Query 010082
Match_columns 518
No_of_seqs 140 out of 1130
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 19:30:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3llq_A Aquaporin Z 2; aquapori 23.5 4.7E+02 0.016 24.6 14.0 16 342-357 156-171 (256)
2 3h3g_B Parathyroid hormone-rel 19.9 81 0.0028 18.5 2.4 18 329-355 3-20 (24)
3 2jwa_A Receptor tyrosine-prote 10.4 2.5E+02 0.0084 19.1 3.2 19 454-472 23-41 (44)
4 2knc_A Integrin alpha-IIB; tra 10.2 2.5E+02 0.0087 19.9 3.3 8 229-236 9-16 (54)
5 2k1a_A Integrin alpha-IIB; sin 9.3 3.1E+02 0.011 18.3 3.3 10 228-237 6-15 (42)
6 2l2t_A Receptor tyrosine-prote 8.5 2.5E+02 0.0086 19.0 2.6 15 458-472 26-40 (44)
7 2ks1_B Epidermal growth factor 7.5 2.9E+02 0.0099 18.7 2.6 16 457-472 26-41 (44)
8 4b19_A PEPA1; toxin, toxin apo 5.9 4.9E+02 0.017 16.1 2.8 17 454-471 13-29 (30)
9 2jln_A MHP1; hydantoin, transp 5.9 7.7E+02 0.026 25.2 6.3 18 256-273 55-72 (501)
10 2j01_J 50S ribosomal protein L 5.9 3E+02 0.01 24.0 2.6 29 334-362 121-149 (173)
No 1
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=23.46 E-value=4.7e+02 Score=24.58 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=10.9
Q ss_pred ChHHHHHHHHHHHHHH
Q 010082 342 SAKSMFVSQLLGTAMG 357 (518)
Q Consensus 342 pPR~~f~~Q~iG~ivg 357 (518)
++...|..|+++|.+=
T Consensus 156 s~~~~f~~E~i~Tf~L 171 (256)
T 3llq_A 156 SLVSALLIEIILTAFF 171 (256)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4556777787777663
No 2
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=19.94 E-value=81 Score=18.51 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=14.3
Q ss_pred HhhhhhhhhccCCChHHHHHHHHHHHH
Q 010082 329 LMQDFKTGYLTLSSAKSMFVSQLLGTA 355 (518)
Q Consensus 329 ~~~DlK~G~yl~~pPR~~f~~Q~iG~i 355 (518)
-+||+| |.+|.-++++.+
T Consensus 3 s~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 3 SIQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp CHHHHH---------HHHHHHHHHHHH
T ss_pred cHHHHH---------HHHHHHHHHHHh
Confidence 368999 999988887754
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=10.40 E-value=2.5e+02 Score=19.06 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhCcC
Q 010082 454 IDMFVGTVILFIWELVNRK 472 (518)
Q Consensus 454 ~~~~vG~~~~~~~~r~~~~ 472 (518)
..++++..+..|+|||+.+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 3456666677778887654
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.18 E-value=2.5e+02 Score=19.87 Aligned_cols=8 Identities=38% Similarity=1.174 Sum_probs=4.4
Q ss_pred CCchHHHH
Q 010082 229 GIPTWFAA 236 (518)
Q Consensus 229 ~vP~ww~~ 236 (518)
++|.|.++
T Consensus 9 ~vp~wiIi 16 (54)
T 2knc_A 9 AIPIWWVL 16 (54)
T ss_dssp TCCHHHHH
T ss_pred CcchHHHH
Confidence 46666543
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=9.25 E-value=3.1e+02 Score=18.32 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=5.6
Q ss_pred CCCchHHHHH
Q 010082 228 DGIPTWFAAS 237 (518)
Q Consensus 228 ~~vP~ww~~~ 237 (518)
.++|.|.++.
T Consensus 6 ~~vp~wiIi~ 15 (42)
T 2k1a_A 6 RAIPIWWVLV 15 (42)
T ss_dssp CCCCHHHHHH
T ss_pred CCcchHHHHH
Confidence 3567665543
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.49 E-value=2.5e+02 Score=19.00 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhCcC
Q 010082 458 VGTVILFIWELVNRK 472 (518)
Q Consensus 458 vG~~~~~~~~r~~~~ 472 (518)
+++.+.+|+|||+.+
T Consensus 26 i~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 26 VGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhhhhhhh
Confidence 334455667766544
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.48 E-value=2.9e+02 Score=18.65 Aligned_cols=16 Identities=13% Similarity=-0.116 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhCcC
Q 010082 457 FVGTVILFIWELVNRK 472 (518)
Q Consensus 457 ~vG~~~~~~~~r~~~~ 472 (518)
++++.+.+|+|||+.+
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 3344555667776543
No 8
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=5.94 E-value=4.9e+02 Score=16.07 Aligned_cols=17 Identities=6% Similarity=0.001 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhCc
Q 010082 454 IDMFVGTVILFIWELVNR 471 (518)
Q Consensus 454 ~~~~vG~~~~~~~~r~~~ 471 (518)
+++++. +|.+|+++|..
T Consensus 13 sGciva-lF~hWL~~r~~ 29 (30)
T 4b19_A 13 SGCAIA-FFSYWLSRRNT 29 (30)
T ss_dssp HHHHHH-HHHHHHHHHSC
T ss_pred HHHHHH-HHHHHHHhccC
Confidence 345555 56677777654
No 9
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=5.89 E-value=7.7e+02 Score=25.22 Aligned_cols=18 Identities=11% Similarity=0.216 Sum_probs=12.5
Q ss_pred CchHHHHHHHHHHHHHHH
Q 010082 256 PLKWYLVLCSYLIAPALA 273 (518)
Q Consensus 256 ~~p~w~~ilai~l~~i~~ 273 (518)
++.+|-.+++++++-++.
T Consensus 55 GLs~~~a~lai~lG~li~ 72 (501)
T 2jln_A 55 SFQVWQVIVAIAAGCTIA 72 (501)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 677877777777765443
No 10
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=5.85 E-value=3e+02 Score=24.04 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=22.8
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHhHHH
Q 010082 334 KTGYLTLSSAKSMFVSQLLGTAMGCVIAP 362 (518)
Q Consensus 334 K~G~yl~~pPR~~f~~Q~iG~ivga~v~~ 362 (518)
.+-.+.+.|.|.+.++|++|++-+..-+.
T Consensus 121 ~v~~la~LPs~eel~a~l~g~l~ap~~~~ 149 (173)
T 2j01_J 121 DVEALAELPTMDELRAELVGVLQAPMAEL 149 (173)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999986665443
Done!