BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010082
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B4W|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Aldehyde
Dehydrogenase Complexed With Nad+
Length = 495
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 339 TLSSAKSMFVSQLLGTAMGCVIAPLTFWMYWTAFDIGSPDGPYKAPYAVIFREMAILGIE 398
T K + +SQ + T T+ + W AFD GSP G YK + I RE G+E
Sbjct: 421 TTDVPKGIKISQQIRTG--------TYGINWYAFDPGSPFGGYK--NSGIGRENGPEGVE 470
Query: 399 GFSELPKHCLALCCGFFVA 417
F++ + + L G+ VA
Sbjct: 471 HFTQ--QKSVLLPMGYTVA 487
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 79 GVGNSCGFDNFPSFGLTLFKNTFYFDFSPTYVGCGLICP 117
G NSC FD G K+ + Y G ICP
Sbjct: 243 GTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICP 281
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 79 GVGNSCGFDNFPSFGLTLFKNTFYFDFSPTYVGCGLICP---HIVN 121
G C FDN G K + Y G ICP H++N
Sbjct: 244 GTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLN 289
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 79 GVGNSCGFDNFPSFGLTLFKNTFYFDFSPTYVGCGLICP---HIVN 121
G C FDN G K + Y G ICP H++N
Sbjct: 244 GTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLN 289
>pdb|2VXQ|H Chain H, Crystal Structure Of The Major Grass Pollen Allergen Phl P
2 In Complex With Its Specific Ige-Fab
Length = 216
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 111 GCGLICPHI---VNCSVLLGAIISWGFLWPFISQHAGD 145
G GL+ P ++C+V G+I S G+ W +I QH G
Sbjct: 7 GPGLVKPAQTLSLSCAVSGGSIRSGGYYWSWIRQHPGK 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.143 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,151,111
Number of Sequences: 62578
Number of extensions: 621269
Number of successful extensions: 1492
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1491
Number of HSP's gapped (non-prelim): 6
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)