Query 010080
Match_columns 518
No_of_seqs 305 out of 2493
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 19:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 1.6E-78 5.5E-83 643.1 36.6 485 4-518 7-504 (529)
2 3ul1_B Importin subunit alpha- 100.0 4.4E-68 1.5E-72 560.1 38.9 419 78-518 56-485 (510)
3 4b8j_A Importin subunit alpha- 100.0 1E-63 3.5E-68 530.3 42.0 480 5-517 9-502 (528)
4 1wa5_B Importin alpha subunit; 100.0 1.8E-62 6.2E-67 520.9 34.4 493 1-516 8-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 7.7E-50 2.6E-54 414.6 38.0 416 84-518 22-450 (450)
6 3nmz_A APC variant protein; pr 100.0 1E-46 3.5E-51 386.0 25.8 366 79-469 29-452 (458)
7 1xm9_A Plakophilin 1; armadill 100.0 5.9E-43 2E-47 363.1 34.1 362 126-514 3-452 (457)
8 3now_A UNC-45 protein, SD10334 100.0 1.7E-43 5.7E-48 381.5 27.3 365 81-469 379-784 (810)
9 1xm9_A Plakophilin 1; armadill 100.0 1.7E-39 5.9E-44 337.0 28.6 361 81-468 4-450 (457)
10 2z6h_A Catenin beta-1, beta-ca 100.0 1.4E-38 4.9E-43 344.9 35.2 407 84-513 100-549 (644)
11 1jdh_A Beta-catenin; beta-cate 100.0 1.4E-38 4.8E-43 336.9 33.6 405 84-509 103-528 (529)
12 3ul1_B Importin subunit alpha- 100.0 1.6E-38 5.3E-43 334.7 31.8 365 126-511 58-430 (510)
13 3now_A UNC-45 protein, SD10334 100.0 8.6E-39 2.9E-43 344.9 28.1 397 89-510 337-781 (810)
14 4b8j_A Importin subunit alpha- 100.0 1.6E-37 5.5E-42 329.0 34.3 366 124-511 73-443 (528)
15 3tpo_A Importin subunit alpha- 100.0 1.6E-37 5.4E-42 328.8 33.5 365 125-510 76-448 (529)
16 3l6x_A Catenin delta-1; cateni 100.0 1.1E-37 3.7E-42 326.0 30.3 362 84-467 50-476 (584)
17 3l6x_A Catenin delta-1; cateni 100.0 2.4E-37 8E-42 323.4 31.2 371 123-513 46-478 (584)
18 1wa5_B Importin alpha subunit; 100.0 2E-36 6.7E-41 320.8 36.5 369 124-512 86-458 (530)
19 2z6g_A B-catenin; FULL-length, 100.0 1.8E-35 6E-40 326.0 35.7 403 84-509 236-661 (780)
20 2jdq_A Importin alpha-1 subuni 100.0 1.5E-35 5.1E-40 307.1 29.9 370 81-468 66-444 (450)
21 3nmz_A APC variant protein; pr 100.0 1.1E-34 3.9E-39 296.9 25.8 326 81-416 72-451 (458)
22 3nmw_A APC variant protein; AR 100.0 1.8E-34 6.3E-39 287.0 21.6 273 179-470 44-337 (354)
23 1jdh_A Beta-catenin; beta-cate 100.0 2.1E-33 7.3E-38 297.1 29.8 398 81-511 61-489 (529)
24 2z6h_A Catenin beta-1, beta-ca 100.0 3.3E-32 1.1E-36 295.0 32.2 399 81-512 58-487 (644)
25 2z6g_A B-catenin; FULL-length, 100.0 1.1E-31 3.6E-36 295.9 32.1 397 81-510 194-621 (780)
26 3nmw_A APC variant protein; AR 100.0 1.8E-32 6E-37 272.7 22.3 266 142-416 48-335 (354)
27 4hxt_A De novo protein OR329; 100.0 1.1E-28 3.9E-33 234.6 22.2 242 166-417 2-243 (252)
28 4hxt_A De novo protein OR329; 100.0 7E-28 2.4E-32 229.2 21.7 240 125-375 2-243 (252)
29 4db8_A Armadillo-repeat protei 100.0 2.3E-28 7.9E-33 233.0 17.0 239 167-415 13-251 (252)
30 1xqr_A HSPBP1 protein; armadil 100.0 5.3E-28 1.8E-32 234.3 18.5 226 267-515 54-291 (296)
31 4db8_A Armadillo-repeat protei 100.0 1.1E-27 3.9E-32 228.2 17.8 238 125-373 12-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 5.2E-25 1.8E-29 233.2 21.8 322 89-416 341-729 (778)
33 4db6_A Armadillo repeat protei 99.9 5.3E-24 1.8E-28 196.9 19.0 199 251-466 10-208 (210)
34 4db6_A Armadillo repeat protei 99.9 5.1E-24 1.7E-28 197.1 18.5 200 207-415 10-209 (210)
35 1xqr_A HSPBP1 protein; armadil 99.9 1.9E-23 6.6E-28 202.2 19.4 181 142-327 56-240 (296)
36 3opb_A SWI5-dependent HO expre 99.9 1.8E-22 6.2E-27 213.8 28.3 392 95-511 269-728 (778)
37 3tt9_A Plakophilin-2; cell adh 99.9 2.1E-21 7.2E-26 180.1 16.5 196 126-326 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 9.9E-21 3.4E-25 175.5 14.8 192 86-283 12-230 (233)
39 4fdd_A Transportin-1; heat rep 99.7 1.1E-16 3.8E-21 178.7 22.2 350 87-470 95-474 (852)
40 1oyz_A Hypothetical protein YI 99.7 3.9E-16 1.3E-20 150.7 21.5 259 121-464 19-279 (280)
41 4fdd_A Transportin-1; heat rep 99.7 5.7E-16 2E-20 173.0 22.5 396 83-510 49-470 (852)
42 2vgl_B AP-2 complex subunit be 99.7 4.2E-16 1.4E-20 166.6 18.9 363 87-511 91-457 (591)
43 1b3u_A Protein (protein phosph 99.7 5E-15 1.7E-19 157.9 26.2 342 124-509 241-585 (588)
44 3grl_A General vesicular trans 99.7 4.6E-14 1.6E-18 146.1 31.7 321 79-416 21-395 (651)
45 2vgl_B AP-2 complex subunit be 99.7 1.9E-14 6.5E-19 153.8 29.0 375 82-504 16-412 (591)
46 1b3u_A Protein (protein phosph 99.7 9.7E-15 3.3E-19 155.7 26.3 375 90-511 172-548 (588)
47 1oyz_A Hypothetical protein YI 99.7 1.4E-14 4.7E-19 139.8 23.5 254 166-507 23-278 (280)
48 2bpt_A Importin beta-1 subunit 99.6 5.4E-14 1.9E-18 156.9 21.7 385 89-506 273-706 (861)
49 3grl_A General vesicular trans 99.6 5.3E-12 1.8E-16 130.7 31.6 356 81-449 121-528 (651)
50 2bpt_A Importin beta-1 subunit 99.5 2.3E-13 7.8E-18 151.9 22.1 345 96-470 345-714 (861)
51 1qgr_A Protein (importin beta 99.5 1E-12 3.4E-17 147.0 23.1 379 96-509 342-825 (876)
52 1ibr_B P95, importin beta-1 su 99.5 1.1E-12 3.7E-17 135.4 20.6 387 84-511 3-437 (462)
53 3ltm_A Alpha-REP4; protein eng 99.5 7E-13 2.4E-17 122.1 17.0 186 166-416 19-204 (211)
54 3ltj_A Alpharep-4; protein eng 99.5 1.2E-12 4.1E-17 119.5 17.6 183 167-414 15-197 (201)
55 1ibr_B P95, importin beta-1 su 99.5 5.7E-13 1.9E-17 137.5 16.4 353 94-469 49-439 (462)
56 1qgr_A Protein (importin beta 99.5 2.1E-12 7.2E-17 144.3 21.6 367 81-471 130-541 (876)
57 1w63_A Adapter-related protein 99.5 2.4E-11 8.3E-16 130.2 28.5 353 82-506 37-409 (618)
58 1u6g_C TIP120 protein, CAND1; 99.4 1.6E-11 5.5E-16 142.3 27.7 396 83-509 7-461 (1230)
59 3ltm_A Alpha-REP4; protein eng 99.4 6.7E-12 2.3E-16 115.4 17.7 188 124-375 18-205 (211)
60 1w63_A Adapter-related protein 99.4 5.3E-11 1.8E-15 127.6 27.3 366 90-508 150-574 (618)
61 3ltj_A Alpharep-4; protein eng 99.4 1.6E-11 5.4E-16 112.0 18.6 183 209-465 14-196 (201)
62 1u6g_C TIP120 protein, CAND1; 99.3 2.5E-10 8.5E-15 132.4 22.9 397 85-510 51-505 (1230)
63 4gmo_A Putative uncharacterize 99.2 6.5E-11 2.2E-15 128.3 11.9 199 167-372 35-257 (684)
64 4gmo_A Putative uncharacterize 99.1 3.4E-10 1.2E-14 122.6 13.2 196 123-324 33-257 (684)
65 2vgl_A Adaptor protein complex 99.1 1.1E-07 3.8E-12 101.6 32.5 330 81-466 37-397 (621)
66 3b2a_A TON_1937, putative unch 98.9 7.1E-08 2.4E-12 86.4 17.7 226 252-508 32-258 (265)
67 2vgl_A Adaptor protein complex 98.9 3E-07 1E-11 98.2 26.2 323 88-467 80-433 (621)
68 3tjz_B Coatomer subunit gamma; 98.8 1.1E-07 3.6E-12 93.3 16.0 304 95-460 40-346 (355)
69 4ady_A RPN2, 26S proteasome re 98.7 9.8E-07 3.4E-11 96.0 22.7 274 127-470 394-679 (963)
70 4ady_A RPN2, 26S proteasome re 98.7 4.5E-07 1.5E-11 98.6 19.3 237 126-417 430-678 (963)
71 2db0_A 253AA long hypothetical 98.6 8E-06 2.7E-10 70.2 19.4 213 167-415 33-246 (253)
72 1te4_A Conserved protein MTH18 98.5 6.5E-09 2.2E-13 87.6 -0.8 121 252-413 11-131 (131)
73 1te4_A Conserved protein MTH18 98.5 5.5E-08 1.9E-12 81.8 4.1 120 294-464 11-130 (131)
74 3tjz_B Coatomer subunit gamma; 98.5 7.1E-07 2.4E-11 87.5 12.0 274 168-505 70-347 (355)
75 2qk2_A LP04448P; mini spindles 98.5 1E-06 3.4E-11 82.4 12.6 184 213-415 19-205 (242)
76 2qk1_A Protein STU2; STU2P, XM 98.4 6.6E-06 2.2E-10 77.2 15.3 192 215-415 22-220 (249)
77 2qk2_A LP04448P; mini spindles 98.4 2.7E-06 9.3E-11 79.5 12.3 181 90-282 23-205 (242)
78 3b2a_A TON_1937, putative unch 98.3 6.9E-06 2.4E-10 73.7 13.1 185 294-512 32-219 (265)
79 1ho8_A Vacuolar ATP synthase s 98.3 0.00013 4.5E-09 73.2 23.9 320 82-414 80-475 (480)
80 2qk1_A Protein STU2; STU2P, XM 98.3 2.6E-06 8.7E-11 80.0 10.2 200 257-471 20-224 (249)
81 1ho8_A Vacuolar ATP synthase s 98.2 3.9E-05 1.3E-09 77.0 16.3 235 129-373 171-476 (480)
82 2x1g_F Cadmus; transport prote 98.1 0.00058 2E-08 76.9 26.8 338 97-469 204-617 (971)
83 1wa5_C Importin alpha RE-expor 98.1 0.0029 1E-07 71.1 30.6 309 85-416 126-526 (960)
84 2iw3_A Elongation factor 3A; a 98.1 0.00076 2.6E-08 74.4 24.8 296 87-413 19-322 (986)
85 4hat_C Exportin-1; heat repeat 98.0 0.0015 5.2E-08 73.4 26.9 340 93-471 206-622 (1023)
86 2db0_A 253AA long hypothetical 98.0 0.00078 2.7E-08 58.0 17.7 217 123-373 30-246 (253)
87 3m1i_C Exportin-1; heat repeat 97.9 0.0039 1.3E-07 70.8 27.4 341 94-470 207-621 (1049)
88 2x1g_F Cadmus; transport prote 97.8 0.0024 8.2E-08 71.9 24.9 298 95-416 257-616 (971)
89 4hat_C Exportin-1; heat repeat 97.8 0.00091 3.1E-08 75.2 20.5 145 134-284 460-620 (1023)
90 2x19_B Importin-13; nuclear tr 97.7 0.00086 2.9E-08 75.5 19.1 339 142-512 464-847 (963)
91 1wa5_C Importin alpha RE-expor 97.7 0.00044 1.5E-08 77.8 16.3 252 145-414 380-669 (960)
92 3c2g_A SYS-1 protein; beta-cat 97.6 0.02 6.9E-07 54.3 22.8 135 185-324 261-409 (619)
93 2iw3_A Elongation factor 3A; a 97.6 0.0035 1.2E-07 69.2 20.8 265 209-509 54-322 (986)
94 3ibv_A Exportin-T; karyopherin 97.6 0.0043 1.5E-07 69.6 21.4 309 93-417 204-568 (980)
95 3dad_A FH1/FH2 domain-containi 97.5 0.0007 2.4E-08 64.6 11.9 189 258-457 123-326 (339)
96 3dad_A FH1/FH2 domain-containi 97.5 0.0028 9.5E-08 60.5 15.7 153 348-512 122-287 (339)
97 2x19_B Importin-13; nuclear tr 97.4 0.03 1E-06 62.8 25.0 337 92-470 459-849 (963)
98 1upk_A MO25 protein; transfera 97.0 0.059 2E-06 51.4 18.8 208 203-417 72-285 (341)
99 3gjx_A Exportin-1; transport, 96.9 0.33 1.1E-05 54.5 27.1 336 93-471 218-648 (1073)
100 3oc3_A Helicase MOT1, MOT1; re 96.9 0.011 3.9E-07 59.8 13.3 251 87-410 179-431 (800)
101 3m1i_C Exportin-1; heat repeat 96.9 0.086 2.9E-06 59.7 22.6 101 356-469 465-571 (1049)
102 4ffb_C Protein STU2; tubulin f 96.8 0.026 8.9E-07 53.3 15.1 187 300-510 14-211 (278)
103 3ibv_A Exportin-T; karyopherin 96.7 0.23 7.7E-06 55.6 24.0 342 140-510 456-869 (980)
104 3c2g_A SYS-1 protein; beta-cat 96.5 0.63 2.1E-05 44.3 24.3 188 270-468 260-474 (619)
105 4ffb_C Protein STU2; tubulin f 96.4 0.11 3.9E-06 48.8 16.3 183 90-282 17-212 (278)
106 2f31_A Diaphanous protein homo 96.3 0.058 2E-06 49.4 13.2 144 357-503 67-220 (233)
107 2of3_A ZYG-9; multifunctional 96.2 0.054 1.8E-06 50.4 12.3 103 344-469 132-238 (266)
108 3eg5_B Protein diaphanous homo 95.4 0.32 1.1E-05 48.0 15.3 142 358-501 134-284 (383)
109 3gjx_A Exportin-1; transport, 95.4 1.7 5.7E-05 48.9 22.5 150 128-283 480-645 (1073)
110 2bnx_A Diaphanous protein homo 95.3 0.39 1.3E-05 47.4 15.4 142 357-501 71-222 (386)
111 2of3_A ZYG-9; multifunctional 95.2 0.2 6.7E-06 46.6 11.9 173 90-282 54-236 (266)
112 1lsh_A Lipovitellin (LV-1N, LV 95.0 0.97 3.3E-05 51.0 19.4 174 202-413 346-541 (1056)
113 3l9t_A Putative uncharacterize 95.0 0.22 7.4E-06 45.1 11.1 179 81-293 39-218 (240)
114 3u0r_A Apoptosis inhibitor 5; 94.7 1.9 6.5E-05 43.1 18.1 122 180-324 41-162 (507)
115 1lrv_A LRV, leucine-rich repea 93.8 0.037 1.3E-06 51.0 3.6 67 170-275 78-144 (244)
116 3u0r_A Apoptosis inhibitor 5; 93.4 1.9 6.5E-05 43.1 15.1 128 308-471 40-167 (507)
117 3oc3_A Helicase MOT1, MOT1; re 93.0 0.96 3.3E-05 46.2 12.3 243 212-507 177-432 (800)
118 1upk_A MO25 protein; transfera 93.0 6.4 0.00022 37.5 18.6 236 166-414 78-331 (341)
119 3ebb_A Phospholipase A2-activa 92.9 2.6 9E-05 39.9 15.0 183 97-289 79-270 (304)
120 3a6p_A Exportin-5; exportin-5, 92.9 7.1 0.00024 44.7 21.3 304 82-414 11-379 (1204)
121 3l9t_A Putative uncharacterize 92.4 2.2 7.6E-05 38.5 12.9 144 212-385 74-219 (240)
122 3eg5_B Protein diaphanous homo 90.6 14 0.00047 36.2 18.0 140 97-239 82-247 (383)
123 2f31_A Diaphanous protein homo 90.4 9.9 0.00034 34.3 16.1 140 97-239 16-181 (233)
124 2fv2_A RCD1 required for cell 89.8 2.6 9E-05 38.4 10.7 138 184-324 73-223 (268)
125 3gs3_A Symplekin, LD45768P; he 89.6 12 0.00042 34.3 19.4 198 80-289 13-250 (257)
126 3a6p_A Exportin-5; exportin-5, 89.6 19 0.00067 41.0 20.5 292 139-468 26-381 (1204)
127 1vdy_A Hypothetical protein (R 87.7 0.6 2.1E-05 38.6 4.6 77 439-515 50-134 (140)
128 1lsh_A Lipovitellin (LV-1N, LV 87.6 3.4 0.00012 46.5 12.3 90 168-279 442-540 (1056)
129 2fv2_A RCD1 required for cell 87.5 7.8 0.00027 35.3 12.1 88 371-467 82-174 (268)
130 3ebb_A Phospholipase A2-activa 87.0 2.4 8.3E-05 40.1 9.1 121 94-220 160-287 (304)
131 1lrv_A LRV, leucine-rich repea 85.5 0.3 1E-05 44.9 1.8 64 174-276 58-121 (244)
132 2bnx_A Diaphanous protein homo 80.1 37 0.0013 33.1 14.7 169 98-270 21-220 (386)
133 3o2t_A Symplekin; heat repeat, 78.4 52 0.0018 32.0 17.2 193 82-288 25-262 (386)
134 3qml_C Protein SLS1, nucleotid 78.3 27 0.00091 32.7 12.0 131 362-511 46-189 (315)
135 3g2s_A C-terminal fragment of 78.1 25 0.00085 29.2 10.8 93 344-440 48-147 (149)
136 3o2t_A Symplekin; heat repeat, 76.8 31 0.0011 33.6 12.7 132 312-466 41-182 (386)
137 2p8q_B Snurportin-1; heat repe 74.1 3.3 0.00011 25.8 3.1 37 9-46 2-39 (40)
138 3gs3_A Symplekin, LD45768P; he 74.1 43 0.0015 30.5 12.3 110 344-466 53-172 (257)
139 1x5b_A Signal transducing adap 73.9 6.9 0.00024 33.2 6.5 70 439-509 53-123 (163)
140 3ldz_A STAM-1, signal transduc 71.9 6.1 0.00021 32.6 5.5 70 439-509 43-112 (140)
141 3ut4_A CTHE_2751, putative unc 71.2 16 0.00056 29.6 7.6 95 387-512 32-131 (134)
142 3qml_C Protein SLS1, nucleotid 70.0 37 0.0013 31.8 10.8 97 356-467 82-189 (315)
143 3g2s_A C-terminal fragment of 68.9 11 0.00036 31.5 6.3 70 439-509 49-124 (149)
144 1mhq_A ADP-ribosylation factor 68.8 10 0.00035 31.5 6.3 70 439-509 39-114 (148)
145 1juq_A ADP-ribosylation factor 67.0 10 0.00034 32.4 6.0 70 439-509 51-126 (171)
146 4atg_A TAF6; transcription, TF 64.7 23 0.0008 30.9 7.9 143 77-237 9-161 (196)
147 1mhq_A ADP-ribosylation factor 63.4 53 0.0018 27.1 9.6 72 344-415 38-116 (148)
148 3gjx_B Snurportin-1; transport 61.0 2.3 7.9E-05 40.5 0.8 44 5-48 27-70 (365)
149 1juq_A ADP-ribosylation factor 58.6 84 0.0029 26.6 10.8 72 344-415 50-128 (171)
150 3ldz_A STAM-1, signal transduc 56.0 48 0.0017 27.0 8.1 71 344-414 42-113 (140)
151 2xpp_A IWS1, ECU08_0440; trans 54.3 53 0.0018 27.0 7.9 72 432-509 55-134 (145)
152 1x5b_A Signal transducing adap 53.6 58 0.002 27.3 8.4 71 344-414 52-124 (163)
153 3zyq_A Hepatocyte growth facto 48.9 1E+02 0.0034 27.4 9.7 72 344-415 45-118 (226)
154 3zyq_A Hepatocyte growth facto 47.5 27 0.00092 31.2 5.6 70 439-509 46-116 (226)
155 1elk_A Target of MYB1; superhe 46.6 39 0.0013 28.2 6.2 70 439-509 54-128 (157)
156 1dvp_A HRS, hepatocyte growth 46.5 29 0.00099 30.9 5.7 70 439-509 43-113 (220)
157 1vsy_5 Proteasome activator BL 46.5 67 0.0023 35.7 9.6 187 252-468 132-366 (997)
158 4fu3_A Regulation of nuclear P 39.3 20 0.0007 29.0 3.2 64 343-416 6-69 (135)
159 1inz_A EPS15-interacting porte 38.8 86 0.003 25.8 6.9 75 439-513 60-142 (148)
160 2b6c_A Hypothetical protein EF 37.8 2.1E+02 0.0071 25.1 12.0 131 256-416 58-189 (220)
161 3nfq_A Transcription factor IW 37.5 1.3E+02 0.0045 25.3 7.9 73 432-510 70-150 (170)
162 1wjt_A Transcription elongatio 37.2 27 0.00091 26.9 3.3 50 458-510 33-83 (103)
163 3fga_B Serine/threonine-protei 36.9 2.8E+02 0.0096 27.0 11.3 226 127-371 131-364 (403)
164 1vsy_5 Proteasome activator BL 33.5 4.4E+02 0.015 29.2 13.6 186 168-373 135-365 (997)
165 2g7o_A Protein TRAM; four heli 31.3 39 0.0013 23.8 2.9 19 497-515 51-69 (70)
166 3jxy_A Alkylpurine DNA glycosy 26.9 2E+02 0.0068 25.4 8.0 116 168-301 97-214 (232)
167 3gae_A Protein DOA1; UFD3, CDC 25.9 81 0.0028 28.6 5.1 99 179-284 102-219 (253)
168 2kjg_A Archaeal protein SSO690 25.6 1.4E+02 0.0049 21.8 5.2 59 449-512 18-76 (99)
169 3gae_A Protein DOA1; UFD3, CDC 25.3 99 0.0034 28.0 5.6 132 312-468 70-218 (253)
170 3on0_A Protein TRAM; DNA bindi 24.7 50 0.0017 26.0 2.9 23 496-518 105-127 (127)
171 3pst_A Protein DOA1; protein d 24.5 3.2E+02 0.011 26.8 9.3 130 312-467 242-389 (425)
172 1dvp_A HRS, hepatocyte growth 24.2 62 0.0021 28.6 3.9 47 89-135 49-95 (220)
173 3sjd_D Golgi to ER traffic pro 22.3 68 0.0023 20.2 2.5 15 29-43 18-32 (46)
174 3onk_A Epsin-3, ENT3; helix, p 20.7 63 0.0022 26.7 2.9 66 440-509 49-127 (150)
175 4flb_A Regulation of nuclear P 20.5 2.3E+02 0.0079 22.3 6.4 57 214-282 13-69 (132)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.6e-78 Score=643.12 Aligned_cols=485 Identities=28% Similarity=0.484 Sum_probs=385.8
Q ss_pred CccCcccccccccccCc-hH-HhhhHHHHHHHhhHhhHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHHhhhHHHH
Q 010080 4 DSLNHHKRDPIKSSVGN-VA-AQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAV 81 (518)
Q Consensus 4 ~~~~~~r~~~~k~~~~~-~~-~~rr~~~~~~~rk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (518)
.+.|++|+++||++|.+ ++ ||||++++|+|||+||||+|.|||+. ...+++..++..+. . .........
T Consensus 7 ~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~--~~~~~~~~~~~~~~-----~-~~~~~~~~~- 77 (529)
T 3tpo_A 7 ANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNV--SSFPDDATSPLQEN-----R-NNQGTVNWS- 77 (529)
T ss_dssp -------------------------------------CCSCSCCCCC--C---------------------CGGGSSCC-
T ss_pred CCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCC--CCCcccccChhhhc-----c-chhhhHHHH-
Confidence 46789999999987754 34 55556799999999999999888853 22222222211110 0 001111222
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~ 161 (518)
+..++++++|+|++.++.|+..+|++||.+++||++.++++|+||.||++|...+++.+|++|+|+|+|||+++++++
T Consensus 78 --l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 78 --VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp --HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 444555667999999999999999999999999999999999999999999877778899999999999999999999
Q ss_pred HHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC-----hhHHHHHHHHHH
Q 010080 162 KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-----GSTVRTAAWALS 234 (518)
Q Consensus 162 ~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~ 234 (518)
..++ |+||.|+.+|.+ ++.+++++|+|+|+||+++++++|+.++..|++++|+.++..++ ..++++++|+|+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 9988 799999999988 78999999999999999999999999999999999999998653 457899999999
Q ss_pred HhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchh
Q 010080 235 NLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLI 314 (518)
Q Consensus 235 nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~ 314 (518)
|+|+++.+..... ...+++|.|++++.+++++++.++||+|+|++.++++..+.+++.|+++.|+.+| .+++..++.
T Consensus 235 nl~~~~~~~~~~~--~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~ 311 (529)
T 3tpo_A 235 NLCRNKNPAPPLD--AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVT 311 (529)
T ss_dssp HHHCCCTTCCCHH--HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHH
T ss_pred HHHhcccchhhHH--HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHH
Confidence 9999876554433 3569999999999999999999999999999998888899999999999999999 588899999
Q ss_pred hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080 315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL 394 (518)
Q Consensus 315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l 394 (518)
+++++|+|++++++.++..+++. |+++.|+.+|.++++.++++|||+|+||+++++.+++.+++.|++|.|+.+
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~------g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~l 385 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDA------GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 385 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHT------TGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHhhc------ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999888888865 599999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC---
Q 010080 395 LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN--- 471 (518)
Q Consensus 395 L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~--- 471 (518)
|.+++++++++|+|+|+|++.+. + .+++.+|++.|+|++|+++|.++|++++..+|++|.+|++.++.
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~-----~----~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~ 456 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGG-----T----VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 456 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHS-----C----HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hcCCCHHHHHHHHHHHHHHHcCC-----C----HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccC
Confidence 99999999999999999998752 3 47889999999999999999999999999999999999976432
Q ss_pred -CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCCCC
Q 010080 472 -HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518 (518)
Q Consensus 472 -~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~~~ 518 (518)
+.+..+|+++||+++|+.||+|+|++||++|..||++||++++++|+
T Consensus 457 ~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~ 504 (529)
T 3tpo_A 457 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQ 504 (529)
T ss_dssp HHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--------
T ss_pred hHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccc
Confidence 24567899999999999999999999999999999999998776653
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.4e-68 Score=560.14 Aligned_cols=419 Identities=30% Similarity=0.544 Sum_probs=377.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC
Q 010080 78 SSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK 157 (518)
Q Consensus 78 ~~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~ 157 (518)
.+.++++++. ++|+|++.|+.|+..+|++||.+++||++.++++|+||.||++|+..+++.+|++|+|+|+|||+++
T Consensus 56 ~~~i~~~v~~---l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 56 NWSVEDIVKG---INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp SCCHHHHHHH---HTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred hhhHHHHHHH---hcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 3445666554 4699999999999999999999999999999999999999999987777889999999999999999
Q ss_pred hHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC-----hhHHHHHH
Q 010080 158 QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-----GSTVRTAA 230 (518)
Q Consensus 158 ~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~ 230 (518)
+++++.++ |+||.|+.+|.+ ++.+++++|+|+|+||+++++++|+.+.+.|++++|+.++..++ ..++++++
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence 99999998 799999999988 78999999999999999999999999999999999999998653 45789999
Q ss_pred HHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCc
Q 010080 231 WALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL 310 (518)
Q Consensus 231 ~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~ 310 (518)
|+++|+|+++.+.... ....+++|.|++++.+++++++..+||+|++|+.++++..+.+.+.|+++.|+.+| .+++.
T Consensus 212 ~~L~nl~~~~~~~~~~--~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~ 288 (510)
T 3ul1_B 212 WTLSNLCRNKNPAPPL--DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATEL 288 (510)
T ss_dssp HHHHHHHCCCSSCCCH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCH
T ss_pred HHHHHHhhcccchhHH--HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCCh
Confidence 9999999987655443 33569999999999999999999999999999998888889999999999999999 58889
Q ss_pred cchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHH
Q 010080 311 QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALAL 390 (518)
Q Consensus 311 ~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~ 390 (518)
.++.+++++|+|++++++.++..+++. |+++.|+.+|.++++.++++|+|+|+||+++++.+++.+++.|++|.
T Consensus 289 ~v~~~al~aL~nl~~~~~~~~~~i~~~------g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~ 362 (510)
T 3ul1_B 289 PIVTPALRAIGNIVTGTDEQTQKVIDA------GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF 362 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHT------TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred hhhhHHHHHHHHhhcCCHHHHHHHhhc------cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHH
Confidence 999999999999999999998888865 59999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080 391 LLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 470 (518)
Q Consensus 391 Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~ 470 (518)
|+.+|.++++++|++|+|+|+|++.+. + .+++.+|++.|++++|+++|.++|++++..+|++|.+|++.++
T Consensus 363 Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~-----~----~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 363 LVGVLSKADFKTQKEAAWAITNYTSGG-----T----VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHC-----C----HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHccC-----C----HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999998752 3 4788999999999999999999999999999999999998653
Q ss_pred C----CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCCCC
Q 010080 471 N----HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518 (518)
Q Consensus 471 ~----~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~~~ 518 (518)
. +.++.+|+++||+++|+.||+|+|++||++|..||++||++++++|+
T Consensus 434 ~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~ 485 (510)
T 3ul1_B 434 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQ 485 (510)
T ss_dssp TTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-------
T ss_pred hccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccc
Confidence 2 24567899999999999999999999999999999999998877653
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1e-63 Score=530.25 Aligned_cols=480 Identities=32% Similarity=0.525 Sum_probs=378.5
Q ss_pred ccCcccccccccccCchH-HhhhHHHHHHHhhHhhHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHHhhhHHHHHH
Q 010080 5 SLNHHKRDPIKSSVGNVA-AQRRRQNAVTVGKERRESLVRAKRLCRVGTSADGEVSSDSDMMVDEEQSILEMQTSSAVEE 83 (518)
Q Consensus 5 ~~~~~r~~~~k~~~~~~~-~~rr~~~~~~~rk~~r~~~l~~kR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (518)
.++++|+++||++.+.++ ||||++..++|||+|||++|.|||+. ....++..++ . .. .......+.
T Consensus 9 ~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~--~~~~~~~~~~--~----~~-----~~~~~~~~~ 75 (528)
T 4b8j_A 9 ERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRRE--GLQAQAPVPA--S----AA-----TGVDKKLES 75 (528)
T ss_dssp ------------------CCCCC-----------------CCCC-----------------------------------C
T ss_pred CChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhcc--CCCccccccc--c----cc-----cchhhhHHH
Confidence 456899999999765555 56666799999999999999999963 2111110000 0 00 000112244
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080 84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA 163 (518)
Q Consensus 84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~ 163 (518)
++.+++.++++|++.+..|+..|+++++...++++..+++.|++|.|+++|..++.+.++.+|+|+|+++++++++.+..
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55666666799999999999999999998887899999999999999999997765778889999999999998888888
Q ss_pred hc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh-CCCChhHHHHHHHHHHHhhcCC
Q 010080 164 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM-LPNKGSTVRTAAWALSNLIKGP 240 (518)
Q Consensus 164 v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~ 240 (518)
++ |++|.|+.+|.+ +++.++++|+|+|+||+.+++.+++.+...|++++|+.++ .+.+..+++.++|+|++||.+.
T Consensus 156 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 87 799999999988 7899999999999999999999999999999999999999 5678999999999999999875
Q ss_pred CCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhh
Q 010080 241 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL 320 (518)
Q Consensus 241 ~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L 320 (518)
+..... ...+++|.|+.+|.+++++++..++|+|++|+.+.+...+.+++.|+++.|+.+| .+++..++.+|+++|
T Consensus 235 -~~~~~~--~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 235 -PQPSFE--QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHPSPSVLIPALRTV 310 (528)
T ss_dssp -SCCCHH--HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred -CCCcHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-cCCChhHHHHHHHHH
Confidence 333332 3579999999999999999999999999999998888888999999999999999 477889999999999
Q ss_pred hhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCC
Q 010080 321 GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP 399 (518)
Q Consensus 321 ~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~ 399 (518)
+|++.+++..++.+++. |+++.|+.+|.++ ++.++++|+|+|+||+.+++++++.+++.|++|.|+.+|.+++
T Consensus 311 ~nl~~~~~~~~~~~~~~------~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 384 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDH------QALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE 384 (528)
T ss_dssp HHHTTSCHHHHHHHHTT------THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHh------hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence 99999988888888865 5999999999998 8999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC---------
Q 010080 400 FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP--------- 470 (518)
Q Consensus 400 ~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~--------- 470 (518)
++++++|+|+|+|++.. ++ .+++.++++.|++++|+.+|..+|++++..++++|.+|+...+
T Consensus 385 ~~v~~~a~~aL~nl~~~-----~~----~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~ 455 (528)
T 4b8j_A 385 FDIKKEAAWAISNATSG-----GS----HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGD 455 (528)
T ss_dssp HHHHHHHHHHHHHHHHH-----SC----HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHcC-----CC----HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999874 22 3678899999999999999999999999999999999997542
Q ss_pred CCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCCC
Q 010080 471 NHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLD 517 (518)
Q Consensus 471 ~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~~ 517 (518)
.+.+..+++++||+++|+.|++|+|++++++|..|+++||+.++++|
T Consensus 456 ~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~ 502 (528)
T 4b8j_A 456 VNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDT 502 (528)
T ss_dssp CCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC------
T ss_pred ccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence 23567899999999999999999999999999999999999877653
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.8e-62 Score=520.89 Aligned_cols=493 Identities=29% Similarity=0.466 Sum_probs=403.0
Q ss_pred CCCCccCccccccccccc-C-chH-HhhhHHHHHHHhhHhhHHHHHHhhhccCCCC-CCCCCCCCCcccchHHHHHHHhh
Q 010080 1 MADDSLNHHKRDPIKSSV-G-NVA-AQRRRQNAVTVGKERRESLVRAKRLCRVGTS-ADGEVSSDSDMMVDEEQSILEMQ 76 (518)
Q Consensus 1 ~~~~~~~~~r~~~~k~~~-~-~~~-~~rr~~~~~~~rk~~r~~~l~~kR~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 76 (518)
|++.++++.|++.||+++ . .++ ||||++.+++|||+|||++|.|||+.. .. ..++.+++.+. .....+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~ 84 (530)
T 1wa5_B 8 STSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFI--PPTDGADSDEEDES-SVSADQQFYSQ 84 (530)
T ss_dssp ----CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC-----------------------------
T ss_pred CCCCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCC--ccccccccCCchhh-hhhhhhhhhhh
Confidence 667788899999999866 4 333 566667999999999999999888632 11 00111100000 00000011101
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Q 010080 77 TSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG 156 (518)
Q Consensus 77 ~~~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~ 156 (518)
.. +.+..+++.++++|++.+..|+..|+++++.+.++++..+++.|++|.|+++|.+++++.++.+|+|+|++++++
T Consensus 85 ~~---~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~ 161 (530)
T 1wa5_B 85 LQ---QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG 161 (530)
T ss_dssp -----CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred hH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 11 234445555678999999999999999999877788889999999999999999764577888999999999999
Q ss_pred ChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHH
Q 010080 157 KQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS 234 (518)
Q Consensus 157 ~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 234 (518)
+++.+..++ |++|.|+.+|.+ +++.++++|+|+|+||+.+++.+++.+...|++++|+.++.+.+..+++.++|+|+
T Consensus 162 ~~~~~~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 240 (530)
T 1wa5_B 162 TSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 240 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHH
Confidence 988888886 799999999987 78999999999999999999999999999999999999999989999999999999
Q ss_pred HhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchh
Q 010080 235 NLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLI 314 (518)
Q Consensus 235 nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~ 314 (518)
+||.+..+.... ....+++|.|+.++.+++++++..++|+|.+|+.+.++..+.+++.|+++.|+.+|. +++..++.
T Consensus 241 ~L~~~~~~~~~~--~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~-~~~~~v~~ 317 (530)
T 1wa5_B 241 NLCRGKKPQPDW--SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTLVQT 317 (530)
T ss_dssp HHHCCSSSCCCH--HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHH
T ss_pred HHhCCCCCCCcH--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC-CCChhhHH
Confidence 999875444332 335799999999999999999999999999999987788888999999999999994 78889999
Q ss_pred hhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHH
Q 010080 315 PVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHL 394 (518)
Q Consensus 315 ~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~l 394 (518)
+|+++|+|++.+++...+.+++. |+++.|+.+|.++++.++++|+|+|+||+.+++++++.+++.|++|.|+.+
T Consensus 318 ~a~~~L~~l~~~~~~~~~~~~~~------~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l 391 (530)
T 1wa5_B 318 PALRAVGNIVTGNDLQTQVVINA------GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 391 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHc------chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999988877777754 699999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC---
Q 010080 395 LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN--- 471 (518)
Q Consensus 395 L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~--- 471 (518)
|.+++++++++|+|+|+|++... +|. .+++.++++.|+++.|+.+|..++++++..++++|.+++..++.
T Consensus 392 L~~~~~~v~~~a~~aL~~l~~~~-----~~~--~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~ 464 (530)
T 1wa5_B 392 LEVAEYKTKKEACWAISNASSGG-----LQR--PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE 464 (530)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHT-----TTC--THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhcC-----CCc--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999998742 110 15678899999999999999999999999999999999975432
Q ss_pred ------CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCC
Q 010080 472 ------HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGL 516 (518)
Q Consensus 472 ------~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~ 516 (518)
+++...++++||+++|+.|++|++++++++|..+|++||++++++
T Consensus 465 ~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 465 ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp HHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred cccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 346678999999999999999999999999999999999887664
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=7.7e-50 Score=414.58 Aligned_cols=416 Identities=31% Similarity=0.503 Sum_probs=367.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc-CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080 84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKA-GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK 162 (518)
Q Consensus 84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~-g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~ 162 (518)
++.+++.++++|+..+..|+..|+++++.+.++++..+++. |++|.|+++|++++++..+..|+|+|++++.++++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34444445589999999999999999887667888888888 99999999999875577888999999999999888887
Q ss_pred Hhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcC
Q 010080 163 ALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKG 239 (518)
Q Consensus 163 ~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~ 239 (518)
.++ |++|.|+.+|.+ +++.+++.|+|+|+|++.+++..++.++..|++++|+.++.+ .+..+++.++|+|++|+++
T Consensus 102 ~~~~~~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 776 799999999988 789999999999999999999999999999999999999995 6899999999999999987
Q ss_pred CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhh
Q 010080 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS 319 (518)
Q Consensus 240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~ 319 (518)
..+...... ..+++|.|++++.++|++++..++|+|.+|+.+.++..+.+.+.|+++.|+.+| .+++..++..++++
T Consensus 181 ~~~~~~~~~--~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~ 257 (450)
T 2jdq_A 181 KSPPPEFAK--VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRA 257 (450)
T ss_dssp SSSCCCGGG--TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred CCCCCCHHH--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHH
Confidence 534443333 379999999999999999999999999999987777888888999999999999 47888999999999
Q ss_pred hhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCC
Q 010080 320 LGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSP 399 (518)
Q Consensus 320 L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~ 399 (518)
|++++.+++...+.+++. |+++.|+.+|.++++.+++.|+|+|+|++.+++++.+.+++.|++|.|+++|.+++
T Consensus 258 L~~l~~~~~~~~~~~~~~------~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~ 331 (450)
T 2jdq_A 258 VGNIVTGDDIQTQVILNC------SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE 331 (450)
T ss_dssp HHHHTTSCHHHHHHHHTT------THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHhhCChHHHHHHHHC------ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence 999999887777777754 59999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC--------
Q 010080 400 FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN-------- 471 (518)
Q Consensus 400 ~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~-------- 471 (518)
+++|++|+|+|+|++.+ ++ .++++++++.|+++.|+++|..++++++..++++|.+++..++.
T Consensus 332 ~~v~~~a~~~L~~l~~~-----~~----~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 402 (450)
T 2jdq_A 332 FRTRKEAAWAITNATSG-----GS----AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTG 402 (450)
T ss_dssp HHHHHHHHHHHHHHHHH-----CC----HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHcC-----CC----HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccc
Confidence 99999999999999874 12 36778889999999999999999999999999999999975432
Q ss_pred -CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCccCCCCC
Q 010080 472 -HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGEDYGLDE 518 (518)
Q Consensus 472 -~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~~~~~~~ 518 (518)
+++...++++||+++|+.|++|+|.+++++|..+|++||++++++++
T Consensus 403 ~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 450 (450)
T 2jdq_A 403 INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSS 450 (450)
T ss_dssp CCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred hhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccccCC
Confidence 24567899999999999999999999999999999999998887664
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1e-46 Score=386.01 Aligned_cols=366 Identities=21% Similarity=0.216 Sum_probs=295.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCHHHHHHHhcCCCC-----------hHHHHHH
Q 010080 79 SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPI-ETALKAGAIPVLVQCLAFGSP-----------DEQLLEA 146 (518)
Q Consensus 79 ~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~-~~~i~~g~ip~Lv~~L~~~~~-----------~~~~~eA 146 (518)
..++.+.+++.++.+.|++. .+|++++.+.++++ ..++++|++|.||++|+..+. ++++++|
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 34566777777778888873 78888888888888 778899999999999996433 6888999
Q ss_pred HHHHHHHhcCChHHHHHhc--CCh----------HHHHHhhcCCC-CHH-----HHH-------HHHHHHHhhhCCChhh
Q 010080 147 AWCLTNIAAGKQEETKALL--PAL----------PLLIAHLGEKS-SSP-----VAE-------QCAWALGNVAGEGEEF 201 (518)
Q Consensus 147 ~~~L~nia~~~~~~~~~v~--~~v----------~~Lv~lL~~~~-~~~-----v~~-------~a~~~L~nla~d~~~~ 201 (518)
+|+|+||++++++.++... +++ +.+++++.++. +.+ +++ +|+|+|+||+.+ +++
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~ 181 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH 181 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence 9999999999998888765 355 66777787632 122 555 999999999885 899
Q ss_pred HHHHHhcCChhHHHhhhCC-----------CChhHHHHHHHHHHHhhcCCCCCchhhHHH-hhchHHHHHHHhccCChhH
Q 010080 202 RNVLLSQGALPPLARMMLP-----------NKGSTVRTAAWALSNLIKGPDPKPATELIK-VDGLLDAILRHLKRADEEL 269 (518)
Q Consensus 202 r~~~~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~-~~~~l~~L~~lL~~~d~~v 269 (518)
|+.+.+.|++++|+.+|.. .++.++++|+|+|.|||.+++ ..+..+. ..|++|.|+++|.++++++
T Consensus 182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~--~~k~~i~~~~GaIp~LV~LL~s~~~~v 259 (458)
T 3nmz_A 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--ANKATLCSMKGCMRALVAQLKSESEDL 259 (458)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHCHHHHHHHHHGGGCSCHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCc--ccHHHHHHcCCcHHHHHHHHhCCCHHH
Confidence 9999999999999999942 247789999999999998753 2343442 4577999999999999999
Q ss_pred HHHHHHHHHHhhcC-CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCC-CcccceeeccCCCchhhhHH
Q 010080 270 TTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD-SSTISDVLVPGHGITDQVIA 347 (518)
Q Consensus 270 ~~~a~~~L~~L~~~-~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~-~~~~~~~i~~G~~~~~~~l~ 347 (518)
+..++|+|.||+.+ +++..+.+.+.|+++.|+++|..+.+..++.+++++|+|++.+. +.+...+... |++|
T Consensus 260 ~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~------Gal~ 333 (458)
T 3nmz_A 260 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD------GALA 333 (458)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHST------THHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhc------CcHH
Confidence 99999999999985 45678889999999999998755667889999999999999844 3343333243 6999
Q ss_pred HHHHHhccChh----hhHHHHHHHHHHhcc---CCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC
Q 010080 348 VLVKCLKSEHR----VLKKEAAWVLSNIAA---GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG 420 (518)
Q Consensus 348 ~L~~lL~~~~~----~i~~~a~~~Lsnl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~ 420 (518)
.|+.+|.+.+. .++++|+|+|+||+. +++++++.++++|++|.|+.+|.+++.+++++|+|+|+|++..
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~---- 409 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR---- 409 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS----
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC----
Confidence 99999987754 489999999999997 7889999999999999999999999999999999999999863
Q ss_pred CCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 421 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 421 ~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
+ .++...+++.|++++|+++|.++++.++..++.+|.+|+..-
T Consensus 410 --~----~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 410 --N----PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp --C----HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred --C----HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 2 477889999999999999999999999999999999999754
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5.9e-43 Score=363.10 Aligned_cols=362 Identities=14% Similarity=0.113 Sum_probs=304.8
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHH
Q 010080 126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 203 (518)
Q Consensus 126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 203 (518)
.+|.|+.+|++++ +..+..|+|+|.+++.+++..+..++ |++|.|+.+|.+ +++++++.|+|+|+||+.++++++.
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999876 56788999999999988777776776 899999999997 7899999999999999998899999
Q ss_pred HHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc--------c--------CC
Q 010080 204 VLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--------R--------AD 266 (518)
Q Consensus 204 ~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~--------~--------~d 266 (518)
.+.+.|++|+|+.+|. +++..+++.++|+|+||+.+ +. .+..+.. |++|.|+++|. + .+
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~-~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DE-LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SS-THHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HH-hHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence 9999999999999999 77999999999999999976 23 3444545 99999999993 2 35
Q ss_pred hhHHHHHHHHHHHhhcCCchhhhHHHhc-CchHHHHHHHcc-----CCCccchhhhhhhhhhhhcC--------------
Q 010080 267 EELTTEVAWVVVYLSALSNVATSLLVKS-GVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAG-------------- 326 (518)
Q Consensus 267 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~~~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~-------------- 326 (518)
++++..++|+|+||+.+ ++..+.+.+. |+++.|+.+|.. ..+..++..++.+|.|++..
T Consensus 157 ~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 67888999999999986 7788889987 999999999952 14567788888888888631
Q ss_pred ------------------------------------CCcccceeeccCCCchhhhHHHHHHHhccC-hhhhHHHHHHHHH
Q 010080 327 ------------------------------------DSSTISDVLVPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLS 369 (518)
Q Consensus 327 ------------------------------------~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Ls 369 (518)
.+..++.++ +.++++.|+.+|.++ ++.+++.|+|+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~l~~L~~lL~~~~~~~~~e~a~~aL~ 309 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY------HSDAIRTYLNLMGKSKKDATLEACAGALQ 309 (457)
T ss_dssp TC----------------------------CCCCCSSCCGGGGGG------SHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh------CcchHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 112333344 357899999999765 5789999999999
Q ss_pred HhccCCHH---HH-HHHH-hCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHH
Q 010080 370 NIAAGSVE---HK-QLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFI 444 (518)
Q Consensus 370 nl~~~~~~---~~-~~li-~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~ 444 (518)
||++++.. ++ +.++ +.|++|.|+++|.+++.+++++|+|+|+|++.+ .+.+.++..|++++|+
T Consensus 310 nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~------------~~~~~~i~~~~i~~Lv 377 (457)
T 1xm9_A 310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH------------PLLHRVMGNQVFPEVT 377 (457)
T ss_dssp HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS------------GGGHHHHHHHTHHHHH
T ss_pred HhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC------------HHHHHHHHHhhhHHHH
Confidence 99997533 23 4455 689999999999999999999999999999874 2346677789999999
Q ss_pred HhhccCCH------HHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC-CHHHHHHHHHHHHhhcCccC
Q 010080 445 DLVRSADI------EAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE-NEDLRNMANGLVDKYFGEDY 514 (518)
Q Consensus 445 ~lL~~~d~------~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~-~~~i~~~a~~il~~~f~~~~ 514 (518)
++|..+++ +++..++.+|.+|+... ......+.++||+++|.+|+.|+ ++++|+.|..+|.+||.+.+
T Consensus 378 ~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~--~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQ--PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC--THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HhccCCCCCCCCcHHHHHHHHHHHHHHHhcC--HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99998753 68889999999998654 34678889999999999999999 99999999999999998764
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-43 Score=381.47 Aligned_cols=365 Identities=17% Similarity=0.103 Sum_probs=309.3
Q ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh
Q 010080 81 VEELKSAVAYHGKG--AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ 158 (518)
Q Consensus 81 ~~~l~~~l~~~~s~--~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~ 158 (518)
++.+.++|. ++ |.+.+..|+..|.. |+...+.....+.+.|++|.|+++|++++ ..+++.|+|+|+||+.+++
T Consensus 379 v~~l~~lL~---~~~~d~~v~~~AveaLay-LS~~~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 379 AEACRRFLI---KPGKDKDIRRWAADGLAY-LTLDAECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHH---CSSCCSSHHHHHHHHHHH-HTTSHHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhc---CCCCCHHHHHHHHHHHHH-HhCCcHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCch
Confidence 455555554 55 78899999999999 56654333333445899999999999765 5688999999999998652
Q ss_pred -----------------------------HHH---HHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHH
Q 010080 159 -----------------------------EET---KALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNV 204 (518)
Q Consensus 159 -----------------------------~~~---~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~ 204 (518)
..+ +.++ |++|.|+.+|.+ +++.++++|+|+|+||+++ +++|..
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~d-~~~r~~ 531 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT-ESHNSQELIARVLNAVCGL-KELRGK 531 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 112 5555 799999999988 7899999999999999985 679999
Q ss_pred HHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh-hHHHHHHHHHHHhhcC
Q 010080 205 LLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-ELTTEVAWVVVYLSAL 283 (518)
Q Consensus 205 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~ 283 (518)
++++|++|+|+.++.+.+...+++|+|+|+|||.+.+|...+......+++|.|+.+|.+++. ....+++|+|.||+.+
T Consensus 532 Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 532 VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611 (810)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999875543322111124799999999986544 4457899999999998
Q ss_pred CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHH
Q 010080 284 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE 363 (518)
Q Consensus 284 ~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~ 363 (518)
+++..+.+++.|+++.|+.+|. ++++.++.+|+++|+|++.+++.+++.+.. .|.++.|+.++.+.+..++++
T Consensus 612 ~d~~~~~Ii~aG~l~~Lv~LL~-s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~------~g~l~~Lv~LL~s~d~~vq~~ 684 (810)
T 3now_A 612 NESVRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSEDVIKMFEGN------NDRVKFLALLCEDEDEETATA 684 (810)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHH-SCCTTHHHHHHHHHHHHTTSHHHHHHHHSS------SSHHHHHHHGGGCSSHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCChHHHHHHHhc------cCcHHHHHHHhcCCCHHHHHH
Confidence 8888899999999999999995 788999999999999999988766655422 369999999999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHh-CCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHH
Q 010080 364 AAWVLSNIAAGSVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSG 442 (518)
Q Consensus 364 a~~~Lsnl~~~~~~~~~~li~-~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~ 442 (518)
|+|+|+||+++++.+++.+++ .|++|+|+++|.+++.+++++|+|+|+|++.+. .++..++++.|++++
T Consensus 685 Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s----------~e~~~~l~e~G~i~~ 754 (810)
T 3now_A 685 CAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG----------EEIAKKLFETDIMEL 754 (810)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC----------HHHHHHHHTSTHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC----------HHHHHHHHHCCCHHH
Confidence 999999999988899999999 899999999999999999999999999998731 477899999999999
Q ss_pred HHHhhccC---CHHHHHHHHHHHHHHHccC
Q 010080 443 FIDLVRSA---DIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 443 L~~lL~~~---d~~~~~~~l~~l~~il~~~ 469 (518)
|+++|..+ +++++..++++|+++++.+
T Consensus 755 L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 755 LSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 99999765 6899999999999999754
No 9
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.7e-39 Score=337.04 Aligned_cols=361 Identities=17% Similarity=0.180 Sum_probs=299.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080 81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 160 (518)
Q Consensus 81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~ 160 (518)
++.++.++. ++|++.+..|+..|+++ +....+....+++.|++|.|+++|++++ +..++.|+|+|+|++.+++++
T Consensus 4 l~~lv~~L~---s~~~~~q~~A~~~L~~l-~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 4 IPKAVQYLS---SQDEKYQAIGAYYIQHT-CFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp HHHHHHHHH---SSCTHHHHHHHHHHHHH-TSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHC---CCCHHHHHHHHHHHHHH-HcCChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHH
Confidence 345566554 88999999999999995 4433333447889999999999999755 678889999999999998889
Q ss_pred HHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC--------C--------CC
Q 010080 161 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML--------P--------NK 222 (518)
Q Consensus 161 ~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~--------~--------~~ 222 (518)
+..++ |++|.|+.+|..+++++++++|+|+|+||+.+ ++.|..+++ |++|+|+.++. + .+
T Consensus 79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence 99887 89999999998447899999999999999996 789999999 99999999993 2 24
Q ss_pred hhHHHHHHHHHHHhhcCCCCCchhhHHHhh-chHHHHHHHhcc------CChhHHHHHHHHHHHhhcC------------
Q 010080 223 GSTVRTAAWALSNLIKGPDPKPATELIKVD-GLLDAILRHLKR------ADEELTTEVAWVVVYLSAL------------ 283 (518)
Q Consensus 223 ~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~-~~l~~L~~lL~~------~d~~v~~~a~~~L~~L~~~------------ 283 (518)
..++++++|+|+|||.+ + ..++.+... |++|.|+.+|.+ .+..+...++++|.+|+..
T Consensus 157 ~~v~~~a~~aL~nLs~~--~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~ 233 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSA--D-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233 (457)
T ss_dssp HHHHHHHHHHHHHHTTS--H-HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHHccC--H-HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence 67888999999999975 3 355566565 999999999986 4667889999999998621
Q ss_pred --------------------------------------CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080 284 --------------------------------------SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 284 --------------------------------------~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 325 (518)
.+...+.+++.|+++.|+.+|..+.++.++.+|+++|+|++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 122445677788999999999766778899999999999999
Q ss_pred CCCccc----ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCCh-
Q 010080 326 GDSSTI----SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPF- 400 (518)
Q Consensus 326 ~~~~~~----~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~- 400 (518)
++.... +.++. +.|++|.|+.+|.+++..++++|+|+|+|++.+. +.+.++..|++|+|+++|.++++
T Consensus 314 ~~~~~~~~~~~~~v~-----~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~ 386 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGL-----KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGN 386 (457)
T ss_dssp CSSSHHHHHHHHHHT-----TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSC
T ss_pred CcCcchHHHHHHHHH-----HcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCC
Confidence 876532 33342 2368999999999999999999999999998753 55667777899999999988653
Q ss_pred -----hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC-CHHHHHHHHHHHHHHHcc
Q 010080 401 -----DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA-DIEAARLGLQFMELVLRG 468 (518)
Q Consensus 401 -----~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~-d~~~~~~~l~~l~~il~~ 468 (518)
++...++++|.|++.+. .++.+.+.+.|++++|++++.++ ++++.+.|..+|++++..
T Consensus 387 ~~~~~~v~~~~l~~l~ni~~~~----------~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 387 TSNSEDILSSACYTVRNLMASQ----------PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp STTHHHHHHHHHHHHHHHHTTC----------THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred CCCcHHHHHHHHHHHHHHHhcC----------HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 68889999999998642 26778899999999999999999 899999999999998753
No 10
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=344.92 Aligned_cols=407 Identities=17% Similarity=0.201 Sum_probs=330.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080 84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA 163 (518)
Q Consensus 84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~ 163 (518)
+..+++.++++++..+..|+..|+++.+.. ......+++.|++|.|+.+|++++ ...+..++.+|++++.++++.+..
T Consensus 100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~~ 177 (644)
T 2z6h_A 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI 177 (644)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHHHH
Confidence 444555667899999999999999976654 345567778999999999999765 444445677999999988888888
Q ss_pred hc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080 164 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 164 v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 241 (518)
++ |+++.|+.+|.+.....+++.++.+|.|++. ++..|..+++.|+++.|+.++.+.+..+++.++|+|.|||+...
T Consensus 178 i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 256 (644)
T 2z6h_A 178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 256 (644)
T ss_dssp HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence 77 7999999999986678899999999999997 77899999999999999999999999999999999999998642
Q ss_pred CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCC-ccchhhhhhhh
Q 010080 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS-LQLLIPVLRSL 320 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~-~~v~~~al~~L 320 (518)
. .+. ..+++|.|++++.+++++++..++|+|.+|+.++++..+.+.+.|+++.|+.+|...++ ..++.+++++|
T Consensus 257 ~---~~~--~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 257 K---QEG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp T---CCS--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h---hhh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 2 122 35899999999999999999999999999999877888999999999999999964333 68999999999
Q ss_pred hhhhcCCCc--ccce-eeccCCCchhhhHHHHHHHhccCh-hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc
Q 010080 321 GNLVAGDSS--TISD-VLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 396 (518)
Q Consensus 321 ~nl~~~~~~--~~~~-~i~~G~~~~~~~l~~L~~lL~~~~-~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~ 396 (518)
+|++..+.. +.+. +++ .++++.|+.+|.+++ +.++++|+|+|+||+.+... .+.+++.|++|.|+++|.
T Consensus 332 ~nL~~~~~~~~~~q~~v~~------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHH------TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHH------ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHh
Confidence 999875432 3333 443 469999999999875 69999999999999987644 488999999999999999
Q ss_pred CCChhHHHHHHHHHHH--hcCCCCCCCCCchhHH--------------HHHHHHHhcCchHHHHHhhccCCHHHHHHHHH
Q 010080 397 TSPFDIKKEVAYVLGN--LCVSPTEGEGKPKLIQ--------------EHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ 460 (518)
Q Consensus 397 ~~~~~v~~eA~~aL~n--l~~~~~~~~~~~~~~~--------------~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~ 460 (518)
+.++++|++|+|+++| ++.+ ++++++. +....+.+.|++++|+.+|.+.++.++..++.
T Consensus 405 ~~~~~vr~~a~~al~n~~~~~~-----~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~ 479 (644)
T 2z6h_A 405 RAHQDTQRRTSMGGTQQQFVEG-----VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 479 (644)
T ss_dssp HHHHHHTTC----------CCS-----SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred ccchhhhhHhhhccccchhccc-----ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 9888888888888887 4321 2221110 12246779999999999999999999999999
Q ss_pred HHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHH------------------HHH--HHHHHHhhcCcc
Q 010080 461 FMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDL------------------RNM--ANGLVDKYFGED 513 (518)
Q Consensus 461 ~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i------------------~~~--a~~il~~~f~~~ 513 (518)
+|.++... .+.+..++++||++.|..|++++|+++ |++ +.+|+++||..+
T Consensus 480 aL~~l~~~---~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 480 VLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HHHHHHTS---HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHcC---HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 99998742 346788999999999999999999999 544 677888888765
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.4e-38 Score=336.89 Aligned_cols=405 Identities=17% Similarity=0.200 Sum_probs=329.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080 84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA 163 (518)
Q Consensus 84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~ 163 (518)
++.+++.++++++..+..|+..|+++.+... .....+++.|++|.|+.+|.+++ ...+..++.+|.+++.++++....
T Consensus 103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4445556678999999999999999766543 34566778999999999998754 455556888999999988888888
Q ss_pred hc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080 164 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 164 v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 241 (518)
+. |++|.|+.+|.++.....++.+..+|.|++. ++..+..+.+.|++++|+.++.+++..+++.++|+|.||++...
T Consensus 181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence 77 7999999999886677888999999999997 67899999999999999999999999999999999999998742
Q ss_pred CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccC-CCccchhhhhhhh
Q 010080 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS-NSLQLLIPVLRSL 320 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~-~~~~v~~~al~~L 320 (518)
+ .+. ..+++|.|++++.+++++++..++|+|++|+.++++..+.+.+.|+++.|+.+|..+ .+..++.+++++|
T Consensus 260 ~---~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 260 K---QEG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp T---CSC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h---hHH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 2 122 358999999999999999999999999999998778899999999999999999642 3468899999999
Q ss_pred hhhhcCCCcc---cceeeccCCCchhhhHHHHHHHhccCh-hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc
Q 010080 321 GNLVAGDSST---ISDVLVPGHGITDQVIAVLVKCLKSEH-RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 396 (518)
Q Consensus 321 ~nl~~~~~~~---~~~~i~~G~~~~~~~l~~L~~lL~~~~-~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~ 396 (518)
+|++.+++.. ...+++ .|++|.|+.+|.+++ +.++++++|+|+|++.+.. ..+.+++.|++|.|+++|.
T Consensus 335 ~nl~~~~~~~~~~~~~i~~------~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~ 407 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLV 407 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHH------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHH------cCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHH
Confidence 9998765431 234554 368999999999876 5999999999999998754 4578899999999999999
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCCCCchhH--------------HHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHH
Q 010080 397 TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI--------------QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFM 462 (518)
Q Consensus 397 ~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~--------------~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l 462 (518)
++++++|++|+|+++|.+.. .++++.++ .+....+.+.|+++.|+.++.+++++++..+..+|
T Consensus 408 ~~~~~v~~~a~~~l~n~~~~---~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l 484 (529)
T 1jdh_A 408 RAHQDTQRRTSMGGTQQQFV---EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484 (529)
T ss_dssp HHHHHHC-----------CB---TTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHhHHHHHHHhcccCchhhh---ccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHH
Confidence 99999999999999993221 12333221 12335578899999999999999999999999999
Q ss_pred HHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080 463 ELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 509 (518)
Q Consensus 463 ~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~ 509 (518)
.++.. +..++..+++.||++.|+.|++|+|++|+++|..+|.++
T Consensus 485 ~~l~~---~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 485 CELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHTT---SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhc---CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 99863 234678899999999999999999999999999999864
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.6e-38 Score=334.73 Aligned_cols=365 Identities=20% Similarity=0.312 Sum_probs=317.9
Q ss_pred CHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080 126 AIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 202 (518)
Q Consensus 126 ~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 202 (518)
.++.+|+.|.+++ ...|++|+..+..+.+... ...+.++ |+||.|+.+|.++++++++..|+|+|+|||.++++.+
T Consensus 58 ~i~~~v~~l~s~d-~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 58 SVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 4677888998876 6678999999998765432 2366777 8999999999876779999999999999999899999
Q ss_pred HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh-----hHHHHHHHHH
Q 010080 203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-----ELTTEVAWVV 277 (518)
Q Consensus 203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~-----~v~~~a~~~L 277 (518)
..+++.|++|.|+.+|.+++..+++.|+|+|+||+... ...++.+...|+++.|+.++...+. .++..++|+|
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999642 3456677788999999999986653 4678999999
Q ss_pred HHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh
Q 010080 278 VYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH 357 (518)
Q Consensus 278 ~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~ 357 (518)
++++.+...........|+++.|+.+| .+++.+++..++++|++++.++++..+.+++. |+++.|+.+|.+.+
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~------g~i~~Lv~lL~~~~ 287 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKK------GVVPQLVKLLGATE 287 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT------TCHHHHHHHHTCSC
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhc------ccchhhhhhhcCCC
Confidence 999987665555555678999999998 58889999999999999998887777777754 59999999999999
Q ss_pred hhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhc
Q 010080 358 RVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGR 437 (518)
Q Consensus 358 ~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~ 437 (518)
..++..|+++|+||+.+++.+.+.+++.|+++.|+.+|++++..++++|+|+|+|++.+. .++...+++.
T Consensus 288 ~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~----------~~~~~~v~~~ 357 (510)
T 3ul1_B 288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR----------QDQIQQVVNH 357 (510)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC----------HHHHHHHHHT
T ss_pred hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc----------HHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999998742 4778899999
Q ss_pred CchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 010080 438 GCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG 511 (518)
Q Consensus 438 g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~ 511 (518)
|+++.|+.+|.+++.+++..+.++|.++...+.. .....+.+.|+++.|.+|..++++++...+...|.+++.
T Consensus 358 g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~-~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH-HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876432 334567789999999999999999999999888877653
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=8.6e-39 Score=344.87 Aligned_cols=397 Identities=15% Similarity=0.081 Sum_probs=320.5
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHc----CCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCChHHHH
Q 010080 89 AYHGKGAMQKRVNALRELRRLLSRFE-FPPIETALKA----GAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGKQEETK 162 (518)
Q Consensus 89 ~~~~s~~~~~~~~a~~~lr~lls~~~-~~~~~~~i~~----g~ip~Lv~~L~~~~-~~~~~~eA~~~L~nia~~~~~~~~ 162 (518)
..+++++...+..|+..|+++-+... +++. ..++. .++|.|+++|.++. +++.+..|+|+|.+++.+......
T Consensus 337 ~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~-~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~ 415 (810)
T 3now_A 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAI-RPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEK 415 (810)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTTTTTTSC-CSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccCccc-cchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34457888889999999999754322 2221 12223 34778889998761 345667799999999977654444
Q ss_pred Hhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-----------------------------hhH---HHHHhc
Q 010080 163 ALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-----------------------------EFR---NVLLSQ 208 (518)
Q Consensus 163 ~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-----------------------------~~r---~~~~~~ 208 (518)
.+. |++|.|+.+|.+ ++..++..|+|+|+||+.+.+ ..+ +.+++.
T Consensus 416 lv~d~g~Ip~LV~LL~s-~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea 494 (810)
T 3now_A 416 LIEDKASIHALMDLARG-GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE 494 (810)
T ss_dssp HHHCHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHccchHHHHHHHhCC-CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC
Confidence 443 699999999987 788999999999999997542 123 688999
Q ss_pred CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080 209 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 288 (518)
Q Consensus 209 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 288 (518)
|++|+|+.++.++++.+++.|+|+|+||+.. ..++..+...|++|.|+.+|.++++..+..|+|+|++|+.+.+...
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d---~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCGL---KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence 9999999999999999999999999999953 2366777789999999999999999999999999999997433221
Q ss_pred h--HHHhcCchHHHHHHHccCCCc-cchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHH
Q 010080 289 S--LLVKSGVLQLLVERLATSNSL-QLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAA 365 (518)
Q Consensus 289 ~--~~~~~g~~~~Lv~lL~~~~~~-~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~ 365 (518)
. .....|+++.|+.+|. ++.. .....|+++|+|++.+++...+.+++. |+++.|+.+|.++++.+++.|+
T Consensus 572 ~~~~~~~~~aIppLv~LL~-~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a------G~l~~Lv~LL~s~~~~Vq~~A~ 644 (810)
T 3now_A 572 SFSGQRSLDVIRPLLNLLQ-QDCTALENFESLMALTNLASMNESVRQRIIKE------QGVSKIEYYLMEDHLYLTRAAA 644 (810)
T ss_dssp HTTTHHHHHTHHHHHHTTS-TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHHHHSCCTTHHHHHH
T ss_pred hhcchhhhcHHHHHHHHhC-CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc------CCHHHHHHHHcCCCHHHHHHHH
Confidence 1 0012468999999984 4322 334589999999999987777778865 5999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHh-CCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-cCchHHH
Q 010080 366 WVLSNIAAGSVEHKQLIHS-SEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG-RGCLSGF 443 (518)
Q Consensus 366 ~~Lsnl~~~~~~~~~~li~-~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~-~g~i~~L 443 (518)
|+|+||+.+. +....+++ .|.++.|+.++.+.+..+|++|+|+|+|++.+ + ..+++.+++ .|++++|
T Consensus 645 ~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~------s----~~~~~~ii~~~g~I~~L 713 (810)
T 3now_A 645 QCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV------S----VKCCEKILAIASWLDIL 713 (810)
T ss_dssp HHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------C----HHHHHHHHTSTTHHHHH
T ss_pred HHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC------C----HHHHHHHHHHcCCHHHH
Confidence 9999999865 45555665 79999999999999999999999999999873 2 367899998 8999999
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcC---CCHHHHHHHHHHHHhhc
Q 010080 444 IDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH---ENEDLRNMANGLVDKYF 510 (518)
Q Consensus 444 ~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~---~~~~i~~~a~~il~~~f 510 (518)
+.+|.++|.+++..++++|.|+..+. ......+.++||++.|.+|... .+.++++.|.+.|+..-
T Consensus 714 v~LL~s~d~~vq~~A~~aL~NL~~~s--~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 714 HTLIANPSPAVQHRGIVIILNMINAG--EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999998743 2346788899999999998643 48999999988887643
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.6e-37 Score=329.04 Aligned_cols=366 Identities=18% Similarity=0.296 Sum_probs=318.7
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080 124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE 200 (518)
Q Consensus 124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~ 200 (518)
.-.+|.|++.|.+++ +..+..|+|+|.+++++.. .....++ |++|.|+.+|.+++++.++..|+|+|+||+.++++
T Consensus 73 ~~~l~~lv~~L~s~~-~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 73 LESLPAMIGGVYSDD-NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp --CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 346999999998765 6678899999999987654 4556665 79999999998844499999999999999998899
Q ss_pred hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCChhHHHHHHHHHHH
Q 010080 201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVY 279 (518)
Q Consensus 201 ~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~ 279 (518)
.+..++..|++|+|+.++.+++..++..|+|+|+||+... ...+..+...|++|.|+.+| .+.++.++..++|+|++
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS--PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC--HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC--hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999653 23455666789999999999 57789999999999999
Q ss_pred hhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhh
Q 010080 280 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 359 (518)
Q Consensus 280 L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~ 359 (518)
|+.+.+ ........|+++.|+.+| .+++..++..++++|++++.+.+...+.+++. |+++.|+.+|.++++.
T Consensus 230 L~~~~~-~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~------g~v~~Lv~lL~~~~~~ 301 (528)
T 4b8j_A 230 FCRGKP-QPSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEA------GVCPRLVELLLHPSPS 301 (528)
T ss_dssp HHCSSS-CCCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHT------TCHHHHHHHTTCSCHH
T ss_pred HHcCCC-CCcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc------CHHHHHHHHHcCCChh
Confidence 998653 333445589999999999 57889999999999999998887777777754 5999999999999999
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC-ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC
Q 010080 360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS-PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG 438 (518)
Q Consensus 360 i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g 438 (518)
++..|+|+|+||+.+++...+.+++.|++|.|+.+|.++ +..++++|+|+|+|++.+ + .+++..+++.|
T Consensus 302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~------~----~~~~~~~~~~~ 371 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG------N----KDQIQAVINAG 371 (528)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS------C----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC------C----HHHHHHHHHCC
Confidence 999999999999999999999999999999999999998 999999999999999873 2 46778999999
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG 511 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~ 511 (518)
+++.|+.+|.+++++++..++.+|.++...+.. .....+.+.|+++.|..+..++++++...|...|.+++.
T Consensus 372 ~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~-~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 372 IIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH-DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876421 234566688999999999999999999999888887764
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.6e-37 Score=328.79 Aligned_cols=365 Identities=21% Similarity=0.313 Sum_probs=318.2
Q ss_pred CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhh
Q 010080 125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK-QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEF 201 (518)
Q Consensus 125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~-~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~ 201 (518)
..+|.+++.+.+++ ...|++|+..+..+.+.. ....+.++ |+||.|+.+|..++++.++..|+|+|+||+.++++.
T Consensus 76 ~~l~~lv~~l~s~d-~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 76 WSVEDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp CCHHHHHHHHTSSC-HHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 35788888998766 567789999999876433 33456666 899999999987678999999999999999989999
Q ss_pred HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh-----hHHHHHHHH
Q 010080 202 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE-----ELTTEVAWV 276 (518)
Q Consensus 202 r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~-----~v~~~a~~~ 276 (518)
+..+++.|++|+|+.++.+++..+++.|+|+|+||+... ...++.+...|+++.|+.+|...+. .++..++|+
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~--~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 232 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG--SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 232 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC--HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999642 3456677788999999999986553 468899999
Q ss_pred HHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC
Q 010080 277 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE 356 (518)
Q Consensus 277 L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~ 356 (518)
|++++.+...........|+++.|+.+| .+++++++..++++|++++.+++...+.+++. |+++.|+.+|.++
T Consensus 233 L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~------g~i~~Lv~lL~~~ 305 (529)
T 3tpo_A 233 LSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKK------GVVPQLVKLLGAT 305 (529)
T ss_dssp HHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTT------TCHHHHHHHHTCS
T ss_pred HHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhc------cchHHHHHHhcCC
Confidence 9999987665555566678999999998 58899999999999999999887777777764 5999999999999
Q ss_pred hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q 010080 357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG 436 (518)
Q Consensus 357 ~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~ 436 (518)
+..++..|+++|+||+.+++.+.+.+++.|+++.|+.+|.+++..++++|+|+|+|++.+. .++...+++
T Consensus 306 ~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~----------~~~~~~v~~ 375 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR----------QDQIQQVVN 375 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSC----------HHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhccc----------HHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998742 477888999
Q ss_pred cCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080 437 RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510 (518)
Q Consensus 437 ~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f 510 (518)
.|+++.|+.+|.+++.+++..+.++|.++...+.. .....+.+.|+++.|.+|..++++++...+...|.+++
T Consensus 376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~-~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV-EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH-HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876432 23456778999999999999999999999888887765
No 16
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.1e-37 Score=325.98 Aligned_cols=362 Identities=20% Similarity=0.224 Sum_probs=293.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC-ChHHHH
Q 010080 84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG-KQEETK 162 (518)
Q Consensus 84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~-~~~~~~ 162 (518)
++.+++.+.+++++.+.+|+..|+++ +.........+++.|+||.||++|.+++ ..++..|+|+|.||+.+ +++++.
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~L-a~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHL-CYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHH-HTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH-HcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHHH
Confidence 34444455689999999999999995 5444566678889999999999999865 67888999999999986 578888
Q ss_pred Hhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC------------------CCC
Q 010080 163 ALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML------------------PNK 222 (518)
Q Consensus 163 ~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~------------------~~~ 222 (518)
.++ |+||.|+.+|.++.+.+++++|+|+|.|++. +++++..++. +++|+|++++. .++
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 887 8999999999875678999999999999998 6788888885 57999999871 235
Q ss_pred hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc------CChhHHHHHHHHHHHhhcCC------------
Q 010080 223 GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR------ADEELTTEVAWVVVYLSALS------------ 284 (518)
Q Consensus 223 ~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~------~d~~v~~~a~~~L~~L~~~~------------ 284 (518)
..++++++|+|.||+... +.....++...|+++.|+.++.+ .+...+.+|+|+|.||+...
T Consensus 206 ~~V~~nAa~~L~NLs~~~-~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSER-SEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp HHHHHHHHHHHHHHTSSC-HHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred HHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 799999999999999653 12223344345778899999975 46689999999999999641
Q ss_pred -------------chhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccc---ceeeccCCCchhhhHHH
Q 010080 285 -------------NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI---SDVLVPGHGITDQVIAV 348 (518)
Q Consensus 285 -------------~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~---~~~i~~G~~~~~~~l~~ 348 (518)
...++.+...++++.|+.+|..+.++.++++|+++|.|++.+..... +.++. ..+++|.
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~-----~~~glp~ 359 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR-----QEKALSA 359 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT-----SHHHHHH
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH-----HcCcHHH
Confidence 11233344556778889999666788999999999999998864322 22332 3578999
Q ss_pred HHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC--------ChhHHHHHHHHHHHhcCCCCCC
Q 010080 349 LVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS--------PFDIKKEVAYVLGNLCVSPTEG 420 (518)
Q Consensus 349 L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~--------~~~v~~eA~~aL~nl~~~~~~~ 420 (518)
|+.+|.+++..+++.|+|+|+||+.+.. .+.+++.|++|.|+++|.++ ..++...|+|+|.|++..
T Consensus 360 Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~---- 433 (584)
T 3l6x_A 360 IADLLTNEHERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE---- 433 (584)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC----
Confidence 9999999999999999999999998753 34566889999999999876 357899999999999864
Q ss_pred CCCchhHHHHHHHHHhcCchHHHHHhhccC--CHHHHHHHHHHHHHHHc
Q 010080 421 EGKPKLIQEHLVSLVGRGCLSGFIDLVRSA--DIEAARLGLQFMELVLR 467 (518)
Q Consensus 421 ~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--d~~~~~~~l~~l~~il~ 467 (518)
+ .++.+.+++.|+|+.|+++|.+. .+.+++.|..+|.++..
T Consensus 434 --~----~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 434 --N----LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp --C----HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred --C----HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 2 47788999999999999999986 78999999999999974
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.4e-37 Score=323.42 Aligned_cols=371 Identities=18% Similarity=0.196 Sum_probs=301.1
Q ss_pred HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCC-Ch
Q 010080 123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGE-GE 199 (518)
Q Consensus 123 ~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d-~~ 199 (518)
+.+.+|.||++|.+++ +..|++|+|+|++++.++.+.+..++ |+||.|+.+|.+ ++.+++++|+|+|+||+.. ++
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCH
Confidence 5889999999999765 67889999999999999999998887 799999999998 7899999999999999984 78
Q ss_pred hhHHHHHhcCChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc---------------
Q 010080 200 EFRNVLLSQGALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK--------------- 263 (518)
Q Consensus 200 ~~r~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~--------------- 263 (518)
++|..+.+.|+||+|+.+|.+ .+..++++++|+|+||+..+ .....++ .+++|.|++++.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~k~~I~--~~alp~Lv~LL~~p~sg~~~~~~~~~k 199 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SIKMEIV--DHALHALTDEVIIPHSGWEREPNEDCK 199 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GGHHHHH--HHTHHHHHHHTHHHHHCCC--------
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhhHHHH--hccHHHHHHHHhccccccccccccccc
Confidence 999999999999999999996 57899999999999999743 3333343 468999999872
Q ss_pred ---cCChhHHHHHHHHHHHhhcCCchhhhHHHh-cCchHHHHHHHcc-----CCCccchhhhhhhhhhhhcCCCccc---
Q 010080 264 ---RADEELTTEVAWVVVYLSALSNVATSLLVK-SGVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAGDSSTI--- 331 (518)
Q Consensus 264 ---~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~~~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~~~~~~--- 331 (518)
..|++++..++|+|.||+..+++..+.+.+ .|+++.|+.+|.. ..+...+..|+++|.|++...+...
T Consensus 200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~ 279 (584)
T 3l6x_A 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQA 279 (584)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTC
T ss_pred ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccch
Confidence 236799999999999999877666888887 4667899999853 2456788999999999996621110
Q ss_pred ---ce----------eeccCC-C--chhhhHHHHHHHhc-cChhhhHHHHHHHHHHhccCCH---HHHHHHH-hCCCHHH
Q 010080 332 ---SD----------VLVPGH-G--ITDQVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSV---EHKQLIH-SSEALAL 390 (518)
Q Consensus 332 ---~~----------~i~~G~-~--~~~~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~---~~~~~li-~~~~i~~ 390 (518)
.. +.+.++ . +..++++.|+.+|. +.++.+++.|+|+|+||+++.. ..++.++ +.+++|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~ 359 (584)
T 3l6x_A 280 ERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSA 359 (584)
T ss_dssp CC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHH
T ss_pred hhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHH
Confidence 00 011111 0 23467899999996 4578999999999999998762 2334444 4688999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC--------CHHHHHHHHHHH
Q 010080 391 LLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA--------DIEAARLGLQFM 462 (518)
Q Consensus 391 Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--------d~~~~~~~l~~l 462 (518)
|+.+|.+++..+++.|+|+|.||+.++. .+..+..|+++.|+.+|.++ ..+++..++.+|
T Consensus 360 Lv~LL~s~~~~v~~~A~~aL~nLs~~~~------------~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL 427 (584)
T 3l6x_A 360 IADLLTNEHERVVKAASGALRNLAVDAR------------NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI 427 (584)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHTTCS------------CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCChh------------HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHH
Confidence 9999999999999999999999998631 13445789999999999986 367888999999
Q ss_pred HHHHccCCCCcchhHHHhhchHHHHHHHhcCC--CHHHHHHHHHHHHhhcCcc
Q 010080 463 ELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDKYFGED 513 (518)
Q Consensus 463 ~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~--~~~i~~~a~~il~~~f~~~ 513 (518)
.||+... ......+.++||++.|..|..+. .+.+.+.|..+|..+|...
T Consensus 428 ~NL~a~~--~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 428 NEVIAEN--LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp HHHHTTC--HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHhcCC--HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 9998542 23567888999999999998775 8899999999999988754
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2e-36 Score=320.84 Aligned_cols=369 Identities=17% Similarity=0.252 Sum_probs=320.3
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-hHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080 124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK-QEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE 200 (518)
Q Consensus 124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~-~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~ 200 (518)
.+.+|.|++.|.+++ +..+..|+++|.++++.. ......++ |++|.|+.+|.+++++.++..|+|+|++++.++++
T Consensus 86 ~~~i~~lv~~L~s~~-~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 86 QQELPQMTQQLNSDD-MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp -CCHHHHHHHHSCSS-HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 567999999998765 667789999999997653 33344455 79999999998844899999999999999998889
Q ss_pred hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHh
Q 010080 201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYL 280 (518)
Q Consensus 201 ~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L 280 (518)
.+..++..|++|+|+.++.+++..++..|+|+|.+|+... ...++.+...+++|.|+.++.+.+++++..++|+|++|
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS--TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--ccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999653 23455555689999999999999999999999999999
Q ss_pred hcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhh
Q 010080 281 SALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVL 360 (518)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i 360 (518)
+.+...........|+++.|+.+| .+++..++..++++|++++.+.+...+.+++. |+++.|+.+|.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~------~~v~~Lv~lL~~~~~~v 315 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDV------RIPKRLVELLSHESTLV 315 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT------TCHHHHHHGGGCSCHHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhc------CcHHHHHHHHCCCChhh
Confidence 986644555666789999999999 47788999999999999998877666666653 69999999999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch
Q 010080 361 KKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 440 (518)
Q Consensus 361 ~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i 440 (518)
+..|+|+|+|++.+++...+.+++.|++|.|+.+|.+++..++++|+|+|+|++.+ + .++++.+++.|++
T Consensus 316 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~------~----~~~~~~~~~~~~l 385 (530)
T 1wa5_B 316 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG------N----TEQIQAVIDANLI 385 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS------C----HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC------C----HHHHHHHHHCCCH
Confidence 99999999999999989999999999999999999999999999999999999863 2 3677888999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHccCCC-CcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080 441 SGFIDLVRSADIEAARLGLQFMELVLRGMPN-HEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 512 (518)
Q Consensus 441 ~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~-~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~ 512 (518)
+.|+.+|..++++++..++++|.++...+.. ......+.+.|+++.|..+..+++++++..|...|.+++..
T Consensus 386 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999986432 02345566889999999999999999999999999888753
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.8e-35 Score=326.02 Aligned_cols=403 Identities=17% Similarity=0.214 Sum_probs=323.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080 84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA 163 (518)
Q Consensus 84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~ 163 (518)
++.++..++++++..+..|+..|.++.+... .....+.+.|++|.|+.+|.+++ ...+..|+.+|.+++.++++.+..
T Consensus 236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHH
Confidence 3445556678899999999999999665533 33455668999999999998754 455556889999999888888877
Q ss_pred hc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080 164 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 164 v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 241 (518)
++ ++++.|+.+|.+.+....++.++.+|.+++. ++..+..++..|+++.|+.++.+.+..+++.++|+|.+|+....
T Consensus 314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~ 392 (780)
T 2z6g_A 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 392 (780)
T ss_dssp HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence 76 6999999999986667788899999999997 67889999999999999999999999999999999999998753
Q ss_pred CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCc-cchhhhhhhh
Q 010080 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL-QLLIPVLRSL 320 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~-~v~~~al~~L 320 (518)
+. . ...+++|.|+++|.+.+++++..++|+|++|+.++++..+.+++.|+++.|+.+|..+.+. .++.+|+++|
T Consensus 393 ~~---~--~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 393 KQ---E--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TC---S--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hh---h--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 21 1 1358999999999999999999999999999998888889999999999999999643443 8999999999
Q ss_pred hhhhcCCCcc---cceeeccCCCchhhhHHHHHHHhccChh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc
Q 010080 321 GNLVAGDSST---ISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 396 (518)
Q Consensus 321 ~nl~~~~~~~---~~~~i~~G~~~~~~~l~~L~~lL~~~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~ 396 (518)
+||+..+... ...++. .++++.|+.+|.+++. .++++|+|+|+||+.+. .....+++.|++|.|+++|.
T Consensus 468 ~nL~~~~~~~~~~~~~v~~------~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~ 540 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLV 540 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHH------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHH------cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHH
Confidence 9998755431 123443 4689999999998775 99999999999999865 44578889999999999998
Q ss_pred CCChhHHHHHHHHHHH--hcCCCCCCCCCchhH--------------HHHHHHHHhcCchHHHHHhhccCCHHHHHHHHH
Q 010080 397 TSPFDIKKEVAYVLGN--LCVSPTEGEGKPKLI--------------QEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ 460 (518)
Q Consensus 397 ~~~~~v~~eA~~aL~n--l~~~~~~~~~~~~~~--------------~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~ 460 (518)
+++++++++|+|+++| ++.+ ++++++ .+....+.+.|++++|+.+|.++++.++..++.
T Consensus 541 ~~~~~~~~~aa~al~nq~~~~~-----~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~ 615 (780)
T 2z6g_A 541 RAHQDTQRRTSMGGTQQQFVEG-----VRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 615 (780)
T ss_dssp HHHHHHHHTTC------CCSTT-----CCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHH
T ss_pred hcchhHHHHHhhccccchhhcc-----cChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 8777777777776666 3221 121111 122345778999999999999999999999999
Q ss_pred HHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080 461 FMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 509 (518)
Q Consensus 461 ~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~ 509 (518)
+|.++.. +...+..+.++||++.|..|++++|+++++.|...|.++
T Consensus 616 aL~~L~~---~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l 661 (780)
T 2z6g_A 616 VLCELAQ---DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661 (780)
T ss_dssp HHHHHHT---SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhc---CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999973 234678899999999999999999999966554444433
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.5e-35 Score=307.09 Aligned_cols=370 Identities=19% Similarity=0.257 Sum_probs=310.4
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH
Q 010080 81 VEELKSAVAYHGKG-AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 159 (518)
Q Consensus 81 ~~~l~~~l~~~~s~-~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~ 159 (518)
++.+.+++ +++ ++..+..|+..|.++.+... .....+++.|++|.|+++|++++ +.++..|+|+|.+++.+.+.
T Consensus 66 i~~L~~~L---~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~ 140 (450)
T 2jdq_A 66 VARFVEFL---KRKENCTLQFESAWVLTNIASGNS-LQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTM 140 (450)
T ss_dssp HHHHHHHH---TCTTCHHHHHHHHHHHHHHHSSCH-HHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHH---CCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHH
Confidence 34445444 466 89999999999999766432 34456778999999999998754 66777899999999998888
Q ss_pred HHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC-hhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHh
Q 010080 160 ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL 236 (518)
Q Consensus 160 ~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL 236 (518)
.+..++ |++|.|+.+|.+.++..++..|+|+|+|++.+. +..+..+ ..+++|.|+.++.+++..++..++|+|.+|
T Consensus 141 ~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 888776 799999999986568999999999999999755 3333222 378999999999999999999999999999
Q ss_pred hcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhh
Q 010080 237 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 316 (518)
Q Consensus 237 ~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~a 316 (518)
+.+.. .....+...+++|.|+.++.+++++++..++|+|++++.+.+...+.+++.|+++.|+.+|. ++++.++..|
T Consensus 220 ~~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~vr~~a 296 (450)
T 2jdq_A 220 SDGPN--DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS-SPKESIKKEA 296 (450)
T ss_dssp TSSSH--HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT-CSSHHHHHHH
T ss_pred HCCCc--HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc-CCCHHHHHHH
Confidence 97632 23334456799999999999999999999999999999988777888889999999999994 7788999999
Q ss_pred hhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHh
Q 010080 317 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLL 395 (518)
Q Consensus 317 l~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL 395 (518)
+++|+|++.+++...+.+++. +++|.|+.+|.++++.+++.|+|+|+|++.+ ++++++.+++.|++|.|+++|
T Consensus 297 ~~~L~~l~~~~~~~~~~~~~~------~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll 370 (450)
T 2jdq_A 297 CWTISNITAGNRAQIQTVIDA------NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL 370 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHHT------THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGG
T ss_pred HHHHHHHHcCCHHHHHHHHHC------CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHh
Confidence 999999999887777777754 6999999999999999999999999999975 778899999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhcCCCCCC----CCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080 396 STSPFDIKKEVAYVLGNLCVSPTEG----EGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 396 ~~~~~~v~~eA~~aL~nl~~~~~~~----~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~ 468 (518)
.+.+++++..|+|+|.|++...... .+. +..++..+.+.|+++.|..++.+++.++...++.+|.+++..
T Consensus 371 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~---~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 371 TVMDSKIVQVALNGLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp GSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---CCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHHHHhchhhhhccccc---hhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 9999999999999999998642100 000 013456788889999999999999999999999999999853
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=296.87 Aligned_cols=326 Identities=18% Similarity=0.149 Sum_probs=268.6
Q ss_pred HHHHHHHHHhcCC---------CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCH----------HHHHHHhcCCC--C
Q 010080 81 VEELKSAVAYHGK---------GAMQKRVNALRELRRLLSRFEFPPIETALKAGAI----------PVLVQCLAFGS--P 139 (518)
Q Consensus 81 ~~~l~~~l~~~~s---------~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~i----------p~Lv~~L~~~~--~ 139 (518)
++-|+++++.-.. ++++.+++|..+|.++.+..+ .......+.|++ +.+++++.+.+ .
T Consensus 72 ~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (458)
T 3nmz_A 72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQP-DDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM 150 (458)
T ss_dssp HHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS
T ss_pred HHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCc-chhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence 4556666652212 558999999999999888765 445667778888 77888887542 1
Q ss_pred h-----------HHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcC----------CCCHHHHHHHHHHHHhhhC
Q 010080 140 D-----------EQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGE----------KSSSPVAEQCAWALGNVAG 196 (518)
Q Consensus 140 ~-----------~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~----------~~~~~v~~~a~~~L~nla~ 196 (518)
+ ..+..|+|+|.|++.+ ++.++.++ |+++.|+.+|.. +.++.+++.|+|+|.||+.
T Consensus 151 ~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~ 229 (458)
T 3nmz_A 151 DQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229 (458)
T ss_dssp CCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence 1 1234799999999765 78888888 899999999942 1347799999999999999
Q ss_pred CChhhHHHHHh-cCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCChhHHHHHH
Q 010080 197 EGEEFRNVLLS-QGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVA 274 (518)
Q Consensus 197 d~~~~r~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~d~~v~~~a~ 274 (518)
+++..+..+.. .|+||+|+.+|.+++.+++..++|+|+||+.+.+ ...+..+...|++|.|+++| .+.+++++..++
T Consensus 230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC-HHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC-HHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 88778877765 5669999999999999999999999999997532 23456666789999999975 567889999999
Q ss_pred HHHHHhhcCCchhhhHHH-hcCchHHHHHHHccCCCc----cchhhhhhhhhhhhc---CCCcccceeeccCCCchhhhH
Q 010080 275 WVVVYLSALSNVATSLLV-KSGVLQLLVERLATSNSL----QLLIPVLRSLGNLVA---GDSSTISDVLVPGHGITDQVI 346 (518)
Q Consensus 275 ~~L~~L~~~~~~~~~~~~-~~g~~~~Lv~lL~~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~i~~G~~~~~~~l 346 (518)
++|.+|+.+.++....+. ..|+++.|+.+|. +.+. +++..|+++|.|++. +++++.+.++++ |++
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~------G~i 381 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN------NCL 381 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT-CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT------THH
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc------ccH
Confidence 999999984444555555 7999999999995 4433 378899999999996 677778888765 599
Q ss_pred HHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 347 AVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 347 ~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
|.|+.+|.+++..++++|+|+|+|++.+++++++.+++.|++|+|+++|.+++.++++.|+|+|.|++.+
T Consensus 382 ~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 382 QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999975
No 22
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=1.8e-34 Score=286.99 Aligned_cols=273 Identities=22% Similarity=0.254 Sum_probs=234.4
Q ss_pred CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-----------CChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080 179 SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-----------NKGSTVRTAAWALSNLIKGPDPKPATE 247 (518)
Q Consensus 179 ~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~nL~~~~~~~~~~~ 247 (518)
+....+.+|+|+|+||++| +++|+.+.+.|++++|+.+|.. .++.++++|+|+|.|||.+++ ..+.
T Consensus 44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~--~~k~ 120 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--ANKA 120 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCH--HHHH
T ss_pred cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCH--HHHH
Confidence 3456677999999999996 7999999999999999999952 247899999999999998742 2344
Q ss_pred HH-HhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC-CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080 248 LI-KVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 248 ~i-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 325 (518)
.+ ...|++|.|+++|.+++++++..++|+|.||+.+ +++....+.+.|+++.|+++|..+.+..++.+++++|+|++.
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 44 3456799999999999999999999999999985 456788889999999999986556778899999999999998
Q ss_pred CCCcccceee-ccCCCchhhhHHHHHHHhccChh----hhHHHHHHHHHHhcc---CCHHHHHHHHhCCCHHHHHHHhcC
Q 010080 326 GDSSTISDVL-VPGHGITDQVIAVLVKCLKSEHR----VLKKEAAWVLSNIAA---GSVEHKQLIHSSEALALLLHLLST 397 (518)
Q Consensus 326 ~~~~~~~~~i-~~G~~~~~~~l~~L~~lL~~~~~----~i~~~a~~~Lsnl~~---~~~~~~~~li~~~~i~~Li~lL~~ 397 (518)
+.+.....+. . .|++|.|+.+|.+.+. .+++.|+|+|+||+. +++++++.++++|++|.|+++|.+
T Consensus 201 ~~~~nk~~i~~~------~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~ 274 (354)
T 3nmw_A 201 HCTENKADICAV------DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274 (354)
T ss_dssp TCHHHHHHHHHS------TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred cChhhhHHHHHh------cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 5543333333 3 3699999999987654 489999999999997 788999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080 398 SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 470 (518)
Q Consensus 398 ~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~ 470 (518)
++..++++|+|+|+|++.. + .++.+.+++.|++++|+++|.+++++++..+..+|.+|+...+
T Consensus 275 ~~~~v~~~A~~aL~nLa~~------~----~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 275 HSLTIVSNACGTLWNLSAR------N----PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp SCHHHHHHHHHHHHHHTSS------C----HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHHHHHhCC------C----HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999863 2 4778899999999999999999999999999999999997643
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.1e-33 Score=297.09 Aligned_cols=398 Identities=18% Similarity=0.228 Sum_probs=324.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080 81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 160 (518)
Q Consensus 81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~ 160 (518)
++.+.+++. .++|++.+..|+..|++ ++.... ....+++.|++|.|+++|++++ +..+..|+|+|.|++.++++.
T Consensus 61 i~~Lv~~L~--~~~~~~~~~~a~~~L~~-ls~~~~-~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 61 VSAIVRTMQ--NTNDVETARCTAGTLHN-LSHHRE-GLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHH--HCCCHHHHHHHHHHHHH-HTTSHH-HHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHH-HHcCch-hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 344555553 24589999999999999 455433 5677889999999999998765 678888999999999887667
Q ss_pred HHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhh
Q 010080 161 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLI 237 (518)
Q Consensus 161 ~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~ 237 (518)
+..+. |++|.|+.+|.+ ++.+++..++.+|+|++.++++.+..+.+.|+++.|+.++.+. .......++.+|.||+
T Consensus 136 ~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 214 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 77775 799999999998 7899999999999999998899999999999999999999865 4567778899999999
Q ss_pred cCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhh
Q 010080 238 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVL 317 (518)
Q Consensus 238 ~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al 317 (518)
..+ . .+..+...|++|.|+.++.+++++++..++|+|.+|+.+.+... ...|+++.|+.+| .+.+++++..++
T Consensus 215 ~~~--~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll-~~~~~~v~~~a~ 287 (529)
T 1jdh_A 215 VCS--S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLL-GSDDINVVTCAA 287 (529)
T ss_dssp TST--T-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHT-TCSCHHHHHHHH
T ss_pred cCc--c-cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHH-cCCCHHHHHHHH
Confidence 653 3 34455568999999999999999999999999999998643221 2347899999999 578899999999
Q ss_pred hhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC--hhhhHHHHHHHHHHhccCCHH---HHHHHHhCCCHHHHH
Q 010080 318 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE--HRVLKKEAAWVLSNIAAGSVE---HKQLIHSSEALALLL 392 (518)
Q Consensus 318 ~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~--~~~i~~~a~~~Lsnl~~~~~~---~~~~li~~~~i~~Li 392 (518)
++|+|++.+++.....+.+. |+++.|+.+|.+. ++.++..|+++|+|++.++++ ....+++.|++|.|+
T Consensus 288 ~~L~~L~~~~~~~~~~~~~~------~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~ 361 (529)
T 1jdh_A 288 GILSNLTCNNYKNKMMVCQV------GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361 (529)
T ss_dssp HHHHHHTTTCHHHHHHHHHT------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHc------CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHH
Confidence 99999998876666777654 5999999999763 378999999999999886432 456788999999999
Q ss_pred HHhcCCC-hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHH--------------
Q 010080 393 HLLSTSP-FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARL-------------- 457 (518)
Q Consensus 393 ~lL~~~~-~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~-------------- 457 (518)
.+|++++ ..++++|+|+|+|++.++ +....+.+.|+++.|+.+|.+++++++..
T Consensus 362 ~lL~~~~~~~v~~~a~~~l~nl~~~~-----------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~ 430 (529)
T 1jdh_A 362 KLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430 (529)
T ss_dssp HTTSTTCCHHHHHHHHHHHHHHTTSG-----------GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTB
T ss_pred HHhccccchHHHHHHHHHHHHHhcCh-----------hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccc
Confidence 9999876 599999999999998742 12367889999999999999877666554
Q ss_pred --------HHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 010080 458 --------GLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG 511 (518)
Q Consensus 458 --------~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~ 511 (518)
++.+|.++... ...+..+.+.|+++.|..+..+++++++..|...+.++..
T Consensus 431 ~~~~i~~~~~~al~~L~~~---~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 431 RMEEIVEGCTGALHILARD---VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTS---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHhcC---chHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 44455555432 1234567889999999999999999999999988877653
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-32 Score=295.01 Aligned_cols=399 Identities=18% Similarity=0.223 Sum_probs=326.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080 81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 160 (518)
Q Consensus 81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~ 160 (518)
++.+.+.+. .+.+++.+..|+..|+. ++.... ....+++.|++|.|+++|++++ +..+..|+|+|.|++.+.+..
T Consensus 58 i~~Lv~~L~--~~~~~~~~~~A~~~L~~-Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 58 VSAIVRTMQ--NTNDVETARCTAGTLHN-LSHHRE-GLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHH--SCCCHHHHHHHHHHHHH-HTTSHH-HHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHH-HhcChh-hHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 345555554 23489999999999998 555543 5677888999999999998765 677889999999999887667
Q ss_pred HHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhh
Q 010080 161 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLI 237 (518)
Q Consensus 161 ~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~ 237 (518)
+..++ |++|.|+.+|.+ ++.+++..++.+|+|++..+++.+..+.+.|+++.|+.++.+. ...++..++.+|.||+
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs 211 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 211 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCChHHHHHHHCc-CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence 77775 799999999998 6788888888899999987899999999999999999999866 4677899999999999
Q ss_pred cCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhh
Q 010080 238 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVL 317 (518)
Q Consensus 238 ~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al 317 (518)
... . .+..+...|++|.|+.++.+++.+++..++|+|.+|+...... ....++++.|+.+| .+.+.+++..++
T Consensus 212 ~~~--~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL-~~~d~~v~~~a~ 284 (644)
T 2z6h_A 212 VCS--S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLL-GSDDINVVTCAA 284 (644)
T ss_dssp TCT--T-HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHT-TCSCHHHHHHHH
T ss_pred cCc--c-cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHH-cCCCHHHHHHHH
Confidence 653 2 3455557899999999999999999999999999999754321 12247899999999 478889999999
Q ss_pred hhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccCh--hhhHHHHHHHHHHhccCCH--HHHH-HHHhCCCHHHHH
Q 010080 318 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEH--RVLKKEAAWVLSNIAAGSV--EHKQ-LIHSSEALALLL 392 (518)
Q Consensus 318 ~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~--~~i~~~a~~~Lsnl~~~~~--~~~~-~li~~~~i~~Li 392 (518)
++|+|++.+++...+.+++. |+++.|+.+|.+.+ +.++..|+++|+||+.+.+ ++.+ .+++.|++|.|+
T Consensus 285 ~aL~~L~~~~~~~~~~v~~~------g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~ 358 (644)
T 2z6h_A 285 GILSNLTCNNYKNKMMVCQV------GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHT------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHc------CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHH
Confidence 99999998876666667654 59999999998643 6999999999999997543 3344 478899999999
Q ss_pred HHhcCCC-hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC--------------------
Q 010080 393 HLLSTSP-FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD-------------------- 451 (518)
Q Consensus 393 ~lL~~~~-~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d-------------------- 451 (518)
++|.+.+ ..++++|+|+|+|++.++ +....+++.|+++.|+.+|...+
T Consensus 359 ~lL~~~~~~~v~~~a~~~L~nLa~~~-----------~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~ 427 (644)
T 2z6h_A 359 KLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427 (644)
T ss_dssp HTTSTTCCHHHHHHHHHHHHHHTTSG-----------GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSS
T ss_pred HHhCccCchHHHHHHHHHHHHHccCH-----------HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccc
Confidence 9998875 699999999999998742 12277889999999999998743
Q ss_pred --HHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080 452 --IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 512 (518)
Q Consensus 452 --~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~ 512 (518)
.+++..++.+|.++.... ..+..+.+.|+++.|..+..+++++++..|...|.++..+
T Consensus 428 ~~~~v~~~a~~aL~~La~~~---~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 428 RMEEIVEGCTGALHILARDV---HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTSH---HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHhcCH---HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 345667788888886532 3456788899999999999999999999999888776543
No 25
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.1e-31 Score=295.90 Aligned_cols=397 Identities=18% Similarity=0.223 Sum_probs=324.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080 81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 160 (518)
Q Consensus 81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~ 160 (518)
++.|.+.+. .+.+++.+..|+..|++ ++.... ....+.+.|++|.|+++|++++ +.++.+|+|+|.|++.+.++.
T Consensus 194 i~~Lv~~L~--~~~d~~vr~~Aa~aL~~-Ls~~~~-~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 194 VSAIVRTMQ--NTNDVETARCTSGTLHN-LSHHRE-GLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHH--HCCCHHHHHHHHHHHHH-HHTSHH-HHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHH-HhCCch-hHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 334444443 23489999999999999 555432 3667888999999999998765 678889999999999887777
Q ss_pred HHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCC-hhHHHHHHHHHHHhh
Q 010080 161 TKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNK-GSTVRTAAWALSNLI 237 (518)
Q Consensus 161 ~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nL~ 237 (518)
+..+. |++|.|+.+|.+ ++..+++.++.+|.+++..+++.+..+...|+++.|+.++.+.+ ......++.+|.+|+
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 347 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 77776 799999999988 78999999999999999888999999999999999999999764 556678899999999
Q ss_pred cCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhh
Q 010080 238 KGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVL 317 (518)
Q Consensus 238 ~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al 317 (518)
... . .+..+...|++|.|+.++.+.+++++..++|+|.+|+...... ....++++.|+.+| .+.+..++..|+
T Consensus 348 ~~~--~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL-~~~d~~vr~~A~ 420 (780)
T 2z6g_A 348 VCS--S-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLL-GSDDINVVTCAA 420 (780)
T ss_dssp TST--T-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHT-TCSCHHHHHHHH
T ss_pred cCh--H-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHH-cCCCHHHHHHHH
Confidence 653 2 3445556899999999999999999999999999999755321 12357899999998 578899999999
Q ss_pred hhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-h-hhhHHHHHHHHHHhccCCHH---HHHHHHhCCCHHHHH
Q 010080 318 RSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-H-RVLKKEAAWVLSNIAAGSVE---HKQLIHSSEALALLL 392 (518)
Q Consensus 318 ~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~-~~i~~~a~~~Lsnl~~~~~~---~~~~li~~~~i~~Li 392 (518)
++|++++.+++...+.+++. |+++.|+.+|.+. + ..++..|+|+|+||+.+.++ ....+++.|++|.|+
T Consensus 421 ~aL~~L~~~~~~~~~~i~~~------g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~ 494 (780)
T 2z6g_A 421 GILSNLTCNNYKNKMMVCQV------GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494 (780)
T ss_dssp HHHHHHTSSCHHHHHHHHTT------THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHC------CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHH
Confidence 99999998877777777754 5999999999763 3 38999999999999875433 234678899999999
Q ss_pred HHhcCCCh-hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC--------------------
Q 010080 393 HLLSTSPF-DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD-------------------- 451 (518)
Q Consensus 393 ~lL~~~~~-~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d-------------------- 451 (518)
.+|.+.+. .++++|+|+|+|++.++ +....+.+.|+++.|+.+|.+.+
T Consensus 495 ~lL~~~~~~~v~~~A~~aL~nLa~~~-----------~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~ 563 (780)
T 2z6g_A 495 KLLHPPSHWPLIKATVGLIRNLALCP-----------ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 563 (780)
T ss_dssp HTTSTTCCHHHHHHHHHHHHHHHSSH-----------HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTC
T ss_pred HHhcCCChHHHHHHHHHHHHHHhcCH-----------HHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhccc
Confidence 99988775 99999999999998742 33377889999999999998654
Q ss_pred --HHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080 452 --IEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510 (518)
Q Consensus 452 --~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f 510 (518)
.+++..++.+|.++... ...+..+.+.|+++.|..|..+++++++..|...|.++.
T Consensus 564 ~~~~v~~~a~~aL~~La~~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 564 RMEEIVEACTGALHILARD---IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTS---HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcC---hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34556677888877532 234566888999999999999999999999988877654
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=1.8e-32 Score=272.74 Aligned_cols=266 Identities=19% Similarity=0.171 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcC----------CCCHHHHHHHHHHHHhhhCCChhhHHHHHh-c
Q 010080 142 QLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGE----------KSSSPVAEQCAWALGNVAGEGEEFRNVLLS-Q 208 (518)
Q Consensus 142 ~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~----------~~~~~v~~~a~~~L~nla~d~~~~r~~~~~-~ 208 (518)
.+..|+|+|.|++.+ ++.++.++ |++|.|+.+|.. +.++.+++.|+|+|.||+.+++..+..+.. .
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 345799999999976 68888887 899999999952 124789999999999999988778888765 4
Q ss_pred CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCChhHHHHHHHHHHHhhcCCchh
Q 010080 209 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVYLSALSNVA 287 (518)
Q Consensus 209 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~ 287 (518)
|+||+|+.+|.+++..+++.++|+|+||+.+.+ ...+..+...|++|.|+++| .+.+++++..++++|.+|+.+.++.
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRAD-VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC-HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC-HHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 569999999999999999999999999997532 23455666789999999975 5678899999999999999855555
Q ss_pred hhHHH-hcCchHHHHHHHccCCCc----cchhhhhhhhhhhhc---CCCcccceeeccCCCchhhhHHHHHHHhccChhh
Q 010080 288 TSLLV-KSGVLQLLVERLATSNSL----QLLIPVLRSLGNLVA---GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 359 (518)
Q Consensus 288 ~~~~~-~~g~~~~Lv~lL~~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~ 359 (518)
...+. ..|+++.|+.+|. +.+. +++..++++|.|++. ++++..+.++++ |++|.|+.+|.+++..
T Consensus 206 k~~i~~~~Gai~~Lv~lL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~------g~i~~Lv~lL~~~~~~ 278 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN------NCLQTLLQHLKSHSLT 278 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTT-CCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT------THHHHHHHHTTCSCHH
T ss_pred hHHHHHhcCcHHHHHHHhc-cCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc------CCHHHHHHHHcCCChH
Confidence 55555 7899999999995 4433 478899999999986 677777888865 5999999999999999
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 360 i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
++++|+|+|+||+.+++++++.+++.|++|+|+++|.+++.+++++|+|+|.|++.+
T Consensus 279 v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 279 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999988999999999999999999999999999999999999999985
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=1.1e-28 Score=234.62 Aligned_cols=242 Identities=24% Similarity=0.355 Sum_probs=221.8
Q ss_pred CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
+.+|.|+.+|.+ ++++++..|+|+|++++.++++.+..+.+.|+++.|+.++.+++..++..++|+|.+|+... ...
T Consensus 2 ~~i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~ 78 (252)
T 4hxt_A 2 NDVEKLVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEA 78 (252)
T ss_dssp CHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHH
T ss_pred CcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--hHH
Confidence 568999999988 67999999999999999988889999999999999999999999999999999999999753 234
Q ss_pred hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080 246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 325 (518)
...+...+++|.|+.++.+++++++..++|+|.+|+...++....+.+.|+++.|+.+| .++++.++..++++|+|++.
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence 55566789999999999999999999999999999987888889999999999999999 47888999999999999998
Q ss_pred CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080 326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 405 (518)
Q Consensus 326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e 405 (518)
+++...+.+++. |+++.|+.++.++++.++..|+|+|+|++.++++..+.+.+.|+++.|+++++++++++++.
T Consensus 158 ~~~~~~~~~~~~------~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 231 (252)
T 4hxt_A 158 GPDEAIKAIVDA------GGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKE 231 (252)
T ss_dssp SCHHHHHHHHHT------THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHH
T ss_pred CCHHHHHHHHHC------cCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHH
Confidence 877766677754 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 010080 406 VAYVLGNLCVSP 417 (518)
Q Consensus 406 A~~aL~nl~~~~ 417 (518)
|+|+|+|++...
T Consensus 232 a~~~L~~l~~~~ 243 (252)
T 4hxt_A 232 AQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998754
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=7e-28 Score=229.19 Aligned_cols=240 Identities=27% Similarity=0.382 Sum_probs=216.5
Q ss_pred CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080 125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 202 (518)
Q Consensus 125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 202 (518)
|.+|.|+++|++++ +..+..|+|+|.+++.+.++....++ |++|.|+.+|.+ ++.++++.|+|+|+|++.++++.+
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHH
Confidence 67999999999876 77788999999999999887887777 799999999988 689999999999999999889999
Q ss_pred HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
..+.+.|+++.|+.++.+++..++..++|+|.+|+... ......+...|++|.|++++.+++++++..++|+|++|+.
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999643 2334455568999999999999999999999999999999
Q ss_pred CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080 283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 362 (518)
Q Consensus 283 ~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~ 362 (518)
+++...+.+.+.|+++.|+.+|. ++++.++..++++|+|++.+++...+.+++. |+++.|+.++.++++.+++
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~------~~i~~L~~ll~~~~~~v~~ 230 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDA------GGVEVLQKLLTSTDSEVQK 230 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHT------THHHHHHHGGGCSCHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC------CCHHHHHHHHCCCcHHHHH
Confidence 87778889999999999999994 7888999999999999998877777777754 6999999999999999999
Q ss_pred HHHHHHHHhccCC
Q 010080 363 EAAWVLSNIAAGS 375 (518)
Q Consensus 363 ~a~~~Lsnl~~~~ 375 (518)
.|+|+|+|++...
T Consensus 231 ~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 231 EAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998754
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=2.3e-28 Score=233.00 Aligned_cols=239 Identities=27% Similarity=0.422 Sum_probs=215.5
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
..+.++..|.+ ++++++..|+|+|.++...+++.+..+.+.|++|.|+.++.+++..++..++|+|.+++.+. ....
T Consensus 13 ~~~~~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~ 89 (252)
T 4db8_A 13 ELPQMTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQI 89 (252)
T ss_dssp SHHHHHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHH
T ss_pred hHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--HHHH
Confidence 58899999988 78999999999998877657788899999999999999999999999999999999999753 2344
Q ss_pred hHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC
Q 010080 247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 326 (518)
Q Consensus 247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 326 (518)
..+...|++|.|+.+|.+++++++..++|+|.+|+.+.+.....+.+.|+++.|+.+| .+++..++..++++|+|++.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 5556789999999999999999999999999999987666658889999999999999 477889999999999999988
Q ss_pred CCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHH
Q 010080 327 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 406 (518)
Q Consensus 327 ~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA 406 (518)
++.....+++. |+++.|+.+|.++++.++..|+|+|+|++.++++..+.+++.|+++.|++++.+++++++++|
T Consensus 169 ~~~~~~~~~~~------~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A 242 (252)
T 4db8_A 169 GNEQIQAVIDA------GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242 (252)
T ss_dssp CHHHHHHHHHT------TCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred ChHHHHHHHHC------CCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence 87777766654 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 010080 407 AYVLGNLCV 415 (518)
Q Consensus 407 ~~aL~nl~~ 415 (518)
+|+|+|++.
T Consensus 243 ~~~L~~l~~ 251 (252)
T 4db8_A 243 QEALEKLQS 251 (252)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999999974
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.96 E-value=5.3e-28 Score=234.26 Aligned_cols=226 Identities=15% Similarity=0.175 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHH-HHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhh
Q 010080 267 EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE-RLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQV 345 (518)
Q Consensus 267 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~-lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~ 345 (518)
.+-+..|+..|.+++.+ .++...+.+.|+++.|+. +| .++++.++..|+++|||++.+++...+.+++. |+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL-~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~------g~ 125 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYL-EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL------GA 125 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT------TH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC------CC
Confidence 35678899999999984 456677788999999999 88 58899999999999999999988888888865 59
Q ss_pred HHHHHHHhcc-ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCc
Q 010080 346 IAVLVKCLKS-EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKP 424 (518)
Q Consensus 346 l~~L~~lL~~-~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~ 424 (518)
+|.|+.+|.+ ++..+++.|+|+|+||+.+++...+.+++.|++|.|+.+|++++++++++|+|+|+|++.+.
T Consensus 126 l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~------- 198 (296)
T 1xqr_A 126 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH------- 198 (296)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-------
Confidence 9999999986 47899999999999999999999999999999999999999999999999999999998742
Q ss_pred hhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCC---------cchhHHHhhchHHHHHHHhcCC-
Q 010080 425 KLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNH---------EGTKLVEREDGIDAMERFQFHE- 494 (518)
Q Consensus 425 ~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~---------~~~~~ie~~ggl~~l~~L~~~~- 494 (518)
.++++.+++.|++++|+.+|.++|++++..++.+|.+|+...+.. ....++++ .++.||.++
T Consensus 199 ---~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~-----~~~~lq~~e~ 270 (296)
T 1xqr_A 199 ---PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH-----RCQLLQQHEE 270 (296)
T ss_dssp ---GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH-----HHHHHTTCGG
T ss_pred ---hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH-----HHHHccchHH
Confidence 256789999999999999999999999999999999999763210 01122222 477788776
Q ss_pred CHHHHHHHHHHHHhhcCccCC
Q 010080 495 NEDLRNMANGLVDKYFGEDYG 515 (518)
Q Consensus 495 ~~~i~~~a~~il~~~f~~~~~ 515 (518)
+.++|++|..|+++||+++++
T Consensus 271 ~~e~~~~~~~il~~~f~~~~~ 291 (296)
T 1xqr_A 271 YQEELEFCEKLLQTCFSSPAD 291 (296)
T ss_dssp GHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 899999999999999976543
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1.1e-27 Score=228.22 Aligned_cols=238 Identities=25% Similarity=0.412 Sum_probs=211.5
Q ss_pred CCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080 125 GAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 202 (518)
Q Consensus 125 g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 202 (518)
...|.++..|++++ +..+..|+|+|.++.+..++....++ |++|.|+.+|.+ ++++++..|+|+|+|++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHH
Confidence 45888999999876 45778999999988876666677776 799999999998 679999999999999999899999
Q ss_pred HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
..+.+.|++|.|+.++.+++..++..++|+|.||+.+. ......+...|++|.|+++|.+++++++..++|+|.+|+.
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC--chHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999763 2222455678999999999999999999999999999999
Q ss_pred CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080 283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 362 (518)
Q Consensus 283 ~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~ 362 (518)
++++..+.+++.|+++.|+.+|. ++++.++..++++|+|++.+++.....+++. |+++.|+.++.+.++.+++
T Consensus 168 ~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------g~i~~L~~ll~~~~~~v~~ 240 (252)
T 4db8_A 168 GGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEA------GALEKLEQLQSHENEKIQK 240 (252)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGG-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHTTTTCSSSHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC------CcHHHHHHHhCCCCHHHHH
Confidence 88888888999999999999994 7788999999999999998887777777754 6999999999999999999
Q ss_pred HHHHHHHHhcc
Q 010080 363 EAAWVLSNIAA 373 (518)
Q Consensus 363 ~a~~~Lsnl~~ 373 (518)
.|+|+|+||+.
T Consensus 241 ~A~~~L~~l~~ 251 (252)
T 4db8_A 241 EAQEALEKLQS 251 (252)
T ss_dssp THHHHHHTTC-
T ss_pred HHHHHHHHHhc
Confidence 99999999975
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.2e-25 Score=233.20 Aligned_cols=322 Identities=12% Similarity=0.123 Sum_probs=249.6
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCCCCcHH-HHH-HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH-------
Q 010080 89 AYHGKGAMQKRVNALRELRRLLSRFEFPPIE-TAL-KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE------- 159 (518)
Q Consensus 89 ~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~-~~i-~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~------- 159 (518)
+.+.+++.+.+..|+..|.. ++..+ .+. .+. +.|.++.|+.+++........+.++.+|.|++...+.
T Consensus 341 ~~L~~~~~~~~~~AvEgLaY-LSl~~--~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~ 417 (778)
T 3opb_A 341 NAISRRIVPKVEMSVEALAY-LSLKA--SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXX 417 (778)
T ss_dssp HHTTTCCHHHHHHHHHHHHH-HTTSS--HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-
T ss_pred HHHhcCCccHHHHHHHHHHH-HhCCH--HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhh
Confidence 34456677778999999999 66643 333 333 4778999999998533345779999999999963321
Q ss_pred -------------------------------HHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH
Q 010080 160 -------------------------------ETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL 206 (518)
Q Consensus 160 -------------------------------~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~ 206 (518)
.+..++ |++|.|+.++.+ +++.++++|+|+|+||+.+ +++|..++
T Consensus 418 l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S-~s~~~re~A~~aL~nLS~d-~~~R~~lv 495 (778)
T 3opb_A 418 XXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN-LSPNCKQQVVRIIYNITRS-KNFIPQLA 495 (778)
T ss_dssp -----------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG-SCHHHHHHHHHHHHHHHTS-GGGHHHHH
T ss_pred hhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 233444 799999999988 7899999999999999985 89999999
Q ss_pred hcCChhHHHhhhCCCChh---HHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-CChh------------H-
Q 010080 207 SQGALPPLARMMLPNKGS---TVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-ADEE------------L- 269 (518)
Q Consensus 207 ~~g~i~~L~~ll~~~~~~---~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~-~d~~------------v- 269 (518)
++|++++|+.++.+.... .+.+|+++|.+|+...+|...+..-...+++|.|+.+|.. ++.. +
T Consensus 496 qqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~ 575 (778)
T 3opb_A 496 QQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTD 575 (778)
T ss_dssp HTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHH
T ss_pred HCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHH
Confidence 999999999999876433 8899999999999765433211000113899999999983 2211 2
Q ss_pred HHHHHHHHHHhhcCCc----hhhhHHHhc-CchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhh
Q 010080 270 TTEVAWVVVYLSALSN----VATSLLVKS-GVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQ 344 (518)
Q Consensus 270 ~~~a~~~L~~L~~~~~----~~~~~~~~~-g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~ 344 (518)
..+|+.||.||+..++ +..+.++.. |+++.|.++|. +++..++..|+.+++|++...+...+.+.+.+.....+
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~-s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML-DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence 6699999999998753 335667774 99999999985 67888999999999999986643223444332111123
Q ss_pred hHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhC-CCHHHHHHHhcC--CChhHHHHHHHHHHHhcCC
Q 010080 345 VIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLST--SPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 345 ~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~-~~i~~Li~lL~~--~~~~v~~eA~~aL~nl~~~ 416 (518)
-++.|+.++..++..+|+.|+|+|+|++.+.+..++.+++. ++++.++.++++ .+.+++..++.++.|++..
T Consensus 655 rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 655 NFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999998888888999987 799999999988 8999999999999999853
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=5.3e-24 Score=196.93 Aligned_cols=199 Identities=24% Similarity=0.334 Sum_probs=181.7
Q ss_pred hhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcc
Q 010080 251 VDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSST 330 (518)
Q Consensus 251 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~ 330 (518)
..+..|.|..+|.++|++++..++|+|.+++.++++..+.+++.|+++.|+.+| .++++.++..|+++|+|++.+++..
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 358899999999999999999999999999988888889999999999999999 4778899999999999999888777
Q ss_pred cceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHH
Q 010080 331 ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVL 410 (518)
Q Consensus 331 ~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL 410 (518)
.+.+++. |+++.|+.+|.++++.++..|+|+|+|++.++++..+.+++.|++|.|+++|.+++..++..|+|+|
T Consensus 89 ~~~i~~~------g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL 162 (210)
T 4db6_A 89 IQAVIDA------GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (210)
T ss_dssp HHHHHHT------TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHC------CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7777754 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHH
Q 010080 411 GNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL 466 (518)
Q Consensus 411 ~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il 466 (518)
.|++... .+....+.+.|+++.|+.++.+++++++..++.+|.++.
T Consensus 163 ~~l~~~~----------~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 163 SNIASGG----------NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTSC----------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCC----------cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 9999742 356678889999999999999999999999999999885
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=5.1e-24 Score=197.07 Aligned_cols=200 Identities=27% Similarity=0.392 Sum_probs=179.9
Q ss_pred hcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCch
Q 010080 207 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNV 286 (518)
Q Consensus 207 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~ 286 (518)
..|..++|..++++++..++..++|+|.+++.+. ......+...|++|.|+++|.+++++++..++|+|.+|+.++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 4578899999999999999999999999999653 23344556789999999999999999999999999999987888
Q ss_pred hhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHH
Q 010080 287 ATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAW 366 (518)
Q Consensus 287 ~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~ 366 (518)
..+.+++.|+++.|+.+| .++++.++..|+++|+|++.+++...+.+++. |+++.|+.++.++++.++..|+|
T Consensus 88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~ll~~~~~~v~~~a~~ 160 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDA------GALPALVQLLSSPNEQILQEALW 160 (210)
T ss_dssp HHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc------CcHHHHHHHHcCCCHHHHHHHHH
Confidence 889999999999999999 57788999999999999998887777777754 69999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 367 VLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 367 ~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
+|+|++.++++..+.+.+.|+++.|++++.+++.++++.|+|+|.+++.
T Consensus 161 aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999988999999999999999999999999999999999999975
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.91 E-value=1.9e-23 Score=202.23 Aligned_cols=181 Identities=17% Similarity=0.191 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhc--CChHHHHH-hhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh
Q 010080 142 QLLEAAWCLTNIAAGKQEETKALL--PALPLLIA-HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM 218 (518)
Q Consensus 142 ~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~-lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll 218 (518)
.+..|+..|.+++...+ ....+. |++|.|+. +|.+ +++.++++|+|+|+|++.+++.+++.+++.|++|+|+.+|
T Consensus 56 ~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 56 EREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 44569999999997544 444443 89999999 9987 7899999999999999999999999999999999999999
Q ss_pred CC-CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCch
Q 010080 219 LP-NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVL 297 (518)
Q Consensus 219 ~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~ 297 (518)
.+ ++..+++.|+|+|+|||++.. +..+.+...+++|.|+.+|.+++..++..++|+|+||+.++++.++.+++.|++
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~--~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQE--AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCc--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence 95 488999999999999998742 333444567999999999999999999999999999999888899999999999
Q ss_pred HHHHHHHccCCCccchhhhhhhhhhhhcCC
Q 010080 298 QLLVERLATSNSLQLLIPVLRSLGNLVAGD 327 (518)
Q Consensus 298 ~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~ 327 (518)
+.|+.+| .+++..++.+++++|+||+.+.
T Consensus 212 ~~Lv~LL-~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 212 QQLVALV-RTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHH-TSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-cCCChhHHHHHHHHHHHHHhCC
Confidence 9999999 5789999999999999999884
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.8e-22 Score=213.85 Aligned_cols=392 Identities=16% Similarity=0.176 Sum_probs=290.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHh
Q 010080 95 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAH 174 (518)
Q Consensus 95 ~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~l 174 (518)
+......++..|.. .+.++ +....|..+.+|.|.+.++. +..+..|+-+|..+.+........+....+.+..+
T Consensus 269 ~~~~~~a~L~lLsa-ACi~~--~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~ 342 (778)
T 3opb_A 269 DLQFTKELLRLLSS-ACIDE--TMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINA 342 (778)
T ss_dssp CHHHHHHHHHHHHH-HCCSH--HHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH-HhCCc--HHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence 33333444444433 55543 23566678899999999975 34555688888887754332222223477889999
Q ss_pred hcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhc-CChhHHHhhhCC-CChhHHHHHHHHHHHhhcCCCCC---------
Q 010080 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-GALPPLARMMLP-NKGSTVRTAAWALSNLIKGPDPK--------- 243 (518)
Q Consensus 175 L~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g~i~~L~~ll~~-~~~~~~~~a~~~L~nL~~~~~~~--------- 243 (518)
|.+ ++.+-+..|++.|+.++.+ ++.|..+... |.++.|+.++.. .+..+...++.+|.||+......
T Consensus 343 L~~-~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~ 420 (778)
T 3opb_A 343 ISR-RIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXX 420 (778)
T ss_dssp TTT-CCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC----
T ss_pred Hhc-CCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhh
Confidence 987 5666699999999999984 5677766654 669999999995 68899999999999999854310
Q ss_pred ---------c------------------hhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCc
Q 010080 244 ---------P------------------ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGV 296 (518)
Q Consensus 244 ---------~------------------~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~ 296 (518)
| ....+...|++|.|+.++.++++.++..++|+|.+|+. +++.+..+++.|+
T Consensus 421 Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGa 499 (778)
T 3opb_A 421 XXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGA 499 (778)
T ss_dssp --------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTH
T ss_pred hhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCC
Confidence 0 13455678999999999999999999999999999996 5778899999999
Q ss_pred hHHHHHHHccCCCcc--chhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc-Chhh------------h-
Q 010080 297 LQLLVERLATSNSLQ--LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-EHRV------------L- 360 (518)
Q Consensus 297 ~~~Lv~lL~~~~~~~--v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-~~~~------------i- 360 (518)
++.|+.+|....... .+..|+++|.+++...+... ++. |.. ..+++++|+.+|.. +... +
T Consensus 500 l~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~-~~~-~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~ 575 (778)
T 3opb_A 500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFK-KYS-ALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTD 575 (778)
T ss_dssp HHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSS-SSC-STTHHHHHHHTSCCSSSCSSCC---CCCCCHHH
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcC-CCc-cccchHHHHHHcCCCCCcccccccccccccHHH
Confidence 999999995332222 68899999999995543222 110 100 12699999999983 2111 2
Q ss_pred HHHHHHHHHHhccCC----HHHHHHHHhC-CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHH-HHH
Q 010080 361 KKEAAWVLSNIAAGS----VEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHL-VSL 434 (518)
Q Consensus 361 ~~~a~~~Lsnl~~~~----~~~~~~li~~-~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~-~~l 434 (518)
+.+|+.+|.||+... ++..+.++.. |++|.|.++|.+.+..+|++|+|+|+|++.+++ .+ +.+
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e-----------~i~~k~ 644 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL-----------TIAAKF 644 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG-----------GTGGGT
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH-----------HHHHHH
Confidence 789999999999875 3456778886 999999999999999999999999999997532 11 122
Q ss_pred Hh------cCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcC--CCHHHHHHHHHHH
Q 010080 435 VG------RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH--ENEDLRNMANGLV 506 (518)
Q Consensus 435 ~~------~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~--~~~~i~~~a~~il 506 (518)
.+ .+.++.|+.++...|.+++..|.++|.++....+. ....+++..+|++.+..+... ++++++.++..++
T Consensus 645 ~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~-ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l 723 (778)
T 3opb_A 645 FNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL-IAKELLTKKELIENAIQVFADQIDDIELRQRLLMLF 723 (778)
T ss_dssp SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH-HHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 22 12488999999999999999999999999643221 123455556899988777666 8999999999999
Q ss_pred HhhcC
Q 010080 507 DKYFG 511 (518)
Q Consensus 507 ~~~f~ 511 (518)
...+.
T Consensus 724 ~NL~~ 728 (778)
T 3opb_A 724 FGLFE 728 (778)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98886
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=180.07 Aligned_cols=196 Identities=16% Similarity=0.108 Sum_probs=165.8
Q ss_pred CHHHHHHHhcCCCC-hHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080 126 AIPVLVQCLAFGSP-DEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 202 (518)
Q Consensus 126 ~ip~Lv~~L~~~~~-~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 202 (518)
.+|.||++|.++++ ...|..|+|+|.+++.++++.+..++ |+||.|+.+|.+ +++++++.|+|+|.||+.+++++|
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence 68999999998764 25678899999999998888888887 799999999988 789999999999999999889999
Q ss_pred HHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc----------------cC
Q 010080 203 NVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK----------------RA 265 (518)
Q Consensus 203 ~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~----------------~~ 265 (518)
..+.+.|+||+|+.+|. +.+.+++++++.+|+||+..+ .. +..+. .+++|.|+.++. ..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~--~~-k~~i~-~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND--KL-KNLMI-TEALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG--GG-HHHHH-HHHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh--hh-HHHHH-hccHHHHHHHHhccccCCcccccccccccc
Confidence 99999999999999998 568999999999999998653 22 33333 468999988763 12
Q ss_pred ChhHHHHHHHHHHHhhcCCchhhhHHHhc-CchHHHHHHHcc-----CCCccchhhhhhhhhhhhcC
Q 010080 266 DEELTTEVAWVVVYLSALSNVATSLLVKS-GVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAG 326 (518)
Q Consensus 266 d~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~~~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~ 326 (518)
+++++.++.++|.||+..+++..+.+.+. |+++.|+.++.. ..+.+.++.++.+|.|++..
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 56899999999999998777888888875 778999999862 13556788999999999854
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=9.9e-21 Score=175.53 Aligned_cols=192 Identities=16% Similarity=0.188 Sum_probs=156.1
Q ss_pred HHHHhcCCCCH--HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080 86 SAVAYHGKGAM--QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA 163 (518)
Q Consensus 86 ~~l~~~~s~~~--~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~ 163 (518)
.+++.++++|+ +.+..|+..++. ++....+....+++.|+||.||++|++++ +.+|.+|+|+|+|++.++++++..
T Consensus 12 ~lV~lL~s~~~~~~~q~~Aa~~l~~-L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 12 RAVSMLEADHMLPSRISAAATFIQH-ECFQKSEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHTCCSSCCCHHHHHHHHHHHHH-HHHHCHHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHH-HHcCCcHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34445568888 888999999988 55444456678889999999999999865 778899999999999998999998
Q ss_pred hc--CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC----------------CCChhH
Q 010080 164 LL--PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML----------------PNKGST 225 (518)
Q Consensus 164 v~--~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~----------------~~~~~~ 225 (518)
++ |+||.|+.+|.++.+.+++++|+.+|.|++. .+.+|..+.+. ++|+|+.++. ..+..+
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 88 8999999999854689999999999999998 56778888774 6999998763 125689
Q ss_pred HHHHHHHHHHhhcCCCCCchhhHHHh-hchHHHHHHHhcc------CChhHHHHHHHHHHHhhcC
Q 010080 226 VRTAAWALSNLIKGPDPKPATELIKV-DGLLDAILRHLKR------ADEELTTEVAWVVVYLSAL 283 (518)
Q Consensus 226 ~~~a~~~L~nL~~~~~~~~~~~~i~~-~~~l~~L~~lL~~------~d~~v~~~a~~~L~~L~~~ 283 (518)
+++++++|.||+... + ..+..+.. .|+++.|+.+++. .|...++++..+|.||+..
T Consensus 168 ~~na~~~L~nLss~~-~-~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAG-A-DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSC-H-HHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCC-H-HHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999653 2 23444543 4788999999984 2568899999999999863
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.73 E-value=1.1e-16 Score=178.74 Aligned_cols=350 Identities=13% Similarity=0.107 Sum_probs=250.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH---
Q 010080 87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA--- 163 (518)
Q Consensus 87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~--- 163 (518)
+++.+.+.++..+..+...+..+.+.+....+ .+++|.|++.+.+++ ...+..|+++|..++...+.....
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~ 168 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVL 168 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhhh
Confidence 34456778888899999999997776522211 467899999998654 445556999999998654433221
Q ss_pred ---hcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 010080 164 ---LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGP 240 (518)
Q Consensus 164 ---v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~ 240 (518)
+-..+|.|+.++.+ ++..++..|+++|+++....+..-. -.-...++.|..++.+++..+++.++++|..++...
T Consensus 169 ~~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~-~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~ 246 (852)
T 4fdd_A 169 DRPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALM-LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR 246 (852)
T ss_dssp SSCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHH-TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 11368888888886 7899999999999998864332110 011246788888888889999999999999999753
Q ss_pred CCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh---cCchHHHHHHHc----------cC
Q 010080 241 DPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK---SGVLQLLVERLA----------TS 307 (518)
Q Consensus 241 ~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~---~g~~~~Lv~lL~----------~~ 307 (518)
+...... ..++++.++.++.+.+++++..+++++..++.... ..+ .+. ..+++.++..+. .+
T Consensus 247 -~~~~~~~--l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 247 -MDRLLPH--MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp -HHHHGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred -HHHHHHH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 2211112 23688888999999999999999999999986431 111 111 234555655551 12
Q ss_pred -----------CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH
Q 010080 308 -----------NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV 376 (518)
Q Consensus 308 -----------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~ 376 (518)
.+..++..+..+|+.++...+. .++ ..+++.+..++.++++.+|..|+|++++++.+..
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-------~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~ 391 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-------PHILPLLKELLFHHEWVVKESGILVLGAIAEGCM 391 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGG---GGH-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhccH---HHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch
Confidence 2335677888899988865432 222 2588899999999999999999999999999887
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHH
Q 010080 377 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 456 (518)
Q Consensus 377 ~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~ 456 (518)
+.....+ .+++|.++..+++.++.||..|+|+|++++........ .-.-.++++.|+..|.++++.++.
T Consensus 392 ~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----------~~~~~~ll~~L~~~L~d~~~~vr~ 460 (852)
T 4fdd_A 392 QGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP----------DTYLKPLMTELLKRILDSNKRVQE 460 (852)
T ss_dssp HHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT----------TTTHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH----------HHHHHHHHHHHHHHHhCCCHHHHH
Confidence 6555433 35899999999999999999999999999753100000 001124688899999889999999
Q ss_pred HHHHHHHHHHccCC
Q 010080 457 LGLQFMELVLRGMP 470 (518)
Q Consensus 457 ~~l~~l~~il~~~~ 470 (518)
.++.+|.++++.+.
T Consensus 461 ~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 461 AACSAFATLEEEAC 474 (852)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987643
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.72 E-value=3.9e-16 Score=150.72 Aligned_cols=259 Identities=14% Similarity=0.082 Sum_probs=201.1
Q ss_pred HHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh
Q 010080 121 ALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE 200 (518)
Q Consensus 121 ~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~ 200 (518)
....+.++.|+..|..++ +..+..|+++|.++.. + ++++.|+.+|.+ +++.++..|+|+|+++......
T Consensus 19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~-------~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q-------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H-------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c-------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhcccccc
Confidence 345778999999998654 5677789999999873 1 257889999987 7899999999999999753322
Q ss_pred hHHHHHhcCChhHHH-hhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHH
Q 010080 201 FRNVLLSQGALPPLA-RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVY 279 (518)
Q Consensus 201 ~r~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 279 (518)
... .++.|. .++.+++..++..++|+|.+++... +. ....++|.|..++.++++.++..++++|.+
T Consensus 88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-~~------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKN-PI------YSPKIVEQSQITAFDKSTNVRRATAFAISV 154 (280)
T ss_dssp HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-GG------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-Cc------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 111 233343 2456778999999999999998542 11 124678999999999999999999999998
Q ss_pred hhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhh
Q 010080 280 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 359 (518)
Q Consensus 280 L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~ 359 (518)
+.. .+.++.|+.+| .++++.++..++++|+.+...+ ..+++.|..++.++++.
T Consensus 155 ~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~---------------~~~~~~L~~~l~d~~~~ 207 (280)
T 1oyz_A 155 IND-----------KATIPLLINLL-KDPNGDVRNWAAFAININKYDN---------------SDIRDCFVEMLQDKNEE 207 (280)
T ss_dssp C--------------CCHHHHHHHH-TCSSHHHHHHHHHHHHHHTCCC---------------HHHHHHHHHHTTCSCHH
T ss_pred cCC-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHhhccCc---------------HHHHHHHHHHhcCCCHH
Confidence 764 24789999988 5788899999999999984222 25889999999999999
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc
Q 010080 360 LKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 439 (518)
Q Consensus 360 i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~ 439 (518)
+|..|+++|+++. +...+|.|+..+++++ ++..|+++|..+.. ..+
T Consensus 208 vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------------~~~ 253 (280)
T 1oyz_A 208 VRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD---------------------KTL 253 (280)
T ss_dssp HHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------------GGG
T ss_pred HHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------------hhh
Confidence 9999999999985 2347899999998755 89999999999832 136
Q ss_pred hHHHHHhhcc-CCHHHHHHHHHHHHH
Q 010080 440 LSGFIDLVRS-ADIEAARLGLQFMEL 464 (518)
Q Consensus 440 i~~L~~lL~~-~d~~~~~~~l~~l~~ 464 (518)
++.|..++.. ++++++..+++++.+
T Consensus 254 ~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 254 LPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred hHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 7888888864 677888777776653
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.70 E-value=5.7e-16 Score=172.99 Aligned_cols=396 Identities=13% Similarity=0.085 Sum_probs=273.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080 83 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK 162 (518)
Q Consensus 83 ~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~ 162 (518)
-+..++..+.+.++..+..|...|++.+...- ..+..-.+..+-+.+++.|..+ ++.++..++.+++.|+..... .
T Consensus 49 ~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w-~~~~~~~~~~ik~~ll~~l~~~-~~~vr~~~a~~i~~ia~~~~~--~ 124 (852)
T 4fdd_A 49 YLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF-QNFPNGVTDFIKSECLNNIGDS-SPLIRATVGILITTIASKGEL--Q 124 (852)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSG-GGCCHHHHHHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHHHTTT--T
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCc--c
Confidence 34445555467889999999999999886531 1122223445666777777644 356667799999999964321 1
Q ss_pred HhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHH----hcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080 163 ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLL----SQGALPPLARMMLPNKGSTVRTAAWALSNLIK 238 (518)
Q Consensus 163 ~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~----~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 238 (518)
..-+.+|.|+..+.+ ++..+++.++++|+.++.+.+..-..-. -..++|.++.++++++..++..|+++|.+++.
T Consensus 125 ~wp~ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~ 203 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFII 203 (852)
T ss_dssp TCTTHHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 222578999999987 7899999999999999975433211100 12467888888888899999999999999886
Q ss_pred CCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhh
Q 010080 239 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLR 318 (518)
Q Consensus 239 ~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~ 318 (518)
.. +...... ...+++.+..++.+++++++..++++|..++...++.....+. ++++.++..+ .+.+..++..|+.
T Consensus 204 ~~-~~~~~~~--~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e 278 (852)
T 4fdd_A 204 SR-TQALMLH--IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACE 278 (852)
T ss_dssp TT-CHHHHTS--HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHH
T ss_pred cc-cHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHH
Confidence 53 2111111 2368889999999999999999999999999855544333222 4677777777 4678889999999
Q ss_pred hhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc-----------c-----------ChhhhHHHHHHHHHHhccCCH
Q 010080 319 SLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-----------S-----------EHRVLKKEAAWVLSNIAAGSV 376 (518)
Q Consensus 319 ~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-----------~-----------~~~~i~~~a~~~Lsnl~~~~~ 376 (518)
++..++..... ...+.. .-..++|.++..+. . ....+|+.|+.+++.++...+
T Consensus 279 ~l~~l~~~~~~--~~~~~~---~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~ 353 (852)
T 4fdd_A 279 FWLTLAEQPIC--KDVLVR---HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR 353 (852)
T ss_dssp HHHHHTTSTTH--HHHHTT---THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHhcchhH--HHHHHH---HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc
Confidence 99998754311 111110 12357888888772 2 234678999999999876432
Q ss_pred HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHH
Q 010080 377 EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 456 (518)
Q Consensus 377 ~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~ 456 (518)
+. ++. .++|.+.+.+.+.+..+|..|+++|++++.+. + +.+.. .-.++++.++.+|.++++.+..
T Consensus 354 ~~---~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~------~----~~~~~-~l~~~l~~l~~~l~d~~~~Vr~ 418 (852)
T 4fdd_A 354 DE---LLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGC------M----QGMIP-YLPELIPHLIQCLSDKKALVRS 418 (852)
T ss_dssp GG---GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT------H----HHHGG-GHHHHHHHHHHHTTCSSHHHHH
T ss_pred HH---HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc------h----HHHHH-HHHHHHHHHHHHcCCCCHHHHH
Confidence 21 222 36788888889999999999999999998742 1 22221 1235789999999999999999
Q ss_pred HHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080 457 LGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510 (518)
Q Consensus 457 ~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f 510 (518)
.+++++.++....+....... -.+.++.|.....++++.++..|...+..+.
T Consensus 419 ~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 419 ITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp HHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 999999988764321111111 1234566666667789999999988887654
No 42
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.69 E-value=4.2e-16 Score=166.61 Aligned_cols=363 Identities=16% Similarity=0.143 Sum_probs=250.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC
Q 010080 87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP 166 (518)
Q Consensus 87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~ 166 (518)
+.+.++++|+..+-.|+..+.++- .+.+ ...++|.+.++|.++ ++.++..|++++.+++...++.... -+
T Consensus 91 l~kdL~~~n~~ir~~AL~~L~~i~----~~~~----~~~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~~~~~-~~ 160 (591)
T 2vgl_B 91 FVKDCEDPNPLIRALAVRTMGCIR----VDKI----TEYLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQMVED-QG 160 (591)
T ss_dssp HGGGSSSSSHHHHHHHHHHHHTCC----SGGG----HHHHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCCCHHH-HH
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCC----hHHH----HHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChhhccc-cc
Confidence 334567888888887877666531 2322 134678899999854 4677788999999999766543221 14
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
.+|.|..+|.+ +++.|+..|+++|+.++.++++.+...+..+.++.|+..+...++-.+...+.++..++.. ...
T Consensus 161 ~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~----~~~ 235 (591)
T 2vgl_B 161 FLDSLRDLIAD-SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK----DDR 235 (591)
T ss_dssp HHHHHHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC----SHH
T ss_pred HHHHHHHHhCC-CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC----ChH
Confidence 78999999986 7899999999999999987654321111223466677777666777777777888777632 112
Q ss_pred hHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC---CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhh
Q 010080 247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL---SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNL 323 (518)
Q Consensus 247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl 323 (518)
+ ...+++.+..++++.++.|+..|+|++.++... +++..+.+. ..+.+.|+.++ +++++++..++++|+.+
T Consensus 236 ~---~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~--~~d~~vr~~aL~~l~~i 309 (591)
T 2vgl_B 236 E---AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLL--SGEPEVQYVALRNINLI 309 (591)
T ss_dssp H---HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHT--TSCHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 1 357888999999999999999999999999852 233444332 34567777654 47889999999999999
Q ss_pred hcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHH
Q 010080 324 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIK 403 (518)
Q Consensus 324 ~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~ 403 (518)
+...+......+ ..+. .+.+.+..||.+|++++.+++... +++. +++.|...+.+.+.+++
T Consensus 310 ~~~~p~~~~~~~-----------~~~~-~~~~d~~~Ir~~al~~L~~l~~~~--nv~~-----iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 310 VQKRPEILKQEI-----------KVFF-VKYNDPIYVKLEKLDIMIRLASQA--NIAQ-----VLAELKEYATEVDVDFV 370 (591)
T ss_dssp HHHCCSTTTTCT-----------TTTS-CCTTSCHHHHHHHHHHHHHTCCSS--THHH-----HHHHHHHHTTSSCHHHH
T ss_pred HHhChHHHHHHH-----------Hhhe-eccCChHHHHHHHHHHHHHHCChh--hHHH-----HHHHHHHHHhcCCHHHH
Confidence 976554332221 1111 122334799999999999997543 3332 56678888999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhch
Q 010080 404 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDG 483 (518)
Q Consensus 404 ~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~gg 483 (518)
++++++|++++... | .. ...+++.|+++|...+..+...++.++..|++..++. ...+
T Consensus 371 ~~~v~aI~~la~~~------~----~~-----~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-------~~~~ 428 (591)
T 2vgl_B 371 RKAVRAIGRCAIKV------E----QS-----AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-------YESI 428 (591)
T ss_dssp HHHHHHHHHHHTTC------H----HH-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-------CCTT
T ss_pred HHHHHHHHHHHHhC------h----hH-----HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-------HHHH
Confidence 99999999998742 1 11 1346889999999988888888888899988765431 1223
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHhhcC
Q 010080 484 IDAMER-FQFHENEDLRNMANGLVDKYFG 511 (518)
Q Consensus 484 l~~l~~-L~~~~~~~i~~~a~~il~~~f~ 511 (518)
+..|.. +.....+++...+.++|-+|-.
T Consensus 429 v~~L~~~l~~~~~~~~~~~~~wilGey~~ 457 (591)
T 2vgl_B 429 IATLCENLDSLDEPDARAAMIWIVGEYAE 457 (591)
T ss_dssp HHHHHHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcccc
Confidence 333422 3334566677777777776643
No 43
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.68 E-value=5e-15 Score=157.90 Aligned_cols=342 Identities=10% Similarity=0.096 Sum_probs=247.1
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-hh
Q 010080 124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF 201 (518)
Q Consensus 124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~~ 201 (518)
..++|.+..+++.++ ...+..|+.+|..++..... .... ..+|.++.++.+ ++++++..|+++|+.++.... ..
T Consensus 241 ~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 241 ALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhChhh
Confidence 346666666665433 44555577777777642111 1112 468888899887 789999999999999986432 22
Q ss_pred HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhh
Q 010080 202 RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLS 281 (518)
Q Consensus 202 r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 281 (518)
+.......++|.+..++++++..++..++|+|..++..-. .+.. ...++|.+..++.+++++++..++.+|..+.
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~----~~~~-~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG----KDNT-IEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC----HHHH-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh----HhHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 2223344567888899999999999999999999985421 1111 2468899999999999999999999999888
Q ss_pred cCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhH
Q 010080 282 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK 361 (518)
Q Consensus 282 ~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~ 361 (518)
...... .....+++.+..++ .+.+..++..++.+++.++..-... .. ...++|.+..++.++++.+|
T Consensus 392 ~~~~~~---~~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~---~~------~~~l~~~l~~~l~d~~~~Vr 458 (588)
T 1b3u_A 392 EVIGIR---QLSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLGVE---FF------DEKLNSLCMAWLVDHVYAIR 458 (588)
T ss_dssp HHSCHH---HHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCGG---GC------CHHHHHHHHHGGGCSSHHHH
T ss_pred HhcCHH---HHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHcCHH---HH------HHHHHHHHHHHhcCCcHHHH
Confidence 632211 12245678888877 4778889999999999987532211 11 13588999999999999999
Q ss_pred HHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCch
Q 010080 362 KEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCL 440 (518)
Q Consensus 362 ~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i 440 (518)
..|+.+++.++.. .++. .-..++|.|..++.+.++.+|..++++++.++... . ....-..++
T Consensus 459 ~~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~-----------~--~~~~~~~~~ 521 (588)
T 1b3u_A 459 EAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-----------G--QDITTKHML 521 (588)
T ss_dssp HHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHTH
T ss_pred HHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc-----------C--HHHHHHHHH
Confidence 9999999999764 2221 12348899999889999999999999999997521 0 111234588
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080 441 SGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 509 (518)
Q Consensus 441 ~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~ 509 (518)
+.|..++.++++.+...+++++..+...... .. .....+..|..+..+++++++..|...+...
T Consensus 522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----~~-~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 522 PTVLRMAGDPVANVRFNVAKSLQKIGPILDN----ST-LQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH----HH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHhhCCCCCchHHHHHHHHHHHHHHHhch----hh-hHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 9999999999999999999999999865421 11 1234456677888999999999999988765
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.68 E-value=4.6e-14 Score=146.08 Aligned_cols=321 Identities=15% Similarity=0.195 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCC-CChHHHHHHHHHHHHHhcCC
Q 010080 79 SAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-SPDEQLLEAAWCLTNIAAGK 157 (518)
Q Consensus 79 ~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~-~~~~~~~eA~~~L~nia~~~ 157 (518)
.+++.|..-++ ++.-.+.+..|+..|+.+ ++. .+ ..+.++++|.|+..|+.+ ++.+....++..|.++.+..
T Consensus 21 etI~~L~~Rl~--~~tl~eDRR~Av~~Lk~~-sk~-y~---~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 21 ETIQKLCDRVA--SSTLLDDRRNAVRALKSL-SKK-YR---LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHH--HCCSHHHHHHHHHHHHHT-TTT-TT---THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHh--hccchhHHHHHHHHHHHH-HHH-hH---HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence 45667777666 466789999999999995 542 22 245688999999999875 34455566888888876543
Q ss_pred hH-----------------HHHHhc---CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh-hHHHHHhc-CChhHHH
Q 010080 158 QE-----------------ETKALL---PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQ-GALPPLA 215 (518)
Q Consensus 158 ~~-----------------~~~~v~---~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~-g~i~~L~ 215 (518)
.+ .++.++ +.++.|+.+|.+ ++..++..++.+|..|+...++ .++.++.. ++|+.|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 22 223443 489999999987 7899999999999999987766 88888855 9999999
Q ss_pred hhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCCh----hHHHHHHHHHHHhhcCCchhhhHH
Q 010080 216 RMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADE----ELTTEVAWVVVYLSALSNVATSLL 291 (518)
Q Consensus 216 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~----~v~~~a~~~L~~L~~~~~~~~~~~ 291 (518)
.+|.++...++-.++..|.+|+++. ....+++.-.|+++.|++++..+.. .+..+|+-+|.+|.+++..+...+
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n--~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~F 250 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSN--GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFF 250 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCC--HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999874 3455677667999999999986544 789999999999999888788889
Q ss_pred HhcCchHHHHHHHccCCCcc------chh---hhhhhhhhhhcCCCc------ccceeeccCCCchhhhHHHHHHHhccC
Q 010080 292 VKSGVLQLLVERLATSNSLQ------LLI---PVLRSLGNLVAGDSS------TISDVLVPGHGITDQVIAVLVKCLKSE 356 (518)
Q Consensus 292 ~~~g~~~~Lv~lL~~~~~~~------v~~---~al~~L~nl~~~~~~------~~~~~i~~G~~~~~~~l~~L~~lL~~~ 356 (518)
.+.|.++.|..+|. .+... ... .++.++.-++..... ....+. +.|+++.|++++...
T Consensus 251 rEt~~i~~L~~LL~-~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~------~~g~l~~Ll~ll~~~ 323 (651)
T 3grl_A 251 KEGSYIQRMKPWFE-VGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMF------QCGLLQQLCTILMAT 323 (651)
T ss_dssp HHTTCGGGGGGGGC-CCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH------HTTHHHHHHHHHTCS
T ss_pred HHcCCHHHHHHHhC-CCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH------HCCCHHHHHHHHccC
Confidence 99999999999884 33221 112 256666666655332 112233 347999999998765
Q ss_pred --hhhhHHHHHHHHHHhccCCHHHHHHHHhCC-----CHHHHHHH----hc-CCChhHHHHHHHHHHHhcCC
Q 010080 357 --HRVLKKEAAWVLSNIAAGSVEHKQLIHSSE-----ALALLLHL----LS-TSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 357 --~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~-----~i~~Li~l----L~-~~~~~v~~eA~~aL~nl~~~ 416 (518)
...++.+|+.+++.+..+++.....+.... -.|.++.+ +. ...+++|.+|++++..+..+
T Consensus 324 ~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 324 GVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence 458999999999999999987776666533 23444443 43 35689999999999998874
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.67 E-value=1.9e-14 Score=153.78 Aligned_cols=375 Identities=13% Similarity=0.133 Sum_probs=257.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~ 161 (518)
.++.+.+ .++|...+.+++..+-.+...+.+. +.+.+.+++++.+++ ...+.-+..++.+++...++.
T Consensus 16 ~~i~~~L---~~~~~~~k~~~~~kli~~~~~G~d~-------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~e~- 83 (591)
T 2vgl_B 16 FELKAEL---NNEKKEKRKEAVKKVIAAMTVGKDV-------SSLFPDVVNCMQTDN-LELKKLVYLYLMNYAKSQPDM- 83 (591)
T ss_dssp HHHHHHT---TSSCHHHHHHHHHHHHHHHHTTCCC-------GGGHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHSHHH-
T ss_pred HHHHHHH---cCCCHHHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccCchH-
Confidence 4565555 5888999999998888876665432 335777888887655 455555777888887654443
Q ss_pred HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080 162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 241 (518)
++-+++.|.+-|.+ +++.++..|+.+|+++.. ++.... .++.+.+++.++++.+++.|++++..+++..
T Consensus 84 --~~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~~--~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~- 152 (591)
T 2vgl_B 84 --AIMAVNSFVKDCED-PNPLIRALAVRTMGCIRV--DKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN- 152 (591)
T ss_dssp --HHTTHHHHGGGSSS-SSHHHHHHHHHHHHTCCS--GGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-
T ss_pred --HHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCh--HHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-
Confidence 34567888888887 899999999999999973 444333 3578999999999999999999999999743
Q ss_pred CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 321 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~ 321 (518)
|. .+...+++|.+..+|.++|+.|+..|+++|..++..+++........+.+..|+..+. ..++-.+...+++++
T Consensus 153 p~----~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~-~~~~~~q~~il~~l~ 227 (591)
T 2vgl_B 153 AQ----MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN-ECTEWGQIFILDCLS 227 (591)
T ss_dssp CC----CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHH
T ss_pred hh----hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC-CCCchHHHHHHHHHH
Confidence 33 2233578999999999999999999999999999755432111122345677777774 456667778889998
Q ss_pred hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC---CHHHHHHHHhCCCHHHHHHHhcCC
Q 010080 322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTS 398 (518)
Q Consensus 322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~---~~~~~~~li~~~~i~~Li~lL~~~ 398 (518)
++...++.. ...+++.+..++.+.++.|+.+|++++.++... +++..+.+.. .+.+.|+.++. +
T Consensus 228 ~l~~~~~~~-----------~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~ 294 (591)
T 2vgl_B 228 NYNPKDDRE-----------AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-G 294 (591)
T ss_dssp TSCCCSHHH-----------HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-S
T ss_pred HhCCCChHH-----------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-C
Confidence 887543321 135888999999999999999999999999742 3344444433 36777887664 7
Q ss_pred ChhHHHHHHHHHHHhcCCCCCC-C----------CCchhHHHH-HH---HHHhc----CchHHHHHhhccCCHHHHHHHH
Q 010080 399 PFDIKKEVAYVLGNLCVSPTEG-E----------GKPKLIQEH-LV---SLVGR----GCLSGFIDLVRSADIEAARLGL 459 (518)
Q Consensus 399 ~~~v~~eA~~aL~nl~~~~~~~-~----------~~~~~~~~~-~~---~l~~~----g~i~~L~~lL~~~d~~~~~~~l 459 (518)
+..+|..|+.+|..++...... . ..|..|+.. +. .+.+. .+++.|..++...|.+++..+.
T Consensus 295 d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v 374 (591)
T 2vgl_B 295 EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAV 374 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7889999998888886531100 0 111111100 01 11122 2455666777778888888888
Q ss_pred HHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHH
Q 010080 460 QFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANG 504 (518)
Q Consensus 460 ~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~ 504 (518)
++|..+....+ .. ....++.|-++..+.+..+...+..
T Consensus 375 ~aI~~la~~~~-----~~--~~~~v~~Ll~ll~~~~~~v~~e~i~ 412 (591)
T 2vgl_B 375 RAIGRCAIKVE-----QS--AERCVSTLLDLIQTKVNYVVQEAIV 412 (591)
T ss_dssp HHHHHHHTTCH-----HH--HHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCh-----hH--HHHHHHHHHHHHcccchHHHHHHHH
Confidence 88888875432 11 1234566666667777766665543
No 46
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.67 E-value=9.7e-15 Score=155.66 Aligned_cols=375 Identities=13% Similarity=0.125 Sum_probs=270.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CCh
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PAL 168 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v 168 (518)
.++.+++..+..|+..|.++...... ......++|.|..+++.++ +..+..|+.+|..++...+.. ... ..+
T Consensus 172 l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~~~~ 244 (588)
T 1b3u_A 172 LCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--DLEALVM 244 (588)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--HHHHHTH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence 34677888999999999887654321 1334678999999887554 555556899999988543321 222 378
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080 169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL 248 (518)
Q Consensus 169 ~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 248 (518)
|.+..++.+ ++..+|..++.+|+.++.... ........+|.+..++++++..++..++++|..++....+.. ...
T Consensus 245 ~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~ 319 (588)
T 1b3u_A 245 PTLRQAAED-KSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC-REN 319 (588)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT-HHH
T ss_pred HHHHHHccC-CCHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh-hhh
Confidence 888888876 789999999999999985211 112334568999999999999999999999999997643221 100
Q ss_pred HHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC
Q 010080 249 IKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS 328 (518)
Q Consensus 249 i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~ 328 (518)
.....++|.+..++.+.+..++..++|+|..++..-... .....+++.+..++ .+.++.++..++.+++.++....
T Consensus 320 ~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~ 395 (588)
T 1b3u_A 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVIG 395 (588)
T ss_dssp HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhcC
Confidence 123578999999999999999999999999998521111 11234678888888 46778899999999998875432
Q ss_pred cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHH
Q 010080 329 STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA 407 (518)
Q Consensus 329 ~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~ 407 (518)
.. .. ...++|.|..++.+.++.+|..++.+++.++.. +.+ .....++|.+...|++.+..||..|+
T Consensus 396 ~~--~~-------~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~ 462 (588)
T 1b3u_A 396 IR--QL-------SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAAT 462 (588)
T ss_dssp HH--HH-------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HH--HH-------HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 11 11 135889999999999999999999999998742 111 11123678899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHH
Q 010080 408 YVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAM 487 (518)
Q Consensus 408 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l 487 (518)
.++..++... | .+ .....+++.|..++.+++..+...+++++..+....+. . ......++.|
T Consensus 463 ~~l~~l~~~~----~-----~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~----~-~~~~~~~~~l 524 (588)
T 1b3u_A 463 SNLKKLVEKF----G-----KE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ----D-ITTKHMLPTV 524 (588)
T ss_dssp HHHHHHHHHH----C-----HH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH----H-HHHHHTHHHH
T ss_pred HHHHHHHHHh----C-----ch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH----H-HHHHHHHHHH
Confidence 9999997631 1 11 11245788888888888999999999999988754321 1 1122355667
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhcC
Q 010080 488 ERFQFHENEDLRNMANGLVDKYFG 511 (518)
Q Consensus 488 ~~L~~~~~~~i~~~a~~il~~~f~ 511 (518)
..+..+++++++..+...+..++.
T Consensus 525 ~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 525 LRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HhhCCCCCchHHHHHHHHHHHHHH
Confidence 777888999999988888877653
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.66 E-value=1.4e-14 Score=139.77 Aligned_cols=254 Identities=11% Similarity=0.033 Sum_probs=194.9
Q ss_pred CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
.+++.|+..|.+ +++.++..|+|+|+++.. .+.++.|+.++.+++..++..++|+|..+.... ..
T Consensus 23 ~~i~~L~~~L~~-~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~~- 87 (280)
T 1oyz_A 23 LNDDELFRLLDD-HNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KC- 87 (280)
T ss_dssp SCHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TT-
T ss_pred hhHHHHHHHHHc-CCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--cc-
Confidence 478999999987 789999999999999863 235888999999999999999999999986321 11
Q ss_pred hhHHHhhchHHHHHH-HhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080 246 TELIKVDGLLDAILR-HLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~ 324 (518)
...+++.|.. ++.++++.++..++|+|+++....+.. ...+++.|+.+| .++++.++..++++|+++.
T Consensus 88 -----~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 88 -----EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITA-FDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp -----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred -----chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence 1245566653 567889999999999999998533222 224578888888 5888999999999999874
Q ss_pred cCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHH
Q 010080 325 AGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKK 404 (518)
Q Consensus 325 ~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~ 404 (518)
.. .+++.|..++.++++.+|..|+|+|+++....+. +++.|+.+|++.++.+|.
T Consensus 157 ~~-----------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~ 210 (280)
T 1oyz_A 157 DK-----------------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRI 210 (280)
T ss_dssp -------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHH
T ss_pred CH-----------------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHH
Confidence 21 3789999999999999999999999999544432 568899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchH
Q 010080 405 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGI 484 (518)
Q Consensus 405 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl 484 (518)
.|+++|+++.. ..+++.|+.+|.+++ +...+.++|..+- . ...+
T Consensus 211 ~A~~aL~~~~~---------------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~---~----------~~~~ 254 (280)
T 1oyz_A 211 EAIIGLSYRKD---------------------KRVLSVLCDELKKNT--VYDDIIEAAGELG---D----------KTLL 254 (280)
T ss_dssp HHHHHHHHTTC---------------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC---C----------GGGH
T ss_pred HHHHHHHHhCC---------------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC---c----------hhhh
Confidence 99999999842 136788888887765 6667777777661 1 1345
Q ss_pred HHHHHH-hcCCCHHHHHHHHHHHH
Q 010080 485 DAMERF-QFHENEDLRNMANGLVD 507 (518)
Q Consensus 485 ~~l~~L-~~~~~~~i~~~a~~il~ 507 (518)
+.|..+ ..++++++...+...+.
T Consensus 255 ~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 255 PVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHhh
Confidence 566554 45677787777766654
No 48
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.58 E-value=5.4e-14 Score=156.91 Aligned_cols=385 Identities=14% Similarity=0.179 Sum_probs=254.0
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCC---------------CCc-HHHHHHcCCHHHHHHHhcCC------CChHHHHHH
Q 010080 89 AYHGKGAMQKRVNALRELRRLLSRFE---------------FPP-IETALKAGAIPVLVQCLAFG------SPDEQLLEA 146 (518)
Q Consensus 89 ~~~~s~~~~~~~~a~~~lr~lls~~~---------------~~~-~~~~i~~g~ip~Lv~~L~~~------~~~~~~~eA 146 (518)
..+.+.+...+..|+..+..+..... .+. ....+ ..++|.++..|... +.......|
T Consensus 273 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a 351 (861)
T 2bpt_A 273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHH
Confidence 35567788889999988877655321 111 11122 56889999988742 123455668
Q ss_pred HHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-h-hHHHHHhcCChhHHHhhhCCCCh
Q 010080 147 AWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-E-FRNVLLSQGALPPLARMMLPNKG 223 (518)
Q Consensus 147 ~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~-~r~~~~~~g~i~~L~~ll~~~~~ 223 (518)
+.+|..++.... ..++ ..+|.+...+.+ .+..+++.|+++|+.++.... . .... +. .+++.|+..+.++++
T Consensus 352 ~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~-l~-~il~~l~~~l~d~~~ 425 (861)
T 2bpt_A 352 GACLQLFAQNCG---NHILEPVLEFVEQNITA-DNWRNREAAVMAFGSIMDGPDKVQRTYY-VH-QALPSILNLMNDQSL 425 (861)
T ss_dssp HHHHHHHHHHHG---GGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHH-HH-HHHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHcc---HhHHHHHHHHHHHHcCC-CChhHHHHHHHHHHHHHcCCCHHHHHHH-HH-HHHHHHHHHcCCCcH
Confidence 999999885322 2233 367777778876 689999999999999997532 2 2222 22 468888888888899
Q ss_pred hHHHHHHHHHHHhhcCCCCCc-hhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc----hhhhHHHhcCchH
Q 010080 224 STVRTAAWALSNLIKGPDPKP-ATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN----VATSLLVKSGVLQ 298 (518)
Q Consensus 224 ~~~~~a~~~L~nL~~~~~~~~-~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~----~~~~~~~~~g~~~ 298 (518)
.++..++|++..++....+.. .... ...++|.++..+.++ +.++..+||+|.+++.+.. ......+ ..+++
T Consensus 426 ~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~ 501 (861)
T 2bpt_A 426 QVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVD 501 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHH
Confidence 999999999999986421110 0112 247889999988765 8999999999999986421 1221111 34577
Q ss_pred HHHHHHcc-CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC---------------hhhhHH
Q 010080 299 LLVERLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE---------------HRVLKK 362 (518)
Q Consensus 299 ~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~---------------~~~i~~ 362 (518)
.|+..+.. ..+..++..++.+++.++..........+ ..++|.++..+... ...++.
T Consensus 502 ~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-------~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 574 (861)
T 2bpt_A 502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-------ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS 574 (861)
T ss_dssp HHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-------HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-------HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHH
Confidence 78887742 22367888999999999976654433333 24777777776531 346888
Q ss_pred HHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCCh-hHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchH
Q 010080 363 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPF-DIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLS 441 (518)
Q Consensus 363 ~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~-~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~ 441 (518)
.+++++++++......+....+ .+++.++.++++.+. .++..+++++++++... |. +...++- .+++
T Consensus 575 ~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~----~~-----~~~~~l~--~i~~ 642 (861)
T 2bpt_A 575 NILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASL----GK-----GFEKYLE--TFSP 642 (861)
T ss_dssp HHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH----GG-----GGHHHHH--HHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH----hh-----hHHHHHH--HHHH
Confidence 9999999998754433333333 478888899988777 89999999999997632 10 1112222 2788
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCC--HHHHHHHHHHH
Q 010080 442 GFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHEN--EDLRNMANGLV 506 (518)
Q Consensus 442 ~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~--~~i~~~a~~il 506 (518)
.|...|..+++++...++.++..+.+..+. .....+ ...++.+.....+++ ++++..+...+
T Consensus 643 ~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 643 YLLKALNQVDSPVSITAVGFIADISNSLEE-DFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVF 706 (861)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-GGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHhch-hccchH--HHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence 899999888888999999999999876542 111111 122344444444443 66766664444
No 49
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.56 E-value=5.3e-12 Score=130.73 Aligned_cols=356 Identities=14% Similarity=0.125 Sum_probs=240.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH
Q 010080 81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALK-AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 159 (518)
Q Consensus 81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~-~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~ 159 (518)
.+.+.-++..+.+.|...++.+++.|..++...+....+.++. .+++|.|+.+|+.+. +.++-+|+..|++++.++++
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHTTCHH
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhcCCHH
Confidence 3556667777789999999999999999877654323345665 499999999998654 66777899999999999876
Q ss_pred HHHHhc--CChHHHHHhhcCCC---CHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCCh------hHHHH
Q 010080 160 ETKALL--PALPLLIAHLGEKS---SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKG------STVRT 228 (518)
Q Consensus 160 ~~~~v~--~~v~~Lv~lL~~~~---~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~------~~~~~ 228 (518)
.-+.+. |+++.|+.++.... ...+.+-|+.+|.|+...++.++..+.+.|++|.|..+++.+.. ....+
T Consensus 200 iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N 279 (651)
T 3grl_A 200 IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTN 279 (651)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHH
Confidence 555554 89999999997621 34789999999999999999999999999999999999985421 23344
Q ss_pred ---HHHHHHHhhcCCCC----CchhhHHHhhchHHHHHHHhccC--ChhHHHHHHHHHHHhhcCCchhhhHHHhcC----
Q 010080 229 ---AAWALSNLIKGPDP----KPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSNVATSLLVKSG---- 295 (518)
Q Consensus 229 ---a~~~L~nL~~~~~~----~~~~~~i~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g---- 295 (518)
+.-++.-|+...++ ..+...+...|+++.|++++... ...++..++.+++.+.++++...+.+.+..
T Consensus 280 ~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~ 359 (651)
T 3grl_A 280 LHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSN 359 (651)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSS
T ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCC
Confidence 44555556654322 12334556789999999998865 568999999999999998876666665432
Q ss_pred -chHHHHHH----HccCCCccchhhhhhhhhhhhcCCCcccceee----cc-----CCCchhhhHHHHHHHhccChhhhH
Q 010080 296 -VLQLLVER----LATSNSLQLLIPVLRSLGNLVAGDSSTISDVL----VP-----GHGITDQVIAVLVKCLKSEHRVLK 361 (518)
Q Consensus 296 -~~~~Lv~l----L~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i----~~-----G~~~~~~~l~~L~~lL~~~~~~i~ 361 (518)
..+.++.+ +.......++..|+.++..++.+++.....++ .. +.....|. .|..-+.+.++.--
T Consensus 360 ~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~--ll~~~l~s~d~~~~ 437 (651)
T 3grl_A 360 PPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQ--LLCGGLFSTDSLSN 437 (651)
T ss_dssp SCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHH--HHHHHHTSSCHHHH
T ss_pred CCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcch--hhhhhhccCchHHH
Confidence 12334443 43344566788999999999888753211111 10 00111222 23444445566444
Q ss_pred HHHHHHHHHhccCCHHHHHHHHh------C-----CCHHHHHHHhcC-CChhHHHHHHHHHHHhcCCCCCCCCCchhHHH
Q 010080 362 KEAAWVLSNIAAGSVEHKQLIHS------S-----EALALLLHLLST-SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE 429 (518)
Q Consensus 362 ~~a~~~Lsnl~~~~~~~~~~li~------~-----~~i~~Li~lL~~-~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~ 429 (518)
-.|+.++..+..++++....+.. . -.++.+..+|.. .++.++---+..|+--.. +.| .
T Consensus 438 wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~------e~p----~ 507 (651)
T 3grl_A 438 WCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLS------NCP----I 507 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHT------TCH----H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHh------CCh----H
Confidence 56899999999998777665543 1 136666777754 344444333334444343 234 3
Q ss_pred HHHHHH-hcCchHHHHHhhcc
Q 010080 430 HLVSLV-GRGCLSGFIDLVRS 449 (518)
Q Consensus 430 ~~~~l~-~~g~i~~L~~lL~~ 449 (518)
-++.++ +...++.|+..+..
T Consensus 508 AV~dFL~~~s~l~~L~~~i~~ 528 (651)
T 3grl_A 508 AVTHFLHNSANVPFLTGQIAE 528 (651)
T ss_dssp HHHHHHHSTTHHHHHHHHHHS
T ss_pred HHHHHHcCCchHHHHHHHHHh
Confidence 334445 44569999988753
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.54 E-value=2.3e-13 Score=151.88 Aligned_cols=345 Identities=13% Similarity=0.183 Sum_probs=231.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHhc-CChHHHHH
Q 010080 96 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL-PALPLLIA 173 (518)
Q Consensus 96 ~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v~-~~v~~Lv~ 173 (518)
...+..|...|..+....... ++ ..++|.+.+.|.+.+ ...+..|+++|+.++.+.. +.....+ ..+|.++.
T Consensus 345 ~~~r~~a~~~L~~l~~~~~~~----~~-~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~ 418 (861)
T 2bpt_A 345 WNVSMSAGACLQLFAQNCGNH----IL-EPVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG----GH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHccHh----HH-HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 356666777776654322111 11 235566666666544 4455569999999997753 4444444 58899999
Q ss_pred hhcCCCCHHHHHHHHHHHHhhhCCChhh-HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC---CCchhhHH
Q 010080 174 HLGEKSSSPVAEQCAWALGNVAGEGEEF-RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD---PKPATELI 249 (518)
Q Consensus 174 lL~~~~~~~v~~~a~~~L~nla~d~~~~-r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~---~~~~~~~i 249 (518)
.+.+ +++.++..++|+|++++...... ...-.-..++|.|+..+.++ +.++..++|+|.+++.... +......
T Consensus 419 ~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~- 495 (861)
T 2bpt_A 419 LMND-QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF- 495 (861)
T ss_dssp GGGC-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG-
T ss_pred HcCC-CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH-
Confidence 9987 78999999999999998532110 00001123467777777765 8899999999999987532 1111122
Q ss_pred HhhchHHHHHHHhccCC--hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccC--------------CCccch
Q 010080 250 KVDGLLDAILRHLKRAD--EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATS--------------NSLQLL 313 (518)
Q Consensus 250 ~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~--------------~~~~v~ 313 (518)
...+++.|++++.+.| +.++..+++++..++..........+. .+++.++..|... ....++
T Consensus 496 -~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~ 573 (861)
T 2bpt_A 496 -YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ 573 (861)
T ss_dssp -HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHH
Confidence 2467888888888544 689999999999999754443332222 4566677766421 123456
Q ss_pred hhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChh-hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHH
Q 010080 314 IPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHR-VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL 392 (518)
Q Consensus 314 ~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~-~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li 392 (518)
..++.+|++++...+......+ ..+++.+..++.+.+. .++..+++++++++....+.....+. .++|.|.
T Consensus 574 ~~~~~~l~~l~~~~~~~~~~~~-------~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~ 645 (861)
T 2bpt_A 574 SNILTVLAAVIRKSPSSVEPVA-------DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLL 645 (861)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGH-------HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHH
Confidence 6889999999876554333333 3588889999988777 89999999999998643333333333 2889999
Q ss_pred HHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC--HHHHHHHHHHHHHHHccCC
Q 010080 393 HLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD--IEAARLGLQFMELVLRGMP 470 (518)
Q Consensus 393 ~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d--~~~~~~~l~~l~~il~~~~ 470 (518)
..+.+.++.++..|++++..++... +. .+..++ ..+++.++..|.+.+ +++...++.++..+....+
T Consensus 646 ~~l~~~~~~vr~~a~~~l~~l~~~~---~~---~~~~~~-----~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 646 KALNQVDSPVSITAVGFIADISNSL---EE---DFRRYS-----DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHHT---GG---GGHHHH-----HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred HHhccccHHHHHHHHHHHHHHHHHh---ch---hccchH-----HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 9998888899999999999997642 11 111122 245777888887754 7888889999988887543
No 51
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.50 E-value=1e-12 Score=146.95 Aligned_cols=379 Identities=16% Similarity=0.148 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCCh-HHHHHhc-CChHHHHH
Q 010080 96 MQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQ-EETKALL-PALPLLIA 173 (518)
Q Consensus 96 ~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~-~~~~~v~-~~v~~Lv~ 173 (518)
...+..|...+..+....... ++ ..++|.+...|.+.+ ...+..|+++|+.++.+.. +.....+ ..+|.++.
T Consensus 342 ~~~r~~a~~~l~~l~~~~~~~----~~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~ 415 (876)
T 1qgr_A 342 WNPCKAAGVCLMLLATCCEDD----IV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE 415 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHGGG----GH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcHh----hH-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 445666666666644322111 12 245666777776543 5555669999999998764 4443444 58999999
Q ss_pred hhcCCCCHHHHHHHHHHHHhhhCCChhh---HHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC---------
Q 010080 174 HLGEKSSSPVAEQCAWALGNVAGEGEEF---RNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD--------- 241 (518)
Q Consensus 174 lL~~~~~~~v~~~a~~~L~nla~d~~~~---r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~--------- 241 (518)
.|.+ +++.|+..|+|+|++++...+.. ... -..+++.|+..+.++ +.++..++|+|.+++....
T Consensus 416 ~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~ 491 (876)
T 1qgr_A 416 LMKD-PSVVVRDTAAWTVGRICELLPEAAINDVY--LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQ 491 (876)
T ss_dssp HHTC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTT--HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred HhCC-CCHHHHHHHHHHHHHHHHhCchhcccHHH--HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 9987 78999999999999998753321 111 123567777777764 8899999999999986411
Q ss_pred ----CCchhhHHHhhchHHHHHHHhccCC---hh----------------------------------------------
Q 010080 242 ----PKPATELIKVDGLLDAILRHLKRAD---EE---------------------------------------------- 268 (518)
Q Consensus 242 ----~~~~~~~i~~~~~l~~L~~lL~~~d---~~---------------------------------------------- 268 (518)
....... ...++|.|..++...+ ..
T Consensus 492 ~~~~~~~l~~~--~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 569 (876)
T 1qgr_A 492 EEPATYCLSSS--FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQ 569 (876)
T ss_dssp CCCCCCSSTTT--HHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred ccccchhhhHh--HHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 0001111 1356666666655321 12
Q ss_pred ----------HHHHHHHHHHHhhcCCc-hhhhHHHhcCchHHHHHHHccCCC--ccchhhhhhhhhhhhcCCCcccceee
Q 010080 269 ----------LTTEVAWVVVYLSALSN-VATSLLVKSGVLQLLVERLATSNS--LQLLIPVLRSLGNLVAGDSSTISDVL 335 (518)
Q Consensus 269 ----------v~~~a~~~L~~L~~~~~-~~~~~~~~~g~~~~Lv~lL~~~~~--~~v~~~al~~L~nl~~~~~~~~~~~i 335 (518)
++..+++++..++..-. ....... ..+++.++..+. +.+ ..++..++.+++.++..........+
T Consensus 570 ~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~l~~~l~-~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 647 (876)
T 1qgr_A 570 STSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-DVVMASLLRMFQ-STAGSGGVQEDALMAVSTLVEVLGGEFLKYM 647 (876)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-HHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-HHHHHHHHHHHH-hccCCCCccHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444555555554322 1211111 235666677664 332 36788999999999875443333333
Q ss_pred ccCCCchhhhHHHHHHHhccC-hhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--CChhHHHHHHHHHHH
Q 010080 336 VPGHGITDQVIAVLVKCLKSE-HRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGN 412 (518)
Q Consensus 336 ~~G~~~~~~~l~~L~~lL~~~-~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~eA~~aL~n 412 (518)
..+++.+...+.+. ++.++..|+++++.|+....+.+...+. .+++.|+..|.+ .+.+++..+++++++
T Consensus 648 -------~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~ 719 (876)
T 1qgr_A 648 -------EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGD 719 (876)
T ss_dssp -------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHH
Confidence 25889999999876 7899999999999998643333444333 478889999977 467899999999999
Q ss_pred hcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC----CH-------HHHHHHHHHHHHHHccCCCC---------
Q 010080 413 LCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA----DI-------EAARLGLQFMELVLRGMPNH--------- 472 (518)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~----d~-------~~~~~~l~~l~~il~~~~~~--------- 472 (518)
++... |+.. ..++ ..+++.|...+... |+ .+...+++++..++......
T Consensus 720 i~~~~---g~~~------~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~ 788 (876)
T 1qgr_A 720 IALAI---GGEF------KKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVM 788 (876)
T ss_dssp HHHHH---GGGG------GGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGG
T ss_pred HHHHh---chhH------HHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHH
Confidence 97631 1110 0111 23566667666543 22 56677788888777643221
Q ss_pred cchhHHHhhchHHHHHHHhcCC--CHHHHHHHHHHHHhh
Q 010080 473 EGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDKY 509 (518)
Q Consensus 473 ~~~~~ie~~ggl~~l~~L~~~~--~~~i~~~a~~il~~~ 509 (518)
.....+.. .+..+..+..++ +..++..|...+..+
T Consensus 789 ~~~~~~~~--i~~~l~~~~~~~~~~~~vr~~a~~~l~~l 825 (876)
T 1qgr_A 789 LVQPRVEF--ILSFIDHIAGDEDHTDGVVACAAGLIGDL 825 (876)
T ss_dssp GSGGGHHH--HHHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 01111111 123344444555 788988887766653
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.49 E-value=1.1e-12 Score=135.39 Aligned_cols=387 Identities=12% Similarity=0.101 Sum_probs=259.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCChHHHH
Q 010080 84 LKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGKQEETK 162 (518)
Q Consensus 84 l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~-~~~~~~eA~~~L~nia~~~~~~~~ 162 (518)
|.+++....++|.+.+.+|...|.++-. .. ..+.++.|+++|...+ +...+.-|+-.|.|+.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~-~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAV-EN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHh-hC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 4556667778999999999999988432 10 1345677888887643 445555588899998754311100
Q ss_pred -------Hhc------CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC-hhhHHHHHhcCChhHHHhhhCCC--ChhHH
Q 010080 163 -------ALL------PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPN--KGSTV 226 (518)
Q Consensus 163 -------~v~------~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~ll~~~--~~~~~ 226 (518)
..+ ..-..++..|.+ ++..+ .+++.+++.|+... +.. .-.+.+|.|+..+.++ +..++
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r 147 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGT-ETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMK 147 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCC-CCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHH
Confidence 001 133456777776 56678 89999999998631 110 1135788888888887 88999
Q ss_pred HHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC--ChhHHHHHHHHHHHhhcCCchhhh-HHHhcCchHHHHHH
Q 010080 227 RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSNVATS-LLVKSGVLQLLVER 303 (518)
Q Consensus 227 ~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~-~~~~~g~~~~Lv~l 303 (518)
..++++|..++....+...... ...+++.+..++.++ +++++..+++++.++...-.+... .....-+++.+...
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhhHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 9999999999964212111112 246888899999887 789999999999987643221111 01111135555555
Q ss_pred HccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHH------
Q 010080 304 LATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE------ 377 (518)
Q Consensus 304 L~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~------ 377 (518)
+ .+.+..++..++++++.++..........+. .++++.+...+.+.++.++..|++.+++++.....
T Consensus 226 ~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 298 (462)
T 1ibr_B 226 T-QCPDTRVRVAALQNLVKIMSLYYQYMETYMG------PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298 (462)
T ss_dssp T-TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT------TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5 4678889999999999998765443333331 15888888888888899999999999998753210
Q ss_pred ---------------HHHHHHhCCCHHHHHHHhcCC-------ChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q 010080 378 ---------------HKQLIHSSEALALLLHLLSTS-------PFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLV 435 (518)
Q Consensus 378 ---------------~~~~li~~~~i~~Li~lL~~~-------~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~ 435 (518)
..+..+ ..++|.++..|... +..+|+.|+.+|..++... +. ...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~----~~-----~~~---- 364 (462)
T 1ibr_B 299 EAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC----ED-----DIV---- 364 (462)
T ss_dssp CTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT----TT-----THH----
T ss_pred cccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc----cH-----HHH----
Confidence 111111 23677788888542 3578999999999997642 11 111
Q ss_pred hcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 010080 436 GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFG 511 (518)
Q Consensus 436 ~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~ 511 (518)
..+++.+...|.++++.++..++.++..+..++........+ ...++.|..+..++++.++..|...+.+|..
T Consensus 365 -~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 365 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 135677788888999999999999999998754311111111 3467778888889999999999998888754
No 53
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.49 E-value=7e-13 Score=122.06 Aligned_cols=186 Identities=21% Similarity=0.250 Sum_probs=157.7
Q ss_pred CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
+.++.|+.+|.+ ++..++..|+++|+.+.. ..+++.|+.++.+++..++..++++|..+..
T Consensus 19 ~~~~~L~~~L~~-~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQD-DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 378999999987 799999999999998754 2568999999999999999999999999851
Q ss_pred hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080 246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 325 (518)
...++.|..+|.++++.++..++++|..+.. .+.++.|+.+| .++++.++..++++|+++..
T Consensus 80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC
Confidence 2567899999999999999999999999863 24678889988 58889999999999999831
Q ss_pred CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080 326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 405 (518)
Q Consensus 326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e 405 (518)
...++.|..++.++++.+|..|+++|+.+.. + .+++.|..+++++++.||..
T Consensus 142 -----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~ 193 (211)
T 3ltm_A 142 -----------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKV 193 (211)
T ss_dssp -----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHH
T ss_pred -----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHH
Confidence 1478999999999999999999999999942 2 26778999999999999999
Q ss_pred HHHHHHHhcCC
Q 010080 406 VAYVLGNLCVS 416 (518)
Q Consensus 406 A~~aL~nl~~~ 416 (518)
|.++|.++...
T Consensus 194 A~~aL~~~~~~ 204 (211)
T 3ltm_A 194 AVNYLETHKSF 204 (211)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHhcCCC
Confidence 99999999764
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.48 E-value=1.2e-12 Score=119.53 Aligned_cols=183 Identities=22% Similarity=0.272 Sum_probs=157.3
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
..+.++.+|.+ +++.++..|+++|+.+.. .+.++.|+.++.+++..++..++++|..+..
T Consensus 15 ~~~~~i~~L~~-~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 15 KVEMYIKNLQD-DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred chHHHHHHhcC-CCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 67899999988 799999999999998764 2468999999999999999999999998841
Q ss_pred hHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcC
Q 010080 247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAG 326 (518)
Q Consensus 247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~ 326 (518)
...++.|..+|.++++.++..++|+|..+.. ...++.|+.+| .++++.++..++++|+++..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence 2567899999999999999999999999863 24678888888 57888999999999999842
Q ss_pred CCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHH
Q 010080 327 DSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEV 406 (518)
Q Consensus 327 ~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA 406 (518)
...++.|..++.++++.+|..|+++|+++ +.++ .++.|..++.++++.||..|
T Consensus 137 ----------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~--~~~~---------~~~~L~~~l~d~~~~vr~~A 189 (201)
T 3ltj_A 137 ----------------ERAVEPLIKALKDEDGWVRQSAADALGEI--GGER---------VRAAMEKLAETGTGFARKVA 189 (201)
T ss_dssp ----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH--CSHH---------HHHHHHHHHHHCCHHHHHHH
T ss_pred ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--Cchh---------HHHHHHHHHhCCCHHHHHHH
Confidence 14889999999999999999999999999 3322 67788899999999999999
Q ss_pred HHHHHHhc
Q 010080 407 AYVLGNLC 414 (518)
Q Consensus 407 ~~aL~nl~ 414 (518)
.++|.++-
T Consensus 190 ~~aL~~l~ 197 (201)
T 3ltj_A 190 VNYLETHK 197 (201)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHH
Confidence 99999874
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.47 E-value=5.7e-13 Score=137.48 Aligned_cols=353 Identities=13% Similarity=0.131 Sum_probs=235.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCC----------cHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHH
Q 010080 94 GAMQKRVNALRELRRLLSRFEFP----------PIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKA 163 (518)
Q Consensus 94 ~~~~~~~~a~~~lr~lls~~~~~----------~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~ 163 (518)
.++..+..|...|++++.....+ .+..-....+-..|+..|..++ +.. ..++.++..|+...... ..
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~~ia~~~~~~-~~ 125 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVAGIACAEIPV-NQ 125 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHHHHHHHHGGG-TC
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHHHHHHHhccc-cc
Confidence 36888999999999988653100 0111122345556777787654 335 66899999998542110 11
Q ss_pred hcCChHHHHHhhcCCC-CHHHHHHHHHHHHhhhCCC-hhhHHHHHhcCChhHHHhhhCCC--ChhHHHHHHHHHHHhhcC
Q 010080 164 LLPALPLLIAHLGEKS-SSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPN--KGSTVRTAAWALSNLIKG 239 (518)
Q Consensus 164 v~~~v~~Lv~lL~~~~-~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nL~~~ 239 (518)
.-+.+|.|+..+.+.+ ++.+++.|+++|+.++.+. +..-.... ..+++.++.++.++ +..++..+++++.++...
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2258999999998732 8899999999999998643 22111111 23677788888877 789999999999997643
Q ss_pred CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhh
Q 010080 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRS 319 (518)
Q Consensus 240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~ 319 (518)
.......... ..-+++.+...+.+.+++++..++++|..++..........+..++++.++..+ .+.+..++..++.+
T Consensus 205 ~~~~~~~~~~-~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~ 282 (462)
T 1ibr_B 205 TKANFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEF 282 (462)
T ss_dssp THHHHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHH
T ss_pred HHHhhhhhHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHH
Confidence 1100000011 122477777788888999999999999999975443332222226677777777 46778889999999
Q ss_pred hhhhhcCC--------C---------cccceeeccCCCchhhhHHHHHHHhccC-------hhhhHHHHHHHHHHhccCC
Q 010080 320 LGNLVAGD--------S---------STISDVLVPGHGITDQVIAVLVKCLKSE-------HRVLKKEAAWVLSNIAAGS 375 (518)
Q Consensus 320 L~nl~~~~--------~---------~~~~~~i~~G~~~~~~~l~~L~~lL~~~-------~~~i~~~a~~~Lsnl~~~~ 375 (518)
++.++... + .....++.. .-..++|.++..+... ++.+|..|+.+|+.++...
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~ 359 (462)
T 1ibr_B 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG---ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (462)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHH---HHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccccccCCCccchhHHHHHH---HhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc
Confidence 88887542 0 000001100 0134677777777532 3589999999999998654
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHH
Q 010080 376 VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAA 455 (518)
Q Consensus 376 ~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~ 455 (518)
++ .++. .++|.+...+++.+..+|..|+++|+.++.+.. ++. +... -..+++.++.+|.++++.+.
T Consensus 360 ~~---~~~~-~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-----~~~----~~~~-l~~~~~~l~~~l~d~~~~Vr 425 (462)
T 1ibr_B 360 ED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-----PSQ----LKPL-VIQAMPTLIELMKDPSVVVR 425 (462)
T ss_dssp TT---THHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-----TTT----TCTT-TTTHHHHHHHGGGCSCHHHH
T ss_pred cH---HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc-----HHH----HHHH-HHHHHHHHHHHhcCCCHHHH
Confidence 32 2222 367888888999999999999999999987532 110 1111 14689999999999999999
Q ss_pred HHHHHHHHHHHccC
Q 010080 456 RLGLQFMELVLRGM 469 (518)
Q Consensus 456 ~~~l~~l~~il~~~ 469 (518)
..++++|.++....
T Consensus 426 ~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 426 DTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.46 E-value=2.1e-12 Score=144.33 Aligned_cols=367 Identities=11% Similarity=0.138 Sum_probs=239.7
Q ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCC-ChHHHHHHHHHHHHHhcCC
Q 010080 81 VEELKSAVAYHGKG--AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGS-PDEQLLEAAWCLTNIAAGK 157 (518)
Q Consensus 81 ~~~l~~~l~~~~s~--~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~-~~~~~~eA~~~L~nia~~~ 157 (518)
++.+.+.+ .++ ++..+..|+..|..+...-. +..-.-.-..+++.+...+..++ +...+..|+++|.+++..-
T Consensus 130 l~~l~~~l---~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 130 IPQLVANV---TNPNSTEHMKESTLEAIGYICQDID-PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp HHHHHHHH---HCTTCCHHHHHHHHHHHHHHHHHSC-HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHhcC-HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34444444 466 88889999999998765421 11100111456777888887653 4566677999999988543
Q ss_pred hHHHH--Hhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHH
Q 010080 158 QEETK--ALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALS 234 (518)
Q Consensus 158 ~~~~~--~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 234 (518)
..... ... ..++.+..++.+ ++.+++..++++|+.++...+..-...+...+++.++..+.+.+..++..+++++.
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 32211 011 146667777765 68999999999999998754433222333467888888888888999999999999
Q ss_pred HhhcCC---------------CC-CchhhHH--HhhchHHHHHHHhcc-------CChhHHHHHHHHHHHhhcCCchhhh
Q 010080 235 NLIKGP---------------DP-KPATELI--KVDGLLDAILRHLKR-------ADEELTTEVAWVVVYLSALSNVATS 289 (518)
Q Consensus 235 nL~~~~---------------~~-~~~~~~i--~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~L~~~~~~~~~ 289 (518)
++++.. .| ....... ....++|.++..+.. ++..++..+..+|..++....+
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--- 361 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--- 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---
Confidence 988531 00 1111111 124677888888753 2346888999999988863221
Q ss_pred HHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC-cccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHH
Q 010080 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL 368 (518)
Q Consensus 290 ~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~L 368 (518)
.++ ..+++.+...+ .+.++.++..+++++|.++.+.. ......+ ..++|.++..+.++++.+|..|+|++
T Consensus 362 ~~~-~~~l~~l~~~l-~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-------~~~l~~l~~~l~d~~~~vr~~a~~~l 432 (876)
T 1qgr_A 362 DIV-PHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-------IQAMPTLIELMKDPSVVVRDTAAWTV 432 (876)
T ss_dssp GGH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-------HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHc-cCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-------HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 122 24566666766 46788899999999999997754 2222222 35899999999999999999999999
Q ss_pred HHhccCCHHHH--HHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC-----CC---CchhHHHHHHHHHhcC
Q 010080 369 SNIAAGSVEHK--QLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG-----EG---KPKLIQEHLVSLVGRG 438 (518)
Q Consensus 369 snl~~~~~~~~--~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~-----~~---~~~~~~~~~~~l~~~g 438 (518)
++++...+... ...+ ..+++.|+..|.+. ..++..|+|+|.+++...... .+ .++.+..+. ..
T Consensus 433 ~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~ 505 (876)
T 1qgr_A 433 GRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF-----EL 505 (876)
T ss_dssp HHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH-----HH
T ss_pred HHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH-----HH
Confidence 99987543211 0111 13677888888775 889999999999998531000 00 000000111 23
Q ss_pred chHHHHHhhccC---CHHHHHHHHHHHHHHHccCCC
Q 010080 439 CLSGFIDLVRSA---DIEAARLGLQFMELVLRGMPN 471 (518)
Q Consensus 439 ~i~~L~~lL~~~---d~~~~~~~l~~l~~il~~~~~ 471 (518)
+++.|..++... +..+...+++++..+....+.
T Consensus 506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence 677888888764 346777888999988876543
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.46 E-value=2.4e-11 Score=130.22 Aligned_cols=353 Identities=13% Similarity=0.105 Sum_probs=244.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHH
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEET 161 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~ 161 (518)
.++.+.++ +++...+.+++..+-.+...+.+- +.+.+-.++++.+++ ....+-+..++.+++..+++..
T Consensus 37 ~~ir~~l~---~~~~~~k~~~l~kli~~~~~G~d~-------~~~~~~vik~~~s~~-~~~Krl~Yl~~~~~~~~~~e~~ 105 (618)
T 1w63_A 37 AAIRSSFR---EEDNTYRCRNVAKLLYMHMLGYPA-------HFGQLECLKLIASQK-FTDKRIGYLGAMLLLDERQDVH 105 (618)
T ss_dssp HHHHHHHT---TTCTTTHHHHHHHHHHHHHTTCCC-------GGGHHHHHHHHHSSS-HHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHhh---CCCHHHHHHHHHHHHHHHHcCCCC-------cchHHHHHHHHcCCc-hHHHHHHHHHHHHHhCCCcHHH
Confidence 45555554 566677888887777765554322 335566667777654 4444556678888887665422
Q ss_pred HHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCC
Q 010080 162 KALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPD 241 (518)
Q Consensus 162 ~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 241 (518)
+-++..|.+-|.+ +++.++..|+++|++|.. ++. ....++.+.+++.++++.+++.|++++.++++..
T Consensus 106 ---~l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~--~~~-----~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~- 173 (618)
T 1w63_A 106 ---LLMTNCIKNDLNH-STQFVQGLALCTLGCMGS--SEM-----CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV- 173 (618)
T ss_dssp ---HHHHHHHHHHHSC-SSSHHHHHHHHHHHHHCC--HHH-----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-
T ss_pred ---HHHHHHHHHhcCC-CCHhHHHHHHHHHHhcCC--HHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-
Confidence 2457788888887 789999999999999984 332 1346788899999999999999999999999753
Q ss_pred CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc--------------C
Q 010080 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT--------------S 307 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~--------------~ 307 (518)
| +.+ .++++.+..+|.+.|+.|+..|+++|..++..+++....+ ...++.++.+|.+ .
T Consensus 174 p----~~v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~ 245 (618)
T 1w63_A 174 P----ELM--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGI 245 (618)
T ss_dssp G----GGG--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSS
T ss_pred h----HHH--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCC
Confidence 2 232 3788899999999999999999999999997544322222 2567878877642 2
Q ss_pred CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc------cChhhhHHHHHHHHHHhccCCHHHHHH
Q 010080 308 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK------SEHRVLKKEAAWVLSNIAAGSVEHKQL 381 (518)
Q Consensus 308 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~------~~~~~i~~~a~~~Lsnl~~~~~~~~~~ 381 (518)
.++-.+..++++|+.++..++.... .+++.|..++. +.+..+..+|++++.++.. .+....
T Consensus 246 ~~~~~q~~il~~L~~l~~~~~~~~~-----------~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~- 312 (618)
T 1w63_A 246 SDPFLQVRILRLLRILGRNDDDSSE-----------AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV- 312 (618)
T ss_dssp SCHHHHHHHHHHHHHHTTTCHHHHH-----------TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH-
T ss_pred CCChHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH-
Confidence 3555667788999999876543222 24455555542 3456899999999999854 332222
Q ss_pred HHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHH
Q 010080 382 IHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQF 461 (518)
Q Consensus 382 li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~ 461 (518)
.+++.|..+|.+.++.+|.-|+.+|..++.. . ..++ ......++..|.++|..+...+++.
T Consensus 313 ----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~------~--------p~~~-~~~~~~i~~~l~d~d~~Ir~~alel 373 (618)
T 1w63_A 313 ----LAINILGRFLLNNDKNIRYVALTSLLKTVQT------D--------HNAV-QRHRSTIVDCLKDLDVSIKRRAMEL 373 (618)
T ss_dssp ----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH------H--------HHHH-GGGHHHHHHGGGSSCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh------C--------HHHH-HHHHHHHHHHccCCChhHHHHHHHH
Confidence 2567888899999999999999999999752 1 1222 2356788899999999999999999
Q ss_pred HHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHH
Q 010080 462 MELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLV 506 (518)
Q Consensus 462 l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il 506 (518)
|..+... .+ ....+ +.|.....+.+.+++..+...|
T Consensus 374 L~~l~~~--~n-v~~iv------~eL~~~l~~~d~e~r~~~v~~I 409 (618)
T 1w63_A 374 SFALVNG--NN-IRGMM------KELLYFLDSCEPEFKADCASGI 409 (618)
T ss_dssp HHHHCCS--SS-THHHH------HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHccc--cc-HHHHH------HHHHHHHHhCCHHHHHHHHHHH
Confidence 9988642 11 12222 3333333446667776654444
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.44 E-value=1.6e-11 Score=142.32 Aligned_cols=396 Identities=10% Similarity=0.122 Sum_probs=263.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHH
Q 010080 83 ELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETK 162 (518)
Q Consensus 83 ~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~ 162 (518)
.+.++++.+.+.|.+.+..|+..|.+.+...... .+.-....+++.|++.|.+. ++..+..|+.+|.+++.+.+. .
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~-~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~--~ 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIK-LDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE--Y 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCS-CCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH--H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccC-CChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH--H
Confidence 4667788888999999999999999977654211 11112245788899999743 466667799999999976544 2
Q ss_pred HhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH-----HHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHh
Q 010080 163 ALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR-----NVLLSQGALPPLARMML-PNKGSTVRTAAWALSNL 236 (518)
Q Consensus 163 ~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r-----~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL 236 (518)
.+-..++.++..|.+ ++..+|..|+.+|+.++....... ..-.-..++|.|+..+. +++..++..++.+|..+
T Consensus 83 ~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 222467888888877 677899999999999985432210 01112346889999998 57889999999999999
Q ss_pred hcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhh
Q 010080 237 IKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPV 316 (518)
Q Consensus 237 ~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~a 316 (518)
+........ .. ...+++.+...+.++++.++..++.+|..++...++.. -..+++.++..|....+..++..+
T Consensus 162 ~~~~~~~l~-~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 162 LSRQGGLLV-NF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp HHHTCSSCT-TT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HHHhHhHHH-HH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccCCchhHHHHH
Confidence 853211111 11 24678888888988899999999999999997543221 234678888888654445788889
Q ss_pred hhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc
Q 010080 317 LRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS 396 (518)
Q Consensus 317 l~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~ 396 (518)
+.+++.++..........+ ..++|.+...+.+.++.+|..++++++.++...++.....+. .++|.++..+.
T Consensus 235 ~~~l~~l~~~~~~~~~~~l-------~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~ 306 (1230)
T 1u6g_C 235 IQCIAAISRQAGHRIGEYL-------EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLT 306 (1230)
T ss_dssp HHHHHHHHHHSSGGGTTSC-------TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCC
T ss_pred HHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhC
Confidence 9999999876544333333 369999999999888999999999999998754332222221 24444444442
Q ss_pred C-------------------------------------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc
Q 010080 397 T-------------------------------------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 439 (518)
Q Consensus 397 ~-------------------------------------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~ 439 (518)
. ...++|+.|+.++..++... |+. ....+ ..+
T Consensus 307 ~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~------~~~----~~~~~-~~l 375 (1230)
T 1u6g_C 307 YDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR------HEM----LPEFY-KTV 375 (1230)
T ss_dssp CC------------------------------------CTTHHHHHHHHHHHHHHTTC------CTT----HHHHH-TTT
T ss_pred CCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhc------hhH----HHHHH-HHH
Confidence 1 12357889999999988631 111 11111 346
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCc-------------ch-hHHHh--hchHHHHHHHhcCCCHHHHHHHH
Q 010080 440 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHE-------------GT-KLVER--EDGIDAMERFQFHENEDLRNMAN 503 (518)
Q Consensus 440 i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~-------------~~-~~ie~--~ggl~~l~~L~~~~~~~i~~~a~ 503 (518)
++.|...+.+.+..+...++.++..++....... .+ ..+.. ...++.+.....++++.++..+.
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~ 455 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence 7888888888888899889998888876422100 00 11111 11234444556778888877776
Q ss_pred HHHHhh
Q 010080 504 GLVDKY 509 (518)
Q Consensus 504 ~il~~~ 509 (518)
..+..+
T Consensus 456 ~~L~~l 461 (1230)
T 1u6g_C 456 NMLTEL 461 (1230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.41 E-value=6.7e-12 Score=115.43 Aligned_cols=188 Identities=20% Similarity=0.214 Sum_probs=155.7
Q ss_pred cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHH
Q 010080 124 AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRN 203 (518)
Q Consensus 124 ~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~ 203 (518)
.+.++.|+.+|.+++ ...+..|+++|..+... +++|.|+.+|.+ +++.++..|+++|+++..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~~---------~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGDE---------RAVEPLIKALKD-EDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCCG---------GGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCc---------cHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-------
Confidence 457899999998654 66777899999987641 468999999987 789999999999999863
Q ss_pred HHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC
Q 010080 204 VLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL 283 (518)
Q Consensus 204 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 283 (518)
.+.++.|+.++.++++.++..++|+|..+.. ...+|.|..++.++++.++..++++|..+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence 2468899999999999999999999999842 2567899999999999999999999999853
Q ss_pred CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHH
Q 010080 284 SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKE 363 (518)
Q Consensus 284 ~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~ 363 (518)
...++.|..++ .++++.++..++.+|+.+.. ..+++.|..++.++++.+|..
T Consensus 142 ----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-----------------~~~~~~L~~~l~d~~~~vr~~ 193 (211)
T 3ltm_A 142 ----------ERAVEPLIKAL-KDEDGWVRQSAADALGEIGG-----------------ERVRAAMEKLAETGTGFARKV 193 (211)
T ss_dssp ----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS-----------------HHHHHHHHHHHHHCCHHHHHH
T ss_pred ----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc-----------------hhHHHHHHHHHhCCCHHHHHH
Confidence 24678888888 57888999999999999831 258899999999999999999
Q ss_pred HHHHHHHhccCC
Q 010080 364 AAWVLSNIAAGS 375 (518)
Q Consensus 364 a~~~Lsnl~~~~ 375 (518)
|.++|.++....
T Consensus 194 A~~aL~~~~~~~ 205 (211)
T 3ltm_A 194 AVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHhcCCCC
Confidence 999999997654
No 60
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.41 E-value=5.3e-11 Score=127.59 Aligned_cols=366 Identities=12% Similarity=0.055 Sum_probs=197.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChH
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALP 169 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~ 169 (518)
.+.+.++..+..|+.++.++.... |. .+ .+.++.+..+|... ++.++..|+++|..++..+++....+...+|
T Consensus 150 ~L~~~~~~VRk~A~~al~~l~~~~--p~---~v-~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~ 222 (618)
T 1w63_A 150 LLKTSNSYLRKKAALCAVHVIRKV--PE---LM-EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHFRKLVP 222 (618)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHC--GG---GG-GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHHHTTHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHC--hH---HH-HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 334667777777777777765543 21 12 25677777777643 3567777999999998766554344446788
Q ss_pred HHHHhhcC--------------CCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC------CCChhHHHHH
Q 010080 170 LLIAHLGE--------------KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML------PNKGSTVRTA 229 (518)
Q Consensus 170 ~Lv~lL~~--------------~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~------~~~~~~~~~a 229 (518)
.|+.+|.+ ..++-.+...+.+|+.++..++...+ ..++.|..++. +.+..+...+
T Consensus 223 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea 297 (618)
T 1w63_A 223 QLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYET 297 (618)
T ss_dssp HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHH
Confidence 88877652 13677788888888888876554322 23333334332 1234555666
Q ss_pred HHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCC
Q 010080 230 AWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNS 309 (518)
Q Consensus 230 ~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~ 309 (518)
++++..+... + ... ..+++.|..++.+.|++++..++++|..++...+. ++ ......++..+ .+++
T Consensus 298 ~~~i~~l~~~----~--~l~--~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~-~~~~~~i~~~l-~d~d 363 (618)
T 1w63_A 298 VLTIMDIKSE----S--GLR--VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AV-QRHRSTIVDCL-KDLD 363 (618)
T ss_dssp HHHHHHSCCC----H--HHH--HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HH-GGGHHHHHHGG-GSSC
T ss_pred HHHHHhcCCC----H--HHH--HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HH-HHHHHHHHHHc-cCCC
Confidence 6666655311 1 111 24455555566656666666666666666542221 11 11233444444 2445
Q ss_pred ccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC---H-HHHHHH---
Q 010080 310 LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS---V-EHKQLI--- 382 (518)
Q Consensus 310 ~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~---~-~~~~~l--- 382 (518)
..++..++.+|..++...+. . .+++.|...+.+.+..++..++.+|+.++... . ..+..+
T Consensus 364 ~~Ir~~alelL~~l~~~~nv--~-----------~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~l 430 (618)
T 1w63_A 364 VSIKRRAMELSFALVNGNNI--R-----------GMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRV 430 (618)
T ss_dssp HHHHHHHHHHHHHHCCSSST--H-----------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcccccH--H-----------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 55555555555555543320 0 24444444554455555555555555555421 0 011111
Q ss_pred -------------------Hh------CCCHHHHHHHhcC--CChhHHHHHHHHHHHhcCCCCCC---CCCchhHHHHHH
Q 010080 383 -------------------HS------SEALALLLHLLST--SPFDIKKEVAYVLGNLCVSPTEG---EGKPKLIQEHLV 432 (518)
Q Consensus 383 -------------------i~------~~~i~~Li~lL~~--~~~~v~~eA~~aL~nl~~~~~~~---~~~~~~~~~~~~ 432 (518)
+. ..+++.|+..+.+ ....+.+.++|+|+..+.....+ +..|..
T Consensus 431 L~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~------ 504 (618)
T 1w63_A 431 LTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQ------ 504 (618)
T ss_dssp HHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCC------
T ss_pred HHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccC------
Confidence 00 0134556666653 23345556889988875311000 000000
Q ss_pred HHHhcCchHHHHHhhc--cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010080 433 SLVGRGCLSGFIDLVR--SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDK 508 (518)
Q Consensus 433 ~l~~~g~i~~L~~lL~--~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~ 508 (518)
.-...+++.|..++. ..++.++..++.++..+....+. ....+ ...|.....+.|.|++++|...+.-
T Consensus 505 -~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l-----~~~L~~~~~~~d~evrdRA~~y~~l 574 (618)
T 1w63_A 505 -VTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRI-----KKVVSIYGSSIDVELQQRAVEYNAL 574 (618)
T ss_dssp -CCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHH-----HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHH-----HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 000113455566665 46788999999999888765443 12222 2235666788999999999876654
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.39 E-value=1.6e-11 Score=112.00 Aligned_cols=183 Identities=17% Similarity=0.226 Sum_probs=155.7
Q ss_pred CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080 209 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 288 (518)
Q Consensus 209 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 288 (518)
+..+.++.+|.+++..++..++++|..+.. ...++.|+.+|.++++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 457889999999999999999999998742 2567889999999999999999999998863
Q ss_pred hHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHH
Q 010080 289 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL 368 (518)
Q Consensus 289 ~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~L 368 (518)
.+.++.|+.+| .++++.++..++++|+++.. ...++.|..++.++++.+|..|+|+|
T Consensus 75 -----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-----------------~~~~~~L~~~l~d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 75 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD-----------------ERAVEPLIKALKDEDWFVRIAAAFAL 131 (201)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-----------------GGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc-----------------HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 25678888888 57888999999999999742 14789999999999999999999999
Q ss_pred HHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc
Q 010080 369 SNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR 448 (518)
Q Consensus 369 snl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~ 448 (518)
+++.. ...++.|..++.+.++.+|..|+++|..+.. + .+++.|..++.
T Consensus 132 ~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~-------------~~~~~L~~~l~ 179 (201)
T 3ltj_A 132 GEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------E-------------RVRAAMEKLAE 179 (201)
T ss_dssp HHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------H-------------HHHHHHHHHHH
T ss_pred HHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------h-------------hHHHHHHHHHh
Confidence 99843 2478899999999999999999999999832 1 15778888999
Q ss_pred cCCHHHHHHHHHHHHHH
Q 010080 449 SADIEAARLGLQFMELV 465 (518)
Q Consensus 449 ~~d~~~~~~~l~~l~~i 465 (518)
++++.+...+.++|..+
T Consensus 180 d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 180 TGTGFARKVAVNYLETH 196 (201)
T ss_dssp HCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999888776
No 62
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.26 E-value=2.5e-10 Score=132.36 Aligned_cols=397 Identities=11% Similarity=0.069 Sum_probs=254.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH----
Q 010080 85 KSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE---- 160 (518)
Q Consensus 85 ~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~---- 160 (518)
..+++.+.+.++..+..|+.++..+...-..+ .+ ..+++.|+..|..++ +..+..|+.+|..++..-...
T Consensus 51 ~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~----~~-~~i~~~Ll~~l~d~~-~~vR~~a~~~L~~i~~~l~~~~~~~ 124 (1230)
T 1u6g_C 51 KMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY----QV-ETIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPASSGS 124 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH----HH-HHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC-----C
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH----HH-HHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCCccccc
Confidence 33455566889999999999999977643221 11 346788888887655 345555889999988433221
Q ss_pred --HHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChh-hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHh
Q 010080 161 --TKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNL 236 (518)
Q Consensus 161 --~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL 236 (518)
..... ..+|.|+..+.++++..+++.|+.+|+.++...+. ...+ ....++.|+..+.+++..++..++.+|..+
T Consensus 125 ~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 125 ALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp CTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11222 57899999997436889999999999999842211 1111 123567788888888899999999999999
Q ss_pred hcCCCCCchhhHHHhhchHHHHHHHhccCC-hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhh
Q 010080 237 IKGPDPKPATELIKVDGLLDAILRHLKRAD-EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIP 315 (518)
Q Consensus 237 ~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~ 315 (518)
+...... . ....+|.++..|...+ ..++..++.++..++...+...... -..+++.++..+. +.+++++..
T Consensus 203 ~~~~~~~----~--~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~-d~~~~vR~~ 274 (1230)
T 1u6g_C 203 VMSCGNI----V--FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCN-VDDDELREY 274 (1230)
T ss_dssp TTTC----------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHS-SCCTTTHHH
T ss_pred HHhcCHH----H--HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhc-CCCHHHHHH
Confidence 9753221 2 2467888888887543 4677778888888886433322211 1467888888884 678889999
Q ss_pred hhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhcc-------------------------------------Chh
Q 010080 316 VLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKS-------------------------------------EHR 358 (518)
Q Consensus 316 al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~-------------------------------------~~~ 358 (518)
++.+++.++..........+ ..++|.++..+.. ..+
T Consensus 275 a~~~l~~l~~~~~~~~~~~l-------~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 347 (1230)
T 1u6g_C 275 CIQAFESFVRRCPKEVYPHV-------STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSW 347 (1230)
T ss_dssp HHHHHHHHHHCTTCCCHHHH-------HHHHHHHTTCCCCC------------------------------------CTT
T ss_pred HHHHHHHHHHHChHHHHHhH-------HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCH
Confidence 99999998865443322222 2355555544421 123
Q ss_pred hhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCC----CCCc------hhHH
Q 010080 359 VLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEG----EGKP------KLIQ 428 (518)
Q Consensus 359 ~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~----~~~~------~~~~ 428 (518)
.+|+.|+.++..++...++....++. .++|.++..+.+.+..+|..|+.++..++...... ++.+ .+ .
T Consensus 348 ~vR~~A~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~ 425 (1230)
T 1u6g_C 348 KVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP-L 425 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH-H
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccch-H
Confidence 57899999999998754443444443 47899999898888999999999888776421000 0000 00 0
Q ss_pred HHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCC--HHHHHHHHHHH
Q 010080 429 EHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHEN--EDLRNMANGLV 506 (518)
Q Consensus 429 ~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~--~~i~~~a~~il 506 (518)
..+..++ ..+++.+...|.+.++.++..++.++..++..++... ...+. ..++.|..+..+++ .+++..+...+
T Consensus 426 ~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l-~~~l~--~ll~~l~~~L~d~~~~~~v~~~a~~~l 501 (1230)
T 1u6g_C 426 TMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGAL-TQHIP--VLVPGIIFSLNDKSSSSNLKIDALSCL 501 (1230)
T ss_dssp HHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTT-GGGHH--HHHHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred HHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhh-HHHHH--HHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 1111111 2356677777999999999889999999988754321 11111 22444555555554 47777776666
Q ss_pred Hhhc
Q 010080 507 DKYF 510 (518)
Q Consensus 507 ~~~f 510 (518)
..++
T Consensus 502 ~~~~ 505 (1230)
T 1u6g_C 502 YVIL 505 (1230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 63
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.18 E-value=6.5e-11 Score=128.25 Aligned_cols=199 Identities=15% Similarity=0.116 Sum_probs=152.0
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHH-hhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA-RMMLPNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
.+.+++..|++ ++++.|..|+|+|+||+. ++..|..++..|++++++ .+|.+++.+++..|+|+|.|||....+..+
T Consensus 35 ~i~Pll~~L~S-~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVLKDLKS-PDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHHHHHSS-SCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHcCC-CCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 34556777887 789999999999999997 789999999999998865 578888999999999999999976444444
Q ss_pred hhHHHhhchHHHHHHHhccCC---------------------hhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHH
Q 010080 246 TELIKVDGLLDAILRHLKRAD---------------------EELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERL 304 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~lL~~~d---------------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL 304 (518)
..+ ...++++.|..++.... .++...++++|.+|+.++++..+.+...+.++.|+..|
T Consensus 113 ~~l-~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 113 VHL-YRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHH-HHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHH-HHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 433 46789999998885311 13456788899999988888888888899999999988
Q ss_pred ccCC--CccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhc
Q 010080 305 ATSN--SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIA 372 (518)
Q Consensus 305 ~~~~--~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~ 372 (518)
.... ..++...|+.+|.+++..++...+.+.+.| ....+..+..+..+.+ ..+..+|++|.|+.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~---~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQ---ETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCC---SSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcc---hHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 5322 346888999999999988877777666543 1223444554444443 45788999999984
No 64
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.11 E-value=3.4e-10 Score=122.59 Aligned_cols=196 Identities=14% Similarity=0.085 Sum_probs=141.0
Q ss_pred HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc--CChHHHHH-hhcCCCCHHHHHHHHHHHHhhhCC-C
Q 010080 123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL--PALPLLIA-HLGEKSSSPVAEQCAWALGNVAGE-G 198 (518)
Q Consensus 123 ~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~--~~v~~Lv~-lL~~~~~~~v~~~a~~~L~nla~d-~ 198 (518)
+..++| +++.|+++++ ..+..|+++|+||+.+ +..+..+. ++|+.++. +|.. ++.+|++.|+|+|+||+.+ +
T Consensus 33 ~~~i~P-ll~~L~S~~~-~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 33 EDKILP-VLKDLKSPDA-KSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HHTTHH-HHHHHSSSCC-SHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSC
T ss_pred hhhHHH-HHHHcCCCCH-HHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcC
Confidence 345566 4567887764 4567799999999974 45555555 67776554 5665 7899999999999999965 5
Q ss_pred hhhHHHHHhcCChhHHHhhhCCC--------------C-------hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHH
Q 010080 199 EEFRNVLLSQGALPPLARMMLPN--------------K-------GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDA 257 (518)
Q Consensus 199 ~~~r~~~~~~g~i~~L~~ll~~~--------------~-------~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~ 257 (518)
.+.++.+...|++++|..++... . ..+..+++++|++||.+.+ ...+.+...+.+|.
T Consensus 109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~--~~~~~v~~~~~l~~ 186 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD--EIHEAVATKQTILR 186 (684)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHTCHHHHH
T ss_pred chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHhcccHHH
Confidence 78999999999999999988521 0 2356678899999997642 23344556788999
Q ss_pred HHHHhccC---ChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHc-cCCCccchhhhhhhhhhhh
Q 010080 258 ILRHLKRA---DEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLA-TSNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 258 L~~lL~~~---d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~-~~~~~~v~~~al~~L~nl~ 324 (518)
|+.+|.+. ..++...++.+|..+++.+.+..+.+.+.|....+.-++. ...+...+..++.+|.|+.
T Consensus 187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 187 LLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 99888643 3589999999999999988888888887764432222221 1223334566777888774
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.11 E-value=1.1e-07 Score=101.55 Aligned_cols=330 Identities=10% Similarity=0.068 Sum_probs=226.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080 81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 160 (518)
Q Consensus 81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~ 160 (518)
+.++.+.+++-.+.+...+.+++..+-.+...+.+- +.+.+-.++++.+++ ...++-+..++.+++.++++.
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~-------s~~~~~vvkl~~s~~-~~~Krl~YL~l~~~~~~~~e~ 108 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDI-------DFGHMEAVNLLSSNR-YTEKQIGYLFISVLVNSNSEL 108 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCC-------CSCHHHHHHGGGCSC-HHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCC-------chhHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCcHH
Confidence 356666665322357888888888777765544322 346777888888765 445455778888888777654
Q ss_pred HHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhh--CCCChhHHHHHHHHHHHhhc
Q 010080 161 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMM--LPNKGSTVRTAAWALSNLIK 238 (518)
Q Consensus 161 ~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~nL~~ 238 (518)
. +-++..|.+=|.+ +++-++..|+.+|++|.. ++.- ...++++.+++ .+.++.+++.|+.++..+++
T Consensus 109 ~---~L~iN~l~kDl~~-~n~~ir~lALr~L~~i~~--~e~~-----~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~ 177 (621)
T 2vgl_A 109 I---RLINNAIKNDLAS-RNPTFMGLALHCIANVGS--REMA-----EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR 177 (621)
T ss_dssp H---HHHHHHHHHHHHS-CCHHHHHHHHHHHHHHCC--HHHH-----HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHhcCC-CCHHHHHHHHHHhhccCC--HHHH-----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3 2346677777776 799999999999999964 3432 24578899999 78899999999999999997
Q ss_pred CCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHH----HHccC--C----
Q 010080 239 GPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVE----RLATS--N---- 308 (518)
Q Consensus 239 ~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~----lL~~~--~---- 308 (518)
.. |. .+...++++.+..+|.+.|+.|+..++.+|..++..++.... ..++.++. ++... +
T Consensus 178 ~~-p~----~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~ 247 (621)
T 2vgl_A 178 TS-PD----LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSRIVTSASTDLQDY 247 (621)
T ss_dssp HC-GG----GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHHHHHHCCSSSCSTT
T ss_pred hC-hh----hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHHHHhCCCCCccch
Confidence 42 22 322248999999999999999999999999999975443221 23444443 33211 1
Q ss_pred ------CccchhhhhhhhhhhhcCCC-cccceeeccCCCchhhhHHHHHHHh---------ccCh--hhhHHHHHHHHHH
Q 010080 309 ------SLQLLIPVLRSLGNLVAGDS-STISDVLVPGHGITDQVIAVLVKCL---------KSEH--RVLKKEAAWVLSN 370 (518)
Q Consensus 309 ------~~~v~~~al~~L~nl~~~~~-~~~~~~i~~G~~~~~~~l~~L~~lL---------~~~~--~~i~~~a~~~Lsn 370 (518)
++-.+...++.++.++..++ .....+. .+++.++..+ .+.+ ..|..+|+.++..
T Consensus 248 ~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--------~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~ 319 (621)
T 2vgl_A 248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--------ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIH 319 (621)
T ss_dssp EETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--------HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--------HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHh
Confidence 33456677888888775432 2111121 2333333322 2223 3899999999999
Q ss_pred hccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc-c
Q 010080 371 IAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR-S 449 (518)
Q Consensus 371 l~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~-~ 449 (518)
+. ..++..+. ++..|..+|.+.++.+|.-|+.+|..++... ..+ ..+ ......++..|. +
T Consensus 320 l~-~~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~----~~~-------~~~--~~~~~~i~~~L~~d 380 (621)
T 2vgl_A 320 HD-SEPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSE----FSH-------EAV--KTHIETVINALKTE 380 (621)
T ss_dssp HC-CCHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT----TTH-------HHH--HTTHHHHHHHHTTC
T ss_pred cC-CcHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhcc----CcH-------HHH--HHHHHHHHHHhccC
Confidence 86 34444433 4567888899999999999999999998642 111 112 235677888888 8
Q ss_pred CCHHHHHHHHHHHHHHH
Q 010080 450 ADIEAARLGLQFMELVL 466 (518)
Q Consensus 450 ~d~~~~~~~l~~l~~il 466 (518)
+|+.+...+|+.+..+.
T Consensus 381 ~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 381 RDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHhHHHHHHHHHHHHc
Confidence 99999999999988885
No 66
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.91 E-value=7.1e-08 Score=86.39 Aligned_cols=226 Identities=17% Similarity=0.098 Sum_probs=170.5
Q ss_pred hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccc
Q 010080 252 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI 331 (518)
Q Consensus 252 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~ 331 (518)
.+.+..|..+|+..|+.++..++.+|..+...-+.......-..+++.++.++ .+.+..+...|++||+.+..+.+-.-
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL-SQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHcCCCCCH
Confidence 35788899999999999999999999999976545555555567789999988 68899999999999999998876433
Q ss_pred ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHH
Q 010080 332 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLG 411 (518)
Q Consensus 332 ~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~ 411 (518)
..+. .+...|..++.+++.-++.+|+-.++-+---++ . .+++..+..++++.+..+|..|..++.
T Consensus 111 ~~y~--------Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~--~-----~~V~~~l~sLl~Skd~~vK~agl~~L~ 175 (265)
T 3b2a_A 111 KTFL--------KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED--S-----KLVRTYINELVVSPDLYTKVAGFCLFL 175 (265)
T ss_dssp HHHH--------HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--C-----HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHH--------HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--h-----HHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 3332 367788888998899999999999998832221 1 125667888889999999999999999
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHh
Q 010080 412 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQ 491 (518)
Q Consensus 412 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~ 491 (518)
|++..+. .|+. -.+++.-+-++|++.|+.++..+|.++..|+...--+ ....+-.+.+.....|.
T Consensus 176 eia~~S~----D~~i---------~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~--~~~~~~~~~~~~v~~l~ 240 (265)
T 3b2a_A 176 NMLNSSA----DSGH---------LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE--NVKIELLKISRIVDGLV 240 (265)
T ss_dssp HHGGGCS----SCCC---------GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS--CCHHHHHHHHHHHHHGG
T ss_pred HhhcccC----CHHH---------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH--hHHHHHHHHHHHHHHHH
Confidence 9988642 2221 2356778889999999999999999999999753211 11112223344455666
Q ss_pred -cCCCHHHHHHHHHHHHh
Q 010080 492 -FHENEDLRNMANGLVDK 508 (518)
Q Consensus 492 -~~~~~~i~~~a~~il~~ 508 (518)
-...|.++.+|..+-+.
T Consensus 241 ~~~~~~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 241 YREGAPIIRLKAKKVSDL 258 (265)
T ss_dssp GCSSCHHHHHHHHHHHHH
T ss_pred HhcCChhHHHHHHHHHHH
Confidence 66889999999776654
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.91 E-value=3e-07 Score=98.19 Aligned_cols=323 Identities=11% Similarity=0.120 Sum_probs=210.9
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCC
Q 010080 88 VAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPA 167 (518)
Q Consensus 88 l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~ 167 (518)
++.++++|.+.+.-+--.+..+... ++. .++- ++..+..=|++++ +..+--|+.+|+++.. ++... ..
T Consensus 80 vkl~~s~~~~~Krl~YL~l~~~~~~--~~e--~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~---~l 147 (621)
T 2vgl_A 80 VNLLSSNRYTEKQIGYLFISVLVNS--NSE--LIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE---AF 147 (621)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHSCCC--CHH--HHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH---HH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHccC--CcH--HHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH---HH
Confidence 3344688888877777777664332 232 1211 3555666666544 4444458888888864 33222 35
Q ss_pred hHHHHHhh--cCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 168 LPLLIAHL--GEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 168 v~~Lv~lL--~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
+|.+.++| .+ .++-|+..|+.++.++...+++. +...+.++.|..+|.++++.++.+|+.++..++... +.
T Consensus 148 ~~~v~~~l~~~d-~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~-~~-- 220 (621)
T 2vgl_A 148 AGEIPKILVAGD-TMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN-PE-- 220 (621)
T ss_dssp TTHHHHHHHCSS-SCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-HH--
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC-hH--
Confidence 67778888 55 78999999999999998755543 222478999999999889999999999999999642 21
Q ss_pred hhHHHhhchHHHHH----HHhccC-------------ChhHHHHHHHHHHHhhcCC-chhhhHHHhcCchHHHHHHHccC
Q 010080 246 TELIKVDGLLDAIL----RHLKRA-------------DEELTTEVAWVVVYLSALS-NVATSLLVKSGVLQLLVERLATS 307 (518)
Q Consensus 246 ~~~i~~~~~l~~L~----~lL~~~-------------d~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~~~~Lv~lL~~~ 307 (518)
. -...+|.++ +++..+ ++..+...+..|..++..+ ++..+.+. +++..++..+...
T Consensus 221 --~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~ 294 (621)
T 2vgl_A 221 --E--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEP 294 (621)
T ss_dssp --H--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSC
T ss_pred --H--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccC
Confidence 1 124445444 444321 5778888888888887532 22233232 2344444333111
Q ss_pred C--------C--ccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHH
Q 010080 308 N--------S--LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE 377 (518)
Q Consensus 308 ~--------~--~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~ 377 (518)
+ + ..+.-.+.+++..+.... .++ ..++..|..+|.++++.+|.-|+.+|..++...+.
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~-----~~~-------~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~ 362 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDSEP-----NLL-------VRACNQLGQFLQHRETNLRYLALESMCTLASSEFS 362 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCCCH-----HHH-------HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccccccchHHHHHHHHHHHHHhcCCcH-----HHH-------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc
Confidence 1 2 256666777777764211 112 24778889999989999999999999999876532
Q ss_pred HHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHH
Q 010080 378 HKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAAR 456 (518)
Q Consensus 378 ~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~ 456 (518)
...+ . ...+.++..|. +.|..++..|+..|..++.. ..+..+ +..|...+...|.+++.
T Consensus 363 -~~~~-~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~------------~Nv~~I-----v~eL~~yl~~~d~~~~~ 422 (621)
T 2vgl_A 363 -HEAV-K-THIETVINALKTERDVSVRQRAVDLLYAMCDR------------SNAQQI-----VAEMLSYLETADYSIRE 422 (621)
T ss_dssp -HHHH-H-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH------------HHHHHH-----HHHHHHHHHHCCHHHHH
T ss_pred -HHHH-H-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh------------hhHHHH-----HHHHHHHHHhcCHHHHH
Confidence 1122 2 35678888888 99999999999999999762 334443 55667777777887777
Q ss_pred HHHHHHHHHHc
Q 010080 457 LGLQFMELVLR 467 (518)
Q Consensus 457 ~~l~~l~~il~ 467 (518)
.+...+..+..
T Consensus 423 ~~v~~I~~la~ 433 (621)
T 2vgl_A 423 EIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665553
No 68
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.79 E-value=1.1e-07 Score=93.32 Aligned_cols=304 Identities=11% Similarity=0.134 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHh
Q 010080 95 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAH 174 (518)
Q Consensus 95 ~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~l 174 (518)
|+....+++..+-.++..+..-+-.+ -+.+.+..+.++.+++ ..+++-....+.+++.... .++=++..|.+=
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~e--~t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~----e~iLv~Nsl~kD 112 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTTE--ATEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAE----DVIIVTSSLTKD 112 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHH--HHHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSS----CGGGGHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchhH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHH----HHHHHHHHHHhh
Confidence 66666677777777666554322211 1346677778888765 4454546667777775522 233567888888
Q ss_pred hcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhch
Q 010080 175 LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGL 254 (518)
Q Consensus 175 L~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~ 254 (518)
+++ +++-++-.|+.+|++|... +.-+ .+.+++-+.|.+.++.+++.|+.+...|+... ++.+ .++
T Consensus 113 l~~-~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-----pe~v--~~~ 177 (355)
T 3tjz_B 113 MTG-KEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-----FDVV--KRW 177 (355)
T ss_dssp HHS-SCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-----HHHH--HTT
T ss_pred cCC-CcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-----HHHH--HHH
Confidence 887 7899999999999999863 2222 24566778888999999999999999998542 3444 489
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCC--CccchhhhhhhhhhhhcCC-Cccc
Q 010080 255 LDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSN--SLQLLIPVLRSLGNLVAGD-SSTI 331 (518)
Q Consensus 255 l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~--~~~v~~~al~~L~nl~~~~-~~~~ 331 (518)
++.+-.++.+.++.++..|+.+|..+...+. ..+..++..+.... ++-.....++.++.+..++ +...
T Consensus 178 ~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~ 248 (355)
T 3tjz_B 178 VNEAQEAASSDNIMVQYHALGLLYHVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD 248 (355)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH
Confidence 9999999999999999999999999986432 13455566554221 2333445667776766655 2221
Q ss_pred ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHH
Q 010080 332 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLG 411 (518)
Q Consensus 332 ~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~ 411 (518)
..+++.+..+|+|.++.|..||+++|..+...... +. ..++..|..+|.++++.+|-.|+..|.
T Consensus 249 -----------~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~ 312 (355)
T 3tjz_B 249 -----------SPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLN 312 (355)
T ss_dssp -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred -----------HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 24677888889999999999999999988552221 22 235667778888999999999999998
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHH
Q 010080 412 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQ 460 (518)
Q Consensus 412 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~ 460 (518)
.++.. .|+-+ ..+-.-+.+++.++|..+...|+.
T Consensus 313 ~l~~~------~P~~v---------~~~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 313 KVAMK------HPSAV---------TACNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp -------------------------------------------------
T ss_pred HHHHH------CcHHH---------HHHHHHHHHHccCCcHhHHHHHHH
Confidence 88763 23211 124556778888888877665533
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.74 E-value=9.8e-07 Score=95.95 Aligned_cols=274 Identities=13% Similarity=0.124 Sum_probs=188.6
Q ss_pred HHHHHHHhcC--CCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCC-------CHHHHHHHHHHHHhhhCC
Q 010080 127 IPVLVQCLAF--GSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKS-------SSPVAEQCAWALGNVAGE 197 (518)
Q Consensus 127 ip~Lv~~L~~--~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~-------~~~v~~~a~~~L~nla~d 197 (518)
+..|-.+|.. .+.+..+..|+.+|+.+..|..+ .++..|...|.+.+ ++.++..|+-.||-+...
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G 467 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG 467 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC
Confidence 4555555542 23344556699999999887653 13566777776522 267888999999987543
Q ss_pred ChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHH
Q 010080 198 GEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWV 276 (518)
Q Consensus 198 ~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~ 276 (518)
+. +. .+++.|..++..++..+...++++|.-+.-|..+ ..++..|++.+. ..++.++..++.+
T Consensus 468 S~--~e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn---------~~ai~~LL~~~~e~~~e~vrR~aalg 531 (963)
T 4ady_A 468 SA--NI-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK---------PEAIHDMFTYSQETQHGNITRGLAVG 531 (963)
T ss_dssp CC--CH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC---------HHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CC--CH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC---------HHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 31 11 1356677777766666667899999877555421 234455555543 4567899999999
Q ss_pred HHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHh-cc
Q 010080 277 VVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCL-KS 355 (518)
Q Consensus 277 L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL-~~ 355 (518)
|+.+.-+.++ .++.+++.|..+.++.++..+..++|--..|+.. ..++..|+..+ .+
T Consensus 532 LGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------------~~aIq~LL~~~~~d 589 (963)
T 4ady_A 532 LALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------------NSAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------------HHHHHHHHHHHHHC
T ss_pred HHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------------HHHHHHHHHHhccC
Confidence 9988876553 3556666676567777777777777755444432 23566454444 56
Q ss_pred ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh-cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH
Q 010080 356 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL-STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSL 434 (518)
Q Consensus 356 ~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l 434 (518)
.+..+|..|..+|+.|..+.++ .++.++.+| ++.++.+|..|+++|+.++.+ +|.
T Consensus 590 ~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aG------n~~--------- 645 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAG------KGL--------- 645 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS------SCC---------
T ss_pred CcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccC------CCc---------
Confidence 6678999999999999887742 566677655 678999999999999999863 221
Q ss_pred HhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080 435 VGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 470 (518)
Q Consensus 435 ~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~ 470 (518)
..++..|..++.++|..+...|+.+|..|.....
T Consensus 646 --~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 646 --QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred --HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 1246678888899999999999999999976543
No 70
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.72 E-value=4.5e-07 Score=98.61 Aligned_cols=237 Identities=17% Similarity=0.157 Sum_probs=163.7
Q ss_pred CHHHHHHHhcCCC-------ChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCC
Q 010080 126 AIPVLVQCLAFGS-------PDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEG 198 (518)
Q Consensus 126 ~ip~Lv~~L~~~~-------~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~ 198 (518)
++..|...|..++ .+.++..|+..|+-+..|+.+. .+++.|...|.. ++..+++.|+.+||-+-..+
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-----ev~e~L~~~L~d-d~~~~~~~AalALGli~vGT 503 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-----EVYEALKEVLYN-DSATSGEAAALGMGLCMLGT 503 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-----HHHHHHHHHHHT-CCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHhc-CCHHHHHHHHHHHhhhhccc
Confidence 3566777776443 2445556888888877554311 135566777766 55677889999999873322
Q ss_pred hhhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHH
Q 010080 199 EEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWV 276 (518)
Q Consensus 199 ~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~ 276 (518)
.. . .++..|+..+. ..+..+++.++.+|..+..+. ...++.+++.|. +.++-++..++.+
T Consensus 504 gn-~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~-----------~e~~~~li~~L~~~~dp~vRygaa~a 565 (963)
T 4ady_A 504 GK-P------EAIHDMFTYSQETQHGNITRGLAVGLALINYGR-----------QELADDLITKMLASDESLLRYGGAFT 565 (963)
T ss_dssp CC-H------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC-----------GGGGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CC-H------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC-----------hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 11 1 12455555443 457889999999999987663 134456666665 5677888888777
Q ss_pred HH--HhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHH-Hh
Q 010080 277 VV--YLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVK-CL 353 (518)
Q Consensus 277 L~--~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~-lL 353 (518)
++ |...++. .+++.|++.+..+.+..++..|.-+||.|..++++ .++.++. ++
T Consensus 566 lglAyaGTGn~---------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------------~v~rlv~~L~ 621 (963)
T 4ady_A 566 IALAYAGTGNN---------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------------TVPRIVQLLS 621 (963)
T ss_dssp HHHHTTTSCCH---------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------------SHHHHTTTGG
T ss_pred HHHHhcCCCCH---------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------------HHHHHHHHHH
Confidence 65 4444443 23455555555567778999999999999877652 3344555 44
Q ss_pred ccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080 354 KSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 417 (518)
Q Consensus 354 ~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 417 (518)
.+.++.+|..|+++++.+++|++.. .++..|..++++.+..|+..|+.+|+.+..+.
T Consensus 622 ~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 622 KSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred hcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 6788999999999999999987521 15667888889999999999999999997753
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.59 E-value=8e-06 Score=70.18 Aligned_cols=213 Identities=14% Similarity=0.196 Sum_probs=166.6
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
.+..++.+|.. +-..|+..|+..+.+++..-++....+ +..|+.++. +....+......++..+++-+
T Consensus 33 ~l~~lI~~LDD-DlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~----- 101 (253)
T 2db0_A 33 VLKKLIELLDD-DLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK----- 101 (253)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhcc-HHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC-----
Confidence 78889999987 667899999999999999877765543 345666655 667888888999999999642
Q ss_pred hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhc
Q 010080 246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVA 325 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~ 325 (518)
++.+ .+.+|.+..-..-+|+.+..+..++|..++..++... .+++..+..++. +++..-+..|+..|+.+..
T Consensus 102 Pe~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smlt-skd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 102 PELV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLS-SKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHHH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTS-CSSHHHHHHHHHHHHTCCT
T ss_pred HHHH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhc-CCChHHHHHHHHHHHHHhc
Confidence 3343 5899999999999999999999999999998666443 355677888884 6776556677777776643
Q ss_pred CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080 326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 405 (518)
Q Consensus 326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e 405 (518)
.+...+. -++|.|..+|...+.-+|..|.-+|.+++.-++..+..+++ -++-+.+.+..+++.
T Consensus 174 ---n~~~yv~--------PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~ 236 (253)
T 2db0_A 174 ---NSFKYVN--------PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKT 236 (253)
T ss_dssp ---TTHHHHG--------GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHH
T ss_pred ---cCccccC--------cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHH
Confidence 3334333 48999999999999999999999999999999886554433 456678888889999
Q ss_pred HHHHHHHhcC
Q 010080 406 VAYVLGNLCV 415 (518)
Q Consensus 406 A~~aL~nl~~ 415 (518)
+..+|+.++.
T Consensus 237 V~egL~rl~l 246 (253)
T 2db0_A 237 VKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888765
No 72
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.54 E-value=6.5e-09 Score=87.60 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=93.2
Q ss_pred hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccc
Q 010080 252 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTI 331 (518)
Q Consensus 252 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~ 331 (518)
.+.++.+..+|.++++.++..++|+|..+.. . .++.|+.+| .++++.++..++++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------
Confidence 4678889999999999999999999987643 1 257888888 47889999999999999742
Q ss_pred ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHH
Q 010080 332 SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLG 411 (518)
Q Consensus 332 ~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~ 411 (518)
...++.|..+|.++++.+|..|+|+|+++. .+ ..++.|+.++++.+..|+..|+++|.
T Consensus 72 -----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 -----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 247899999999999999999999999985 22 25788999999999999999999987
Q ss_pred Hh
Q 010080 412 NL 413 (518)
Q Consensus 412 nl 413 (518)
++
T Consensus 130 ~i 131 (131)
T 1te4_A 130 TH 131 (131)
T ss_dssp GC
T ss_pred hC
Confidence 54
No 73
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.51 E-value=5.5e-08 Score=81.84 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=90.9
Q ss_pred cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080 294 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 373 (518)
Q Consensus 294 ~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~ 373 (518)
...++.++.+| +++++.++..|+++|+++. + ..++.|..+|.++++.+|..|+|+|+++..
T Consensus 11 ~~~~~~l~~~L-~~~~~~vR~~A~~~L~~~~--~----------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~ 71 (131)
T 1te4_A 11 SSGLVPRGSHM-ADENKWVRRDVSTALSRMG--D----------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD 71 (131)
T ss_dssp ----------C-CSSCCCSSSSCCSSTTSCS--S----------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS
T ss_pred cccHHHHHHHh-cCCCHHHHHHHHHHHHHhC--c----------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 45677888888 5788999999999999763 1 135889999999999999999999999852
Q ss_pred CCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHH
Q 010080 374 GSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIE 453 (518)
Q Consensus 374 ~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~ 453 (518)
+ ..++.|+..|.+.++.||..|+|+|.++.. + .+++.|..+|.++|+.
T Consensus 72 --~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~-------------~a~~~L~~~l~d~~~~ 119 (131)
T 1te4_A 72 --E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------E-------------RVRAAMEKLAETGTGF 119 (131)
T ss_dssp --H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------H-------------HHHHHHHHHTTSCCTH
T ss_pred --H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------H-------------HHHHHHHHHHhCCCHH
Confidence 2 247889999999999999999999999842 1 2478899999999999
Q ss_pred HHHHHHHHHHH
Q 010080 454 AARLGLQFMEL 464 (518)
Q Consensus 454 ~~~~~l~~l~~ 464 (518)
+...+..+|..
T Consensus 120 vr~~A~~aL~~ 130 (131)
T 1te4_A 120 ARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHHh
Confidence 99888887754
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.49 E-value=7.1e-07 Score=87.46 Aligned_cols=274 Identities=11% Similarity=0.060 Sum_probs=156.8
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhh
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATE 247 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 247 (518)
.+..++++.+ ++..++.-+--.+.+++...++. + =++..|.+=++++++-++-.|..+|+++... .
T Consensus 70 f~~v~kl~~s-~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~---- 135 (355)
T 3tjz_B 70 FFAMTKLFQS-NDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---T---- 135 (355)
T ss_dssp HHHHHGGGGC-CCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---T----
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---H----
Confidence 3445567776 78899998888888888753221 1 2456677778889999999999999999743 1
Q ss_pred HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCC
Q 010080 248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGD 327 (518)
Q Consensus 248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~ 327 (518)
+ ...+.+.+-+.|.+.++-|+..|+.+...|....++..+ +.+..+-+++ .+.++.++..|+.++..+...+
T Consensus 136 m--~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 136 M--LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp T--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 2 246778899999999999999999999999976654432 5788888888 4678888888999998887543
Q ss_pred CcccceeeccCCCchhhhHHHHHHHhccC---hhhhHHHHHHHHHHhccCC-HHHHHHHHhCCCHHHHHHHhcCCChhHH
Q 010080 328 SSTISDVLVPGHGITDQVIAVLVKCLKSE---HRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLLHLLSTSPFDIK 403 (518)
Q Consensus 328 ~~~~~~~i~~G~~~~~~~l~~L~~lL~~~---~~~i~~~a~~~Lsnl~~~~-~~~~~~li~~~~i~~Li~lL~~~~~~v~ 403 (518)
. ..+..|+.-+... ++..+-.....++.++.++ ++ ....+++.|...|++.+..|.
T Consensus 208 ~---------------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVv 267 (355)
T 3tjz_B 208 R---------------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVV 267 (355)
T ss_dssp H---------------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHH
T ss_pred h---------------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHH
Confidence 1 2444555544432 2333333333333333332 12 123467788888999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhch
Q 010080 404 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDG 483 (518)
Q Consensus 404 ~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~gg 483 (518)
.||+.+|..+...+ ..+. ..++..|-.+|.++|+.++-.+|+.|..+....+ ..+..+.
T Consensus 268 yEa~k~I~~l~~~~--------------~~~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-----~~v~~~n- 326 (355)
T 3tjz_B 268 YEAASAIVNLPGCS--------------AKEL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-----SAVTACN- 326 (355)
T ss_dssp HHHHHHHTC--------------------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------
T ss_pred HHHHHHHHhccCCC--------------HHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-----HHHHHHH-
Confidence 99999999985421 0111 2356677788889999999999999988876543 3344332
Q ss_pred HHHHHHHhcCCCHHHHHHHHHH
Q 010080 484 IDAMERFQFHENEDLRNMANGL 505 (518)
Q Consensus 484 l~~l~~L~~~~~~~i~~~a~~i 505 (518)
.-|+.|..++|..|...|.--
T Consensus 327 -~~ie~li~d~n~sI~t~Aitt 347 (355)
T 3tjz_B 327 -LDLENLVTDANRSIATLAITT 347 (355)
T ss_dssp ----------------------
T ss_pred -HHHHHHccCCcHhHHHHHHHH
Confidence 357888999999999888543
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.49 E-value=1e-06 Score=82.44 Aligned_cols=184 Identities=15% Similarity=0.161 Sum_probs=139.1
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhhHH
Q 010080 213 PLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATSLL 291 (518)
Q Consensus 213 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~ 291 (518)
.+...+.+.+...++.++..|..++.+. +...... ...+++.|..++. +.+..++..++.++..|+..-...+...
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~--~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGE--YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCC--CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCC--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4667778889999999999999998762 1111111 1367888999995 8899999999999999996422222221
Q ss_pred HhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHh
Q 010080 292 VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNI 371 (518)
Q Consensus 292 ~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl 371 (518)
-..+++.++..+. +.+..++..+..+|.+++.... + ..+++.+...+.+.++.+|.+++..|+.+
T Consensus 96 -~~~ilp~ll~~l~-d~~~~vr~~a~~aL~~~~~~~~------~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 96 -ASACVPSLLEKFK-EKKPNVVTALREAIDAIYASTS------L-------EAQQESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp -HHHHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTSC------H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcCC------H-------HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 2346888888884 6788899999999999986432 1 24889999999999999999999999996
Q ss_pred ccC-CHHH-HHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 372 AAG-SVEH-KQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 372 ~~~-~~~~-~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
... .++. ....+. .++|.|..+|.+.+.+||..|..+++.++.
T Consensus 161 l~~~~~~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 161 LTRTQPTALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HTTCCGGGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 543 3332 122223 489999999999999999999999999864
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.38 E-value=6.6e-06 Score=77.19 Aligned_cols=192 Identities=11% Similarity=0.054 Sum_probs=137.7
Q ss_pred HhhhCCCChhHHHHHHHHHHH-hhcCCCCCchhhHHHhhchHHHHHHHh-ccCChhHHHHHHHHHHHhhcCCc-hhhhHH
Q 010080 215 ARMMLPNKGSTVRTAAWALSN-LIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVYLSALSN-VATSLL 291 (518)
Q Consensus 215 ~~ll~~~~~~~~~~a~~~L~n-L~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~-~~~~~~ 291 (518)
...+.+.+..-+..++-.|.. ++.+. ++.......-..++..|.+.+ .+.+..++..++.+|+.|+.+-. ..+..-
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 445678889999999999999 88552 222100000135677888888 68888999999999999996432 222201
Q ss_pred HhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccce-eeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHH
Q 010080 292 VKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISD-VLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSN 370 (518)
Q Consensus 292 ~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~-~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsn 370 (518)
.-.-+++.+++.+. +....++..+..++-.++...+..... .+ ..+++.|...|.+.++.+|.+++.+|+.
T Consensus 101 y~~~llp~ll~~l~-dkk~~V~~aa~~al~~i~~~~~~~~~~~~l-------~~ll~~l~~~l~~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 101 YVSLVFTPLLDRTK-EKKPSVIEAIRKALLTICKYYDPLASSGRN-------EDMLKDILEHMKHKTPQIRMECTQLFNA 172 (249)
T ss_dssp HHHHHHHHHHHGGG-CCCHHHHHHHHHHHHHHHHHSCTTCTTCTT-------HHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHccccccCCcH-------HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 11236888898884 667778888888888888654321111 02 2488999999999999999999999998
Q ss_pred hccCCH---HHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcC
Q 010080 371 IAAGSV---EHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 371 l~~~~~---~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~ 415 (518)
++.... ......+...++|.|..+|.+.+..||..|..+++.++.
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 875433 444445534699999999999999999999999988853
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.37 E-value=2.7e-06 Score=79.46 Aligned_cols=181 Identities=14% Similarity=0.155 Sum_probs=131.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CCh
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PAL 168 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v 168 (518)
.+.+.+...+..|+..|..++.....-....+ ..+++.|...|..+.+..++..|+.++..++.+-.......+ ..+
T Consensus 23 ~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~il 100 (242)
T 2qk2_A 23 KLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACV 100 (242)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33588999999999999998876221100001 245777888885234455666799999999953222222333 589
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCc-hhh
Q 010080 169 PLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKP-ATE 247 (518)
Q Consensus 169 ~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~ 247 (518)
|.++..+.+ .+..+++.|..+|.+++...+ .. .++|.|...+++.++.++..++..|..+.....|.. ...
T Consensus 101 p~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 101 PSLLEKFKE-KKPNVVTALREAIDAIYASTS-LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHHHHGGGC-CCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 999999987 789999999999999987432 21 257788888888899999999999999654432221 112
Q ss_pred HHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 248 LIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 248 ~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
. ...++|.|+.++.+.+.+++..+.-++..++.
T Consensus 173 ~--l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 173 L--LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp H--HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 24789999999999999999999999988885
No 78
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.33 E-value=6.9e-06 Score=73.66 Aligned_cols=185 Identities=16% Similarity=0.173 Sum_probs=142.4
Q ss_pred cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080 294 SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 373 (518)
Q Consensus 294 ~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~ 373 (518)
.+.+..|..+| +..++.++..++.+|+.+...-+......+ -..+++.++.++.+.+..+.-.|+.++.-|..
T Consensus 32 e~~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~------~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 32 KRALFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMV------LERHLDVFINALSQENEKVTIKALRALGYLVK 104 (265)
T ss_dssp HHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHH------HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHH------HHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 35678888888 578889999999999999987544333222 13689999999999999999999999999998
Q ss_pred CC---HHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC
Q 010080 374 GS---VEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA 450 (518)
Q Consensus 374 ~~---~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~ 450 (518)
+. ++.... +...|.+++++++.-++.+|+..++-+-.. ++ ..+++..+.+++.+.
T Consensus 105 ~vpL~~~~y~K-----l~~aL~dlik~~~~il~~eaae~Lgklkv~------~~-----------~~~V~~~l~sLl~Sk 162 (265)
T 3b2a_A 105 DVPMGSKTFLK-----AAKTLVSLLESPDDMMRIETIDVLSKLQPL------ED-----------SKLVRTYINELVVSP 162 (265)
T ss_dssp TCCBCHHHHHH-----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBS------CC-----------CHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHH-----HHHHHHHHhcCCCchHHHHHHHHhCcCCcc------cc-----------hHHHHHHHHHHHhCC
Confidence 74 343333 455789999999999999999999998221 11 113567788899999
Q ss_pred CHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080 451 DIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 512 (518)
Q Consensus 451 d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~ 512 (518)
|++++..++.++.+|...-.+... ++ +.++-+-.+..++|+.+.++|..+++..++.
T Consensus 163 d~~vK~agl~~L~eia~~S~D~~i---~~--~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 163 DLYTKVAGFCLFLNMLNSSADSGH---LT--LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SHHHHHHHHHHHHHHGGGCSSCCC---GG--GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred ChhHHHHHHHHHHHhhcccCCHHH---HH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999865443211 11 2234477778999999999999999998765
No 79
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.33 E-value=0.00013 Score=73.15 Aligned_cols=320 Identities=14% Similarity=0.106 Sum_probs=188.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCC-cHHHH-HHcCCHHH-HHHHhcCCCChHHHHH-HHHHHHHHhcCC
Q 010080 82 EELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFP-PIETA-LKAGAIPV-LVQCLAFGSPDEQLLE-AAWCLTNIAAGK 157 (518)
Q Consensus 82 ~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~-~~~~~-i~~g~ip~-Lv~~L~~~~~~~~~~e-A~~~L~nia~~~ 157 (518)
..+..++. ...+.+..-..+.-+..++...+.. ..-.+ .+..-.+. +...+...+ +..... |..+++.++...
T Consensus 80 ~~~l~lL~--~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~d-d~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 80 IPLIHLLS--TSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGD-FQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp HHHHHHHH--SCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSS-HHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHh--hcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhccc-chHHHHHHHHHHHHHhccC
Confidence 34555555 3455666777778888888764311 22222 33322221 222222222 223233 555555555333
Q ss_pred hHHHHHhcCChH--HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcC--ChhHHHhhhCC-------------
Q 010080 158 QEETKALLPALP--LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQG--ALPPLARMMLP------------- 220 (518)
Q Consensus 158 ~~~~~~v~~~v~--~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g--~i~~L~~ll~~------------- 220 (518)
....+.+-..+. .++..|.+.++.+.+..|+.+|..+.. .+++|..+.+.+ .+|+++.++..
T Consensus 157 ~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~ 235 (480)
T 1ho8_A 157 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 235 (480)
T ss_dssp TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred CccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence 322222212223 466666653345667789999999988 789999887654 36777554331
Q ss_pred -C---ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchH--HHHHHHhc-cCChhHHHHHHHHHHHhhcCCc----hhhh
Q 010080 221 -N---KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLL--DAILRHLK-RADEELTTEVAWVVVYLSALSN----VATS 289 (518)
Q Consensus 221 -~---~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l--~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~----~~~~ 289 (518)
+ ...++..++.|++-|+..+ ....++ ...++. +.|+.+++ +..+.|..-++.+|.|+....+ ....
T Consensus 236 ~~~~~~~Ql~Y~~ll~iWlLSF~~--~~~~~l-~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 236 NSNHLGIQLQYHSLLLIWLLTFNP--VFANEL-VQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSH--HHHHHH-HTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHcCH--HHHHHH-HhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1 2566788899999998652 233333 233332 55666666 4557899999999999997542 1222
Q ss_pred -HHHhcCchHHHHHHHcc--CCCccchhhhhhhhhhhh--------cC--------------CCccc---------ceee
Q 010080 290 -LLVKSGVLQLLVERLAT--SNSLQLLIPVLRSLGNLV--------AG--------------DSSTI---------SDVL 335 (518)
Q Consensus 290 -~~~~~g~~~~Lv~lL~~--~~~~~v~~~al~~L~nl~--------~~--------------~~~~~---------~~~i 335 (518)
.++..++ .+++..|.. -.++++.. -+..|.... +. ++..+ ..+-
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~e-dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQ-DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHH-HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 2333344 445555542 12333322 122221111 00 01110 1111
Q ss_pred ccCCCchhhhHHHHHHHhcc----------ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHH
Q 010080 336 VPGHGITDQVIAVLVKCLKS----------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKE 405 (518)
Q Consensus 336 ~~G~~~~~~~l~~L~~lL~~----------~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~e 405 (518)
+. +..++..|+.+|.+ .++.+..-||.=|+.++...|.-+..+-+.|+=..++++|.+.|++||++
T Consensus 391 e~----~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~ 466 (480)
T 1ho8_A 391 KD----NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYE 466 (480)
T ss_dssp SG----GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHH
T ss_pred hc----chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence 11 34678899999973 46788999999999999988877777777899999999999999999999
Q ss_pred HHHHHHHhc
Q 010080 406 VAYVLGNLC 414 (518)
Q Consensus 406 A~~aL~nl~ 414 (518)
|+.|+.-+.
T Consensus 467 AL~avQklm 475 (480)
T 1ho8_A 467 ALKATQAII 475 (480)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987664
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.6e-06 Score=80.01 Aligned_cols=200 Identities=11% Similarity=0.053 Sum_probs=139.9
Q ss_pred HHHHHhccCChhHHHHHHHHHHH-hhcCCchhhhHHHh-cCchHHHHHHHccCCCccchhhhhhhhhhhhcCCC-cccc-
Q 010080 257 AILRHLKRADEELTTEVAWVVVY-LSALSNVATSLLVK-SGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS-STIS- 332 (518)
Q Consensus 257 ~L~~lL~~~d~~v~~~a~~~L~~-L~~~~~~~~~~~~~-~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~-~~~~- 332 (518)
.+...+.+.+-.-+..++-.|.. ++.+.+.....-.+ ..++..|...+....+..++..|+.+|+.++.+-. ....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35566778888888999999998 87543322100001 24466777777446778889999999999996543 2222
Q ss_pred eeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHH-HhCCCHHHHHHHhcCCChhHHHHHHHHHH
Q 010080 333 DVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLI-HSSEALALLLHLLSTSPFDIKKEVAYVLG 411 (518)
Q Consensus 333 ~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~l-i~~~~i~~Li~lL~~~~~~v~~eA~~aL~ 411 (518)
... ..++|.++..+.+.++.++..+..++-+++...+.....- ++ .+++.|+..|++.++.+|.+++.+|.
T Consensus 100 ~y~-------~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 100 DYV-------SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFN 171 (249)
T ss_dssp HHH-------HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 222 2489999999999889999999999988876331110000 00 26778899999999999999999999
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCC
Q 010080 412 NLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPN 471 (518)
Q Consensus 412 nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~ 471 (518)
.++.... ..| ++....+...+++.|..++...++++...+.+++..+.+..++
T Consensus 172 ~~~~~~~---~~~----~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 172 ASMKEEK---DGY----STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHCC---SCS----HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHcC---Ccc----hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 9986421 112 2222333357899999999999999999999999999876544
No 81
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.18 E-value=3.9e-05 Score=76.96 Aligned_cols=235 Identities=15% Similarity=0.098 Sum_probs=151.2
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC----ChHHHHHhhc----------------CCCCHHHHHHHH
Q 010080 129 VLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP----ALPLLIAHLG----------------EKSSSPVAEQCA 188 (518)
Q Consensus 129 ~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~----~v~~Lv~lL~----------------~~~~~~v~~~a~ 188 (518)
.++..|...+....+.-++.+|..+... ++.+..+.. .+|.++..+. +....+++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 4555565432233345588888888764 345555542 3666654332 112478899999
Q ss_pred HHHHhhhCCChhhHHHHHhcCCh--hHHHhhhC-CCChhHHHHHHHHHHHhhcCCCCCch----hhHHHhhchHHHHHHH
Q 010080 189 WALGNVAGEGEEFRNVLLSQGAL--PPLARMML-PNKGSTVRTAAWALSNLIKGPDPKPA----TELIKVDGLLDAILRH 261 (518)
Q Consensus 189 ~~L~nla~d~~~~r~~~~~~g~i--~~L~~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~----~~~i~~~~~l~~L~~l 261 (518)
.|++-++. +++..+.+...++. +.|+.+++ +....+.|.++.+|.|+.... ++.. .+++...++++ ++..
T Consensus 250 l~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~-~~~~~~~~~~~~~~~~~l~-~l~~ 326 (480)
T 1ho8_A 250 LLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTR-VKQHKKVIKQLLLLGNALP-TVQS 326 (480)
T ss_dssp HHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSS-STTHHHHHHHHHHHHCHHH-HHHH
T ss_pred HHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhccc-chhhhhHHHHHHHHccchH-HHHH
Confidence 99999998 45566667666643 55666666 458999999999999999643 2111 22333345555 4444
Q ss_pred hc---cCChhHHHHHHHHHHHhhc---------------------CCchhhh---------HHH--hcCchHHHHHHHcc
Q 010080 262 LK---RADEELTTEVAWVVVYLSA---------------------LSNVATS---------LLV--KSGVLQLLVERLAT 306 (518)
Q Consensus 262 L~---~~d~~v~~~a~~~L~~L~~---------------------~~~~~~~---------~~~--~~g~~~~Lv~lL~~ 306 (518)
|. ..|+++..+.-+....|.. .++.+.. .+. +..+++.|+++|.+
T Consensus 327 L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~ 406 (480)
T 1ho8_A 327 LSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQA 406 (480)
T ss_dssp HHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHH
T ss_pred HhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhh
Confidence 44 5677777665544332221 1222221 111 12467889999952
Q ss_pred ---------CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc
Q 010080 307 ---------SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA 373 (518)
Q Consensus 307 ---------~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~ 373 (518)
+.++.++.-||.=||.++...+.....+- +.|+-..++.+|.|+++.||++|..++.-+..
T Consensus 407 ~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~------~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 407 KVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLD------KTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHH------HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred hccccccccCCCcceEEeecccHHHHHHHCcchhHHHH------HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 23677888899999999988876655443 34688999999999999999999999987643
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.13 E-value=0.00058 Score=76.92 Aligned_cols=338 Identities=13% Similarity=0.078 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhc---------------CCCChHHHHHHHHHHHHHhcCCh--H
Q 010080 97 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA---------------FGSPDEQLLEAAWCLTNIAAGKQ--E 159 (518)
Q Consensus 97 ~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~---------------~~~~~~~~~eA~~~L~nia~~~~--~ 159 (518)
+....++.++..++.... -|.. ....++|.+.. |. ..+.+.....|+.+|..+..... +
T Consensus 204 ~~~~~al~~l~~~~~~~~-ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~ 279 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIG-YTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN 279 (971)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred hHHHHHHHHHHHHHhhCC-cCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence 567778888887766311 1222 34566777776 41 01223443458999999986432 1
Q ss_pred HHHHhcCChHHHHHhh-------cCCCC---HHHHHHHHHHHHhhhCCChh-hH-----------HHHHhcCChhHHHhh
Q 010080 160 ETKALLPALPLLIAHL-------GEKSS---SPVAEQCAWALGNVAGEGEE-FR-----------NVLLSQGALPPLARM 217 (518)
Q Consensus 160 ~~~~v~~~v~~Lv~lL-------~~~~~---~~v~~~a~~~L~nla~d~~~-~r-----------~~~~~~g~i~~L~~l 217 (518)
....+...+|.++.+. .. .+ .+.....+..+..++..... +. ..+ ...++.|+.+
T Consensus 280 ~~~~~~~l~~~~~~~~~~~~~~~~~-~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~ 356 (971)
T 2x1g_F 280 YPKTAFVLIKMFLDSLSEITKTEWK-RENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHC 356 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSS-SSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHH
Confidence 1122223444444422 22 23 25555556666555532111 11 111 1345555555
Q ss_pred hCC-----CChhHHHHHHHHHHHhhcCC-------CCCchhhHHH--hhchHHHHHHHhccCCh---------------h
Q 010080 218 MLP-----NKGSTVRTAAWALSNLIKGP-------DPKPATELIK--VDGLLDAILRHLKRADE---------------E 268 (518)
Q Consensus 218 l~~-----~~~~~~~~a~~~L~nL~~~~-------~~~~~~~~i~--~~~~l~~L~~lL~~~d~---------------~ 268 (518)
... .+..+...+++.++.+++.. ........+. -...++.++..+..+++ +
T Consensus 357 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~ 436 (971)
T 2x1g_F 357 TDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC 436 (971)
T ss_dssp HHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred HcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence 433 36788999999988887510 1111111111 12444555544432211 2
Q ss_pred HHHHHHHHHHHhhcCCc-hhhhHHHhcCchHHHHHHHcc----CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchh
Q 010080 269 LTTEVAWVVVYLSALSN-VATSLLVKSGVLQLLVERLAT----SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITD 343 (518)
Q Consensus 269 v~~~a~~~L~~L~~~~~-~~~~~~~~~g~~~~Lv~lL~~----~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~ 343 (518)
.+..+.-+|..++.... .....+ ++.+-..+.. ..+...+..++.++|.++.+-.......+ .
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l-------~ 504 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQI-------P 504 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHH-------H
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHH-------H
Confidence 34455556655554222 111111 2222233321 24667788999999999877543322222 1
Q ss_pred hhHHHHHHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 010080 344 QVIAVLVKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG 422 (518)
Q Consensus 344 ~~l~~L~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~ 422 (518)
.+++.+..+.. ..++.+|..+||+++.++..-..+.+.+- .+++.|+..| + +.|+..|++++.++|...
T Consensus 505 ~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~----- 574 (971)
T 2x1g_F 505 RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGL-N--SSMSAQATLGLKELCRDC----- 574 (971)
T ss_dssp HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH-----
Confidence 34443333332 24789999999999988742111111111 2456677777 2 789999999999998642
Q ss_pred CchhHHHHHHHHHhcCchHHHHHhhcc--CCHHHHHHHHHHHHHHHccC
Q 010080 423 KPKLIQEHLVSLVGRGCLSGFIDLVRS--ADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 423 ~~~~~~~~~~~l~~~g~i~~L~~lL~~--~d~~~~~~~l~~l~~il~~~ 469 (518)
+ ..+...+ ..++..|..++.. -+.+....+++++..++...
T Consensus 575 -~----~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 575 -Q----LQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp -H----HHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred -H----HhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 1 1111111 2356667777776 35778888888888887654
No 83
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.06 E-value=0.0029 Score=71.11 Aligned_cols=309 Identities=12% Similarity=0.105 Sum_probs=161.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCCC--------CcHHHHHHcCCHHHHHHH-------hcCCCCh--------H
Q 010080 85 KSAVAYHGKGAMQKRVNALRELRRLLSRFEF--------PPIETALKAGAIPVLVQC-------LAFGSPD--------E 141 (518)
Q Consensus 85 ~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~--------~~~~~~i~~g~ip~Lv~~-------L~~~~~~--------~ 141 (518)
..+++.++++|+..+..++..+..+....+. +.+..++ ....|.++++ +..+..+ .
T Consensus 126 ~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l-~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~ 204 (960)
T 1wa5_C 126 SDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVL-DVFTAPFLNLLKTVDEQITANENNKASLNILFD 204 (960)
T ss_dssp HHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4445566778888888899999887654321 1122223 2235544443 3332211 1
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHhc-CChHHHHHhhcCC-----CC---------HHHHHHHHHHHHhhhCCCh-hhHHH
Q 010080 142 QLLEAAWCLTNIAA-GKQEETKALL-PALPLLIAHLGEK-----SS---------SPVAEQCAWALGNVAGEGE-EFRNV 204 (518)
Q Consensus 142 ~~~eA~~~L~nia~-~~~~~~~~v~-~~v~~Lv~lL~~~-----~~---------~~v~~~a~~~L~nla~d~~-~~r~~ 204 (518)
....++.++.++.. +.++.....+ ..++.+..+|... .+ ..++..++.+|..++...+ .++..
T Consensus 205 ~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~ 284 (960)
T 1wa5_C 205 VLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPM 284 (960)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11224555555542 2233222222 3556666666431 01 2466666777777664222 22221
Q ss_pred HHhcCChhHHHhhhC-----CCChhHHHHHHHHHHHhhcCCCCCchhhHHH----hhchH-HHHHHHhcc---------C
Q 010080 205 LLSQGALPPLARMML-----PNKGSTVRTAAWALSNLIKGPDPKPATELIK----VDGLL-DAILRHLKR---------A 265 (518)
Q Consensus 205 ~~~~g~i~~L~~ll~-----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~----~~~~l-~~L~~lL~~---------~ 265 (518)
+ ...++....++. .....+...++-.+..+++.+ .....+. ...++ +.++..+.. +
T Consensus 285 ~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~---~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~ 359 (960)
T 1wa5_C 285 I--NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP---KYFEIFNNESAMNNITEQIILPNVTLREEDVELFED 359 (960)
T ss_dssp H--HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH---HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTT
T ss_pred H--HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH---hHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhc
Confidence 1 123444455443 235677888888888887542 1111211 12333 333344321 1
Q ss_pred Ch--------------hHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc-----CCCccchhhhhhhhhhhhcC
Q 010080 266 DE--------------ELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT-----SNSLQLLIPVLRSLGNLVAG 326 (518)
Q Consensus 266 d~--------------~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-----~~~~~v~~~al~~L~nl~~~ 326 (518)
|+ ..+..+.-+|..++.... +.++ ..+++.+...+.. +.+...+..|+.++|.++.+
T Consensus 360 dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~ 435 (960)
T 1wa5_C 360 DPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAIN 435 (960)
T ss_dssp CHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBS
T ss_pred CHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHH
Confidence 11 234455555655554221 1111 1122333333421 34556778999999999754
Q ss_pred C---Ccccc---eeeccCCCchhhhHH----HHHHHhccC---hhhhHHHHHHHHHHhccCC-HHHHHHHHhCCCHHHHH
Q 010080 327 D---SSTIS---DVLVPGHGITDQVIA----VLVKCLKSE---HRVLKKEAAWVLSNIAAGS-VEHKQLIHSSEALALLL 392 (518)
Q Consensus 327 ~---~~~~~---~~i~~G~~~~~~~l~----~L~~lL~~~---~~~i~~~a~~~Lsnl~~~~-~~~~~~li~~~~i~~Li 392 (518)
. +.... ..+ .+.+ .+...+.++ ++.+|..|||+++.++..- +++. ..+++.++
T Consensus 436 ~~~~~~~~~~~~~~~--------~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l-----~~~l~~l~ 502 (960)
T 1wa5_C 436 GNITNAGVSSTNNLL--------NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL-----IELMPILA 502 (960)
T ss_dssp SCCBTTBCCCBCTTC--------CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH-----HHHHHHHH
T ss_pred hccccCCcccccccc--------cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHH-----HHHHHHHH
Confidence 2 10110 111 1323 344445655 8899999999999997642 2222 12678888
Q ss_pred HHhcCCChhHHHHHHHHHHHhcCC
Q 010080 393 HLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 393 ~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
+.|.+.+..|+..|++||.+++..
T Consensus 503 ~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 503 TFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCCChhHHHHHHHHHHHHHhc
Confidence 899888899999999999999863
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.06 E-value=0.00076 Score=74.37 Aligned_cols=296 Identities=11% Similarity=0.122 Sum_probs=197.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC---hHHHHH
Q 010080 87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK---QEETKA 163 (518)
Q Consensus 87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~---~~~~~~ 163 (518)
+++.+...+......|...+..++....... .+..+++..|...+....+. ..|+.++..+|... +..--.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~ 92 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPY 92 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccc
Confidence 4444445445666788888888776442111 12236777788887643222 34888888888332 222233
Q ss_pred hcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-ChhHHHHHHHHHHHhhcCCCC
Q 010080 164 LLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-KGSTVRTAAWALSNLIKGPDP 242 (518)
Q Consensus 164 v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~~ 242 (518)
+++.+|.++..+.. ....|+..|..++..|+...+...- ..++|.|+..|.+. .......|+.++..|+... |
T Consensus 93 ~~~~~~~~~~~~~d-k~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~ 166 (986)
T 2iw3_A 93 IVQLVPAICTNAGN-KDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-K 166 (986)
T ss_dssp HHTTHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-H
T ss_pred hHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-H
Confidence 34889999999877 6788999988888877653333221 34588888888755 6888999999999999642 2
Q ss_pred CchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc-CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhh
Q 010080 243 KPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA-LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLG 321 (518)
Q Consensus 243 ~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~-~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~ 321 (518)
. .-......++|.+...+.+..++|...+.-++..+|. -++..+ ...+|.|++.+. ++ +-...++..|+
T Consensus 167 ~--~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~-~p--~~~~~~~~~l~ 236 (986)
T 2iw3_A 167 D--QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIA-DP--TEVPETVHLLG 236 (986)
T ss_dssp H--HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHH-CT--THHHHHHHHHT
T ss_pred H--HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhc-Ch--hhhHHHHHHhh
Confidence 1 1112345789999999999999999999999888885 122222 255788898885 44 33455566666
Q ss_pred hhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhcc--CCHHHHHHHHhCCCHHHHHHHhc-CC
Q 010080 322 NLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAA--GSVEHKQLIHSSEALALLLHLLS-TS 398 (518)
Q Consensus 322 nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~--~~~~~~~~li~~~~i~~Li~lL~-~~ 398 (518)
..+.-.. .+...+ .=.+|.|..-|......+++.++-++.|+|. .++.....++. .++|-|-.... ..
T Consensus 237 ~~tfv~~-v~~~~l-------~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~ 307 (986)
T 2iw3_A 237 ATTFVAE-VTPATL-------SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIA 307 (986)
T ss_dssp TCCCCSC-CCHHHH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCC
T ss_pred cCeeEee-ecchhH-------HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccC
Confidence 5432221 111111 1245666666677788899999999999997 46766666665 48888888884 47
Q ss_pred ChhHHHHHHHHHHHh
Q 010080 399 PFDIKKEVAYVLGNL 413 (518)
Q Consensus 399 ~~~v~~eA~~aL~nl 413 (518)
++++|.-|..|+..+
T Consensus 308 ~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 308 DPEAREVTLRALKTL 322 (986)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 899998887777766
No 85
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.02 E-value=0.0015 Score=73.39 Aligned_cols=340 Identities=12% Similarity=0.128 Sum_probs=178.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHH-HHhcCCCChHHHHHHHHHHHHHhcCC---h--HHHHHhcC
Q 010080 93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLV-QCLAFGSPDEQLLEAAWCLTNIAAGK---Q--EETKALLP 166 (518)
Q Consensus 93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv-~~L~~~~~~~~~~eA~~~L~nia~~~---~--~~~~~v~~ 166 (518)
+++++....++.++..+++. -|+..+++.++++.+. .+|.. +.....|+.||+.+.+.. + .....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 45566777788999998874 4567788999999999 99863 445556999999998732 2 11212221
Q ss_pred ChHHHHH---------------hh--cCCCCHHHHHHHHHHHHhhhC-------CChhhHHHHHhcCChhHHHhhhCCCC
Q 010080 167 ALPLLIA---------------HL--GEKSSSPVAEQCAWALGNVAG-------EGEEFRNVLLSQGALPPLARMMLPNK 222 (518)
Q Consensus 167 ~v~~Lv~---------------lL--~~~~~~~v~~~a~~~L~nla~-------d~~~~r~~~~~~g~i~~L~~ll~~~~ 222 (518)
.++.++. .+ ....+.+..+.-+..+..+.. ..+..+..+. .++..|+.+-..++
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~~~~d 357 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLSKIEE 357 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhhCCCc
Confidence 1111111 11 111245555555555544332 1122222211 11223444334456
Q ss_pred hhHHHHHHHHHHHhhcC--CCCCchhhHHH--hhchHHHHHHHhccCC--------------------hhH--HHHHHHH
Q 010080 223 GSTVRTAAWALSNLIKG--PDPKPATELIK--VDGLLDAILRHLKRAD--------------------EEL--TTEVAWV 276 (518)
Q Consensus 223 ~~~~~~a~~~L~nL~~~--~~~~~~~~~i~--~~~~l~~L~~lL~~~d--------------------~~v--~~~a~~~ 276 (518)
.++...+.-.=+.|+.. .++ ....... -...++.+++-+..++ ++. -...=-+
T Consensus 358 ~ei~~~tl~FW~~L~~~l~~e~-~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 358 RELFKTTLDYWHNLVADLFYEP-LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTST-TTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 66655544322223221 111 1111110 1234444444443321 000 0000122
Q ss_pred HHHhhcC-CchhhhHHHhcCchHHHHHHHcc-CCCccchhhhhhhhhhhhcCCCcc-cceeeccCCCchhhhHHHHHHHh
Q 010080 277 VVYLSAL-SNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSST-ISDVLVPGHGITDQVIAVLVKCL 353 (518)
Q Consensus 277 L~~L~~~-~~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~-~~~~i~~G~~~~~~~l~~L~~lL 353 (518)
|.+++.- .++..+. .++.+...+.. ..+...+..+++++|.|+.+.+.. ...++ ..+++.|+.++
T Consensus 437 L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-------~~vi~~Ll~l~ 504 (1023)
T 4hat_C 437 LVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-------VTVIKDLLDLC 504 (1023)
T ss_dssp HHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-------HHHHHHHHHhh
Confidence 3333321 1111111 23334444422 246778899999999999776542 22233 25888888888
Q ss_pred cc-----ChhhhHHHHHHHHHHhccC---CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCch
Q 010080 354 KS-----EHRVLKKEAAWVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPK 425 (518)
Q Consensus 354 ~~-----~~~~i~~~a~~~Lsnl~~~---~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~ 425 (518)
.+ ++..++..+||++|..+.- .++.... ++..|+..|....+.++..|||++.++|..+.
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~------- 572 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCK------- 572 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT-------
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-------
Confidence 64 3445677899999977642 3333222 34456666666778899999999999987421
Q ss_pred hHHHHHHHHHh------cCchH----HHHHhhccCCHHHHHHHHHHHHHHHccCCC
Q 010080 426 LIQEHLVSLVG------RGCLS----GFIDLVRSADIEAARLGLQFMELVLRGMPN 471 (518)
Q Consensus 426 ~~~~~~~~l~~------~g~i~----~L~~lL~~~d~~~~~~~l~~l~~il~~~~~ 471 (518)
..+.. ...++ .+...+..-+++-...+.+++..++...++
T Consensus 573 ------~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 573 ------YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp ------HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred ------HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 22221 01222 333333345667777888888888877654
No 86
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.96 E-value=0.00078 Score=58.03 Aligned_cols=217 Identities=16% Similarity=0.176 Sum_probs=152.7
Q ss_pred HcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhH
Q 010080 123 KAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFR 202 (518)
Q Consensus 123 ~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r 202 (518)
+..++..++.+|+.+- ..+|..|+..+.+++..-++... ..+..|+.++..++...+....+.++|-++...|+..
T Consensus 30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~e---pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYE---PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHH---HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHH---HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 3456777888887543 45778899999999976665433 3566777777766778888888999999998666654
Q ss_pred HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
+. .+|.|..-..-.++.++.+..++|-.+++.. | +. ..++..-+..++.++|..=...++..++-+..
T Consensus 106 ~~-----vVp~lfanyrigd~kikIn~~yaLeeIaran-P----~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 106 KS-----MIPVLFANYRIGDEKTKINVSYALEEIAKAN-P----ML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-H----HH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred Hh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhC-h----HH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 32 4566666666679999999999999999763 2 22 34777888899998886555555555555554
Q ss_pred CCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080 283 LSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 362 (518)
Q Consensus 283 ~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~ 362 (518)
+. ...+ ...+|+|..+| ...+.-++..+.-+|+++++-++... .++...+.=+...+.-+++
T Consensus 174 n~---~~yv--~PfLprL~aLL-~D~deiVRaSaVEtL~~lA~~npklR------------kii~~kl~e~~D~S~lv~~ 235 (253)
T 2db0_A 174 NS---FKYV--NPFLPRIINLL-HDGDEIVRASAVEALVHLATLNDKLR------------KVVIKRLEELNDTSSLVNK 235 (253)
T ss_dssp TT---HHHH--GGGHHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCHHHH------------HHHHHHHHHCCCSCHHHHH
T ss_pred cC---cccc--CcchHHHHHHH-cCcchhhhHHHHHHHHHHHHcCHHHH------------HHHHHHHHHhcCcHHHHHH
Confidence 33 3333 36689999988 57787888999999999998775421 1333334445566666666
Q ss_pred HHHHHHHHhcc
Q 010080 363 EAAWVLSNIAA 373 (518)
Q Consensus 363 ~a~~~Lsnl~~ 373 (518)
..--.|+-|+.
T Consensus 236 ~V~egL~rl~l 246 (253)
T 2db0_A 236 TVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666766653
No 87
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.87 E-value=0.0039 Score=70.80 Aligned_cols=341 Identities=13% Similarity=0.151 Sum_probs=175.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHH-HHhcCCCChHHHHHHHHHHHHHhcCC--hH---HHHHhcCC
Q 010080 94 GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLV-QCLAFGSPDEQLLEAAWCLTNIAAGK--QE---ETKALLPA 167 (518)
Q Consensus 94 ~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv-~~L~~~~~~~~~~eA~~~L~nia~~~--~~---~~~~v~~~ 167 (518)
++.+.+..++.++..+++.- +...+++..+++.+. .++. .+..+..|+.||..+.+.. +. ....+...
T Consensus 207 ~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l~---~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhCC---CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 45677888999998877743 234566778888888 4443 3556566999999998642 11 11111111
Q ss_pred hHHHHHhh-----------------cCCCCHHHHHHHHHHHHhhhC-------CChhhHHHHHhcCChhHHHhhhCCCCh
Q 010080 168 LPLLIAHL-----------------GEKSSSPVAEQCAWALGNVAG-------EGEEFRNVLLSQGALPPLARMMLPNKG 223 (518)
Q Consensus 168 v~~Lv~lL-----------------~~~~~~~v~~~a~~~L~nla~-------d~~~~r~~~~~~g~i~~L~~ll~~~~~ 223 (518)
++.++..+ .+..+.+.....+..+..+.. ..+..+..+ ..+++.++.+...++.
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~ 358 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEER 358 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcH
Confidence 12222211 111233444444444433321 111222222 2346666666666777
Q ss_pred hHHHHHHHHHHHhhc----CCCCCc-hhhHHHhhchHHHHHHHhccCC-------------------h---hHHHHHHHH
Q 010080 224 STVRTAAWALSNLIK----GPDPKP-ATELIKVDGLLDAILRHLKRAD-------------------E---ELTTEVAWV 276 (518)
Q Consensus 224 ~~~~~a~~~L~nL~~----~~~~~~-~~~~i~~~~~l~~L~~lL~~~d-------------------~---~v~~~a~~~ 276 (518)
.+...+.-....+++ .+.... ...+ ...+++.++..+..++ . .....+.-+
T Consensus 359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~--l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~ 436 (1049)
T 3m1i_C 359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEI--CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCGGGGHHH--HHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHH--HHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHH
Confidence 777777766666665 211111 1111 1244555555443211 0 112233445
Q ss_pred HHHhhcCCchhhhHHHhcCchHHHHHHHcc-CCCccchhhhhhhhhhhhcCCCcc-cceeeccCCCchhhhHHHHHHHhc
Q 010080 277 VVYLSALSNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSST-ISDVLVPGHGITDQVIAVLVKCLK 354 (518)
Q Consensus 277 L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~-~~~~i~~G~~~~~~~l~~L~~lL~ 354 (518)
|.+++.-.... ++ .-+.+.+-..+.. +.+...+..+++++|.++.+-... ...++ ..+++.|..+..
T Consensus 437 L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-------~~v~~~l~~l~~ 505 (1049)
T 3m1i_C 437 LVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-------VTVIKDLLDLTV 505 (1049)
T ss_dssp HHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-------HHHHHHHHHHTT
T ss_pred HHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-------HHHHHHHHHHHh
Confidence 55555311111 10 1122333344421 345567889999999987543221 11111 134555555433
Q ss_pred c-----ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHH
Q 010080 355 S-----EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE 429 (518)
Q Consensus 355 ~-----~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~ 429 (518)
. +++.++..+||+++..+.--..+-+.+. .+++.|+..|.+.++.|+..|++++.++|....
T Consensus 506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~----------- 572 (1049)
T 3m1i_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK----------- 572 (1049)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT-----------
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-----------
Confidence 2 3455666799999977642111111121 256678888888889999999999999986421
Q ss_pred HHHHHH--h--------cCchHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080 430 HLVSLV--G--------RGCLSGFIDLVRSADIEAARLGLQFMELVLRGMP 470 (518)
Q Consensus 430 ~~~~l~--~--------~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~ 470 (518)
..+. . ..++..|..++..-+.+-.....+++..++...+
T Consensus 573 --~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 573 --YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp --HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred --HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 1111 0 1123334444444555555666777777776544
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.84 E-value=0.0024 Score=71.91 Aligned_cols=298 Identities=8% Similarity=0.015 Sum_probs=165.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHh-------cCCCC--hHHHHHHHHHHHHHhcCChHH-----
Q 010080 95 AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCL-------AFGSP--DEQLLEAAWCLTNIAAGKQEE----- 160 (518)
Q Consensus 95 ~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L-------~~~~~--~~~~~eA~~~L~nia~~~~~~----- 160 (518)
+++.+..|+.+|..+++..........+ ..++|.++.+. ..++. +......+..+..++......
T Consensus 257 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 335 (971)
T 2x1g_F 257 ENELAESCLKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGI 335 (971)
T ss_dssp HHHHHHHHHHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778889999988764311111122 22345444432 22221 233344556666555322221
Q ss_pred -------HHHhcCChHHHHHhhcC----CCCHHHHHHHHHHHHhhhCC---------ChhhHHHHHh--cCChhHHHhhh
Q 010080 161 -------TKALLPALPLLIAHLGE----KSSSPVAEQCAWALGNVAGE---------GEEFRNVLLS--QGALPPLARMM 218 (518)
Q Consensus 161 -------~~~v~~~v~~Lv~lL~~----~~~~~v~~~a~~~L~nla~d---------~~~~r~~~~~--~g~i~~L~~ll 218 (518)
...+...++.++.+... ..+.++...+++.+..++.+ .+..+..+.. ...++.++..+
T Consensus 336 ~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 415 (971)
T 2x1g_F 336 TSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKS 415 (971)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222466666766533 24678999999998887641 1111111111 13344444444
Q ss_pred CCC-C--------------hhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-----CChhHHHHHHHHHH
Q 010080 219 LPN-K--------------GSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-----ADEELTTEVAWVVV 278 (518)
Q Consensus 219 ~~~-~--------------~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~-----~d~~v~~~a~~~L~ 278 (518)
.-+ + ...++.+.-+|..++... +.. ++ ..+++.+...+.+ .+-..+..++++++
T Consensus 416 ~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~-~~~---~l--~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 416 EQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVL-NDY---IL--EILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp SCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTC-TTH---HH--HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred cCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHH-hHH---HH--HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 321 1 134556666777777532 211 11 2344444444443 34467889999999
Q ss_pred HhhcCCchhhhHHHhcCchHHHHHHHc--c--CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc
Q 010080 279 YLSALSNVATSLLVKSGVLQLLVERLA--T--SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK 354 (518)
Q Consensus 279 ~L~~~~~~~~~~~~~~g~~~~Lv~lL~--~--~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~ 354 (518)
.++.+...... ..++.++.++. . ..++.++..+++++|.++..-....+ .+ ..+++.|+..|
T Consensus 490 ~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-------~~vl~~l~~~l- 555 (971)
T 2x1g_F 490 SVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-------PPAINLLVRGL- 555 (971)
T ss_dssp HTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-------HHHHHHHHHHH-
T ss_pred HHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-------HHHHHHHHHHh-
Confidence 99986543321 23344444332 1 23667888999999998853222112 22 25788888888
Q ss_pred cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC--CChhHHHHHHHHHHHhcCC
Q 010080 355 SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST--SPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 355 ~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~eA~~aL~nl~~~ 416 (518)
+ +.++..||+++.+++..........++ .++..|.+++.. -+.+.+..+..+++.++..
T Consensus 556 ~--~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 556 N--SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp H--SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred C--hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 2 789999999999999766555444443 367777788876 3567888888888888763
No 89
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.82 E-value=0.00091 Score=75.18 Aligned_cols=145 Identities=9% Similarity=0.097 Sum_probs=88.9
Q ss_pred hcCCCChHHHHH-HHHHHHHHhcCChHH-HHHhc-CChHHHHHhhcC----CCCHHHHHHHHHHHHhhhCCChhhHHHHH
Q 010080 134 LAFGSPDEQLLE-AAWCLTNIAAGKQEE-TKALL-PALPLLIAHLGE----KSSSPVAEQCAWALGNVAGEGEEFRNVLL 206 (518)
Q Consensus 134 L~~~~~~~~~~e-A~~~L~nia~~~~~~-~~~v~-~~v~~Lv~lL~~----~~~~~v~~~a~~~L~nla~d~~~~r~~~~ 206 (518)
+...+.+...+| ++|+++.|+.+-.+. -...+ .++|.|+.++.. .+...++..++|++|.++.--....+.
T Consensus 460 l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-- 537 (1023)
T 4hat_C 460 IDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-- 537 (1023)
T ss_dssp HSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH--
T ss_pred hcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH--
Confidence 333334556677 799999999775433 33444 689999998852 123556778889999987521111111
Q ss_pred hcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHH---------HhhchHHHHHHHhccCChhHHHHHHHHH
Q 010080 207 SQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI---------KVDGLLDAILRHLKRADEELTTEVAWVV 277 (518)
Q Consensus 207 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i---------~~~~~l~~L~~lL~~~d~~v~~~a~~~L 277 (518)
=...++.|+..+..+++.++.+|+|+|.+||.... ..++ ....++..+...+..-+++-...+.-++
T Consensus 538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~----~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai 613 (1023)
T 4hat_C 538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK----YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC 613 (1023)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT----HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH----HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11234445555556678999999999999997421 1111 0123333344444445666677888888
Q ss_pred HHhhcCC
Q 010080 278 VYLSALS 284 (518)
Q Consensus 278 ~~L~~~~ 284 (518)
+.+....
T Consensus 614 ~~vi~~~ 620 (1023)
T 4hat_C 614 GIIISEE 620 (1023)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 8888753
No 90
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.74 E-value=0.00086 Score=75.45 Aligned_cols=339 Identities=12% Similarity=0.088 Sum_probs=179.7
Q ss_pred HHHH-HHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhC
Q 010080 142 QLLE-AAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMML 219 (518)
Q Consensus 142 ~~~e-A~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~ 219 (518)
...| |+++++.++.+-.......+ ..++.+..+ .+ +++.|+..++|++|.++..-.... . .-..+++.|+..|.
T Consensus 464 ~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~-~~~~vr~~~~~~l~~~~~~l~~~~-~-~l~~vl~~l~~~l~ 539 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SI-SNVQLADTVMFTIGALSEWLADHP-V-MINSVLPLVLHALG 539 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CC-CSHHHHHHHHHHHHHTHHHHHHCH-H-HHTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CC-CcHHHHHHHHHHHHHHHHHHHhCH-H-HHHHHHHHHHHHhC
Confidence 4455 89999999976432111111 233322222 22 478899999999999885211111 1 22367888888775
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccC--ChhHHHHHHHHHHHhhcCCc-hhhhHHHhcCc
Q 010080 220 PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRA--DEELTTEVAWVVVYLSALSN-VATSLLVKSGV 296 (518)
Q Consensus 220 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~-~~~~~~~~~g~ 296 (518)
+ +.++..|+++|.++|+...... ... ..++++.|..++... +.+.+..++-+++.++...+ +.....+ ..+
T Consensus 540 ~--~~V~~~A~~al~~l~~~~~~~l-~p~--~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~~l 613 (963)
T 2x19_B 540 N--PELSVSSVSTLKKICRECKYDL-PPY--AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-HSL 613 (963)
T ss_dssp C--GGGHHHHHHHHHHHHHHTGGGC-TTT--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-HHH
T ss_pred C--chHHHHHHHHHHHHHHHHHHHH-Hhh--HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-HHH
Confidence 4 7899999999999996421110 011 134555556666642 46788888888988886432 2322222 234
Q ss_pred hHHHHHHHc---cC-CCccch---hhhhhhhhhhhcCCCcc-------------------cceeeccCCCchhhhHHHHH
Q 010080 297 LQLLVERLA---TS-NSLQLL---IPVLRSLGNLVAGDSST-------------------ISDVLVPGHGITDQVIAVLV 350 (518)
Q Consensus 297 ~~~Lv~lL~---~~-~~~~v~---~~al~~L~nl~~~~~~~-------------------~~~~i~~G~~~~~~~l~~L~ 350 (518)
++.+...+. .. .+++.. ...+.+|+.+...-... ...+.. +...+++.+.
T Consensus 614 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 689 (963)
T 2x19_B 614 ISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV----VLQQVFQLIQ 689 (963)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH----HHHHHHHHHH
Confidence 444444432 11 122222 24555565555331110 000100 1234566666
Q ss_pred HHhcc--ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh----cC-CChhHHHHHHHHHHHhcC--CCCCCC
Q 010080 351 KCLKS--EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL----ST-SPFDIKKEVAYVLGNLCV--SPTEGE 421 (518)
Q Consensus 351 ~lL~~--~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL----~~-~~~~v~~eA~~aL~nl~~--~~~~~~ 421 (518)
.++.. .+..+.+.+|.+++.++..-.+... ..+|.++..+ .. ... ..++.++.++. +.. .
T Consensus 690 ~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~--~ 758 (963)
T 2x19_B 690 KVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE--P 758 (963)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC--T
T ss_pred HHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC--c
Confidence 66643 3567889999999987642111111 1344444433 22 222 34455555544 211 0
Q ss_pred CCchhHHHHHHHHHhcCchHHHHHhhc---cCCHHHHHHHHHHHHHHHccCCCCcc-hhH-HHhhchHHHHHHHhcCCCH
Q 010080 422 GKPKLIQEHLVSLVGRGCLSGFIDLVR---SADIEAARLGLQFMELVLRGMPNHEG-TKL-VEREDGIDAMERFQFHENE 496 (518)
Q Consensus 422 ~~~~~~~~~~~~l~~~g~i~~L~~lL~---~~d~~~~~~~l~~l~~il~~~~~~~~-~~~-ie~~ggl~~l~~L~~~~~~ 496 (518)
... ..+..++ ..++..++.++. ..++++.......+..+++.++.... ... ++ ..++.+.....+++.
T Consensus 759 ~~~----~~~~~~l-~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~--~i~~~~~~~l~~~~~ 831 (963)
T 2x19_B 759 AHF----PPIEALF-LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVK--AVFQCAVLALKFPEA 831 (963)
T ss_dssp TTC----HHHHHHH-HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHH--HHHHHHHHHTTCSCH
T ss_pred chH----HHHHHHH-HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHH--HHHHHHHHHcCCCCH
Confidence 011 1122211 112334444443 24699999999999999987653211 000 11 122333344568999
Q ss_pred HHHHHHHHHHHhhcCc
Q 010080 497 DLRNMANGLVDKYFGE 512 (518)
Q Consensus 497 ~i~~~a~~il~~~f~~ 512 (518)
++.+.|..++..++..
T Consensus 832 ~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 832 PTVKASCGFFTELLPR 847 (963)
T ss_dssp HHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999888876643
No 91
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.72 E-value=0.00044 Score=77.81 Aligned_cols=252 Identities=10% Similarity=0.063 Sum_probs=147.3
Q ss_pred HHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcC-----CCCHHHHHHHHHHHHhhhCCChhhHHHHHhc-----CChhH
Q 010080 145 EAAWCLTNIAAGKQEETKALL-PALPLLIAHLGE-----KSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-----GALPP 213 (518)
Q Consensus 145 eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~-----~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-----g~i~~ 213 (518)
.|..+|..++.... +.++ ..++.+...+.. +++...++.|+.++|.++......... ... ...+.
T Consensus 380 aa~~~L~~l~~~~~---~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~~l~~~ 455 (960)
T 1wa5_C 380 ACTDFLKELKEKNE---VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLLNVVDF 455 (960)
T ss_dssp HHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTCCHHHH
T ss_pred HHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC-cccccccccHHHH
Confidence 46666666664433 2222 133344344431 256789999999999998532111000 000 11111
Q ss_pred ----HHhhhCCC---ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCc-
Q 010080 214 ----LARMMLPN---KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSN- 285 (518)
Q Consensus 214 ----L~~ll~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~- 285 (518)
++..+.++ ++-++..++|+++.++..-. .+. ...+++.+++.|.+++..|+..||++|.+++...+
T Consensus 456 l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~----~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~ 529 (960)
T 1wa5_C 456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT----KAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRES 529 (960)
T ss_dssp HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----HHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC----HHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc
Confidence 22233444 78899999999999997531 223 35788999999988888999999999999986321
Q ss_pred ------hh-hhHHH--hcCchHHHHHHHccCC----CccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHH
Q 010080 286 ------VA-TSLLV--KSGVLQLLVERLATSN----SLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKC 352 (518)
Q Consensus 286 ------~~-~~~~~--~~g~~~~Lv~lL~~~~----~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~l 352 (518)
+. ...+. -..+++.|..++.... .......++.+|+.++....+.....+ ..+++.|...
T Consensus 530 ~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-------~~l~~~L~~~ 602 (960)
T 1wa5_C 530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-------PQLLAQFIEI 602 (960)
T ss_dssp SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-------HHHHHHHHHH
T ss_pred cccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHH
Confidence 11 11111 1245566666664321 111345677778777644333332232 2366666665
Q ss_pred hcc-----ChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 353 LKS-----EHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 353 L~~-----~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
+.. .++..+..++-+|+.++.. .++....+. ..++|.+..+|.....+....+...+..+.
T Consensus 603 l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 603 VTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 532 3456677788888888765 444444443 347899999997766666666666666554
No 92
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.62 E-value=0.02 Score=54.30 Aligned_cols=135 Identities=14% Similarity=0.199 Sum_probs=100.4
Q ss_pred HHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-
Q 010080 185 EQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK- 263 (518)
Q Consensus 185 ~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~- 263 (518)
..+...|+-+.. .....+-++...++..+...++-++.++.+..+..|...+..+. .+. ......+|.+++.+.
T Consensus 261 tR~FDLL~LLmH-dSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks--L~~--t~L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 261 IRTFDLLGLLLH-DSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA--LAK--TPLENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHHHCC-SHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG--GGT--SCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-ccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH--Hhh--ccccccchHHHHHhcc
Confidence 334444444444 55777888899999999999999999999999999998875531 121 123578999998887
Q ss_pred cCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCc-------------cchhhhhhhhhhhh
Q 010080 264 RADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSL-------------QLLIPVLRSLGNLV 324 (518)
Q Consensus 264 ~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~-------------~v~~~al~~L~nl~ 324 (518)
++++++.-.....|+|.........+..+..|+++.|...+..++-. .+...++|++.|+.
T Consensus 336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFL 409 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFL 409 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhe
Confidence 78889999999999999987766677778899999998887644321 12345666777665
No 93
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.62 E-value=0.0035 Score=69.15 Aligned_cols=265 Identities=12% Similarity=0.164 Sum_probs=176.8
Q ss_pred CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhh
Q 010080 209 GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVAT 288 (518)
Q Consensus 209 g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 288 (518)
+++..|...+.+.+.. +.|+-++..||+.....+..+... -+.+|.++....+.+..|+..|-.++..+...-+...
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 5667777777765444 999999999996543333334322 3688888888888888888888877777775322221
Q ss_pred hHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHH
Q 010080 289 SLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVL 368 (518)
Q Consensus 289 ~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~L 368 (518)
+ ..++|.|+..|......+....|+.+++.++...+.+...-+ ..++|.+...+.+.++.+++.|.-++
T Consensus 131 --~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~d~k~~v~~~~~~~~ 199 (986)
T 2iw3_A 131 --I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-------PELIPVLSETMWDTKKEVKAAATAAM 199 (986)
T ss_dssp --H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-------HHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred --H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-------cchhcchHhhcccCcHHHHHHHHHHH
Confidence 1 456899999996555788899999999999976555544333 36899999999999999999999999
Q ss_pred HHhccC--CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHh
Q 010080 369 SNIAAG--SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDL 446 (518)
Q Consensus 369 snl~~~--~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~l 446 (518)
-.+|.. +.+ + ...+|.|+..+.+++. --++...|+.-+.-.+ . ..| .-.+ .+|.|..-
T Consensus 200 ~~~~~~~~n~d-~-----~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~-v-~~~------~l~~----~~p~l~r~ 259 (986)
T 2iw3_A 200 TKATETVDNKD-I-----ERFIPSLIQCIADPTE--VPETVHLLGATTFVAE-V-TPA------TLSI----MVPLLSRG 259 (986)
T ss_dssp HHHGGGCCCTT-T-----GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSC-C-CHH------HHHH----HHHHHHHH
T ss_pred HHHHhcCCCcc-h-----hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEee-e-cch------hHHH----HHHHHHhh
Confidence 888762 321 1 2468999999998853 2344444443332211 0 001 0111 35666667
Q ss_pred hccCCHHHHHHHHHHHHHHHccCCCCcc-hhHHHhhchHHHHHH-HhcCCCHHHHHHHHHHHHhh
Q 010080 447 VRSADIEAARLGLQFMELVLRGMPNHEG-TKLVEREDGIDAMER-FQFHENEDLRNMANGLVDKY 509 (518)
Q Consensus 447 L~~~d~~~~~~~l~~l~~il~~~~~~~~-~~~ie~~ggl~~l~~-L~~~~~~~i~~~a~~il~~~ 509 (518)
|....+.+.+++.-.+.|+++-..+... ..++. .-++.++. .....+||+++.|.+-+++.
T Consensus 260 l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 260 LNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG--KLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT--TTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred hccCcchhheeeEEEEcchhhhcCCHHHHhhhhh--hhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 7778899999999999999987655211 11221 22333433 25668999888776666655
No 94
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.58 E-value=0.0043 Score=69.56 Aligned_cols=309 Identities=17% Similarity=0.129 Sum_probs=165.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC--hHHHHHhcCCh--
Q 010080 93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK--QEETKALLPAL-- 168 (518)
Q Consensus 93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~--~~~~~~v~~~v-- 168 (518)
+.++.....++.++..+++. .++..++..+.++.+..+|.. +..+..|+.||+.|.+.. ++....++..+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 46778888999999998884 456778888999999999974 456566999999998544 33333333211
Q ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHhhh-------CCC----hhhHHHH--HhcCChhHHHhhhCCCChhHHHHHHHHHH
Q 010080 169 PLLIAHLGE-KSSSPVAEQCAWALGNVA-------GEG----EEFRNVL--LSQGALPPLARMMLPNKGSTVRTAAWALS 234 (518)
Q Consensus 169 ~~Lv~lL~~-~~~~~v~~~a~~~L~nla-------~d~----~~~r~~~--~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 234 (518)
...+.-+.. ..+.++.+..+..+..++ .+. ++.+... .-.+.++.++.++.+++.++...+.-.+.
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~ 357 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLS 357 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 112222221 356666554444333221 111 1111111 11357888889988887777665555544
Q ss_pred HhhcC----CCCCchhhHHH--hhchHHHHHHHhccCC----------h------hHHHHHHHHHHHhhc--CCchhhhH
Q 010080 235 NLIKG----PDPKPATELIK--VDGLLDAILRHLKRAD----------E------ELTTEVAWVVVYLSA--LSNVATSL 290 (518)
Q Consensus 235 nL~~~----~~~~~~~~~i~--~~~~l~~L~~lL~~~d----------~------~v~~~a~~~L~~L~~--~~~~~~~~ 290 (518)
.+... .......+... ...+++.+++-+..++ + +.+.+.. .+...+. +.+.....
T Consensus 358 ~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 358 DLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHH
Confidence 44421 10000111100 1234444444443211 1 2333333 3332221 11111111
Q ss_pred HHhcCchHHH-HHHHc--cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhc-----cChhhhHH
Q 010080 291 LVKSGVLQLL-VERLA--TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLK-----SEHRVLKK 362 (518)
Q Consensus 291 ~~~~g~~~~L-v~lL~--~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~-----~~~~~i~~ 362 (518)
+.+ .+..+ ...+. .+.+...++.++.+|+.++.+-......+ .........+++.+..++. ++++.|+.
T Consensus 437 ~~~--~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~ 513 (980)
T 3ibv_A 437 MYS--AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF-NEVDKSPTVLSQILALVTTSQVCRHPHPLVQL 513 (980)
T ss_dssp HHH--HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB-CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHH
T ss_pred HHH--HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc-CcccchhHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 110 12222 22221 12345667889999999887643211111 0000011247777777776 67889999
Q ss_pred HHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh------cCCChhHHHHHHHHHHHhcCCC
Q 010080 363 EAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL------STSPFDIKKEVAYVLGNLCVSP 417 (518)
Q Consensus 363 ~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL------~~~~~~v~~eA~~aL~nl~~~~ 417 (518)
.+||+++..+.--.. ....+|++++.+ .+++.+|+..|++++.++|...
T Consensus 514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 999999988753211 124555655555 3466789999999999998753
No 95
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.52 E-value=0.0007 Score=64.64 Aligned_cols=189 Identities=15% Similarity=0.091 Sum_probs=130.9
Q ss_pred HHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeecc
Q 010080 258 ILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVP 337 (518)
Q Consensus 258 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~ 337 (518)
++.-|.+.+.+.+..++.-|..+...+.+....++..+++..|+... ...+.+++..+|++++++....+- ...++.
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q~Y~L~AL~~LM~~v~G-m~gvvs- 199 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVG-AAADHNYQSYILRALGQLMLFVDG-MLGVVA- 199 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHH-TTSCHHHHHHHHHHHHHHTTSHHH-HHHHHH-
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHH-HhcChHHHHHHHHHHHHHHhcccc-ccchhC-
Confidence 34555567778899999999985545778899999999999999988 467888999999999999765321 112222
Q ss_pred CCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHh----------CCCHHHHHHHhc---CCChhHHH
Q 010080 338 GHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHS----------SEALALLLHLLS---TSPFDIKK 404 (518)
Q Consensus 338 G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~----------~~~i~~Li~lL~---~~~~~v~~ 404 (518)
...++..+..++.+....|.+.|..+|-+++..++.....+.. ...++.|+.+|+ ++|.+++.
T Consensus 200 ----~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 200 ----HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp ----CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred ----CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 1357888999999888899999999999998765433333322 124789999997 78889998
Q ss_pred HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC--CHHHHHH
Q 010080 405 EVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA--DIEAARL 457 (518)
Q Consensus 405 eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~--d~~~~~~ 457 (518)
.|...|..+..+.. + .....+....+-+.|.=..+...+... |++++.+
T Consensus 276 ~amtLIN~lL~~ap---d-~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 276 YTVTLINKTLAALP---D-QDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHCS---S-HHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCC---C-hhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 88777666554321 1 100123444555666656666666654 5555543
No 96
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.50 E-value=0.0028 Score=60.54 Aligned_cols=153 Identities=13% Similarity=0.160 Sum_probs=117.3
Q ss_pred HHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhH
Q 010080 348 VLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLI 427 (518)
Q Consensus 348 ~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~ 427 (518)
.++.-|.+++...++.+.+-|..+.......+..+++.+++..|+.+...++..++.-++.|+.++..+.
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v---------- 191 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV---------- 191 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH----------
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc----------
Confidence 3445555666677889999999976666789999999999999999999999999999999999997641
Q ss_pred HHHHHHHH-hcCchHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhc------h---HHHHHHHhc---CC
Q 010080 428 QEHLVSLV-GRGCLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVERED------G---IDAMERFQF---HE 494 (518)
Q Consensus 428 ~~~~~~l~-~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~g------g---l~~l~~L~~---~~ 494 (518)
.-..-++ ....|.-+..++.+.++.+++.+|+.|..+..+.+.+ +.....+.. | ++.|..+.. ..
T Consensus 192 -~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~-~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~ 269 (339)
T 3dad_A 192 -DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENN-APLFIRAVNSVASTTGAPPWANLVSILEEKNGA 269 (339)
T ss_dssp -HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC
T ss_pred -ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCccc-chHHHHHHHHhhhccCCCcHHHHHHHHhccCCC
Confidence 1223344 4568899999999999999999999999998876432 222222222 2 666666554 78
Q ss_pred CHHHHHHHHHHHHhhcCc
Q 010080 495 NEDLRNMANGLVDKYFGE 512 (518)
Q Consensus 495 ~~~i~~~a~~il~~~f~~ 512 (518)
+.+++..|..+|...|..
T Consensus 270 D~elq~~amtLIN~lL~~ 287 (339)
T 3dad_A 270 DPELLVYTVTLINKTLAA 287 (339)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999887754
No 97
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.36 E-value=0.03 Score=62.77 Aligned_cols=337 Identities=12% Similarity=0.112 Sum_probs=179.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhc-C-CCChHHHHHHHHHHHHHhcCChHHHHHhcCChH
Q 010080 92 GKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA-F-GSPDEQLLEAAWCLTNIAAGKQEETKALLPALP 169 (518)
Q Consensus 92 ~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~-~-~~~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~ 169 (518)
.+.+...+-.++..+..+...-... . ...++.++..|. - .+.+.++..++|+++.++.--..+.+.+-..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-Y-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-C-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-h-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 3445556666667776644332211 0 223444444442 1 134556567999999998532223333446899
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHH----hhhCCC--ChhHHHHHHHHHHHhhcCCCCC
Q 010080 170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLA----RMMLPN--KGSTVRTAAWALSNLIKGPDPK 243 (518)
Q Consensus 170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~----~ll~~~--~~~~~~~a~~~L~nL~~~~~~~ 243 (518)
.++..|.+ +.|+..|+++|.+++.+. +..+. ..++.++ .++... +...+..+.-+++.++....+.
T Consensus 533 ~l~~~l~~---~~V~~~A~~al~~l~~~~---~~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~ 604 (963)
T 2x19_B 533 LVLHALGN---PELSVSSVSTLKKICREC---KYDLP--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE 604 (963)
T ss_dssp HHHHHTTC---GGGHHHHHHHHHHHHHHT---GGGCT--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHhCC---chHHHHHHHHHHHHHHHH---HHHHH--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence 99999853 789999999999999643 22222 2344443 444432 4677888888888888542111
Q ss_pred chhhHHHhhchHHHHHHHhc----cC-ChhHHH---HHHHHHHHhhcC----Cc------------------hhhhHHHh
Q 010080 244 PATELIKVDGLLDAILRHLK----RA-DEELTT---EVAWVVVYLSAL----SN------------------VATSLLVK 293 (518)
Q Consensus 244 ~~~~~i~~~~~l~~L~~lL~----~~-d~~v~~---~a~~~L~~L~~~----~~------------------~~~~~~~~ 293 (518)
..... ...+++.+...+. .. +++... ..+-+|+.+... .+ ..... +.
T Consensus 605 ~~~~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 681 (963)
T 2x19_B 605 EILKN--LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VL 681 (963)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HH
Confidence 11111 1244444444332 22 333322 344444444321 00 00111 12
Q ss_pred cCchHHHHHHHcc-CCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhh-hHHHHHHHHHHh
Q 010080 294 SGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV-LKKEAAWVLSNI 371 (518)
Q Consensus 294 ~g~~~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~-i~~~a~~~Lsnl 371 (518)
..+.+.+..++.. ..+..+...++++++.++..-..... ..+|.++..+...-.. -....+++++.+
T Consensus 682 ~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----------~~l~~~~~~l~~~~~~~~~~~~l~l~~~l 750 (963)
T 2x19_B 682 QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----------PMVPQLCEMLGRMYSTIPQASALDLTRQL 750 (963)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----------GGHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----------ccHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 2344444444432 23557888899999988754322221 2444444433111100 012466777777
Q ss_pred cc--CCH----HHHHHHHhCCCHHHHHHHhc---CCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcC----
Q 010080 372 AA--GSV----EHKQLIHSSEALALLLHLLS---TSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRG---- 438 (518)
Q Consensus 372 ~~--~~~----~~~~~li~~~~i~~Li~lL~---~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g---- 438 (518)
+. +.. ..+..+++. ++..++.++. ...++++......+..++... | ..+....
T Consensus 751 i~~f~~~~~~~~~~~~~l~~-~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~------~-------~~~~~~~~~~~ 816 (963)
T 2x19_B 751 VHIFAHEPAHFPPIEALFLL-VTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRK------P-------DLFLCERLDVK 816 (963)
T ss_dssp HHHHTTCTTTCHHHHHHHHH-HHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHC------G-------GGGGCTTSCHH
T ss_pred HHHhCCCcchHHHHHHHHHH-HHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhC------c-------HHHcCCcccHH
Confidence 65 322 223223222 3444555554 235889999988888876532 1 1111112
Q ss_pred -chHHHHHhhccCCHHHHHHHHHHHHHHHccCC
Q 010080 439 -CLSGFIDLVRSADIEAARLGLQFMELVLRGMP 470 (518)
Q Consensus 439 -~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~ 470 (518)
+++.++..|+..++.+...++.++..++....
T Consensus 817 ~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 817 AVFQCAVLALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 34455666778999999999999999987643
No 98
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.01 E-value=0.059 Score=51.37 Aligned_cols=208 Identities=15% Similarity=0.177 Sum_probs=145.8
Q ss_pred HHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCC--CchhhHHH-hhchHHHHHHHhccCChhHHHHHHHHHHH
Q 010080 203 NVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP--KPATELIK-VDGLLDAILRHLKRADEELTTEVAWVVVY 279 (518)
Q Consensus 203 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~i~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 279 (518)
..+...+.+..|+..|..=+-+.++.++-.++++.+.... .+..+.+. ...++..|+.. .+++++...+=-.|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--Ye~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKG--YESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHG--GGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHh--hccchhHhHHHHHHHH
Confidence 3445667788888888877888899999999999876321 12222322 11223333322 3445665555555666
Q ss_pred hhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhh
Q 010080 280 LSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRV 359 (518)
Q Consensus 280 L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~ 359 (518)
+.. .+.....++..+.+..+.+++ ..++-++...|..++.-+.+.....+...+... -..+...+..+|.+++.-
T Consensus 150 cir-~e~la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~n---yd~Ff~~y~~Ll~S~NYV 224 (341)
T 1upk_A 150 CIR-HEPLAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQH---YDRFFSEYEKLLHSENYV 224 (341)
T ss_dssp HHT-SHHHHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT---HHHHHHHHHHHTTCSSHH
T ss_pred HHH-hHHHHHHHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHh---HHHHHHHHHHHhcCCcch
Confidence 555 455677788888888999988 578888999999999888877654443333221 124677788899999999
Q ss_pred hHHHHHHHHHHhccC--CHHHHHHHH-hCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCC
Q 010080 360 LKKEAAWVLSNIAAG--SVEHKQLIH-SSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSP 417 (518)
Q Consensus 360 i~~~a~~~Lsnl~~~--~~~~~~~li-~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~ 417 (518)
+|+.+...|+.|.-. +.......+ +..-+..++.+|++.+..+|-||..+.--.+.++
T Consensus 225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999999999999865 333333333 3356889999999999999999999998888765
No 99
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.91 E-value=0.33 Score=54.54 Aligned_cols=336 Identities=12% Similarity=0.119 Sum_probs=171.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHH-HHHhcCCCChHHHHHHHHHHHHHhcCC-hHHHHHh---c-C
Q 010080 93 KGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVL-VQCLAFGSPDEQLLEAAWCLTNIAAGK-QEETKAL---L-P 166 (518)
Q Consensus 93 s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~L-v~~L~~~~~~~~~~eA~~~L~nia~~~-~~~~~~v---~-~ 166 (518)
+++++....++..++.+++.- ++..+++.++++.+ ..+|. .+..+..|+.||+.|.+.. ++....+ + .
T Consensus 218 ~~~~~lv~~~L~~L~~~~sWI---~i~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNWI---PLGYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhc---CHHHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 456777777889999987763 45778899999988 47775 2455556999999998643 2211222 1 1
Q ss_pred ChHHHHHhhc------------CCCCHHHHHHHHHHHHhhhCCChhhHHHHHhc-C-------ChhHHHhhhCCCChhHH
Q 010080 167 ALPLLIAHLG------------EKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ-G-------ALPPLARMMLPNKGSTV 226 (518)
Q Consensus 167 ~v~~Lv~lL~------------~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~-g-------~i~~L~~ll~~~~~~~~ 226 (518)
.+..+-.++. ...+.+....-+..+..+.. .....+... + ++..|+.+-..++.++.
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e---~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~ 368 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLK---EHGQLLEKRLNLREALMEALHYMLLVSEVEETEIF 368 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHH---HHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHH---HHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHH
Confidence 2222212221 11223444444444444432 222222222 1 12223334445677777
Q ss_pred HHHHHH----HHHhhcCCC----CC-----------chhhHHHhhchHHHHHHHh----ccCCh----------------
Q 010080 227 RTAAWA----LSNLIKGPD----PK-----------PATELIKVDGLLDAILRHL----KRADE---------------- 267 (518)
Q Consensus 227 ~~a~~~----L~nL~~~~~----~~-----------~~~~~i~~~~~l~~L~~lL----~~~d~---------------- 267 (518)
+.+.-. ...|.+... .. +.+..+ -.+++..|..++ ..+++
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~-y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~ 447 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQL-YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM 447 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHT-THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHH-HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence 665422 223332110 00 011110 013333333322 21110
Q ss_pred ---------hHHHHHHHHHHHhhcC-CchhhhHHHhcCchHHHHHHHcc-CCCccchhhhhhhhhhhhcCCCc-ccceee
Q 010080 268 ---------ELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLAT-SNSLQLLIPVLRSLGNLVAGDSS-TISDVL 335 (518)
Q Consensus 268 ---------~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~~~~Lv~lL~~-~~~~~v~~~al~~L~nl~~~~~~-~~~~~i 335 (518)
.+..+++ .+++.- ..+..+. ..+.+.+.+.. ..+...+..+|+++|.|+..-.. ....++
T Consensus 448 ~d~~~~~ly~~mrd~L---~~lt~l~~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L 519 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETL---VYLTHLDYVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL 519 (1073)
T ss_dssp SSCHHHHHHHHHHHHH---HHHHHHCHHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred hhcchHHHHHHHHHHH---HHHhcCCHHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH
Confidence 1222333 444421 1112221 23444444422 23466788999999999743322 111222
Q ss_pred ccCCCchhhhHHHHHHHhccC-----hhhhHHHHHHHHHHhccC---CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHH
Q 010080 336 VPGHGITDQVIAVLVKCLKSE-----HRVLKKEAAWVLSNIAAG---SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVA 407 (518)
Q Consensus 336 ~~G~~~~~~~l~~L~~lL~~~-----~~~i~~~a~~~Lsnl~~~---~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~ 407 (518)
..+++.|+.+..+. +..++...||++|..+.- .++.... ++..|++.+...++.|+..|+
T Consensus 520 -------p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~ 587 (1073)
T 3gjx_A 520 -------VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMAC 587 (1073)
T ss_dssp -------HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHH
T ss_pred -------HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHH
Confidence 24677777776554 335667788999876542 3343333 345677778888889999999
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHHHh--cC----chHHHHHhh----ccCCHHHHHHHHHHHHHHHccCCC
Q 010080 408 YVLGNLCVSPTEGEGKPKLIQEHLVSLVG--RG----CLSGFIDLV----RSADIEAARLGLQFMELVLRGMPN 471 (518)
Q Consensus 408 ~aL~nl~~~~~~~~~~~~~~~~~~~~l~~--~g----~i~~L~~lL----~~~d~~~~~~~l~~l~~il~~~~~ 471 (518)
-|+..+|..+. +.++. .| .+..++..+ ..-+++-+....+++..++...++
T Consensus 588 ~af~~i~~~C~-------------~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~ 648 (1073)
T 3gjx_A 588 DTFIKIAQKCR-------------RHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTD 648 (1073)
T ss_dssp HHHHHHHHHTG-------------GGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHH-------------HHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Confidence 99999987532 11111 01 222233222 223566667777888888877654
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.89 E-value=0.011 Score=59.84 Aligned_cols=251 Identities=12% Similarity=0.093 Sum_probs=158.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC
Q 010080 87 AVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP 166 (518)
Q Consensus 87 ~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~ 166 (518)
++..+-++.=+.+.-|...||.++...... +|.. ...+ . --|+++++-++-+.
T Consensus 179 L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N-~---DLAvRLLCVLALDR--------- 231 (800)
T 3oc3_A 179 ISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVD-S---KLFSKIYEILVTDK--------- 231 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHBC---------
T ss_pred HHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------cccc-H---HHHHHHHHHHHhcc---------
Confidence 334566888899999999999998865421 1221 1111 1 12556666666321
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchh
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPAT 246 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 246 (518)
|-.+.+..--..|||.|+.+||.+ ..-+.- ..++..|+..+..+..+++-.++-.|.++..- ..
T Consensus 232 ----FGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DL-----L~ 295 (800)
T 3oc3_A 232 ----FNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEF-----VE 295 (800)
T ss_dssp ----CBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGG-----CC
T ss_pred ----ccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHH-----HH
Confidence 112222223468999999999998 533321 34455555555667789999999999998211 01
Q ss_pred hHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccch-hhhhhhhhhhhc
Q 010080 247 ELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLL-IPVLRSLGNLVA 325 (518)
Q Consensus 247 ~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~-~~al~~L~nl~~ 325 (518)
+ -.+++|.++..|.+.|++|+..|+.+|.-++ .++... .++..+.+.|.+..+.... ..++..|+.+++
T Consensus 296 ~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 296 D---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYR 365 (800)
T ss_dssp C---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHc
Confidence 1 2578899999999999999999999999998 333333 3355666666543333222 355667777776
Q ss_pred CCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHH-HHhcCCChhHHH
Q 010080 326 GDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLL-HLLSTSPFDIKK 404 (518)
Q Consensus 326 ~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li-~lL~~~~~~v~~ 404 (518)
.+.... . ....+|.|..++.|.-++||+.+..++..+. ... ++..+. ++|-..+.+++.
T Consensus 366 ~p~~a~---~------dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~ 425 (800)
T 3oc3_A 366 ENPELS---I------PPERLKDIFPCFTSPVPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIRE 425 (800)
T ss_dssp HCTTCC---C------CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHH
T ss_pred CCcccc---c------ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHH
Confidence 663211 1 2368999999999999999999999998776 211 233333 334556667776
Q ss_pred HHHHHH
Q 010080 405 EVAYVL 410 (518)
Q Consensus 405 eA~~aL 410 (518)
.+..+-
T Consensus 426 lS~~VW 431 (800)
T 3oc3_A 426 MAIKLL 431 (800)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 101
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.88 E-value=0.086 Score=59.74 Aligned_cols=101 Identities=11% Similarity=0.141 Sum_probs=64.0
Q ss_pred ChhhhHHHHHHHHHHhccCCHHHH-HHHHhCCCHHHHHHHhcC-----CChhHHHHHHHHHHHhcCCCCCCCCCchhHHH
Q 010080 356 EHRVLKKEAAWVLSNIAAGSVEHK-QLIHSSEALALLLHLLST-----SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE 429 (518)
Q Consensus 356 ~~~~i~~~a~~~Lsnl~~~~~~~~-~~li~~~~i~~Li~lL~~-----~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~ 429 (518)
.++..+..|+|+++.++.+..+.. ..++. .+++.|..+... +.+.++..++|+++.++... ..
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~----------~~ 533 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFL----------KA 533 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHH----------HH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH----------Hh
Confidence 456788999999999986533221 12111 145555554332 23445657999999876431 01
Q ss_pred HHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 430 HLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 430 ~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
+-+++. .+++.|+..|.++++.+...|..++.++++.+
T Consensus 534 ~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 534 HWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp CHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 111221 35677888888888999999999999998754
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.026 Score=53.30 Aligned_cols=187 Identities=14% Similarity=0.145 Sum_probs=121.4
Q ss_pred HHHHHccCCCccchhhhhhhhhhhhcCCCccc--ceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC--
Q 010080 300 LVERLATSNSLQLLIPVLRSLGNLVAGDSSTI--SDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS-- 375 (518)
Q Consensus 300 Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~--~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~-- 375 (518)
+-+.| .|.+...+..++..+..+........ ...+.. -....+.+...+.+.+..+...++-++..++...
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~----~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQI----YWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CC----TTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHH----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 44566 58888999999988888775432211 111100 0135667788888889999999999999887531
Q ss_pred ----HHHHHHHHhCCCHHHHHHH-hcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccC
Q 010080 376 ----VEHKQLIHSSEALALLLHL-LSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSA 450 (518)
Q Consensus 376 ----~~~~~~li~~~~i~~Li~l-L~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~ 450 (518)
.......+ ..++|.|+.- |.+....++..|..++..++.... .+ . . ++..+...+..+
T Consensus 89 ~~~~~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~----~~----~---~-----~~e~l~~~l~~K 151 (278)
T 4ffb_C 89 SSLKNAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT----SI----T---Q-----SVELVIPFFEKK 151 (278)
T ss_dssp --CCHHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS----SS----H---H-----HHHHHGGGGGCS
T ss_pred hhcccchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC----cH----H---H-----HHHHHHHHHhcc
Confidence 11122222 2367888764 788888899888888877764321 11 1 1 345677788999
Q ss_pred CHHHHHHHHHHHHHHHcc-CCCCcchh-HHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 010080 451 DIEAARLGLQFMELVLRG-MPNHEGTK-LVEREDGIDAMERFQFHENEDLRNMANGLVDKYF 510 (518)
Q Consensus 451 d~~~~~~~l~~l~~il~~-~~~~~~~~-~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f 510 (518)
.|.++..++..|..++.. +....... .+. ..+..+-.+..|.|++|++.|..++-.+|
T Consensus 152 npkv~~~~l~~l~~~l~~fg~~~~~~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 152 LPKLIAAAANCVYELMAAFGLTNVNVQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcCCchhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999999999999998864 22211111 111 12344666789999999999998876655
No 103
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.73 E-value=0.23 Score=55.64 Aligned_cols=342 Identities=13% Similarity=0.075 Sum_probs=178.0
Q ss_pred hHHHHH-HHHHHHHHhcCChHHHHHh------c-CChHHHHHhhc----CCCCHHHHHHHHHHHHhhhCCChhhHHHHHh
Q 010080 140 DEQLLE-AAWCLTNIAAGKQEETKAL------L-PALPLLIAHLG----EKSSSPVAEQCAWALGNVAGEGEEFRNVLLS 207 (518)
Q Consensus 140 ~~~~~e-A~~~L~nia~~~~~~~~~v------~-~~v~~Lv~lL~----~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~ 207 (518)
+....| |+.+|..++.+-......+ . ..++.+..++. +.+++.|+..++|+++..+..-.. .
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~ 529 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------E 529 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------C
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------C
Confidence 344567 7889999987654322211 1 13455555543 136899999999999998864322 2
Q ss_pred cCChhHHHhhhC------CCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc-----CCh---------
Q 010080 208 QGALPPLARMML------PNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR-----ADE--------- 267 (518)
Q Consensus 208 ~g~i~~L~~ll~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~-----~d~--------- 267 (518)
...+++++..+- +++..++..|+.++.++|+...+.... . ...++..+..+|.. .++
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~-~--~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN-Y--TESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS-S--HHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh-H--HHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 345666665443 456789999999999999764322111 1 11233333333431 111
Q ss_pred -------hHHHHHHHHHHHhhcC---CchhhhHHHhcCchHHHHHHHc----cCCCc-c---chhhhhhhhhhhhcCCCc
Q 010080 268 -------ELTTEVAWVVVYLSAL---SNVATSLLVKSGVLQLLVERLA----TSNSL-Q---LLIPVLRSLGNLVAGDSS 329 (518)
Q Consensus 268 -------~v~~~a~~~L~~L~~~---~~~~~~~~~~~g~~~~Lv~lL~----~~~~~-~---v~~~al~~L~nl~~~~~~ 329 (518)
+-+....-+++.|... +.+.....+ ..+++.++.-+. ...+. + -....+.++|.++.+-+.
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l-~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~ 685 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYC-DSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPA 685 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHH-HHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCS
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHH-HHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCc
Confidence 1233344555555532 222222222 234444443332 11111 1 122557788888876432
Q ss_pred ccce---eeccCCCchhhhHHHHHHHhc--cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhc-CCChhHH
Q 010080 330 TISD---VLVPGHGITDQVIAVLVKCLK--SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLS-TSPFDIK 403 (518)
Q Consensus 330 ~~~~---~i~~G~~~~~~~l~~L~~lL~--~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~ 403 (518)
.... ++. .=..+.+.+...|. ..+..|+..++.++..+...-...+ ...+|.++..|- +-+..--
T Consensus 686 ~~~~~~p~~~----~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~-----~p~lp~~i~~ll~~~~~~e~ 756 (980)
T 3ibv_A 686 RGSEEVAWLA----SFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDM-----LPKVPQLISILLNSIDMNEL 756 (980)
T ss_dssp CC-CCCSHHH----HHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHH-----TTTHHHHHHHHHHHCCTTTH
T ss_pred ccCCCCcHHH----HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhH-----HHHHHHHHHHHHhcCCHHHH
Confidence 2110 110 01245666666665 4567899999999999987654432 246777777763 3345556
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCC---------HHHHHHHHHHHHHHHccCCCCcc
Q 010080 404 KEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSAD---------IEAARLGLQFMELVLRGMPNHEG 474 (518)
Q Consensus 404 ~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d---------~~~~~~~l~~l~~il~~~~~~~~ 474 (518)
...+|.+..++..-. ..- ...+..+.. -++.....+|..++ ..+.+.-+.++..|+...-.
T Consensus 757 ~~fL~l~~qli~~f~---~~~---~~~l~~ll~-~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~--- 826 (980)
T 3ibv_A 757 VDVLSFISQLIHIYK---DNM---MEITNRMLP-TLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFG--- 826 (980)
T ss_dssp HHHHHHHHHHHHHTT---TTS---HHHHHHHHH-HHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCT---
T ss_pred HHHHHHHHHHHHHHH---HHH---HHHHHHHHH-HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCch---
Confidence 678888888876421 111 122222221 13444555665432 22555556677777753211
Q ss_pred hhHHHhh--chH----HHHHHH-hcCCCHHHHHHHHHHHHhhc
Q 010080 475 TKLVERE--DGI----DAMERF-QFHENEDLRNMANGLVDKYF 510 (518)
Q Consensus 475 ~~~ie~~--ggl----~~l~~L-~~~~~~~i~~~a~~il~~~f 510 (518)
...+.+. +-+ ..|... ..++++...+.|..++.++.
T Consensus 827 ~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v 869 (980)
T 3ibv_A 827 SILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMV 869 (980)
T ss_dssp GGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred hhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 1222221 222 233322 23477889999988887754
No 104
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.48 E-value=0.63 Score=44.31 Aligned_cols=188 Identities=15% Similarity=0.141 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHH
Q 010080 270 TTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVL 349 (518)
Q Consensus 270 ~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L 349 (518)
...+.-.| +|.-.+...++-++..+++..+...+ +.++.++....++.|-..+.... -...+ -...+|.+
T Consensus 260 vtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDaks---L~~t~-----L~e~LPFi 329 (619)
T 3c2g_A 260 IIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAKA---LAKTP-----LENILPFL 329 (619)
T ss_dssp HHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCGG---GGTSC-----CTTHHHHH
T ss_pred HHHHHHHH-HHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchHH---Hhhcc-----ccccchHH
Confidence 33344334 44444666788888888888888877 58888888888888877653322 11222 13588988
Q ss_pred HHHhc-cChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcC-------CChhHHHHHHHHHHHhcC------
Q 010080 350 VKCLK-SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLST-------SPFDIKKEVAYVLGNLCV------ 415 (518)
Q Consensus 350 ~~lL~-~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~-------~~~~v~~eA~~aL~nl~~------ 415 (518)
+..+. |++..+.......|||..++........+..|.++.|...+.. .+..-++-||..++|...
T Consensus 330 ~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFL 409 (619)
T 3c2g_A 330 LRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFL 409 (619)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhe
Confidence 88874 6677899999999999999997777778899999999998743 244456778888877532
Q ss_pred ---CCCCCCC----CchhHHHHHHHHHhcCchHHHHHhhccCC------HHHHHHHHHHHHHHHcc
Q 010080 416 ---SPTEGEG----KPKLIQEHLVSLVGRGCLSGFIDLVRSAD------IEAARLGLQFMELVLRG 468 (518)
Q Consensus 416 ---~~~~~~~----~~~~~~~~~~~l~~~g~i~~L~~lL~~~d------~~~~~~~l~~l~~il~~ 468 (518)
-+..+|. .+.+ ++|+..+++..+++.|...|.... -++...+|+....+++.
T Consensus 410 MmWIPm~NGqr~~~G~~E-qQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRT 474 (619)
T 3c2g_A 410 MMWIPTPNGETKTAGPNE-KQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRT 474 (619)
T ss_dssp GGGSCCTTSCCCCCCHHH-HHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTC
T ss_pred eEEEecCCCccccCChHH-HHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcC
Confidence 1211111 1222 356677778889999999887633 25666788887777764
No 105
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.11 Score=48.80 Aligned_cols=183 Identities=14% Similarity=0.127 Sum_probs=115.7
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHH-H-cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcC------ChHH
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPI-ETAL-K-AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAG------KQEE 160 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~-~~~i-~-~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~------~~~~ 160 (518)
.+.|.+=..+.+|+..+.+++........ +..+ . ....+.+-.++. +.+...+..|+.++..++.. ....
T Consensus 17 ~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 17 RLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred hcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 34588899999999999998875432111 1111 1 234555666665 44455666688888887642 1222
Q ss_pred HHHhc-CChHHHHHh-hcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhc
Q 010080 161 TKALL-PALPLLIAH-LGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIK 238 (518)
Q Consensus 161 ~~~v~-~~v~~Lv~l-L~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~ 238 (518)
...++ ..+|.|+.- |.+ ....++..|..++..++...... .. +++.++..+.+.++.++..++-.|..+..
T Consensus 96 ~~~~~~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTS-SRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 33334 478888864 666 68889999888887766422111 11 24566677788889888888777777654
Q ss_pred CCCCC--chhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 239 GPDPK--PATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 239 ~~~~~--~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
...+. +.... ...+++.+..++.+.|++|+..+.-++..+-.
T Consensus 169 ~fg~~~~~~k~~--l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 169 AFGLTNVNVQTF--LPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHTTTTCCHHHH--HHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HhCCCcCCchhH--HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 31111 11111 23566778889999999999999998877765
No 106
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.28 E-value=0.058 Score=49.44 Aligned_cols=144 Identities=14% Similarity=0.150 Sum_probs=101.9
Q ss_pred hhhhHHHHHHHHHHhccCCHHHHHHHHhC-CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC-CchhHHH---HH
Q 010080 357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG-KPKLIQE---HL 431 (518)
Q Consensus 357 ~~~i~~~a~~~Lsnl~~~~~~~~~~li~~-~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~-~~~~~~~---~~ 431 (518)
+.....++..+|..|.. +......++.+ +.+..|...|.+..+.+++.|+..|+-+|..+.+. | -. .+.+ +.
T Consensus 67 ~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~-G~~~-~VL~Al~~~ 143 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPE-DMNE-RVLEAMTER 143 (233)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSS-CHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCC-ChHH-HHHHHHHHH
Confidence 34667888899988865 44556666654 67899999999999999999999998888864311 2 11 1111 11
Q ss_pred HHHHhcCchHHHHHhhc-cCCHHHHHHHHHHHHHHHccCCCCcc----hhHHHhhchHHHHHHHhcCCCHHHHHHHH
Q 010080 432 VSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNMAN 503 (518)
Q Consensus 432 ~~l~~~g~i~~L~~lL~-~~d~~~~~~~l~~l~~il~~~~~~~~----~~~ie~~ggl~~l~~L~~~~~~~i~~~a~ 503 (518)
+..-+..-+.++++.|. ..+.+....++.++..++...++-.. +..+..+|-.+.|+.|...+++++..+-.
T Consensus 144 ~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 144 AEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp HHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence 22223456778888887 46678888999999999887655332 34566788888899999999999876544
No 107
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.17 E-value=0.054 Score=50.44 Aligned_cols=103 Identities=10% Similarity=0.108 Sum_probs=79.7
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG 422 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~ 422 (518)
-++|.|+.-+.+++..+|..+--++-.+..- .+. .+++.+++-+++.+.++|.+++..+..+.... |
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~----G 199 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNA----G 199 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc----C
Confidence 4899999999998888888777766555421 221 26778888899999999999999999886531 2
Q ss_pred CchhHHHHHHHHHhcCch---HHHHHhhccCCHHHHHHHHHHHHHHHccC
Q 010080 423 KPKLIQEHLVSLVGRGCL---SGFIDLVRSADIEAARLGLQFMELVLRGM 469 (518)
Q Consensus 423 ~~~~~~~~~~~l~~~g~i---~~L~~lL~~~d~~~~~~~l~~l~~il~~~ 469 (518)
.+ ....+ +.+..++.+.|..+...|+.++..+.+..
T Consensus 200 ~~-----------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 200 IS-----------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp SG-----------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred CC-----------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 11 23468 99999999999999999999998877654
No 108
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.45 E-value=0.32 Score=48.00 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHhccCCHHHHHHHHhC-CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHH---HHHH
Q 010080 358 RVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQE---HLVS 433 (518)
Q Consensus 358 ~~i~~~a~~~Lsnl~~~~~~~~~~li~~-~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~---~~~~ 433 (518)
..++.+++.||..|... ......++.+ ..+..|+..|.+..+.+++.|+..|+-+|..+.+.||-+. +.+ +...
T Consensus 134 ~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~-VL~Al~~~~~ 211 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNER-VLEAMTERAE 211 (383)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHH-HHHHHHHHHH
Confidence 36778888888888654 4556666654 6789999999999999999999999999886531222111 111 1122
Q ss_pred HHhcCchHHHHHhhcc-CCHHHHHHHHHHHHHHHccCCCCcc----hhHHHhhchHHHHHHHhcCCCHHHHHH
Q 010080 434 LVGRGCLSGFIDLVRS-ADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNM 501 (518)
Q Consensus 434 l~~~g~i~~L~~lL~~-~d~~~~~~~l~~l~~il~~~~~~~~----~~~ie~~ggl~~l~~L~~~~~~~i~~~ 501 (518)
..+..-+.++++.|.. .+.+....++.+|..++...++-.. +..+..+|..+.++.|...+++++..+
T Consensus 212 ~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 212 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 2244568889999987 6788999999999999987665332 345667888888999988888877654
No 109
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.41 E-value=1.7 Score=48.92 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=85.2
Q ss_pred HHHHHHhcCCCChHHHHH-HHHHHHHHhcCChH-HHHHhc-CChHHHHHhhcCCC----CHHHHHHHHHHHHhhhCCChh
Q 010080 128 PVLVQCLAFGSPDEQLLE-AAWCLTNIAAGKQE-ETKALL-PALPLLIAHLGEKS----SSPVAEQCAWALGNVAGEGEE 200 (518)
Q Consensus 128 p~Lv~~L~~~~~~~~~~e-A~~~L~nia~~~~~-~~~~v~-~~v~~Lv~lL~~~~----~~~v~~~a~~~L~nla~d~~~ 200 (518)
+.|-+.+..+.+....+| ++|+++.||..-.+ .-+.++ ..++.|+.+..... ...++...+|++|..+.--..
T Consensus 480 ~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~ 559 (1073)
T 3gjx_A 480 KKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA 559 (1073)
T ss_dssp HHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh
Confidence 333333343333455567 79999999854332 232333 68888888875421 234555567999987542111
Q ss_pred hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHH-----hhchHHHHHHH----hccCChhHHH
Q 010080 201 FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIK-----VDGLLDAILRH----LKRADEELTT 271 (518)
Q Consensus 201 ~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~-----~~~~l~~L~~l----L~~~d~~v~~ 271 (518)
.... -...+..|+..+..+++.++..|+-++..+|..... .++. ....++.++.. ...-+++-..
T Consensus 560 h~~~--L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~----~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~ 633 (1073)
T 3gjx_A 560 HWKF--LKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRR----HFVQVQVGEVMPFIDEILNNINTIICDLQPQQVH 633 (1073)
T ss_dssp CHHH--HHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG----GGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHH
T ss_pred CHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH----HHhhccccccchHHHHHHHHHHHHHHhcCHHHHH
Confidence 1111 122456677777778899999999999999965321 1110 01233333332 2233455566
Q ss_pred HHHHHHHHhhcC
Q 010080 272 EVAWVVVYLSAL 283 (518)
Q Consensus 272 ~a~~~L~~L~~~ 283 (518)
...-+++++...
T Consensus 634 ~lyeav~~vi~~ 645 (1073)
T 3gjx_A 634 TFYEAVGYMIGA 645 (1073)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 667777777764
No 110
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.30 E-value=0.39 Score=47.44 Aligned_cols=142 Identities=14% Similarity=0.158 Sum_probs=100.4
Q ss_pred hhhhHHHHHHHHHHhccCCHHHHHHHHhC-CCHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCC-CchhHHH---HH
Q 010080 357 HRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEG-KPKLIQE---HL 431 (518)
Q Consensus 357 ~~~i~~~a~~~Lsnl~~~~~~~~~~li~~-~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~-~~~~~~~---~~ 431 (518)
+.....+++.||..|... ......++.+ +.+..|...|.+..+.+++.|+..|..+|..+.+. | -. .|.+ +.
T Consensus 71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~-G~~~-~VL~Al~~~ 147 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPE-DMNE-RVLEAMTER 147 (386)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSST-THHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCC-ChHH-HHHHHHHHH
Confidence 346678888899888654 3455566654 67899999999999999999998888888864311 2 11 1111 11
Q ss_pred HHHHhcCchHHHHHhhc-cCCHHHHHHHHHHHHHHHccCCCCcc----hhHHHhhchHHHHHHHhcCCCHHHHHH
Q 010080 432 VSLVGRGCLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEG----TKLVEREDGIDAMERFQFHENEDLRNM 501 (518)
Q Consensus 432 ~~l~~~g~i~~L~~lL~-~~d~~~~~~~l~~l~~il~~~~~~~~----~~~ie~~ggl~~l~~L~~~~~~~i~~~ 501 (518)
...-+..-+.++++.|. ..+.+....++.+|..|+...++-.. +..+..+|-.+.|+.|...+++++..+
T Consensus 148 ~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 148 AEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 12223456777888887 46678888999999999987765332 355677888888999999899888765
No 111
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.16 E-value=0.2 Score=46.64 Aligned_cols=173 Identities=12% Similarity=0.069 Sum_probs=112.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-c-CCHHHHHHHhcCCCChHHHHHHHHHHHHHh----cCChHHHHH
Q 010080 90 YHGKGAMQKRVNALRELRRLLSRFEFPPIETALK-A-GAIPVLVQCLAFGSPDEQLLEAAWCLTNIA----AGKQEETKA 163 (518)
Q Consensus 90 ~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~-~-g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia----~~~~~~~~~ 163 (518)
.+.+.|...++.|+..|.+.++... ..++. . .+++.+.--+. +++..+...++..|..+. ...+.-...
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~----~~~~~~lDll~kw~~lr~~-d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSP----RSLLSNSDLLLKWCTLRFF-ETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCH----HHHHHTHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhCh----HHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 3458899999999999999877532 22332 1 12333332222 334445445555555553 211112222
Q ss_pred hc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCC
Q 010080 164 LL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDP 242 (518)
Q Consensus 164 v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~ 242 (518)
.. -.+|.|+.-+.. +.+.+++.+-.++..++.-.+ ...+++.++.-+.+.+...+..++-.+.++......
T Consensus 129 ea~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 129 EVSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 22 268999999987 788999998888776654211 122456677777888888998888888887754322
Q ss_pred CchhhHHHhhchH---HHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 243 KPATELIKVDGLL---DAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 243 ~~~~~~i~~~~~l---~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
.+ ..++ |.+.+++.+.|..|+..|..++..+-.
T Consensus 201 ~~-------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 201 SP-------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp GG-------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred Cc-------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 21 2467 999999999999999999999886554
No 112
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.03 E-value=0.97 Score=50.96 Aligned_cols=174 Identities=16% Similarity=0.143 Sum_probs=101.8
Q ss_pred HHHHHhcCC---hhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhcc----CChhHHHHHH
Q 010080 202 RNVLLSQGA---LPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKR----ADEELTTEVA 274 (518)
Q Consensus 202 r~~~~~~g~---i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~----~d~~v~~~a~ 274 (518)
.+.+...|- +..+..++.+.+....+ ++++|..+.... .|.. ..+..+..++.+ .++.+...++
T Consensus 346 lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~--~Pt~------e~l~~~~~l~~~~~~~~~~~l~~ta~ 416 (1056)
T 1lsh_A 346 LDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQ--QATR------ESLSYARELLNTSFIRNRPILRKTAV 416 (1056)
T ss_dssp HHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC--CCCH------HHHHHHHHHHTCHHHHTCHHHHHHHH
T ss_pred HHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccC--CCCH------HHHHHHHHHHhCcccccCHHHHHHHH
Confidence 334444443 33445555565544444 445554443332 2333 344556666653 3456667777
Q ss_pred HHHHHhhcC---CchhhhHHHhcCchHHHHHHHc---cCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHH
Q 010080 275 WVVVYLSAL---SNVATSLLVKSGVLQLLVERLA---TSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAV 348 (518)
Q Consensus 275 ~~L~~L~~~---~~~~~~~~~~~g~~~~Lv~lL~---~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~ 348 (518)
-+++.|+.. ....+ ....++.+.+.|. ...+.+-..-++++|||+-.. ..++.
T Consensus 417 La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------------~~l~~ 475 (1056)
T 1lsh_A 417 LGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------------NSIKK 475 (1056)
T ss_dssp HHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------------GGHHH
T ss_pred HHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------------hHHHH
Confidence 777766631 11111 1122344443332 244556678899999998532 26677
Q ss_pred HHHHhcc-------ChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh--cCCChhHHHHHHHHHHHh
Q 010080 349 LVKCLKS-------EHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL--STSPFDIKKEVAYVLGNL 413 (518)
Q Consensus 349 L~~lL~~-------~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL--~~~~~~v~~eA~~aL~nl 413 (518)
|..++.. ....++..|+|+|.+++...+..++ +.|..++ ...++++|..|+..|...
T Consensus 476 l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 476 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 7777742 1246889999999999876655543 4567777 556789999999998764
No 113
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.96 E-value=0.22 Score=45.08 Aligned_cols=179 Identities=13% Similarity=0.037 Sum_probs=112.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080 81 VEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 160 (518)
Q Consensus 81 ~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~ 160 (518)
+.++..-+..+.++ ......+...+++-++ . ...++..-.+.++ +..+.++-|+..|+.. ....
T Consensus 39 ~~~~~~~~~~~~~g-f~~~~~~a~~~~~~~~------~-----~~~~~la~~L~~~-~~deVR~~Av~lLg~~-~~~~-- 102 (240)
T 3l9t_A 39 VARLEKDFSLIEHG-FKEEEQRALTDYKSND------G-----EYIKKLAFLAYQS-DVYQVRMYAVFLFGYL-SKDK-- 102 (240)
T ss_dssp HHHHHHHHTC------CHHHHHHHHHHHHSC------H-----HHHHHHHHHHHTC-SSHHHHHHHHHHHHHT-TTSH--
T ss_pred HHHHHHHHHHhhcc-cHHHHHHHHHHHHhCC------H-----HHHHHHHHHHHhC-cchHHHHHHHHHHHhc-cCcH--
Confidence 34444444333333 3445566666666333 1 1223444445444 4466767788888777 3111
Q ss_pred HHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhC-CChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 010080 161 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAG-EGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKG 239 (518)
Q Consensus 161 ~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~-d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 239 (518)
..++.+...+...++-.|++.++.+++.++. ..++ ..++.+.....+++..++|.|+-.+.--|..
T Consensus 103 -----~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~ 169 (240)
T 3l9t_A 103 -----EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR 169 (240)
T ss_dssp -----HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS
T ss_pred -----HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc
Confidence 2455666534444789999999999999884 3333 1567788888899999999998777554533
Q ss_pred CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh
Q 010080 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK 293 (518)
Q Consensus 240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~ 293 (518)
...+.. ...++|.|-.+..+++.-|+..+.|.|..++..+++-...+++
T Consensus 170 ~~~k~d-----p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 170 PYFKEN-----PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp TTTTTC-----HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhcC-----HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 111111 2357788888888888899999999999999877766555544
No 114
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.74 E-value=1.9 Score=43.15 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHH
Q 010080 180 SSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAIL 259 (518)
Q Consensus 180 ~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~ 259 (518)
+...+.-|+..+.....+.|+..+. +|..++.|+..++..++.+|+..|..+|++ . . ...+..+|+
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~------~--i~kiaDvL~ 106 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-E------N--LPRVADILT 106 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T------C--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h------h--hhhHHHHHH
Confidence 4667777777777777666666554 345667777778889999999999999976 1 1 347788999
Q ss_pred HHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080 260 RHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 260 ~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~ 324 (518)
++|..+++.-...+-++|..|...++ .+.+..+...+. .++..++..++..|..-+
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~-~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQIL-QGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHH-HSCHHHHHHHHHHHHHHG
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHc-ccchHHHHHHHHHHHHHH
Confidence 99999998878888888877776332 233444444443 245667777777775433
No 115
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.83 E-value=0.037 Score=51.03 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=38.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHH
Q 010080 170 LLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELI 249 (518)
Q Consensus 170 ~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i 249 (518)
.|..++.+ +++.|+..++..| ..+.|..++++++..++..++.. + +.
T Consensus 78 ~l~~L~~D-~~~~VR~~aA~~L------------------~~~~L~~ll~D~d~~VR~~aA~~---l-----~~------ 124 (244)
T 1lrv_A 78 ALTPLIRD-SDEVVRRAVAYRL------------------PREQLSALMFDEDREVRITVADR---L-----PL------ 124 (244)
T ss_dssp GGGGGTTC-SSHHHHHHHHTTS------------------CSGGGGGTTTCSCHHHHHHHHHH---S-----CT------
T ss_pred HHHHHccC-cCHHHHHHHHHHC------------------CHHHHHHHHcCCCHHHHHHHHHh---C-----CH------
Confidence 34444444 6677777766532 12456677777777777777663 2 10
Q ss_pred HhhchHHHHHHHhccCChhHHHHHHH
Q 010080 250 KVDGLLDAILRHLKRADEELTTEVAW 275 (518)
Q Consensus 250 ~~~~~l~~L~~lL~~~d~~v~~~a~~ 275 (518)
+.+..++++++..|+..++.
T Consensus 125 ------~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 125 ------EQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp ------GGGGGGTTCSSHHHHHHHHH
T ss_pred ------HHHHHHHcCCCHHHHHHHHH
Confidence 11334456667777776665
No 116
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.42 E-value=1.9 Score=43.15 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=93.4
Q ss_pred CCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCC
Q 010080 308 NSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEA 387 (518)
Q Consensus 308 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~ 387 (518)
++.+...-|...|......-++.. ..++..++.+....+..||+.|...|..+|.+ +++..+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~-----------~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~ki----- 101 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELA-----------DSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRV----- 101 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGH-----------HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHH-----
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH-----------HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhH-----
Confidence 456666777778887776655432 35788899999999999999999999999987 455544
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHHc
Q 010080 388 LALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVLR 467 (518)
Q Consensus 388 i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~ 467 (518)
...|+++|++.+..-...+-++|..+... -..+.+..|++-+..+|..+...++.+|..-+.
T Consensus 102 aDvL~QlLqtdd~~E~~~V~~sL~sllk~------------------Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLVNNALLSIFKM------------------DAKGTLGGLFSQILQGEDIVRERAIKFLSTKLK 163 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHH------------------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc------------------ChHHHHHHHHHHHcccchHHHHHHHHHHHHHHh
Confidence 45899999998876666666666555331 123466777777777888888899998877776
Q ss_pred cCCC
Q 010080 468 GMPN 471 (518)
Q Consensus 468 ~~~~ 471 (518)
..+.
T Consensus 164 ~l~~ 167 (507)
T 3u0r_A 164 TLPD 167 (507)
T ss_dssp GSCT
T ss_pred hcch
Confidence 5443
No 117
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.04 E-value=0.96 Score=46.19 Aligned_cols=243 Identities=17% Similarity=0.122 Sum_probs=147.7
Q ss_pred hHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhc-------cCC---hhHHHHHHHHHHHhh
Q 010080 212 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLK-------RAD---EELTTEVAWVVVYLS 281 (518)
Q Consensus 212 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~-------~~d---~~v~~~a~~~L~~L~ 281 (518)
..|+.-|-++..+++--|+.+|..+.+.......+.......+.-.|+-++. ..| ..|++.++-+|+.+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL- 255 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI- 255 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-
Confidence 3444455577899999999999998864321000000001122222222221 122 25888888888888
Q ss_pred cCCchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhH
Q 010080 282 ALSNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLK 361 (518)
Q Consensus 282 ~~~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~ 361 (518)
..-++. ..++..|+..+ .....+++..++-.|.++ . +.... + .++++.++..|.+.+..|+
T Consensus 256 ~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL---~-DLL~~-L-------d~Vv~aVL~GL~D~DDDVR 316 (800)
T 3oc3_A 256 YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL---K-EFVED-K-------DGLCRKLVSLLSSPDEDIK 316 (800)
T ss_dssp TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT---G-GGCCC-H-------HHHHHHHHHHTTCSSHHHH
T ss_pred HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH---H-HHHHH-H-------HHHHHHHHhhcCCcccHHH
Confidence 433322 34455555444 466788888888888887 1 11111 3 3689999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCC-Chh-HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCc
Q 010080 362 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTS-PFD-IKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGC 439 (518)
Q Consensus 362 ~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~-v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~ 439 (518)
.-|+-+|.-++ .++.+..++ ..+-+.|.+. |-. -.....-.|+.++..+..... ....
T Consensus 317 AVAAetLiPIA--~p~~l~~LL-----~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~-------------dp~L 376 (800)
T 3oc3_A 317 LLSAELLCHFP--ITDSLDLVL-----EKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI-------------PPER 376 (800)
T ss_dssp HHHHHHHTTSC--CSSTHHHHH-----HHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC-------------CSGG
T ss_pred HHHHHHhhhhc--chhhHHHHH-----HHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc-------------ChHH
Confidence 99999999998 333333333 3344444332 211 222334456666654422111 1257
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHH-HHHHhcCCCHHHHHHHHHHHH
Q 010080 440 LSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA-MERFQFHENEDLRNMANGLVD 507 (518)
Q Consensus 440 i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~-l~~L~~~~~~~i~~~a~~il~ 507 (518)
+|.|.-+|...-+.+...+++++..++ + ...+.. .+++.-.++++|.+.+.++..
T Consensus 377 VPRL~PFLRHtITSVR~AVL~TL~tfL----~---------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 377 LKDIFPCFTSPVPEVRTSILNMVKNLS----E---------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGTGGGGTCSSHHHHHHHHHHTTTCC----C---------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHH----h---------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999999999999999988887765 1 112232 366778899999999988775
No 118
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.00 E-value=6.4 Score=37.46 Aligned_cols=236 Identities=12% Similarity=0.138 Sum_probs=147.8
Q ss_pred CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh----hhHHHHHhcCChhHHHh-hhC-CCChhHHHHHHHHHHHhhcC
Q 010080 166 PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE----EFRNVLLSQGALPPLAR-MML-PNKGSTVRTAAWALSNLIKG 239 (518)
Q Consensus 166 ~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~----~~r~~~~~~g~i~~L~~-ll~-~~~~~~~~~a~~~L~nL~~~ 239 (518)
+.+..|+..|.. -+.+-+..+..+++++..... ...+++... |-++. ++. -+++++.-++.-.|.-.++.
T Consensus 78 dll~~Li~~l~~-L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~---peil~~L~~gYe~~diAl~~G~mLRecir~ 153 (341)
T 1upk_A 78 GLLSTLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ---QNILFMLLKGYESPEIALNCGIMLRECIRH 153 (341)
T ss_dssp SHHHHHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC---THHHHHHHHGGGSTTTHHHHHHHHHHHHTS
T ss_pred CHHHHHHHhccc-CCchhhccHHHHHHHHHhcccCCCCchhHHHHcC---HHHHHHHHHhhccchhHhHHHHHHHHHHHh
Confidence 456677777765 577888888888888765432 233444432 22232 222 13556666666667777765
Q ss_pred CCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcC---chHHHHHHHccCCCccchhhh
Q 010080 240 PDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSG---VLQLLVERLATSNSLQLLIPV 316 (518)
Q Consensus 240 ~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g---~~~~Lv~lL~~~~~~~v~~~a 316 (518)
. .....+...+.+-.+...+..++=+|..+|..++..|...........+..+ .+.....+| .+++--++..+
T Consensus 154 e---~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll-~S~NYVTkRQS 229 (341)
T 1upk_A 154 E---PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVTKRQS 229 (341)
T ss_dssp H---HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHHHHHH
T ss_pred H---HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh-cCCcchhHHHH
Confidence 2 2333444556666777788888889999999999988775544444444432 455566666 57777788899
Q ss_pred hhhhhhhhcCCCcc--cceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccC---CHHHHHHHHhC--CCHH
Q 010080 317 LRSLGNLVAGDSST--ISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG---SVEHKQLIHSS--EALA 389 (518)
Q Consensus 317 l~~L~nl~~~~~~~--~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~---~~~~~~~li~~--~~i~ 389 (518)
++.||.+....... ....+. +..-+..++.+|.+.+..|+.+|..+.--.++. +++....++.. .++.
T Consensus 230 lKLLgelLldr~N~~vM~~Yis-----~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~ 304 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYIS-----KPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIE 304 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHhC-----CHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHH
Confidence 99999998664321 122232 246789999999999999999999998877774 23333333332 3444
Q ss_pred HHHHHhcC--CChhHHHHHHHHHHHhc
Q 010080 390 LLLHLLST--SPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 390 ~Li~lL~~--~~~~v~~eA~~aL~nl~ 414 (518)
.|-+...+ .|.....|=.+.|..|.
T Consensus 305 fl~~f~~d~~eDeqF~dEK~~lI~~I~ 331 (341)
T 1upk_A 305 FLSKFQNDRTEDEQFNDEKTYLVKQIR 331 (341)
T ss_dssp HHHHTTTTC-CCSHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcchhhHHHHHHHHHHHHH
Confidence 44444433 24455555555554443
No 119
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.89 E-value=2.6 Score=39.90 Aligned_cols=183 Identities=13% Similarity=0.014 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhcC------ChHH
Q 010080 97 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALLP------ALPL 170 (518)
Q Consensus 97 ~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~~------~v~~ 170 (518)
+..+.++..+...++....+.. ....+..+..+++.+. +..+-++-.+.-.+. .+.....+.+ .+..
T Consensus 79 ~~el~~L~~l~~~l~~~s~~~~----~~~~l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~ 151 (304)
T 3ebb_A 79 EDDLILLEKILSLICNSSSEKP----TVQQLQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSH 151 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCC----CHHHHHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcc----chHHHHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHH
Confidence 4556666666665553221111 1123455555554332 233445555555443 2222222221 2223
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhc--CChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhH
Q 010080 171 LIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQ--GALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATEL 248 (518)
Q Consensus 171 Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 248 (518)
++..+.+...+..+-.++++++|+.. ++..|+.++.. .+++.+...+.+++..++..++..+.|++-........+.
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 44455443456678999999999988 66788877753 2334444444456788888999999998753100011121
Q ss_pred HHhhchHHHHHHHhc-cCChhHHHHHHHHHHHhhcCCchhhh
Q 010080 249 IKVDGLLDAILRHLK-RADEELTTEVAWVVVYLSALSNVATS 289 (518)
Q Consensus 249 i~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~ 289 (518)
...++..+..++. ..|+|....++-+|++|...+.+..+
T Consensus 231 --~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~ 270 (304)
T 3ebb_A 231 --KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQ 270 (304)
T ss_dssp --HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHH
Confidence 1235555556665 45789999999999999976543333
No 120
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.88 E-value=7.1 Score=44.66 Aligned_cols=304 Identities=13% Similarity=0.090 Sum_probs=161.4
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhc-CCCChHHHHHHHHHHHHHhcC--
Q 010080 82 EELKSAVAYHGKG--AMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA-FGSPDEQLLEAAWCLTNIAAG-- 156 (518)
Q Consensus 82 ~~l~~~l~~~~s~--~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~-~~~~~~~~~eA~~~L~nia~~-- 156 (518)
.++.++++...++ |.+.+.+|-..|.++ ... | ...+.+...|. ...+...++-|+..|.|....
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~-~~~--p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W 79 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEF-KEK--C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRW 79 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHH-HHH--C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHH-HhC--c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 4455555544344 677788888888774 221 1 13444444444 334455666688888887632
Q ss_pred ---ChHHHHHhcC-ChHHHHHhhcCC--CCHHHHHHHHHHHHhhhCCC-hhhHHHHHhcCChhHHHhhhCCCChhHHHHH
Q 010080 157 ---KQEETKALLP-ALPLLIAHLGEK--SSSPVAEQCAWALGNVAGEG-EEFRNVLLSQGALPPLARMMLPNKGSTVRTA 229 (518)
Q Consensus 157 ---~~~~~~~v~~-~v~~Lv~lL~~~--~~~~v~~~a~~~L~nla~d~-~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a 229 (518)
+.+.+..+.+ .+..+...-... ....++.+.+.++..|+... +.. =.+.++.|+.++++ +......+
T Consensus 80 ~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~-~~~~~e~~ 153 (1204)
T 3a6p_A 80 NGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ-GETQTELV 153 (1204)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT-CHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC-CHHHHHHH
Confidence 3444444443 444444332111 35789999999999887521 110 12456677777765 44557778
Q ss_pred HHHHHHhhcC---CCC-Cchhh-----HHH--hhchHHHHHHHhcc-------------------CChhHHHHHHHHHHH
Q 010080 230 AWALSNLIKG---PDP-KPATE-----LIK--VDGLLDAILRHLKR-------------------ADEELTTEVAWVVVY 279 (518)
Q Consensus 230 ~~~L~nL~~~---~~~-~~~~~-----~i~--~~~~l~~L~~lL~~-------------------~d~~v~~~a~~~L~~ 279 (518)
+.+|..|+.. ... ...+. .+. ...+++.+..++.. ++.++...++.++..
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 8888888742 111 01110 111 01333444444432 123456666667665
Q ss_pred hhcCCchhhhHHHhcC--chHHHHHHHccCCCccchhhhhhhhhhhhcCCC--cccceeeccCCCchhhhHHHHHHHhc-
Q 010080 280 LSALSNVATSLLVKSG--VLQLLVERLATSNSLQLLIPVLRSLGNLVAGDS--STISDVLVPGHGITDQVIAVLVKCLK- 354 (518)
Q Consensus 280 L~~~~~~~~~~~~~~g--~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~--~~~~~~i~~G~~~~~~~l~~L~~lL~- 354 (518)
....- ....+.+.. .++.+..++ .+++++..|+.||..++.... .....++.. +....+..++....
T Consensus 234 ~l~Wi--~~~~i~~~~~~ll~~l~~~l---~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~---l~~~~l~~l~~~~~~ 305 (1204)
T 3a6p_A 234 YIDWV--SMSHITAENCKLLEILCLLL---NEQELQLGAAECLLIAVSRKGKLEDRKPLMVL---FGDVAMHYILSAAQT 305 (1204)
T ss_dssp TTTTS--CHHHHHTTTSHHHHHHHHGG---GCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGG---GSHHHHHHHHHHHHT
T ss_pred HHhcc--CHHHHHhccchHHHHHHHHc---CCHHHHHHHHHHHHHHHhCCCChhhHHHHHHH---HhhHHHHHHHHHhhc
Confidence 44322 233344432 566666544 357788999999999986432 111112210 01122334444431
Q ss_pred -------cChhhhHHHHHHHHHHhccCCHHHHHHHHhC-----------CCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 355 -------SEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-----------EALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 355 -------~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~-----------~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
..+..+.+..|.++..+.. . ...++.. ++++.++.++.+++..+-..++..-..+.
T Consensus 306 ~~~~~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll 379 (1204)
T 3a6p_A 306 ADGGGLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALF 379 (1204)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHH
Confidence 2245677778888877752 2 2222221 35777777778887777776664333343
No 121
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=92.45 E-value=2.2 Score=38.51 Aligned_cols=144 Identities=10% Similarity=0.019 Sum_probs=94.3
Q ss_pred hHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHh-ccCChhHHHHHHHHHHHhhc-CCchhhh
Q 010080 212 PPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHL-KRADEELTTEVAWVVVYLSA-LSNVATS 289 (518)
Q Consensus 212 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~-~~~~~~~ 289 (518)
+....|.+++..+++-.|+..|..+ . + ....++.+...+ ..+.=.|+..++-++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~---~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S---K--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T---T--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c---C--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 3334455666678888888877776 2 1 135667777633 33344677777888887774 2222
Q ss_pred HHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHH
Q 010080 290 LLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLS 369 (518)
Q Consensus 290 ~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Ls 369 (518)
..++.+.... .+++..++..|.-.+..-+......+. ..-++|.|-.+..+++..||+..+|.|.
T Consensus 139 -----~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~~~~k~d---------p~~ll~iL~~L~~D~s~yVrKSVan~Lr 203 (240)
T 3l9t_A 139 -----KALPIIDEWL-KSSNLHTRRAATEGLRIWTNRPYFKEN---------PNEAIRRIADLKEDVSEYVRKSVGNALR 203 (240)
T ss_dssp -----TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGSTTTTTC---------HHHHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhccchhhcC---------HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 1456666666 578888887766554332222111111 1247888888888899999999999999
Q ss_pred HhccCCHHHHHHHHhC
Q 010080 370 NIAAGSVEHKQLIHSS 385 (518)
Q Consensus 370 nl~~~~~~~~~~li~~ 385 (518)
.++..+|+.+..+++.
T Consensus 204 D~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 204 DISKKFPDLVKIELKN 219 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHhhhCHHHHHHHHHH
Confidence 9999999887776653
No 122
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=90.55 E-value=14 Score=36.22 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcC----C------CChHHHHHHHHHHHHHhcCChHHHHHhc-
Q 010080 97 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----G------SPDEQLLEAAWCLTNIAAGKQEETKALL- 165 (518)
Q Consensus 97 ~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~----~------~~~~~~~eA~~~L~nia~~~~~~~~~v~- 165 (518)
...+..+..|+..|...+...++.++ .+++..|+.+|.. . .....+.+++.||..+... ......++
T Consensus 82 ~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~ 159 (383)
T 3eg5_B 82 MHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLE 159 (383)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHc
Confidence 34567789999988887777778887 6678888888852 1 1235567789999988744 34556666
Q ss_pred --CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-hh-HHHHH----------hcCChhHHHhhhCCC-ChhHHHHHH
Q 010080 166 --PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF-RNVLL----------SQGALPPLARMMLPN-KGSTVRTAA 230 (518)
Q Consensus 166 --~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~~-r~~~~----------~~g~i~~L~~ll~~~-~~~~~~~a~ 230 (518)
..+..+...|.+ +++.++..++..|+.+|.-+. +. ...++ +..-..+++..+.+. +.+...+++
T Consensus 160 ~~~~i~~l~~~L~s-~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m 238 (383)
T 3eg5_B 160 TEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL 238 (383)
T ss_dssp CSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH
T ss_pred ChHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHH
Confidence 378888888876 789999999999999886442 22 22222 334577788888764 555555554
Q ss_pred HHHHHhhcC
Q 010080 231 WALSNLIKG 239 (518)
Q Consensus 231 ~~L~nL~~~ 239 (518)
-.+-.++.+
T Consensus 239 ~lIN~li~~ 247 (383)
T 3eg5_B 239 QLINALITP 247 (383)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 444445544
No 123
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.35 E-value=9.9 Score=34.29 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcC----CC------ChHHHHHHHHHHHHHhcCChHHHHHhc-
Q 010080 97 QKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----GS------PDEQLLEAAWCLTNIAAGKQEETKALL- 165 (518)
Q Consensus 97 ~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~----~~------~~~~~~eA~~~L~nia~~~~~~~~~v~- 165 (518)
+...+-+..|+..|...+...++.+ ..+++..|+.+|.. .. ....+.+++.||..+... ......++
T Consensus 16 ~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~ 93 (233)
T 2f31_A 16 MHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLE 93 (233)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHT
T ss_pred HHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHc
Confidence 3345667788877777666667777 46778888888752 11 234567799999988754 34555665
Q ss_pred --CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-hh-HHHHH----------hcCChhHHHhhhCC-CChhHHHHHH
Q 010080 166 --PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF-RNVLL----------SQGALPPLARMMLP-NKGSTVRTAA 230 (518)
Q Consensus 166 --~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~~-r~~~~----------~~g~i~~L~~ll~~-~~~~~~~~a~ 230 (518)
+++..+...|.+ +++.++..++..|+.+|.-+. +. ...++ +..-..+++..+.+ .+.+...+++
T Consensus 94 ~~~~i~~l~~~L~s-~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m 172 (233)
T 2f31_A 94 TEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL 172 (233)
T ss_dssp SSSHHHHHHTTCCT-TSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH
T ss_pred CcHHHHHHHHHhCC-CCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHH
Confidence 378888888876 789999999988888876432 12 22222 23345567766663 3455555555
Q ss_pred HHHHHhhcC
Q 010080 231 WALSNLIKG 239 (518)
Q Consensus 231 ~~L~nL~~~ 239 (518)
-.+-.+..+
T Consensus 173 ~lIN~li~~ 181 (233)
T 2f31_A 173 QLINALITP 181 (233)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 544455544
No 124
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=89.83 E-value=2.6 Score=38.43 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=92.8
Q ss_pred HHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC-----ChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHH
Q 010080 184 AEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN-----KGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAI 258 (518)
Q Consensus 184 ~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L 258 (518)
...|+-.|-.+|. .++.|..+++.++.-.|-.+|... -..++-.+...++.|.+.+++ ....++...+++|..
T Consensus 73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~-eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQ-EVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCH-HHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcH-HHHHHHHhhhHHHHH
Confidence 4566667777887 789999999998877777888733 256777888889999976543 333455578999999
Q ss_pred HHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHh--------cCchHHHHHHHccCCCccchhhhhhhhhhhh
Q 010080 259 LRHLKRADEELTTEVAWVVVYLSALSNVATSLLVK--------SGVLQLLVERLATSNSLQLLIPVLRSLGNLV 324 (518)
Q Consensus 259 ~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--------~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~ 324 (518)
++.+..+++--..-|...+..+.. ++.....+.. ..++..+|..+...+++.+...+++|--.++
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~-dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILL-DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHH-SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred HHHHhhccHHHHHHHHHHHHHHhc-cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 999999998888888887776664 2333333322 1244455554444455555555555555554
No 125
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=89.61 E-value=12 Score=34.26 Aligned_cols=198 Identities=11% Similarity=0.046 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChH
Q 010080 80 AVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQE 159 (518)
Q Consensus 80 ~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~ 159 (518)
+-+++.+++..-+....+.++..+...++++-... |. ++ ..++|.++.+-. +...+++.-.+..|...+....+
T Consensus 13 ~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~d-p~---ll-~~~l~~il~~~~-~~~~~vrk~~~~Fi~e~~~~k~~ 86 (257)
T 3gs3_A 13 ARAKVVDWCNELVIASPSTKCELLAKVQETVLGSC-AE---LA-EEFLESVLSLAH-DSNMEVRKQVVAFVEQVCKVKVE 86 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTT-GG---GH-HHHHHHHHGGGG-CSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccC-Hh---HH-HHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHH
Confidence 44677788875555334799999999999766643 32 12 345677777643 34456666567777777643332
Q ss_pred HHHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhh--------CCCh------hhHHHHHhcCChhHHHhhhCCCChhH
Q 010080 160 ETKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVA--------GEGE------EFRNVLLSQGALPPLARMMLPNKGST 225 (518)
Q Consensus 160 ~~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla--------~d~~------~~r~~~~~~g~i~~L~~ll~~~~~~~ 225 (518)
.+...++.|..+|.. +++.|...++.+.+++- ..+. ..-+.+. ..=..+++++++.+..+
T Consensus 87 ---l~~~~l~~L~~Ll~d-~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gv 160 (257)
T 3gs3_A 87 ---LLPHVINVVSMLLRD-NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGI 160 (257)
T ss_dssp ---GHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHH
T ss_pred ---HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcch
Confidence 222477888888876 78999999998888763 2111 1111111 11223555666777888
Q ss_pred HHHHHHHHHHhh--cCCC-CC-------ch------------hhHH--HhhchHHHHHHHhccC--ChhHHHHHHHHHHH
Q 010080 226 VRTAAWALSNLI--KGPD-PK-------PA------------TELI--KVDGLLDAILRHLKRA--DEELTTEVAWVVVY 279 (518)
Q Consensus 226 ~~~a~~~L~nL~--~~~~-~~-------~~------------~~~i--~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~ 279 (518)
+-.+...+..+. .... +. .. ...+ ...+.+..|+.++.+. ++.....++.+|+.
T Consensus 161 kl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~ 240 (257)
T 3gs3_A 161 RTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCT 240 (257)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence 877777666533 2110 00 00 0111 1234566666665543 23356677777777
Q ss_pred hhcCCchhhh
Q 010080 280 LSALSNVATS 289 (518)
Q Consensus 280 L~~~~~~~~~ 289 (518)
|+...+....
T Consensus 241 Iak~RP~~~~ 250 (257)
T 3gs3_A 241 IAKMRPIFMG 250 (257)
T ss_dssp HHHHCGGGHH
T ss_pred HHHhCcHHHH
Confidence 7765554433
No 126
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=89.59 E-value=19 Score=41.04 Aligned_cols=292 Identities=16% Similarity=0.119 Sum_probs=154.4
Q ss_pred ChHHHHHHHHHHHHHhcCChHHHHHhcCChHHHHHhhc-CCCCHHHHHHHHHHHHhhhCC-----ChhhHHHHHhcCChh
Q 010080 139 PDEQLLEAAWCLTNIAAGKQEETKALLPALPLLIAHLG-EKSSSPVAEQCAWALGNVAGE-----GEEFRNVLLSQGALP 212 (518)
Q Consensus 139 ~~~~~~eA~~~L~nia~~~~~~~~~v~~~v~~Lv~lL~-~~~~~~v~~~a~~~L~nla~d-----~~~~r~~~~~~g~i~ 212 (518)
++..+.+|-..|..+-... ++.+.+...|. .+.+..++..|+..|.|.... +++.|..+. ..++.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~ 96 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVME 96 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHH
Confidence 3445556766676664321 13344444443 346789999999999987532 233333333 22333
Q ss_pred HHHhhhCC---CChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcC---C--
Q 010080 213 PLARMMLP---NKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSAL---S-- 284 (518)
Q Consensus 213 ~L~~ll~~---~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~-- 284 (518)
.+...... ....++..++-+++.++...-|. .. .++++.|++++.. ++.....++.+|..|+.. .
T Consensus 97 ~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~ 169 (1204)
T 3a6p_A 97 LIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-HW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQT 169 (1204)
T ss_dssp HHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-TC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-cc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccc
Confidence 33333211 34677788888888888653231 11 3678888888865 445566677778777641 1
Q ss_pred --chhhh----HHHhc--CchHHHHHHHccC------------------CCccchhhhhhhhhhhhcCCCcccceeeccC
Q 010080 285 --NVATS----LLVKS--GVLQLLVERLATS------------------NSLQLLIPVLRSLGNLVAGDSSTISDVLVPG 338 (518)
Q Consensus 285 --~~~~~----~~~~~--g~~~~Lv~lL~~~------------------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~G 338 (518)
..... .+.+. .+++.+...|.++ .+..+...++.++.+...--+. ..+++.
T Consensus 170 ~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~- 246 (1204)
T 3a6p_A 170 LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAE- 246 (1204)
T ss_dssp SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhc-
Confidence 01111 11111 2233333333211 1223556677777766543221 111110
Q ss_pred CCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCC--HHHHHHHHhC---CCHHHHHHHhc--------CCChhHHHH
Q 010080 339 HGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGS--VEHKQLIHSS---EALALLLHLLS--------TSPFDIKKE 405 (518)
Q Consensus 339 ~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~--~~~~~~li~~---~~i~~Li~lL~--------~~~~~v~~e 405 (518)
...+++.+..++. ++.++..|+-+|..|+... ++....++.. ..+..++..+. ..+.++.+.
T Consensus 247 ---~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~ 321 (1204)
T 3a6p_A 247 ---NCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR 321 (1204)
T ss_dssp ---TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred ---cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence 0136777776655 4678999999999998743 3433333321 01234444442 123566777
Q ss_pred HHHHHHHhcCCCCCCCCCchhHHHHHHHHHh-----------cCchHHHHHhhccCCHHHHHHHHHHHHHHHcc
Q 010080 406 VAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG-----------RGCLSGFIDLVRSADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 406 A~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~-----------~g~i~~L~~lL~~~d~~~~~~~l~~l~~il~~ 468 (518)
.+..+..+.. +...++. .++++.++.++..++..+...++.+-..+++.
T Consensus 322 l~~ll~~lg~--------------~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 322 LCQVLCALGN--------------QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHH--------------HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH--------------HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 7777766641 1112211 13466666666666766666666666656554
No 127
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=87.67 E-value=0.6 Score=38.57 Aligned_cols=77 Identities=10% Similarity=0.173 Sum_probs=51.4
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC--------CHHHHHHHHHHHHhhc
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--------NEDLRNMANGLVDKYF 510 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~--------~~~i~~~a~~il~~~f 510 (518)
++..|..-|..+++.++.++|.+|..++..+.......+-.....+..+.+.+..+ +..|+.+|.++++-.|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 56777888888999999999999999987654211111222222333333333322 3689999999999999
Q ss_pred CccCC
Q 010080 511 GEDYG 515 (518)
Q Consensus 511 ~~~~~ 515 (518)
+++..
T Consensus 130 d~~~~ 134 (140)
T 1vdy_A 130 SEENG 134 (140)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 88764
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.62 E-value=3.4 Score=46.50 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=61.4
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC-------CChhHHHHHHHHHHHhhcCC
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP-------NKGSTVRTAAWALSNLIKGP 240 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nL~~~~ 240 (518)
...|...+.+ .+.+-+..++.+|||+.. + ..++.|..++.. ....++..|+|+|..+....
T Consensus 442 ~~~l~~~~~~-~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~ 509 (1056)
T 1lsh_A 442 HDLLSQSSDR-AKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD 509 (1056)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC
T ss_pred HHHHHHHHhc-CChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc
Confidence 3344444555 467778899999999975 2 246667777642 13567789999999997431
Q ss_pred CCCchhhHHHhhchHHHHHHHhc--cCChhHHHHHHHHHHH
Q 010080 241 DPKPATELIKVDGLLDAILRHLK--RADEELTTEVAWVVVY 279 (518)
Q Consensus 241 ~~~~~~~~i~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~ 279 (518)
| ..+-+.++++.. ..+++++..|++.|..
T Consensus 510 -p---------~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 510 -P---------RKVQEIVLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp -H---------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred -h---------HHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 1 134456777774 5678999999998864
No 129
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=87.49 E-value=7.8 Score=35.35 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=71.1
Q ss_pred hccCCHHHHHHHHhCCCHHHHHHHhcCCC-----hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHH
Q 010080 371 IAAGSVEHKQLIHSSEALALLLHLLSTSP-----FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFID 445 (518)
Q Consensus 371 l~~~~~~~~~~li~~~~i~~Li~lL~~~~-----~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~ 445 (518)
..+..++....++++++.-.|.-.|...+ ..+|-.+..+|+.++... + .+.+.++++.+++|....
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~d-----d----~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTD-----E----QEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGC-----C----HHHHHHHHHTTHHHHHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccC-----c----HHHHHHHHhhhHHHHHHH
Confidence 33456688889999988777777775433 357888999999998642 2 477899999999999999
Q ss_pred hhccCCHHHHHHHHHHHHHHHc
Q 010080 446 LVRSADIEAARLGLQFMELVLR 467 (518)
Q Consensus 446 lL~~~d~~~~~~~l~~l~~il~ 467 (518)
.++.++.-.+.+|.-.++.|+.
T Consensus 153 ime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhc
Confidence 9999999888899899999985
No 130
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=87.00 E-value=2.4 Score=40.14 Aligned_cols=121 Identities=13% Similarity=0.039 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHH--cCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCC-----hHHHHHhcC
Q 010080 94 GAMQKRVNALRELRRLLSRFEFPPIETALK--AGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGK-----QEETKALLP 166 (518)
Q Consensus 94 ~~~~~~~~a~~~lr~lls~~~~~~~~~~i~--~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~-----~~~~~~v~~ 166 (518)
..+.-++-+++.+.++.+.... .+.++. ..+++.+...+.. .+..++.-++..+.|+|... .+... .
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g--~~~l~~~~~~il~~~~~~~~~-~nknl~iA~ATl~~NlAv~~~~~~~~~~~~---~ 233 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAG--QKLMMSQRESLMSHAIELKSG-SNKNIHIALATLALNYSVCFHKDHNIEGKA---Q 233 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHH--HHHHHHTHHHHHHHHHGGGSS-CCHHHHHHHHHHHHHHHHHHHHSCCHHHHH---H
T ss_pred CChHHHHHHHHHHHHccCCchh--HHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhhcCCchHHH---H
Confidence 4567789999999998776532 233332 3345555555443 34567677889999998421 11111 1
Q ss_pred ChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC
Q 010080 167 ALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP 220 (518)
Q Consensus 167 ~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~ 220 (518)
.+..+.+++....+.+....++-+||++...+.+.++.....|+-..+-+....
T Consensus 234 ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 234 CLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 344445555555688999999999999998777777666666655555555544
No 131
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=85.52 E-value=0.3 Score=44.92 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=45.6
Q ss_pred hhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhc
Q 010080 174 HLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDG 253 (518)
Q Consensus 174 lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~ 253 (518)
++.+ +++.++..++..| ....|..++++++..++..++..| +.
T Consensus 58 ll~d-~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L--------~~---------- 100 (244)
T 1lrv_A 58 YLAD-PFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL--------PR---------- 100 (244)
T ss_dssp GTTC-SSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS--------CS----------
T ss_pred HhcC-CCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC--------CH----------
Confidence 3444 7899998888743 133477788889999999988642 11
Q ss_pred hHHHHHHHhccCChhHHHHHHHH
Q 010080 254 LLDAILRHLKRADEELTTEVAWV 276 (518)
Q Consensus 254 ~l~~L~~lL~~~d~~v~~~a~~~ 276 (518)
+.|..++.+++..|+..++..
T Consensus 101 --~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 101 --EQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp --GGGGGTTTCSCHHHHHHHHHH
T ss_pred --HHHHHHHcCCCHHHHHHHHHh
Confidence 235677888999999888774
No 132
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=80.10 E-value=37 Score=33.13 Aligned_cols=169 Identities=16% Similarity=0.125 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcC----CC------ChHHHHHHHHHHHHHhcCChHHHHHhc--
Q 010080 98 KRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAF----GS------PDEQLLEAAWCLTNIAAGKQEETKALL-- 165 (518)
Q Consensus 98 ~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~----~~------~~~~~~eA~~~L~nia~~~~~~~~~v~-- 165 (518)
.....+..|+..|...+-..+..++ .+++..|+.+|.. .. ....+.+++.||..+.... .....++
T Consensus 21 ~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~-~Gl~~vl~~ 98 (386)
T 2bnx_A 21 HLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTMLET 98 (386)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSH-HHHHHHHHS
T ss_pred HHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCH-HHHHHHHcC
Confidence 3455678888878777666677776 5677778887752 11 2345677999999888543 3455555
Q ss_pred -CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCCh-hh-HHHHH----------hcCChhHHHhhhCC-CChhHHHHHHH
Q 010080 166 -PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGE-EF-RNVLL----------SQGALPPLARMMLP-NKGSTVRTAAW 231 (518)
Q Consensus 166 -~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~-~~-r~~~~----------~~g~i~~L~~ll~~-~~~~~~~~a~~ 231 (518)
.++..+...|.+ +++.++..++..|+.+|.-+. .. ...++ +..-+.+++..+.. .+.+...+++-
T Consensus 99 ~~~i~~l~~sL~s-~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~ 177 (386)
T 2bnx_A 99 EEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQ 177 (386)
T ss_dssp SSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHH
T ss_pred cHHHHHHHHHhCC-CCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHH
Confidence 478888888876 789999999988888876432 11 22222 23355667776663 35565555555
Q ss_pred HHHHhhcCCCCCchh-----hHHHhhchHHHHHHHhccCChhHH
Q 010080 232 ALSNLIKGPDPKPAT-----ELIKVDGLLDAILRHLKRADEELT 270 (518)
Q Consensus 232 ~L~nL~~~~~~~~~~-----~~i~~~~~l~~L~~lL~~~d~~v~ 270 (518)
.+-.+..+. +.... .-+...|+.+.+-++=..+++++.
T Consensus 178 lIN~lv~~~-~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 178 LINALITPA-EELDFRVHIRSELMRLGLHQVLQELREIENEDMK 220 (386)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHCCC-CCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence 555566543 22211 111234666655555444555443
No 133
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=78.38 E-value=52 Score=32.03 Aligned_cols=193 Identities=11% Similarity=0.089 Sum_probs=111.2
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHH
Q 010080 82 EELKSAVAYHGK-GAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEE 160 (518)
Q Consensus 82 ~~l~~~l~~~~s-~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~ 160 (518)
+.+.+++..-+. .+ +.++..+..+++++-+. +|. ++ ..++|.+++|-... +.+++.-.+..|...+....+
T Consensus 25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~-dps---Ll-~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~e- 96 (386)
T 3o2t_A 25 ERVVDLLNQAALITN-DSKITVLKQVQELIINK-DPT---LL-DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIE- 96 (386)
T ss_dssp HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTT-CGG---GG-GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGG-
T ss_pred HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhcc-CHH---HH-HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHH-
Confidence 455666653222 33 57999999999975543 342 22 67888888887644 355666566666666643322
Q ss_pred HHHhcCChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCC---------------hhHHHhhhCCCChhH
Q 010080 161 TKALLPALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGA---------------LPPLARMMLPNKGST 225 (518)
Q Consensus 161 ~~~v~~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~---------------i~~L~~ll~~~~~~~ 225 (518)
.+...++.|..+|.. .++.|...++.+.+++-. ..=..+...+. -..++.++.+.+..+
T Consensus 97 --l~~~~l~~L~~LL~d-~d~~V~K~~I~~~tslYp---l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GV 170 (386)
T 3o2t_A 97 --LLLKLIANLNMLLRD-ENVNVVKKAILTMTQLYK---VALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGI 170 (386)
T ss_dssp --GHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHH---HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHH
T ss_pred --HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH---HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcch
Confidence 223467788888876 789999999988888742 11112222222 223555566777888
Q ss_pred HHHHHHHHHHhh--cCC---CCC--------chh------------hHH--HhhchHHHHHHHhccC--ChhHHHHHHHH
Q 010080 226 VRTAAWALSNLI--KGP---DPK--------PAT------------ELI--KVDGLLDAILRHLKRA--DEELTTEVAWV 276 (518)
Q Consensus 226 ~~~a~~~L~nL~--~~~---~~~--------~~~------------~~i--~~~~~l~~L~~lL~~~--d~~v~~~a~~~ 276 (518)
+-.++..+-.+. ... ++. ... ..+ ...+.+..|+.++..+ ++-....++.+
T Consensus 171 rl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lns 250 (386)
T 3o2t_A 171 RTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGS 250 (386)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHH
Confidence 777777665533 221 110 000 000 1235666677777643 33455667777
Q ss_pred HHHhhcCCchhh
Q 010080 277 VVYLSALSNVAT 288 (518)
Q Consensus 277 L~~L~~~~~~~~ 288 (518)
|+.|+...+...
T Consensus 251 La~Iak~RP~~~ 262 (386)
T 3o2t_A 251 LANIARQRPMFM 262 (386)
T ss_dssp HHHHHHHSGGGH
T ss_pred HHHHHHhcHHHH
Confidence 888876555443
No 134
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=78.31 E-value=27 Score=32.73 Aligned_cols=131 Identities=12% Similarity=0.110 Sum_probs=74.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHh--cCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh--c
Q 010080 362 KEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLL--STSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVG--R 437 (518)
Q Consensus 362 ~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL--~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~--~ 437 (518)
..|.-.|--++ +.-++=-.|+++. .+.|-+++ ...++.++..|+.+|+.+..+ +|.. +..+.+ -
T Consensus 46 e~aLD~L~ElS-HDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRN------NP~A----l~~V~~~~p 113 (315)
T 3qml_C 46 EDSFDRIMEFA-HDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRN------NPPV----VEFINESFP 113 (315)
T ss_dssp HHHHHHHGGGT-TSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT------CHHH----HHHHHHHCT
T ss_pred HHHHHHHHHhh-hhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHcc------CHHH----HHHHHHhCh
Confidence 34444444443 3334434454432 33333333 445677899999999888764 4533 333333 3
Q ss_pred CchHHHHHhhcc-------CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC--CHHHHHHHHHHHHh
Q 010080 438 GCLSGFIDLVRS-------ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMANGLVDK 508 (518)
Q Consensus 438 g~i~~L~~lL~~-------~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~--~~~i~~~a~~il~~ 508 (518)
..+..+|.-|.. ...-+++-.|.+|..|+..... + ...|++.|.++..-+ .++++.++..|+..
T Consensus 114 ~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~------F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d 186 (315)
T 3qml_C 114 NFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED------L-PIYSTVVLQNVYERNNKDKQLQIKVLELISK 186 (315)
T ss_dssp THHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT------C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh------h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 566666655443 2334555666777766643211 1 133555555554444 99999999999999
Q ss_pred hcC
Q 010080 509 YFG 511 (518)
Q Consensus 509 ~f~ 511 (518)
+|.
T Consensus 187 ~f~ 189 (315)
T 3qml_C 187 ILK 189 (315)
T ss_dssp HHH
T ss_pred Hcc
Confidence 994
No 135
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=78.07 E-value=25 Score=29.19 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=64.9
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcC------CChhHHHHHHHHHHHhcCC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLST------SPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~------~~~~v~~eA~~aL~nl~~~ 416 (518)
.++..|..-+.+.++.++..|+-+|-.+... +......+....++..|+.++.. .+..|+..++..|..-+..
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 5778888888999999999999888888764 44444556566788889999863 5778999888877766543
Q ss_pred CCCCCCCchhHHHHHHHHHhcCch
Q 010080 417 PTEGEGKPKLIQEHLVSLVGRGCL 440 (518)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~g~i 440 (518)
. ++.|+ +.+-.+.|...|++
T Consensus 128 f---~~~p~-i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 128 L---PEEVK-IAEAYQMLKKQGIV 147 (149)
T ss_dssp C---TTCHH-HHHHHHHHHHTTCC
T ss_pred h---CCCch-HHHHHHHHHHCcCc
Confidence 1 23343 33444555566655
No 136
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=76.79 E-value=31 Score=33.61 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=85.3
Q ss_pred chhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHH
Q 010080 312 LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL 391 (518)
Q Consensus 312 v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~L 391 (518)
.+...|+-+..++...+.. ++ .++++.++.+-...+..+|+..+-.|.-.+....+..- .+++.|
T Consensus 41 ~Kl~~L~q~~EL~l~~dps---Ll-------~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L 105 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT---LL-------DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANL 105 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG---GG-------GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHhccCHH---HH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 3455555566654433221 23 25899999988888889999888888777654333322 256788
Q ss_pred HHHhcCCChhHHHHHHHHHHHhc--------CCCCCCCCCchhHHHHHHHHHhc--CchHHHHHhhccCCHHHHHHHHHH
Q 010080 392 LHLLSTSPFDIKKEVAYVLGNLC--------VSPTEGEGKPKLIQEHLVSLVGR--GCLSGFIDLVRSADIEAARLGLQF 461 (518)
Q Consensus 392 i~lL~~~~~~v~~eA~~aL~nl~--------~~~~~~~~~~~~~~~~~~~l~~~--g~i~~L~~lL~~~d~~~~~~~l~~ 461 (518)
..+|.+.++.|.|.+.-+.+++- .++ +.+ +.....++. .+-..+++++.+.+..+...++++
T Consensus 106 ~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~----~~~----~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKF 177 (386)
T 3o2t_A 106 NMLLRDENVNVVKKAILTMTQLYKVALQWMVKSR----VIS----ELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKF 177 (386)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-----CCC----HHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC----Ccc----hhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 88888889999999888877762 111 100 111122211 233456677778888899999999
Q ss_pred HHHHH
Q 010080 462 MELVL 466 (518)
Q Consensus 462 l~~il 466 (518)
++.+.
T Consensus 178 le~VI 182 (386)
T 3o2t_A 178 VEGLI 182 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 137
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=74.13 E-value=3.3 Score=25.77 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=25.7
Q ss_pred ccccccccccCchH-HhhhHHHHHHHhhHhhHHHHHHhh
Q 010080 9 HKRDPIKSSVGNVA-AQRRRQNAVTVGKERRESLVRAKR 46 (518)
Q Consensus 9 ~r~~~~k~~~~~~~-~~rr~~~~~~~rk~~r~~~l~~kR 46 (518)
.|...||+.+...+ ..|||+ ..+.-|++|-+.++.-|
T Consensus 2 PR~sqYK~k~~~~~q~~rRr~-~L~~QK~~R~D~~nhaR 39 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSERRRR-LLELQKSKRLDYVNHAR 39 (40)
T ss_dssp CCGGGTTCCCCSCSTTHHHHH-HHHHHHHHHHHHHHTTT
T ss_pred ccHHhhccccchhhHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 36778998754333 455555 67888999988887665
No 138
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=74.09 E-value=43 Score=30.55 Aligned_cols=110 Identities=12% Similarity=0.174 Sum_probs=74.8
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHh--------cC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNL--------CV 415 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl--------~~ 415 (518)
.+++.++.+-...+..+|+..+-.|.-.+...++... ..++.|..+|.+.++.|.|.|.-+.+++ +.
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~ 127 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCS 127 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888877677778999888888777643333222 2567888888888999999988877776 22
Q ss_pred CCCCCCCCchhHHHHHHHHHhc--CchHHHHHhhccCCHHHHHHHHHHHHHHH
Q 010080 416 SPTEGEGKPKLIQEHLVSLVGR--GCLSGFIDLVRSADIEAARLGLQFMELVL 466 (518)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~--g~i~~L~~lL~~~d~~~~~~~l~~l~~il 466 (518)
++ +.+ +.....++. .+=..+++++.+.+..+...++++++.+.
T Consensus 128 ~~----~~~----~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 128 LM----EPG----DSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SS----SCC----HHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CC----CCc----chHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 21 111 112223321 23445777788888899999999999876
No 139
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=73.88 E-value=6.9 Score=33.18 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=48.4
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH-ENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~-~~~~i~~~a~~il~~~ 509 (518)
++..|..-|..+++.++..+|.+|+.+++.|.. .+...+-.-..++.|..+... .+++|++++..+|+.+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~-~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK-IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH-HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 455666677888999999999999999987643 122223233345555555443 6789999998888764
No 140
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=71.94 E-value=6.1 Score=32.56 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=48.8
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~ 509 (518)
++..|..-|..+++.++..+|..|+.+.+.|+. .+...+-.-..++.+..+....++.|+++...++..+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~-~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK-IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 455666667888999999999999999887643 1222222233455555555567889999999988764
No 141
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=71.17 E-value=16 Score=29.61 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=60.8
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhccCCHHHHHHHHHHHHHHH
Q 010080 387 ALALLLHLLSTSPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVRSADIEAARLGLQFMELVL 466 (518)
Q Consensus 387 ~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~~~d~~~~~~~l~~l~~il 466 (518)
++|.|+..|++.+.-+...++-.|...- + -.++.+...|.++|..=+..+ |..+.
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~--------------~--------~l~p~I~~vl~s~D~~W~ywi---l~~lv 86 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ--------------S--------IAMPHILTILQGNDIMWKYWV---IKLMI 86 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH--------------H--------HHHHHHHHHHHSSCHHHHHHH---HHHHG
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc--------------H--------hhHHHHHHHHHcCChHHHHHH---HHHHH
Confidence 5778999999999888877777776541 1 146667778888887654444 33333
Q ss_pred ccCCCCcchhHHHhhchHHHHHHHhcCC-----CHHHHHHHHHHHHhhcCc
Q 010080 467 RGMPNHEGTKLVEREDGIDAMERFQFHE-----NEDLRNMANGLVDKYFGE 512 (518)
Q Consensus 467 ~~~~~~~~~~~ie~~ggl~~l~~L~~~~-----~~~i~~~a~~il~~~f~~ 512 (518)
...+ .... ..-...|+++...+ ..++.+.|..||++||.+
T Consensus 87 ~~~~----~~~~--~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 87 PYLI----YPNK--QLVKSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp GGCC----HHHH--HHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred HcCC----HHHH--HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 2221 1111 11234577776664 678999999999999975
No 142
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=70.01 E-value=37 Score=31.77 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=68.8
Q ss_pred ChhhhHHHHHHHHHHhccCCHHHHHHHHhC--CCHHHHHHHhcC-------CChhHHHHHHHHHHHhcCCCCCCCCCchh
Q 010080 356 EHRVLKKEAAWVLSNIAAGSVEHKQLIHSS--EALALLLHLLST-------SPFDIKKEVAYVLGNLCVSPTEGEGKPKL 426 (518)
Q Consensus 356 ~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~--~~i~~Li~lL~~-------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~ 426 (518)
..+.+++.|+.+|+.....+|..+..+.+. .++..++.-|.. ...-++|.-+.+|--|...+.
T Consensus 82 ~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-------- 153 (315)
T 3qml_C 82 LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE-------- 153 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST--------
T ss_pred CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH--------
Confidence 345789999999999999999998887763 445555544422 233577778888888876431
Q ss_pred HHHHHHHHHhcCchHHHHHhhccC--CHHHHHHHHHHHHHHHc
Q 010080 427 IQEHLVSLVGRGCLSGFIDLVRSA--DIEAARLGLQFMELVLR 467 (518)
Q Consensus 427 ~~~~~~~l~~~g~i~~L~~lL~~~--d~~~~~~~l~~l~~il~ 467 (518)
.+ ....+..|.+++... ++.++..++..+..++.
T Consensus 154 ------~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 154 ------DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp ------TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ------hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 01 133557777777777 99999999999998885
No 143
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=68.86 E-value=11 Score=31.50 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=50.4
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhc------CCCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF------HENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~------~~~~~i~~~a~~il~~~ 509 (518)
++..|..-|.+.++.++..+|..|+.+.+.|.. .+...|-.-..++.|..+.. ..+++|+++...+|..+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~-~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK-RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH-HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 456666777889999999999999999987753 22233334445666766654 35789999999988764
No 144
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=68.76 E-value=10 Score=31.51 Aligned_cols=70 Identities=7% Similarity=0.035 Sum_probs=48.2
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcC------CCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH------ENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~------~~~~i~~~a~~il~~~ 509 (518)
++..|..-|.++++.++..+|.+|+.+.+.|+. .+...+-.-..++.|..+... .+++|++++..+|..+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE-KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 456666667889999999999999999887643 222333334455666665542 4788999888888764
No 145
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=67.04 E-value=10 Score=32.45 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=47.9
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhc------CCCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQF------HENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~------~~~~~i~~~a~~il~~~ 509 (518)
++..|..-|.++++.++..+|.+|+.+++.|.. .+...+-.-..++.|..+.. ..+.+|++++..+|+.+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~-~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR-RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 456667777888999999999999999887642 12223333345566666653 24678999888888764
No 146
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=64.70 E-value=23 Score=30.85 Aligned_cols=143 Identities=15% Similarity=0.093 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhcCC-----CChHHHHHHHHHHH
Q 010080 77 TSSAVEELKSAVAYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLAFG-----SPDEQLLEAAWCLT 151 (518)
Q Consensus 77 ~~~~~~~l~~~l~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~~~-----~~~~~~~eA~~~L~ 151 (518)
....++++.+.+.+ ..+..|+..|+. +|-+ ..++|.|++++... .+-......+....
T Consensus 9 lq~yf~~It~a~~~------~~r~~aL~sL~~------D~gL-----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ 71 (196)
T 4atg_A 9 LQLYFDKILSMIKS------DMKDIAIECLEK------ESGL-----QQLVPYFIQHISELILKSFKEAEVLKTCIALYF 71 (196)
T ss_dssp HHHHHHHHHHHHTS------TTHHHHHHHHHH------CSSC-----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------HHHHHHHHHHhc------CCCh-----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 34567788887752 456777887776 2333 45789999888631 11222222334444
Q ss_pred HHhcCChHHHHHhc-CChHHHHHhhcCC--CCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCCC--ChhHH
Q 010080 152 NIAAGKQEETKALL-PALPLLIAHLGEK--SSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLPN--KGSTV 226 (518)
Q Consensus 152 nia~~~~~~~~~v~-~~v~~Lv~lL~~~--~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~~--~~~~~ 226 (518)
.+..+..-..+..+ ..+|.++.++-+. ....+|+.|+..|+.|+...... ..-+...++..+.+.+.++ +....
T Consensus 72 ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~-y~~L~~RI~~tl~k~l~dp~~~l~t~ 150 (196)
T 4atg_A 72 SLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRS-YKTLAPRVLKTLKGVWMDPNRSEDSQ 150 (196)
T ss_dssp HHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTT-STTHHHHHHHHHHHHHTCTTSCHHHH
T ss_pred HHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCcc-CchHHHHHHHHHHHHHcCCCCChHHH
Confidence 44444332233333 4677777765331 12389999999999998521110 0111222344555555433 56667
Q ss_pred HHHHHHHHHhh
Q 010080 227 RTAAWALSNLI 237 (518)
Q Consensus 227 ~~a~~~L~nL~ 237 (518)
--|.+.|..|-
T Consensus 151 YGAi~GL~~lG 161 (196)
T 4atg_A 151 YGALYCLSILS 161 (196)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhH
Confidence 78888888774
No 147
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=63.43 E-value=53 Score=27.10 Aligned_cols=72 Identities=18% Similarity=0.072 Sum_probs=54.9
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcC------CChhHHHHHHHHHHHhcC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLST------SPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~------~~~~v~~eA~~aL~nl~~ 415 (518)
.++..|..-|.+.++.++..|+-+|-.+... +......+....++..|+.++.. .+..|+..++..|-.-+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4777888888999999999999888888764 44455556666888899998863 367899888777766543
No 148
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=61.02 E-value=2.3 Score=40.49 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=29.1
Q ss_pred ccCcccccccccccCchHHhhhHHHHHHHhhHhhHHHHHHhhhc
Q 010080 5 SLNHHKRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRAKRLC 48 (518)
Q Consensus 5 ~~~~~r~~~~k~~~~~~~~~rr~~~~~~~rk~~r~~~l~~kR~~ 48 (518)
.-|..|...||++....+-.+||+...+.-|+||.+.+...|++
T Consensus 27 ~a~HPR~sqyK~k~~~~~Q~~RR~~~Le~QK~kR~d~~~haR~L 70 (365)
T 3gjx_B 27 AAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRL 70 (365)
T ss_dssp TSCCGGGCC---CTTCCSCCHHHHHHHHHTCCCCSCHHHHHHHH
T ss_pred cCCCcchhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45667999999876554445666666677777888888888864
No 149
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=58.59 E-value=84 Score=26.59 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=55.1
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccCCHH-HHHHHHhCCCHHHHHHHhcC------CChhHHHHHHHHHHHhcC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVE-HKQLIHSSEALALLLHLLST------SPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~-~~~~li~~~~i~~Li~lL~~------~~~~v~~eA~~aL~nl~~ 415 (518)
.++..|..-|.+.++.++..|+-+|-.+...+.. ....+.+..++..|+.++.. .+..|++.++..|-.-+.
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4778888889999999999999999888876544 44455566788899999852 357899888877766543
No 150
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=56.03 E-value=48 Score=27.02 Aligned_cols=71 Identities=6% Similarity=0.068 Sum_probs=53.0
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
.++..|..-|.+.++.++..|+-+|-.+... +......+....++..|+.++...++.|+..+...|..-+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4778888888999999888888877777654 3344444545567788888887778899998877776554
No 151
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=54.33 E-value=53 Score=27.03 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=51.7
Q ss_pred HHHHhcCchHHHHHhhcc------CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC--CHHHHHHHH
Q 010080 432 VSLVGRGCLSGFIDLVRS------ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMAN 503 (518)
Q Consensus 432 ~~l~~~g~i~~L~~lL~~------~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~--~~~i~~~a~ 503 (518)
..+++.|++..+-.-|.- +...++...+++|..+ + .....+.++|.=..+..|..|+ .++++++|.
T Consensus 55 ~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----P--I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~ 128 (145)
T 2xpp_A 55 ESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----K--IHKEHLVTSGVGKIVYFYSINPKESKEVRASAK 128 (145)
T ss_dssp HHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----C--CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----C--CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHH
Confidence 567888888888887763 3456777766666654 3 2356677776556667777775 668999999
Q ss_pred HHHHhh
Q 010080 504 GLVDKY 509 (518)
Q Consensus 504 ~il~~~ 509 (518)
.|++++
T Consensus 129 ~Li~~W 134 (145)
T 2xpp_A 129 ALVQKW 134 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 152
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=53.56 E-value=58 Score=27.34 Aligned_cols=71 Identities=7% Similarity=0.055 Sum_probs=53.5
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhcC-CChhHHHHHHHHHHHhc
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLST-SPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~~-~~~~v~~eA~~aL~nl~ 414 (518)
.++..|..-|.+.++.++..|+-+|-.+... .......+....++..|+.++.. .++.|+..+...|-.-+
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4778888889999999999888888888764 34444455556788888888864 56789888877765554
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.88 E-value=1e+02 Score=27.43 Aligned_cols=72 Identities=10% Similarity=0.183 Sum_probs=53.3
Q ss_pred hhHHHHHHHhccChhhhHHHHHHHHHHhccC-CHHHHHHHHhCCCHHHHHHHhc-CCChhHHHHHHHHHHHhcC
Q 010080 344 QVIAVLVKCLKSEHRVLKKEAAWVLSNIAAG-SVEHKQLIHSSEALALLLHLLS-TSPFDIKKEVAYVLGNLCV 415 (518)
Q Consensus 344 ~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~-~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~eA~~aL~nl~~ 415 (518)
.++..|..-|.+.++.++..|+-+|-.+... +......+....++..|+.+++ ..+..|+..++..|..-+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 5788888889999999999988888887764 3344444555567777888874 3567899888877766644
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=47.54 E-value=27 Score=31.24 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=47.5
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHH-hcCCCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFHENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L-~~~~~~~i~~~a~~il~~~ 509 (518)
++..|..-|.++++.++..+|.+|+.+.+.+.. .+...|-.-..++.|..| ....+++|++++..+|..+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~-~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 116 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ-TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAW 116 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH-HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch-HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 456677778889999999999999999886642 112222223334444444 3456789999999888864
No 155
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=46.59 E-value=39 Score=28.20 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=45.2
Q ss_pred chHHHHHhhc-cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHH-HHHHh---cCCCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVR-SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDA-MERFQ---FHENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~-~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~-l~~L~---~~~~~~i~~~a~~il~~~ 509 (518)
++..|..-|. .+++.++..+|.+|+.+.+.|.. .+...+-.-.-++. |..+. ..+..+|++++..+|..+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~-~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH-RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH-HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 4555666666 47889999999999999987643 12222323334554 44443 234568999998888764
No 156
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.54 E-value=29 Score=30.86 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=45.8
Q ss_pred chHHHHHhhccCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHH-hcCCCHHHHHHHHHHHHhh
Q 010080 439 CLSGFIDLVRSADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERF-QFHENEDLRNMANGLVDKY 509 (518)
Q Consensus 439 ~i~~L~~lL~~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L-~~~~~~~i~~~a~~il~~~ 509 (518)
++..|..-|.++++.++..+|.+|+.+++.+.. .+...+-.-.-++.|..+ ....+.+|++++..+++.+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~-~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 113 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA-PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTW 113 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH-HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 455566667889999999999999999987642 111222222234444444 3356789999988888753
No 157
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=46.52 E-value=67 Score=35.68 Aligned_cols=187 Identities=13% Similarity=0.109 Sum_probs=107.6
Q ss_pred hchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHHHHHcc---CCCccchhhhhhhhhh-----h
Q 010080 252 DGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLVERLAT---SNSLQLLIPVLRSLGN-----L 323 (518)
Q Consensus 252 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv~lL~~---~~~~~v~~~al~~L~n-----l 323 (518)
..++.-|+++-.+..++|+..|-.+|......-+..... ++|.+++.|.. ..+.+-..-|+.+|.. .
T Consensus 132 ~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~ 206 (997)
T 1vsy_5 132 NLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK 206 (997)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH
Confidence 466777788777889999999999999888644333332 35666776643 4455555666666552 2
Q ss_pred hcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCH------------------------HHH
Q 010080 324 VAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSV------------------------EHK 379 (518)
Q Consensus 324 ~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~------------------------~~~ 379 (518)
+..+-. . -..+++.|+......+++|++-+-.+...+..+.. ..+
T Consensus 207 ~~~d~~----~-------~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~ 275 (997)
T 1vsy_5 207 LMTDYK----D-------IGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQV 275 (997)
T ss_dssp GGGCHH----H-------HHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHH
T ss_pred HhcChH----H-------HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHH
Confidence 211100 0 12356666666666677777666655444443110 001
Q ss_pred HH-----------HHh--CCCHHHHHHHh-cCCC--hhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHH
Q 010080 380 QL-----------IHS--SEALALLLHLL-STSP--FDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGF 443 (518)
Q Consensus 380 ~~-----------li~--~~~i~~Li~lL-~~~~--~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L 443 (518)
+. ..+ .++...|++++ .+.. .+...-++..+.++....+. .- ...++..+
T Consensus 276 ~~~~~~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~-~~-------------~~~~v~~~ 341 (997)
T 1vsy_5 276 EAVKLAKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES-KP-------------DKRAVFSI 341 (997)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC-CC-------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC-CC-------------CHHHHHHH
Confidence 11 111 12333444555 2234 56666666776666543211 11 11246668
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHcc
Q 010080 444 IDLVRSADIEAARLGLQFMELVLRG 468 (518)
Q Consensus 444 ~~lL~~~d~~~~~~~l~~l~~il~~ 468 (518)
.+.+.++.|.+...++.++..|+..
T Consensus 342 ~~~l~~dhp~~R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 342 ISQISTKHPEIIHLVVKSLLSTCNK 366 (997)
T ss_dssp HGGGGGCCHHHHHHHHHHHTHHHHH
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999888753
No 158
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=39.31 E-value=20 Score=28.95 Aligned_cols=64 Identities=8% Similarity=0.170 Sum_probs=42.1
Q ss_pred hhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhcCC
Q 010080 343 DQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLCVS 416 (518)
Q Consensus 343 ~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~~~ 416 (518)
...+...+.-|+.....|+.-+.|++.|.-. ... ++..+.+.+....+.-|-...+.+..++.+
T Consensus 6 ~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~-----a~~-----iv~~i~~~l~~~~~~~KL~~LYLindIl~n 69 (135)
T 4fu3_A 6 ESALEKKLSELSNSQQSVQTLSLWLIHHRKH-----AGP-----IVSVWHRELRKAKSNRKLTFLYLANDVIQN 69 (135)
T ss_dssp HHHHHHHHHHCCSSTTHHHHHHHHHHHTGGG-----HHH-----HHHHHHHHHHHSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 3455555566677788999999999988632 122 333455666555566677777887777554
No 159
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=38.79 E-value=86 Score=25.82 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=45.7
Q ss_pred chHHHHHhhcc--CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC------CHHHHHHHHHHHHhhc
Q 010080 439 CLSGFIDLVRS--ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE------NEDLRNMANGLVDKYF 510 (518)
Q Consensus 439 ~i~~L~~lL~~--~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~------~~~i~~~a~~il~~~f 510 (518)
++..|..-|.+ .....+.++|..|..|++.++........+...-+..|..++..+ ...|+++|..|++-.-
T Consensus 60 Im~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 60 IMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhC
Confidence 34455555554 357899999999999999875421112222223345555544432 4479999999998544
Q ss_pred Ccc
Q 010080 511 GED 513 (518)
Q Consensus 511 ~~~ 513 (518)
+++
T Consensus 140 D~e 142 (148)
T 1inz_A 140 DED 142 (148)
T ss_dssp SCC
T ss_pred CHH
Confidence 433
No 160
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=37.80 E-value=2.1e+02 Score=25.07 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=76.1
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhhcC-CchhhhHHHhcCchHHHHHHHccCCCccchhhhhhhhhhhhcCCCccccee
Q 010080 256 DAILRHLKRADEELTTEVAWVVVYLSAL-SNVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSLGNLVAGDSSTISDV 334 (518)
Q Consensus 256 ~~L~~lL~~~d~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L~nl~~~~~~~~~~~ 334 (518)
..+..+..++.-|.+.-++-.+.+.... .++. ++.+-.++..-++-.+....++++++++...+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG-----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH-----
Confidence 3445556666667777777777665421 1111 111122222234445555445677777654431
Q ss_pred eccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 010080 335 LVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALLLHLLSTSPFDIKKEVAYVLGNLC 414 (518)
Q Consensus 335 i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~eA~~aL~nl~ 414 (518)
.+.+.+.....+++.-+++.|+-.+ +.......... +++.+..++.+++.-|++..+|+|..++
T Consensus 124 ---------~~~~~i~~W~~s~~~w~rR~ai~~~--l~~~~~~~~~~-----~~~i~~~~~~d~~~yV~kavgW~Lr~~~ 187 (220)
T 2b6c_A 124 ---------ELPTIFALFYGAENFWNRRVALNLQ--LMLKEKTNQDL-----LKKAIIYDRTTEEFFIQKAIGWSLRQYS 187 (220)
T ss_dssp ---------GHHHHHHHHTTCSSHHHHHHHHHTT--TTCGGGCCHHH-----HHHHHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHcCCCHHHHHHHHHHH--HHHHHCCCHHH-----HHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 2567788899999988888776543 21111111111 2444444678888999999999999997
Q ss_pred CC
Q 010080 415 VS 416 (518)
Q Consensus 415 ~~ 416 (518)
..
T Consensus 188 k~ 189 (220)
T 2b6c_A 188 KT 189 (220)
T ss_dssp TT
T ss_pred hh
Confidence 63
No 161
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=37.50 E-value=1.3e+02 Score=25.34 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=51.6
Q ss_pred HHHHhcCchHHHHHhhcc------CCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCC--CHHHHHHHH
Q 010080 432 VSLVGRGCLSGFIDLVRS------ADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHE--NEDLRNMAN 503 (518)
Q Consensus 432 ~~l~~~g~i~~L~~lL~~------~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~--~~~i~~~a~ 503 (518)
..+++.|++..+..-|.. +...+....+.+|..+ + .....+.++|.=..+..+..|+ .+++++.|.
T Consensus 70 ~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----P--I~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~ 143 (170)
T 3nfq_A 70 DTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----P--VKTEHLKESGLGRVVIFYTKSKRVEAQLARLAE 143 (170)
T ss_dssp HHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----C--CCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----C--CCHHHHhhCCCCceeeehhcCCcccHHHHHHHH
Confidence 567889998888887764 3346777766666644 3 2356677776555566677775 578999999
Q ss_pred HHHHhhc
Q 010080 504 GLVDKYF 510 (518)
Q Consensus 504 ~il~~~f 510 (518)
.|++++-
T Consensus 144 ~Li~~Ws 150 (170)
T 3nfq_A 144 KLIAEWT 150 (170)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999873
No 162
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=37.16 E-value=27 Score=26.95 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=33.6
Q ss_pred HHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHHhhc
Q 010080 458 GLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFH-ENEDLRNMANGLVDKYF 510 (518)
Q Consensus 458 ~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~-~~~~i~~~a~~il~~~f 510 (518)
++++|..|-.. ......+.+.+.=..+..|..| ++++|...|..|+.++-
T Consensus 33 ~l~~L~~L~~~---~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK 83 (103)
T 1wjt_A 33 ALDLLKKLNSC---QMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWK 83 (103)
T ss_dssp HHHHHHHHHTS---CCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 44545555222 1345666666655667778776 99999999999998653
No 163
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=36.86 E-value=2.8e+02 Score=26.99 Aligned_cols=226 Identities=10% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhcCChHHHHHhc-CChHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHH
Q 010080 127 IPVLVQCLAFGSPDEQLLEAAWCLTNIAAGKQEETKALL-PALPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVL 205 (518)
Q Consensus 127 ip~Lv~~L~~~~~~~~~~eA~~~L~nia~~~~~~~~~v~-~~v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~ 205 (518)
+-.|+.++++++ +..+-..-.+|+.|-+.-...+..+. ..-..|..+......-.-....+.++|.|..+...--+.-
T Consensus 131 i~~Ll~lfdSeD-prER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkee 209 (403)
T 3fga_B 131 VLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 209 (403)
T ss_dssp HHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHHHHcCCCC-hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHH
Q ss_pred HhcCChhHHHhhhCCCChhHH-HHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCC
Q 010080 206 LSQGALPPLARMMLPNKGSTV-RTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS 284 (518)
Q Consensus 206 ~~~g~i~~L~~ll~~~~~~~~-~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 284 (518)
-..=....|+.|.+....... ...+.|+..++ .++|.. ...++..|++.=-.+++.=...-+.-+..+...-
T Consensus 210 hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~-eKDp~L------~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~ 282 (403)
T 3fga_B 210 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFL-EKDSTL------TEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI 282 (403)
T ss_dssp HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHH-HHCGGG------HHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH-HhCchh------HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhC
Q ss_pred chhhhHHHhcCchHHHHHHHccCCCccchhhhhhhh-----hhhhcCCCcccceeeccCCCchhhhHHHHHHHhccC-hh
Q 010080 285 NVATSLLVKSGVLQLLVERLATSNSLQLLIPVLRSL-----GNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSE-HR 358 (518)
Q Consensus 285 ~~~~~~~~~~g~~~~Lv~lL~~~~~~~v~~~al~~L-----~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~-~~ 358 (518)
+..--.-+...++..+...+ .+++.+|...|+... .++...+...+-.+ ++|.|....... +.
T Consensus 283 ~~~~f~~i~~~lf~~la~ci-~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPi----------i~p~L~~~~~~HWn~ 351 (403)
T 3fga_B 283 EPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYWNNEYIMSLISDNAAKILPI----------MFPSLYRNSKTHWNK 351 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-TCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHH----------HHHHHHHTTSCCSCH
T ss_pred CHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHH----------HHHHHHHHHHHccCH
Q ss_pred hhHHHHHHHHHHh
Q 010080 359 VLKKEAAWVLSNI 371 (518)
Q Consensus 359 ~i~~~a~~~Lsnl 371 (518)
.++..+.-++.-+
T Consensus 352 ~v~~l~~~vlk~l 364 (403)
T 3fga_B 352 TIHGLIYNALKLF 364 (403)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 164
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=33.53 E-value=4.4e+02 Score=29.16 Aligned_cols=186 Identities=8% Similarity=0.039 Sum_probs=104.5
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHhhhCCChhhHHHHHhcCChhHHHhhhCC----CChhHHHHHHHHHH--HhhcCCC
Q 010080 168 LPLLIAHLGEKSSSPVAEQCAWALGNVAGEGEEFRNVLLSQGALPPLARMMLP----NKGSTVRTAAWALS--NLIKGPD 241 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~~~L~nla~d~~~~r~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~--nL~~~~~ 241 (518)
+.-|+.+-.+ ...+|+..|-.+|....+--+..+.. ++|.++..|+. .+.+-.+.|+++|. .+...-
T Consensus 135 l~dL~~Ls~S-~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~- 207 (997)
T 1vsy_5 135 LVDIIQLATS-LYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKL- 207 (997)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHG-
T ss_pred HHHHHHHhcC-chHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHH-
Confidence 4455555444 67899999999999888755545544 35677777654 35556677777665 121110
Q ss_pred CCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCC--ch------------------h----hhHH------
Q 010080 242 PKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALS--NV------------------A----TSLL------ 291 (518)
Q Consensus 242 ~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--~~------------------~----~~~~------ 291 (518)
...... ...+++.|++....+.++|+.-+-.+...+..+- +. . ++..
T Consensus 208 -~~d~~~--~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~ 284 (997)
T 1vsy_5 208 -MTDYKD--IGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKK 284 (997)
T ss_dssp -GGCHHH--HHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTH
T ss_pred -hcChHH--HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence 001112 3467777777766666666554443333333210 00 0 0000
Q ss_pred -----Hh--cCchHHHHHHHccCCC--ccchhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHH
Q 010080 292 -----VK--SGVLQLLVERLATSNS--LQLLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKK 362 (518)
Q Consensus 292 -----~~--~g~~~~Lv~lL~~~~~--~~v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~ 362 (518)
.+ .++...+++.+..... .....-+++.|.++....+.. . ...++..+++.+.+++|.+|+
T Consensus 285 ~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~----~------~~~~v~~~~~~l~~dhp~~R~ 354 (997)
T 1vsy_5 285 KREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK----P------DKRAVFSIISQISTKHPEIIH 354 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC----C------CHHHHHHHHGGGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC----C------CHHHHHHHHHhhcCCCHHHHH
Confidence 00 1223333444422333 556666677766665443321 1 246888999999999999999
Q ss_pred HHHHHHHHhcc
Q 010080 363 EAAWVLSNIAA 373 (518)
Q Consensus 363 ~a~~~Lsnl~~ 373 (518)
.|..++..+..
T Consensus 355 ~a~~~l~~il~ 365 (997)
T 1vsy_5 355 LVVKSLLSTCN 365 (997)
T ss_dssp HHHHHHTHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988866643
No 165
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=31.27 E-value=39 Score=23.82 Aligned_cols=19 Identities=16% Similarity=0.501 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhcCccCC
Q 010080 497 DLRNMANGLVDKYFGEDYG 515 (518)
Q Consensus 497 ~i~~~a~~il~~~f~~~~~ 515 (518)
+|++.+..-+++||+++++
T Consensus 51 ~Ir~~~~e~~~~FFpe~~~ 69 (70)
T 2g7o_A 51 DIREKVSSEMERFFPKNDD 69 (70)
T ss_dssp HHHHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHhCccccC
Confidence 5788899999999988655
No 166
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=26.87 E-value=2e+02 Score=25.42 Aligned_cols=116 Identities=15% Similarity=0.065 Sum_probs=0.0
Q ss_pred hHHHHHhhcCCCCHHHHHHHH-HHHHhhhCCChh-hHHHHHhcCChhHHHhhhCCCChhHHHHHHHHHHHhhcCCCCCch
Q 010080 168 LPLLIAHLGEKSSSPVAEQCA-WALGNVAGEGEE-FRNVLLSQGALPPLARMMLPNKGSTVRTAAWALSNLIKGPDPKPA 245 (518)
Q Consensus 168 v~~Lv~lL~~~~~~~v~~~a~-~~L~nla~d~~~-~r~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~ 245 (518)
++.+-.++...++-.+....+ .++|.+....++ . .+.+...+.+++.-++|.++-++.......+
T Consensus 97 l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~~---------~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d---- 163 (232)
T 3jxy_A 97 IPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELI---------SAYIPKWIASDNIWLQRAAILFQLKYKQKMD---- 163 (232)
T ss_dssp HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGGG---------GGTHHHHHHSSCHHHHHHHHHTTTTCGGGCC----
T ss_pred HHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHHHH---------HHHHHHHhcCCchHHHHHHHHHHHHHHhCCC----
Q ss_pred hhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhcCCchhhhHHHhcCchHHHH
Q 010080 246 TELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSALSNVATSLLVKSGVLQLLV 301 (518)
Q Consensus 246 ~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~~~~Lv 301 (518)
....++.+..++.+++.-|+..+.|+|..++..+++.....++..-++.+.
T Consensus 164 -----~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~~~l~~~~ 214 (232)
T 3jxy_A 164 -----EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLS 214 (232)
T ss_dssp -----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHSCCCHHH
T ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHCCCCHHH
No 167
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=25.89 E-value=81 Score=28.60 Aligned_cols=99 Identities=11% Similarity=0.003 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHhhhCCChh-hHHHHHhcCChhHHHhhhC----C----CChhHHHHHHHHHHHhhcCCC-CCchhhH
Q 010080 179 SSSPVAEQCAWALGNVAGEGEE-FRNVLLSQGALPPLARMML----P----NKGSTVRTAAWALSNLIKGPD-PKPATEL 248 (518)
Q Consensus 179 ~~~~v~~~a~~~L~nla~d~~~-~r~~~~~~g~i~~L~~ll~----~----~~~~~~~~a~~~L~nL~~~~~-~~~~~~~ 248 (518)
.++..+--++++++|+-. ++. .|..+........++..+. + ++..++..++..+.|++-... .+..
T Consensus 102 ~~~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~--- 177 (253)
T 3gae_A 102 KNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD--- 177 (253)
T ss_dssp SSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC---
T ss_pred CchhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch---
Confidence 567899999999999988 445 4665554433444444432 1 245677788888888875310 0111
Q ss_pred HHhhchHHHHHHHhc---------cCChhHHHHHHHHHHHhhcCC
Q 010080 249 IKVDGLLDAILRHLK---------RADEELTTEVAWVVVYLSALS 284 (518)
Q Consensus 249 i~~~~~l~~L~~lL~---------~~d~~v~~~a~~~L~~L~~~~ 284 (518)
......++..+. ..|+|....++-+|++|...+
T Consensus 178 ---~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 178 ---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp ---TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 123333444443 237788889999999888643
No 168
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=25.62 E-value=1.4e+02 Score=21.83 Aligned_cols=59 Identities=19% Similarity=0.343 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHHHHHccCCCCcchhHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhcCc
Q 010080 449 SADIEAARLGLQFMELVLRGMPNHEGTKLVEREDGIDAMERFQFHENEDLRNMANGLVDKYFGE 512 (518)
Q Consensus 449 ~~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~ggl~~l~~L~~~~~~~i~~~a~~il~~~f~~ 512 (518)
.-|.+.+..+|+-|+.=.+...+......+.-+.-++.+. .|.+.|.+-..|+++|.+.
T Consensus 18 kvd~~~v~~IL~eiE~~~rksnni~tS~If~Yanh~~~V~-----knk~fy~li~~IlekYs~K 76 (99)
T 2kjg_A 18 KVNFNLVMQILDEIELDLRGSDNIKTSIIYVYSSHLDEIR-----KNKEFYDMIAEILQRYYKK 76 (99)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTHHHHH-----HTHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhCcc
Confidence 3577777777777776666543311122222333444443 6889999999999999764
No 169
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=25.29 E-value=99 Score=28.03 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=73.4
Q ss_pred chhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhCCCHHHH
Q 010080 312 LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSSEALALL 391 (518)
Q Consensus 312 v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~~~i~~L 391 (518)
.+-|++-.+.-++...... . . +...+...+.+..+..+.-++.+++|+..+..-..+.+.++.....+
T Consensus 70 ~~fP~lDllRl~~~~~~~~-~-~----------l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i 137 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPYS-S-D----------IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSI 137 (253)
T ss_dssp CCHHHHHHHHHHGGGCSCG-G-G----------GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTH
T ss_pred ccchHHHHHHHHHcCCchH-H-H----------HHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHH
Confidence 3556666666655444321 1 1 11222333445567889999999999987654133334333234444
Q ss_pred HHHhcC--------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc---------cCCHHH
Q 010080 392 LHLLST--------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR---------SADIEA 454 (518)
Q Consensus 392 i~lL~~--------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~---------~~d~~~ 454 (518)
+..+.+ .+..++-.++..+.|++........ +......+.+++. ..|++.
T Consensus 138 ~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-------------~~e~~~~l~~~i~~~~~~~e~~~~d~Ea 204 (253)
T 3gae_A 138 FETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-------------DLELLPIVADAINTKYGPLEEYQECEEA 204 (253)
T ss_dssp HHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-------------CTTHHHHHHHHHHTTTTTSHHHHHSHHH
T ss_pred HHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-------------hHHHHHHHHHHHHHHhcccccccCCHHH
Confidence 544421 2456888888999998752100000 1122334444443 247888
Q ss_pred HHHHHHHHHHHHcc
Q 010080 455 ARLGLQFMELVLRG 468 (518)
Q Consensus 455 ~~~~l~~l~~il~~ 468 (518)
+.-+|-++.+++..
T Consensus 205 ~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 205 AYRLTVAYGNLATV 218 (253)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888888854
No 170
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=24.72 E-value=50 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhcCccCCCCC
Q 010080 496 EDLRNMANGLVDKYFGEDYGLDE 518 (518)
Q Consensus 496 ~~i~~~a~~il~~~f~~~~~~~~ 518 (518)
++|.+.+..-++.||+++++++|
T Consensus 105 ~~I~~~v~e~~~~fFp~~~~~~~ 127 (127)
T 3on0_A 105 PAIDKFAREQVSIFFPDDEDDQE 127 (127)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCC-
T ss_pred HHHHHHHHHHHHhcCCCcccccC
Confidence 35777777778999999998876
No 171
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=24.47 E-value=3.2e+02 Score=26.80 Aligned_cols=130 Identities=12% Similarity=0.022 Sum_probs=75.8
Q ss_pred chhhhhhhhhhhhcCCCcccceeeccCCCchhhhHHHHHHHhccChhhhHHHHHHHHHHhccCCHHHHHHHHhC-CCHHH
Q 010080 312 LLIPVLRSLGNLVAGDSSTISDVLVPGHGITDQVIAVLVKCLKSEHRVLKKEAAWVLSNIAAGSVEHKQLIHSS-EALAL 390 (518)
Q Consensus 312 v~~~al~~L~nl~~~~~~~~~~~i~~G~~~~~~~l~~L~~lL~~~~~~i~~~a~~~Lsnl~~~~~~~~~~li~~-~~i~~ 390 (518)
.+-|++-.+.-++...... . .+...+-..+....+..+.-++.+++|+..+. ..-..++.. .....
T Consensus 242 ~~FPaLDLLRl~v~~p~~~-~-----------~l~~li~~~l~~~~~an~MltlR~laNlF~~~-~~g~~ll~~~~~~~~ 308 (425)
T 3pst_A 242 IKTPAYDIVRLIVKKLPYS-S-----------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNE-NWGVKLLESNQVYKS 308 (425)
T ss_dssp CCHHHHHHHHHHGGGCSCG-G-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCT-TTHHHHHTSHHHHHH
T ss_pred cccHHHHHHHHHHcCCchH-H-----------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCc-chHHHHhhCchhHHH
Confidence 3667777777666554321 1 12223333344556788999999999998765 322333332 23556
Q ss_pred HHHHhcC--------CChhHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhcCchHHHHHhhc---------cCCHH
Q 010080 391 LLHLLST--------SPFDIKKEVAYVLGNLCVSPTEGEGKPKLIQEHLVSLVGRGCLSGFIDLVR---------SADIE 453 (518)
Q Consensus 391 Li~lL~~--------~~~~v~~eA~~aL~nl~~~~~~~~~~~~~~~~~~~~l~~~g~i~~L~~lL~---------~~d~~ 453 (518)
++..+.. .+..++..++..+.|++... .+.-.+...+..+..++. ..|++
T Consensus 309 i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~-------------~~~~~~~el~~~l~e~l~~~~g~~E~~~~d~E 375 (425)
T 3pst_A 309 IFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV-------------TKGNSDLELLPIVADAINTKYGPLEEYQECEE 375 (425)
T ss_dssp HHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-------------HHSCSCTTHHHHHHHHHHHTTTTSHHHHTSHH
T ss_pred HHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHH-------------hcccchHHHHHHHHHHHHhhccccccccCCHH
Confidence 6665531 13457888888999987521 000001123445555555 25888
Q ss_pred HHHHHHHHHHHHHc
Q 010080 454 AARLGLQFMELVLR 467 (518)
Q Consensus 454 ~~~~~l~~l~~il~ 467 (518)
...-+|-+|-+++.
T Consensus 376 A~yRlLVALGtLv~ 389 (425)
T 3pst_A 376 AAYRLTVAYGNLAT 389 (425)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888874
No 172
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.18 E-value=62 Score=28.62 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=23.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHHhc
Q 010080 89 AYHGKGAMQKRVNALRELRRLLSRFEFPPIETALKAGAIPVLVQCLA 135 (518)
Q Consensus 89 ~~~~s~~~~~~~~a~~~lr~lls~~~~~~~~~~i~~g~ip~Lv~~L~ 135 (518)
+.+++.|+..++.|+..|--++.+...+...++.....+..|+.++.
T Consensus 49 krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~ 95 (220)
T 1dvp_A 49 KKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLE 95 (220)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhc
Confidence 34456667777777766666555433222223333334445555544
No 173
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=22.34 E-value=68 Score=20.18 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=10.5
Q ss_pred HHHHHhhHhhHHHHH
Q 010080 29 NAVTVGKERRESLVR 43 (518)
Q Consensus 29 ~~~~~rk~~r~~~l~ 43 (518)
....|||+||+..+.
T Consensus 18 EkaRLrRERR~aKi~ 32 (46)
T 3sjd_D 18 EKRRLLRERRQKKFS 32 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444588888888773
No 174
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=20.67 E-value=63 Score=26.73 Aligned_cols=66 Identities=11% Similarity=0.305 Sum_probs=40.1
Q ss_pred hHHHHHhhcc---CCHHHHHHHHHHHHHHHccCCCCcchhHHHhh-chHHHHHHHh---cCC------CHHHHHHHHHHH
Q 010080 440 LSGFIDLVRS---ADIEAARLGLQFMELVLRGMPNHEGTKLVERE-DGIDAMERFQ---FHE------NEDLRNMANGLV 506 (518)
Q Consensus 440 i~~L~~lL~~---~d~~~~~~~l~~l~~il~~~~~~~~~~~ie~~-ggl~~l~~L~---~~~------~~~i~~~a~~il 506 (518)
+..|..-|.. .....+.++|..|+.|+..+++ ..+.++ .-+..|..|. ..+ ...|+++|..|+
T Consensus 49 m~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse----~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~ 124 (150)
T 3onk_A 49 LSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSE----RFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALI 124 (150)
T ss_dssp HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCH----HHHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHH
Confidence 4455554443 3688999999999999998754 122221 2233344443 322 237999999888
Q ss_pred Hhh
Q 010080 507 DKY 509 (518)
Q Consensus 507 ~~~ 509 (518)
+-.
T Consensus 125 ~LL 127 (150)
T 3onk_A 125 ELL 127 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 175
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=20.54 E-value=2.3e+02 Score=22.32 Aligned_cols=57 Identities=9% Similarity=0.116 Sum_probs=37.0
Q ss_pred HHhhhCCCChhHHHHHHHHHHHhhcCCCCCchhhHHHhhchHHHHHHHhccCChhHHHHHHHHHHHhhc
Q 010080 214 LARMMLPNKGSTVRTAAWALSNLIKGPDPKPATELIKVDGLLDAILRHLKRADEELTTEVAWVVVYLSA 282 (518)
Q Consensus 214 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~i~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 282 (518)
.++-|+.+..++.....|++.+.-. ...++..+.+.+....++-+...+..+..++.
T Consensus 13 ~L~~L~~s~~sI~~~s~w~l~h~~~------------a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ 69 (132)
T 4flb_A 13 KFQSVTNTMESIQGLSSWCIENKKH------------HSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQ 69 (132)
T ss_dssp HHHHCCSSHHHHHHHHHHHHHTGGG------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHCcccHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Confidence 4444556678899999999987531 12345566666776666666666666666554
Done!