Query 010082
Match_columns 518
No_of_seqs 140 out of 1130
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 19:30:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010082.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010082hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 5.9 1.9E+02 0.014 16.4 2.3 15 483-497 2-16 (34)
2 d1zava1 d.58.62.1 (A:1-177) Ri 5.7 2E+02 0.014 23.1 3.5 29 335-363 128-156 (177)
3 d2axtj1 f.23.32.1 (J:7-40) Pho 3.9 4.1E+02 0.03 15.2 3.8 25 351-375 6-31 (34)
4 d2e74d2 f.23.12.1 (D:12-45) IS 3.6 4.2E+02 0.03 15.0 2.8 17 413-429 17-33 (34)
5 d1tiaa_ c.69.1.17 (A:) Triacyl 2.8 4.4E+02 0.032 22.4 3.5 38 480-517 139-177 (271)
6 d1zcea1 b.122.1.8 (A:2-147) Hy 2.6 2.3E+02 0.017 22.3 1.0 16 324-339 34-49 (146)
7 d2evea1 b.122.1.8 (A:2-149) Hy 2.3 2.7E+02 0.02 21.9 1.2 15 324-338 31-45 (148)
8 d1h2sa_ f.13.1.1 (A:) Sensory 2.3 4.7E+02 0.035 21.5 3.0 27 454-480 13-39 (225)
9 d2gbsa1 b.122.1.8 (A:2-137) Hy 2.2 2.9E+02 0.021 21.4 1.2 16 324-339 33-48 (136)
10 d1xioa_ f.13.1.1 (A:) Sensory 1.9 7.7E+02 0.056 19.9 3.7 37 452-490 11-47 (226)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.94 E-value=1.9e+02 Score=16.39 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=10.7
Q ss_pred hhhhhhhHhhHHHHH
Q 010082 483 SGLICGDGIWTIPSA 497 (518)
Q Consensus 483 agL~aG~ai~gviia 497 (518)
+++++|.++.-+-+.
T Consensus 2 a~fiagta~tmig~t 16 (34)
T d1q90m_ 2 AEFIAGTALTMVGMT 16 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHHH
Confidence 578888887766554
No 2
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=5.67 E-value=2e+02 Score=23.13 Aligned_cols=29 Identities=10% Similarity=0.136 Sum_probs=23.7
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHhHHHH
Q 010082 335 TGYLTLSSAKSMFVSQLLGTAMGCVIAPL 363 (518)
Q Consensus 335 ~G~yl~~pPR~~f~~Q~iG~ivga~v~~~ 363 (518)
+-.+.+.|.|...++|++|.+-+..-+..
T Consensus 128 i~~la~LPs~eel~a~l~~~L~ap~~~l~ 156 (177)
T d1zava1 128 VENIAKLPSKEELYAMLVGRVKAPITGLV 156 (177)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhHHHHHH
Confidence 44678999999999999999987765543
No 3
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.87 E-value=4.1e+02 Score=15.24 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=16.4
Q ss_pred HHHHHHHHhHHHHHHHHHhhcC-CCC
Q 010082 351 LLGTAMGCVIAPLTFWMYWTAF-DIG 375 (518)
Q Consensus 351 ~iG~ivga~v~~~v~~~l~~~~-~i~ 375 (518)
++|++.|..|...+=..+...| +++
T Consensus 6 lv~tv~G~~vi~~vG~FfYGsYsGlG 31 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFFYGAYAGLG 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred EeeehhhhhhHhheeeeeeeeecccc
Confidence 6788888877776644555555 554
No 4
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.63 E-value=4.2e+02 Score=14.99 Aligned_cols=17 Identities=12% Similarity=0.053 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhcc
Q 010082 413 GFFVAALVINLLRDATP 429 (518)
Q Consensus 413 ~g~~lg~~l~~~~~~~p 429 (518)
.|-.+|++-|+++++.|
T Consensus 17 tg~alg~lypvvkyfip 33 (34)
T d2e74d2 17 TGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhhhhHHhhcCC
Confidence 35677888888887654
No 5
>d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]}
Probab=2.76 E-value=4.4e+02 Score=22.37 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=24.9
Q ss_pred hcchhhhhhhHhhHHHHHHHHhcCCCCCcceeec-cCCC
Q 010082 480 AVASGLICGDGIWTIPSAILSIFRVNPPVCMYFG-PAVG 517 (518)
Q Consensus 480 ~laagL~aG~ai~gviia~~~~~gv~~~~~~~~~-~~~~ 517 (518)
++-.|=.-|.|++.+...-+.-.+.....|+-|+ ||++
T Consensus 139 i~iTGHSLGGAlA~L~a~~l~~~~~~~~~~~tfG~PrvG 177 (271)
T d1tiaa_ 139 LVVVGHSLGAAVATLAATDLRGKGYPSAKLYAYASPRVG 177 (271)
T ss_pred EEEeccchHHHHHHHHHHHHHHcCCCcceEEEeCCCCcC
Confidence 3445666677777775555555555556899997 5655
No 6
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.59 E-value=2.3e+02 Score=22.30 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.8
Q ss_pred HHHHHHhhhhhhhhcc
Q 010082 324 STAADLMQDFKTGYLT 339 (518)
Q Consensus 324 ~qa~~~~~DlK~G~yl 339 (518)
.||-+++.|+|.|.+.
T Consensus 34 yqArn~lr~Mk~GD~~ 49 (146)
T d1zcea1 34 YQARNNMRAMKIGDKG 49 (146)
T ss_dssp HHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHhccCCCEE
Confidence 5899999999999864
No 7
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=2.32 E-value=2.7e+02 Score=21.90 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=12.4
Q ss_pred HHHHHHhhhhhhhhc
Q 010082 324 STAADLMQDFKTGYL 338 (518)
Q Consensus 324 ~qa~~~~~DlK~G~y 338 (518)
.||.+++.|+|.|-.
T Consensus 31 yqArn~lr~M~~GD~ 45 (148)
T d2evea1 31 YQARNFLRTMAEGDE 45 (148)
T ss_dssp HHHHHHHHHCCTTCE
T ss_pred HHHHHHHHhcccCCE
Confidence 588899999998864
No 8
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=2.31 E-value=4.7e+02 Score=21.47 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhCcCcccchhhh
Q 010082 454 IDMFVGTVILFIWELVNRKDSEDYAGA 480 (518)
Q Consensus 454 ~~~~vG~~~~~~~~r~~~~~~~ky~y~ 480 (518)
..|..+.++..+.+|+.+..++++.++
T Consensus 13 ~~m~~~tv~F~~~~~~~~~~~r~~~~~ 39 (225)
T d1h2sa_ 13 IGMLVGTLAFAWAGRDAGSGERRYYVT 39 (225)
T ss_dssp HHHHHHHHHHHHHTTTCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccchhhHH
Confidence 346666666566666665555565544
No 9
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=2.21 E-value=2.9e+02 Score=21.36 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=12.9
Q ss_pred HHHHHHhhhhhhhhcc
Q 010082 324 STAADLMQDFKTGYLT 339 (518)
Q Consensus 324 ~qa~~~~~DlK~G~yl 339 (518)
.||-+++.|+|.|-..
T Consensus 33 yqArn~mr~M~~GD~~ 48 (136)
T d2gbsa1 33 HSAKLHMVAMRRGDRA 48 (136)
T ss_dssp HHHHHHHHHCCTTCEE
T ss_pred HHHHHHHHHhccCCEE
Confidence 5888999999988653
No 10
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=1.85 E-value=7.7e+02 Score=19.88 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhCcCcccchhhhcchhhhhhhH
Q 010082 452 FAIDMFVGTVILFIWELVNRKDSEDYAGAVASGLICGDG 490 (518)
Q Consensus 452 ~~~~~~vG~~~~~~~~r~~~~~~~ky~y~laagL~aG~a 490 (518)
.+..|.++.++.+..+++.+..++++.++ ++++++.+
T Consensus 11 ~~~~m~~~~~~f~~~~~~~~~~~r~~~~~--~~~I~~iA 47 (226)
T d1xioa_ 11 YVAGMTIGALHFWSLSRNPRGVPQYEYLV--AMFIPIWS 47 (226)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCCHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCccchhhHHH--HHHHHHHH
Done!