Query 010082
Match_columns 518
No_of_seqs 140 out of 1130
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 20:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 8.7E-97 2E-101 768.8 29.7 487 3-510 185-734 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 5.3E-94 1.2E-98 783.3 38.9 482 1-504 135-679 (681)
3 PF03169 OPT: OPT oligopeptide 100.0 8.3E-83 1.8E-87 706.1 39.8 482 1-499 106-623 (624)
4 TIGR00728 OPT_sfam oligopeptid 100.0 4.2E-79 9.1E-84 678.0 32.7 472 4-498 127-650 (654)
5 TIGR00733 putative oligopeptid 100.0 6.6E-67 1.4E-71 566.7 42.3 461 1-500 94-590 (591)
6 COG1297 Predicted membrane pro 100.0 3.1E-51 6.8E-56 424.8 26.7 462 6-503 113-617 (624)
7 TIGR00733 putative oligopeptid 93.5 12 0.00026 41.8 21.5 148 340-497 88-266 (591)
8 PF03169 OPT: OPT oligopeptide 85.2 30 0.00065 39.0 16.4 116 342-466 102-244 (624)
9 TIGR00814 stp serine transport 44.3 3.2E+02 0.0069 29.0 12.3 99 244-345 18-123 (397)
10 PF11449 DUF2899: Protein of u 38.6 1.2E+02 0.0026 30.9 7.4 28 339-366 270-297 (298)
11 PF14715 FixP_N: N-terminal do 38.4 29 0.00063 25.5 2.3 23 228-251 18-40 (51)
12 PLN00182 putative aquaporin NI 34.7 5E+02 0.011 26.2 12.1 16 342-357 157-172 (283)
13 PF03812 KdgT: 2-keto-3-deoxyg 29.0 1.9E+02 0.0041 29.6 7.1 128 334-471 102-249 (314)
14 TIGR02872 spore_ytvI sporulati 27.9 6.4E+02 0.014 25.4 11.4 44 326-369 286-333 (341)
15 COG5336 Uncharacterized protei 27.3 1.5E+02 0.0032 25.5 5.0 41 235-277 52-92 (116)
16 PF03606 DcuC: C4-dicarboxylat 26.6 8.4E+02 0.018 26.4 12.6 58 230-288 251-308 (465)
17 COG1297 Predicted membrane pro 26.1 6.8E+02 0.015 28.1 11.0 126 332-466 94-234 (624)
18 TIGR02908 CoxD_Bacillus cytoch 25.5 2.2E+02 0.0048 24.5 5.9 36 231-266 24-60 (110)
19 TIGR00728 OPT_sfam oligopeptid 24.0 1.1E+03 0.024 26.8 13.2 28 439-466 231-258 (654)
20 PF04657 DUF606: Protein of un 23.0 2.1E+02 0.0045 25.5 5.6 47 256-303 62-108 (138)
21 COG3238 Uncharacterized protei 21.5 3.4E+02 0.0073 24.8 6.6 68 235-303 42-113 (150)
22 PF12270 Cyt_c_ox_IV: Cytochro 20.6 6.2E+02 0.013 22.7 11.6 21 119-139 2-22 (137)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-97 Score=768.82 Aligned_cols=487 Identities=16% Similarity=0.202 Sum_probs=429.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccCCCCCCchHHHHHHHHhhccCCccccc-chhHHHHHHHHHHHHHHHHH-HHHhcCC
Q 010082 3 GLFILLGINFSFFSSVLYQVMILDYKLTYPSGTATAMLINSFHTNTGAELA-GKQVRCLGKYLSISFFWSCF-KWFFSGV 80 (518)
Q Consensus 3 ~~~~~~~~lG~~~Ag~lRr~lV~~~~l~~P~~la~a~l~~~lh~~~~~~~~-~~~~~~f~~~f~~~fv~~~~-~~i~p~l 80 (518)
-+.+++|++|||+||++||++|+|.+|.||++|++++|+|+||++|+++++ .+|+|||.++|+++|+|+|+ .+++|.|
T Consensus 185 ll~lttQ~lGyGwAGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~L 264 (761)
T KOG2262|consen 185 LLVLTTQLLGYGWAGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPIL 264 (761)
T ss_pred HHHHHHHHhcccHhhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHH
Confidence 467888999999999999999999999999999999999999997665544 58999999999999999998 5999987
Q ss_pred C---Ccccccc--c---cccccccc--cceeeecccc--ccccCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Q 010082 81 G---NSCGFDN--F---PSFGLTLF--KNTFYFDFSP--TYVGCGLICPHIVNCSVLLGAIISWGFLWPFISQHAGDWYP 148 (518)
Q Consensus 81 ~---~~~~~~~--~---~~~G~~~~--~~~~~~d~s~--~~iG~g~i~p~~~~~~~~~G~vl~~~il~P~~~~~~~~w~~ 148 (518)
+ .+||... . .++|+..| ..++++||+. +|+|+|+.+|+++.+|.++|.++..+|+.|++|++ |.|+.
T Consensus 265 s~~swvcW~~P~s~~~~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~-n~~~a 343 (761)
T KOG2262|consen 265 SSFSWVCWIWPSSITANQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWT-NTYDA 343 (761)
T ss_pred hhhheeeEeccccHHHHHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhc-cceec
Confidence 5 4888842 1 25666544 4579999997 58999999999999999999999999999999997 89988
Q ss_pred CCCCCCC--c-------------------chhhhhH----hhHHHHHHHHHH--HHHHHHHHHH----HHHHHHHHhhhC
Q 010082 149 ADLGSND--F-------------------KGLYGYK----VFIAISLILGDG--LYNLIKIITI----TVKEMWNRSTKD 197 (518)
Q Consensus 149 ~~~~~~~--~-------------------~~~~~y~----~~~~~~~~~~~g--~~~~~~~~~~----~~~~i~~~~~~~ 197 (518)
+++|+.+ . -++.+|+ +|++..+.+++| +.++.+.+.| ..||+|++.|+.
T Consensus 344 ~~fPI~Ss~lf~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~ 423 (761)
T KOG2262|consen 344 KYFPIFSSSLFDHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKA 423 (761)
T ss_pred ceeceecCcceecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhc
Confidence 7777411 0 1233565 578888888877 4555555554 469999987765
Q ss_pred CCCCCccccccchhhhhhhhhhhhhhhcccCCCchHHHHHHHHHHHHHHHhhhccccC--CchHHHHHHHHHHHHHHHhh
Q 010082 198 SKLPFVNDIQDTETSKLLLEQKEREIVFLKDGIPTWFAASGYVGLAAISTATIPTIFP--PLKWYLVLCSYLIAPALAFC 275 (518)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~~--~~p~w~~ilai~l~~i~~~~ 275 (518)
. ++++|.|++.|+||||||+|||.+.+++++++++++++.+.. |+|||++++|+++++++++|
T Consensus 424 ~---------------~k~~DiHtrlMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iP 488 (761)
T KOG2262|consen 424 F---------------NKKMDIHTRLMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIP 488 (761)
T ss_pred c---------------ccCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhcc
Confidence 3 246799999999999999999999999999999999988877 89999999999999999999
Q ss_pred hhhhhhccccccccchhHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCChHHHHHHHHHHHH
Q 010082 276 NSYGTGLTDWNLASTYGKIGLFIIASLVGTDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTA 355 (518)
Q Consensus 276 ~~~~~g~tg~~p~~~l~~i~~li~g~~~g~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~yl~~pPR~~f~~Q~iG~i 355 (518)
.|+++|+||++| |+|+++|+|+||+. ||+|+|||.||.||++++.||..++||+|+|||||+|||.||.+|++||+
T Consensus 489 igii~AtTNq~~--GLNiitE~i~Gy~~--PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~ti 564 (761)
T KOG2262|consen 489 IGIIQATTNQTP--GLNIITEYIIGYIY--PGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTI 564 (761)
T ss_pred HHHhhhhccCCc--cHHHHHHHHHHhhc--CCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHH
Confidence 999999999998 59999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHH-HHHHhhcCCCCC--CCCCCCCchhHHHHHHHhh-hcccC------CCCchhhHHHHHHHHHHHHHHHHHH
Q 010082 356 MGCVIAPLT-FWMYWTAFDIGS--PDGPYKAPYAVIFREMAIL-GIEGF------SELPKHCLALCCGFFVAALVINLLR 425 (518)
Q Consensus 356 vga~v~~~v-~~~l~~~~~i~~--~~~~~~~P~a~~~~~~a~~-g~~G~------~~lp~~~~~~~~~g~~lg~~l~~~~ 425 (518)
++++|+.+| .|++.++.|+|+ +++.|+||+.++++++|++ |.+|+ .+.++...+|+++|++.+++...++
T Consensus 565 vs~~Vn~gv~~W~m~~I~~iC~~~~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~ 644 (761)
T KOG2262|consen 565 VAGFVNLGVAWWLMYSIPNICTTDQNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQ 644 (761)
T ss_pred hheeeeHHhHHHHHhcccccccCCCCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHH
Confidence 999999999 789999999996 4578999999999999988 77773 3566777888889999999999999
Q ss_pred hhcccc-cccccccchhcccccccch----hhHHHHHHHHHHHHHHHHhCcCcccchhhhcchhhhhhhHhhHHHHHH-H
Q 010082 426 DATPTK-ISRFIPVPMAMAVPFYIGA----YFAIDMFVGTVILFIWELVNRKDSEDYAGAVASGLICGDGIWTIPSAI-L 499 (518)
Q Consensus 426 ~~~p~~-~~~~~p~~~~~~~g~~~p~----~~~~~~~vG~~~~~~~~r~~~~~~~ky~y~laagL~aG~ai~gviia~-~ 499 (518)
+.+||+ |.+.++.|+.+++...+|| ++++++++|.+++++++||++.||+||||++|||||+|.+++++++++ +
T Consensus 645 k~fPk~~w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv 724 (761)
T KOG2262|consen 645 KKFPKKKWIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCV 724 (761)
T ss_pred HhcchhhhhhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhhee
Confidence 999975 4676777999998888886 689999999999999999999999999999999999999999999986 7
Q ss_pred HhcCCCCCcce
Q 010082 500 SIFRVNPPVCM 510 (518)
Q Consensus 500 ~~~gv~~~~~~ 510 (518)
+..|++.+ ||
T Consensus 725 ~~~~~~~~-WW 734 (761)
T KOG2262|consen 725 QYPGISLN-WW 734 (761)
T ss_pred ccCCCccc-cc
Confidence 88899985 77
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=5.3e-94 Score=783.28 Aligned_cols=482 Identities=16% Similarity=0.209 Sum_probs=416.7
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhcccCCCCCCchHHHHHHHHhhccCCccc--ccc-hhHHHHHHHHHHHHHHHHH-HHH
Q 010082 1 MIGLFILLGINFSFFSSVLYQVMILDYKLTYPSGTATAMLINSFHTNTGAE--LAG-KQVRCLGKYLSISFFWSCF-KWF 76 (518)
Q Consensus 1 ~~~~~~~~~~lG~~~Ag~lRr~lV~~~~l~~P~~la~a~l~~~lh~~~~~~--~~~-~~~~~f~~~f~~~fv~~~~-~~i 76 (518)
+|.+++++|++|+++||++||++|+|++|+||+++++++|+++||++++++ +++ +|+|+|+++|+++|+|+|+ .++
T Consensus 135 ~il~~lstq~~G~g~Ag~lRr~lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~yl 214 (681)
T TIGR00727 135 QFLLSLSTQFIGFGFAGILRRFVVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYI 214 (681)
T ss_pred HHHHHHHHHHHHHHHHHHhhceEeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999865432 233 8999999999999999998 599
Q ss_pred hcCCC---Cccccc--cc---cccccccc--cce-eeecccc-c-cccCcccccHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010082 77 FSGVG---NSCGFD--NF---PSFGLTLF--KNT-FYFDFSP-T-YVGCGLICPHIVNCSVLLGAIISWGFLWPFISQHA 143 (518)
Q Consensus 77 ~p~l~---~~~~~~--~~---~~~G~~~~--~~~-~~~d~s~-~-~iG~g~i~p~~~~~~~~~G~vl~~~il~P~~~~~~ 143 (518)
+|.|+ ..||++ |. .+||+..| .++ +||||++ + +.|+|+++|+++++|+++|.++++++++|++||+
T Consensus 215 f~~Ls~f~w~cwi~P~n~~~~~i~g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~- 293 (681)
T TIGR00727 215 FQALSTFNWMTWIKPNNINLNQIFGGSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYS- 293 (681)
T ss_pred HHHhhhchhhhhccCcchhhhhhhccccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 99876 488874 21 25776554 457 8999998 3 6899999999999999999999999999999997
Q ss_pred CcccCCCCCCCCc---------------------chhhhhH----hhHHHHHHHHHHH--HHHHHHH----HHHHHHHHH
Q 010082 144 GDWYPADLGSNDF---------------------KGLYGYK----VFIAISLILGDGL--YNLIKII----TITVKEMWN 192 (518)
Q Consensus 144 ~~w~~~~~~~~~~---------------------~~~~~y~----~~~~~~~~~~~g~--~~~~~~~----~~~~~~i~~ 192 (518)
|.|+.+++|..+- -|.++|+ .|++++..+.+|+ +.+.+.+ ..+.|++++
T Consensus 294 N~w~~~~lPi~s~~~fd~~G~~Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~ 373 (681)
T TIGR00727 294 NTWYCQYLPISSNGLYDNFGHSYNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFN 373 (681)
T ss_pred ccccccccCCccchhhhcCCCccccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999888875320 0122454 4888888888774 4444444 345789988
Q ss_pred HhhhCCCCCCccccccchhhhhhhhhhhhhhhcccCCCchHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHH
Q 010082 193 RSTKDSKLPFVNDIQDTETSKLLLEQKEREIVFLKDGIPTWFAASGYVGLAAISTATIPTIFPPLKWYLVLCSYLIAPAL 272 (518)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~~~~p~w~~ilai~l~~i~ 272 (518)
++|++ +++|+|.++|++|||||+|||++++++++++++++++.+.+++|||++++|+++++++
T Consensus 374 ~~~~~-----------------~~~D~h~rlM~~Y~evP~WWy~~~l~is~~~~~~~v~~~~t~lP~W~~~lal~l~~i~ 436 (681)
T TIGR00727 374 ALKDD-----------------DYPDPHSNLMKAYKEVPDWWYLAVFLGFFGMGIATVEHWPTETPVWGLFVCLIFNFVF 436 (681)
T ss_pred HHhcC-----------------CCCChhHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHH
Confidence 87632 4579999999999999999999999999999999998877799999999999999999
Q ss_pred HhhhhhhhhccccccccchhHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCChHHHHHHHHH
Q 010082 273 AFCNSYGTGLTDWNLASTYGKIGLFIIASLVGTDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLL 352 (518)
Q Consensus 273 ~~~~~~~~g~tg~~p~~~l~~i~~li~g~~~g~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~yl~~pPR~~f~~Q~i 352 (518)
.+|.++++|+||+++ ++|+++|+|+|++. ||+|+|||+||++++++.+||.+++||||+|||+|+|||+||++|++
T Consensus 437 ~iP~~~i~a~t~~~~--~ln~l~eli~Gy~~--PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~ 512 (681)
T TIGR00727 437 LIPTTILQATTNISF--GLNVLTEFIVGYAL--PGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCV 512 (681)
T ss_pred HHhhhheEeecCCcc--chhHHHHHHhhhcc--CCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHH
Confidence 999999999999996 59999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHH-HHHHhhcCCCCCCC--CCCCCchhHHHHHHHhh-hcccC------CCCchhhHHHHHHHHHHHHHHH
Q 010082 353 GTAMGCVIAPLT-FWMYWTAFDIGSPD--GPYKAPYAVIFREMAIL-GIEGF------SELPKHCLALCCGFFVAALVIN 422 (518)
Q Consensus 353 G~ivga~v~~~v-~~~l~~~~~i~~~~--~~~~~P~a~~~~~~a~~-g~~G~------~~lp~~~~~~~~~g~~lg~~l~ 422 (518)
|+++|++|++++ .+++.+++|+||++ ++|+||++++++++|++ |..|+ ++.++...+++++|++++++..
T Consensus 513 gtl~~~~v~~~v~~~~l~~i~~~c~~~~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~ 592 (681)
T TIGR00727 513 ATIWQIFVQIGVLNWAIGNIDNFCTADQNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFW 592 (681)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCCCCCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999 57888999999754 79999999999999987 66663 4567777778888888888888
Q ss_pred HHHhhcccccccccccchhcccccccch----hhHHHHHHHHHHHHHHHHhCcCcccchhhhcchhhhhhhHhhHHHHHH
Q 010082 423 LLRDATPTKISRFIPVPMAMAVPFYIGA----YFAIDMFVGTVILFIWELVNRKDSEDYAGAVASGLICGDGIWTIPSAI 498 (518)
Q Consensus 423 ~~~~~~p~~~~~~~p~~~~~~~g~~~p~----~~~~~~~vG~~~~~~~~r~~~~~~~ky~y~laagL~aG~ai~gviia~ 498 (518)
+++|++||++.|++|+|+.++....+|+ +++.+..+|.++++++|||+++||+||||+++||||+|++++++++++
T Consensus 593 ~~~r~~P~~~~~~~n~pv~~~~~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff 672 (681)
T TIGR00727 593 LVWKKWPKFYPRYLDWPMLFVGTGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFF 672 (681)
T ss_pred HHHHhcchhhhhhCCccHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHhee
Confidence 9999999888888888898877445543 367788999999999999999999999999999999999999999984
Q ss_pred -HHhcCC
Q 010082 499 -LSIFRV 504 (518)
Q Consensus 499 -~~~~gv 504 (518)
++..|+
T Consensus 673 ~v~~~~~ 679 (681)
T TIGR00727 673 CLQLKDT 679 (681)
T ss_pred EEEeCCC
Confidence 444443
No 3
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=8.3e-83 Score=706.11 Aligned_cols=482 Identities=26% Similarity=0.389 Sum_probs=402.4
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhcccCCCCCCchHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHHHHH-HHHhcC
Q 010082 1 MIGLFILLGINFSFFSSVLYQVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKQVRCLGKYLSISFFWSCF-KWFFSG 79 (518)
Q Consensus 1 ~~~~~~~~~~lG~~~Ag~lRr~lV~~~~l~~P~~la~a~l~~~lh~~~~~~~~~~~~~~f~~~f~~~fv~~~~-~~i~p~ 79 (518)
++.+.+.+|++|+++|+|+||++|+|++|+||+++|+++++++||++++.+++++|+|+|.++|.++++|+|+ .+++|.
T Consensus 106 ~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~alh~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 185 (624)
T PF03169_consen 106 LILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINALHSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPA 185 (624)
T ss_pred HHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHhccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567889999999999999999999999999999999999999999765566789999999999999999996 578886
Q ss_pred CC---Cccccccc-cccccccccceeeeccccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCC
Q 010082 80 VG---NSCGFDNF-PSFGLTLFKNTFYFDFSPTYVGCGLICPHIVNCSVLLGAIISWGFLWPFISQHAGDWYPADLGSND 155 (518)
Q Consensus 80 l~---~~~~~~~~-~~~G~~~~~~~~~~d~s~~~iG~g~i~p~~~~~~~~~G~vl~~~il~P~~~~~~~~w~~~~~~~~~ 155 (518)
++ ..||.... +......+.+.++||||++++|+|+++|+++++|+++|.+++|+++.|++++++|.|++.+.|..+
T Consensus 186 l~~~~~~~w~~~~~~~~~~~~~~~~~~~dws~~~~g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s 265 (624)
T PF03169_consen 186 LSSFSWPCWIAPNNPWLNNLFGGWSFSFDWSPILIGSGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNS 265 (624)
T ss_pred hcccccceeeccccchHhhhcccceeeEeecHHhcCCCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccc
Confidence 64 47776421 111111234569999999999999999999999999999999999999999876788877776321
Q ss_pred ---------cchhhhhHhhHHHHHHHHHHHHHH------H---HHH----HHHHHHHHHHhhhCCCCCCccccccchhhh
Q 010082 156 ---------FKGLYGYKVFIAISLILGDGLYNL------I---KII----TITVKEMWNRSTKDSKLPFVNDIQDTETSK 213 (518)
Q Consensus 156 ---------~~~~~~y~~~~~~~~~~~~g~~~~------~---~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 213 (518)
.+..++|.+|.+.+.+...+...+ . +.+ .++.|+++++++++++ +.++.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 337 (624)
T PF03169_consen 266 NSLFDNNGSSDGTLNWTKYIGYGPMYGSGLFALSYGWSFAALTASIVHAILWHWKAIWQAFKQSKS--------SQRSSK 337 (624)
T ss_pred hhhhhhcCccccccCHHHHHHHHHHHHhHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcc--------cccccc
Confidence 122346889999999998876666 2 222 3345566655543321 111123
Q ss_pred hhhhhhhhhhhcccCCCchHHHHHHHHHHHHHHHhhhcccc--CCchHHHHHHHHHHHHHHHhhhhhhhhccccccccch
Q 010082 214 LLLEQKEREIVFLKDGIPTWFAASGYVGLAAISTATIPTIF--PPLKWYLVLCSYLIAPALAFCNSYGTGLTDWNLASTY 291 (518)
Q Consensus 214 ~~~~d~~~~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~--~~~p~w~~ilai~l~~i~~~~~~~~~g~tg~~p~~~l 291 (518)
+++||+|+++|++|||||+|||+.++++++++++++++..+ .++|+|..++++++++++++|.++++|+||+||.+++
T Consensus 338 ~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~ 417 (624)
T PF03169_consen 338 SSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGL 417 (624)
T ss_pred cccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhh
Confidence 46789999999999999999999999999999999998888 6899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCChHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 010082 292 GKIGLFIIASLVGTDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVIAPLTFWMYWTA 371 (518)
Q Consensus 292 ~~i~~li~g~~~g~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~yl~~pPR~~f~~Q~iG~ivga~v~~~v~~~l~~~ 371 (518)
++++|+++|++. |+++++||+++++++++++||+|++||||+|||+|+|||+||++|++|+++|++++++++.++++.
T Consensus 418 ~~~sqli~g~~~--pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~ 495 (624)
T PF03169_consen 418 NILSQLIFGLLL--PGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQA 495 (624)
T ss_pred hHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999988666
Q ss_pred CCCCCC---CCCCCCchhHHHHHHHhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhcc----c
Q 010082 372 FDIGSP---DGPYKAPYAVIFREMAILGIEGFSELPKHCLALCCGFFVAALVINLLRDATPTKISRFIPVPMAMA----V 444 (518)
Q Consensus 372 ~~i~~~---~~~~~~P~a~~~~~~a~~g~~G~~~lp~~~~~~~~~g~~lg~~l~~~~~~~p~~~~~~~p~~~~~~----~ 444 (518)
|++..+ ++++++|++..|.+++.-...+..+.|+. ....++++|++++++.+.. +|++|.+++++ +
T Consensus 496 ~~~~~~~~~~~~~~ap~a~~~aav~~g~~~~~~~~~~~---~~~~~~~~G~~~~i~~~l~----~~~~P~~~~~~~~~~~ 568 (624)
T PF03169_consen 496 YPCGPDQGDSFSCPAPQAFAWAAVAWGLIGPQRGLPYS---ALPWGFLIGAVLPILFWLL----QRKFPSPLAFGGASSI 568 (624)
T ss_pred hccCccccccCcCcchHHHHHHHHHHHhcCCcccchHH---HHHHHHHHHHHHHHHHHHH----HhhCChhheeeecccc
Confidence 655422 46777788888877764332222367777 4455778888888886544 33477678888 9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhCcCcccchhhhcchhhhhhhHhhHHHHHHH
Q 010082 445 PFYIGAYFAIDMFVGTVILFIWELVNRKDSEDYAGAVASGLICGDGIWTIPSAIL 499 (518)
Q Consensus 445 g~~~p~~~~~~~~vG~~~~~~~~r~~~~~~~ky~y~laagL~aG~ai~gviia~~ 499 (518)
++++|+++++++++|+++++++|||+++||+||||++|||||+||++++++++++
T Consensus 569 ~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~l~~li~~~~ 623 (624)
T PF03169_consen 569 GFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEALMGLIIAFL 623 (624)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999854
No 4
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=4.2e-79 Score=677.99 Aligned_cols=472 Identities=26% Similarity=0.408 Sum_probs=363.9
Q ss_pred HHHHHHH--HHHHHHHHhhhhhcccCCCCCCchHHHHHHHHhhccC----CcccccchhHHHHHHHHHHHHHHHHHHHHh
Q 010082 4 LFILLGI--NFSFFSSVLYQVMILDYKLTYPSGTATAMLINSFHTN----TGAELAGKQVRCLGKYLSISFFWSCFKWFF 77 (518)
Q Consensus 4 ~~~~~~~--lG~~~Ag~lRr~lV~~~~l~~P~~la~a~l~~~lh~~----~~~~~~~~~~~~f~~~f~~~fv~~~~~~i~ 77 (518)
++++.|+ +|+++|+++||++|+|++|+||+++|+++++++||++ ++.+..|..+..+.+.|..++.|.|++|++
T Consensus 127 ~~~~~~~~~lG~~~a~~lRr~lV~~~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r~l~~~~~~~f~~~~~~~~~~~~~ 206 (654)
T TIGR00728 127 LVWSTQLGFLGFGFAGLLRRALVVPAKLPWPSGLATAELFKALHGKFHTANGDTIAKNLLRVLLKYFSSSFLWSFVSWFF 206 (654)
T ss_pred HHHHHHHHHhHHhhHHHhhhheeCcccccCCcccHHHHHHHHhhhccCccCCCccchhHHHhHHHHHHHHHHHHHHHHHh
Confidence 4555565 9999999999999999999999999999999998653 111112222344557788889999999999
Q ss_pred cCCCCccccccccccccccccceeeecccc--ccccCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCC
Q 010082 78 SGVGNSCGFDNFPSFGLTLFKNTFYFDFSP--TYVGCGLICPHIVNCSVLLGAIISWGFLWPFISQHAGDWYPADLGSND 155 (518)
Q Consensus 78 p~l~~~~~~~~~~~~G~~~~~~~~~~d~s~--~~iG~g~i~p~~~~~~~~~G~vl~~~il~P~~~~~~~~w~~~~~~~~~ 155 (518)
|... ..++||+ .+.++++|||++ +++|+|+++|+++++|+++|++++|+++.|++|++ |.|.+++.|.++
T Consensus 207 p~~~------~~~~fgg-lg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~-n~~~~~~~p~~s 278 (654)
T TIGR00728 207 PGFT------AFQTFGG-LGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYK-NTWPADADPIDS 278 (654)
T ss_pred cCCc------ccccccc-ccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhc-CccccccCCCcc
Confidence 9621 2245652 223456777765 58999999999999999999999999999999987 777655555432
Q ss_pred cchhhhhH-hhHHHHHHHHHHHHHH-------------------------H----HHHHHHHHHHHHHhhhCCCCCCccc
Q 010082 156 FKGLYGYK-VFIAISLILGDGLYNL-------------------------I----KIITITVKEMWNRSTKDSKLPFVND 205 (518)
Q Consensus 156 ~~~~~~y~-~~~~~~~~~~~g~~~~-------------------------~----~~~~~~~~~i~~~~~~~~~~~~~~~ 205 (518)
...++++. +|.+++.+++++++++ . ....++.|++++++|++++ +.
T Consensus 279 ~~~~~~~~~~y~~~~~il~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~ 354 (654)
T TIGR00728 279 SSTIDSTGVRYNSVGLIVVDGLWTLVKPLYPIYSPLVLSIDFYALLFNAFSDTIYSFALAHGRDIISARRDHYK----LG 354 (654)
T ss_pred hhhhcCCCceeeeeeEEEeCCCceecHHHHHHhCcceeeHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh----cc
Confidence 22222222 2444444443332111 1 1123345666666554321 00
Q ss_pred cccchhhhhhhhhhhhhhhcccCCCchHHHHHHHHHHHHHHHhhhcccc--CCchHHHHHHHHHHHHHHHhhhhhhhhcc
Q 010082 206 IQDTETSKLLLEQKEREIVFLKDGIPTWFAASGYVGLAAISTATIPTIF--PPLKWYLVLCSYLIAPALAFCNSYGTGLT 283 (518)
Q Consensus 206 ~~~~~~~~~~~~d~~~~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~--~~~p~w~~ilai~l~~i~~~~~~~~~g~t 283 (518)
+|.+++..++++|+ +|++|||||+|||+.++++++++++++++.++ +++|||++++++++++++++|.++++|+|
T Consensus 355 ~~~~~~~~~~~~d~---~~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~t 431 (654)
T TIGR00728 355 RDDHVRLLSRDEDL---KVKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGIT 431 (654)
T ss_pred CCCChHHHhhcccc---cccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEee
Confidence 00011011122233 26789999999999999999999998887665 58999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCChHHHHHHHHHHHHHHHhHHHH
Q 010082 284 DWNLASTYGKIGLFIIASLVGTDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVIAPL 363 (518)
Q Consensus 284 g~~p~~~l~~i~~li~g~~~g~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~yl~~pPR~~f~~Q~iG~ivga~v~~~ 363 (518)
||.+++++++|+++|+++ ||+|++||+++++++++++||+|++||||+|||+|+|||+||++|++|+++|++++++
T Consensus 432 --np~~~l~~~~~li~g~~~--pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~ 507 (654)
T TIGR00728 432 --NPVSGLNIITELIIGYIL--PGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAP 507 (654)
T ss_pred --cccchhhHHHHHhheeec--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCchhHHHHHHHhh-hccc---CC-C-CchhhHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 010082 364 TFWMYWTAFDIGSPDGPYKAPYAVIFREMAIL-GIEG---FS-E-LPKHCLALCCGFFVAALVINLLRDATPTKISRFIP 437 (518)
Q Consensus 364 v~~~l~~~~~i~~~~~~~~~P~a~~~~~~a~~-g~~G---~~-~-lp~~~~~~~~~g~~lg~~l~~~~~~~p~~~~~~~p 437 (518)
++.++.+++++. +++|+||++++|+++|++ +..| .+ + .+....+++++| ++.++..+.+|++|| ++|++|
T Consensus 508 v~~~~~~~~~~~--~~~~~~p~a~~~~~aa~~~g~~Gp~~f~~~~~y~~~~~~~l~G-~~~i~~~~~~~~~p~-~~~~~~ 583 (654)
T TIGR00728 508 VLEWLYHAIGNQ--NNNFTCPNALVFYNASLIWGVIGPKIFSGKGLYCGLMWFFLVG-VGAVLVWLVRKLFPK-WIKYIN 583 (654)
T ss_pred HHHHHHhccCCC--CCCccCCcccchhhheeeeccccchhcCCCCccHHHHHHHHHH-HHHHHHHHHHHHccc-hhhhcC
Confidence 998888888864 568999999999999977 5566 32 2 333333444444 455555556667776 667899
Q ss_pred cchhcccccccchhhHHHHH----HHHHHHHHHHHhCcCcc--cchhhhcchhhhhhhHhhHHHHHH
Q 010082 438 VPMAMAVPFYIGAYFAIDMF----VGTVILFIWELVNRKDS--EDYAGAVASGLICGDGIWTIPSAI 498 (518)
Q Consensus 438 ~~~~~~~g~~~p~~~~~~~~----vG~~~~~~~~r~~~~~~--~ky~y~laagL~aG~ai~gviia~ 498 (518)
+|+++++++++|+++++.++ +|+++++++|||+++|| +||||++|||||+||+|+++++++
T Consensus 584 ~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff 650 (654)
T TIGR00728 584 PPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFF 650 (654)
T ss_pred HHHhhhhhhccCCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHH
Confidence 89999999999988777777 99999999999988876 999999999999999999999974
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=6.6e-67 Score=566.70 Aligned_cols=461 Identities=18% Similarity=0.240 Sum_probs=357.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhcccCCCCCCchHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHHHHHHHH--hc
Q 010082 1 MIGLFILLGINFSFFSSVLYQVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKQVRCLGKYLSISFFWSCFKWF--FS 78 (518)
Q Consensus 1 ~~~~~~~~~~lG~~~Ag~lRr~lV~~~~l~~P~~la~a~l~~~lh~~~~~~~~~~~~~~f~~~f~~~fv~~~~~~i--~p 78 (518)
|+.+.++.+++|+.|+.||||++|++++|+|||++|||+++++. +|+ + ++++.|.+...+..+.+|.++.-+ +|
T Consensus 94 ~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~~g--~~g-~-~~~~~~~l~~g~~~s~~~~~~~~~~~~~ 169 (591)
T TIGR00733 94 TTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLKAG--DKA-R-NGTGAKPIAYGGILASIYAFLGSLRVWS 169 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHcc--ccc-c-chhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 35677888999999999999999999999999999999999974 222 1 345677777788888888877311 11
Q ss_pred CCCCccccccccccccccccceeeeccccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCCc-c
Q 010082 79 GVGNSCGFDNFPSFGLTLFKNTFYFDFSPTYVGCGLICPHIVNCSVLLGAIISWGFLWPFISQHAGDWYPADLGSNDF-K 157 (518)
Q Consensus 79 ~l~~~~~~~~~~~~G~~~~~~~~~~d~s~~~iG~g~i~p~~~~~~~~~G~vl~~~il~P~~~~~~~~w~~~~~~~~~~-~ 157 (518)
. + .. ..+........+++||||+++|.|+++|+++++++++|++++|+++.|++..+ .|+|.+.++.+. .
T Consensus 170 ~-~----~~--~~~~~g~~~~~~~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~--~~~~~~~~~~~~~~ 240 (591)
T TIGR00733 170 G-T----LS--AAKLVGRRALYFGSDLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAK--MGSPGDLSALDLAW 240 (591)
T ss_pred c-h----HH--HHHhcCCcceEEEecccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCccHHHHHH
Confidence 1 0 00 00101112346888999999999999999999999999999999999999864 577655443221 2
Q ss_pred hhh-hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccccchhhhhhhhhhhhhhhcccCCCchHHHH
Q 010082 158 GLY-GYKVFIAISLILGDGLYNLIKIITITVKEMWNRSTKDSKLPFVNDIQDTETSKLLLEQKEREIVFLKDGIPTWFAA 236 (518)
Q Consensus 158 ~~~-~y~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~y~~vP~ww~~ 236 (518)
.++ +|.||+|+++|++++++++.+......+.+++.++.+++ +++.+|.+| ..+|+|.|+..
T Consensus 241 ~vw~~~vR~iGvg~m~~~gl~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~r----~~~dip~~~v~ 303 (591)
T TIGR00733 241 TIWSTKVRYIGVGAIVVAALWTLLKLRGPIARGIKAGLEAARR-------------RQAGEAVLR----TEEDLPINIVL 303 (591)
T ss_pred HHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------ccccccccc----ccccccHHHHH
Confidence 234 467899999999999999998877667777666655431 001112222 34689999754
Q ss_pred HHHHHHHHHHHhhhccccCCch--------H-HHHHHHHHHHHHHHhhhhhhhhc--cccccccchhHHHHHHHHHhc--
Q 010082 237 SGYVGLAAISTATIPTIFPPLK--------W-YLVLCSYLIAPALAFCNSYGTGL--TDWNLASTYGKIGLFIIASLV-- 303 (518)
Q Consensus 237 ~~lvv~~~~~~~~~~~~~~~~p--------~-w~~ilai~l~~i~~~~~~~~~g~--tg~~p~~~l~~i~~li~g~~~-- 303 (518)
.++++ .++. ..+..+ +.| + .+.+++++++++++..++|+.|+ ||+||+|++++++|++++.+.
T Consensus 304 ~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~ 379 (591)
T TIGR00733 304 TLVAL-FVIP--LADFLL-YAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKG 379 (591)
T ss_pred HHHHH-HHHH--HHHHhc-CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 44332 2222 212222 322 2 46678888889999999999999 778999999999999999887
Q ss_pred -C-------CCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCChHHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCC
Q 010082 304 -G-------TDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVIAPLTFWMYWTAFDIG 375 (518)
Q Consensus 304 -g-------~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~yl~~pPR~~f~~Q~iG~ivga~v~~~v~~~l~~~~~i~ 375 (518)
| .|++..+|++.+++.+.+++||+|++||||+||++|++||+||++|++|+++|++++++++.++.++|++.
T Consensus 380 ~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ayg~~ 459 (591)
T TIGR00733 380 LGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLLIKAYGIA 459 (591)
T ss_pred cCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 15779999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C-----CCCCCCCchhHHHHHHHhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhcccccccch
Q 010082 376 S-----PDGPYKAPYAVIFREMAILGIEGFSELPKHCLALCCGFFVAALVINLLRDATPTKISRFIPVPMAMAVPFYIGA 450 (518)
Q Consensus 376 ~-----~~~~~~~P~a~~~~~~a~~g~~G~~~lp~~~~~~~~~g~~lg~~l~~~~~~~p~~~~~~~p~~~~~~~g~~~p~ 450 (518)
+ ++++|++|||.+|+++++-... +.+||. +.++|+++|+++.++++.++|+++|+..+++++++|+|+|+
T Consensus 460 ~~~~~~~~~~l~APqA~l~~ava~gi~~--~~l~~~---~i~~ga~~g~~l~~~~~~~~~~~~~~~~p~lavgig~yLP~ 534 (591)
T TIGR00733 460 GTPTAKGENALPAPQAFLMAAVTEGVFT--GTLEWT---MVFIGAGIGIALIIIDEILAKRGSKFRTPVMAVGVGIYLPL 534 (591)
T ss_pred ccccCCCccccCCCHHHHHHHHHhhhcC--CCccHH---HHHHHHHHHHHHHHHHHHhhhcccccCCchhHHHHHhhcch
Confidence 3 4678999999999999842222 356665 45667889999999998877655444444789999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCcCc------ccchhhhcchhhhhhhHhhHHHHHHHH
Q 010082 451 YFAIDMFVGTVILFIWELVNRKD------SEDYAGAVASGLICGDGIWTIPSAILS 500 (518)
Q Consensus 451 ~~~~~~~vG~~~~~~~~r~~~~~------~~ky~y~laagL~aG~ai~gviia~~~ 500 (518)
+++.++++|++++|+++||+++. .++|++++||||++||+++|++++++.
T Consensus 535 ~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~~~ 590 (591)
T TIGR00733 535 SLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAAII 590 (591)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHHHh
Confidence 99999999999999999976532 246899999999999999999998653
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.1e-51 Score=424.79 Aligned_cols=462 Identities=19% Similarity=0.277 Sum_probs=342.5
Q ss_pred HHHHHHHHHHHHHhhhhhcccCCCCCCchHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 010082 6 ILLGINFSFFSSVLYQVMILDYKLTYPSGTATAMLINSFHTNTGAELAGKQVRCLGKYLSISFFWSCFKWFFSGVGNSCG 85 (518)
Q Consensus 6 ~~~~~lG~~~Ag~lRr~lV~~~~l~~P~~la~a~l~~~lh~~~~~~~~~~~~~~f~~~f~~~fv~~~~~~i~p~l~~~~~ 85 (518)
-+.+++|+.|+.||||.+|.++++||||+.|+||++++..++|+++ +..|-..+......++.+.. ..+. .
T Consensus 113 ~lggiLGvlftiPLRra~Iv~skLPyPeGvAaAEvL~~g~~~~gd~---~g~~~i~~g~~~~~~~~~l~---~g~~---~ 183 (624)
T COG1297 113 ALGGILGVLFTIPLRRAMIVESKLPYPEGVAAAEVLKAGNQREGDA---SGIKLIALGGALAALYSLLA---SGLR---V 183 (624)
T ss_pred HHHhhcceEEEEEeeeeeeccCCCCCCCchhHHHHHHhcCCCCCCc---ccchhhhhhhHHHHHHHHHh---ccce---e
Confidence 4568999999999999999999999999999999999987555543 23334444444555555542 1100 0
Q ss_pred ccc-c-cccccccccceeeeccccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCC-cchhh-h
Q 010082 86 FDN-F-PSFGLTLFKNTFYFDFSPTYVGCGLICPHIVNCSVLLGAIISWGFLWPFISQHAGDWYPADLGSND-FKGLY-G 161 (518)
Q Consensus 86 ~~~-~-~~~G~~~~~~~~~~d~s~~~iG~g~i~p~~~~~~~~~G~vl~~~il~P~~~~~~~~w~~~~~~~~~-~~~~~-~ 161 (518)
+++ . ..|........+..|.|++++|.|+++|..+.+.+++|.+++|++..|++-+ ..|.|++....+ -..++ +
T Consensus 184 ~~~~~~~~~~~~~~~~~lg~~~S~AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~--~~~~p~~~~~~~~a~~vW~s 261 (624)
T COG1297 184 IASSLSAAFSVGRAAFALGLGLSLALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTL--IVPGPSDQEAGVQAWKVWSS 261 (624)
T ss_pred ehhhHHHHHHhcchhhhhcccccHHHhCceEEecchHHHHHHHHHHHHHHHHHHHHHh--cccCCCchhHHHHHHHHhhh
Confidence 000 0 0111111123577888999999999999999999999999999999999965 355553221100 02233 3
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccccchhhhhhhhhhhhhhhcccCCCchHHHHHHHHH
Q 010082 162 YKVFIAISLILGDGLYNLIKIITITVKEMWNRSTKDSKLPFVNDIQDTETSKLLLEQKEREIVFLKDGIPTWFAASGYVG 241 (518)
Q Consensus 162 y~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~y~~vP~ww~~~~lvv 241 (518)
+.+|++++.+...+++++.+...+..+.+++.++..+. +++.....|+ ++|+|..|-...++
T Consensus 262 ~VrfIGaG~i~i~~~wtl~~l~~pi~~gi~~~f~~~r~-------------~~~~~~~~rt----e~Dl~~~~~~~~~~- 323 (624)
T COG1297 262 KVRFIGAGAIAIAAIWTLISLLGPILRGIKATFESARG-------------RRRAGAVSRT----ERDLPPKLVLLVLL- 323 (624)
T ss_pred eeEEeehhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc-------------ccccccccch----hhcCChhhHHHHHH-
Confidence 56899999999999999988877888888877765541 0011111133 35888887765533
Q ss_pred HHHHHHhhhccccC------Cch----HHHHHHHHHHHHHHHhhhhhhhhcccc--ccccchhHHHHHHHHHhc---C--
Q 010082 242 LAAISTATIPTIFP------PLK----WYLVLCSYLIAPALAFCNSYGTGLTDW--NLASTYGKIGLFIIASLV---G-- 304 (518)
Q Consensus 242 ~~~~~~~~~~~~~~------~~p----~w~~ilai~l~~i~~~~~~~~~g~tg~--~p~~~l~~i~~li~g~~~---g-- 304 (518)
+..+.+......+. ... .-+.++++++++.+.-.+++++|..|. +|+|+++++++++.+.++ |
T Consensus 324 ~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~ 403 (624)
T COG1297 324 ATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQS 403 (624)
T ss_pred HHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhccc
Confidence 34444443322221 112 345566677788888899999999877 899999999988886555 3
Q ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCChHHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCC
Q 010082 305 ---------TDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVIAPLTFWMYWTAFDIG 375 (518)
Q Consensus 305 ---------~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~yl~~pPR~~f~~Q~iG~ivga~v~~~v~~~l~~~~~i~ 375 (518)
+|....++++.+++.+.++.+++|++|||||||++|++||+||.+|++|+++|+++..+|+.+++++|++.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aYgf~ 483 (624)
T COG1297 404 GGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAYGFA 483 (624)
T ss_pred cccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCcC
Confidence 13445889999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C-C---CCCCCCchhHHHHHHHhhhcccC--CCCchhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhcccccccc
Q 010082 376 S-P---DGPYKAPYAVIFREMAILGIEGF--SELPKHCLALCCGFFVAALVINLLRDATPTKISRFIPVPMAMAVPFYIG 449 (518)
Q Consensus 376 ~-~---~~~~~~P~a~~~~~~a~~g~~G~--~~lp~~~~~~~~~g~~lg~~l~~~~~~~p~~~~~~~p~~~~~~~g~~~p 449 (518)
. + ..+.++||+..+.+.+ +|. +.+.|. ..+.+..+|+.+..+.++.++++.|+.++++++++|.|+|
T Consensus 484 ga~~r~~~~l~apqa~lma~ia----~Gvf~~~lew~---mi~~g~~~gi~lI~id~~l~~~~~~~~lpvlAvGvGIylP 556 (624)
T COG1297 484 GAPPRQGMDLAAPQATLMATIA----KGVFTGNLEWS---MILAGAGIGIVLIGIDERLKGRGGKLRLPVLAVGVGIYLP 556 (624)
T ss_pred CCCCCCCCCCcchHHHHHHHHh----cccCCCCcchH---HHHHHHhHhheeeeccHHHhcCCccccccceeeeeeeecC
Confidence 3 1 1238999999997776 563 567777 3345666777777777666666666665588999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCc-------CcccchhhhcchhhhhhhHhhHHHHHHHHhcC
Q 010082 450 AYFAIDMFVGTVILFIWELVNR-------KDSEDYAGAVASGLICGDGIWTIPSAILSIFR 503 (518)
Q Consensus 450 ~~~~~~~~vG~~~~~~~~r~~~-------~~~~ky~y~laagL~aG~ai~gviia~~~~~g 503 (518)
|+.+.++++|++.+|.++|+.+ +.-++.++++||||++||+++|++++.+.+.+
T Consensus 557 ~s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~ 617 (624)
T COG1297 557 PSLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVITALIIVGS 617 (624)
T ss_pred hhhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHHHHHheec
Confidence 9999999999999999988733 34567899999999999999999999877653
No 7
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=93.47 E-value=12 Score=41.83 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=83.8
Q ss_pred CCChHHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHhhhcccCCCCchhhHHHHHHHHHHHH
Q 010082 340 LSSAKSMFVSQLLGTAMGCVIAPLTFWMYWTAFDIGSPDGPYKAPYAVIFREMAILGIEGFSELPKHCLALCCGFFVAAL 419 (518)
Q Consensus 340 ~~pPR~~f~~Q~iG~ivga~v~~~v~~~l~~~~~i~~~~~~~~~P~a~~~~~~a~~g~~G~~~lp~~~~~~~~~g~~lg~ 419 (518)
..|...+...=+.|.++|.+...+.+..+...++. .||...|.+- .=+.+.+|. .- .+.. ..+.+++++.
T Consensus 88 ~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L-----~fP~G~A~Ae--~l~~g~~g~-~~-~~~~-~l~~g~~~s~ 157 (591)
T TIGR00733 88 EFPYWITTVICALGGSLGVLFTIPLRRAFVVESKL-----PYPEGVACAE--VLKAGDKAR-NG-TGAK-PIAYGGILAS 157 (591)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-----CCCCHHHHHH--HHHcccccc-ch-hhHH-HHHHHHHHHH
Confidence 34667777777899999999999997666443222 3444333321 111121210 01 1212 2334555555
Q ss_pred HHHHHH--hhccc---cc-------ccc--cccchhcccccccchhhHHHHHHHHHHHHHH-----HHh-C-cC----c-
Q 010082 420 VINLLR--DATPT---KI-------SRF--IPVPMAMAVPFYIGAYFAIDMFVGTVILFIW-----ELV-N-RK----D- 473 (518)
Q Consensus 420 ~l~~~~--~~~p~---~~-------~~~--~p~~~~~~~g~~~p~~~~~~~~vG~~~~~~~-----~r~-~-~~----~- 473 (518)
+..++. +.+|. .+ .++ -.+|..+|.|+..++..+..+++|+++.|.+ +++ . +. +
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~~~~~~~~~ 237 (591)
T TIGR00733 158 IYAFLGSLRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGSPGDLSALD 237 (591)
T ss_pred HHHHHHHhccCCchHHHHHhcCCcceEEEecccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHH
Confidence 544432 11221 01 011 3458889999999999999999999999874 221 1 11 0
Q ss_pred -----ccchhhhcchhhhhhhHhhHHHHH
Q 010082 474 -----SEDYAGAVASGLICGDGIWTIPSA 497 (518)
Q Consensus 474 -----~~ky~y~laagL~aG~ai~gviia 497 (518)
|.+|---++.|.+.++++..++..
T Consensus 238 ~~~~vw~~~vR~iGvg~m~~~gl~~l~~~ 266 (591)
T TIGR00733 238 LAWTIWSTKVRYIGVGAIVVAALWTLLKL 266 (591)
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 222211258999999999998753
No 8
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=85.22 E-value=30 Score=38.98 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCc--hhHHHHHHHhhhcccC-CCCchhhHHHHHHHHHHH
Q 010082 342 SAKSMFVSQLLGTAMGCVIAPLTFWMYWTAFDIGSPDGPYKAP--YAVIFREMAILGIEGF-SELPKHCLALCCGFFVAA 418 (518)
Q Consensus 342 pPR~~f~~Q~iG~ivga~v~~~v~~~l~~~~~i~~~~~~~~~P--~a~~~~~~a~~g~~G~-~~lp~~~~~~~~~g~~lg 418 (518)
|+-.+...-+.+.++|...+...+..+.+ +++-.||.. ++.+..+.. .+. .....+...++.++++++
T Consensus 102 ~~~~~~l~~~~~~~lG~~~a~~lR~~lV~-----~~~l~fP~~~a~a~~i~alh----~~~~~~~~~~~~~~~~~~~~~~ 172 (624)
T PF03169_consen 102 SFGYLILWTLSTQLLGYGFAGPLRRFLVY-----PEKLPFPSGLATAELINALH----SGGGWREAKSRAKFFGIAFLGS 172 (624)
T ss_pred hHHHHHHHHHHHHHHHHhhheeccccEEe-----cccccCcchhHHHHHHHHhc----cCccchhhhhhHhHHHHHHHHH
Confidence 45555555555555555555554333322 122345542 344443332 111 111223344556677777
Q ss_pred HHHHHHHh-hccc----cc---------------cc---cc-ccchhcccccccchhhHHHHHHHHHHHHHH
Q 010082 419 LVINLLRD-ATPT----KI---------------SR---FI-PVPMAMAVPFYIGAYFAIDMFVGTVILFIW 466 (518)
Q Consensus 419 ~~l~~~~~-~~p~----~~---------------~~---~~-p~~~~~~~g~~~p~~~~~~~~vG~~~~~~~ 466 (518)
.+..++.. .+|- .+ .. .+ .+++.++.|+..|......+++|.++.|++
T Consensus 173 ~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~dws~~~~g~g~i~p~~~~ls~~~G~v~~w~i 244 (624)
T PF03169_consen 173 FIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWSFSFDWSPILIGSGLIVPLWAQLSMFLGAVLAWGI 244 (624)
T ss_pred HHHHHHHHHHHhhhcccccceeeccccchHhhhcccceeeEeecHHhcCCCeeccHHHHHHHHHHHHHHHHh
Confidence 77777432 2220 00 00 01 124557888888988889999999999854
No 9
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=44.28 E-value=3.2e+02 Score=28.99 Aligned_cols=99 Identities=10% Similarity=-0.018 Sum_probs=50.3
Q ss_pred HHHHhhhccccCCchHHHHHHHHHHHHHHHhhhhhhhhcccc---ccccchhHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 010082 244 AISTATIPTIFPPLKWYLVLCSYLIAPALAFCNSYGTGLTDW---NLASTYGKIGLFIIASLVGTDGGVIAGLAACGVMM 320 (518)
Q Consensus 244 ~~~~~~~~~~~~~~p~w~~ilai~l~~i~~~~~~~~~g~tg~---~p~~~l~~i~~li~g~~~g~pg~~~anl~~~~~~~ 320 (518)
..++......-.+-.||..+++.+++..+....+++..+... +|..++..++|-..|-.. |....-+++-.+-.
T Consensus 18 GaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~---G~ii~~lY~~~~~~ 94 (397)
T TIGR00814 18 GAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNW---GILITLLYFFAIYP 94 (397)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHH---HHHHHHHHHHHHHH
Confidence 444444433223456888888888888877777775555432 234445555666666442 44444444444333
Q ss_pred HHHHHHH---HHhhhhhhhh-ccCCChHH
Q 010082 321 SIVSTAA---DLMQDFKTGY-LTLSSAKS 345 (518)
Q Consensus 321 ~~~~qa~---~~~~DlK~G~-yl~~pPR~ 345 (518)
.....+. +..+|+=.-+ ....|||.
T Consensus 95 i~~aY~~~~~~~~~~fl~~~~~~~~p~~~ 123 (397)
T TIGR00814 95 ILLIYSVAITNDSASFLVNQLGTAPPLRG 123 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3233332 2323332222 35677774
No 10
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=38.57 E-value=1.2e+02 Score=30.90 Aligned_cols=28 Identities=7% Similarity=0.034 Sum_probs=23.0
Q ss_pred cCCChHHHHHHHHHHHHHHHhHHHHHHH
Q 010082 339 TLSSAKSMFVSQLLGTAMGCVIAPLTFW 366 (518)
Q Consensus 339 l~~pPR~~f~~Q~iG~ivga~v~~~v~~ 366 (518)
.+.+||+-..+.+++++.+.+|.++.++
T Consensus 270 ~~~~~~~~~~~~i~~~l~al~Vg~g~y~ 297 (298)
T PF11449_consen 270 FAMNPKAAENATIYSTLPALIVGYGLYF 297 (298)
T ss_pred HhhCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 3477899999999999999888887754
No 11
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=38.36 E-value=29 Score=25.49 Aligned_cols=23 Identities=13% Similarity=0.465 Sum_probs=14.9
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhc
Q 010082 228 DGIPTWFAASGYVGLAAISTATIP 251 (518)
Q Consensus 228 ~~vP~ww~~~~lvv~~~~~~~~~~ 251 (518)
+.+|.||... +.++++++++-..
T Consensus 18 nplP~ww~~~-f~~tivfa~~Y~~ 40 (51)
T PF14715_consen 18 NPLPRWWLWL-FYGTIVFAVGYLV 40 (51)
T ss_pred CCCCHHHHHH-HHHHHHHHHHHHH
Confidence 5789998754 4556666665443
No 12
>PLN00182 putative aquaporin NIP4; Provisional
Probab=34.65 E-value=5e+02 Score=26.23 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=9.2
Q ss_pred ChHHHHHHHHHHHHHH
Q 010082 342 SAKSMFVSQLLGTAMG 357 (518)
Q Consensus 342 pPR~~f~~Q~iG~ivg 357 (518)
+..+.|.+|+++|.+=
T Consensus 157 s~~~a~~~E~l~TfiL 172 (283)
T PLN00182 157 SSGQALVAEIIISFLL 172 (283)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3445566666666653
No 13
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=28.99 E-value=1.9e+02 Score=29.63 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=63.3
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHh--HHHHHHHHHhhcCCCCCCCC--CCCCchhHHHHHHHhhhcccCCCCchhhHH
Q 010082 334 KTGYLTLSSAKSMFVSQLLGTAMGCV--IAPLTFWMYWTAFDIGSPDG--PYKAPYAVIFREMAILGIEGFSELPKHCLA 409 (518)
Q Consensus 334 K~G~yl~~pPR~~f~~Q~iG~ivga~--v~~~v~~~l~~~~~i~~~~~--~~~~P~a~~~~~~a~~g~~G~~~lp~~~~~ 409 (518)
..|..+|+++= .+++++ -|.++|..+.++|+-.++.. ...+=...=+..+-.+|..|..+.|+..+.
T Consensus 102 ~~g~f~GlS~L---------Aiiaa~~~~NggLY~aL~~~yGd~~D~gA~~i~sl~~GPf~tMl~LG~sG~a~ip~~~lv 172 (314)
T PF03812_consen 102 QSGFFLGLSAL---------AIIAAMTNSNGGLYLALMGQYGDEEDVGAFSILSLNDGPFFTMLALGASGLANIPWMSLV 172 (314)
T ss_pred ccccccchHHH---------HHHHHHhcCCHHHHHHHHHHhCCHHHhHHHHHHHhhhhHHHHHHHHhhccccCCCHHHHH
Confidence 45667777765 233333 45777877877775321110 111111122233334455677788987665
Q ss_pred HHHHHHHHHHHHHHHHhhcc----cccccccccchhcccccccch---------hhH---HHHHHHHHHHHHHHHhCc
Q 010082 410 LCCGFFVAALVINLLRDATP----TKISRFIPVPMAMAVPFYIGA---------YFA---IDMFVGTVILFIWELVNR 471 (518)
Q Consensus 410 ~~~~g~~lg~~l~~~~~~~p----~~~~~~~p~~~~~~~g~~~p~---------~~~---~~~~vG~~~~~~~~r~~~ 471 (518)
-.++-+++|+++.=+.+-++ +.-...+| -+.+.+|.-+.. ..- ...++.+...++.+|+..
T Consensus 173 ~~llP~iiG~iLGNLD~~~r~fl~~~~~~lIP-F~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~i~ 249 (314)
T PF03812_consen 173 AALLPIIIGMILGNLDPDFRKFLAPGVPILIP-FFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRLIL 249 (314)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHhcCCCeeee-hhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHHc
Confidence 55555555655554433222 11112244 345555554431 111 124455566777777643
No 14
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=27.88 E-value=6.4e+02 Score=25.38 Aligned_cols=44 Identities=9% Similarity=0.182 Sum_probs=33.4
Q ss_pred HHHHhhhhhhhhccCCChHHHHHHHHHHH----HHHHhHHHHHHHHHh
Q 010082 326 AADLMQDFKTGYLTLSSAKSMFVSQLLGT----AMGCVIAPLTFWMYW 369 (518)
Q Consensus 326 a~~~~~DlK~G~yl~~pPR~~f~~Q~iG~----ivga~v~~~v~~~l~ 369 (518)
-.+.++-.=+|.-+++||=..+.+.+.|. ++|.++.+++...+.
T Consensus 286 ~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~~~~~ 333 (341)
T TIGR02872 286 LRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIVVLFK 333 (341)
T ss_pred HHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777799999999999999998875 447777776655443
No 15
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.31 E-value=1.5e+02 Score=25.47 Aligned_cols=41 Identities=17% Similarity=0.016 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHHHhhhh
Q 010082 235 AASGYVGLAAISTATIPTIFPPLKWYLVLCSYLIAPALAFCNS 277 (518)
Q Consensus 235 ~~~~lvv~~~~~~~~~~~~~~~~p~w~~ilai~l~~i~~~~~~ 277 (518)
++++.+|...++.++=+ +.+...|+.|+-+++++...+-+.
T Consensus 52 fIsGilVGa~iG~llD~--~agTsPwglIv~lllGf~AG~lnv 92 (116)
T COG5336 52 FISGILVGAGIGWLLDK--FAGTSPWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred HHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHHHHHH
Confidence 56676766666666554 336777888888888887665443
No 16
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=26.60 E-value=8.4e+02 Score=26.36 Aligned_cols=58 Identities=7% Similarity=-0.110 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHHHhhhhhhhhccccccc
Q 010082 230 IPTWFAASGYVGLAAISTATIPTIFPPLKWYLVLCSYLIAPALAFCNSYGTGLTDWNLA 288 (518)
Q Consensus 230 vP~ww~~~~lvv~~~~~~~~~~~~~~~~p~w~~ilai~l~~i~~~~~~~~~g~tg~~p~ 288 (518)
.++++|+...++.+++-+........+..|+.. -...+.++.++..+.+..+++.++.
T Consensus 251 ~~~~~~~~~~~l~~~~li~g~~~~~~~~~~~~~-~~~~~fl~~~ii~~~i~~~~~~~~~ 308 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIYGFSFVIIKIKWYFP-EIAALFLIIGIIIGLIRHRSGKSPN 308 (465)
T ss_pred cccceeehHHHHHHHHHHhchhhhhccccccHH-HHHHHHHHHHHHHHHHHhhccCCHh
Confidence 456677777666554444320000112334333 2334455555666666666777764
No 17
>COG1297 Predicted membrane protein [Function unknown]
Probab=26.14 E-value=6.8e+02 Score=28.05 Aligned_cols=126 Identities=14% Similarity=0.081 Sum_probs=66.8
Q ss_pred hhhhhhccCCChHHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHhhhcccCCCCchhhHHHH
Q 010082 332 DFKTGYLTLSSAKSMFVSQLLGTAMGCVIAPLTFWMYWTAFDIGSPDGPYKAPYAVIFREMAILGIEGFSELPKHCLALC 411 (518)
Q Consensus 332 DlK~G~yl~~pPR~~f~~Q~iG~ivga~v~~~v~~~l~~~~~i~~~~~~~~~P~a~~~~~~a~~g~~G~~~lp~~~~~~~ 411 (518)
=++.||+-+-|=|.++..=..|.++|.+..++.+..+.- ++++|-|...+=..+=+.+... ++-+.+....
T Consensus 94 l~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv-------~skLPyPeGvAaAEvL~~g~~~-~gd~~g~~~i- 164 (624)
T COG1297 94 LLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIV-------ESKLPYPEGVAAAEVLKAGNQR-EGDASGIKLI- 164 (624)
T ss_pred HHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeec-------cCCCCCCCchhHHHHHHhcCCC-CCCcccchhh-
Confidence 467888889999999999999999999888877443321 2345555444321221112211 1111222222
Q ss_pred HHHHHHHHHHHHHH---hhcccc------ccc---cc---ccchhcccccccchhhHHHHHHHHHHHHHH
Q 010082 412 CGFFVAALVINLLR---DATPTK------ISR---FI---PVPMAMAVPFYIGAYFAIDMFVGTVILFIW 466 (518)
Q Consensus 412 ~~g~~lg~~l~~~~---~~~p~~------~~~---~~---p~~~~~~~g~~~p~~~~~~~~vG~~~~~~~ 466 (518)
-.++.++.+..+.. |..+.. ..| .+ -++...+.|-++....-..+++|.++.|-+
T Consensus 165 ~~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~lg~~~S~AliG~GylvGl~~~iaml~G~~iaWgv 234 (624)
T COG1297 165 ALGGALAALYSLLASGLRVIASSLSAAFSVGRAAFALGLGLSLALIGAGYLVGLPAGIAMLIGIFIAWGV 234 (624)
T ss_pred hhhhHHHHHHHHHhccceeehhhHHHHHHhcchhhhhcccccHHHhCceEEecchHHHHHHHHHHHHHHH
Confidence 22344444444442 122211 000 01 124455556555556667888998888775
No 18
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=25.51 E-value=2.2e+02 Score=24.48 Aligned_cols=36 Identities=3% Similarity=-0.008 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHhhhcc-ccCCchHHHHHHHH
Q 010082 231 PTWFAASGYVGLAAISTATIPT-IFPPLKWYLVLCSY 266 (518)
Q Consensus 231 P~ww~~~~lvv~~~~~~~~~~~-~~~~~p~w~~ilai 266 (518)
..+-|+.|+++|.++.++.... ....+|-...+..+
T Consensus 24 ~~k~yviGFiLSiiLT~I~F~~V~~~~l~~~~~~~~I 60 (110)
T TIGR02908 24 EMKKQIVTFALMIFLTLIAFFAVMLDEIDKWFVIPFI 60 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHH
Confidence 4456889999888877653321 12245555444433
No 19
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=24.00 E-value=1.1e+03 Score=26.76 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=21.5
Q ss_pred chhcccccccchhhHHHHHHHHHHHHHH
Q 010082 439 PMAMAVPFYIGAYFAIDMFVGTVILFIW 466 (518)
Q Consensus 439 ~~~~~~g~~~p~~~~~~~~vG~~~~~~~ 466 (518)
+..++.|...|......+++|+++.|++
T Consensus 231 ~~~~g~gli~p~~~~~~~~~G~vl~~~i 258 (654)
T TIGR00728 231 SAYIGSGLITPFTVGLNMLLGVILAFGI 258 (654)
T ss_pred HhhcCCCccCCHHHHHHHHHHHHHHHHH
Confidence 3455677777888888899999888754
No 20
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=23.00 E-value=2.1e+02 Score=25.49 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=29.8
Q ss_pred CchHHHHHHHHHHHHHHHhhhhhhhhccccccccchhHHHHHHHHHhc
Q 010082 256 PLKWYLVLCSYLIAPALAFCNSYGTGLTDWNLASTYGKIGLFIIASLV 303 (518)
Q Consensus 256 ~~p~w~~ilai~l~~i~~~~~~~~~g~tg~~p~~~l~~i~~li~g~~~ 303 (518)
+.|||..+ .=+++.++...........|......+....|++.+.++
T Consensus 62 ~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~i 108 (138)
T PF04657_consen 62 SVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLI 108 (138)
T ss_pred cCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 67888876 335555555555555555555444445567888888776
No 21
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.46 E-value=3.4e+02 Score=24.76 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhhcccc----CCchHHHHHHHHHHHHHHHhhhhhhhhccccccccchhHHHHHHHHHhc
Q 010082 235 AASGYVGLAAISTATIPTIF----PPLKWYLVLCSYLIAPALAFCNSYGTGLTDWNLASTYGKIGLFIIASLV 303 (518)
Q Consensus 235 ~~~~lvv~~~~~~~~~~~~~----~~~p~w~~ilai~l~~i~~~~~~~~~g~tg~~p~~~l~~i~~li~g~~~ 303 (518)
+..+.++..++.++.-.... .+.|||..+-. +++.++.+-+....-.-|..-...+-+..|++.|.+.
T Consensus 42 f~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG-~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glli 113 (150)
T COG3238 42 FLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGG-LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLI 113 (150)
T ss_pred HHHHHHHHHHHHHHhcCCCchhhccCCchHHHHcc-chhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 45555544444444221111 25699999887 6677666655555555444332234467888888776
No 22
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=20.61 E-value=6.2e+02 Score=22.68 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010082 119 IVNCSVLLGAIISWGFLWPFI 139 (518)
Q Consensus 119 ~~~~~~~~G~vl~~~il~P~~ 139 (518)
++....|.+..+...+..+++
T Consensus 2 k~ea~lF~~l~~Ff~~~~~vY 22 (137)
T PF12270_consen 2 KVEAKLFYGLAVFFLVVAVVY 22 (137)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666444
Done!