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~ 204 (518)
|+|..|+++--++.++++.+.|.-+|+-+|..++ +.++..+.+|..+.|..|+...+.+||--|...-..
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--- 620 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--- 620 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc-------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH---
Confidence 4455555543344445565666677776666544 256667777777678888888888888766532111
Q ss_pred HHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh
Q 010080 205 LLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE 267 (518)
Q Consensus 205 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~ 267 (518)
-++..|-.++..++.-+++.|+-+++.+.-..+|+.... ..+++..+.+++....+
T Consensus 621 ----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~---v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 621 ----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN---VKRIIKKFNRVIVDKHE 676 (926)
T ss_pred ----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh---HHHHHHHHHHHHhhhhH
Confidence 134555666677777778888888887665555554443 35777778877764433
No 208
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.06 E-value=0.55 Score=41.13 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=91.2
Q ss_pred hHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 168 LPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 168 v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
+..++..|.. ...++++.++.-++..+- +..++...+ -+-..+-.++...+.+-...+..++..+.-+. |..+.
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHHH
Confidence 4456666553 356789999999998884 233333221 12233334454444556677777888876553 44455
Q ss_pred hHHHhhchHHHHHHHhc--cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCcc-chhhhhhhhh
Q 010080 247 ELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQ-LLIPVLRSLG 321 (518)
Q Consensus 247 ~~i~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~-v~~~al~~L~ 321 (518)
.++...|+++.+..++. ..+..+...++-+|..=|. +......+ ....++.|-+.+..+++.. ++..|+-+|.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 56667899999999999 7788888888888876553 33344444 4455788888774344444 5665555544
No 209
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=91.91 E-value=3 Score=39.33 Aligned_cols=137 Identities=17% Similarity=0.201 Sum_probs=89.8
Q ss_pred HHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCC----ccchhhhhhhhhhhhcCCCccc-ceeeccCCCchhhhH
Q 010080 272 EVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS----LQLLIPVLRSLGNLVAGDSSTI-SDVLVPGHGITDQVI 346 (518)
Q Consensus 272 ~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~----~~v~~~al~~L~nl~~~~~~~~-~~~i~~G~~~~~~~l 346 (518)
+++..|..++. +++....++++.+.-.|..+|..... +.++...+.++|.++..++... ..+++ ..++
T Consensus 69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~------tEii 141 (262)
T PF04078_consen 69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ------TEII 141 (262)
T ss_dssp HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC------TTHH
T ss_pred HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh------hchH
Confidence 34444445665 66677788888888788888853221 2356788999999997665443 34443 4799
Q ss_pred HHHHHHhccChhhhHHHHHHHHHHhccCC---------HHHHHHHHhCCCHHHHHHHh-cCCChhHHHHHHHHHHHhcCC
Q 010080 347 AVLVKCLKSEHRVLKKEAAWVLSNIAAGS---------VEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 347 ~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~---------~~~~~~li~~~~i~~Li~lL-~~~~~~v~~eA~~aL~nl~~~ 416 (518)
|..+..|..++.--|.-|.+++..|.... .+...++.. ++..++..| ..+++.+-|....+-..++.+
T Consensus 142 plcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 142 PLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 99999999998888888999998887543 233333332 444544444 677889999999999999876
Q ss_pred C
Q 010080 417 P 417 (518)
Q Consensus 417 ~ 417 (518)
+
T Consensus 220 p 220 (262)
T PF04078_consen 220 P 220 (262)
T ss_dssp T
T ss_pred H
Confidence 4
No 210
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=91.77 E-value=12 Score=36.11 Aligned_cols=209 Identities=15% Similarity=0.226 Sum_probs=137.4
Q ss_pred HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCC--CchhhHHH-hhchHHHHHHHhccC-ChhHHHHHHHHHH
Q 010080 203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP--KPATELIK-VDGLLDAILRHLKRA-DEELTTEVAWVVV 278 (518)
Q Consensus 203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~i~-~~~~l~~L~~lL~~~-d~~v~~~a~~~L~ 278 (518)
..+...|.++.|+..+..-+-+-+..++....|+-+.... .+..+.+. ....++.|+.- .. .+++...+-..|.
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHH
Confidence 4566788899999988877777888888888888764321 12222221 22344444443 23 2555555555555
Q ss_pred HhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChh
Q 010080 279 YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR 358 (518)
Q Consensus 279 ~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~ 358 (518)
.... .+.-.+.+..+.-+.....+. ..+.-++...|..+...+.+........++... .+.-+..+.-.++.+++.
T Consensus 151 Ecir-he~LakiiL~s~~~~~FF~~v-q~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n--~d~ff~e~~~~Ll~s~Ny 226 (342)
T KOG1566|consen 151 ECIR-HEFLAKIILESTNFEKFFLYV-QLPNFDIASDAFSTFKELLTRHKSVVAEFLIRN--YDNFFAEVYEKLLRSENY 226 (342)
T ss_pred HHHh-hHHHHHHHHcchhHHHHHHHH-hccchHHHHHHHHHHHHHHHHhHHHHHHHHHhC--hhhhHHHHHHHHhcccce
Confidence 4444 344556666777777777766 467778888888888888876654443333211 001123446778889999
Q ss_pred hhHHHHHHHHHHhccCC--HH-HHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080 359 VLKKEAAWVLSNIAAGS--VE-HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 417 (518)
Q Consensus 359 ~i~~~a~~~Lsnl~~~~--~~-~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 417 (518)
-+++.+..+++.+.-+. .. ..+++.+..-+..++.+|+.....+|-||-.+..-...++
T Consensus 227 vtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 227 VTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred ehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99999999999987653 22 2334444467899999999999999999999988888765
No 211
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=91.61 E-value=1.6 Score=39.14 Aligned_cols=145 Identities=18% Similarity=0.148 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhcCCCCCchhh----HH-----HhhchH-HHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhc
Q 010080 225 TVRTAAWALSNLIKGPDPKPATE----LI-----KVDGLL-DAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS 294 (518)
Q Consensus 225 ~~~~a~~~L~nL~~~~~~~~~~~----~i-----~~~~~l-~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 294 (518)
++..|..+|..+++..+++...- ++ ...+.- +.+.-++.++++.++..|+.+|..|.++...+....-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 45667777777776533331110 00 011222 233445567888999999999999998875555444321
Q ss_pred C-------------------chHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc
Q 010080 295 G-------------------VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS 355 (518)
Q Consensus 295 g-------------------~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~ 355 (518)
. +-..|+..|....+..+....++++..++...+...-. .| +-..++..+..++.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~--ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PG--LLTEVVTQVRPLLRH 156 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---Hh--HHHHHHHHHHHHHhc
Confidence 1 11345555555667788899999999999888754321 11 112355566677788
Q ss_pred ChhhhHHHHHHHHHHhccC
Q 010080 356 EHRVLKKEAAWVLSNIAAG 374 (518)
Q Consensus 356 ~~~~i~~~a~~~Lsnl~~~ 374 (518)
.++.++..+..+++-+.+-
T Consensus 157 ~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 157 RDPNVRVAALSCLGALLSV 175 (182)
T ss_pred CCCcHHHHHHHHHHHHHcC
Confidence 9999999999999888764
No 212
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=91.58 E-value=0.86 Score=41.25 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=77.1
Q ss_pred ChhHHHHHHHHHHHhhcCCchhhhHHHh----------------cCchHHHHHHHcc-----CCCccchhhhhhhhhhhh
Q 010080 266 DEELTTEVAWVVVYLSALSNVATSLLVK----------------SGVLQLLVERLAT-----SNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 266 d~~v~~~a~~~L~~L~~~~~~~~~~~~~----------------~g~~~~Lv~lL~~-----~~~~~v~~~al~~L~nl~ 324 (518)
+......+|-.|+||+..+ ..+..+++ ...+..|++.+.. .+...-......++.|++
T Consensus 8 ~~~~adl~~MLLsNlT~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSD-SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CcchHHHHHHHHHHhccch-HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3345556677777777632 23332222 2356777877754 122333456777888887
Q ss_pred cCCCcccceeeccCCCchhhh--HHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHh---CCCHHHHHHHhcC
Q 010080 325 AGDSSTISDVLVPGHGITDQV--IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHS---SEALALLLHLLST 397 (518)
Q Consensus 325 ~~~~~~~~~~i~~G~~~~~~~--l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~---~~~i~~Li~lL~~ 397 (518)
.... ..+.+++. +.+. +..|+.++.+.+..-|..++.+|-|+|.....+ ..++. .+++|.|+--|..
T Consensus 87 ~~~~-gR~~~l~~----~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 87 QLPE-GRQFFLDP----QRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred CCHH-HHHHHhCc----hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccC
Confidence 6542 23334432 2234 788888888887777788999999999876555 44443 3677777766653
No 213
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.53 E-value=3 Score=45.39 Aligned_cols=215 Identities=11% Similarity=0.124 Sum_probs=129.2
Q ss_pred CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH
Q 010080 179 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 258 (518)
Q Consensus 179 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L 258 (518)
+-..++-.++..|..+...- +....+...+++...+..+.+.++-+.-+|...+..||.-- ...++|-+
T Consensus 739 ~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy----------~e~il~dL 807 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY----------PEDILPDL 807 (982)
T ss_pred CcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc----------chhhHHHH
Confidence 44567888888999888733 55566778889999999999999999999999999999541 23566766
Q ss_pred HHH-hccCC---hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccccee
Q 010080 259 LRH-LKRAD---EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 334 (518)
Q Consensus 259 ~~l-L~~~d---~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~ 334 (518)
... .+..+ .+.+.-+=-++.++...-.+...--.+ -++...+..+ .+++...+..++..+|+++.-...+...+
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gv-repd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGV-REPDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhc-CCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 663 32211 121112223333333211111111111 2233334433 35566678899999999996654433322
Q ss_pred eccCCCchhhhHHHHHHHhcc-ChhhhHHHHHHHHHHhccCCHHHHHHHHh---CCCHHHHHHHhc-CCChhHHHHHHHH
Q 010080 335 LVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHS---SEALALLLHLLS-TSPFDIKKEVAYV 409 (518)
Q Consensus 335 i~~G~~~~~~~l~~L~~lL~~-~~~~i~~~a~~~Lsnl~~~~~~~~~~li~---~~~i~~Li~lL~-~~~~~v~~eA~~a 409 (518)
+ +.++..++.+... +.+-+|+.|...+..+-.|.....-.+.. .+....+..+.. +.+..++..|+.+
T Consensus 886 ~-------~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~ 958 (982)
T KOG4653|consen 886 F-------HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC 958 (982)
T ss_pred H-------HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 2 2455556666554 45689999999999998876443333321 123444444443 3455577777777
Q ss_pred HHHh
Q 010080 410 LGNL 413 (518)
Q Consensus 410 L~nl 413 (518)
+-.+
T Consensus 959 leei 962 (982)
T KOG4653|consen 959 LEEI 962 (982)
T ss_pred HHHH
Confidence 6554
No 214
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=91.52 E-value=1.5 Score=39.62 Aligned_cols=72 Identities=19% Similarity=0.155 Sum_probs=51.6
Q ss_pred hhHHHHHHHhcc------ChhhhHHHHHHHHHHhccCCHHHHHHHHhC--CC--HHHHHHHhcCCChhHHHHHHHHHHHh
Q 010080 344 QVIAVLVKCLKS------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSS--EA--LALLLHLLSTSPFDIKKEVAYVLGNL 413 (518)
Q Consensus 344 ~~l~~L~~lL~~------~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~--~~--i~~Li~lL~~~~~~v~~eA~~aL~nl 413 (518)
..+..|+.++.. ....-....+.+++|++.. ++.++.+++. +. +..|+-.+++.+..-|.-++.+|.|+
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence 567777777754 2234456688999999864 5777788764 33 66777777878655566788999999
Q ss_pred cCC
Q 010080 414 CVS 416 (518)
Q Consensus 414 ~~~ 416 (518)
|..
T Consensus 131 cFd 133 (192)
T PF04063_consen 131 CFD 133 (192)
T ss_pred hcc
Confidence 985
No 215
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=91.36 E-value=3.1 Score=36.48 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=84.5
Q ss_pred CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHH
Q 010080 125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV 204 (518)
Q Consensus 125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~ 204 (518)
.+++.|+++|+.+.+....+|++++|+.|..-++-.-+.+.+..+.-. ...++...........+. ...++++
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-~~~~ee~--- 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDESTDISLPMMGI-SPSSEEY--- 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccchhhHHhhccC-CCchHHH---
Confidence 357888899987776788899999999998877755544433222100 001122222322222222 1112233
Q ss_pred HHhcCChhHHHhhhCCCC-hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhh
Q 010080 205 LLSQGALPPLARMMLPNK-GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 281 (518)
Q Consensus 205 ~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 281 (518)
....++..|++.++.+. ..-...++-++.++....+.+ +... -..++|.+++.++..++..+....+-|+.|.
T Consensus 83 -y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~-cv~~--L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 -YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLK-CVPY--LPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred -HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcC-chhH--HHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 23335778888887553 222334555555555332222 3334 3588999999999777788888777777665
No 216
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.11 E-value=2.8 Score=41.06 Aligned_cols=170 Identities=18% Similarity=0.112 Sum_probs=114.4
Q ss_pred ChhHHH-hhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC-Cchh
Q 010080 210 ALPPLA-RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVA 287 (518)
Q Consensus 210 ~i~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~ 287 (518)
.+..|+ ..+++++..+++.++.||+-.|--+. +. ....++.+.+.+..++++++..++.++..+..- ....
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-----~~--a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-----EL--AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-----HH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 343443 56678889999999999998886531 12 246788888888878899999999999887752 2222
Q ss_pred hhHHH-------hcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc----C
Q 010080 288 TSLLV-------KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS----E 356 (518)
Q Consensus 288 ~~~~~-------~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~----~ 356 (518)
.+... ...+++.+...|. +.+++++..++..++.+.-...-.. ...++..|+-+.-+ +
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~a~EGl~KLlL~~~i~~----------~~~vL~~Lll~yF~p~t~~ 168 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLD-SENPELQAIAVEGLCKLLLSGRISD----------PPKVLSRLLLLYFNPSTED 168 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCc----------HHHHHHHHHHHHcCcccCC
Confidence 22221 2356677777774 6688888999999998875542111 03466665555433 2
Q ss_pred hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC
Q 010080 357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS 398 (518)
Q Consensus 357 ~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~ 398 (518)
+..+|.--.+.+-..+..++++ |..+...++|.+-.+....
T Consensus 169 ~~~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 169 NQRLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred cHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 4578888888888888877655 4555556788887777553
No 217
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.98 E-value=21 Score=36.75 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHhhhCCChhhHHHHHhcC--ChhHHHh-hhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchH
Q 010080 179 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQG--ALPPLAR-MMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLL 255 (518)
Q Consensus 179 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g--~i~~L~~-ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l 255 (518)
++..++.-|+.+|+|.+...|. .+..++ .+..++. +....+.++.-.++.+|..+...... ++. ....+
T Consensus 270 p~a~~r~~a~r~L~~~as~~P~---kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l--~~~~l 341 (533)
T KOG2032|consen 270 PSAKSRGMACRGLGNTASGAPD---KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDL--ESYLL 341 (533)
T ss_pred chhHHHHHHHHHHHHHhccCcH---HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cch--hhhch
Confidence 5778999999999999986332 222221 3444454 44445788998998888877643211 111 22333
Q ss_pred H---HHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 256 D---AILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 256 ~---~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
+ .+-.+..+++++++..+...+..|+.
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 3 34456678899999988887777664
No 218
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.93 E-value=0.51 Score=51.45 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=95.4
Q ss_pred HHHHHcCCHH---HHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcC---CCCHHHHHHHHHHHH
Q 010080 119 ETALKAGAIP---VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGE---KSSSPVAEQCAWALG 192 (518)
Q Consensus 119 ~~~i~~g~ip---~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~---~~~~~v~~~a~~~L~ 192 (518)
+.+..+|--| .+.+++....-. ..+|++.|..+......-+..++. .+..++.+ ..++.++..|+-+++
T Consensus 386 Dal~~aGT~~av~~i~~~I~~~~~~--~~ea~~~l~~l~~~~~~Pt~e~l~---~l~~L~~~~~~~~~~~l~~ta~L~~~ 460 (618)
T PF01347_consen 386 DALPQAGTNPAVKFIKDLIKSKKLT--DDEAAQLLASLPFHVRRPTEELLK---ELFELAKSPKVKNSPYLRETALLSLG 460 (618)
T ss_dssp HHHHHH-SHHHHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HHHHH---HHHHHHT-HHHHT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhhcCCCCHHHHH---HHHHHHhCccccCChhHHHHHHHHHH
Confidence 4444555433 444555543321 245777777766443333334333 33333332 245778899998888
Q ss_pred hhhCCChhh---------HHHHHhcCChhHHHhhhC----CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHH
Q 010080 193 NVAGEGEEF---------RNVLLSQGALPPLARMML----PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAIL 259 (518)
Q Consensus 193 nla~d~~~~---------r~~~~~~g~i~~L~~ll~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~ 259 (518)
.+....... ....+....++.|...+. ..+..-...++.+|.|+-. ...++.|.
T Consensus 461 ~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------------~~~i~~l~ 527 (618)
T PF01347_consen 461 SLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------------PESIPVLL 527 (618)
T ss_dssp HHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------GGGHHHHH
T ss_pred HHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------------chhhHHHH
Confidence 886421111 112223345666666655 3356777888999999941 25677788
Q ss_pred HHhccC---ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc-CCCccchhhhhhhhhh
Q 010080 260 RHLKRA---DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGN 322 (518)
Q Consensus 260 ~lL~~~---d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v~~~al~~L~n 322 (518)
.++... +..++..|+|+|..++...++.. .+.+..++.+ ..+.+++..|+.+|-.
T Consensus 528 ~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 528 PYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp TTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred hHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 887765 56899999999998876444222 3444555532 3456677777655443
No 219
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.52 E-value=1.7 Score=46.83 Aligned_cols=132 Identities=11% Similarity=0.071 Sum_probs=75.7
Q ss_pred hHHHHHhhcC---CCCHHHHHHHHHHHHhhhC----CChhhHHHHHhcCChhHHHhhhCC----CChhHHHHHHHHHHHh
Q 010080 168 LPLLIAHLGE---KSSSPVAEQCAWALGNVAG----EGEEFRNVLLSQGALPPLARMMLP----NKGSTVRTAAWALSNL 236 (518)
Q Consensus 168 v~~Lv~lL~~---~~~~~v~~~a~~~L~nla~----d~~~~r~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~nL 236 (518)
+..+..++.+ .+...++..|+-+++++.. +.+.+. ..+....++.+...|.. .+..-...++.+|.|+
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 4445555543 2456788888888887753 211111 11223356666666542 3445566777888887
Q ss_pred hcCCCCCchhhHHHhhchHHHHHHHhc---cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc-CCCccc
Q 010080 237 IKGPDPKPATELIKVDGLLDAILRHLK---RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQL 312 (518)
Q Consensus 237 ~~~~~~~~~~~~i~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v 312 (518)
-.. ..++.+..++. ..+..++..|+|+|..++...+...+ +.+..++.+ ..+.++
T Consensus 474 g~~-------------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 474 GHP-------------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEV 532 (574)
T ss_pred CCh-------------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHH
Confidence 521 33445555554 22457999999999998864443322 344554532 456677
Q ss_pred hhhhhhhhh
Q 010080 313 LIPVLRSLG 321 (518)
Q Consensus 313 ~~~al~~L~ 321 (518)
+..|+.+|-
T Consensus 533 RiaA~~~lm 541 (574)
T smart00638 533 RMAAVLVLM 541 (574)
T ss_pred HHHHHHHHH
Confidence 776665544
No 220
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.39 E-value=1.3 Score=46.82 Aligned_cols=145 Identities=19% Similarity=0.141 Sum_probs=101.9
Q ss_pred cCCHHHHHHHhcC---CCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080 124 AGAIPVLVQCLAF---GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE 200 (518)
Q Consensus 124 ~g~ip~Lv~~L~~---~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~ 200 (518)
+..-|...+...+ -+++.+|..|.-+|..+-+-+.+ .+..-+|.|+..+..+++|.++..|+-.||.++.-...
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~---fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFE---FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 4445555555543 24577878787777766543322 23356899999999889999999999999987652222
Q ss_pred hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080 201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL 280 (518)
Q Consensus 201 ~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L 280 (518)
..+. .-..|.+-|-..+..++++|..++.+|.-.. .+.+.|-++.++.+|.++|.++..-|-..+..+
T Consensus 968 ~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilag-------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 968 TADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred hhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-------ceeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 2221 1234555556678899999999999987442 223579999999999999999888777777777
Q ss_pred hcC
Q 010080 281 SAL 283 (518)
Q Consensus 281 ~~~ 283 (518)
+..
T Consensus 1036 a~K 1038 (1128)
T COG5098 1036 AKK 1038 (1128)
T ss_pred Hhc
Confidence 753
No 221
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.23 E-value=1.9 Score=45.69 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=105.4
Q ss_pred hHHHHHHHhcc----CChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCc
Q 010080 254 LLDAILRHLKR----ADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS 329 (518)
Q Consensus 254 ~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~ 329 (518)
+-|....+..+ .|++++..|..+|..+-+-+.+.+. .-+|.++..+.++++|.++..|.-.+|-++-.-+.
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 33444444443 6788999998888877664444433 34788898887899999999998888877654332
Q ss_pred ccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHH
Q 010080 330 TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV 409 (518)
Q Consensus 330 ~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~a 409 (518)
..+ ..-.+|..-|...+..||+.+..++.++.-.+. +--.|-++.+...|.+.|..+...|-..
T Consensus 968 ~~d-----------e~t~yLyrrL~De~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~f 1031 (1128)
T COG5098 968 TAD-----------EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHF 1031 (1128)
T ss_pred hhH-----------HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHH
Confidence 222 345677888888899999999999999874331 2235778899999999999999999888
Q ss_pred HHHhcCC
Q 010080 410 LGNLCVS 416 (518)
Q Consensus 410 L~nl~~~ 416 (518)
+..++..
T Consensus 1032 ft~~a~K 1038 (1128)
T COG5098 1032 FTQIAKK 1038 (1128)
T ss_pred HHHHHhc
Confidence 8888764
No 222
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.72 E-value=5.2 Score=46.35 Aligned_cols=129 Identities=17% Similarity=0.264 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHH
Q 010080 270 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349 (518)
Q Consensus 270 ~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L 349 (518)
..+++|+..+++...+ ..+.+ .+.+..++..| ..+...+++.|++||+.|+.-++.... ...+...+
T Consensus 794 ~~~a~li~~~la~~r~-f~~sf--D~yLk~Il~~l-~e~~ialRtkAlKclS~ive~Dp~vL~---------~~dvq~~V 860 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARS-FSQSF--DPYLKLILSVL-GENAIALRTKALKCLSMIVEADPSVLS---------RPDVQEAV 860 (1692)
T ss_pred chhHHHHHHHHHhhhH-HHHhh--HHHHHHHHHHh-cCchHHHHHHHHHHHHHHHhcChHhhc---------CHHHHHHH
Confidence 5678888888886433 21111 25677778777 478889999999999999987753211 12344555
Q ss_pred HHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 350 VKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 350 ~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
..-+......||..|.-.+|-.....++.+... ...+.+-..+....|||.|...++.+|..
T Consensus 861 h~R~~DssasVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 861 HGRLNDSSASVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred HHhhccchhHHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 566667778999999999998877666654433 44566667777889999999999999975
No 223
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.45 E-value=17 Score=37.34 Aligned_cols=136 Identities=18% Similarity=0.149 Sum_probs=82.3
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC--hHHHHHh
Q 010080 89 AYHGKGAMQKRVNALRELRRLLSRFEFPPIETAL--KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK--QEETKAL 164 (518)
Q Consensus 89 ~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i--~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~--~~~~~~v 164 (518)
+...+++...+-.|++.|-+..+..+ +.+. ..-.+..++.-|..+.+.+++.||+.+|+-+...- .+.....
T Consensus 265 ~ka~dp~a~~r~~a~r~L~~~as~~P----~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~ 340 (533)
T KOG2032|consen 265 NKATDPSAKSRGMACRGLGNTASGAP----DKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL 340 (533)
T ss_pred HhccCchhHHHHHHHHHHHHHhccCc----HHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence 34455666677788899999877732 2222 24456666666766666788899999999887321 1222222
Q ss_pred cCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC-ChhhHHHHH--hcCChhHHHhhhCCCChhHHHHH
Q 010080 165 LPALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-GEEFRNVLL--SQGALPPLARMMLPNKGSTVRTA 229 (518)
Q Consensus 165 ~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d-~~~~r~~~~--~~g~i~~L~~ll~~~~~~~~~~a 229 (518)
+++.-.+..++.+ .+++++..|...+|.++.- +...++.+. -.+...+++-.|+.+++.+.+++
T Consensus 341 l~ialrlR~l~~s-e~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 341 LNIALRLRTLFDS-EDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred hhHHHHHHHHHHh-cChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH
Confidence 3555566677776 7899999998887776521 112333333 22334455555666666555443
No 224
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.17 E-value=3 Score=32.76 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080 83 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK 162 (518)
Q Consensus 83 ~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~ 162 (518)
.+...+..++++.+..+-.|+..||+++.....+ + .--.+++..+...|+.++ +-+-..|+.+|..++...++.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~-~--~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~~-- 77 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEP-V--IDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPDE-- 77 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcc-h--hhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChHH--
Confidence 3455566667889999999999999988876512 1 222567888888887655 334456999999999765542
Q ss_pred HhcCChHHHHHhhc
Q 010080 163 ALLPALPLLIAHLG 176 (518)
Q Consensus 163 ~v~~~v~~Lv~lL~ 176 (518)
.+|.|+....
T Consensus 78 ----vl~~L~~~y~ 87 (92)
T PF10363_consen 78 ----VLPILLDEYA 87 (92)
T ss_pred ----HHHHHHHHHh
Confidence 2555655443
No 225
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=89.02 E-value=2.7 Score=44.81 Aligned_cols=187 Identities=10% Similarity=0.096 Sum_probs=120.1
Q ss_pred HhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc
Q 010080 206 LSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN 285 (518)
Q Consensus 206 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~ 285 (518)
.+.+++|.|++++...+..++-..+--+-+....- ..++ ....++|.+...+.+.++-++..++-++..|+.--.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L----t~~~-~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL----TKQI-LNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc----CHHh-hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 46679999999999988777765554444444332 1223 357899999999999999999999999988885211
Q ss_pred hhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHH
Q 010080 286 VATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA 365 (518)
Q Consensus 286 ~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~ 365 (518)
.+ .+....+..+..+- .+....+++..--|+|.|........+.-+ ....+..-+.++-..-|+.+.
T Consensus 402 ~~---~Ln~Ellr~~ar~q-~d~~~~irtntticlgki~~~l~~~~R~~v---------L~~aftralkdpf~paR~a~v 468 (690)
T KOG1243|consen 402 KR---NLNGELLRYLARLQ-PDEHGGIRTNTTICLGKIAPHLAASVRKRV---------LASAFTRALKDPFVPARKAGV 468 (690)
T ss_pred hh---hhcHHHHHHHHhhC-ccccCcccccceeeecccccccchhhhccc---------cchhhhhhhcCCCCCchhhhh
Confidence 11 23333444454433 355677888888889998876443332221 223344445555556677777
Q ss_pred HHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010080 366 WVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL 413 (518)
Q Consensus 366 ~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl 413 (518)
|++.-..... .+.=+...++|.++-+.-+.+..++..|-.++...
T Consensus 469 ~~l~at~~~~---~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 469 LALAATQEYF---DQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred HHHhhccccc---chhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 7776543322 22223445788888888888877887777766554
No 226
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=88.83 E-value=26 Score=34.76 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=110.0
Q ss_pred hHHHHHHHhccChhhhHHHHHHHHHHhcc-CCHHHHHHHHhC-CC-HHHHHHHhcCC----C---------hhHHHHHHH
Q 010080 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAA-GSVEHKQLIHSS-EA-LALLLHLLSTS----P---------FDIKKEVAY 408 (518)
Q Consensus 345 ~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~-~~~~~~~~li~~-~~-i~~Li~lL~~~----~---------~~v~~eA~~ 408 (518)
-+..+...|+..++.+...+...+..++. .+......+.+. ++ .+.+..++... + +++|.....
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 37778888888888888899999999988 666666666653 33 45566666321 1 288988886
Q ss_pred HHHHhcCCCCCCCCCchhHHHHHHHHH-hcCchHHHHHhhccCCHHHHHHHHHHHH-HHHccCCCCcc--hhHHHhhchH
Q 010080 409 VLGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFME-LVLRGMPNHEG--TKLVEREDGI 484 (518)
Q Consensus 409 aL~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L~~lL~~~d~~~~~~~l~~l~-~il~~~~~~~~--~~~ie~~ggl 484 (518)
.+..+... +.| .....++ +.+.+..++.-|..++++++..+|+++. .++... ..+. ...+-....+
T Consensus 137 F~Lsfl~~-----~~~----~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~~~fn~~~L 206 (330)
T PF11707_consen 137 FWLSFLSS-----GDP----ELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKCKLFNEWTL 206 (330)
T ss_pred HHHHHHcc-----CCH----HHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhhhhcCHHHH
Confidence 65555543 222 3334444 6678999999999988999999999988 465432 2111 1233444577
Q ss_pred HHHHHHhcCCCH----HHHHHHHHHHHhhcCc
Q 010080 485 DAMERFQFHENE----DLRNMANGLVDKYFGE 512 (518)
Q Consensus 485 ~~l~~L~~~~~~----~i~~~a~~il~~~f~~ 512 (518)
.+|..|-..+++ .+.+.|.+++..++.+
T Consensus 207 ~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 207 SQLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 888888888777 9999999999887754
No 227
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.67 E-value=23 Score=36.99 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=104.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCC---CccchhhhhhhhhhhhcCCCcccc
Q 010080 256 DAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN---SLQLLIPVLRSLGNLVAGDSSTIS 332 (518)
Q Consensus 256 ~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~---~~~v~~~al~~L~nl~~~~~~~~~ 332 (518)
..+..++.+++..-+..+.-.|..++. +......++....+..|..++.+.. +..++...++++..+....-..-.
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456677777777777778888888886 5667788888888888888875221 234556667777766544322222
Q ss_pred eeeccCCCchhhhHHHHHHHhccC--hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHH
Q 010080 333 DVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 410 (518)
Q Consensus 333 ~~i~~G~~~~~~~l~~L~~lL~~~--~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL 410 (518)
.+- ..++.....+.+-. +..+-..|...+-++.-+++...+.+.+.--+..|+..++..+..++..|.-.+
T Consensus 165 ~~~-------~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 165 SVS-------NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL 237 (713)
T ss_pred ecc-------cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence 221 23444455554322 346778888899999988877778888888899999999999988888866655
Q ss_pred HHhcCC
Q 010080 411 GNLCVS 416 (518)
Q Consensus 411 ~nl~~~ 416 (518)
..+...
T Consensus 238 nal~~~ 243 (713)
T KOG2999|consen 238 NALFRK 243 (713)
T ss_pred HHHHhh
Confidence 555443
No 228
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=88.45 E-value=11 Score=37.51 Aligned_cols=158 Identities=17% Similarity=0.201 Sum_probs=108.9
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhC-CChhhHHHHHhc-C-ChhHHHhhhCCC-----C--------hhHHHHHHH
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAG-EGEEFRNVLLSQ-G-ALPPLARMMLPN-----K--------GSTVRTAAW 231 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~-d~~~~r~~~~~~-g-~i~~L~~ll~~~-----~--------~~~~~~a~~ 231 (518)
+..+...|++ ....+...|+..|..++. ++......+... + -.+.+.+++... . .+++.+.+.
T Consensus 58 ~k~lyr~L~~-~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSS-SKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCc-CcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 5667777776 567888899999999998 776666666554 2 234566666421 1 288888888
Q ss_pred HHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHH-HhhcCCc---hhhhHHHhcCchHHHHHHHccC
Q 010080 232 ALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVV-YLSALSN---VATSLLVKSGVLQLLVERLATS 307 (518)
Q Consensus 232 ~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~-~L~~~~~---~~~~~~~~~g~~~~Lv~lL~~~ 307 (518)
.+..+....++....+++...+.+..+.+.|..++.+++...+-+|. ++..... ...-.++...++..|+.+. ..
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly-~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY-SR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh-cc
Confidence 88777776556666677777788999999999988899999888887 4554221 1122334556778888866 34
Q ss_pred CCc----cchhhhhhhhhhhhcCC
Q 010080 308 NSL----QLLIPVLRSLGNLVAGD 327 (518)
Q Consensus 308 ~~~----~v~~~al~~L~nl~~~~ 327 (518)
.++ .+...+-..|-.+++..
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCC
Confidence 444 56666777777777654
No 229
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=88.11 E-value=8.9 Score=39.38 Aligned_cols=257 Identities=11% Similarity=0.070 Sum_probs=139.0
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC-ChHHHHHhhcCCCCHH
Q 010080 104 RELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSP 182 (518)
Q Consensus 104 ~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~-~v~~Lv~lL~~~~~~~ 182 (518)
..|.+++......+....+....+-.|+.++.++++.+ +-..-..|+++-+.....+..+.. ....|..++.......
T Consensus 112 ~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rE-R~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~ 190 (409)
T PF01603_consen 112 EILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRE-RDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHN 190 (409)
T ss_dssp HHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHH-HHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--S
T ss_pred HHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccccc
Confidence 44445554433332233455667788899998877443 234667788877666666766663 5667777777555556
Q ss_pred HHHHHHHHHHhhhCCCh-hhHHHHHhcCChhHHHhhhCCCC-hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHH
Q 010080 183 VAEQCAWALGNVAGEGE-EFRNVLLSQGALPPLARMMLPNK-GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILR 260 (518)
Q Consensus 183 v~~~a~~~L~nla~d~~-~~r~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~ 260 (518)
-...++..+|.|..+.. ..+..... =....|+.|.+.+. .........++..++.. +|.. ...++..|++
T Consensus 191 gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k-dp~l------~~~~i~~llk 262 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK-DPSL------AEPVIKGLLK 262 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGG------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-Cchh------HHHHHHHHHH
Confidence 66788889998876432 22221110 11234555555553 34467777888877743 2221 1233333443
Q ss_pred HhccCChhHHHHHHHHHHHhhcCC-chhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCC
Q 010080 261 HLKRADEELTTEVAWVVVYLSALS-NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGH 339 (518)
Q Consensus 261 lL~~~d~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~ 339 (518)
.==..++.=....+.-+..+...- ++....+ ...++..+...+ ++.+.+|...|+....|-. ....+.+.
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci-~S~h~qVAErAl~~w~n~~-----~~~li~~~-- 333 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCI-SSPHFQVAERALYFWNNEY-----FLSLISQN-- 333 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHH-TSSSHHHHHHHHGGGGSHH-----HHHHHHCT--
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHh-CCCCHHHHHHHHHHHCCHH-----HHHHHHhC--
Confidence 332344444444445555555432 2222222 234556666666 5778888888887776531 11111111
Q ss_pred CchhhhHHHHHHHhcc-----ChhhhHHHHHHHHHHhccCCHHHHH
Q 010080 340 GITDQVIAVLVKCLKS-----EHRVLKKEAAWVLSNIAAGSVEHKQ 380 (518)
Q Consensus 340 ~~~~~~l~~L~~lL~~-----~~~~i~~~a~~~Lsnl~~~~~~~~~ 380 (518)
...++|.+..-|.. =+..|+..|+-++.-+..-+++...
T Consensus 334 --~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 334 --SRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFD 377 (409)
T ss_dssp --HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHH
Confidence 23477777777643 1458999998888888776665443
No 230
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=87.89 E-value=2.8 Score=44.77 Aligned_cols=134 Identities=17% Similarity=0.231 Sum_probs=90.6
Q ss_pred hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccc
Q 010080 252 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI 331 (518)
Q Consensus 252 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~ 331 (518)
..++|.|..-+++.+..++..++..+...++.-+ -..+..-++|.+..+...+.+..++..++-|++.++..-| .
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD--~ 462 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD--K 462 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH--H
Confidence 4677777777778888888888888888776433 2234456778887776567788899999999999982221 1
Q ss_pred ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCC
Q 010080 332 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP 399 (518)
Q Consensus 332 ~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~ 399 (518)
-.++ ..+..+.......++.+......+..++....... +.++.++++|.++-+...+.
T Consensus 463 ~~v~--------d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 463 AAVL--------DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHhH--------HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 1122 24445555566778888877777777776543222 44566678888888876654
No 231
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=87.44 E-value=8.6 Score=34.45 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=61.0
Q ss_pred CCHHHHHHHHhCCCHHHHHHHhcC---------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH-hcCchHHH
Q 010080 374 GSVEHKQLIHSSEALALLLHLLST---------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV-GRGCLSGF 443 (518)
Q Consensus 374 ~~~~~~~~li~~~~i~~Li~lL~~---------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~-~~g~i~~L 443 (518)
.....++.+++.|++..|+++|.. .+.....+++.||..+.... .=+..++ ..+++..|
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~-----------~G~~~v~~~~~~v~~i 163 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK-----------YGLEAVLSHPDSVNLI 163 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH-----------HHHHHHHCSSSHHHHH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH-----------HHHHHHHcCcHHHHHH
Confidence 345678888888999999998832 34578889999999988742 1134445 57999999
Q ss_pred HHhhccCCHHHHHHHHHHHHHHH
Q 010080 444 IDLVRSADIEAARLGLQFMELVL 466 (518)
Q Consensus 444 ~~lL~~~d~~~~~~~l~~l~~il 466 (518)
+..|.+++..+...+++.|..++
T Consensus 164 ~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 164 ALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999888764
No 232
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.88 E-value=5.9 Score=45.98 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc
Q 010080 226 VRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA 305 (518)
Q Consensus 226 ~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~ 305 (518)
..++.|....|+... +...- -.+++..++.++..+...++.-|+.||+.+...++... ....+-..+...+
T Consensus 794 ~~~a~li~~~la~~r---~f~~s--fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~- 864 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHAR---SFSQS--FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRL- 864 (1692)
T ss_pred chhHHHHHHHHHhhh---HHHHh--hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhh-
Confidence 467778777777542 11111 23677888888888888999999999999998654221 1122223333344
Q ss_pred cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhC
Q 010080 306 TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS 385 (518)
Q Consensus 306 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~ 385 (518)
...+..|+..|+-.+|..+...++... .....+..-+......||+.++.++.-++...|..-.
T Consensus 865 ~DssasVREAaldLvGrfvl~~~e~~~-----------qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~----- 928 (1692)
T KOG1020|consen 865 NDSSASVREAALDLVGRFVLSIPELIF-----------QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK----- 928 (1692)
T ss_pred ccchhHHHHHHHHHHhhhhhccHHHHH-----------HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-----
Confidence 256778999999999988876653322 2445555555666779999999999999877654322
Q ss_pred CCHHHHHHHh---cCCChhHHHHHHHHHHHhcCC
Q 010080 386 EALALLLHLL---STSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 386 ~~i~~Li~lL---~~~~~~v~~eA~~aL~nl~~~ 416 (518)
+......+| .+.+..+++-+..++.++=..
T Consensus 929 -i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 929 -IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred -HHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 233444444 334444888888888887443
No 233
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.08 E-value=4.1 Score=32.00 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=61.8
Q ss_pred hHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHH
Q 010080 212 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL 291 (518)
Q Consensus 212 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~ 291 (518)
...+..+.++.+.++..+...|+.|.+.++ ........++..+...|.++|+-|-..|..+|..|++..+
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p------ 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP------ 75 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh------
Confidence 345566677888999999999999998764 1123345788888999999999999999999999997543
Q ss_pred HhcCchHHHHHHH
Q 010080 292 VKSGVLQLLVERL 304 (518)
Q Consensus 292 ~~~g~~~~Lv~lL 304 (518)
..+++.|++..
T Consensus 76 --~~vl~~L~~~y 86 (92)
T PF10363_consen 76 --DEVLPILLDEY 86 (92)
T ss_pred --HHHHHHHHHHH
Confidence 23456666655
No 234
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.01 E-value=75 Score=38.46 Aligned_cols=283 Identities=15% Similarity=0.102 Sum_probs=132.3
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhH-HHHHHHHHHHhhcCCCCCch
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGST-VRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~-~~~a~~~L~nL~~~~~~~~~ 245 (518)
+...++..|.. +++..+..+..+++.++...+.. ..-.+....++.-+.+....+ +-.-..++..+-+....-..
T Consensus 877 ~~~l~~~sl~~-~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 877 ALTLIVNSLIN-PNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHhhhhcc-CChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 44455555655 67788888888888887643221 111112233333334433333 33334444445443221111
Q ss_pred hhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080 246 TELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~ 324 (518)
.+. ....+..+..+.. +.++.|+..++.+++++.+.........++ ..+..+..+|... +........+++...
T Consensus 953 ~qh--l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~--p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen 953 GQH--LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSV--PTSHVEVHQCYNRCF 1027 (2067)
T ss_pred chh--cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCC--Ccchhhhhhhhcccc
Confidence 222 2355666666666 445699999999999999844333322222 2233344444322 222222223333322
Q ss_pred cCCCcccceeecc-CCCc------------hhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHH
Q 010080 325 AGDSSTISDVLVP-GHGI------------TDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL 391 (518)
Q Consensus 325 ~~~~~~~~~~i~~-G~~~------------~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~L 391 (518)
.+++.. ..++.+ |.++ ..-.+-...-++.++++-++.++..++.++---.+.+.. -.-+++.|
T Consensus 1028 ~~~~~~-~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L 1103 (2067)
T KOG1822|consen 1028 NGDDDE-DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQL 1103 (2067)
T ss_pred ccchhH-HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHH
Confidence 222111 011110 1000 011233334455677888899999999887543322211 11245566
Q ss_pred HHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH---------------hcCchHHHHHhhcc-CCHHHH
Q 010080 392 LHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV---------------GRGCLSGFIDLVRS-ADIEAA 455 (518)
Q Consensus 392 i~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~---------------~~g~i~~L~~lL~~-~d~~~~ 455 (518)
..++.+.-.-.|+.+..++.-+.... ...+-++.+.+. +.|.=-.+..+|+. .|.+++
T Consensus 1104 ~~~l~s~~~i~r~~~~~clrql~~Re------~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~ 1177 (2067)
T KOG1822|consen 1104 CSLLSSSYLILRRASFSCLRQLVQRE------ASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLL 1177 (2067)
T ss_pred HHHhcchhhhhhhhHHhhhhHHhHHH------HHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHH
Confidence 66555543333333333333332210 000011111111 33444455566653 567788
Q ss_pred HHHHHHHHHHHcc
Q 010080 456 RLGLQFMELVLRG 468 (518)
Q Consensus 456 ~~~l~~l~~il~~ 468 (518)
+.+++.+.+++..
T Consensus 1178 ~~I~~tl~~~~~~ 1190 (2067)
T KOG1822|consen 1178 KNILETLSRMLNS 1190 (2067)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876643
No 235
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.43 E-value=7.9 Score=34.14 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=78.1
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhC--CCHHHHHHHhcCCC-hhHHHHHHHHHHHhcCCCCCC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS--EALALLLHLLSTSP-FDIKKEVAYVLGNLCVSPTEG 420 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~--~~i~~Li~lL~~~~-~~v~~eA~~aL~nl~~~~~~~ 420 (518)
.....+..+|+++++.-|-.++..+.-++..++ -..+.++ ..+..|+.+|+..+ ..+++.|+.++..+....
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~--- 99 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI--- 99 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---
Confidence 567788889999888777777777776665442 1233333 24778888887654 567888889999987642
Q ss_pred CCCchhHHHHHHHHHhc---CchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC
Q 010080 421 EGKPKLIQEHLVSLVGR---GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN 471 (518)
Q Consensus 421 ~~~~~~~~~~~~~l~~~---g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~ 471 (518)
++.|+ -.+.+..- ++++.++.+++. ......++++|..++...+.
T Consensus 100 ~~~p~----l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 100 RGKPT----LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred cCCCc----hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 34542 23444322 456666666654 56777899999999986654
No 236
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=85.40 E-value=49 Score=34.36 Aligned_cols=194 Identities=14% Similarity=0.164 Sum_probs=102.3
Q ss_pred hchHHHHHHHhc-cCChhHHHHHHHHHHHhhcC----------CchhhhHHHhcCchHHHHHHHccC--CCccchhh-h-
Q 010080 252 DGLLDAILRHLK-RADEELTTEVAWVVVYLSAL----------SNVATSLLVKSGVLQLLVERLATS--NSLQLLIP-V- 316 (518)
Q Consensus 252 ~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~----------~~~~~~~~~~~g~~~~Lv~lL~~~--~~~~v~~~-a- 316 (518)
..+|..+.+++. ++.-.++.+++|.|++|--. -+....++-+.-++...++++... ..++..-+ .
T Consensus 96 nevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv 175 (589)
T PF11229_consen 96 NEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV 175 (589)
T ss_pred HHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence 456666777776 55668899999999876421 123344555666777777777522 12332222 1
Q ss_pred hhhhhhhhc-CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHH-HHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080 317 LRSLGNLVA-GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW-VLSNIAAGSVEHKQLIHSSEALALLLHL 394 (518)
Q Consensus 317 l~~L~nl~~-~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~-~Lsnl~~~~~~~~~~li~~~~i~~Li~l 394 (518)
--++.-+++ |...+.-. ++ +..++.+|+++ +. ...++..+.- ++.+. .+......++..=+.|+++.-
T Consensus 176 kvvl~~ia~vgeS~qyPP-VN-----WaalLsPLMRl-nf-GeEvq~lCLeiAvtQa--qSSqsAa~fLg~WlsPpli~s 245 (589)
T PF11229_consen 176 KVVLKPIATVGESYQYPP-VN-----WAALLSPLMRL-NF-GEEVQQLCLEIAVTQA--QSSQSAAMFLGSWLSPPLIHS 245 (589)
T ss_pred HHHHHHhhhcCCCCCCCC-cc-----HHHHhhHHHhc-cc-cHHHHHHHHHHHHHhc--cccccHHHHHHhhcCcchhhh
Confidence 233444443 22233222 23 34567777776 22 3566666553 33333 233445667777778888887
Q ss_pred hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHc
Q 010080 395 LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR 467 (518)
Q Consensus 395 L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~ 467 (518)
|+... ++.-...+.-...+- | .++++.+++.=.+..|-..-.-.+++++..+|.+|..-++
T Consensus 246 Ls~~t---k~~L~~Sl~~wmkhV------s---edqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMK 306 (589)
T PF11229_consen 246 LSVNT---KKYLFESLSLWMKHV------S---EDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMK 306 (589)
T ss_pred hhHHH---HHHHHHHHHHHHhhC------C---HHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhc
Confidence 76543 322222222222211 1 3566666554444444433334556777777777766554
No 237
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=84.88 E-value=47 Score=33.62 Aligned_cols=267 Identities=13% Similarity=0.106 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc----c-------CChhHHHHHHHHHHHhhcCCchhhhHH
Q 010080 223 GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK----R-------ADEELTTEVAWVVVYLSALSNVATSLL 291 (518)
Q Consensus 223 ~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~----~-------~d~~v~~~a~~~L~~L~~~~~~~~~~~ 291 (518)
.+-+..|--+|.+.-+..+..+....+ ..-++.+++.+. . .|..+...|+.+|+++... ++....+
T Consensus 7 ~~~r~daY~~l~~~l~~~~~~~~~~~l--~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~~~l 83 (372)
T PF12231_consen 7 RSSRLDAYMTLNNALKAYDNLPDRQAL--QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIVSTL 83 (372)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHHhhC
Confidence 344555566666666554444444332 355566665553 2 3568899999999998863 2222222
Q ss_pred Hhc---CchHHHHHHHccCC-CccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc-cChhhhHHHHHH
Q 010080 292 VKS---GVLQLLVERLATSN-SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAW 366 (518)
Q Consensus 292 ~~~---g~~~~Lv~lL~~~~-~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-~~~~~i~~~a~~ 366 (518)
-+. -++...+..|...+ +..+..+.+++|+.--.+....+.... ..++..+..+-+ -+...+..|++.
T Consensus 84 ~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~-------~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 84 SDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRV-------ERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhH-------HHHHHHHHHhhccCCchhHHHHHHH
Confidence 111 13344555553222 334567778888754333321111111 123333333333 355688999999
Q ss_pred HHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc-------
Q 010080 367 VLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC------- 439 (518)
Q Consensus 367 ~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~------- 439 (518)
++-++....++....-++ --+|.++..+-+...+++..|...+..+..... .+ ..+...+....+...
T Consensus 157 i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~---~~-~~~s~~~~~~~~~~~~~~~~~~ 231 (372)
T PF12231_consen 157 IYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLG---PN-KELSKSVLEDLQRSLENGKLIQ 231 (372)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhC---hh-HHHHHHHHHHhccccccccHHH
Confidence 999998766554322211 257788888877777788776666555533210 00 001112222223222
Q ss_pred --hHHHHHhhcc-CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 010080 440 --LSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD 507 (518)
Q Consensus 440 --i~~L~~lL~~-~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~ 507 (518)
.+.|..|+.. ++....-.+-.++-.++... .-.....+.+ -+.-.+...+++++.++..|..--.
T Consensus 232 ~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~-~~~~w~~~n~--wL~v~e~cFn~~d~~~k~~A~~aW~ 299 (372)
T PF12231_consen 232 LYCERLKEMIKSKDEYKLAMQIWSVVILLLGSS-RLDSWEHLNE--WLKVPEKCFNSSDPQVKIQAFKAWR 299 (372)
T ss_pred HHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCc-hhhccHhHhH--HHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2235556666 33334444444555555221 0001111111 2333455677888888887754443
No 238
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=84.72 E-value=20 Score=38.62 Aligned_cols=204 Identities=17% Similarity=0.150 Sum_probs=117.5
Q ss_pred ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHH
Q 010080 222 KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLV 301 (518)
Q Consensus 222 ~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv 301 (518)
++.-+..-...|+++.-.. .. -+....++|.|+..+.+ ..++-..+=.+.+++.+.+ +.-....+++.|.
T Consensus 286 dn~qKs~Flk~Ls~~ip~f----p~-rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~ 355 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTF----PA-RVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALK 355 (700)
T ss_pred CcHHHHHHHHHHHHhhccC----CH-HHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccc---hhhhhhhhhHHHH
Confidence 3333444555566665332 11 22346788888877743 2333333333444444322 1112344567777
Q ss_pred HHHccCCCccchhhhhhhhhhh---hcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHH
Q 010080 302 ERLATSNSLQLLIPVLRSLGNL---VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEH 378 (518)
Q Consensus 302 ~lL~~~~~~~v~~~al~~L~nl---~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~ 378 (518)
..+......++ .+.++-|+ ..-.+ ...+ ...++|.|..-+.+.+..++..+...+..++..-+
T Consensus 356 pi~~~~~~~~~---~l~i~e~mdlL~~Kt~--~e~~-------~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-- 421 (700)
T KOG2137|consen 356 PIYSASDPKQA---LLFILENMDLLKEKTP--PEEV-------KEKILPLLYRSLEDSDVQIQELALQILPTVAESID-- 421 (700)
T ss_pred HHhccCCcccc---hhhHHhhHHHHHhhCC--hHHH-------HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--
Confidence 76642222222 22233333 11111 1112 34689999999999999999999999988865322
Q ss_pred HHHHHhCCCHHHHHHHh-cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc---hHHHHHhhccCCHHH
Q 010080 379 KQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC---LSGFIDLVRSADIEA 454 (518)
Q Consensus 379 ~~~li~~~~i~~Li~lL-~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~---i~~L~~lL~~~d~~~ 454 (518)
-..+..-++|.|-++. ++.+..++..++.|+.-+.. .+-...+ +.++..-....|+.+
T Consensus 422 -~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-----------------~lD~~~v~d~~lpi~~~~~~~dp~i 483 (700)
T KOG2137|consen 422 -VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-----------------RLDKAAVLDELLPILKCIKTRDPAI 483 (700)
T ss_pred -HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-----------------HHHHHHhHHHHHHHHHHhcCCCcHH
Confidence 1234455888888885 66788899999999988753 2222223 444445555688999
Q ss_pred HHHHHHHHHHHHc
Q 010080 455 ARLGLQFMELVLR 467 (518)
Q Consensus 455 ~~~~l~~l~~il~ 467 (518)
+...+.+.+++.-
T Consensus 484 v~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 484 VMGFLRIYEALAL 496 (700)
T ss_pred HHHHHHHHHHHHh
Confidence 9888888877764
No 239
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.71 E-value=14 Score=39.64 Aligned_cols=192 Identities=9% Similarity=0.038 Sum_probs=112.6
Q ss_pred HHHHHHccCCCccchhhhhhhhhhhhcCCCcc-----cceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080 299 LLVERLATSNSLQLLIPVLRSLGNLVAGDSST-----ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 373 (518)
Q Consensus 299 ~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~-----~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~ 373 (518)
.|..-| +..+..|+..|+..+-++-.--+.. .+.+++ .-...|..+|.++-+.||..|..-++-++.
T Consensus 178 ~l~R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-------kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s 249 (1005)
T KOG1949|consen 178 ILWRGL-KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-------KQFEELYSLLEDPYPMVRSTAILGVCKITS 249 (1005)
T ss_pred HHHHhh-ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-------HHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 334444 4677888988888888776432222 133332 456788999999999999999988887776
Q ss_pred CCHHHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCH
Q 010080 374 GSVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADI 452 (518)
Q Consensus 374 ~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~ 452 (518)
-.-+.+-.-+--.++..++.-+. +...+||......|..+..++. +..+.+. ++|.+--.|.++..
T Consensus 250 ~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~------------sh~~le~-~Lpal~~~l~D~se 316 (1005)
T KOG1949|consen 250 KFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL------------SHPLLEQ-LLPALRYSLHDNSE 316 (1005)
T ss_pred HHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc------------chhHHHH-HHHhcchhhhccch
Confidence 44333322111124444444443 3445788888888888876531 1122221 24556566666777
Q ss_pred HHHHHHHHHHHHHHccCCCCcchhHHHhhchHH-HHHHHhcCCCHHHHHHHHHHHHhhcCccCCC
Q 010080 453 EAARLGLQFMELVLRGMPNHEGTKLVEREDGID-AMERFQFHENEDLRNMANGLVDKYFGEDYGL 516 (518)
Q Consensus 453 ~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~-~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~ 516 (518)
.+.....+.|..|- +... ..+-..-.+| .|..|-.+.-+--+..+.-|+..||+....+
T Consensus 317 ~VRvA~vd~ll~ik----~vra-~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~e 376 (1005)
T KOG1949|consen 317 KVRVAFVDMLLKIK----AVRA-AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPE 376 (1005)
T ss_pred hHHHHHHHHHHHHH----hhhh-hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcH
Confidence 77666666665552 1111 1222222334 4455555555555677888899999877644
No 240
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.53 E-value=43 Score=35.39 Aligned_cols=109 Identities=11% Similarity=0.100 Sum_probs=71.7
Q ss_pred CChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHH
Q 010080 156 GKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSN 235 (518)
Q Consensus 156 ~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n 235 (518)
..++....+-|.+-.++..+.+ ++..|+..++.+|+-+.- +-.-.+..+-+|.+..|..-+-...+.+++.|+.+|+.
T Consensus 81 ~dpeg~~~V~~~~~h~lRg~es-kdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~ 158 (885)
T COG5218 81 DDPEGEELVAGTFYHLLRGTES-KDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCY 158 (885)
T ss_pred CChhhhHHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3444444444667777777776 788999999999988875 22223466677888888876667778999999999999
Q ss_pred hhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHH
Q 010080 236 LIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEV 273 (518)
Q Consensus 236 L~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a 273 (518)
+-....... ......|+.+++ +++.+|+..+
T Consensus 159 ~Qe~~~nee-------n~~~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 159 YQEMELNEE-------NRIVNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred HHhccCChH-------HHHHHHHHHHHhcCcHHHHHHHH
Confidence 875533221 122334455554 3445666554
No 241
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=83.02 E-value=42 Score=35.15 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=97.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCC---hHHHHHHHHHHHHHhcCChHHHH---Hh
Q 010080 91 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSP---DEQLLEAAWCLTNIAAGKQEETK---AL 164 (518)
Q Consensus 91 ~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~---~~~~~eA~~~L~nia~~~~~~~~---~v 164 (518)
+.+++...++.|+..+.. +|... ..+.+++....+..|..++..+.. ..+ -+.+|+.++..-.-... .+
T Consensus 92 l~~~~~~~~~~a~k~l~s-ls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~---L~~~L~af~elmehgvvsW~~~ 166 (713)
T KOG2999|consen 92 LTEGNNISKMEALKELDS-LSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSEL---LSTSLRAFSELMEHGVVSWESV 166 (713)
T ss_pred HhCCCcHHHHHHHHHHhh-ccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHH---HHHHHHHHHHHHhhceeeeeec
Confidence 348888899999999988 56653 456789998999999999986542 122 23344444422111110 11
Q ss_pred c-CChHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 010080 165 L-PALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239 (518)
Q Consensus 165 ~-~~v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 239 (518)
- ..|-....+... -.+..+-..|+..|-++...++..++.+.+.--+..|++.++..+..+...|.-.+-.+...
T Consensus 167 ~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 167 SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 1 233334444321 13456778888999998887888999999999999999999988888888877666666654
No 242
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.83 E-value=28 Score=37.50 Aligned_cols=104 Identities=12% Similarity=0.020 Sum_probs=73.0
Q ss_pred CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
+.+..++....+ ++..|+..++..|..+.... .-++..+-.+....|..=+....+.++..|+.+|+.+-..+...
T Consensus 85 ~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTES-KDKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHHhcccC-cchhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence 455566666655 67899999999999998744 33444555566777776666777899999999999998443221
Q ss_pred hhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHH
Q 010080 246 TELIKVDGLLDAILRHLK-RADEELTTEVAWVVV 278 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~ 278 (518)
...+...+..+++ +++++|+..++..+.
T Consensus 161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 2356667777776 566788887766543
No 243
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.63 E-value=3 Score=34.58 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=51.2
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhc--------CCCHHHHHHHHHHHHhhc
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF--------HENEDLRNMANGLVDKYF 510 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~--------~~~~~i~~~a~~il~~~f 510 (518)
++..|..=|+.+++.+..++|.+|..++..++......+......+..+.+... ..+..|+..|.++++-.|
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 456677778888888989999999999987753211122223333334444433 236689999999999999
Q ss_pred Ccc
Q 010080 511 GED 513 (518)
Q Consensus 511 ~~~ 513 (518)
+++
T Consensus 119 ~~~ 121 (122)
T cd03572 119 SYS 121 (122)
T ss_pred ccC
Confidence 875
No 244
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.63 E-value=1.1e+02 Score=36.12 Aligned_cols=148 Identities=11% Similarity=0.110 Sum_probs=93.4
Q ss_pred cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080 294 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 373 (518)
Q Consensus 294 ~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~ 373 (518)
.|++|.|-.-|. +.+..++..|...+|.+....+.+.. +. .......++.-+...+..+|.++.-...++..
T Consensus 258 ~~vip~l~~eL~-se~~~~Rl~a~~lvg~~~~~~~~~l~---~~----~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~ 329 (1266)
T KOG1525|consen 258 LAVIPQLEFELL-SEQEEVRLKAVKLVGRMFSDKDSQLS---ET----YDDLWSAFLGRFNDISVEVRMECVESIKQCLL 329 (1266)
T ss_pred HHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhcchhhhc---cc----chHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence 478888888774 78889999999999999977765443 11 12455566666677788999999999999887
Q ss_pred CCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHH
Q 010080 374 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE 453 (518)
Q Consensus 374 ~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~ 453 (518)
.++....... ..-.+-. .+.|++++.....++.-+.. .+..-.++.. .+..+-+.+.++-..
T Consensus 330 ~~~~~~~~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~v------------~~~~l~~~~~-ll~~~~eR~rDKk~~ 391 (1266)
T KOG1525|consen 330 NNPSIAKAST---ILLALRE--RDLDEDVRVRTQVVIVACDV------------MKFKLVYIPL-LLKLVAERLRDKKIK 391 (1266)
T ss_pred cCchhhhHHH---HHHHHHh--hcCChhhhheeeEEEEEeeh------------hHhhhhhhHH-HHHHHHHHHhhhhHH
Confidence 7655443321 1222222 33444444333222221111 0111222233 566666777788889
Q ss_pred HHHHHHHHHHHHHc
Q 010080 454 AARLGLQFMELVLR 467 (518)
Q Consensus 454 ~~~~~l~~l~~il~ 467 (518)
|...|+..|..+.+
T Consensus 392 VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 392 VRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888876
No 245
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=82.36 E-value=13 Score=41.34 Aligned_cols=189 Identities=13% Similarity=0.089 Sum_probs=114.4
Q ss_pred HHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeecc
Q 010080 258 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP 337 (518)
Q Consensus 258 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~ 337 (518)
+..-+.+.+-.-+..++-.+.-+..... ..-.-...|.+-.+......+.+..+...++.+|.-|+..-........
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-- 334 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-- 334 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH--
Confidence 3333445554455555555555554222 1111112344555555554566777778888889888876543332222
Q ss_pred CCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080 338 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 417 (518)
Q Consensus 338 G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 417 (518)
.+++|.|+.-+......++..+.-++--+...++ -..+.+.++..+++.++.++.++...+.......
T Consensus 335 -----~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 335 -----KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred -----HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 3577888888877777666655555444433221 1136778889999999999998666665554432
Q ss_pred CCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080 418 TEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 470 (518)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~ 470 (518)
.+ .++ ..-.-.++++.++....+.|.++...+++++..+++...
T Consensus 403 ~~--~~~-------~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 403 GP--KTV-------EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred CC--cCc-------chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 10 111 111224578889999999999999999999998887543
No 246
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=81.34 E-value=91 Score=38.32 Aligned_cols=206 Identities=10% Similarity=0.034 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHHhhhCCC---hhhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhch
Q 010080 179 SSSPVAEQCAWALGNVAGEG---EEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGL 254 (518)
Q Consensus 179 ~~~~v~~~a~~~L~nla~d~---~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~ 254 (518)
++..+...|+..|..++... ++....-.+...+.|+..++.+ .+.++++.++.|+.+|...... -+ ..+
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~-----nI--kSG 1221 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN-----NV--KSG 1221 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh-----hh--hcC
Confidence 46677777777777776422 2323333455678888887774 4789999999999998765321 22 235
Q ss_pred HHHHHHHhc----cCChhHHHHHHHHHHHhhcCCchhhhHHHh--cCchHHHHHHHc----cCCCccchhhhhhhhhhhh
Q 010080 255 LDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLVK--SGVLQLLVERLA----TSNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 255 l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~~~~Lv~lL~----~~~~~~v~~~al~~L~nl~ 324 (518)
-+.+..++. ...+.+...+.-++..+... ....+.. .+.+..+|..|. ...+.++-..|+..|.+++
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d---~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE---YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh---hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence 555555554 44567777777777766642 2222211 233333333332 2223455556666665441
Q ss_pred ----cCCC-----------------------cccceeeccCCCchhhhHHHHHH---HhccChhhhHHHHHHHHHHhccC
Q 010080 325 ----AGDS-----------------------STISDVLVPGHGITDQVIAVLVK---CLKSEHRVLKKEAAWVLSNIAAG 374 (518)
Q Consensus 325 ----~~~~-----------------------~~~~~~i~~G~~~~~~~l~~L~~---lL~~~~~~i~~~a~~~Lsnl~~~ 374 (518)
.+.- .....+.+.. ......+|.|.. +...+++.||..|+-+|-.+...
T Consensus 1299 ~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~ 1377 (1780)
T PLN03076 1299 TKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKD-DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRN 1377 (1780)
T ss_pred HHHHhccccccccccccccccccccccccccccccccccch-hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 1100 0000000000 000123444444 45667889999999998777642
Q ss_pred -----CHHHHHHHHhCCCHHHHHHHhc
Q 010080 375 -----SVEHKQLIHSSEALALLLHLLS 396 (518)
Q Consensus 375 -----~~~~~~~li~~~~i~~Li~lL~ 396 (518)
+++.-..+++ +++.+++..++
T Consensus 1378 yG~~Fs~~~W~~if~-~VLFPIFd~l~ 1403 (1780)
T PLN03076 1378 HGHLFSLPLWERVFE-SVLFPIFDYVR 1403 (1780)
T ss_pred hhccCCHHHHHHHHH-HHHHHHHHHHH
Confidence 2233333444 46666666664
No 247
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.21 E-value=4.3 Score=44.40 Aligned_cols=180 Identities=16% Similarity=0.142 Sum_probs=105.8
Q ss_pred HHHHHHHHHhhhCCCh-------hhHHHHHhcCChhHHHhhhCC--------CChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080 184 AEQCAWALGNVAGEGE-------EFRNVLLSQGALPPLARMMLP--------NKGSTVRTAAWALSNLIKGPDPKPATEL 248 (518)
Q Consensus 184 ~~~a~~~L~nla~d~~-------~~r~~~~~~g~i~~L~~ll~~--------~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 248 (518)
.++.+|-+-.+....+ +....++..+++..++.+.+- +..++.+.|.-+|.-+..- |....++
T Consensus 569 ~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i--P~iq~~L 646 (1516)
T KOG1832|consen 569 VEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI--PDIQKAL 646 (1516)
T ss_pred HHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec--chHHHHH
Confidence 4666676666654444 333456778888888888763 2345666666666555432 3332222
Q ss_pred HHh-------hchHHHHHHHhc----cCChhHHHHHHHHHHHhhcCCchhhhHHH----hcCchHHHHHHHccCCCccch
Q 010080 249 IKV-------DGLLDAILRHLK----RADEELTTEVAWVVVYLSALSNVATSLLV----KSGVLQLLVERLATSNSLQLL 313 (518)
Q Consensus 249 i~~-------~~~l~~L~~lL~----~~d~~v~~~a~~~L~~L~~~~~~~~~~~~----~~g~~~~Lv~lL~~~~~~~v~ 313 (518)
+.. ..++..|+..-. ..|++++..|+.+|-++...+++.....+ ....-+.. .|...+....+
T Consensus 647 a~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~l 724 (1516)
T KOG1832|consen 647 AHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKL 724 (1516)
T ss_pred HHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHH
Confidence 210 011212221111 23789999999999999987765543332 11111111 12122333455
Q ss_pred hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChh-----hhHHHHHHHHHHhccCCHHHHHHHHh
Q 010080 314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-----VLKKEAAWVLSNIAAGSVEHKQLIHS 384 (518)
Q Consensus 314 ~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~-----~i~~~a~~~Lsnl~~~~~~~~~~li~ 384 (518)
...++-+.+.+.+++ ++..|+++|+...| .+|+-||.+|--|+... ...|.+-.
T Consensus 725 e~~l~~mw~~Vr~nd----------------GIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~-tVrQIltK 783 (1516)
T KOG1832|consen 725 EQVLRQMWEAVRGND----------------GIKILLKLLQYKNPPTTADCIRALACRVLLGLARDD-TVRQILTK 783 (1516)
T ss_pred HHHHHHHHHHHhcCc----------------cHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCc-HHHHHHHh
Confidence 677777777776663 78889999987654 79999999999998764 55665543
No 248
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=80.95 E-value=19 Score=32.39 Aligned_cols=72 Identities=8% Similarity=0.042 Sum_probs=56.6
Q ss_pred ChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080 210 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 288 (518)
Q Consensus 210 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 288 (518)
.++.++.+..+++..++..|+-.+..+.+..-- .-..++|+|+.+..++++.++..|...+..+....+...
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-------nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLV-------NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-------ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 466777777788999999999999887764211 123689999999999999999999999999987444333
No 249
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=80.89 E-value=40 Score=30.19 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=51.5
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
-.+|.++.=|...+.-.+--|...+..+... ..+.+-.++-. ++++|-..|.+.+++|...++.+|..++..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPq-LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQ-LIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 4778777777665554555555555555443 44555555543 888999999999999999999999999653
No 250
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.95 E-value=4.8 Score=38.76 Aligned_cols=142 Identities=16% Similarity=0.201 Sum_probs=94.6
Q ss_pred hHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccce
Q 010080 254 LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISD 333 (518)
Q Consensus 254 ~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~ 333 (518)
.+...+..|.+.|=+...+.+..+..|+....+....++ +.++-.+++-+ ++....|...||.+++-|.+.-+..++.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777778888888888888875444433332 23455556655 3556677788999999998765544433
Q ss_pred eeccCCCchhhhHHHHHHHh----ccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHH
Q 010080 334 VLVPGHGITDQVIAVLVKCL----KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYV 409 (518)
Q Consensus 334 ~i~~G~~~~~~~l~~L~~lL----~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~a 409 (518)
. +..++..| ...+..|+..|-.+|-.++..-..+ -+++.|+..+++..+.++..++.+
T Consensus 167 ~-----------ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~ 228 (334)
T KOG2933|consen 167 E-----------LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALC 228 (334)
T ss_pred H-----------HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhcc
Confidence 2 23333333 2235678999999998887653222 267788888999999999988888
Q ss_pred HHHhcC
Q 010080 410 LGNLCV 415 (518)
Q Consensus 410 L~nl~~ 415 (518)
..++..
T Consensus 229 ~~~~v~ 234 (334)
T KOG2933|consen 229 FSRCVI 234 (334)
T ss_pred ccccce
Confidence 777654
No 251
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=79.69 E-value=7.8 Score=33.30 Aligned_cols=70 Identities=10% Similarity=0.193 Sum_probs=53.8
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH-ENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~-~~~~i~~~a~~il~~~ 509 (518)
++..|..-|.++++.++..+|.+|+.+.+.|+. .+...+-.-..++.|..+... .+++|+++...+|..+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W 108 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK-RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 566777778889999999999999999988754 223334444566777777666 7889999999999875
No 252
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=79.18 E-value=29 Score=35.07 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhc-C-CCCHHHHHHHHHHHHhhhCCChh------------hHHHHH
Q 010080 142 QLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLG-E-KSSSPVAEQCAWALGNVAGEGEE------------FRNVLL 206 (518)
Q Consensus 142 ~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~-~-~~~~~v~~~a~~~L~nla~d~~~------------~r~~~~ 206 (518)
....|...+..++.........++ +.+..++.-.. + ..+..-++.|+..++.|+..+.. .-..+.
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff 306 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFF 306 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHH
Confidence 345688888888865444444443 33444333211 2 25678899999999999875522 123344
Q ss_pred hcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHH
Q 010080 207 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVV 277 (518)
Q Consensus 207 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L 277 (518)
...++|-|. --.+..+-++..|+|.+..+-..- ..+.+ .+++|.++++|.+++.-|...|+.|+
T Consensus 307 ~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l----~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 307 SQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL----PKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC----CHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 555555554 111335667888999998886432 23333 48999999999999998999888775
No 253
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.44 E-value=9.2 Score=32.80 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=53.3
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhc-CCCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF-HENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~-~~~~~i~~~a~~il~~~ 509 (518)
++.+|..-|.++++.++..+|..|+.+.+.|+. .....+-.-+.++.|..+.. ..++.|++++..++..+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 112 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT-HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAW 112 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHH
Confidence 566777778889999999999999999987743 23344445566777777654 67889999999998874
No 254
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.14 E-value=6.1 Score=38.04 Aligned_cols=138 Identities=12% Similarity=0.141 Sum_probs=86.0
Q ss_pred HhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhc
Q 010080 215 ARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS 294 (518)
Q Consensus 215 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 294 (518)
+..|.+.+......+.-.+..|+... +..-... ....+..+++-+++....|-..||-+++-|...-+..+...
T Consensus 94 l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~--L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~--- 167 (334)
T KOG2933|consen 94 LKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPM--LHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE--- 167 (334)
T ss_pred HHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHH--HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33444445555555555566665542 1111111 13556667777777778888999999998887544444442
Q ss_pred CchHHHHHHHc-c--CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHh
Q 010080 295 GVLQLLVERLA-T--SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNI 371 (518)
Q Consensus 295 g~~~~Lv~lL~-~--~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl 371 (518)
+..++..|. . ..+.-++..|-++|..++..-.. .-+++.|...+.+.++.++..++.+.+++
T Consensus 168 --ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 168 --LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred --HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 333333332 1 12333577888888887755422 24788888899999999999999888877
Q ss_pred cc
Q 010080 372 AA 373 (518)
Q Consensus 372 ~~ 373 (518)
.-
T Consensus 233 v~ 234 (334)
T KOG2933|consen 233 VI 234 (334)
T ss_pred ce
Confidence 54
No 255
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.76 E-value=12 Score=31.68 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=51.9
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcC---CCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH---ENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~---~~~~i~~~a~~il~~~ 509 (518)
++..|-.-|.++++.++..+|.+|..+++.|+. .+...+-.-..++.+..+... .+++|++++..++..+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~-~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGK-PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh-HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 566777778899999999999999999987754 233334444556667776653 5889999998888763
No 256
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.48 E-value=12 Score=34.37 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-----CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHH
Q 010080 183 VAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-----NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA 257 (518)
Q Consensus 183 v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~ 257 (518)
-...|+-.|..++. .|+.+..+++..+--.|-.++.. +-..++-.+...+..|..+++ +....++....++|.
T Consensus 116 RvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNds-q~vi~fLltTeivPL 193 (315)
T COG5209 116 RVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDS-QYVIKFLLTTEIVPL 193 (315)
T ss_pred HHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCC-HHHHHHHHhhhHHHH
Confidence 34566666777776 57777777777653344455541 235677888999999998764 333445556789999
Q ss_pred HHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh--------cCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080 258 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK--------SGVLQLLVERLATSNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 258 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--------~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~ 324 (518)
+++++..+++--..-+...+..+.. ++...+.++. ..++..++..+.+..+......++|+--.++
T Consensus 194 cLrIme~gSElSktvaifI~qkil~-dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILG-DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS 267 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence 9999998887667777777766664 4445555443 1234444444433445555556666555444
No 257
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=77.25 E-value=99 Score=32.38 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc-----CCCccchhhhhhhhhhhhcCCCcccceeeccCCCch
Q 010080 268 ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGIT 342 (518)
Q Consensus 268 ~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~ 342 (518)
+....+-.++.||+.... .+-.+..|..+|.. ..+..+..-|+..++.+..+...+...-+..+ .
T Consensus 230 ~l~~~~w~~m~nL~~S~~-------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~---~ 299 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHL-------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS---P 299 (464)
T ss_pred ccchhHHHHHHHHHcCcc-------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc---H
Confidence 334444445556664221 11235666777721 12334556788888888877744333333321 1
Q ss_pred hhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080 343 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 373 (518)
Q Consensus 343 ~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~ 373 (518)
.-+++.|...+..++..+-.+....+.++..
T Consensus 300 ~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 300 SSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 2378888889988888888888888888874
No 258
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=77.14 E-value=5.2 Score=37.18 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhc--C-------ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-hhHHHHHhcCCh
Q 010080 142 QLLEAAWCLTNIAAGKQEETKALL--P-------ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EFRNVLLSQGAL 211 (518)
Q Consensus 142 ~~~eA~~~L~nia~~~~~~~~~v~--~-------~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~~r~~~~~~g~i 211 (518)
.|+-|+.+|..++-... +.+.++ + .+..|+.+|....++-.+|-|+-.|.|+|..+. .+|....+.+.|
T Consensus 140 PqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 140 PQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 46779999999985432 344443 1 466777788777889999999999999997554 455777888999
Q ss_pred hHHHhhhCCCC
Q 010080 212 PPLARMMLPNK 222 (518)
Q Consensus 212 ~~L~~ll~~~~ 222 (518)
..|+.++....
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999997543
No 259
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=77.10 E-value=70 Score=30.58 Aligned_cols=217 Identities=18% Similarity=0.204 Sum_probs=120.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCC--CCcHHHHH-----------H-cCCHHHHHHHhcCCCChHHHHHHH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFE--FPPIETAL-----------K-AGAIPVLVQCLAFGSPDEQLLEAA 147 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~--~~~~~~~i-----------~-~g~ip~Lv~~L~~~~~~~~~~eA~ 147 (518)
+--+++++ +..+.+-++|+..+.+++++-+ .+.....+ . .|+.+.++.=|.+....+. +.
T Consensus 10 W~~vAcL~---S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~---tl 83 (262)
T PF14225_consen 10 WTAVACLE---SIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYEL---TL 83 (262)
T ss_pred HHHHHhhc---CCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHH---HH
Confidence 33444443 5666677777777777766532 11111111 0 3444445554554443322 44
Q ss_pred HHHHHHhc-------CCh--HHHHHhcCChHHHHHhhcCCC---CHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHH
Q 010080 148 WCLTNIAA-------GKQ--EETKALLPALPLLIAHLGEKS---SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA 215 (518)
Q Consensus 148 ~~L~nia~-------~~~--~~~~~v~~~v~~Lv~lL~~~~---~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~ 215 (518)
..|..++. |.+ .....++..+|.++.-+.++. .......++..|+.+|... ..+.+..++
T Consensus 84 ~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--------~~~~La~il 155 (262)
T PF14225_consen 84 RLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--------GLPNLARIL 155 (262)
T ss_pred HHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--------CCccHHHHH
Confidence 44444442 112 222233368999999888733 1245566777888777421 112233333
Q ss_pred hhhC-C---CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHH
Q 010080 216 RMML-P---NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLL 291 (518)
Q Consensus 216 ~ll~-~---~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~ 291 (518)
.... . +..+..+.++..|+.-+ -|+. ....+-.|+.+|.++-+.++..++..|..+...-+-...
T Consensus 156 ~~ya~~~fr~~~dfl~~v~~~l~~~f---~P~~------~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-- 224 (262)
T PF14225_consen 156 SSYAKGRFRDKDDFLSQVVSYLREAF---FPDH------EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-- 224 (262)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHh---Cchh------HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--
Confidence 2222 1 23455666665555433 1221 246677899999999899999999999988865332222
Q ss_pred HhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCC
Q 010080 292 VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD 327 (518)
Q Consensus 292 ~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~ 327 (518)
...+++..+.++|. . +.-..|+.++-++.+..
T Consensus 225 ~~~dlispllrlL~-t---~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 225 HGADLISPLLRLLQ-T---DLWMEALEVLDEIVTRS 256 (262)
T ss_pred cchHHHHHHHHHhC-C---ccHHHHHHHHHHHHhhc
Confidence 44567888888884 2 34567787777776543
No 260
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=76.68 E-value=14 Score=34.39 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=64.4
Q ss_pred chhhhhhhhhhhhcCCCcccceeeccCCC-chhhhHHHHHHHhcc-ChhhhHHHHHHHHHHhccCCHHHHHHH-HhCCCH
Q 010080 312 LLIPVLRSLGNLVAGDSSTISDVLVPGHG-ITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLI-HSSEAL 388 (518)
Q Consensus 312 v~~~al~~L~nl~~~~~~~~~~~i~~G~~-~~~~~l~~L~~lL~~-~~~~i~~~a~~~Lsnl~~~~~~~~~~l-i~~~~i 388 (518)
-+.-|+-+|+.++-.+ ...+.++..|.. +-..++..|.+++.. +++..|+.|.-.|+|++.++......+ .+.+.+
T Consensus 140 PqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 140 PQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 3456888999988554 445666665532 334677778888854 567899999999999999887666444 466889
Q ss_pred HHHHHHhcCCChh
Q 010080 389 ALLLHLLSTSPFD 401 (518)
Q Consensus 389 ~~Li~lL~~~~~~ 401 (518)
..|+..+...+..
T Consensus 219 ~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 219 SHLIAFIEDAEQN 231 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998776543
No 261
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=76.07 E-value=92 Score=31.40 Aligned_cols=203 Identities=18% Similarity=0.183 Sum_probs=106.8
Q ss_pred hHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhh
Q 010080 212 PPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATS 289 (518)
Q Consensus 212 ~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~ 289 (518)
..++.=|. .....+++.++-.|..-|.. +. .+..+...|....+++.+. .++..+...+..++.++...+.....
T Consensus 24 ~ylld~l~~~~~~s~Rr~sll~La~K~~~--~~-Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 24 EYLLDGLESSSSSSVRRSSLLELASKCAD--PQ-FRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHhhcccCCCccHHHHHHHHHHHHhCC--HH-HHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence 34444444 23567888888777777754 23 3334556788888888885 33333666666666666654333333
Q ss_pred HHHhcCchHHHHHHHc-----------------------------------c--------CCCccchhhhhhhhhhhhcC
Q 010080 290 LLVKSGVLQLLVERLA-----------------------------------T--------SNSLQLLIPVLRSLGNLVAG 326 (518)
Q Consensus 290 ~~~~~g~~~~Lv~lL~-----------------------------------~--------~~~~~v~~~al~~L~nl~~~ 326 (518)
.+.+.+....++.++. . +.....+..++.++-.++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~ 180 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRS 180 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHH
Confidence 3223333333333332 0 11223345566666666411
Q ss_pred CC---cccceeeccCCC-----chhhhHHHHHHHhc----cC-------h-----hhhHHHHHHHHHHhccCCHHHHHHH
Q 010080 327 DS---STISDVLVPGHG-----ITDQVIAVLVKCLK----SE-------H-----RVLKKEAAWVLSNIAAGSVEHKQLI 382 (518)
Q Consensus 327 ~~---~~~~~~i~~G~~-----~~~~~l~~L~~lL~----~~-------~-----~~i~~~a~~~Lsnl~~~~~~~~~~l 382 (518)
.- +....+-..|.+ +..|++..++.++. .. . ...-..+.++|-|.+..+.++-..+
T Consensus 181 ~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l 260 (361)
T PF07814_consen 181 LREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYL 260 (361)
T ss_pred HhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 10 011111111211 24567888888875 11 1 1244557888889887766655555
Q ss_pred HhC--CCHHHHHHHh-cC---CChhHHHHHHHHHHHhcCCC
Q 010080 383 HSS--EALALLLHLL-ST---SPFDIKKEVAYVLGNLCVSP 417 (518)
Q Consensus 383 i~~--~~i~~Li~lL-~~---~~~~v~~eA~~aL~nl~~~~ 417 (518)
+.. +.++.+...+ .. ...++...++..+.|++.+.
T Consensus 261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n 301 (361)
T PF07814_consen 261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN 301 (361)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence 543 3343333332 22 23344567889999998863
No 262
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=75.97 E-value=29 Score=33.21 Aligned_cols=152 Identities=21% Similarity=0.111 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHhcC----ChHHHHHhhcC---CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcC--ChhH
Q 010080 143 LLEAAWCLTNIAAGKQEETKALLP----ALPLLIAHLGE---KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG--ALPP 213 (518)
Q Consensus 143 ~~eA~~~L~nia~~~~~~~~~v~~----~v~~Lv~lL~~---~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g--~i~~ 213 (518)
.+=++-.+.-++...+ ....... ....+..++.. ...+..+--++++++|+-. ++..|..++.+. .+..
T Consensus 80 ~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~~~i~~ 157 (268)
T PF08324_consen 80 RFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFS-HPPGRQLLLSHFDSSILE 157 (268)
T ss_dssp -HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTT-SCCCHHHHHCTHHTCHHH
T ss_pred chhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhC-CCccHHHHHhcccchHHH
Confidence 4556666665554322 2222221 12333333322 2467888999999999887 667777777654 3444
Q ss_pred HHhhhCCC----ChhHHHHHHHHHHHhhcC--CCCCchhhHHHhhchHHHHHHHhc--cCChhHHHHHHHHHHHhhcCCc
Q 010080 214 LARMMLPN----KGSTVRTAAWALSNLIKG--PDPKPATELIKVDGLLDAILRHLK--RADEELTTEVAWVVVYLSALSN 285 (518)
Q Consensus 214 L~~ll~~~----~~~~~~~a~~~L~nL~~~--~~~~~~~~~i~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~ 285 (518)
.+..+... +..++..++..+.|++-. ..+. ..+. ....+..+...+. ..|+|+...++-+|++|...++
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~-~~~~--~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~ 234 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS-DEEW--QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSD 234 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS--CCH--HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC-ChHH--HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCh
Confidence 44433333 678888889999998742 1110 1111 1245666666433 3689999999999999997554
Q ss_pred hhhhHHHhcCchHH
Q 010080 286 VATSLLVKSGVLQL 299 (518)
Q Consensus 286 ~~~~~~~~~g~~~~ 299 (518)
...+.....|+-..
T Consensus 235 ~~~~~~~~l~~~~~ 248 (268)
T PF08324_consen 235 SAKQLAKSLDVKSV 248 (268)
T ss_dssp HHHHHCCCCTHHHH
T ss_pred hHHHHHHHcChHHH
Confidence 44443333344333
No 263
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=75.19 E-value=23 Score=34.27 Aligned_cols=123 Identities=11% Similarity=0.158 Sum_probs=76.5
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHH-HHHHhCCCHHHHHHHh----c--------CCChhHHHHHHHHH
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHK-QLIHSSEALALLLHLL----S--------TSPFDIKKEVAYVL 410 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~-~~li~~~~i~~Li~lL----~--------~~~~~v~~eA~~aL 410 (518)
=++|.++.++.+.++.+|..+|.++..+....+... ..+.+.|+.+.+.+.+ . ..+..+-..|.-|+
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 479999999999999999999999999987543222 2356677665555544 2 23455666777777
Q ss_pred HHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080 411 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 411 ~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~ 468 (518)
..++......++.+. ......++..|++..+.-.-..+.+++....++.+..++..
T Consensus 199 ~~L~~~~~~~~~~~r--~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 199 LSLLKTQENDDSNPR--STWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred HHHHHhhccCCcccc--hHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 776442100111111 23445566666666555444344577777777777666643
No 264
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=74.53 E-value=28 Score=30.66 Aligned_cols=109 Identities=24% Similarity=0.240 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH--cCCHHHHHHHhcCCCChHHHHHHHHHHHHHh--
Q 010080 79 SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALK--AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIA-- 154 (518)
Q Consensus 79 ~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~--~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia-- 154 (518)
..+..+.+++ ++.+.+.+..++.-++..+.... + +.+.+ ...+..++..|+.+++......|..+|+.|.
T Consensus 25 ~l~~ri~~LL---~s~~~~~rw~G~~Ll~~~~~~~~-~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 25 KLVTRINSLL---QSKSAYSRWAGLCLLKVTVEQCS-W--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHh---CCCChhhHHHHHHHHHHHHHHhh-H--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3444555555 58889999999998888665432 2 33444 3467788889988776655444677777665
Q ss_pred -cCChHHHHHhc-CChHH----HHHhhcCCCCHHHHHHHHHHHHhhhC
Q 010080 155 -AGKQEETKALL-PALPL----LIAHLGEKSSSPVAEQCAWALGNVAG 196 (518)
Q Consensus 155 -~~~~~~~~~v~-~~v~~----Lv~lL~~~~~~~v~~~a~~~L~nla~ 196 (518)
.+.++....+. +.+|. ++.+++. ..+.+.++.+|..+..
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLP 143 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHH
Confidence 55566555544 44444 4444432 4566677777776654
No 265
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=74.28 E-value=76 Score=30.42 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCCCCc-----hhH-HHHHHHHHhcCchHHHHHhhccC-CHHHHHHHHHHHHHHHccC
Q 010080 399 PFDIKKEVAYVLGNLCVSPTEGEGKP-----KLI-QEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 399 ~~~v~~eA~~aL~nl~~~~~~~~~~~-----~~~-~~~~~~l~~~g~i~~L~~lL~~~-d~~~~~~~l~~l~~il~~~ 469 (518)
+..+.+-....+.|+..-++...+.. ... ..-+..|.+.|+...|+.+..+. ..+.....++.+..|++..
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 45577778888899877643221110 000 12345666889999999999886 3445558899999999764
No 266
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=74.08 E-value=4 Score=26.33 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=24.4
Q ss_pred ccccccccccCchHHhhhHHHHHHHhhHhhHHHHHHhh
Q 010080 9 HKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKR 46 (518)
Q Consensus 9 ~r~~~~k~~~~~~~~~rr~~~~~~~rk~~r~~~l~~kR 46 (518)
.|...||+.+...+-.+||+...+.=|++|-+.++.-|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR~~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERRREFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHHHHHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHHHHHHHHHHHHhHHHHHhcc
Confidence 36678998766555556666666677777766665444
No 267
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=73.79 E-value=79 Score=29.60 Aligned_cols=139 Identities=17% Similarity=0.106 Sum_probs=86.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH
Q 010080 127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL 206 (518)
Q Consensus 127 ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~ 206 (518)
+|.|+.-+....++..+...+.+|..++......... .+..+..+... ++.+...-+...+..+-..++.. +
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~---v~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~--f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP---VLQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRH--F-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH---HHHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchH--H--
Confidence 5666665666666777788899999999765222222 23344444444 55566566666666665533221 1
Q ss_pred hcCChhHHHhhh--C--------CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCChhHHHHHHH
Q 010080 207 SQGALPPLARMM--L--------PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAW 275 (518)
Q Consensus 207 ~~g~i~~L~~ll--~--------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~d~~v~~~a~~ 275 (518)
+.+.+++..+ + ....+......+++..+|... |. .....++.+..+| .+.++.+...++-
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p~------~g~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-PD------HGVDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-hh------hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3344444441 1 113455566678899999764 22 1347788888889 6888888999999
Q ss_pred HHHHhhc
Q 010080 276 VVVYLSA 282 (518)
Q Consensus 276 ~L~~L~~ 282 (518)
+|..|+.
T Consensus 145 ~l~~Lc~ 151 (234)
T PF12530_consen 145 ALAPLCE 151 (234)
T ss_pred HHHHHHH
Confidence 9999994
No 268
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=73.12 E-value=16 Score=31.13 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=51.3
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhc------CCCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF------HENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~------~~~~~i~~~a~~il~~~ 509 (518)
++.++..-|.++++.++..+|.+|+.+.+.|+. .+...+-.-+.++.+..+.. ..+++|+++...++..+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE-RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 566777778899999999999999999987753 23333444455666666653 25789999999888764
No 269
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.42 E-value=1.6e+02 Score=32.62 Aligned_cols=291 Identities=11% Similarity=0.096 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHhcC-ChHHHHHhhcCC--CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHh---
Q 010080 143 LLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEK--SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLAR--- 216 (518)
Q Consensus 143 ~~eA~~~L~nia~~~~~~~~~v~~-~v~~Lv~lL~~~--~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~--- 216 (518)
.+-|+-.+..++.....+...+++ -+..++.-...+ .+..-++.+++....++......+.-+....-+-.+..
T Consensus 379 RR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~ 458 (960)
T KOG1992|consen 379 RRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFA 458 (960)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHH
Confidence 344666666676555444444543 455555533332 24455677777777776544332222211111111111
Q ss_pred -----hhCCC----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchh
Q 010080 217 -----MMLPN----KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVA 287 (518)
Q Consensus 217 -----ll~~~----~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~ 287 (518)
-|.++ .+-++..+..- ...-|+ +...+. ...++|.+.++|..+..-+...|+.++-.+..-....
T Consensus 459 ~~ilp~L~s~~vn~~pilka~aIKy-~~~FR~---ql~~~~--lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~ 532 (960)
T KOG1992|consen 459 NQILPDLLSPNVNEFPILKADAIKY-IYTFRN---QLGKEH--LMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENS 532 (960)
T ss_pred HHhhHHhccCccccccchhhcccce-eeeecc---cCChHH--HHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCc
Confidence 11121 12222222211 112222 122222 2378999999999999999999999998776432221
Q ss_pred hhHHHhcC-ch----HHHHHHHc--cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc----c-
Q 010080 288 TSLLVKSG-VL----QLLVERLA--TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK----S- 355 (518)
Q Consensus 288 ~~~~~~~g-~~----~~Lv~lL~--~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~----~- 355 (518)
...+...+ +. ..+..++. +.+...--....+++-.+..-.++.+.... ...++.|.+++. +
T Consensus 533 ~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~-------~~~l~~Lteiv~~v~KNP 605 (960)
T KOG1992|consen 533 NAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHA-------PELLRQLTEIVEEVSKNP 605 (960)
T ss_pred cccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhh-------hHHHHHHHHHHHHHhcCC
Confidence 11122222 11 12222221 111111112223333333222222222222 124555555552 1
Q ss_pred Chh---hhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHH
Q 010080 356 EHR---VLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHL 431 (518)
Q Consensus 356 ~~~---~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~ 431 (518)
++| ..--|+..++-+.+.. ++..+..+ +..++|.+-.+|...-.+.---+...++-+...+. +.-|..+..-.
T Consensus 606 s~P~fnHYLFEsi~~li~~t~~~~~~~vs~~-e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~--~~ip~~~~~l~ 682 (960)
T KOG1992|consen 606 SNPQFNHYLFESIGLLIRKTCKANPSAVSSL-EEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSS--GTIPDSYSPLF 682 (960)
T ss_pred CCchhHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCchhHHHHH
Confidence 122 3445555555555543 43434333 33477777777766544444444445554444321 11232222222
Q ss_pred H-----HHH-hcCchHHHHHhhcc
Q 010080 432 V-----SLV-GRGCLSGFIDLVRS 449 (518)
Q Consensus 432 ~-----~l~-~~g~i~~L~~lL~~ 449 (518)
. .++ ..|-+|+++.+|..
T Consensus 683 ~~lLsp~lW~r~gNipalvrLl~a 706 (960)
T KOG1992|consen 683 PPLLSPNLWKRSGNIPALVRLLQA 706 (960)
T ss_pred HHhcCHHHHhhcCCcHHHHHHHHH
Confidence 2 233 35889998888774
No 270
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=72.19 E-value=61 Score=30.65 Aligned_cols=162 Identities=14% Similarity=0.189 Sum_probs=87.3
Q ss_pred hchHHHHHHHhccC--C-hhHH-----HHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhh
Q 010080 252 DGLLDAILRHLKRA--D-EELT-----TEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 323 (518)
Q Consensus 252 ~~~l~~L~~lL~~~--d-~~v~-----~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl 323 (518)
..++|.|..+|... + .++. .--.|++.-|+. +.+...++.+++++...++ ..-..+|-.
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq--------~re~~A~~~li~l~~~~~~-----~~~~l~GD~ 96 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQ--------FREERALPPLIRLFSQDDD-----FLEDLFGDF 96 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHH--------HhhhhhHHHHHHHHcCCcc-----hHHHHHcch
Confidence 35678888887631 1 1221 112455555553 2345678889998853222 111122221
Q ss_pred hcCCCcccceeeccCCCchhhhHHHHHHHhccCh--hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH-hcCCCh
Q 010080 324 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH--RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL-LSTSPF 400 (518)
Q Consensus 324 ~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~--~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l-L~~~~~ 400 (518)
++.+-..+-..+ -.|-+..|..++.+++ ..+|..|+.++..++...+..+..+++ .+..+++. +...+.
T Consensus 97 ~tE~l~~ilasv------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~~l~~~~~ 168 (249)
T PF06685_consen 97 ITEDLPRILASV------GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNYFLERNPS 168 (249)
T ss_pred hHhHHHHHHHHH------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHHHhccCch
Confidence 111100000001 1245677788887764 578999999999999877776777766 34444444 433332
Q ss_pred hHHHHHHHH-HHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHH
Q 010080 401 DIKKEVAYV-LGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFI 444 (518)
Q Consensus 401 ~v~~eA~~a-L~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~ 444 (518)
. +.+. +++++.- .|++....++.+.+.|+++..+
T Consensus 169 ~----~~~~Lv~~~~dL------~~~EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 169 F----LWGSLVADICDL------YPEELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred H----HHHHHHHHHHhc------CHHHhHHHHHHHHHcCCCCccc
Confidence 2 2222 2333321 2444456778888889887755
No 271
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=70.57 E-value=62 Score=27.24 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=57.7
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccCCHH-HHHHHHhCCCHHHHHHHhcC---CChhHHHHHHHHHHHhcC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE-HKQLIHSSEALALLLHLLST---SPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~-~~~~li~~~~i~~Li~lL~~---~~~~v~~eA~~aL~nl~~ 415 (518)
.++..|..-|.++++.++..|+.+|--+...+.. ....+....++..|+.++.. .+..|++.+...|.+-..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999988876544 44555565788889999964 477899999888877754
No 272
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=70.38 E-value=57 Score=32.48 Aligned_cols=212 Identities=17% Similarity=0.110 Sum_probs=104.2
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
++..|..++....++......+.+|+.=+... ..-+...++..+.+-+++..+.+++.-..++...+....+....
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 34455555555456666666666666433211 01112223444555556666778888887777777511111112
Q ss_pred hHHHhhchHHHHHHHhc----cCChhHH---HHHHHHHHHhhcCCchhhhH-------HH-hcC----chHHHHHHHccC
Q 010080 247 ELIKVDGLLDAILRHLK----RADEELT---TEVAWVVVYLSALSNVATSL-------LV-KSG----VLQLLVERLATS 307 (518)
Q Consensus 247 ~~i~~~~~l~~L~~lL~----~~d~~v~---~~a~~~L~~L~~~~~~~~~~-------~~-~~g----~~~~Lv~lL~~~ 307 (518)
.+ ...++|.|...+. ++-+... ..++.++.-+.....+.++. +. +.. .-+++...+
T Consensus 99 ~~--~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--- 173 (339)
T PF12074_consen 99 KF--AEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--- 173 (339)
T ss_pred HH--HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc---
Confidence 22 3478888888875 2211111 11222222222211111111 00 000 001111111
Q ss_pred CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC--hhhhHHHHHHHHHHhccCCHHHHHHHHhC
Q 010080 308 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVEHKQLIHSS 385 (518)
Q Consensus 308 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~--~~~i~~~a~~~Lsnl~~~~~~~~~~li~~ 385 (518)
.+.+-..-.++++..+..+.+.....-.. ...-..++.++.++ .+.+|+.|.-++..+.+.+++. +..
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~------~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~ 243 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKS------SAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSK 243 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHH------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHH
Confidence 23333445666666666554332211100 13566778888887 7899999999999999887764 233
Q ss_pred CCHHHHHHHhcC
Q 010080 386 EALALLLHLLST 397 (518)
Q Consensus 386 ~~i~~Li~lL~~ 397 (518)
.++..+-+.|..
T Consensus 244 ~li~~l~~~l~~ 255 (339)
T PF12074_consen 244 SLISGLWKWLSS 255 (339)
T ss_pred HHHHHHHHHHHh
Confidence 344555555544
No 273
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=70.24 E-value=56 Score=29.30 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=67.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhc----C---------------ChhHHHhhhCCC-ChhHHHH
Q 010080 169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ----G---------------ALPPLARMMLPN-KGSTVRT 228 (518)
Q Consensus 169 ~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~----g---------------~i~~L~~ll~~~-~~~~~~~ 228 (518)
+.|+..+-..+++.+|..|+.+|..+-..+..+-...-+. + .-..|+..|+.+ +..+...
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3444444334788888888888888866543322222211 1 122344444444 6788889
Q ss_pred HHHHHHHhhcCCCCCc--hhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 229 AAWALSNLIKGPDPKP--ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 229 a~~~L~nL~~~~~~~~--~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
...++..|..+. |-. ..++ ...++..+..++.+.|.+++..++-++.-+..
T Consensus 122 ~lK~la~Lv~~t-PY~rL~~~l--l~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 122 LLKCLAVLVQAT-PYHRLPPGL--LTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHccC-ChhhcCHhH--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 999999999763 211 1111 12344445556678999999999999888875
No 274
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.84 E-value=1.6e+02 Score=31.42 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=73.8
Q ss_pred hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcc
Q 010080 251 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST 330 (518)
Q Consensus 251 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~ 330 (518)
+.|.+..+++.+.+.|..|+..+|..|+-+++.- .-++..+-.|++..|.+.+- ...+.|+..|+.+|+.+-....+.
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v-~eIDe~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVV-REIDEVLANGLLEKLSERLF-DREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhccCCh
Confidence 3588888999999999999999999999998732 33556666788888888774 567788999999999875332221
Q ss_pred cceeeccCCCchhhhHHHHHHHhc-cChhhhHHHHHHHH
Q 010080 331 ISDVLVPGHGITDQVIAVLVKCLK-SEHRVLKKEAAWVL 368 (518)
Q Consensus 331 ~~~~i~~G~~~~~~~l~~L~~lL~-~~~~~i~~~a~~~L 368 (518)
. ..+...|+.+++ .++..||+.|+.-|
T Consensus 167 e-----------n~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 167 E-----------NRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred H-----------HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 1 123445555554 44567887765433
No 275
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=69.58 E-value=98 Score=31.79 Aligned_cols=226 Identities=12% Similarity=0.104 Sum_probs=118.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-----
Q 010080 84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ----- 158 (518)
Q Consensus 84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~----- 158 (518)
+.+++....|.|+.++-.....++++..+.. .....+...+...|.+++.......-..+.+..++.+..|..
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~--~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGKFP--NLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-T--TTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 4556666789999999988888888777643 346678888899999999865544455788999999988743
Q ss_pred HHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080 159 EETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 238 (518)
Q Consensus 159 ~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 238 (518)
++...+.. .++-|.....-.....+-..++.-+...++..-..+ +..|++.--..+..=......-+..++.
T Consensus 213 eh~~fl~~---vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~il~ 284 (409)
T PF01603_consen 213 EHKQFLRK---VLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEILE 284 (409)
T ss_dssp HHHHHHHH---TTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH---HHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHHHH
Confidence 23322222 222223221122233444455555544344432222 2223333222333333334444455554
Q ss_pred CCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhc---CchHHHHHHHcc----CCCcc
Q 010080 239 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS---GVLQLLVERLAT----SNSLQ 311 (518)
Q Consensus 239 ~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~---g~~~~Lv~lL~~----~~~~~ 311 (518)
.-.+. ...-+ ...+...+...+.+..-.|...|+..+ +++.+-.++.. .++|.+...|.. |=+..
T Consensus 285 ~~~~~-~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w------~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~ 356 (409)
T PF01603_consen 285 VLPPE-EFQKI-MVPLFKRLAKCISSPHFQVAERALYFW------NNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQT 356 (409)
T ss_dssp T--HH-HHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGG------GSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTT
T ss_pred hcCHH-HHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHH------CCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHH
Confidence 32221 11111 235666677777788878777765443 12222223322 355666665532 22445
Q ss_pred chhhhhhhhhhhhcCC
Q 010080 312 LLIPVLRSLGNLVAGD 327 (518)
Q Consensus 312 v~~~al~~L~nl~~~~ 327 (518)
++..+..++.-+...+
T Consensus 357 Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 357 VRNLAQNVLKILMEMD 372 (409)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6666666666555443
No 276
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=69.24 E-value=19 Score=38.96 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=49.6
Q ss_pred hHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 345 ~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
++.+|..+-...-..++..+.-++.++..+.|++-+. ++-.|++-|.+++.++-..|.+.|.+|..
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 5555555555556688999999999998888877543 45678888888888888888888777744
No 277
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=69.10 E-value=21 Score=29.12 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=47.5
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHH-----h-cCCCHHHHHHHHHHHHhhc
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-----Q-FHENEDLRNMANGLVDKYF 510 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L-----~-~~~~~~i~~~a~~il~~~f 510 (518)
++..|..-|.++++.++..+|.+|..+++.|+. .+...+-....+..+..+ . ...+..|++++..+++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~-~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGE-RFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH-HHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 566677777888999999999999999988753 222223232233333221 1 2347899999999988654
No 278
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=68.31 E-value=1.2e+02 Score=31.99 Aligned_cols=149 Identities=19% Similarity=0.174 Sum_probs=83.5
Q ss_pred HHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCC-------CChHHHHH
Q 010080 73 LEMQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-------SPDEQLLE 145 (518)
Q Consensus 73 ~~~~~~~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~-------~~~~~~~e 145 (518)
+..++...++++.+.+. ++|+..+-+|+..|+. ++-++. .+|.|+.++... ++-.+...
T Consensus 201 LS~ElQlYy~~It~a~~---g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~ 266 (576)
T KOG2549|consen 201 LSVELQLYYKEITEACT---GSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIY 266 (576)
T ss_pred ccHHHHHHHHHHHHHHh---cCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHH
Confidence 34455667788888775 5788888999987765 444433 479999999632 11223334
Q ss_pred HHHHHHHHhcCChHHHHHhc-CChHHHHHhhcC---------CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHH
Q 010080 146 AAWCLTNIAAGKQEETKALL-PALPLLIAHLGE---------KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA 215 (518)
Q Consensus 146 A~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~---------~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~ 215 (518)
.+.....+..+..-..+..+ ..+|.++.++-+ ..+..+|.-|+..+..|+.+....-+- +...++..+.
T Consensus 267 lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~ 345 (576)
T KOG2549|consen 267 LMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLS 345 (576)
T ss_pred HHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHH
Confidence 55555555554433333333 578888777643 124557777777777777643322221 3344445555
Q ss_pred hhhCCC--ChhHHHHHHHHHHHh
Q 010080 216 RMMLPN--KGSTVRTAAWALSNL 236 (518)
Q Consensus 216 ~ll~~~--~~~~~~~a~~~L~nL 236 (518)
+.+... ......-++-.|+.|
T Consensus 346 k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 346 KALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHhcCCCCCchhhhhHHHHHHHh
Confidence 444332 233334444444444
No 279
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=68.26 E-value=76 Score=27.13 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=59.2
Q ss_pred hhhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcC
Q 010080 343 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 343 ~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~ 415 (518)
..++..|..-|.++++.++..|.-+|--+... +......+.+.+++..|+.++. ..+..|++.++..|.+-+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999888888765 4556666778889999999996 5677899998888877654
No 280
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=68.10 E-value=20 Score=32.37 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=52.5
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 512 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~ 512 (518)
.++.++++.-+++..+...+++.+..+++.|--+|. ..++.|..|.-++++.++.+|..++...++.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-------QCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 356677777789999999999999999987643331 1357788889999999999998888776654
No 281
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.60 E-value=2e+02 Score=31.82 Aligned_cols=317 Identities=15% Similarity=0.064 Sum_probs=150.3
Q ss_pred HHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC-ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC
Q 010080 119 ETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGE 197 (518)
Q Consensus 119 ~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d 197 (518)
+.-.....+|-+- ...++..-..+..+|.++...+- .+...+.. .-..++++|...++.-|+-.++.++.-...|
T Consensus 482 ~~Wl~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD 557 (978)
T KOG1993|consen 482 DKWLQEALLPELA--NDHGNSRIIRRRVAWILGQWVSV--QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDD 557 (978)
T ss_pred HHHHHHhhCHHhh--hcccchhHHHHHHHHHHhhhhhe--echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhh
Confidence 3344445555554 22233344556799999998862 22222222 4556788888766778888999998877765
Q ss_pred ChhhHHHHHh--cCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHH
Q 010080 198 GEEFRNVLLS--QGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVA 274 (518)
Q Consensus 198 ~~~~r~~~~~--~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~ 274 (518)
-.-..+.+.. ......+.+++.. +..+.+-....+++.+...-++....-.......+|.|.+-- .+.+-++...+
T Consensus 558 ~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL 636 (978)
T KOG1993|consen 558 WNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALL 636 (978)
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHH
Confidence 4322222221 1223334444442 234455566666666654321111110101112222222211 12234556667
Q ss_pred HHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccc---hhhh----hhhhhhhhcCCCcccceeeccCCCchhhhHH
Q 010080 275 WVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQL---LIPV----LRSLGNLVAGDSSTISDVLVPGHGITDQVIA 347 (518)
Q Consensus 275 ~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v---~~~a----l~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~ 347 (518)
.+|.++..+-...-..+ ...+=.++++-.+-++++- .+.+ +.+|+|.- ..+..++ +++|
T Consensus 637 ~~L~~lV~alg~qS~~~--~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~----~l~p~ll--------~L~p 702 (978)
T KOG1993|consen 637 ATLRNLVNALGAQSFEF--YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ----KLTPELL--------LLFP 702 (978)
T ss_pred HHHHHHHHHhccCCccc--hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhccc----ccCHHHH--------HHHH
Confidence 77777775211000000 1112223333222122221 1122 23445542 2222333 4788
Q ss_pred HHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhH
Q 010080 348 VLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI 427 (518)
Q Consensus 348 ~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~ 427 (518)
.+..++..+...++..-.-+=|.+.-.++...+. -..|+...+..++.+-..+-....+.++.++...
T Consensus 703 ~l~~~iE~ste~L~t~l~Ii~sYilLd~~~fl~~-y~~~i~k~~~~~l~dvr~egl~avLkiveili~t----------- 770 (978)
T KOG1993|consen 703 HLLYIIEQSTENLPTVLMIISSYILLDNTVFLND-YAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT----------- 770 (978)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh-----------
Confidence 8888886655544433222223333334332211 1236777788887654444444555555555431
Q ss_pred HHHHHHHHhcCchHHHHHhh--ccCCHHHHHHHHHHHHHHH
Q 010080 428 QEHLVSLVGRGCLSGFIDLV--RSADIEAARLGLQFMELVL 466 (518)
Q Consensus 428 ~~~~~~l~~~g~i~~L~~lL--~~~d~~~~~~~l~~l~~il 466 (518)
......+...++++.+..-+ +.+.|.+....|..+..++
T Consensus 771 ~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~ 811 (978)
T KOG1993|consen 771 NPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARIS 811 (978)
T ss_pred hHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 12345556667777766633 2344666666666665554
No 282
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=66.43 E-value=79 Score=34.81 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=92.8
Q ss_pred hHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccce
Q 010080 254 LLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISD 333 (518)
Q Consensus 254 ~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~ 333 (518)
-|.-|+.+|.+.|..+..++-..+..+.....+ .-++..||++....++ ..++.+|..+= . ..
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~l~~y~~~t~s----~~~~~il~~~~--~-P~--- 67 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDRE-------PWLVNGLVDYYLSTNS----QRALEILVGVQ--E-PH--- 67 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccch-------HHHHHHHHHHHhhcCc----HHHHHHHHhcC--C-cc---
Confidence 345677888888888888887777666643221 1235667776643333 34445555431 1 11
Q ss_pred eeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC-CChhHHHHHHHHHHH
Q 010080 334 VLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGN 412 (518)
Q Consensus 334 ~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~-~~~~v~~eA~~aL~n 412 (518)
...++..|-..+.. +..|..++..|+.++...+.+.-.|.+..+++.|+..|+. .+.-+-..|+.+|.-
T Consensus 68 --------~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Lim 137 (668)
T PF04388_consen 68 --------DKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIM 137 (668)
T ss_pred --------HHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 12466777777764 4678889999999999988999999999999999999965 556677778888877
Q ss_pred hcCC
Q 010080 413 LCVS 416 (518)
Q Consensus 413 l~~~ 416 (518)
+.-.
T Consensus 138 lLP~ 141 (668)
T PF04388_consen 138 LLPH 141 (668)
T ss_pred Hhcc
Confidence 7543
No 283
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=66.24 E-value=21 Score=30.22 Aligned_cols=70 Identities=7% Similarity=0.107 Sum_probs=51.6
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC-C-HHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE-N-EDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~-~-~~i~~~a~~il~~~ 509 (518)
++..|..-|.++++.++..+|.+|+.+++.|+. .+...+-..+.++.|..+.... + +.|++++..++..+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~-~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGS-KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 466677778889999999999999999987753 2344455666777787775553 3 34999998888764
No 284
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=65.82 E-value=85 Score=26.77 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=64.7
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcC------CChhHHHHHHHHHHHhcCC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLST------SPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~------~~~~v~~eA~~aL~nl~~~ 416 (518)
.++..|..-|.+.++.++..|+-+|-.+... +......+...+++..|+.++.. .+..|+..++..|-.-+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4788888889999999999999988888764 44555667778899999999953 4678998888777655432
Q ss_pred CCCCCCCchhHHHHHHHHHhcCch
Q 010080 417 PTEGEGKPKLIQEHLVSLVGRGCL 440 (518)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~g~i 440 (518)
.. ..|. +.+-...|...|+|
T Consensus 118 f~---~~p~-~~~~Y~~Lk~~G~i 137 (139)
T cd03567 118 LP---HEPK-IKEAYDMLKKQGII 137 (139)
T ss_pred hc---ccch-HHHHHHHHHHCCCc
Confidence 11 1232 23444555566655
No 285
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=65.60 E-value=1.2e+02 Score=28.40 Aligned_cols=190 Identities=15% Similarity=0.072 Sum_probs=103.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHH
Q 010080 92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLL 171 (518)
Q Consensus 92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~L 171 (518)
+..+++.+...+..|-.+.+.. +..... ++..|..+.+.+. .....-+...++.+-..++..- +.+..+
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~-~~~~~~-----v~~~L~~L~~~~~-~~~~~~~~rLl~~lw~~~~r~f----~~L~~~ 79 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHK-NVCVPP-----VLQTLVSLVEQGS-LELRYVALRLLTLLWKANDRHF----PFLQPL 79 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccC-ccchhH-----HHHHHHHHHcCCc-hhHHHHHHHHHHHHHHhCchHH----HHHHHH
Confidence 4567888888888888865554 121111 2334444444333 2222346667777665554332 222222
Q ss_pred HHh---------hcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh-CCCChhHHHHHHHHHHHhhcCCC
Q 010080 172 IAH---------LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM-LPNKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 172 v~l---------L~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~ 241 (518)
+.. .......+.....+.++..+|...++ -....++.+..++ ++.+...+..+.-++..||...
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~- 153 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE- 153 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh-
Confidence 222 11123455666667788888876655 2223577788888 6778888899999999999542
Q ss_pred CCchhhHHHhhchHHHHHHHhccC-ChhHHHHHHHHHHHhhcCCchhh-hHHHhcCchHHHHHHH
Q 010080 242 PKPATELIKVDGLLDAILRHLKRA-DEELTTEVAWVVVYLSALSNVAT-SLLVKSGVLQLLVERL 304 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~-~~~~~~g~~~~Lv~lL 304 (518)
++........+.+-+..+ .+.+....|..+..+..+.-+.. .......++..+-++.
T Consensus 154 ------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~ 212 (234)
T PF12530_consen 154 ------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYT 212 (234)
T ss_pred ------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhc
Confidence 332335555566655433 35565555555555554332221 1123344555555544
No 286
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=65.51 E-value=77 Score=27.18 Aligned_cols=74 Identities=9% Similarity=0.084 Sum_probs=57.6
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhcc-CCHHHHHHHHHHHHHH
Q 010080 387 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-ADIEAARLGLQFMELV 465 (518)
Q Consensus 387 ~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d~~~~~~~l~~l~~i 465 (518)
++..|..-|.+.++.++.-|+..|-.++.++ |. .....+.+..++..|..++.. .++.+...+++.+..-
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNC----G~-----~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W 108 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENC----GK-----RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC----CH-----HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 4556777788899999999999888887653 32 334566788999999999988 7888999998888877
Q ss_pred HccC
Q 010080 466 LRGM 469 (518)
Q Consensus 466 l~~~ 469 (518)
-...
T Consensus 109 ~~~f 112 (144)
T cd03568 109 ADEF 112 (144)
T ss_pred HHHh
Confidence 5443
No 287
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=65.40 E-value=1.6e+02 Score=32.52 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~ 161 (518)
.+|..++ .|.|....-++...+++.+...+.+. ++..||.+.-+.++ ..|+.+|..+-. + +.
T Consensus 7 ~~l~~~l---~s~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~l~~y~~~t~s----~~~~~il~~~~~--P-~~ 68 (668)
T PF04388_consen 7 TELLSLL---ESNDLSVLEEIKALLQELLNSDREPW--------LVNGLVDYYLSTNS----QRALEILVGVQE--P-HD 68 (668)
T ss_pred HHHHHHh---cCCchhhHHHHHHHHHHHhhccchHH--------HHHHHHHHHhhcCc----HHHHHHHHhcCC--c-cH
Confidence 4444444 58888888888888888887766442 24555655433222 234555554432 2 11
Q ss_pred HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhh
Q 010080 162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLI 237 (518)
Q Consensus 162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~ 237 (518)
+.+ ...|-.++.. +.-|-.++..|+.+....+..-..+.+...++.|+++|..+ +..+...|+.+|..|.
T Consensus 69 K~~---~~~l~~~~~~---~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 69 KHL---FDKLNDYFVK---PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred HHH---HHHHHHHHcC---chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 121 2233344433 46788899999999987788888899999999999998855 7778888888888776
No 288
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=65.37 E-value=46 Score=33.25 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCC-----C-ChHHHHHHHH
Q 010080 75 MQTSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-----S-PDEQLLEAAW 148 (518)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~-----~-~~~~~~eA~~ 148 (518)
.+....++++.+.+. +++...+..|+..|+. ++-+ ..++|.|++|+... + +-......+.
T Consensus 174 ~Elq~yf~~It~a~~---~~~~~~r~~aL~sL~t------D~gl-----~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~ 239 (343)
T cd08050 174 KELQLYFEEITEALV---GSNEEKRREALQSLRT------DPGL-----QQLLPYFVRFIAEGVTVNLDQNLALLIYLMR 239 (343)
T ss_pred HHHHHHHHHHHHHHh---CCCHHHHHHHHHHhcc------CCCc-----hhhhhHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 334455666666654 4667777777776655 3333 34789999998632 1 1222233444
Q ss_pred HHHHHhcCChHHHHHhc-CChHHHHHhhcC---------CCCHHHHHHHHHHHHhhhC
Q 010080 149 CLTNIAAGKQEETKALL-PALPLLIAHLGE---------KSSSPVAEQCAWALGNVAG 196 (518)
Q Consensus 149 ~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~---------~~~~~v~~~a~~~L~nla~ 196 (518)
.+..+..+..-.....+ ..+|.++.++-+ .++..+|+.|+.+|+.||.
T Consensus 240 ~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 240 MVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred HHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 44455544433333333 477887776632 1245788888888888874
No 289
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=64.64 E-value=1.7e+02 Score=30.33 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChH---HHHHHHHHHHHH
Q 010080 77 TSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDE---QLLEAAWCLTNI 153 (518)
Q Consensus 77 ~~~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~---~~~eA~~~L~ni 153 (518)
....+..|-.++..-.+..-+-.++|+..+--.+...-.|-...++ ..++..+....++++++. -.||+..++...
T Consensus 24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il-~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~ 102 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEIL-QHLTAILKEVSKNPSNPRFNHYLFESIGALIRF 102 (435)
T ss_dssp HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHH-HHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence 3445677777776544444455666665554433333333222222 234444444444444432 237877777666
Q ss_pred hc-CChHHHHHhcC-ChHHHHHhhcCCCCHHHHHHHHHHHHhhh
Q 010080 154 AA-GKQEETKALLP-ALPLLIAHLGEKSSSPVAEQCAWALGNVA 195 (518)
Q Consensus 154 a~-~~~~~~~~v~~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla 195 (518)
.+ .+++....+-+ .+|.+...|+. +-.+....+...|+-+.
T Consensus 103 ~~~~~~~~v~~~E~~L~P~f~~ILq~-dV~EF~PYvfQIla~Ll 145 (435)
T PF03378_consen 103 VCEADPEAVSQFEEALFPPFQEILQQ-DVQEFIPYVFQILAQLL 145 (435)
T ss_dssp S-GGGHH---HHHHHHHHHHHHHHHT-T-TTTHHHHHHHHHHHH
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 54 44443444444 78899999986 44555555555555543
No 290
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=63.77 E-value=8.3 Score=22.81 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHh
Q 010080 359 VLKKEAAWVLSNI 371 (518)
Q Consensus 359 ~i~~~a~~~Lsnl 371 (518)
.+|.+|+++|+++
T Consensus 2 ~vR~~aa~aLg~~ 14 (30)
T smart00567 2 LVRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHHc
Confidence 5799999999999
No 291
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=63.15 E-value=21 Score=34.51 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=45.9
Q ss_pred ChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH----HHHhc--------cCChhHHHHHHHHH
Q 010080 210 ALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI----LRHLK--------RADEELTTEVAWVV 277 (518)
Q Consensus 210 ~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L----~~lL~--------~~d~~v~~~a~~~L 277 (518)
++|+++.++++.++.++..++.+|..|.....+. ....+...|..+.+ ..++. .+...+...+.-||
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~-~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA-EWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh-hhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 5899999999999999999999999998653221 11123344544433 33443 22345666666666
Q ss_pred HHhh
Q 010080 278 VYLS 281 (518)
Q Consensus 278 ~~L~ 281 (518)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 6663
No 292
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=62.77 E-value=1.5e+02 Score=28.43 Aligned_cols=59 Identities=19% Similarity=0.119 Sum_probs=35.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcC--CCChHHHHHHHHHHHHHh
Q 010080 91 HGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF--GSPDEQLLEAAWCLTNIA 154 (518)
Q Consensus 91 ~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~--~~~~~~~~eA~~~L~nia 154 (518)
+.++|...+-+|+..|...|..-+.. .+...-+..|++|+.+ ++.. ....|+.++..+.
T Consensus 8 Ltsed~~~R~ka~~~Ls~vL~~lp~~----~L~~~ev~~L~~F~~~rl~D~~-~~~~~l~gl~~L~ 68 (262)
T PF14500_consen 8 LTSEDPIIRAKALELLSEVLERLPPD----FLSRQEVQVLLDFFCSRLDDHA-CVQPALKGLLALV 68 (262)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCCHh----hccHHHHHHHHHHHHHHhccHh-hHHHHHHHHHHHH
Confidence 45788888889999988888765321 2344446677777642 2222 2233445554444
No 293
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=62.56 E-value=6.8 Score=32.71 Aligned_cols=70 Identities=14% Similarity=0.321 Sum_probs=44.1
Q ss_pred chHHHHHhh---ccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhh-chHHHHHHH---hc-C-----CCHHHHHHHHHH
Q 010080 439 CLSGFIDLV---RSADIEAARLGLQFMELVLRGMPNHEGTKLVERE-DGIDAMERF---QF-H-----ENEDLRNMANGL 505 (518)
Q Consensus 439 ~i~~L~~lL---~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~-ggl~~l~~L---~~-~-----~~~~i~~~a~~i 505 (518)
++..|..-| ..++...+.++|..|..++..++. .++.+. .....|..| +. + ....|+++|..|
T Consensus 40 I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~----~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i 115 (125)
T PF01417_consen 40 IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSE----RFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEI 115 (125)
T ss_dssp HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-H----HHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHH
Confidence 455666666 567788999999999999988754 222222 233344444 32 1 123699999999
Q ss_pred HHhhcCc
Q 010080 506 VDKYFGE 512 (518)
Q Consensus 506 l~~~f~~ 512 (518)
++-.+++
T Consensus 116 ~~lL~d~ 122 (125)
T PF01417_consen 116 LELLNDD 122 (125)
T ss_dssp HHHHTSH
T ss_pred HHHhCCc
Confidence 9866554
No 294
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=62.07 E-value=19 Score=24.78 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=29.3
Q ss_pred chhHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHHhh
Q 010080 474 GTKLVEREDGIDAMERFQFH-ENEDLRNMANGLVDKY 509 (518)
Q Consensus 474 ~~~~ie~~ggl~~l~~L~~~-~~~~i~~~a~~il~~~ 509 (518)
....+.+.|.-..+..|..| ++++|.+.|..|+++.
T Consensus 12 t~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 12 TVELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp SHHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred CHHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 35677777777788889999 9999999999999864
No 295
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=61.89 E-value=24 Score=28.05 Aligned_cols=70 Identities=9% Similarity=0.173 Sum_probs=57.0
Q ss_pred hcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080 436 GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK 508 (518)
Q Consensus 436 ~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~ 508 (518)
....+..|+.-++.+++.....+|..+..+++.. .....+.+.|+.+-+.++..+-+++.+.....|++.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~---~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP---YAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc---HHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 3456777777777777778888999999988753 246788899999999999999999999988888874
No 296
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=61.73 E-value=1.6e+02 Score=31.84 Aligned_cols=65 Identities=9% Similarity=0.196 Sum_probs=54.5
Q ss_pred hHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 345 ~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
.+..+-.+|....+.+|+..=.+++-++..+|.. +++..|-...+.+|.++-..|.++++-+-.+
T Consensus 641 ~lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGAG 705 (878)
T KOG2005|consen 641 VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAG 705 (878)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccCC
Confidence 4566777888899999999999999998888643 4788899999999999999999999887553
No 297
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.67 E-value=3.9e+02 Score=32.95 Aligned_cols=307 Identities=17% Similarity=0.154 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHhhhCC-ChhhHHHHHhcCChhHHHhhhC-CCChhHHHHHH------HHHHHhhcCCCC-CchhhHHHhh
Q 010080 182 PVAEQCAWALGNVAGE-GEEFRNVLLSQGALPPLARMML-PNKGSTVRTAA------WALSNLIKGPDP-KPATELIKVD 252 (518)
Q Consensus 182 ~v~~~a~~~L~nla~d-~~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~------~~L~nL~~~~~~-~~~~~~i~~~ 252 (518)
.+...++...|.+... ++..|-.+++.+ +..+.-.. .....++.++. .++.+++.++.. ..-.+.+ ..
T Consensus 799 s~Idta~~lfg~vfp~v~~k~~~~ile~~--~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v-~~ 875 (2067)
T KOG1822|consen 799 SLIDTAVSLFGSVFPHVNNKIRLSILEHF--PESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEV-RS 875 (2067)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHH--HHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHH-HH
Confidence 4556666666666543 334444444431 22221111 12233433333 345566655432 1112222 23
Q ss_pred chHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccc-
Q 010080 253 GLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI- 331 (518)
Q Consensus 253 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~- 331 (518)
-.+..++..+...++..+..+.-++..++.--++. ..-++..+..+.-|.+..++-.+.--.-++|.+-.......
T Consensus 876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 44556667777788887777777777777522111 11134455666666544555555544445555543321110
Q ss_pred ceeeccCCCchhhhHHHHHHHhccCh-hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh-cCCC--hhHHHHHH
Q 010080 332 SDVLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSP--FDIKKEVA 407 (518)
Q Consensus 332 ~~~i~~G~~~~~~~l~~L~~lL~~~~-~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL-~~~~--~~v~~eA~ 407 (518)
...+ ...+..+..+...+. |.|+..+..+++-++.....-....++.. +..+..+| ..+. .++...--
T Consensus 953 ~qhl-------~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~t-lsl~~~lLls~p~~~~ev~q~~~ 1024 (2067)
T KOG1822|consen 953 GQHL-------NTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPT-LSLCLKLLLSVPTSHVEVHQCYN 1024 (2067)
T ss_pred chhc-------ccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHH-HHHHHHHcCCCCcchhhhhhhhc
Confidence 1111 135667777776654 59999999999988764433333333332 22333333 3332 22222222
Q ss_pred HHHH------Hhc--CCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCC-cchhHH
Q 010080 408 YVLG------NLC--VSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNH-EGTKLV 478 (518)
Q Consensus 408 ~aL~------nl~--~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~-~~~~~i 478 (518)
.++. ++. .+++ -++++. .+....+ ..-++-..+=++..+|+-++..+.++++++--+.+.. .+...+
T Consensus 1025 R~~~~~~~~~alittlgpe-L~~N~~--~d~t~~~-rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV 1100 (2067)
T KOG1822|consen 1025 RCFNGDDDEDALITTLGPE-LGPNGD--KDSTSTL-RTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLV 1100 (2067)
T ss_pred cccccchhHHHHHHhcccc-cCCCCc--ccchhHH-HHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHH
Confidence 2221 221 1121 112210 0011111 1123334444555668888888888888886655431 122222
Q ss_pred Hhhch-------------HHHHHHHhcCCCHHHHHHHHHHH
Q 010080 479 EREDG-------------IDAMERFQFHENEDLRNMANGLV 506 (518)
Q Consensus 479 e~~gg-------------l~~l~~L~~~~~~~i~~~a~~il 506 (518)
-+.-+ +.-+.+|-..+..++.+.|.-+.
T Consensus 1101 ~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~ 1141 (2067)
T KOG1822|consen 1101 LQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLA 1141 (2067)
T ss_pred HHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhh
Confidence 22211 33455556666777777776555
No 298
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=60.25 E-value=2e+02 Score=29.13 Aligned_cols=302 Identities=17% Similarity=0.156 Sum_probs=156.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCC--------C--ChHHHHHHHHHHHHHhcCChHHHH
Q 010080 93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG--------S--PDEQLLEAAWCLTNIAAGKQEETK 162 (518)
Q Consensus 93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~--------~--~~~~~~eA~~~L~nia~~~~~~~~ 162 (518)
+.+-+.++.|-..|...+....+.|-...+ ..-++.++++++.+ + ...+...|+.+|+.+.... +-..
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l-~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~-~i~~ 81 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQAL-QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHP-EIVS 81 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccH-HHHh
Confidence 455667777777777777765554443333 34566777766521 1 2334456888888887542 2333
Q ss_pred HhcC-----ChHHHHHhhcC-CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC-----CCChhHHHHHHH
Q 010080 163 ALLP-----ALPLLIAHLGE-KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-----PNKGSTVRTAAW 231 (518)
Q Consensus 163 ~v~~-----~v~~Lv~lL~~-~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~-----~~~~~~~~~a~~ 231 (518)
.+-+ .+...+..|.. ..+..+...++|+|..=- +...++....+..++..+. -+...+.....-
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-----f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-----FSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----CCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 3321 34445555543 245678888999988533 3333555555555555443 235677888888
Q ss_pred HHHHhhcCCCCCchhhHHHhhc-hHHHHHHHhccCChhHHHHHHHHHHHhhc--CCchh-h---hHHHh----cC-----
Q 010080 232 ALSNLIKGPDPKPATELIKVDG-LLDAILRHLKRADEELTTEVAWVVVYLSA--LSNVA-T---SLLVK----SG----- 295 (518)
Q Consensus 232 ~L~nL~~~~~~~~~~~~i~~~~-~l~~L~~lL~~~d~~v~~~a~~~L~~L~~--~~~~~-~---~~~~~----~g----- 295 (518)
++.+|.... |. .++.... .+|.++..+-+....++..|..++..+.. +++.. . ....+ .+
T Consensus 157 i~~~ll~q~-p~---~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~ 232 (372)
T PF12231_consen 157 IYKRLLSQF-PQ---QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQL 232 (372)
T ss_pred HHHHHHHHH-HH---HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHH
Confidence 888888542 22 2333333 78888877777777777665555444332 11111 1 11111 12
Q ss_pred chHHHHHHHccCCCccchhhhhhhhhhhhcCCCc-ccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc-
Q 010080 296 VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSS-TISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA- 373 (518)
Q Consensus 296 ~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~-~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~- 373 (518)
+.+.|..++. ..+.....+-+|..--..-++.. .....+ ...+...-..++++++.+|.+|..+=..++.
T Consensus 233 ~~~~L~~mi~-~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-------n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 233 YCERLKEMIK-SKDEYKLAMQIWSVVILLLGSSRLDSWEHL-------NEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred HHHHHHHHHh-CcCCcchHHHHHHHHHHHhCCchhhccHhH-------hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2333555553 32334444444443333333321 111111 2456666667788888888887655444432
Q ss_pred --CCHHHHHHHHhCCCHHHHHHHhcC-CCh----hHHHHHHHHHHHhc
Q 010080 374 --GSVEHKQLIHSSEALALLLHLLST-SPF----DIKKEVAYVLGNLC 414 (518)
Q Consensus 374 --~~~~~~~~li~~~~i~~Li~lL~~-~~~----~v~~eA~~aL~nl~ 414 (518)
.++......+.- +..++...++. ... .++..+...++|+.
T Consensus 305 ~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 305 SNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred hcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 122222222222 33444444533 223 44555555565554
No 299
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=59.65 E-value=53 Score=34.45 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=58.2
Q ss_pred HHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCC------CCCchhHHHHHHHHHhcCchHHHHHh-hc
Q 010080 377 EHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEG------EGKPKLIQEHLVSLVGRGCLSGFIDL-VR 448 (518)
Q Consensus 377 ~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~------~~~~~~~~~~~~~l~~~g~i~~L~~l-L~ 448 (518)
..++-+.+.++++.|+.+|. ..+.+++..|+.+|+.+..-+... .-.|. .-.+.|.+..++..|++. |.
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn---~L~r~L~S~~~v~~Ll~~mL~ 129 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPN---PLTRQLVSEETVEKLLDIMLN 129 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCcc---HHHHHHhChHHHHHHHHHHhc
Confidence 44455667899999999995 557789999998887775432110 01133 346788888899988885 43
Q ss_pred cCCHHHHHHHHHHHHHHHcc
Q 010080 449 SADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 449 ~~d~~~~~~~l~~l~~il~~ 468 (518)
......+..++..+..+++.
T Consensus 130 ~~~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 130 SQGGSSLVNGVSILIELIRK 149 (475)
T ss_pred CCCcchHHHHHHHHHHHHHh
Confidence 23344455566666666653
No 300
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=59.16 E-value=1.2e+02 Score=33.73 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCChHHHHHhc---CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC
Q 010080 146 AAWCLTNIAAGKQEETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK 222 (518)
Q Consensus 146 A~~~L~nia~~~~~~~~~v~---~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~ 222 (518)
...+|..++.-.+++...++ ++...++.++-+ ++.++.+.|.-.|..+.+. .. -...+-.++++.-
T Consensus 501 ~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfs-p~~~l~qaA~~llk~~~d~--~~--------R~e~i~~ll~~~~ 569 (727)
T PF12726_consen 501 ISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFS-PDDDLYQAAQDLLKQAFDV--DG--------RLEAIQALLQSNF 569 (727)
T ss_pred HHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeC-CChHHHHHHHHHHHHHhcC--Cc--------HHHHHHHHHHHhH
Confidence 67788888988888888888 377888888877 7899999999999998862 22 2344445555555
Q ss_pred hhHHHHHHHHHHHhhcCC
Q 010080 223 GSTVRTAAWALSNLIKGP 240 (518)
Q Consensus 223 ~~~~~~a~~~L~nL~~~~ 240 (518)
........|.|..+...+
T Consensus 570 ~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 570 SPTLSAINWSLRQLTKLK 587 (727)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 677888889999888654
No 301
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=59.01 E-value=50 Score=24.70 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=33.7
Q ss_pred HHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080 457 LGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 509 (518)
Q Consensus 457 ~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~ 509 (518)
.++++|..+-.. + .....+.+...-..+..|..|+|++|...|..+++.+
T Consensus 20 ~~l~~L~~L~~~-~--~t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 20 RCLDILKKLKKL-P--ITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred HHHHHHHHHhcC-C--CCHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 344545544321 1 2355666655555688899999999999999999854
No 302
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=58.67 E-value=1.9e+02 Score=35.70 Aligned_cols=267 Identities=10% Similarity=0.044 Sum_probs=136.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHH
Q 010080 93 KGAMQKRVNALRELRRLLSRFE--FPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPL 170 (518)
Q Consensus 93 s~~~~~~~~a~~~lr~lls~~~--~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~ 170 (518)
+.+.+..+.|+..||++.-+.- ......-.+...+..|..++......+++.-.+.|+.++..... ..+..+.+.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nIkSGWkt 1224 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNVKSGWKS 1224 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhhhcCcHH
Confidence 3467788999999988533221 11111123455777888888755545554448888888874322 233334444
Q ss_pred HHHhhc---CCCCHHHHHHHHHHHHhhhCCChhhHHHHHh--cC----ChhHHHhhhCCC-ChhHHHHHHHHHHH----h
Q 010080 171 LIAHLG---EKSSSPVAEQCAWALGNVAGEGEEFRNVLLS--QG----ALPPLARMMLPN-KGSTVRTAAWALSN----L 236 (518)
Q Consensus 171 Lv~lL~---~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~--~g----~i~~L~~ll~~~-~~~~~~~a~~~L~n----L 236 (518)
++..|. ...++.+.+.|..++..|+.+.-. .+.. .+ .|..|..+.... +.++--.|+-.|++ +
T Consensus 1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~---~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP---YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh---hccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 444443 235688889998888888754211 1110 12 233344444322 23333333333332 2
Q ss_pred hcCCCC----------------------Cc-----hhhHHHhhchHHHHHHH---hccCChhHHHHHHHHHHHhhcCC--
Q 010080 237 IKGPDP----------------------KP-----ATELIKVDGLLDAILRH---LKRADEELTTEVAWVVVYLSALS-- 284 (518)
Q Consensus 237 ~~~~~~----------------------~~-----~~~~i~~~~~l~~L~~l---L~~~d~~v~~~a~~~L~~L~~~~-- 284 (518)
+.+... .. ..+. .....+|.|..+ ..+++.+|+..|+-+|..+....
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDD-HLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred Hhccccccccccccccccccccccccccccccccccchh-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 221000 00 0000 013456666555 45777899999999988777522
Q ss_pred ---chhhhHHHhcCchHHHHHHHccC------C-----------C--------ccchhhhhhhhhhhhcCCCcccceeec
Q 010080 285 ---NVATSLLVKSGVLQLLVERLATS------N-----------S--------LQLLIPVLRSLGNLVAGDSSTISDVLV 336 (518)
Q Consensus 285 ---~~~~~~~~~~g~~~~Lv~lL~~~------~-----------~--------~~v~~~al~~L~nl~~~~~~~~~~~i~ 336 (518)
++....++. +++-++...+... . + .+....|++.+..+.+.-=+....++
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L- 1458 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL- 1458 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 222233333 4455555444211 0 0 02223445555554433212222222
Q ss_pred cCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC
Q 010080 337 PGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 374 (518)
Q Consensus 337 ~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~ 374 (518)
.+++..|..++..++..+-+-++-+|.++...
T Consensus 1459 ------~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1459 ------KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred ------HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 24555666666677778888888888888754
No 303
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=58.12 E-value=47 Score=28.01 Aligned_cols=71 Identities=10% Similarity=-0.107 Sum_probs=46.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChH-HHHHHHHHHHHHh
Q 010080 84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDE-QLLEAAWCLTNIA 154 (518)
Q Consensus 84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~-~~~eA~~~L~nia 154 (518)
+..+.+.++++++..++.|+..+--++.+...+...++.....+..|+.++....... ++..++..+...+
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 3333445668889999999888888777665444455656778888888887544333 4444555555555
No 304
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=57.53 E-value=63 Score=29.84 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc---------
Q 010080 95 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--------- 165 (518)
Q Consensus 95 ~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--------- 165 (518)
-+..++.++..+-.++.++...-+.......++|.+++.+..++ +..+.-|+.++..|-.++. ..+.+.
T Consensus 159 fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gS-ElSktvaifI~qkil~dDv-GLqYiCqT~eRFyAv 236 (315)
T COG5209 159 FEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGS-ELSKTVAIFIFQKILGDDV-GLQYICQTFERFYAV 236 (315)
T ss_pred cceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhh-HHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHH
Confidence 45567888988988888877655566667899999999998765 4445668888888776543 233222
Q ss_pred -CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHH
Q 010080 166 -PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 203 (518)
Q Consensus 166 -~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 203 (518)
..+..++..+-+.....+...+++|--.++. .+..|.
T Consensus 237 ~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd-~p~aR~ 274 (315)
T COG5209 237 NLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD-KPHARA 274 (315)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHheeecC-CHhHHH
Confidence 1222333333333445666666666666665 444443
No 305
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=57.37 E-value=18 Score=35.90 Aligned_cols=83 Identities=14% Similarity=0.244 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhcCCchhhhHHHhcC--chHHHHHHHccCC--CccchhhhhhhhhhhhcCCCcccceeeccCCCchhh
Q 010080 269 LTTEVAWVVVYLSALSNVATSLLVKSG--VLQLLVERLATSN--SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ 344 (518)
Q Consensus 269 v~~~a~~~L~~L~~~~~~~~~~~~~~g--~~~~Lv~lL~~~~--~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~ 344 (518)
++..|..++.|+.. +......++..+ ++..|++++.-+. ...++..|+++|..|+.......+.+-..|..+.+|
T Consensus 238 iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 238 IRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 34445555555553 444555666655 8999999985222 234677899999999976654444444446667888
Q ss_pred hHHHHHHH
Q 010080 345 VIAVLVKC 352 (518)
Q Consensus 345 ~l~~L~~l 352 (518)
+++.+++-
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 98887653
No 306
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=57.36 E-value=1.8e+02 Score=27.79 Aligned_cols=165 Identities=19% Similarity=0.172 Sum_probs=88.3
Q ss_pred CccchhhhhhhhhhhhcCCCcccceeeccCC-Cc---hhhhHHHHHHHhccChh----hhHHHHHHHHHHhccCCHHHHH
Q 010080 309 SLQLLIPVLRSLGNLVAGDSSTISDVLVPGH-GI---TDQVIAVLVKCLKSEHR----VLKKEAAWVLSNIAAGSVEHKQ 380 (518)
Q Consensus 309 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~-~~---~~~~l~~L~~lL~~~~~----~i~~~a~~~Lsnl~~~~~~~~~ 380 (518)
+.....++++.+..++.-.+.. +++.+. .+ -...+|.+..-+..+.+ .....++-.|+.++...
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~---lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~----- 146 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDP---LIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ----- 146 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCcc---ccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-----
Confidence 4455678888888887654432 232220 00 12456666666666551 23445666666665321
Q ss_pred HHHhCCCHHHHHHHhcCCCh----hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHH
Q 010080 381 LIHSSEALALLLHLLSTSPF----DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 456 (518)
Q Consensus 381 ~li~~~~i~~Li~lL~~~~~----~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~ 456 (518)
...-+..++.....+.+ +--+.++..|+.-.. | + .+..++..|..+|.++-+-++.
T Consensus 147 ---~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--------P----~-----~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 147 ---GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--------P----D-----HEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred ---CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--------c----h-----hHHHHHHHHHHHHhCCcHHHHH
Confidence 11223334444444333 233344444444321 1 0 1223567799999999999999
Q ss_pred HHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080 457 LGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK 508 (518)
Q Consensus 457 ~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~ 508 (518)
.+++.|..++....-.. . ...+-+..|.+|.. .+....|.++++.
T Consensus 207 ~~L~iL~~ll~~~d~~~-~---~~~dlispllrlL~---t~~~~eAL~VLd~ 251 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRS-P---HGADLISPLLRLLQ---TDLWMEALEVLDE 251 (262)
T ss_pred HHHHHHHHHhccccCCC-C---cchHHHHHHHHHhC---CccHHHHHHHHHH
Confidence 99999999997654321 1 12223444444443 3455666666664
No 307
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=57.24 E-value=96 Score=27.18 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=60.2
Q ss_pred cHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC-ChHHHHH-hhcCCC-CHHHHHHHHHHHHh
Q 010080 117 PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP-ALPLLIA-HLGEKS-SSPVAEQCAWALGN 193 (518)
Q Consensus 117 ~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~-~v~~Lv~-lL~~~~-~~~v~~~a~~~L~n 193 (518)
....+++..+.|.+.+.+.+++ ..+...++.++..+...-....+.-++ .++.++. ++.+.. ...-++.++.++..
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~ 143 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRE 143 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence 5667778889999999887655 444345888888888543333333333 5555555 555422 35688889999999
Q ss_pred hhCCChhhHHHHHhc
Q 010080 194 VAGEGEEFRNVLLSQ 208 (518)
Q Consensus 194 la~d~~~~r~~~~~~ 208 (518)
++.+..-..+...+.
T Consensus 144 l~~~p~~l~~lf~NY 158 (168)
T PF12783_consen 144 LCKDPQFLVDLFVNY 158 (168)
T ss_pred HHhChhHHHHHHHHc
Confidence 998765555555443
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=57.05 E-value=1e+02 Score=34.36 Aligned_cols=165 Identities=10% Similarity=0.097 Sum_probs=89.7
Q ss_pred CcHHHHHHcCCHHHHHHHhcCCCC-------hHHHHHHHHHHHHHhcCChHHHHHh---c------CChHHHHHhhcC--
Q 010080 116 PPIETALKAGAIPVLVQCLAFGSP-------DEQLLEAAWCLTNIAAGKQEETKAL---L------PALPLLIAHLGE-- 177 (518)
Q Consensus 116 ~~~~~~i~~g~ip~Lv~~L~~~~~-------~~~~~eA~~~L~nia~~~~~~~~~v---~------~~v~~Lv~lL~~-- 177 (518)
++...+.+.+.+..++++...... .+....|+.+|.-+.+-..-++... . .++..++..-..
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~ 671 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSN 671 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccc
Confidence 455667777777777777763211 1223345555555444322222211 1 144444433221
Q ss_pred -CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhH--HHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhc
Q 010080 178 -KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPP--LARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG 253 (518)
Q Consensus 178 -~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~--L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~ 253 (518)
.-+++++..|+.++-|...-.|.+|...+..-+-.. =-.++. .+......+...-.++-. ....
T Consensus 672 ~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~V------------r~nd 739 (1516)
T KOG1832|consen 672 SIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAV------------RGND 739 (1516)
T ss_pred cccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHH------------hcCc
Confidence 137899999999999987756677655442211000 000111 112333344433333333 3457
Q ss_pred hHHHHHHHhccCC-----hhHHHHHHHHHHHhhcCCchhhhHHHh
Q 010080 254 LLDAILRHLKRAD-----EELTTEVAWVVVYLSALSNVATSLLVK 293 (518)
Q Consensus 254 ~l~~L~~lL~~~d-----~~v~~~a~~~L~~L~~~~~~~~~~~~~ 293 (518)
+|..|++||+... ..++.-||.+|.-|++ ++...|.+.+
T Consensus 740 GIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR-~~tVrQIltK 783 (1516)
T KOG1832|consen 740 GIKILLKLLQYKNPPTTADCIRALACRVLLGLAR-DDTVRQILTK 783 (1516)
T ss_pred cHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc-CcHHHHHHHh
Confidence 8889999998654 3789999999999998 4445555543
No 309
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=56.90 E-value=31 Score=29.42 Aligned_cols=70 Identities=7% Similarity=0.189 Sum_probs=47.5
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHh-cCCCHH---HHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQ-FHENED---LRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~-~~~~~~---i~~~a~~il~~~ 509 (518)
++..|..-|..+++.++..+|.+|..+++.|+. .+...+-....++.|..|. ...... |++++..+|..+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~-~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP-RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH-HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 455566667889999999999999999987643 2223333334566676653 344444 899998888753
No 310
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=55.91 E-value=58 Score=24.39 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=28.5
Q ss_pred chhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080 474 GTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 509 (518)
Q Consensus 474 ~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~ 509 (518)
....+.+.+.-..+..|..|++++|...|..++..+
T Consensus 36 t~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 36 TVEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred CHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 355666666556788899999999999999998754
No 311
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=55.52 E-value=43 Score=24.73 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchH
Q 010080 228 TAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQ 298 (518)
Q Consensus 228 ~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~ 298 (518)
+..|+++.|-.. |+...++. ..+...+..-+..-++....+++|+++.+-.-+.+.++.+.+...+.
T Consensus 3 ~il~~fa~LNy~--P~~~~~f~--~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 3 SILLPFARLNYQ--PPNAEEFF--EKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHHhcCCC--CCCHHHHH--HHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 467777777533 33222221 23444555555566789999999999999887777777776554443
No 312
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=55.17 E-value=1.2e+02 Score=32.24 Aligned_cols=159 Identities=14% Similarity=0.069 Sum_probs=91.1
Q ss_pred hHHHHHHHhccC--hhhhHHHHHHHH---HHhccC-CHHH---HHHHHhCCCHHHHHH----HhcCCChhHHHHHHHHHH
Q 010080 345 VIAVLVKCLKSE--HRVLKKEAAWVL---SNIAAG-SVEH---KQLIHSSEALALLLH----LLSTSPFDIKKEVAYVLG 411 (518)
Q Consensus 345 ~l~~L~~lL~~~--~~~i~~~a~~~L---snl~~~-~~~~---~~~li~~~~i~~Li~----lL~~~~~~v~~eA~~aL~ 411 (518)
.+..+..-+.+. +..++..+.-.+ .+.... .+.. +...+..++.|.+-. -....+...|.-|-.+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 455555555555 456666665555 444433 3333 334556677776610 112346778888999999
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHH-HHH
Q 010080 412 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM-ERF 490 (518)
Q Consensus 412 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l-~~L 490 (518)
.++... |.. ..-+.+.+.-|++-|...++++...+-++|..++.................+..+ ...
T Consensus 400 ~L~~~~------p~l------~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~ 467 (501)
T PF13001_consen 400 LLAKRA------PSL------FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSY 467 (501)
T ss_pred HHHccC------ccc------ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhh
Confidence 998742 211 1123467788888888888999888888888887654432210000111111111 111
Q ss_pred hcCCCHHHHHHHHHHHHhhcCccCC
Q 010080 491 QFHENEDLRNMANGLVDKYFGEDYG 515 (518)
Q Consensus 491 ~~~~~~~i~~~a~~il~~~f~~~~~ 515 (518)
..+.....+-.|.+-..+.|+.+|-
T Consensus 468 ~~~~~~~~R~~avk~an~~fpf~d~ 492 (501)
T PF13001_consen 468 IQSEVRSCRYAAVKYANACFPFSDV 492 (501)
T ss_pred ccchhHHHHHHHHHHHHHhCCccch
Confidence 2234455666778888888888763
No 313
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=53.94 E-value=1.2e+02 Score=25.29 Aligned_cols=85 Identities=18% Similarity=0.247 Sum_probs=51.0
Q ss_pred HHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-cCchHHHHHh
Q 010080 368 LSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG-RGCLSGFIDL 446 (518)
Q Consensus 368 Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~-~g~i~~L~~l 446 (518)
|.+++..++..... ++..|..-|++.++.|+..|+.+|-++|.. |.+ +..+.+.+ ...|..+.++
T Consensus 25 ia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~-----G~~----~f~~~~~~~~~~Ik~~~~f 90 (122)
T cd03572 25 IAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEK-----GNS----DFKRELQRNSAQIRECANY 90 (122)
T ss_pred HHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhh-----CCH----HHHHHHHHhHHHHHHHHHc
Confidence 44444444444443 455788889988899999999999999985 222 33344432 2455555555
Q ss_pred hccCCH--------HHHHHHHHHHHHHH
Q 010080 447 VRSADI--------EAARLGLQFMELVL 466 (518)
Q Consensus 447 L~~~d~--------~~~~~~l~~l~~il 466 (518)
-...|+ .|...|-+++..|+
T Consensus 91 ~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 91 KGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred CCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 443332 34445556665554
No 314
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=51.63 E-value=4.1e+02 Score=33.89 Aligned_cols=188 Identities=19% Similarity=0.255 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH
Q 010080 179 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 258 (518)
Q Consensus 179 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L 258 (518)
..-.+++.+.-.+|+++..++.+.-.-+....+..+..+-.+.-.-+...+.--+..+..+ .+.-.... ....+..+
T Consensus 577 ~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~-~~~~i~~~--v~~~l~~~ 653 (2341)
T KOG0891|consen 577 ENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIIS-SPVLISPY--VGPILLVL 653 (2341)
T ss_pred hhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHH-HHHHHHhh--cCchHHHH
Confidence 5677889999999999986664332222222121111111111111111111111111101 00000001 22444556
Q ss_pred HHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccC
Q 010080 259 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPG 338 (518)
Q Consensus 259 ~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G 338 (518)
+..+...+..+...+..++..|+...........+ ..++.+.+.+.+..+..-+..++++++++........+...+
T Consensus 654 ~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~-- 730 (2341)
T KOG0891|consen 654 LPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLD-- 730 (2341)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEeccccc--
Confidence 66666777777788888888888633322322333 445555555554555566788999999998776554443333
Q ss_pred CCchhhhHHHHHHHhccC-hhhhHHHHHHHHHHhccCC
Q 010080 339 HGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGS 375 (518)
Q Consensus 339 ~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Lsnl~~~~ 375 (518)
..-++..+...+..+ ...++.++...++++.+..
T Consensus 731 ---~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 731 ---YPELLDILINILKTEQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred ---ChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence 235667777776655 3578899999999876654
No 315
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=51.43 E-value=1e+02 Score=29.35 Aligned_cols=138 Identities=19% Similarity=0.173 Sum_probs=78.5
Q ss_pred ChhhhHHHHHHHHHHhccCCHHHHHHHHhC-C-CHHHHHHHhcCC----ChhHHHHHHHHHHHhcCCCCCCCCCchhHHH
Q 010080 356 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-E-ALALLLHLLSTS----PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE 429 (518)
Q Consensus 356 ~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~-~-~i~~Li~lL~~~----~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~ 429 (518)
..+..+.-++.+++|+..+. ...+.+.++ + .+...+..+... +..++..++..+.|++........ +.. .
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~-~~~--~ 197 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHP-PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS-DEE--W 197 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSC-CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS--CC--H
T ss_pred CcHHHHHHHHHHHHHhhCCC-ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC-ChH--H
Confidence 45678888999999998764 344555543 2 333333333333 678999999999999653110000 000 0
Q ss_pred HHHHHHhcCchHHHHHhhc--cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHh-cCCCHHHHHHHHHH
Q 010080 430 HLVSLVGRGCLSGFIDLVR--SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQ-FHENEDLRNMANGL 505 (518)
Q Consensus 430 ~~~~l~~~g~i~~L~~lL~--~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~-~~~~~~i~~~a~~i 505 (518)
...++..+...+. ..|++++.-+|-++.+++.... .........|....+.... ....+.+.+-+.+|
T Consensus 198 ------~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~--~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 198 ------QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSD--SAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp ------HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH--HHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCh--hHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 0113555566332 2789999999999999984321 1122222233344444432 55667777766654
No 316
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=51.10 E-value=42 Score=29.35 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=50.5
Q ss_pred HHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhh
Q 010080 118 IETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVA 195 (518)
Q Consensus 118 ~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla 195 (518)
.++..-+.++..|+..|+.++.......++.++.+|...........+ ..+|.++..+... +...+|...+-|+.|.
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~-~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTC-PDSLREFYFQQLADLV 156 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 345555667788888887655433334477777777732211122223 4899999999874 4589999888888765
No 317
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.77 E-value=5e+02 Score=30.94 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=50.9
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH--hcCchHHHHHhhccCCHHHHHHHHHHHH
Q 010080 386 EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV--GRGCLSGFIDLVRSADIEAARLGLQFME 463 (518)
Q Consensus 386 ~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~--~~g~i~~L~~lL~~~d~~~~~~~l~~l~ 463 (518)
+++|.|..-|.+.+..+|++|...++-+..... ..+. .......++.-+.+.++++...+++...
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-------------~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~ 325 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-------------SQLSETYDDLWSAFLGRFNDISVEVRMECVESIK 325 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-------------hhhcccchHHHHHHHHHhccCChhhhhhHHHHhH
Confidence 689999999999999999999999999976421 1111 1234556666666777788777777777
Q ss_pred HHHcc
Q 010080 464 LVLRG 468 (518)
Q Consensus 464 ~il~~ 468 (518)
.++-.
T Consensus 326 ~~l~~ 330 (1266)
T KOG1525|consen 326 QCLLN 330 (1266)
T ss_pred HHHhc
Confidence 66643
No 318
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.93 E-value=2.9e+02 Score=32.78 Aligned_cols=96 Identities=8% Similarity=0.048 Sum_probs=42.6
Q ss_pred CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc----cC---ChhHHHHHHHHHHHhhcCCchhhhHHHh
Q 010080 221 NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK----RA---DEELTTEVAWVVVYLSALSNVATSLLVK 293 (518)
Q Consensus 221 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~----~~---d~~v~~~a~~~L~~L~~~~~~~~~~~~~ 293 (518)
+..+++....-++.++..... +.+. .+ -+.+.+++. .. ...+.....-+|.-+++..-.....-.-
T Consensus 854 ~~~evr~~sl~~l~silet~g-----e~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVG-----EHLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccc-----hhhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 345566666666666654321 1111 22 333333333 11 2245555555555555432222222222
Q ss_pred cCchHHHHHHHccCCCccchhhhhhhhhhh
Q 010080 294 SGVLQLLVERLATSNSLQLLIPVLRSLGNL 323 (518)
Q Consensus 294 ~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl 323 (518)
.+++..++.+-.+..+..+--.|+..+.++
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtv 956 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTV 956 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 445555555544445555555554444443
No 319
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=49.85 E-value=1.6e+02 Score=26.46 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=48.8
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC-ChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh
Q 010080 124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG-KQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE 199 (518)
Q Consensus 124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~-~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~ 199 (518)
.-.+|.+++-|.....+- .+-|...+..+... ..+....++ ..|+.+-.-|.+ .++++...++.+|..++..++
T Consensus 37 ~~~Lpif~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t-r~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT-RDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hhHHHHHHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhh
Confidence 346777777776544332 35566666666533 334444444 467777777876 789999999999999965443
No 320
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=49.52 E-value=2.4e+02 Score=26.95 Aligned_cols=99 Identities=17% Similarity=0.290 Sum_probs=51.8
Q ss_pred HHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHH-HhhhCCCh
Q 010080 121 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWAL-GNVAGEGE 199 (518)
Q Consensus 121 ~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L-~nla~d~~ 199 (518)
+++..++|.|+..=. .+.+...++..|.++.-. ..+. ....+..........-+ ..+.
T Consensus 41 iv~~DLiPiL~~~~~---~~~l~~~~l~LLV~LT~P-------------~~~~-~~~~~~~~~~~~~~~~l~~~l~---- 99 (266)
T PF04821_consen 41 IVQKDLIPILISYKD---DDKLFLACLRLLVNLTWP-------------IELL-VESQPKDKNQRRNIPELLKYLQ---- 99 (266)
T ss_pred hhhhhHHHHHHhccC---chHHHHHHHHHHHHhCCC-------------HHHh-ccCCCCChHHHHHHHHHHHHHH----
Confidence 567778887776532 344545688888888732 1111 11111111111111111 2211
Q ss_pred hhHHHHHhcCChhHHHhhhCC-----------CChhHHHHHHHHHHHhhcCC
Q 010080 200 EFRNVLLSQGALPPLARMMLP-----------NKGSTVRTAAWALSNLIKGP 240 (518)
Q Consensus 200 ~~r~~~~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~nL~~~~ 240 (518)
.++..++..+++..++.++.. .+..+.+.+...+.|+..-+
T Consensus 100 ~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip 151 (266)
T PF04821_consen 100 SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIP 151 (266)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 355566666666666665521 13567778888888887553
No 321
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=49.28 E-value=1.8e+02 Score=29.58 Aligned_cols=105 Identities=12% Similarity=0.188 Sum_probs=62.3
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhcc-CC---HHH-HHHHHHHHHHHHccCCCC
Q 010080 398 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRS-AD---IEA-ARLGLQFMELVLRGMPNH 472 (518)
Q Consensus 398 ~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~-~d---~~~-~~~~l~~l~~il~~~~~~ 472 (518)
.+..|..||..+|+|+..++. ...+......+...+++.+.. .+ +.. ...=++.| +++....-.
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq----------~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLL-flltale~~ 177 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQ----------RAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLL-FLLTALETD 177 (532)
T ss_pred cchHHHHHHHHHHHHHHhccH----------HHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHH-HHHHHhhHH
Confidence 467899999999999998631 222334466666677765543 11 111 11112222 222222211
Q ss_pred cchhHHHhhchHHHHHHHhcCC------------CHHHHHHHHHHHHhhcCcc
Q 010080 473 EGTKLVEREDGIDAMERFQFHE------------NEDLRNMANGLVDKYFGED 513 (518)
Q Consensus 473 ~~~~~ie~~ggl~~l~~L~~~~------------~~~i~~~a~~il~~~f~~~ 513 (518)
...+.+.+.+|++.+.++.++. |++--..|+++|..||+.-
T Consensus 178 ~Rsql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt 230 (532)
T KOG4464|consen 178 HRSQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVT 230 (532)
T ss_pred HHHHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhhee
Confidence 1246778889999887775432 3466688999999999753
No 322
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=49.18 E-value=1.3e+02 Score=25.73 Aligned_cols=59 Identities=22% Similarity=0.434 Sum_probs=44.7
Q ss_pred HHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 348 VLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 348 ~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
.+++-|+.+..++++.|.++|-| .+..+ .+++.+++.|..++...|..-.+.|-.+|..
T Consensus 12 ~~L~~L~aS~qSi~kaa~fAlk~--~~~~e--------dL~~cIle~le~~~lN~R~nI~~fID~l~e~ 70 (139)
T PF12243_consen 12 QLLRRLNASQQSIQKAAQFALKN--RDMEE--------DLWSCILEQLEKENLNTRINIFYFIDSLCES 70 (139)
T ss_pred HHHHHcchhHHHHHHHHHHHHHc--cccHH--------HHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 34445566677899999999988 33322 3788999999999989999988888777654
No 323
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.41 E-value=4e+02 Score=29.91 Aligned_cols=243 Identities=14% Similarity=0.158 Sum_probs=136.8
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC---
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP--- 166 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~--- 166 (518)
|++++-...+.+++..+-++-...+.| .++.+-.+ .|...+..++ ..+.+..+.+.. ....+...+..
T Consensus 32 Glr~~~t~eqpeavvr~~RLFek~Pfp---ifiNs~ll-rLaDaF~~Gn-~llRf~V~rv~~----q~g~hln~v~n~aE 102 (970)
T KOG1988|consen 32 GLRSGKTSEQPEAVVRFPRLFEKYPFP---IFINSQLL-RLADAFPVGN-NLLRFAVLRVDQ----QSGKHLNKVLNGAE 102 (970)
T ss_pred cccccccccchHHHHHHHHHHhhCCch---hhhhHHHH-HHHHHhccCc-HHHHHHHHHHHh----hccccchhhhhhhh
Confidence 667777778888888888866665443 24443322 3444444443 334443344433 11223344443
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhh-hCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARM-MLPNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
.+........ +.|+.-+..++..+|.++.- +-+.+-.+-+++- +.+.+.-=.+.+..+..+++.-...
T Consensus 103 ~lrri~~V~h-snDp~aRAllL~ilg~~s~l-------ipEfn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~--- 171 (970)
T KOG1988|consen 103 FLRRIFYVDH-SNDPVARALLLRILGQLSAL-------IPEFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKD--- 171 (970)
T ss_pred hhheeEEeec-CCCHHHHHHHHHHHHHhhhh-------cccccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhh---
Confidence 2222222333 36788888888888876542 2233445555543 4444544567888888888864321
Q ss_pred hhHHHhhchHHHHHHHhccCC--hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhh
Q 010080 246 TELIKVDGLLDAILRHLKRAD--EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 323 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl 323 (518)
+. .++.-.+..++...+ +......+-+++.|.... .....+...+..++...++.+...+-+.++.++
T Consensus 172 FA----~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~a------t~A~ra~~l~m~lv~~tps~d~~v~fL~stT~L 241 (970)
T KOG1988|consen 172 FA----CSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHA------TGASRAFGLCMSLVSGTPSIDRVVAFLYSTTNL 241 (970)
T ss_pred hH----HHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchh------hhhHHHHHHHHHHhcCCCcccceeeehhhhHHH
Confidence 11 133334445554333 345667788888887521 122334455566665666666777788888888
Q ss_pred hcCCCcccceeeccCCCchhhhHHHHHHHhcc-ChhhhHHHHHHHHHHhcc
Q 010080 324 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRVLKKEAAWVLSNIAA 373 (518)
Q Consensus 324 ~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-~~~~i~~~a~~~Lsnl~~ 373 (518)
+...-.. + .+-+..|.+++.. +...++..+.|.+.+++.
T Consensus 242 asrs~~a----i-------~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 242 ASRSLVA----I-------SEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHH----h-------HHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 7543211 1 2456677777763 445677778888888764
No 324
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=47.31 E-value=2.9e+02 Score=27.19 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHhhhCCChhhHHHHHh
Q 010080 180 SSPVAEQCAWALGNVAGEGEEFRNVLLS 207 (518)
Q Consensus 180 ~~~v~~~a~~~L~nla~d~~~~r~~~~~ 207 (518)
..++|..|+.|+.....++++.+..+++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~ 78 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLS 78 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5788999999999999989999888775
No 325
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.75 E-value=4.6e+02 Score=29.29 Aligned_cols=311 Identities=15% Similarity=0.158 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 010080 79 SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETAL--KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG 156 (518)
Q Consensus 79 ~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i--~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~ 156 (518)
..++.+..+++ ..+|...++.+.+.++-++...+-.+ +.+. -..+...+..+|+.-..-+-....+..|+-+...
T Consensus 526 l~Y~a~lnLL~--d~~D~vV~Ltt~~tlkl~vDD~nF~~-dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r 602 (978)
T KOG1993|consen 526 LLYCAFLNLLQ--DQNDLVVRLTTARTLKLVVDDWNFSE-DSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIER 602 (978)
T ss_pred HHHHHHHHhcC--ccccceeehHHHHHHHHhhhhccCCh-hhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 34455555553 33477788888888888776432111 1221 1333334444444211111123344444444433
Q ss_pred ChHHHHHhcC----ChHHHHHhhcCCCCHHHHHHHHHHHHhhhC----CChhhHHHHHhcCChhHHHhhhC---CC-Chh
Q 010080 157 KQEETKALLP----ALPLLIAHLGEKSSSPVAEQCAWALGNVAG----EGEEFRNVLLSQGALPPLARMML---PN-KGS 224 (518)
Q Consensus 157 ~~~~~~~v~~----~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~----d~~~~r~~~~~~g~i~~L~~ll~---~~-~~~ 224 (518)
..++.....+ .+|.|-.- +.+.+-++.+.+.+|.|+.. .++.+...+ -+.+.+-. ++ +.-
T Consensus 603 ~~e~I~P~~~~ivq~lp~LWe~--s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL------~pVIel~~D~~sP~hv~ 674 (978)
T KOG1993|consen 603 VSEHIAPYASTIVQYLPLLWEE--SEEEPLLRCALLATLRNLVNALGAQSFEFYPFL------YPVIELSTDPSSPEHVY 674 (978)
T ss_pred HHHhhhHHHHHHHHHHHHHHhh--hccCcHHHHHHHHHHHHHHHHhccCCccchHHH------HHHHHHhcCCCCCceee
Confidence 2333322221 22222221 12456677777788887652 233332221 12233222 12 223
Q ss_pred HHHHH--HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHH
Q 010080 225 TVRTA--AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE 302 (518)
Q Consensus 225 ~~~~a--~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~ 302 (518)
+.+.+ .|.- ...+ .+....++ -+.+|.++.++....+.+.....-.=+|+.-.+... -.....|+++.+..
T Consensus 675 L~EDgmeLW~~--~L~n-~~~l~p~l---l~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~ 747 (978)
T KOG1993|consen 675 LLEDGMELWLT--TLMN-SQKLTPEL---LLLFPHLLYIIEQSTENLPTVLMIISSYILLDNTVF-LNDYAFGIFKKLND 747 (978)
T ss_pred hhhhHHHHHHH--HHhc-ccccCHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHH
Confidence 33333 3321 1111 13333333 277888888887554443333333334544433332 22234688899999
Q ss_pred HHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHh--ccChhhhHHHHHHHHHHhccCCHHHHH
Q 010080 303 RLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL--KSEHRVLKKEAAWVLSNIAAGSVEHKQ 380 (518)
Q Consensus 303 lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL--~~~~~~i~~~a~~~Lsnl~~~~~~~~~ 380 (518)
+|. .-..+.....|+++..+...++ ...... ..+++|.+..-+ +.+.|.+-.+-..+++.+.-.+++...
T Consensus 748 ~l~-dvr~egl~avLkiveili~t~~-il~~~~------~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~m 819 (978)
T KOG1993|consen 748 LLD-DVRNEGLQAVLKIVEILIKTNP-ILGSLL------FSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFM 819 (978)
T ss_pred HHH-HhhHHHHHHHHHHHHHHHhhhH-HHHhhh------cchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHH
Confidence 885 4445566677888888776554 222222 235777665544 344567777777788888777777665
Q ss_pred HHHhC-CCHHHHH--------HHhcC-CChhHHHHHHHHHHHhcC
Q 010080 381 LIHSS-EALALLL--------HLLST-SPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 381 ~li~~-~~i~~Li--------~lL~~-~~~~v~~eA~~aL~nl~~ 415 (518)
.+.+. .-...++ .++.+ .+++-||--+.+++.+..
T Consensus 820 svlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~ 864 (978)
T KOG1993|consen 820 SVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLR 864 (978)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhc
Confidence 55432 2222333 22222 456677777777777754
No 326
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=46.41 E-value=28 Score=26.85 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=46.3
Q ss_pred HhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHH
Q 010080 292 VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS 369 (518)
Q Consensus 292 ~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Ls 369 (518)
.+..++.++..++....+.+++.-.+.|+.+++...... +.+| +..++..|-....+++..+..-|.-++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~----i~SG---W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN----IKSG---WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH----HHhc---cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 345667888887766678889999999999998665432 3343 4445555555555556666666655543
No 327
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.30 E-value=5.9e+02 Score=30.45 Aligned_cols=128 Identities=20% Similarity=0.180 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCChHHHHHhc----C-ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh
Q 010080 144 LEAAWCLTNIAAGKQEETKALL----P-ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM 218 (518)
Q Consensus 144 ~eA~~~L~nia~~~~~~~~~v~----~-~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll 218 (518)
..++-++++-++........+. + .+|.+.-...+.+..+++.....+|-+|....-+ .++ +| .+.+..++
T Consensus 814 ~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml 888 (1610)
T KOG1848|consen 814 VDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVFEML 888 (1610)
T ss_pred hhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHH
Confidence 4455555665554433333333 2 2232222222235677777777777777642211 111 12 33333333
Q ss_pred C----CC---ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHH---HHHHH
Q 010080 219 L----PN---KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEV---AWVVV 278 (518)
Q Consensus 219 ~----~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a---~~~L~ 278 (518)
. .. ..++.+.+.-+|.-++...-+..+.+.+ .+.+.++..+-. .+|-.+-..| +|.++
T Consensus 889 ~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci--~~lidtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 889 RSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI--LDLIDTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH--HHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 3 22 5678888888888887654333334433 477777777655 4454554444 45544
No 328
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=46.12 E-value=3e+02 Score=27.00 Aligned_cols=199 Identities=18% Similarity=0.230 Sum_probs=115.9
Q ss_pred hHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC---cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHH
Q 010080 289 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS---STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA 365 (518)
Q Consensus 289 ~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~---~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~ 365 (518)
+.+.++|++..++..+. ..+.+.+..++.+..|+....- .-+...+.+ +..++..|+.- ..+ ..+.+
T Consensus 73 qef~~~~~l~~lI~~l~-~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t----~~e~~~~lv~~--~~~---~~~ia 142 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLP-KLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET----NPEILDNLVKG--YEN---TPEIA 142 (342)
T ss_pred HHHHhCCchHHHHHhhh-cccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh----CHHHHHHHHhh--hcc---chHHH
Confidence 45667899999998884 5677778888888888864432 112222221 22334443333 111 23344
Q ss_pred HHHHHhccC---CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC---c
Q 010080 366 WVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG---C 439 (518)
Q Consensus 366 ~~Lsnl~~~---~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g---~ 439 (518)
.+-||+... .+...+.+....-+......++.+.+++-..|..+...+.... ...+-.....+ .
T Consensus 143 L~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~H----------k~~vaEfl~~n~d~f 212 (342)
T KOG1566|consen 143 LTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRH----------KSVVAEFLIRNYDNF 212 (342)
T ss_pred HHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHh----------HHHHHHHHHhChhhh
Confidence 444554332 2334455667777888888888899999999888888876532 11222222222 2
Q ss_pred hHH-HHHhhccCCHHHHHHHHHHHHHHHccCCCC-cchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 010080 440 LSG-FIDLVRSADIEAARLGLQFMELVLRGMPNH-EGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD 507 (518)
Q Consensus 440 i~~-L~~lL~~~d~~~~~~~l~~l~~il~~~~~~-~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~ 507 (518)
.+. --.++.+.+.-+...++.++.-++..-+|. ...+.+.+...+..+-.|...+...|+-.|.++-.
T Consensus 213 f~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFK 282 (342)
T KOG1566|consen 213 FAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFK 282 (342)
T ss_pred HHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHH
Confidence 222 444666777777778888887777654432 12233444445556666777777777766666554
No 329
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=45.20 E-value=1.9e+02 Score=24.48 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=54.1
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccCC-HHHHHHHHhCCCHHHHHHHhcCC-Chh---HHHHHHHHHHHhcC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLSTS-PFD---IKKEVAYVLGNLCV 415 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~-~~~~~~li~~~~i~~Li~lL~~~-~~~---v~~eA~~aL~nl~~ 415 (518)
.++..|..-|.+.++.++..|+.+|--+...+ +.....+....++..|..++.+. ... |++.+...|..-..
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 47788889999999999999999998888765 44445555667889999988543 333 78887777766544
No 330
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=44.46 E-value=28 Score=28.15 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=32.6
Q ss_pred HHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHH
Q 010080 185 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTV 226 (518)
Q Consensus 185 ~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~ 226 (518)
...+..|..++. .|++-..+++.|+++.|+.||.+++..+.
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 445566777777 66777888899999999999999876654
No 331
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=43.82 E-value=3.2e+02 Score=26.72 Aligned_cols=126 Identities=19% Similarity=0.216 Sum_probs=84.6
Q ss_pred HHHHhcCChhHHHhhhCC-----------------------CChhHHHHHHHHHHHhhcCCCCC----------------
Q 010080 203 NVLLSQGALPPLARMMLP-----------------------NKGSTVRTAAWALSNLIKGPDPK---------------- 243 (518)
Q Consensus 203 ~~~~~~g~i~~L~~ll~~-----------------------~~~~~~~~a~~~L~nL~~~~~~~---------------- 243 (518)
..+.+.|.||.|-.+++. ++..++.+-...+.++|......
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 456778888888887741 11247889999999999732111
Q ss_pred ---chhhHHHhhchHHHHHHHhcc--CChhHHHHHHHHHHHhhcCCch--hhhHHHhcCchHHHHHHHccCCC--ccchh
Q 010080 244 ---PATELIKVDGLLDAILRHLKR--ADEELTTEVAWVVVYLSALSNV--ATSLLVKSGVLQLLVERLATSNS--LQLLI 314 (518)
Q Consensus 244 ---~~~~~i~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~L~~~~~~--~~~~~~~~g~~~~Lv~lL~~~~~--~~v~~ 314 (518)
.....-...|.+..+++.+.. .+...+...+.|+-...++.+. ....+.+.|+++.++.-+.+... ..+..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 000011245677777777763 3556788888888888887666 23466789999999987753332 24666
Q ss_pred hhhhhhhhhhcCCC
Q 010080 315 PVLRSLGNLVAGDS 328 (518)
Q Consensus 315 ~al~~L~nl~~~~~ 328 (518)
...-.||-+..++.
T Consensus 163 ~~FDLLGELiK~n~ 176 (303)
T PF12463_consen 163 SNFDLLGELIKFNR 176 (303)
T ss_pred HHHHHHHHHHCCCH
Confidence 77888898887763
No 332
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=43.75 E-value=3.9e+02 Score=27.70 Aligned_cols=65 Identities=11% Similarity=0.072 Sum_probs=32.3
Q ss_pred hhcCCCCHHHHHHHHHHHHhhhCCChh-hH--HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080 174 HLGEKSSSPVAEQCAWALGNVAGEGEE-FR--NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 238 (518)
Q Consensus 174 lL~~~~~~~v~~~a~~~L~nla~d~~~-~r--~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 238 (518)
...+++|+..-.....+++.+...... .. -.-++...+|++..+|+.+-.+..-.+.-.|+.|.+
T Consensus 79 v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle 146 (435)
T PF03378_consen 79 VSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLE 146 (435)
T ss_dssp HHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHH
T ss_pred HHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666655555555554332111 11 123455677888888887655555555555555554
No 333
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=43.62 E-value=3.6e+02 Score=27.25 Aligned_cols=127 Identities=13% Similarity=0.051 Sum_probs=73.8
Q ss_pred ccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc------cChhhhHHHHHHHHHHhccCCHH------
Q 010080 310 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK------SEHRVLKKEAAWVLSNIAAGSVE------ 377 (518)
Q Consensus 310 ~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~------~~~~~i~~~a~~~Lsnl~~~~~~------ 377 (518)
..-+..|+..+..++..-..+...+ +...+..++. +.++.-+..|+..++.|+.....
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i----------~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt 294 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSI----------LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVT 294 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHH----------HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcc
Confidence 3445677777777775433322211 2233444443 33557778888999999865421
Q ss_pred ------HHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC
Q 010080 378 ------HKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD 451 (518)
Q Consensus 378 ------~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d 451 (518)
++..+....++|-|. --.+..+-++..|++.+...-..-+ .++. .++++.++..|.+++
T Consensus 295 ~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~---------~~~l-----~~~~~~l~~~L~~~~ 359 (370)
T PF08506_consen 295 QTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP---------KEQL-----LQIFPLLVNHLQSSS 359 (370)
T ss_dssp -B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----------HHHH-----HHHHHHHHHHTTSS-
T ss_pred cccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC---------HHHH-----HHHHHHHHHHhCCCC
Confidence 244555556777766 2224456788999999998866421 1222 237899999999888
Q ss_pred HHHHHHHHHH
Q 010080 452 IEAARLGLQF 461 (518)
Q Consensus 452 ~~~~~~~l~~ 461 (518)
.-+...|..+
T Consensus 360 ~vv~tyAA~~ 369 (370)
T PF08506_consen 360 YVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHHH
T ss_pred cchhhhhhhh
Confidence 7766555443
No 334
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=42.97 E-value=1.9e+02 Score=23.70 Aligned_cols=102 Identities=13% Similarity=0.208 Sum_probs=59.9
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHH
Q 010080 387 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL 466 (518)
Q Consensus 387 ~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il 466 (518)
+++.|+..|.+.+.+|...|..+|...|... +....++... |.| +.|...-. -.+..++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-----------~~le~~v~~~--p~l-~~L~~~g~-------~Ll~~~l 67 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-----------EYLEYLVSLR--PSL-DHLGDIGS-------PLLLRFL 67 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-----------hhHHHHHHcC--cHH-HHHHHcCH-------HHHHHHH
Confidence 5788999999999999999999999998752 2345554432 222 22221111 1222333
Q ss_pred ccCCCCcchhHHHhhchHH-HHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080 467 RGMPNHEGTKLVEREDGID-AMERFQFHENEDLRNMANGLVDKYFGE 512 (518)
Q Consensus 467 ~~~~~~~~~~~ie~~ggl~-~l~~L~~~~~~~i~~~a~~il~~~f~~ 512 (518)
.. ..+-..+.+.|.++ -++.-....|.+=..+....+...|..
T Consensus 68 S~---~~Gf~~L~~~~~v~~El~~W~~~~N~~YV~~vE~~l~~~~~~ 111 (115)
T PF14663_consen 68 ST---PSGFRYLNEIGYVEKELDKWFESFNKEYVKLVEEFLSEALTN 111 (115)
T ss_pred cc---hHHHHHhcchhHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Confidence 21 11223444555555 466667777777666666666665544
No 335
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=42.73 E-value=1e+02 Score=34.75 Aligned_cols=126 Identities=8% Similarity=0.187 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHH
Q 010080 269 LTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV 348 (518)
Q Consensus 269 v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~ 348 (518)
++..+.-+|+++|-.++.-. ...+|.|+.-|..+....++....-+++-+|..-. .+++ ..+|.
T Consensus 947 vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~d-------~YiP~ 1010 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMTD-------RYIPM 1010 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHHH-------HhhHH
Confidence 55666677888886544322 23568888888655566666677777777774432 2333 47899
Q ss_pred HHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCC-HHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 349 LVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA-LALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 349 L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~-i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
+..-|..+++-||+.+...|++|.... .+--.|. +-.++-.|-+.+++++.-|-+.++.+..
T Consensus 1011 I~~~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1011 IAASLCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997532 1211221 2222223334455677766666666644
No 336
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=42.65 E-value=8.4 Score=35.91 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=21.8
Q ss_pred HhhhHHHHHHHhhHhhHHHHHHhhh
Q 010080 23 AQRRRQNAVTVGKERRESLVRAKRL 47 (518)
Q Consensus 23 ~~rr~~~~~~~rk~~r~~~l~~kR~ 47 (518)
..-||.++.++|++||++.+..||.
T Consensus 9 ~~~r~~~~~~~~~~k~~~~~~~~r~ 33 (225)
T cd01882 9 AAARQFQRTADIEEKKLHVPVVDRT 33 (225)
T ss_pred HHHHHHHHHHHhhhccccceeeccc
Confidence 4567788899999999999999995
No 337
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=42.26 E-value=1.1e+02 Score=26.01 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=46.9
Q ss_pred chHHHHHhhc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHH-HHHHhcC---CCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA-MERFQFH---ENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~-~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~-l~~L~~~---~~~~i~~~a~~il~~~ 509 (518)
++..|..=|. +.++.++..+|..|+.+.+.|+. .+...+-.-+.++. |..+... ...+|+++...++..+
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~-~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGH-RFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAW 113 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHH
Confidence 4555666565 46899999999999999987753 22233333355655 6666542 3568999998888865
No 338
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=42.23 E-value=35 Score=19.67 Aligned_cols=14 Identities=29% Similarity=0.473 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHhcc
Q 010080 360 LKKEAAWVLSNIAA 373 (518)
Q Consensus 360 i~~~a~~~Lsnl~~ 373 (518)
||..|+|+|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 58899999999943
No 339
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=41.96 E-value=1.5e+02 Score=31.22 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=46.7
Q ss_pred CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC-------------hhhHHHHHhcCChhHHHhhhCC-CChhHHHHHHH
Q 010080 166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG-------------EEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAW 231 (518)
Q Consensus 166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~-------------~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~ 231 (518)
+.|+.|+.+|....+.+++..|+..|..|..-+ .+.-..+.....+..|+..+-. .......+++.
T Consensus 62 ~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~ 141 (475)
T PF04499_consen 62 NLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVS 141 (475)
T ss_pred CHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHH
Confidence 589999999986567889999998888775422 1233344445556666654432 33555566666
Q ss_pred HHHHhhcC
Q 010080 232 ALSNLIKG 239 (518)
Q Consensus 232 ~L~nL~~~ 239 (518)
.+..|.+.
T Consensus 142 IlieLIRk 149 (475)
T PF04499_consen 142 ILIELIRK 149 (475)
T ss_pred HHHHHHHh
Confidence 66666543
No 340
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=40.68 E-value=4.4e+02 Score=27.39 Aligned_cols=108 Identities=22% Similarity=0.255 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHh-c-CChHHHHHh
Q 010080 97 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKAL-L-PALPLLIAH 174 (518)
Q Consensus 97 ~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v-~-~~v~~Lv~l 174 (518)
..++.|.+.|-.+++.-..+....+.+ +.|+.+|++.+ ...+.-|+.++..++.........- . ...+.|...
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 456778888888777755454434433 37889998765 3344568999999986543221111 1 245566677
Q ss_pred hcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCC
Q 010080 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGA 210 (518)
Q Consensus 175 L~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~ 210 (518)
|... ....-...+..+..+-.++..+-..+.+.|.
T Consensus 177 L~~~-~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 177 LENP-EPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred HcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7642 2222233333444454445555566666676
No 341
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=39.13 E-value=58 Score=31.72 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=42.5
Q ss_pred hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc--------------hhhhHHHhcCchHHHHHHHc
Q 010080 251 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN--------------VATSLLVKSGVLQLLVERLA 305 (518)
Q Consensus 251 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~--------------~~~~~~~~~g~~~~Lv~lL~ 305 (518)
....+..++.-|.+.+...+..++.+|.|++.|.- .+...+.+.|+++.++.+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45778888888889999999999999999998742 12234556788888888774
No 342
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.76 E-value=5.8e+02 Score=28.21 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=28.5
Q ss_pred ChhhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhc
Q 010080 198 GEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIK 238 (518)
Q Consensus 198 ~~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~ 238 (518)
.+.+|..+..+|++..++..+. +.....+..+..+|.+|..
T Consensus 364 ~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs 405 (865)
T KOG2152|consen 364 MPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLS 405 (865)
T ss_pred ChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHh
Confidence 5799999999999999998665 3334444444445555543
No 343
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=37.99 E-value=86 Score=30.52 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=45.8
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCC-chh---HHHHHHHHHhcCchHHHHHhhcc
Q 010080 386 EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGK-PKL---IQEHLVSLVGRGCLSGFIDLVRS 449 (518)
Q Consensus 386 ~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~-~~~---~~~~~~~l~~~g~i~~L~~lL~~ 449 (518)
..+..+++-|.+++...|-+|+.+|..++.+.-....+ .++ +..++..|.+.|++++|+.+|..
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45667889999999999999999999999874211111 111 12334456688999999999874
No 344
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=37.68 E-value=3.6e+02 Score=25.54 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=39.9
Q ss_pred ChHHHHHhhcCCCCH-------HHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhh
Q 010080 167 ALPLLIAHLGEKSSS-------PVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLI 237 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~-------~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~ 237 (518)
+.|.++++++.+++. -+.+....+|..+ -.|-+++|..++.++ +.-++.+|+.+|..+.
T Consensus 74 A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~ 141 (249)
T PF06685_consen 74 ALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISALAFLV 141 (249)
T ss_pred hHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 689999999763321 1222222233332 346688888888876 4667888899999988
Q ss_pred cC
Q 010080 238 KG 239 (518)
Q Consensus 238 ~~ 239 (518)
..
T Consensus 142 ~~ 143 (249)
T PF06685_consen 142 HE 143 (249)
T ss_pred Hc
Confidence 65
No 345
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=37.39 E-value=68 Score=25.95 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhh
Q 010080 270 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP 315 (518)
Q Consensus 270 ~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~ 315 (518)
+......++.|+.. ++....+++.|+++.|+.+| .|.+..+...
T Consensus 63 Ld~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL-~HeN~DIai~ 106 (108)
T PF08216_consen 63 LDEEIKKLSVLATA-PELYPELVELGAVPSLLGLL-SHENTDIAID 106 (108)
T ss_pred HHHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHH-CCCCcceehc
Confidence 44567777888874 46778888999999999999 5888776543
No 346
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=36.83 E-value=5e+02 Score=26.96 Aligned_cols=105 Identities=10% Similarity=0.020 Sum_probs=57.0
Q ss_pred CHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHH---HH--HHHHH
Q 010080 387 ALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE---AA--RLGLQ 460 (518)
Q Consensus 387 ~i~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~---~~--~~~l~ 460 (518)
+|.+|++-++. .+..+|+.++.+|..+..... .++|.+ ...+++-||.+|..+..+ +- ...-+
T Consensus 313 iIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~--~rkp~P---------ndKIvkNLc~flC~D~seTP~~~~~~~~~~ 381 (441)
T PF12054_consen 313 IIRPLMDSIKREENELLQQRSAESLARLIQLCV--DRKPCP---------NDKIVKNLCTFLCVDTSETPEFSHNVDKKD 381 (441)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh--CCCCCC---------cHHHHHHHhhhhccCcccCCCCCCCcchhh
Confidence 45677777754 568899999999988865443 222222 123577788888543322 21 11112
Q ss_pred HHHHHHccCC-----C------CcchhHHHhhchHHHHHHHhcCCCHHHHHHH
Q 010080 461 FMELVLRGMP-----N------HEGTKLVEREDGIDAMERFQFHENEDLRNMA 502 (518)
Q Consensus 461 ~l~~il~~~~-----~------~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a 502 (518)
++..+-+... + ......|..-|+...|+.|..+-.+++.++-
T Consensus 382 gILsl~k~~~~~~~~~~~~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf~~l 434 (441)
T PF12054_consen 382 GILSLRKEEDKADHADAASEEREQKEARIQRRGAELALEQLAKRFGSSLFEKL 434 (441)
T ss_pred cccchhhhcccccccccccchhhhhhhHHHhcCHHHHHHHHHHHHhHHHHHhh
Confidence 2222221110 0 0112345566787788877776666666554
No 347
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=36.34 E-value=96 Score=23.86 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=46.9
Q ss_pred HhcCchHHHHHhhc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHH----HHHHhcCCCHHHHHHHHHHHHh
Q 010080 435 VGRGCLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA----MERFQFHENEDLRNMANGLVDK 508 (518)
Q Consensus 435 ~~~g~i~~L~~lL~-~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~----l~~L~~~~~~~i~~~a~~il~~ 508 (518)
.+..++.||..++. ..+.+++...++++..++..... .+ ..| +.. |..-..++++++...|..+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~-----~i-~SG-W~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE-----NI-KSG-WKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH-----HH-Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 45568899999864 46889999999999999864322 12 233 333 3333566788999999888763
No 348
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.23 E-value=5.5e+02 Score=27.30 Aligned_cols=136 Identities=21% Similarity=0.261 Sum_probs=78.9
Q ss_pred HHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccC-------CCccchhhhhhhhhhhhcCCCcccc
Q 010080 260 RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-------NSLQLLIPVLRSLGNLVAGDSSTIS 332 (518)
Q Consensus 260 ~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~-------~~~~v~~~al~~L~nl~~~~~~~~~ 332 (518)
+.+...|+..+..|+-+|. .+..++. .+|.++.++... .+...+...++.+..+..+..-...
T Consensus 214 ~a~~g~~~~~r~eAL~sL~-----TDsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~le 283 (576)
T KOG2549|consen 214 EACTGSDEPLRQEALQSLE-----TDSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLE 283 (576)
T ss_pred HHHhcCCHHHHHHHHHhhc-----cCccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchh
Confidence 3333455555666555543 2223332 356666666422 2344556666777766655544444
Q ss_pred eeeccCCCchhhhHHHHHHHhcc----------ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--CCh
Q 010080 333 DVLVPGHGITDQVIAVLVKCLKS----------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPF 400 (518)
Q Consensus 333 ~~i~~G~~~~~~~l~~L~~lL~~----------~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~ 400 (518)
..+ +.++|.++.++-+ .++.+|..|+..++.|+......-+. +...++..+...+.+ ..+
T Consensus 284 pYl-------h~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 284 PYL-------HQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred hHH-------HHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCc
Confidence 333 4578877776633 35679999999999998765444443 333466667777644 345
Q ss_pred hHHHHHHHHHHHh
Q 010080 401 DIKKEVAYVLGNL 413 (518)
Q Consensus 401 ~v~~eA~~aL~nl 413 (518)
....-|+..|.-+
T Consensus 356 st~YGai~gL~~l 368 (576)
T KOG2549|consen 356 STHYGAIAGLSEL 368 (576)
T ss_pred hhhhhHHHHHHHh
Confidence 5666666666665
No 349
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=34.15 E-value=2.6e+02 Score=23.23 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHH
Q 010080 96 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCL 150 (518)
Q Consensus 96 ~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L 150 (518)
.+....++.++..+++ -.+...+.+.+.++.+.++|..++ .+..|+.||
T Consensus 100 ~~~~~~~L~~l~s~i~---~~~~~~i~~~~~l~~~~~~l~~~~---~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWIS---WIPIELIINSNLLNLIFQLLQSPE---LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTT---TS-HHHHHSSSHHHHHHHHTTSCC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---hCCHHHhccHHHHHHHHHHcCCHH---HHHHHHHhC
Confidence 6778888999999887 355677888899999999997554 344576664
No 350
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.40 E-value=7.4e+02 Score=27.86 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHH-HhcCCCChHHHHH-HHHHHHHHhcCChHH------HHHh
Q 010080 93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQ-CLAFGSPDEQLLE-AAWCLTNIAAGKQEE------TKAL 164 (518)
Q Consensus 93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~-~L~~~~~~~~~~e-A~~~L~nia~~~~~~------~~~v 164 (518)
..|.+.+..+...|-+-|+..-..++..++.. -+..++. +-+.++.+....+ |.+.++.+|...... +..+
T Consensus 372 GsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~l 450 (960)
T KOG1992|consen 372 GSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNEL 450 (960)
T ss_pred cCCcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccc
Confidence 56777777777777776776555666666643 3344443 4444443333333 777777777442211 2222
Q ss_pred cCChHHHH----HhhcC---CCCHHHHHHHHH---HHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHH
Q 010080 165 LPALPLLI----AHLGE---KSSSPVAEQCAW---ALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS 234 (518)
Q Consensus 165 ~~~v~~Lv----~lL~~---~~~~~v~~~a~~---~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 234 (518)
++.+..+. ..|.+ .+.+-++..++. +..|- -....++. .+|.++++++.+..-+-..|+.++-
T Consensus 451 vdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q-----l~~~~lm~--~~p~li~~L~a~s~vvhsYAA~aiE 523 (960)
T KOG1992|consen 451 VDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ-----LGKEHLMA--LLPRLIRFLEAESRVVHSYAAIAIE 523 (960)
T ss_pred ccHHHHHHHHhhHHhccCccccccchhhcccceeeeeccc-----CChHHHHH--HHHHHHHhccCcchHHHHHHHHHHH
Confidence 33222222 22333 123444433332 22221 12223333 5888999999888888888888887
Q ss_pred Hhhc
Q 010080 235 NLIK 238 (518)
Q Consensus 235 nL~~ 238 (518)
.+-.
T Consensus 524 kil~ 527 (960)
T KOG1992|consen 524 KLLT 527 (960)
T ss_pred hccc
Confidence 6543
No 351
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.10 E-value=3.5e+02 Score=27.42 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=76.0
Q ss_pred HHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCch
Q 010080 346 IAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPK 425 (518)
Q Consensus 346 l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~ 425 (518)
+.-|+.-+.|.+..+|++|..-|-.+....+...+.-.. .+++.+..+..+.+..+|.....++-++..... |
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~-~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~-----~- 132 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLY-ALLQKLRELILDDDSLVRDALYQLLDSLILPAC-----K- 132 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHH-HHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc-----h-
Confidence 556777789999999999999888876654444432222 367778888888888999988888877654311 1
Q ss_pred hHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC
Q 010080 426 LIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN 471 (518)
Q Consensus 426 ~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~ 471 (518)
++...++ .=.++.+...+..-.++++..++..+..++..++.
T Consensus 133 ---e~~sp~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 133 ---EDQSPMV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred ---hhhcchH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 1111110 01233344445556788888889999988887754
No 352
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=32.90 E-value=3.2e+02 Score=23.57 Aligned_cols=125 Identities=11% Similarity=0.133 Sum_probs=76.8
Q ss_pred chhhHHHhhchHHHHHHHhcc-CChhHHHHHHHHHHHhhcC--CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhh
Q 010080 244 PATELIKVDGLLDAILRHLKR-ADEELTTEVAWVVVYLSAL--SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 320 (518)
Q Consensus 244 ~~~~~i~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L 320 (518)
..++...+...+..+++++.. ....+....+-+++-|..+ ++...-.+.+.+.+..++..=-+-.+.++...=...|
T Consensus 17 ~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsfL 96 (149)
T PF09758_consen 17 SFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISFL 96 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 467777788999999999987 4557777777777766653 3445666777777777765432344666665444444
Q ss_pred hhhhcC-CCcccceeeccCCCchhhhHHHH---HHHhccChhhhHHHHHHHHHHhc
Q 010080 321 GNLVAG-DSSTISDVLVPGHGITDQVIAVL---VKCLKSEHRVLKKEAAWVLSNIA 372 (518)
Q Consensus 321 ~nl~~~-~~~~~~~~i~~G~~~~~~~l~~L---~~lL~~~~~~i~~~a~~~Lsnl~ 372 (518)
..++.. ++...+...+.. .+-.|.+ +++..|++..+|..+-.++-|+.
T Consensus 97 K~lSlkln~~tv~fffn~~----~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 97 KTLSLKLNKDTVQFFFNER----NDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHhhcCCCceeEeEecC----CCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 444322 222333344321 2234443 56678888888887777666653
No 353
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=32.35 E-value=1.1e+02 Score=26.32 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 361 ~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
+..|...|+.+-.|. -+.+|+.+|.+.+..+..+|+.+|.|...
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 345555555554443 37889999999999999999999988754
No 354
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.20 E-value=1.1e+02 Score=31.99 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=50.8
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHH-hcC-CCHHHHHHHHHHHHhhc
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFH-ENEDLRNMANGLVDKYF 510 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L-~~~-~~~~i~~~a~~il~~~f 510 (518)
++.+|..-|.+.++.++..+|.+|+.+++.|.. .+...|-+-+.++.+..+ .++ .+..|++++..+|+.+.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~-~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGY-SFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 566777778888889999999999999887754 223334444555544333 455 67889999999998753
No 355
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=31.94 E-value=1.6e+02 Score=26.64 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=66.7
Q ss_pred hHHHHHhhcCCCCHHHHHHH-HHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 168 LPLLIAHLGEKSSSPVAEQC-AWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a-~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
++.+-.++..-++..+.... ..+++.+..+. ....+.+...+.+++.-.+|.++-++...... ..
T Consensus 87 ~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~---------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~- 152 (213)
T PF08713_consen 87 LELLEKWLPDIDNWATCDSLCSKLLGPLLKKH---------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----ED- 152 (213)
T ss_dssp HHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH---------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CH-
T ss_pred HHHHHHHhccCCcchhhhHHHHHHHHHHHHhh---------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cC-
Confidence 34444555544666666655 44555543211 23355566677788888888887666555433 11
Q ss_pred hHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhc
Q 010080 247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKS 294 (518)
Q Consensus 247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 294 (518)
....+..+..++.+++.-|+..+.|+|..++..+++.....+..
T Consensus 153 ----~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 153 ----FDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp ----HHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 12455566666778888999999999999998766555544443
No 356
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=31.87 E-value=1.1e+02 Score=26.39 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=20.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHc
Q 010080 440 LSGFIDLVRSADIEAARLGLQFMELVLR 467 (518)
Q Consensus 440 i~~L~~lL~~~d~~~~~~~l~~l~~il~ 467 (518)
+.+|+++|.++|..+...+.++|.+.+-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 7899999999999999999999998764
No 357
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=31.76 E-value=1e+02 Score=25.22 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=31.0
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHh
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLS 207 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~ 207 (518)
+++.|++.|.. ++.+|...|+.+|...|.+. .+-..++.
T Consensus 9 ~i~lLv~QL~D-~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYD-PSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 58889999987 68899999999999999865 44444443
No 358
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=31.62 E-value=5.2e+02 Score=25.55 Aligned_cols=203 Identities=18% Similarity=0.115 Sum_probs=101.5
Q ss_pred hcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhc
Q 010080 293 KSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 372 (518)
Q Consensus 293 ~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~ 372 (518)
...++..+..++.+..++..+...+.+++.=...-+ ......++..+..=+...++.+|+.-+..++++.
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~----------~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~ 89 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS----------SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEAL 89 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC----------cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 345566777777666777777777777765442221 0113467888888888888889988887787776
Q ss_pred c--CCHHHHHHHHhCCCHHHHHHHhc----CCChhHH---HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHH
Q 010080 373 A--GSVEHKQLIHSSEALALLLHLLS----TSPFDIK---KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGF 443 (518)
Q Consensus 373 ~--~~~~~~~~li~~~~i~~Li~lL~----~~~~~v~---~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L 443 (518)
. .+..... ++. .++|.|++.++ ++-...+ -.+++++.-++.... .....-......+. .+-=+.+
T Consensus 90 ~~~~~~~~~~-~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~---~~~~~~~~~~~~l~-~~~kps~ 163 (339)
T PF12074_consen 90 WESPNSDSLK-FAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKL---DKIDSKNISFWSLA-LDPKPSF 163 (339)
T ss_pred hhccCchHHH-HHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccc---hhhhhhhhhhhhhc-cCCCcch
Confidence 4 1111222 222 26777777773 3322222 123333333211100 00000000000000 0000110
Q ss_pred H---Hhhcc-CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC--CHHHHHHHHHHHHhhcCcc
Q 010080 444 I---DLVRS-ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDKYFGED 513 (518)
Q Consensus 444 ~---~lL~~-~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~--~~~i~~~a~~il~~~f~~~ 513 (518)
+ .++.. .+++-....+++++.++........... . ..--+.+..+.-|. ..++++.|...+.+.|...
T Consensus 164 ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~-~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 164 LLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-S-SAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASN 237 (339)
T ss_pred hcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-H-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 0 12222 4555566777888888765432111111 1 11123444555555 7889998888888776544
No 359
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=31.53 E-value=1.1e+02 Score=25.43 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=42.5
Q ss_pred hHHHHHhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC------CHHHHHHHHHHHHhh
Q 010080 440 LSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE------NEDLRNMANGLVDKY 509 (518)
Q Consensus 440 i~~L~~lL~~--~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~------~~~i~~~a~~il~~~ 509 (518)
+..|..-|.. .....+.++|..|+.++..+++.....+-....-+..|.+++.-+ ...|+++|..|++-.
T Consensus 39 m~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 39 MSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGKDQGINVREKAKEILELL 116 (123)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCCCCCchhHHHHHHHHHHHHHh
Confidence 4445555544 367788899999999998876421112222223444444444322 257999999998744
No 360
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=30.51 E-value=3e+02 Score=27.44 Aligned_cols=72 Identities=28% Similarity=0.439 Sum_probs=45.5
Q ss_pred chHHHHHHHcc-----CC-CccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc----------Chhh
Q 010080 296 VLQLLVERLAT-----SN-SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS----------EHRV 359 (518)
Q Consensus 296 ~~~~Lv~lL~~-----~~-~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~----------~~~~ 359 (518)
++|.++.++.. .. +...+...++.+..|.....-.....+ +.++|.++.++-. .+..
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Yl-------h~Lip~vltclv~~~l~~~~~~~~h~~ 283 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYL-------HQLIPSVLTCLVAKQLCSRPPDDNHWA 283 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhH-------HHHHHHHHHHhhhHhhcCCCCCchHHH
Confidence 45666665541 11 344556667777777766654444444 4688888877722 3458
Q ss_pred hHHHHHHHHHHhccC
Q 010080 360 LKKEAAWVLSNIAAG 374 (518)
Q Consensus 360 i~~~a~~~Lsnl~~~ 374 (518)
+|..|+.+++.|+..
T Consensus 284 LRd~AA~ll~~i~~~ 298 (343)
T cd08050 284 LRDYAARLLAQICRK 298 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888753
No 361
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=30.33 E-value=1.3e+02 Score=25.21 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=43.9
Q ss_pred hhHHHHHHHhccCh----hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHH
Q 010080 344 QVIAVLVKCLKSEH----RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 410 (518)
Q Consensus 344 ~~l~~L~~lL~~~~----~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL 410 (518)
.++..+.+++.... ..+...+..++......- ....+.+.++++.+.++|.+++ ++..|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 35566666664432 677888888998887643 3456777889999999996655 477777664
No 362
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=29.01 E-value=3.2e+02 Score=22.27 Aligned_cols=67 Identities=24% Similarity=0.267 Sum_probs=43.7
Q ss_pred hhHHHHHHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh-cCCChhH-HHHHHHHHHHhcCC
Q 010080 344 QVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDI-KKEVAYVLGNLCVS 416 (518)
Q Consensus 344 ~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v-~~eA~~aL~nl~~~ 416 (518)
.++|.+...|. +..++.+..+.-+++.++...+- -.. ++..+++.+ ++..... .+.+..+|..++..
T Consensus 6 ~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L-~~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 6 RLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL-SDE-----VLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC-cHH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 47888888888 66789999999999999865321 111 233333333 3332222 58899999999864
No 363
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.90 E-value=1.4e+02 Score=30.79 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=66.4
Q ss_pred CchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC
Q 010080 295 GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG 374 (518)
Q Consensus 295 g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~ 374 (518)
|-+..|++-|.+++...+-..-+..|..++...+++.. .....|+.++.+++..+|.-+..++-.+.-.
T Consensus 6 ~kl~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee~~-----------~~~~~L~~~~~~~h~~vR~l~lqii~elF~r 74 (661)
T KOG2374|consen 6 GKLIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEEVR-----------LSSQTLMELMRHNHSQVRYLTLQIIDELFMR 74 (661)
T ss_pred hHHHHHHHHHhhcCCcccChHHHHHHHHHHhccHHHHH-----------HHHHHHHHHHhhcCchHHHHHHHHHHHHHHh
Confidence 34566777776677777766778899999988877632 4778999999999999999999999999887
Q ss_pred CHHHHHHHHhCCCHHHHHHHh
Q 010080 375 SVEHKQLIHSSEALALLLHLL 395 (518)
Q Consensus 375 ~~~~~~~li~~~~i~~Li~lL 395 (518)
++.....+++. +..++.+.
T Consensus 75 s~~FR~lii~n--~~efLeL~ 93 (661)
T KOG2374|consen 75 SKLFRTLIIEN--LDEFLELS 93 (661)
T ss_pred hHHHHHHHHhC--HHHHHHHh
Confidence 77666666653 44444444
No 364
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=28.86 E-value=85 Score=20.42 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=19.7
Q ss_pred hhhHHHHHHHhccChhhhHHHHHHH
Q 010080 343 DQVIAVLVKCLKSEHRVLKKEAAWV 367 (518)
Q Consensus 343 ~~~l~~L~~lL~~~~~~i~~~a~~~ 367 (518)
..+...+..-+..+++.+|+.|.-+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3577888888889999999887644
No 365
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=27.82 E-value=8.9e+02 Score=27.04 Aligned_cols=114 Identities=20% Similarity=0.148 Sum_probs=63.5
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHH
Q 010080 387 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL 466 (518)
Q Consensus 387 ~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il 466 (518)
+...+...+.+++...-+....++.+++.-......+ ...-+++-..-.+..-..+...+.++|+.+.
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~------------~~~~~~~~~~~~N~~~~~~~~~~~~il~rls 509 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK------------EKDELDPAKTQFNKSLGQITDLISQILERLS 509 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc------------cccCcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566667778888888888888886521100000 0001111111111111122333334444444
Q ss_pred ccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCcc
Q 010080 467 RGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGED 513 (518)
Q Consensus 467 ~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~ 513 (518)
...+. .-..++.+.+....+..+..|+++++|+.|..||...|+.+
T Consensus 510 ~~~~~-~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 510 DFDPS-HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred cCCHH-HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence 33221 12345556677788888999999999999999999999754
No 366
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=26.80 E-value=1.5e+02 Score=27.01 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=38.9
Q ss_pred hHHHHHhcCChhHHHhhhCCC---C---------------hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh
Q 010080 201 FRNVLLSQGALPPLARMMLPN---K---------------GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL 262 (518)
Q Consensus 201 ~r~~~~~~g~i~~L~~ll~~~---~---------------~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL 262 (518)
..+.+.+.|++..++.+|..+ . ..+.+.+...|..+|++. +.....+ ...++.+...+
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n--~~NQ~~l--~~~~~~l~~~~ 110 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGN--RENQKYL--FKHLDFLISIF 110 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT---HHHHHHH--HHHHH-----H
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhC--HHHHHHH--HHHHhHHHHHH
Confidence 344555667777777776521 1 367788888899999773 2222222 34455443333
Q ss_pred ccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc
Q 010080 263 KRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT 306 (518)
Q Consensus 263 ~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~ 306 (518)
.......-..+.-++..+..++.+-...+.+. .+..++.++..
T Consensus 111 ~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~ 153 (207)
T PF01365_consen 111 MQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRK 153 (207)
T ss_dssp HCCCH-TTHHHHHHHHHHHTT-----------------------
T ss_pred HHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHH
Confidence 32211111234445555666555555554433 37777777753
No 367
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.75 E-value=6.1e+02 Score=28.98 Aligned_cols=90 Identities=17% Similarity=0.229 Sum_probs=58.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH---hcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH-H
Q 010080 85 KSAVAYHGKGAMQKRVNALRELRRL---LSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE-E 160 (518)
Q Consensus 85 ~~~l~~~~s~~~~~~~~a~~~lr~l---ls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~-~ 160 (518)
-+.+..+.+.+...|++|+..|+.. |+...|..+-.+ ....|.+++.+..++ +....-|..++.+++....+ .
T Consensus 806 ~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv--hq~W~~vie~~~~k~-~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 806 GRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV--HQTWPSVIECLLCKD-PLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH--HhhhhHHHHHHhcCc-hHHHHHHHHHHHHHHHHhhhHH
Confidence 3344566788899999999988764 444444322222 457899999998766 44445599999999843322 2
Q ss_pred HHHhc-CChHHHHHhhcC
Q 010080 161 TKALL-PALPLLIAHLGE 177 (518)
Q Consensus 161 ~~~v~-~~v~~Lv~lL~~ 177 (518)
+..+. +.+|.+-.++..
T Consensus 883 ~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 33333 678887777654
No 368
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=26.23 E-value=1.3e+02 Score=27.38 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=47.0
Q ss_pred hHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080 297 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 376 (518)
Q Consensus 297 ~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~ 376 (518)
.+.+...+ .++++-++..++-++.......+ . ..++..+...+.+++..|++...|+|..++..++
T Consensus 122 ~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~~~------~-------~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 122 LELLEKWA-KSDNEWVRRAAIVMLLRYIRKED------F-------DELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HHHHHHHH-HCSSHHHHHHHHHCTTTHGGGCH------H-------HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHH-hCCcHHHHHHHHHHHHHHHHhcC------H-------HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 34444444 45555555555544433332210 1 2366666777788899999999999999999988
Q ss_pred HHHHHHHhC
Q 010080 377 EHKQLIHSS 385 (518)
Q Consensus 377 ~~~~~li~~ 385 (518)
+.....+..
T Consensus 188 ~~v~~~l~~ 196 (213)
T PF08713_consen 188 DEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776654
No 369
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=25.89 E-value=1.9e+02 Score=31.94 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=51.0
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHH
Q 010080 387 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL 466 (518)
Q Consensus 387 ~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il 466 (518)
++..|..+....=..|+..|+.++.+|..+ .|+ | +..++..|++-|..++..+-..|--.|..|+
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~------kPE----q-----E~~LL~~lVNKlGDpqnKiaskAsylL~~L~ 369 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTN------KPE----Q-----ENNLLVLLVNKLGDPQNKIASKASYLLEGLL 369 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhC------CcH----H-----HHHHHHHHHHhcCCcchhhhhhHHHHHHHHH
Confidence 566666666777788999999999999763 453 2 1234667777777777788888877888888
Q ss_pred ccCCC
Q 010080 467 RGMPN 471 (518)
Q Consensus 467 ~~~~~ 471 (518)
...|+
T Consensus 370 ~~HPn 374 (988)
T KOG2038|consen 370 AKHPN 374 (988)
T ss_pred hhCCc
Confidence 76665
No 370
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=25.60 E-value=7.4e+02 Score=25.39 Aligned_cols=123 Identities=14% Similarity=0.105 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--
Q 010080 144 LEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-- 221 (518)
Q Consensus 144 ~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-- 221 (518)
..++.++..|+++... +...++..+.-.+..||.|+...|+.+|+..++......+++.+...
T Consensus 89 ~~~ll~~A~ls~~e~s---------------l~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~e 153 (532)
T KOG4464|consen 89 CQKLLALAELSSNENS---------------LPTVADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFE 153 (532)
T ss_pred HHHHHHHHHhccccCC---------------CCcccchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5567777777765431 11124568888999999999999999999999998888888766421
Q ss_pred -----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC---------------ChhHHHHHHHHHHHhh
Q 010080 222 -----KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA---------------DEELTTEVAWVVVYLS 281 (518)
Q Consensus 222 -----~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~---------------d~~v~~~a~~~L~~L~ 281 (518)
+.++...-...+....+ +.....++...++++.+.+.+.+. +......++.++.|++
T Consensus 154 r~~~~~~~~~dlrLLflltale---~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt 230 (532)
T KOG4464|consen 154 RNFPKDSSIFDLRLLFLLTALE---TDHRSQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVT 230 (532)
T ss_pred hcCCccchhhHHHHHHHHHHhh---HHHHHHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhhee
Confidence 22222111111111111 122233555678888888887631 1135667777778887
Q ss_pred cCC
Q 010080 282 ALS 284 (518)
Q Consensus 282 ~~~ 284 (518)
..+
T Consensus 231 ~~~ 233 (532)
T KOG4464|consen 231 CDS 233 (532)
T ss_pred ecc
Confidence 643
No 371
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=24.37 E-value=5.2e+02 Score=25.33 Aligned_cols=81 Identities=14% Similarity=0.195 Sum_probs=59.1
Q ss_pred hcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC---ChhHHHHHHHHHHHhh
Q 010080 207 SQGALPPLARMMLPN--KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA---DEELTTEVAWVVVYLS 281 (518)
Q Consensus 207 ~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~L~ 281 (518)
..|.+..++..+..+ +...+-..+.|+-.+.|+.++.....++...|.++.++..+-++ +.++.....=.|+.|.
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 456777777766533 56677888889999999976534455677889999999887644 3468888888888888
Q ss_pred cCCchh
Q 010080 282 ALSNVA 287 (518)
Q Consensus 282 ~~~~~~ 287 (518)
.++...
T Consensus 173 K~n~~~ 178 (303)
T PF12463_consen 173 KFNRDA 178 (303)
T ss_pred CCCHHH
Confidence 765433
No 372
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=24.36 E-value=7.8e+02 Score=25.21 Aligned_cols=40 Identities=8% Similarity=-0.014 Sum_probs=30.8
Q ss_pred hhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080 199 EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 238 (518)
Q Consensus 199 ~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 238 (518)
+......+++..+-.|+.++.++++.-+...-.+|.++..
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIyg 206 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYG 206 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 3445556677788899999999998888877777777763
No 373
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=23.75 E-value=3.6e+02 Score=23.27 Aligned_cols=126 Identities=11% Similarity=0.109 Sum_probs=80.8
Q ss_pred CHHHHHHHHhCCCHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHh-hccCCH
Q 010080 375 SVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDL-VRSADI 452 (518)
Q Consensus 375 ~~~~~~~li~~~~i~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~l-L~~~d~ 452 (518)
+++..+.+++.+++..++++++. ....++.....+++-+..+-. +| ..+-++.+.+.+..++.. ++-.|.
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~----~~----~slyyllSnn~iN~iI~~~~d~~~e 86 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIR----SE----TSLYYLLSNNHINEIITYPFDFSDE 86 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcC----CC----cceEEEecchHHHHHHhcCCCCCcc
Confidence 45677788899999999999976 566788888877777665431 22 234678888888887774 555788
Q ss_pred HHHHHHHHHHHHHHccCCCCcchhHHHh----hchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080 453 EAARLGLQFMELVLRGMPNHEGTKLVER----EDGIDAMERFQFHENEDLRNMANGLVDK 508 (518)
Q Consensus 453 ~~~~~~l~~l~~il~~~~~~~~~~~ie~----~ggl~~l~~L~~~~~~~i~~~a~~il~~ 508 (518)
+++..-...|..|.-..........+.+ .--...=..+-+|++.=++..+..|+=.
T Consensus 87 e~l~yYIsfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Ln 146 (149)
T PF09758_consen 87 EVLSYYISFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLN 146 (149)
T ss_pred hhHHHHHHHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHh
Confidence 8888777777777544332211111111 1112222345678887777777666543
No 374
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.62 E-value=6e+02 Score=25.00 Aligned_cols=137 Identities=11% Similarity=0.123 Sum_probs=75.2
Q ss_pred chhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHH-Hhc---cChhhhH-HHHHHHHHHhcc----CCHHHHHHH
Q 010080 312 LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVK-CLK---SEHRVLK-KEAAWVLSNIAA----GSVEHKQLI 382 (518)
Q Consensus 312 v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~-lL~---~~~~~i~-~~a~~~Lsnl~~----~~~~~~~~l 382 (518)
++...++.+...+...++... +. ..++|+|+. +|. ...|..| -+...+++.|+. ...+.+..+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~-v~-------~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I 114 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEE-VA-------NNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQI 114 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHH-HH-------HHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHH-HH-------HHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHH
Confidence 445566666666554432221 22 357777666 332 2223222 334444444432 223445555
Q ss_pred HhCCCHHHHHHHhcC---CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc------CchHHHHHhhccCCHH
Q 010080 383 HSSEALALLLHLLST---SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR------GCLSGFIDLVRSADIE 453 (518)
Q Consensus 383 i~~~~i~~Li~lL~~---~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~------g~i~~L~~lL~~~d~~ 453 (518)
.++ ++.+.+.++.. .-|+.|..=-..|.+++.. ....+... -++..++--++..+++
T Consensus 115 ~~~-vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~-------------~f~~l~~lp~~~f~~~idsi~wg~kh~~~~ 180 (319)
T PF08767_consen 115 LEA-VFECTLPMINKDFEEYPEHRVNFFKLLRAINEH-------------CFPALLQLPPEQFKLVIDSIVWGFKHTNRE 180 (319)
T ss_dssp HHH-HHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH-------------HTHHHHHS-HHHHHHHHHHHHHHHTSSSHH
T ss_pred HHH-HHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHH-------------hHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 554 66677777754 2367787766666666542 11223222 2355666667778999
Q ss_pred HHHHHHHHHHHHHccCC
Q 010080 454 AARLGLQFMELVLRGMP 470 (518)
Q Consensus 454 ~~~~~l~~l~~il~~~~ 470 (518)
+...+|+++..++....
T Consensus 181 I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 181 ISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987554
No 375
>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=23.44 E-value=1.7e+02 Score=30.07 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=48.2
Q ss_pred CchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCC------------------cchhHHHhhchHH----HHHHHhcCCC
Q 010080 438 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNH------------------EGTKLVEREDGID----AMERFQFHEN 495 (518)
Q Consensus 438 g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~------------------~~~~~ie~~ggl~----~l~~L~~~~~ 495 (518)
..++.|..+.-...++.+..++.+|+|+++..++. +...--...|+++ .|+-||.|-+
T Consensus 355 sFlKrLaRlaL~APpeA~~~vipfI~Nll~rHp~c~~lvhr~~~~~~~~Dpfd~~EtDP~ks~ALeSSLWEL~~Lq~Hy~ 434 (505)
T KOG2154|consen 355 SFLKRLARLALEAPPEAIVIVIPFICNLLRRHPNCQPLVHRSHALSLYDDPFDNDETDPKKSGALESSLWELELLQTHYH 434 (505)
T ss_pred HHHHHHHHHhccCCcccchhhHHHHHHHHHhCCchhhhhcccccccCCCCCCCCCCCChhhhhhHHHHHHHHHHHHHhhc
Confidence 35566666655666777777788888888643320 1111223455555 3677899999
Q ss_pred HHHHHHHHHHHHhhcCcc
Q 010080 496 EDLRNMANGLVDKYFGED 513 (518)
Q Consensus 496 ~~i~~~a~~il~~~f~~~ 513 (518)
++|.++|.-+-..+.--+
T Consensus 435 p~Va~~A~~~~q~~~k~e 452 (505)
T KOG2154|consen 435 PEVAKAASFFNQSLYKPE 452 (505)
T ss_pred HHHHHHHHHHhccCcccc
Confidence 999998876665554333
No 376
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=22.81 E-value=1.2e+03 Score=26.92 Aligned_cols=122 Identities=15% Similarity=0.284 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhH
Q 010080 146 AAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGST 225 (518)
Q Consensus 146 A~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~ 225 (518)
+.-.|.++|-......+ ..+|.|++-|..+....++...+-+++.+|.. --++-.-.||.+..-|..+++-+
T Consensus 951 ~vvTlakmcLah~~LaK---r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~-----YTam~d~YiP~I~~~L~Dp~~iV 1022 (1529)
T KOG0413|consen 951 GVVTLAKMCLAHDRLAK---RLMPMLVKELEYNTAHAIRNNIVLAMGDICSS-----YTAMTDRYIPMIAASLCDPSVIV 1022 (1529)
T ss_pred HHHHHHHHHhhhhHHHH---HHHHHHHHHHHhhhHHHHhcceeeeehhhHHH-----HHHHHHHhhHHHHHHhcCchHHH
Confidence 45566677643332222 36899999998766777888888888887762 22333457899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCchhhHHHhhc--hHHHHHHHhccCChhHHHHHHHHHHHhhcC
Q 010080 226 VRTAAWALSNLIKGPDPKPATELIKVDG--LLDAILRHLKRADEELTTEVAWVVVYLSAL 283 (518)
Q Consensus 226 ~~~a~~~L~nL~~~~~~~~~~~~i~~~~--~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 283 (518)
++++.-.|++|.... ++.=.| ++..++.++ +.+++++..+=.+++.+...
T Consensus 1023 Rrqt~ilL~rLLq~~-------~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1023 RRQTIILLARLLQFG-------IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHHHHHHHhhh-------hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence 999999999998542 222123 233333333 66789999999999888763
No 377
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=21.83 E-value=3.1e+02 Score=23.92 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=45.1
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHH-HhcCC--ChhHHHHHHHHHHHhcCC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLH-LLSTS--PFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~-lL~~~--~~~v~~eA~~aL~nl~~~ 416 (518)
.+.+.|.+.+.++++.+-..++.++.++...-....+.=++. +++.++. ++.+. ....|..++.++..+|..
T Consensus 73 ~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~-~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 73 DLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV-FLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 466777777766667777788888888875433333222222 3455555 55443 346666788899999875
No 378
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=21.67 E-value=2.7e+02 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=20.8
Q ss_pred HHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcC
Q 010080 382 IHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 382 li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~ 415 (518)
++-.|.+..=+.++. .-++.-++|+-|.|||+..
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiD 46 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIID 46 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecch
Confidence 334455555555552 2344568899999999976
No 379
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=21.60 E-value=2.6e+02 Score=27.73 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 010080 451 DIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVD 507 (518)
Q Consensus 451 d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~ 507 (518)
|.+++..+|++-..|++.|.|- . -+...|.|..|.+..|.+|...|.+++-
T Consensus 1 D~elv~~IL~Ft~lLLEnc~NR---s---lYsS~e~L~~LL~s~~~dVl~~aL~ll~ 51 (329)
T PF06012_consen 1 DKELVLAILRFTRLLLENCGNR---S---LYSSSEHLNSLLNSTDLDVLLAALRLLL 51 (329)
T ss_pred CHHHHHHHHHHHHHHHhccCCC---C---ccccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5788899999999999988762 1 2456789999999999999999988874
No 380
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=21.58 E-value=3.1e+02 Score=24.05 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=41.2
Q ss_pred hHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC
Q 010080 297 LQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS 375 (518)
Q Consensus 297 ~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~ 375 (518)
+...++.+...++..+...++.++.+....+.-..+.. ..++|.+..+|.+.......-|+-.+.-+....
T Consensus 30 ~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c--------~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f 100 (164)
T PF13925_consen 30 IKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLC--------VDLLPLIEELLQSKYESYISVALEMLRSILKKF 100 (164)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHH--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 33344433334555555555555554333322111111 358999999999988877777887777776543
No 381
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=21.43 E-value=2e+02 Score=28.39 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcC------CCHHHHHHHHHHHH
Q 010080 450 ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH------ENEDLRNMANGLVD 507 (518)
Q Consensus 450 ~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~------~~~~i~~~a~~il~ 507 (518)
++...+.++|.+|+.++..+++......-+..-.++.|..+++- +-..|+++|..|+.
T Consensus 71 knWR~VyKaLtlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~ 134 (336)
T KOG2056|consen 71 KNWRHVYKALTLLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLS 134 (336)
T ss_pred chHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHH
Confidence 55678889999999999877652222222333344455555432 24468888888776
No 382
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.32 E-value=2.9e+02 Score=31.35 Aligned_cols=72 Identities=13% Similarity=-0.016 Sum_probs=56.8
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHh---ccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNI---AAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl---~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
.++..-..+|+|++..+|-+|.-+++-. .+..+...-.++. ...|.+++.+...++-+-..|+.+|.+++..
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 4666777888999999999999888743 3344444444444 4899999999999999999999999999875
No 383
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.31 E-value=3e+02 Score=24.69 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=48.7
Q ss_pred cCchHHHHHhhcc---CCHHHHHHHHHHHHHHHccCCCCcc----hhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080 437 RGCLSGFIDLVRS---ADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNMANGLVDK 508 (518)
Q Consensus 437 ~g~i~~L~~lL~~---~d~~~~~~~l~~l~~il~~~~~~~~----~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~ 508 (518)
.+=+.++++.+.. .+.+....++.++..|+..+++-.. +..+..+|-.+.++.|...+++.+..+.....+.
T Consensus 20 ~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~R~~lr~e~~~~GL~~il~~l~~~~~~~L~~Qi~~f~~~ 98 (197)
T PF06367_consen 20 RGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNFRVHLRNEFERLGLLDILEKLRNLEDDDLQEQIDIFEEN 98 (197)
T ss_dssp S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTTHHHHHHHHTTS--HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCcHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3456777777773 5678888899999999887665332 3557778888899999999999988766544443
No 384
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.96 E-value=1.1e+02 Score=30.24 Aligned_cols=55 Identities=2% Similarity=-0.111 Sum_probs=46.8
Q ss_pred HHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC--CCChhHHHHHHHHHHHhhcCC
Q 010080 186 QCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--PNKGSTVRTAAWALSNLIKGP 240 (518)
Q Consensus 186 ~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~ 240 (518)
+....++++|...++..+.+.+.|+++.++.-.. ..++-+.+-...|+.+|..+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN 431 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNN 431 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcc
Confidence 3667999999999999999999999999887544 457888999999999998763
No 385
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=20.87 E-value=4.3e+02 Score=21.17 Aligned_cols=83 Identities=12% Similarity=0.197 Sum_probs=54.1
Q ss_pred ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 010080 356 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV 435 (518)
Q Consensus 356 ~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~ 435 (518)
+.+.|..-..|++.|.- .... ++..+.+.+....+.-+-.+.+.+-.++.+. +.+ .....
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~~-----iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~----~~~------~~~~~ 76 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAKE-----IVEIIEKHIKKCPPEQKLPLLYLLDSIVKNV----GRK------YKEFF 76 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHHH-----HHHHHHHHHHhCCcccchHHHHHHHHHHHHc----ccc------hHHHH
Confidence 66788999999998872 2222 4455666777667777778888888888753 221 12223
Q ss_pred hcCchHHHHHhhccCCHHHHHHH
Q 010080 436 GRGCLSGFIDLVRSADIEAARLG 458 (518)
Q Consensus 436 ~~g~i~~L~~lL~~~d~~~~~~~ 458 (518)
.....+.+.......|+++....
T Consensus 77 ~~~~~~~f~~~~~~~~~~~r~kl 99 (114)
T cd03562 77 SEFLVPLFLDAYEKVDEKTRKKL 99 (114)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHH
Confidence 33347777777777788777653
Done!