Query 010085
Match_columns 518
No_of_seqs 265 out of 724
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 19:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 1E-41 3.5E-46 296.8 9.5 96 179-275 9-104 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 8.2E-41 2.8E-45 294.6 9.4 96 179-276 11-108 (111)
3 2yus_A SWI/SNF-related matrix- 99.7 3.1E-16 1.1E-20 130.3 9.6 56 402-457 17-72 (79)
4 2elk_A SPCC24B10.08C protein; 99.4 3E-13 1E-17 105.8 6.9 49 402-450 8-58 (58)
5 1x41_A Transcriptional adaptor 99.3 2.7E-12 9.1E-17 100.8 7.2 51 401-451 6-57 (60)
6 1guu_A C-MYB, MYB proto-oncoge 99.1 1.7E-10 5.7E-15 87.6 5.5 45 403-447 3-48 (52)
7 2cqr_A RSGI RUH-043, DNAJ homo 99.0 1.4E-10 4.7E-15 95.1 5.2 51 401-452 16-70 (73)
8 1gvd_A MYB proto-oncogene prot 99.0 2.4E-10 8.3E-15 86.8 5.9 45 403-447 3-48 (52)
9 2yum_A ZZZ3 protein, zinc fing 99.0 2E-10 7E-15 93.5 5.2 47 401-447 6-58 (75)
10 1wgx_A KIAA1903 protein; MYB D 99.0 3.9E-10 1.3E-14 92.5 6.8 48 402-449 7-58 (73)
11 2d9a_A B-MYB, MYB-related prot 99.0 6.2E-10 2.1E-14 86.9 7.2 47 401-447 6-53 (60)
12 2cu7_A KIAA1915 protein; nucle 99.0 5.8E-10 2E-14 90.4 6.5 47 401-447 7-53 (72)
13 1w0t_A Telomeric repeat bindin 99.0 5.9E-10 2E-14 85.2 6.0 44 404-447 3-49 (53)
14 2dim_A Cell division cycle 5-l 98.9 1.4E-09 4.8E-14 87.5 7.3 46 402-447 8-54 (70)
15 3sjm_A Telomeric repeat-bindin 98.9 2E-09 6.8E-14 85.9 6.0 45 403-447 11-58 (64)
16 1ity_A TRF1; helix-turn-helix, 98.9 2.6E-09 9.1E-14 85.7 6.0 46 402-447 9-57 (69)
17 2din_A Cell division cycle 5-l 98.8 5.4E-09 1.8E-13 83.2 6.3 45 402-447 8-52 (66)
18 2eqr_A N-COR1, N-COR, nuclear 98.8 8.9E-09 3E-13 81.1 6.5 44 403-446 12-55 (61)
19 2cjj_A Radialis; plant develop 98.7 6.9E-09 2.4E-13 88.7 5.3 45 403-447 8-56 (93)
20 2ltp_A Nuclear receptor corepr 98.2 1.4E-09 4.8E-14 91.9 0.0 47 401-447 14-60 (89)
21 2llk_A Cyclin-D-binding MYB-li 98.7 3.4E-08 1.2E-12 80.9 7.0 46 401-447 21-66 (73)
22 1gv2_A C-MYB, MYB proto-oncoge 98.6 2.9E-08 9.8E-13 85.2 6.1 45 403-447 4-49 (105)
23 2k9n_A MYB24; R2R3 domain, DNA 98.6 3.6E-08 1.2E-12 85.2 6.5 44 404-447 2-46 (107)
24 2iw5_B Protein corest, REST co 98.6 5E-08 1.7E-12 95.2 6.5 46 402-447 132-177 (235)
25 2k9n_A MYB24; R2R3 domain, DNA 98.6 6.4E-08 2.2E-12 83.7 6.6 46 402-447 52-97 (107)
26 1h8a_C AMV V-MYB, MYB transfor 98.6 8.5E-08 2.9E-12 85.2 7.3 46 402-447 26-72 (128)
27 3osg_A MYB21; transcription-DN 98.6 6.2E-08 2.1E-12 86.2 6.0 46 402-447 10-55 (126)
28 2ckx_A NGTRF1, telomere bindin 98.6 6.9E-08 2.3E-12 80.9 5.8 44 404-447 1-49 (83)
29 1gv2_A C-MYB, MYB proto-oncoge 98.6 6E-08 2E-12 83.2 5.5 46 402-447 55-100 (105)
30 3osg_A MYB21; transcription-DN 98.5 7E-08 2.4E-12 85.8 5.4 46 402-447 61-106 (126)
31 2yqk_A Arginine-glutamic acid 98.5 2.6E-07 9E-12 73.3 7.0 45 401-445 7-52 (63)
32 1h8a_C AMV V-MYB, MYB transfor 98.5 1.7E-07 5.7E-12 83.3 6.2 46 402-447 78-123 (128)
33 3zqc_A MYB3; transcription-DNA 98.4 7.1E-08 2.4E-12 86.2 3.2 44 404-447 3-47 (131)
34 3zqc_A MYB3; transcription-DNA 98.4 1.9E-07 6.5E-12 83.4 6.0 46 402-447 53-98 (131)
35 2z3y_A Lysine-specific histone 98.4 1.4E-07 4.6E-12 103.9 5.3 87 186-275 8-98 (662)
36 4gut_A Lysine-specific histone 98.4 2.9E-07 1E-11 103.7 8.1 92 177-274 213-322 (776)
37 2cqq_A RSGI RUH-037, DNAJ homo 98.4 4E-07 1.4E-11 74.3 5.9 48 403-452 8-59 (72)
38 2xag_B REST corepressor 1; ami 98.4 3.6E-07 1.2E-11 97.8 6.8 46 402-447 379-424 (482)
39 2roh_A RTBP1, telomere binding 98.3 9E-07 3.1E-11 79.1 6.1 45 403-447 31-80 (122)
40 1h89_C C-MYB, MYB proto-oncoge 98.3 1.1E-06 3.7E-11 80.7 6.7 46 402-447 57-103 (159)
41 1h89_C C-MYB, MYB proto-oncoge 98.2 1.1E-06 3.6E-11 80.8 6.2 46 402-447 109-154 (159)
42 2crg_A Metastasis associated p 98.2 1.3E-06 4.4E-11 70.8 5.8 45 403-447 8-53 (70)
43 2aje_A Telomere repeat-binding 98.2 8.1E-07 2.8E-11 77.5 4.5 46 402-447 12-62 (105)
44 2e5r_A Dystrobrevin alpha; ZZ 98.2 1.9E-06 6.5E-11 68.6 5.2 48 346-393 12-61 (63)
45 2juh_A Telomere binding protei 98.2 1.4E-06 4.8E-11 77.8 4.7 46 402-447 16-66 (121)
46 4a69_C Nuclear receptor corepr 98.1 3E-06 1E-10 72.4 5.8 43 404-446 44-86 (94)
47 4eef_G F-HB80.4, designed hema 98.0 4.6E-07 1.6E-11 74.2 -1.1 43 403-445 20-66 (74)
48 1x58_A Hypothetical protein 49 97.9 1.2E-05 4.3E-10 63.8 4.9 46 402-447 7-55 (62)
49 2dip_A Zinc finger SWIM domain 97.9 3.9E-06 1.3E-10 72.4 2.0 45 346-394 32-77 (98)
50 2fc7_A ZZZ3 protein; structure 97.8 1.6E-05 5.5E-10 66.4 5.2 52 345-396 21-77 (82)
51 2xag_A Lysine-specific histone 97.6 6.8E-05 2.3E-09 85.5 6.6 87 186-275 179-269 (852)
52 1ign_A Protein (RAP1); RAP1,ye 97.5 6.7E-05 2.3E-09 73.9 4.2 46 402-447 7-58 (246)
53 1tot_A CREB-binding protein; z 97.2 8.8E-05 3E-09 56.8 1.4 43 346-394 7-49 (52)
54 2ebi_A DNA binding protein GT- 96.6 0.0011 3.8E-08 54.8 3.3 46 404-449 5-64 (86)
55 3hm5_A DNA methyltransferase 1 96.3 0.0053 1.8E-07 52.4 5.7 44 404-447 31-79 (93)
56 1ug2_A 2610100B20RIK gene prod 96.0 0.0084 2.9E-07 51.0 5.5 44 404-447 34-80 (95)
57 1fex_A TRF2-interacting telome 95.8 0.0076 2.6E-07 47.1 3.8 43 404-446 3-55 (59)
58 1ofc_X ISWI protein; nuclear p 95.6 0.009 3.1E-07 60.8 4.7 40 404-443 111-151 (304)
59 2xag_B REST corepressor 1; ami 95.5 0.0023 7.9E-08 68.7 0.0 44 404-447 190-233 (482)
60 2aqe_A Transcriptional adaptor 95.3 0.028 9.6E-07 47.4 6.1 70 191-269 19-88 (90)
61 2cuj_A Transcriptional adaptor 95.2 0.033 1.1E-06 48.7 6.2 70 191-269 37-106 (108)
62 2elj_A Transcriptional adapter 94.7 0.048 1.6E-06 45.8 5.9 70 191-268 19-88 (88)
63 2lr8_A CAsp8-associated protei 93.1 0.0091 3.1E-07 48.3 0.0 43 404-447 15-60 (70)
64 4iej_A DNA methyltransferase 1 93.7 0.11 3.6E-06 44.4 5.8 45 403-447 30-79 (93)
65 2xb0_X Chromo domain-containin 93.3 0.074 2.5E-06 53.3 5.0 32 401-432 166-198 (270)
66 4b4c_A Chromodomain-helicase-D 92.8 0.087 3E-06 49.7 4.5 30 403-432 134-164 (211)
67 4b4c_A Chromodomain-helicase-D 89.7 0.36 1.2E-05 45.5 5.3 39 404-442 8-51 (211)
68 1irz_A ARR10-B; helix-turn-hel 89.1 0.75 2.5E-05 36.6 5.8 44 403-446 7-55 (64)
69 2y9y_A Imitation switch protei 85.7 0.66 2.3E-05 48.4 4.7 40 404-443 124-165 (374)
70 1ofc_X ISWI protein; nuclear p 83.9 0.85 2.9E-05 46.3 4.5 46 402-447 211-272 (304)
71 3ny3_A E3 ubiquitin-protein li 59.6 5.5 0.00019 32.4 2.8 39 351-393 7-50 (75)
72 2y9y_A Imitation switch protei 59.1 10 0.00034 39.6 5.2 45 403-447 228-288 (374)
73 2d8v_A Zinc finger FYVE domain 58.7 11 0.00039 30.1 4.3 46 346-394 9-54 (67)
74 3nis_A E3 ubiquitin-protein li 54.9 7.5 0.00026 32.2 2.8 40 350-393 10-54 (82)
75 1mzb_A Ferric uptake regulatio 53.0 12 0.00042 32.5 4.1 49 222-270 19-71 (136)
76 2fu4_A Ferric uptake regulatio 52.6 7.3 0.00025 30.6 2.4 50 222-271 18-71 (83)
77 2o03_A Probable zinc uptake re 52.4 16 0.00053 31.6 4.7 53 218-271 8-64 (131)
78 3e7l_A Transcriptional regulat 51.0 14 0.00047 28.1 3.6 27 408-434 18-44 (63)
79 2heo_A Z-DNA binding protein 1 49.7 14 0.00049 28.5 3.6 52 216-269 5-56 (67)
80 2w57_A Ferric uptake regulatio 47.8 13 0.00044 33.1 3.4 49 222-270 18-70 (150)
81 2xig_A Ferric uptake regulatio 44.3 21 0.00071 31.7 4.3 49 221-270 27-79 (150)
82 1v5n_A PDI-like hypothetical p 42.8 16 0.00054 30.3 3.0 30 346-376 48-77 (89)
83 2fe3_A Peroxide operon regulat 37.8 29 0.00099 30.5 4.1 49 222-271 23-75 (145)
84 3mwm_A ZUR, putative metal upt 37.1 46 0.0016 29.0 5.3 52 218-270 11-66 (139)
85 2htj_A P fimbrial regulatory p 36.1 29 0.00098 27.2 3.5 46 223-271 2-47 (81)
86 1ign_A Protein (RAP1); RAP1,ye 33.9 58 0.002 32.1 5.8 24 424-447 173-196 (246)
87 1weo_A Cellulose synthase, cat 33.4 24 0.00081 29.9 2.6 30 346-376 17-51 (93)
88 3eyy_A Putative iron uptake re 32.0 25 0.00087 31.0 2.8 47 222-270 20-70 (145)
89 1umq_A Photosynthetic apparatu 29.4 46 0.0016 27.1 3.7 30 405-434 37-66 (81)
90 2xb0_X Chromo domain-containin 29.2 43 0.0015 33.3 4.1 35 404-438 4-43 (270)
91 4ham_A LMO2241 protein; struct 28.2 79 0.0027 27.1 5.2 57 213-271 11-71 (134)
92 3tqn_A Transcriptional regulat 27.3 63 0.0022 27.0 4.3 55 215-271 11-66 (113)
93 4ets_A Ferric uptake regulatio 26.1 64 0.0022 29.0 4.4 48 222-270 34-87 (162)
94 3by6_A Predicted transcription 25.3 58 0.002 27.9 3.8 55 215-271 13-68 (126)
95 2olm_A Nucleoporin-like protei 25.2 86 0.0029 28.1 5.0 57 345-415 25-81 (140)
96 2ek5_A Predicted transcription 23.7 62 0.0021 28.0 3.7 55 215-271 6-61 (129)
97 1ntc_A Protein (nitrogen regul 23.6 45 0.0016 27.0 2.7 27 408-434 50-76 (91)
98 3dpt_A ROCO, RAB family protei 21.9 63 0.0022 32.7 3.8 61 213-275 12-75 (332)
99 3r0a_A Putative transcriptiona 20.4 1.3E+02 0.0043 25.4 5.0 50 223-273 28-77 (123)
100 3c7j_A Transcriptional regulat 20.1 40 0.0014 31.9 1.9 57 213-271 26-82 (237)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=1e-41 Score=296.80 Aligned_cols=96 Identities=34% Similarity=0.685 Sum_probs=84.6
Q ss_pred ceeeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHhhccCCCCCHHHHHHH
Q 010085 179 RVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRI 258 (518)
Q Consensus 179 h~iiIPSyS~WF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~crr~l~g~Dv~~i~RI 258 (518)
|+=.-|+|+.||++++||+|||++|||||+|++++|||++||+|||+||++||+||.+|||+|+||++|+| |+++|+||
T Consensus 9 ~~~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~g-Dv~~i~RV 87 (104)
T 2fq3_A 9 HHGMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSG-DAAALFRL 87 (104)
T ss_dssp --------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCS-CHHHHHHH
T ss_pred cCCCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccc-cHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHhhhhhcccccccCCC
Q 010085 259 FRFLNHWGIINYCAAVQ 275 (518)
Q Consensus 259 h~FLe~wGLINy~~~p~ 275 (518)
|+|||+|||||||++|+
T Consensus 88 h~FLe~wGLIN~~v~~~ 104 (104)
T 2fq3_A 88 HKFLTKWGLINYQVDSK 104 (104)
T ss_dssp HHHHHHTTSSSSCC---
T ss_pred HHHHHHcCeeccCCCCC
Confidence 99999999999999974
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=8.2e-41 Score=294.56 Aligned_cols=96 Identities=24% Similarity=0.370 Sum_probs=92.5
Q ss_pred ceeeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHhhccC--CCCCHHHHH
Q 010085 179 RVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLV--DGVSPEDLT 256 (518)
Q Consensus 179 h~iiIPSyS~WF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~crr~l--~g~Dv~~i~ 256 (518)
.+++||+|+.||++++||+|||++|||||+|+ ++|||++||+|||+||++||+||.+|||+|+||++| +| |+++|+
T Consensus 11 ~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~g-Dv~~i~ 88 (111)
T 2dce_A 11 EELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCG-DVNCIG 88 (111)
T ss_dssp CSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSS-CHHHHH
T ss_pred cCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhccccc-CHHHHH
Confidence 47999999999999999999999999999998 899999999999999999999999999999999999 46 999999
Q ss_pred HHHHhhhhhcccccccCCCC
Q 010085 257 RIFRFLNHWGIINYCAAVQS 276 (518)
Q Consensus 257 RIh~FLe~wGLINy~~~p~~ 276 (518)
|||+|||+|||||||+++..
T Consensus 89 RVh~FLe~wGLIN~~~~~~~ 108 (111)
T 2dce_A 89 RIHTYLELIGAINFGCEQAV 108 (111)
T ss_dssp HHHHHHHHHSSSSCSCTTSS
T ss_pred HHHHHHHHcCeeecCCChhh
Confidence 99999999999999999864
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.65 E-value=3.1e-16 Score=130.33 Aligned_cols=56 Identities=55% Similarity=1.147 Sum_probs=53.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhCCCCCCcCccc
Q 010085 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENV 457 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqLPIED~fLe~~ 457 (518)
....||.+|+.+||+||++||++|.+||++||+||+.||+.||+++||+|+|+.+.
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~ 72 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENS 72 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCC
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcccccccccC
Confidence 45789999999999999999999999999999999999999999999999999875
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.41 E-value=3e-13 Score=105.76 Aligned_cols=49 Identities=31% Similarity=0.681 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC-CCCHHHHHHHHhhCCCC
Q 010085 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRLPME 450 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehVG-tKT~eECi~HFlqLPIE 450 (518)
....||.+|+.+||++|++|| +||.+||++|+ +||+.||+.||.+++|.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 356899999999999999999 99999999999 99999999999999874
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.32 E-value=2.7e-12 Score=100.81 Aligned_cols=51 Identities=27% Similarity=0.588 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhCCCCC
Q 010085 401 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPMED 451 (518)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECi~HFlqLPIED 451 (518)
.....||.+|+.+||++|++|| ++|.+||++|++||+.||+.||.++.+..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 3467899999999999999999 89999999999999999999999987753
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.05 E-value=1.7e-10 Score=87.61 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECi~HFlqL 447 (518)
...||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 36899999999999999999 5999999999999999999999764
No 7
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.05 E-value=1.4e-10 Score=95.09 Aligned_cols=51 Identities=31% Similarity=0.595 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhhCCCCCC
Q 010085 401 IDGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPMEDG 452 (518)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yG----gNW~~IAehVGtKT~eECi~HFlqLPIED~ 452 (518)
.....||.+|+.+|++||.+|| ++|.+||++|++||..||+.||..| ++|+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~ 70 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGP 70 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHcc
Confidence 3467899999999999999999 6899999999999999999999986 4443
No 8
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.04 E-value=2.4e-10 Score=86.80 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECi~HFlqL 447 (518)
...||.+|+.+|+++|++|| ++|..||++|++||..||..||.++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46899999999999999999 6899999999999999999999864
No 9
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2e-10 Score=93.48 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC------CCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 401 IDGETWSDQETFLLLEGIEMYN------DNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yG------gNW~~IAehVGtKT~eECi~HFlqL 447 (518)
.....||.+|+.+|+++|++|| ++|.+||++|++||..||+.||.++
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~ 58 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKY 58 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3457899999999999999999 7899999999999999999999754
No 10
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.02 E-value=3.9e-10 Score=92.49 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhhCCC
Q 010085 402 DGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPM 449 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG----gNW~~IAehVGtKT~eECi~HFlqLPI 449 (518)
....||.+|+.+|++||..|+ ++|++||++||+||++||+.||..|+-
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 346899999999999999997 579999999999999999999999843
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.01 E-value=6.2e-10 Score=86.92 Aligned_cols=47 Identities=19% Similarity=0.516 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 401 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECi~HFlqL 447 (518)
.....||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 3457899999999999999999 7999999999999999999999864
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.99 E-value=5.8e-10 Score=90.38 Aligned_cols=47 Identities=15% Similarity=0.308 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
.....||.+|+.+||+++++||.+|..||++|++||..||..||..+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQY 53 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999998765
No 13
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.98 E-value=5.9e-10 Score=85.18 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC--CCCHHHHHHHHhhC
Q 010085 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yG-gNW~~IAehVG--tKT~eECi~HFlqL 447 (518)
..||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5799999999999999999 89999999999 99999999999864
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.4e-09 Score=87.50 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||.++
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 356899999999999999999 8999999999999999999999884
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.88 E-value=2e-09 Score=85.87 Aligned_cols=45 Identities=16% Similarity=0.440 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC--CCCHHHHHHHHhhC
Q 010085 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehVG--tKT~eECi~HFlqL 447 (518)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..|
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 46899999999999999999 89999999987 89999999999764
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.86 E-value=2.6e-09 Score=85.73 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC--CCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehVG--tKT~eECi~HFlqL 447 (518)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..+
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 356899999999999999999 89999999999 99999999999875
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=5.4e-09 Score=83.15 Aligned_cols=45 Identities=29% Similarity=0.544 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|+.+|+++++.||.+|.+||+.+| ||..||..||..+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~ 52 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFL 52 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHH
Confidence 45689999999999999999999999999665 9999999999875
No 18
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=8.9e-09 Score=81.14 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhh
Q 010085 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 446 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlq 446 (518)
...||.+|..+|++|+.+||.+|..||.+|++||..||+.||..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999864
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.75 E-value=6.9e-09 Score=88.71 Aligned_cols=45 Identities=24% Similarity=0.579 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG----gNW~~IAehVGtKT~eECi~HFlqL 447 (518)
...||.+|+.+|++||.+|+ +.|.+||++|++||.+||+.||..|
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46899999999999999996 5699999999999999999999986
No 20
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.18 E-value=1.4e-09 Score=91.91 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
.....||.+|+.+||+++++||.+|..||++|++||..||..||..+
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 34578999999999999999999999999999999999999999854
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.68 E-value=3.4e-08 Score=80.90 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
.....||.+|+.+|++++++||..|..||+++ +||..||..+|..|
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34579999999999999999998899999999 99999999999875
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.65 E-value=2.9e-08 Score=85.16 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECi~HFlqL 447 (518)
...||.+|+.+|+++|++|| ++|..||++|++||..||..||.++
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 46899999999999999999 6899999999999999999999884
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.64 E-value=3.6e-08 Score=85.25 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECi~HFlqL 447 (518)
..||.+|+.+|+++|++|| ++|..||++|++||+.||..+|.++
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHH
Confidence 4699999999999999999 6999999999999999999999873
No 24
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.59 E-value=5e-08 Score=95.16 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|..++++|+.+||.||..||++||+||..||+.||...
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 177 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999865
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.58 E-value=6.4e-08 Score=83.66 Aligned_cols=46 Identities=22% Similarity=0.495 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|+.+||+++..||.+|..||++|++||..||..||..|
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999764
No 26
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.57 E-value=8.5e-08 Score=85.20 Aligned_cols=46 Identities=22% Similarity=0.562 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||.++
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 357899999999999999999 6899999999999999999999873
No 27
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.56 E-value=6.2e-08 Score=86.15 Aligned_cols=46 Identities=15% Similarity=0.356 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|+.+|+++|++||.+|..||++|++||..||..||.++
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNY 55 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhh
Confidence 3568999999999999999999999999999999999999999873
No 28
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.56 E-value=6.9e-08 Score=80.91 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHH----hCCCCHHHHHHHHhhC
Q 010085 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEH----VSTKSKAQCILHFVRL 447 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yG-gNW~~IAeh----VGtKT~eECi~HFlqL 447 (518)
..||.+|+.+|++||++|| |+|.+|+++ +.+||..+|..||..+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 3699999999999999999 899999997 7899999999999876
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.55 E-value=6e-08 Score=83.18 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|+.+|++++..||.+|..||++|++||..||..||..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999753
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.53 E-value=7e-08 Score=85.79 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|+.+||+++..||.+|..||++|++||..||..||..|
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999874
No 31
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=2.6e-07 Score=73.29 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH-hCCCCHHHHHHHHh
Q 010085 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEH-VSTKSKAQCILHFV 445 (518)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yGgNW~~IAeh-VGtKT~eECi~HFl 445 (518)
.....||++|..++++||.+||-||..|+++ |++||..||+.+|.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3457899999999999999999999999997 99999999999985
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.47 E-value=1.7e-07 Score=83.28 Aligned_cols=46 Identities=15% Similarity=0.426 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|+.+||+++.+||.+|..||++|++||..+|..||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999865
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.44 E-value=7.1e-08 Score=86.21 Aligned_cols=44 Identities=20% Similarity=0.402 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECi~HFlqL 447 (518)
..||.+|+.+|+++|+.|| ++|..||++|++||..||..||.++
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNH 47 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhc
Confidence 5799999999999999999 8999999999999999999999874
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.44 E-value=1.9e-07 Score=83.41 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|+.+||+++..||.+|..||++|++||..+|..||..+
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS 98 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999875
No 35
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.42 E-value=1.4e-07 Score=103.89 Aligned_cols=87 Identities=20% Similarity=0.364 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHhhcc----CCCCCHHHHHHHHHh
Q 010085 186 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGL----VDGVSPEDLTRIFRF 261 (518)
Q Consensus 186 yS~WF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~crr~----l~g~Dv~~i~RIh~F 261 (518)
+++-|+.+.+|+.|+.+|||+..+. ..+...||.|||.|+.+|+.||..+||+.+|... +.. |...|.+|++|
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~~--~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~-~~~~i~~~~~~ 84 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSY 84 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGG-CHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcCc--hHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccC-ChHHHHHHHHH
Confidence 3567899999999999999998652 2345789999999999999999999999998433 334 77899999999
Q ss_pred hhhhcccccccCCC
Q 010085 262 LNHWGIINYCAAVQ 275 (518)
Q Consensus 262 Le~wGLINy~~~p~ 275 (518)
|.++|+||+++.+.
T Consensus 85 ~~~~~~~~~~~~~~ 98 (662)
T 2z3y_A 85 LERHGLINFGIYKR 98 (662)
T ss_dssp HHHTTSSSCSSCBC
T ss_pred HHHHHHHhcCCccc
Confidence 99999999887754
No 36
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.42 E-value=2.9e-07 Score=103.71 Aligned_cols=92 Identities=23% Similarity=0.283 Sum_probs=75.6
Q ss_pred CCceeeCCCCCCCCCC------------CCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHhh
Q 010085 177 GSRVHVLPMHSDWFSP------------DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQ 244 (518)
Q Consensus 177 qth~iiIPSyS~WF~~------------~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~cr 244 (518)
+++...+..|..+|-. +.++..|+..||||..+ +..||.|||.|+.+|+.||...||...|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~~------~~~yl~irn~il~~w~~np~~~l~~~~~~ 286 (776)
T 4gut_A 213 SVHVPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRD------PTMYLALRNLILALWYTNCKEALTPQKCI 286 (776)
T ss_dssp -----CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSSC------CHHHHHHHHHHHHHHHHCTTSCCCHHHHG
T ss_pred cccccccccccccccCCCccccchhcCCCcCChHHHHhChHHHhc------CceeeeehHHHHHHHHHCCceeeeHHHhh
Confidence 3456678889999977 99999999999999754 56999999999999999999999999998
Q ss_pred ccCCC---C---CHHHHHHHHHhhhhhcccccccCC
Q 010085 245 GLVDG---V---SPEDLTRIFRFLNHWGIINYCAAV 274 (518)
Q Consensus 245 r~l~g---~---Dv~~i~RIh~FLe~wGLINy~~~p 274 (518)
+.+.- . .+..+.+|++||.++|+||+++..
T Consensus 287 ~~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (776)
T 4gut_A 287 PHIIVRGLVRIRCVQEVERILYFMTRKGLINTGVLS 322 (776)
T ss_dssp GGCCCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTCC
T ss_pred hhcccccccccccHHHHHHHHHHHHHhhhhhccccc
Confidence 76632 1 346689999999999999998643
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.38 E-value=4e-07 Score=74.34 Aligned_cols=48 Identities=15% Similarity=0.372 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhhCCCCCC
Q 010085 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPMEDG 452 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG----gNW~~IAehVGtKT~eECi~HFlqLPIED~ 452 (518)
...||.+|..+|..||.+|+ +.|++||+++| ||.+||+.||..| .+|.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L-~~d~ 59 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQL-KDSV 59 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHH-HHSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHH-HHhc
Confidence 46899999999999999997 45999999995 9999999999988 6664
No 38
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.36 E-value=3.6e-07 Score=97.78 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|.+++|+||.+||.||..||++|||||..||+.||...
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999864
No 39
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.27 E-value=9e-07 Score=79.14 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh----CCCCHHHHHHHHhhC
Q 010085 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehV----GtKT~eECi~HFlqL 447 (518)
...||.+|+..|++||++|| |+|.+|+++. ..||..+|..+|..+
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 46899999999999999999 8999999986 689999999999886
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.26 E-value=1.1e-06 Score=80.68 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|+.+|+++++.|| .+|..||++|++||..||..||..+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999999 6899999999999999999999874
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.25 E-value=1.1e-06 Score=80.77 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|+.+||+++.+||..|..||++|++||..+|..||..+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999875
No 42
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.24 E-value=1.3e-06 Score=70.78 Aligned_cols=45 Identities=29% Similarity=0.451 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHH-hCCCCHHHHHHHHhhC
Q 010085 403 GETWSDQETFLLLEGIEMYNDNWNEIAEH-VSTKSKAQCILHFVRL 447 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yGgNW~~IAeh-VGtKT~eECi~HFlqL 447 (518)
...||++|..++++||.+||-||..|+++ |++||..||+.+|..-
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 36899999999999999999999999995 9999999999999743
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.22 E-value=8.1e-07 Score=77.52 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh----CCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehV----GtKT~eECi~HFlqL 447 (518)
....||.+|+..|++||++|| |+|.+|++.. .+||..+|..+|..|
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 357899999999999999999 8999999976 689999999999875
No 44
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=1.9e-06 Score=68.57 Aligned_cols=48 Identities=25% Similarity=0.541 Sum_probs=43.7
Q ss_pred CcCCCCCCC-CCcceeeecCCCCcccChhhhhcCCCCCCCC-CCCceeeC
Q 010085 346 NHCNYCSQP-IPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRVD 393 (518)
Q Consensus 346 ~~C~~C~~~-~~~v~y~c~k~~d~~LC~~CFs~G~~p~~hs-s~DF~kvd 393 (518)
..|+.|+.. +...+|+|..|.+++||..||..|++...|+ .|.|+++.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 579999975 8899999999999999999999999999997 68888764
No 45
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.15 E-value=1.4e-06 Score=77.76 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh----CCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehV----GtKT~eECi~HFlqL 447 (518)
....||.+|+..|++||++|| |+|.+|+++. ..||..+|..+|..|
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnl 66 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 66 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 357899999999999999999 7999999996 689999999999875
No 46
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.12 E-value=3e-06 Score=72.39 Aligned_cols=43 Identities=28% Similarity=0.442 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhh
Q 010085 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 446 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlq 446 (518)
..||.+|..++.+++..||.+|..||++|++||..||+.+|..
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999863
No 47
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.02 E-value=4.6e-07 Score=74.19 Aligned_cols=43 Identities=21% Similarity=0.492 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHh
Q 010085 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFV 445 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG----gNW~~IAehVGtKT~eECi~HFl 445 (518)
+..||.+|..+|-.||.+|. +.|++||+.||+||++||+.||-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 46899999999999999997 36999999999999999999983
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.88 E-value=1.2e-05 Score=63.84 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHH---HhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYNDNWNEIAE---HVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAe---hVGtKT~eECi~HFlqL 447 (518)
....||.+|+..||+||++||.+|.+|+. ++..||.-....+|-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 45789999999999999999999999995 56689999988888765
No 49
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.87 E-value=3.9e-06 Score=72.35 Aligned_cols=45 Identities=31% Similarity=0.604 Sum_probs=40.1
Q ss_pred CcCCCCCC-CCCcceeeecCCCCcccChhhhhcCCCCCCCCCCCceeeCC
Q 010085 346 NHCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDP 394 (518)
Q Consensus 346 ~~C~~C~~-~~~~v~y~c~k~~d~~LC~~CFs~G~~p~~hss~DF~kvd~ 394 (518)
..|+.|+. ++...+|+|..|.+++||..||..|. |..|.|+++..
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~----H~~H~f~~i~~ 77 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC----HLSHTFTFREK 77 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS----GGGSCEEECCS
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC----CCCCCeeEecC
Confidence 68999996 68889999999999999999999984 67899998764
No 50
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.84 E-value=1.6e-05 Score=66.35 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=45.7
Q ss_pred CCcCCCCCC-CCCcceeeecCCCC---cccChhhhhcCCCCCCCC-CCCceeeCCCC
Q 010085 345 ENHCNYCSQ-PIPAVYYQSQKEVD---VLLCPECFHEGRFVTGHS-SLDYIRVDPAR 396 (518)
Q Consensus 345 ~~~C~~C~~-~~~~v~y~c~k~~d---~~LC~~CFs~G~~p~~hs-s~DF~kvd~~k 396 (518)
...|+.|+. ++...+|+|..|.+ ++||..||..|++...|. .|.|+++....
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~ 77 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSS 77 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCC
Confidence 468999996 68889999999999 999999999999988996 79999887543
No 51
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.56 E-value=6.8e-05 Score=85.50 Aligned_cols=87 Identities=20% Similarity=0.379 Sum_probs=72.5
Q ss_pred CCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHh----hccCCCCCHHHHHHHHHh
Q 010085 186 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDC----QGLVDGVSPEDLTRIFRF 261 (518)
Q Consensus 186 yS~WF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~c----rr~l~g~Dv~~i~RIh~F 261 (518)
|.+.|+.+.+|..|+.+||++-..- -....+|+.+||.|+..|+.||...++...| +|.+.. |...|.+|++|
T Consensus 179 ~~~r~p~~~~~~~e~~~f~~~~~~~--~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~-~p~~i~~~~~~ 255 (852)
T 2xag_A 179 FQSRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSY 255 (852)
T ss_dssp HTTTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTS-CHHHHHHHHHH
T ss_pred HHhcCCCcccChHHHHHHHHHHHhh--hhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccC-CcHHHHHHHHH
Confidence 3578889999999999999986531 1245789999999999999999999998776 344454 88899999999
Q ss_pred hhhhcccccccCCC
Q 010085 262 LNHWGIINYCAAVQ 275 (518)
Q Consensus 262 Le~wGLINy~~~p~ 275 (518)
+.+|++||+++...
T Consensus 256 ~~~~~~~~~~~~~~ 269 (852)
T 2xag_A 256 LERHGLINFGIYKR 269 (852)
T ss_dssp HHHTTSSSCSSCBC
T ss_pred HHHHHHHhcCcccc
Confidence 99999999887653
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.46 E-value=6.7e-05 Score=73.85 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC------HHHHHHHhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYNDN------WNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgN------W~~IAehVGtKT~eECi~HFlqL 447 (518)
....||.+|+.+||+.+++||.. |.+||+++.+||..+|..||..+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY 58 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34689999999999999999843 99999999999999999999874
No 53
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=97.22 E-value=8.8e-05 Score=56.85 Aligned_cols=43 Identities=19% Similarity=0.461 Sum_probs=37.0
Q ss_pred CcCCCCCCCCCcceeeecCCCCcccChhhhhcCCCCCCCCCCCceeeCC
Q 010085 346 NHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDP 394 (518)
Q Consensus 346 ~~C~~C~~~~~~v~y~c~k~~d~~LC~~CFs~G~~p~~hss~DF~kvd~ 394 (518)
+.|+.|+..+ ..+|+|..|.+++||..||..|. | .|.++++..
T Consensus 7 ~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~----H-~H~m~~~~~ 49 (52)
T 1tot_A 7 YTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS----H-THKMVKWGL 49 (52)
T ss_dssp EEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC----C-CSSEEEECS
T ss_pred EECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC----C-CCceEEecC
Confidence 5799999886 68999999999999999999975 5 588887753
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.61 E-value=0.0011 Score=54.84 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHcC----------CCHHHHHHHhC----CCCHHHHHHHHhhCCC
Q 010085 404 ETWSDQETFLLLEGIEMYN----------DNWNEIAEHVS----TKSKAQCILHFVRLPM 449 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yG----------gNW~~IAehVG----tKT~eECi~HFlqLPI 449 (518)
..||.+|+++||++..... .-|+.||+.|. .||++||..+|-.|--
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5799999999999996532 27999999985 6999999999988743
No 55
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.31 E-value=0.0053 Score=52.42 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHh-----CCCCHHHHHHHHhhC
Q 010085 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHV-----STKSKAQCILHFVRL 447 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yGgNW~~IAehV-----GtKT~eECi~HFlqL 447 (518)
.+||.+|+..|++.+++|+-.|--|+... +.||-++...+|..+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999 479999999999764
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.05 E-value=0.0084 Score=51.00 Aligned_cols=44 Identities=14% Similarity=0.300 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yG---gNW~~IAehVGtKT~eECi~HFlqL 447 (518)
--||.+|+..+|.+-++-| .-|..||+.+|+||++|...+|.+|
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3699999999999999988 4899999999999999999999986
No 57
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.75 E-value=0.0076 Score=47.12 Aligned_cols=43 Identities=9% Similarity=0.261 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHc--------C-CCHHHHHH-HhCCCCHHHHHHHHhh
Q 010085 404 ETWSDQETFLLLEGIEMY--------N-DNWNEIAE-HVSTKSKAQCILHFVR 446 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~y--------G-gNW~~IAe-hVGtKT~eECi~HFlq 446 (518)
..+|.+|+..|++-|..| | .-|+++|+ .+..+|-+.|..||++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 479999999999999999 3 34999999 8999999999999987
No 58
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.59 E-value=0.009 Score=60.75 Aligned_cols=40 Identities=23% Similarity=0.431 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHH
Q 010085 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILH 443 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECi~H 443 (518)
..||..+-..++.|.++|| ++|..||..|++||++|...+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y 151 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEY 151 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHH
Confidence 4799999999999999999 999999999999999998655
No 59
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.50 E-value=0.0023 Score=68.66 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECi~HFlqL 447 (518)
..||.+|..++.+|+.+||.||..|+++|++||..||+.+|..-
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~W 233 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSW 233 (482)
T ss_dssp --------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccc
Confidence 47999999999999999999999999999999999999998764
No 60
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=95.33 E-value=0.028 Score=47.45 Aligned_cols=70 Identities=16% Similarity=0.377 Sum_probs=58.5
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHhhccCCCCCHHHHHHHHHhhhhhcccc
Q 010085 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (518)
Q Consensus 191 ~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~crr~l~g~Dv~~i~RIh~FLe~wGLIN 269 (518)
+.+-+|+-|++-+-.. .-.|..||.+...||.-...+. .++.++||..+. +|++-..||+.||.+.|+|+
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~li~E~~~~g--~l~k~da~~~~k-iD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIK-IDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHS--CCCHHHHHTTSS-SSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHc-ccHHHHHHHHHHHHHcCCCC
Confidence 4567899999866543 4579999999999999986543 389999998865 69999999999999999995
No 61
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=95.18 E-value=0.033 Score=48.69 Aligned_cols=70 Identities=16% Similarity=0.377 Sum_probs=59.2
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHhhccCCCCCHHHHHHHHHhhhhhcccc
Q 010085 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (518)
Q Consensus 191 ~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~crr~l~g~Dv~~i~RIh~FLe~wGLIN 269 (518)
+.+-+|+-|++-+-.. .-.|..||.+...||.-...+. .|+.++||..+. +|++-..||+.||.+.|+|+
T Consensus 37 g~~LLs~~E~~LCs~l------rL~P~~YL~iK~~Li~E~~k~g--~lkk~dA~~l~k-ID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIK-IDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHT-SCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHhc-ccHHHHHHHHHHHHHcCCCC
Confidence 4568899999976554 4579999999999999986543 399999998865 69999999999999999995
No 62
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.048 Score=45.82 Aligned_cols=70 Identities=17% Similarity=0.361 Sum_probs=58.6
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceEeHHHhhccCCCCCHHHHHHHHHhhhhhccc
Q 010085 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGII 268 (518)
Q Consensus 191 ~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~crr~l~g~Dv~~i~RIh~FLe~wGLI 268 (518)
+.+-+|+-|++-+-.. .-.|..|+.+.+.||.-+..+ ...++.++||..+. +|++-..||+.||.+-|+|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~k-iD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELLN-IDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHTT-SCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHc-ccHHHHHHHHHHHHHcCCC
Confidence 4567889999866443 457999999999999988654 45689999998864 7999999999999999987
No 63
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.13 E-value=0.0091 Score=48.26 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHcCC---CHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 404 ETWSDQETFLLLEGIEMYND---NWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yGg---NW~~IAehVGtKT~eECi~HFlqL 447 (518)
--||.+|+-.+|...++-|- -|..||+.+ +||++|...+|.+|
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 36999999999999999884 799999999 79999999999987
No 64
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.68 E-value=0.11 Score=44.43 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHhC-----CCCHHHHHHHHhhC
Q 010085 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVS-----TKSKAQCILHFVRL 447 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yGgNW~~IAehVG-----tKT~eECi~HFlqL 447 (518)
...||.+|+..|++.+++|+-.|--|+.... .||-|+-..+|.++
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999874 69999999999764
No 65
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=93.30 E-value=0.074 Score=53.26 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=28.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh
Q 010085 401 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEHV 432 (518)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yG-gNW~~IAehV 432 (518)
.....|+.+|+..||-||.+|| |+|+.|-.--
T Consensus 166 ~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 166 NWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCCCCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 3457899999999999999999 9999997643
No 66
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.78 E-value=0.087 Score=49.70 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh
Q 010085 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHV 432 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehV 432 (518)
...||.+|+..||-||.+|| |+|+.|-.-.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 46799999999999999999 9999987743
No 67
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.75 E-value=0.36 Score=45.45 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHhC--CCCHHHHHH
Q 010085 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVS--TKSKAQCIL 442 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yG---gNW~~IAehVG--tKT~eECi~ 442 (518)
..||..|...|+.|+.+|| +.|+.|++... .||.++...
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence 5899999999999999999 68999999864 799887665
No 68
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=89.10 E-value=0.75 Score=36.65 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---HHHHHHHhC--CCCHHHHHHHHhh
Q 010085 403 GETWSDQETFLLLEGIEMYNDN---WNEIAEHVS--TKSKAQCILHFVR 446 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yGgN---W~~IAehVG--tKT~eECi~HFlq 446 (518)
.-.||.+.-..+++||+..|.+ |..|-+.|+ +-|.+++..|.-.
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3479999999999999999955 899999998 4699999888543
No 69
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=85.72 E-value=0.66 Score=48.39 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC-CCCHHHHHHH
Q 010085 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILH 443 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yG-gNW~~IAehVG-tKT~eECi~H 443 (518)
.+||..+-..++.|.++|| +|-..||..|+ +||++|...+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y 165 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAY 165 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHH
Confidence 4799999999999999999 99999999998 9999998743
No 70
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=83.92 E-value=0.85 Score=46.33 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHH------------HhCCCCHHHHHHHHhhC
Q 010085 402 DGETWSDQETFLLLEGIEMYN----DNWNEIAE------------HVSTKSKAQCILHFVRL 447 (518)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG----gNW~~IAe------------hVGtKT~eECi~HFlqL 447 (518)
.+..||.+|+-.||-+|.+|| |+|++|-. ++.+||+.|+..|--.|
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 356899999999999999998 68999984 45589999988776554
No 71
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=59.64 E-value=5.5 Score=32.40 Aligned_cols=39 Identities=23% Similarity=0.458 Sum_probs=26.8
Q ss_pred CCCCCC--cceeeecCCC---CcccChhhhhcCCCCCCCCCCCceeeC
Q 010085 351 CSQPIP--AVYYQSQKEV---DVLLCPECFHEGRFVTGHSSLDYIRVD 393 (518)
Q Consensus 351 C~~~~~--~v~y~c~k~~---d~~LC~~CFs~G~~p~~hss~DF~kvd 393 (518)
|+.... .+.|+|..|. ...||.+||..+ .|..|+|.+..
T Consensus 7 Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~----~H~gH~~~~~~ 50 (75)
T 3ny3_A 7 CGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGS----IHRDHRYRMTT 50 (75)
T ss_dssp CCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTS----GGGGSCEEEEE
T ss_pred cCCcccCCCEEEECccCCCCCCeeEChHHCCCC----CcCCceEEEEE
Confidence 444443 3567776663 357999999876 57888988754
No 72
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=59.09 E-value=10 Score=39.61 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHh------------CCCCHHHHHHHHhhC
Q 010085 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHV------------STKSKAQCILHFVRL 447 (518)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG----gNW~~IAehV------------GtKT~eECi~HFlqL 447 (518)
+..||.+|+-.||=+|.+|| |+|++|-..| .+||+.|+..|--.|
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tL 288 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTL 288 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 56899999999999999998 7899997775 489999987775544
No 73
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=58.70 E-value=11 Score=30.13 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=32.9
Q ss_pred CcCCCCCCCCCcceeeecCCCCcccChhhhhcCCCCCCCCCCCceeeCC
Q 010085 346 NHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDP 394 (518)
Q Consensus 346 ~~C~~C~~~~~~v~y~c~k~~d~~LC~~CFs~G~~p~~hss~DF~kvd~ 394 (518)
.-|..|..+. .++|..|.+-.-|..||-++..--....|..++...
T Consensus 9 pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~~ 54 (67)
T 2d8v_A 9 PWCCICNEDA---TLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHP 54 (67)
T ss_dssp SSCTTTCSCC---CEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCCC
T ss_pred CeeEEeCCCC---eEEecCCCCceehHHHHHHHccchhhhccceeeccC
Confidence 5799998875 388999977789999999988543334455554443
No 74
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=54.88 E-value=7.5 Score=32.20 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=27.7
Q ss_pred CCCCCCC--cceeeecCCC---CcccChhhhhcCCCCCCCCCCCceeeC
Q 010085 350 YCSQPIP--AVYYQSQKEV---DVLLCPECFHEGRFVTGHSSLDYIRVD 393 (518)
Q Consensus 350 ~C~~~~~--~v~y~c~k~~---d~~LC~~CFs~G~~p~~hss~DF~kvd 393 (518)
.|+.... .+.|+|..|. ...||.+||..+ .|..|+|....
T Consensus 10 ~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s----~H~gH~~~~~~ 54 (82)
T 3nis_A 10 NCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPK----DHVNHHVCTDI 54 (82)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGG----GGTTSCEEEEE
T ss_pred CCCCcccCCCEEEEeeccCCCCCceEchhhCCCC----CcCCceEEEEE
Confidence 3555444 3677777763 467999999875 57889998753
No 75
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=52.99 E-value=12 Score=32.52 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCceEeHHHhhccC----CCCCHHHHHHHHHhhhhhccccc
Q 010085 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (518)
Q Consensus 222 ~RN~iI~~yr~np~~yLT~t~crr~l----~g~Dv~~i~RIh~FLe~wGLINy 270 (518)
-|-.|++....++...+|+.+.-..| .+++...+.|...+|+..|||.-
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 46678887766543789999975544 35899999999999999999964
No 76
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=52.58 E-value=7.3 Score=30.58 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCceEeHHHhhccC----CCCCHHHHHHHHHhhhhhcccccc
Q 010085 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (518)
Q Consensus 222 ~RN~iI~~yr~np~~yLT~t~crr~l----~g~Dv~~i~RIh~FLe~wGLINy~ 271 (518)
-|-.|++.....+...+|+.+.-..+ .+++...|.|....|+..|+|.-.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 35567776654432679999975555 357899999999999999999643
No 77
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=52.42 E-value=16 Score=31.63 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhCCCceEeHHHhhccC----CCCCHHHHHHHHHhhhhhcccccc
Q 010085 218 KYMECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (518)
Q Consensus 218 ~Y~~~RN~iI~~yr~np~~yLT~t~crr~l----~g~Dv~~i~RIh~FLe~wGLINy~ 271 (518)
+.-.-|-.|++..... ...+|+.+.-..| .+++...+.|...+|+..|||.--
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEE
Confidence 4455688899888654 5789999975554 458999999999999999999643
No 78
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=51.00 E-value=14 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCC
Q 010085 408 DQETFLLLEGIEMYNDNWNEIAEHVST 434 (518)
Q Consensus 408 ~eEellLLEaIe~yGgNW~~IAehVGt 434 (518)
.-|...|.++++.++||+.++|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 457788999999999999999999994
No 79
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=49.73 E-value=14 Score=28.47 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCceEeHHHhhccCCCCCHHHHHHHHHhhhhhcccc
Q 010085 216 PEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (518)
Q Consensus 216 pe~Y~~~RN~iI~~yr~np~~yLT~t~crr~l~g~Dv~~i~RIh~FLe~wGLIN 269 (518)
|+.-.+.|..|++....+ ..++|.++.-+.+ |+.-..+.|+.+=|+..|+|-
T Consensus 5 ~~~m~~~~~~IL~~L~~~-~~~~s~~eLA~~l-glsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDD-GGPVAIFQLVKKC-QVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp ----CHHHHHHHHHHHHH-CSCEEHHHHHHHH-CSCHHHHHHHHHHHHHTTSEE
T ss_pred cccccHHHHHHHHHHHHc-CCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEe
Confidence 443345788999998765 3579999976665 578999999999999999984
No 80
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.80 E-value=13 Score=33.14 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCceEeHHHhhccC----CCCCHHHHHHHHHhhhhhccccc
Q 010085 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (518)
Q Consensus 222 ~RN~iI~~yr~np~~yLT~t~crr~l----~g~Dv~~i~RIh~FLe~wGLINy 270 (518)
-|-.|++....++...+|+.+.-..| .+++...|.|...+|+..|||.-
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 46677877755432789999975554 35899999999999999999964
No 81
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.29 E-value=21 Score=31.72 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCceEeHHHhhccC----CCCCHHHHHHHHHhhhhhccccc
Q 010085 221 ECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (518)
Q Consensus 221 ~~RN~iI~~yr~np~~yLT~t~crr~l----~g~Dv~~i~RIh~FLe~wGLINy 270 (518)
.-|-.|++....+ ...+|+.+.-..| .+++...+.|...+|+..|||.-
T Consensus 27 ~qR~~IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 27 KQREEVVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 3577888888776 4589999975554 35899999999999999999964
No 82
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=42.80 E-value=16 Score=30.31 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=26.5
Q ss_pred CcCCCCCCCCCcceeeecCCCCcccChhhhh
Q 010085 346 NHCNYCSQPIPAVYYQSQKEVDVLLCPECFH 376 (518)
Q Consensus 346 ~~C~~C~~~~~~v~y~c~k~~d~~LC~~CFs 376 (518)
+.|+.|+.......|+|..| ++.|-..|..
T Consensus 48 ~~C~~C~~~~~~~~Y~C~~C-~f~lH~~Ca~ 77 (89)
T 1v5n_A 48 YTCDKCEEEGTIWSYHCDEC-DFDLHAKCAL 77 (89)
T ss_dssp CCCTTTSCCCCSCEEECTTT-CCCCCHHHHH
T ss_pred eEeCCCCCcCCCcEEEcCCC-CCeEcHHhcC
Confidence 67999999988889999988 6999999975
No 83
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.75 E-value=29 Score=30.48 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCceEeHHHhhccC----CCCCHHHHHHHHHhhhhhcccccc
Q 010085 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (518)
Q Consensus 222 ~RN~iI~~yr~np~~yLT~t~crr~l----~g~Dv~~i~RIh~FLe~wGLINy~ 271 (518)
-|-.|++..... ...+|+.+.-..| .+++...|.|...+|+..|||.--
T Consensus 23 qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 23 QRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp HHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEE
Confidence 466788877654 5689999975444 358899999999999999999643
No 84
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=37.08 E-value=46 Score=29.05 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhCCCceEeHHHhhccC----CCCCHHHHHHHHHhhhhhccccc
Q 010085 218 KYMECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (518)
Q Consensus 218 ~Y~~~RN~iI~~yr~np~~yLT~t~crr~l----~g~Dv~~i~RIh~FLe~wGLINy 270 (518)
+.-.-|-.|++....++ ..+|+.+.-..| .+++...+.|...+|+.-|||.-
T Consensus 11 r~T~qR~~Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 11 RATRQRAAVSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHHHHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred ccCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45567888998876654 699999975544 34899999999999999999954
No 85
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=36.10 E-value=29 Score=27.15 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCceEeHHHhhccCCCCCHHHHHHHHHhhhhhcccccc
Q 010085 223 RNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (518)
Q Consensus 223 RN~iI~~yr~np~~yLT~t~crr~l~g~Dv~~i~RIh~FLe~wGLINy~ 271 (518)
|..|+.....++ .+|+.+.-+.+ |+....+.|...-|+..|+|-..
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~l-gvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEAL-AVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 677887776653 48998876665 57889999999999999999754
No 86
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=33.88 E-value=58 Score=32.11 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=21.9
Q ss_pred CHHHHHHHhCCCCHHHHHHHHhhC
Q 010085 424 NWNEIAEHVSTKSKAQCILHFVRL 447 (518)
Q Consensus 424 NW~~IAehVGtKT~eECi~HFlqL 447 (518)
-|..||++..++|......+|..+
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKf 196 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKF 196 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCChhhHHHHHHHH
Confidence 599999999999999999998865
No 87
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=33.38 E-value=24 Score=29.94 Aligned_cols=30 Identities=17% Similarity=0.616 Sum_probs=23.9
Q ss_pred CcCCCCCCCCC-----cceeeecCCCCcccChhhhh
Q 010085 346 NHCNYCSQPIP-----AVYYQSQKEVDVLLCPECFH 376 (518)
Q Consensus 346 ~~C~~C~~~~~-----~v~y~c~k~~d~~LC~~CFs 376 (518)
..|..|+.++. .++..|.+| .|-+|..||.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC-~FPvCrpCyE 51 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNEC-GFPACRPCYE 51 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSS-CCCCCHHHHH
T ss_pred CccccccCccccCCCCCEEEeeecc-CChhhHHHHH
Confidence 47999998764 378888887 5889999986
No 88
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.99 E-value=25 Score=30.98 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCCceEeHHHhhccC----CCCCHHHHHHHHHhhhhhccccc
Q 010085 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (518)
Q Consensus 222 ~RN~iI~~yr~np~~yLT~t~crr~l----~g~Dv~~i~RIh~FLe~wGLINy 270 (518)
-|..|++....++ .+|+.+.-..| .+++...+.|...+|+.-|||.-
T Consensus 20 qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 20 QRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 4566777666654 79988864333 34899999999999999999954
No 89
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=29.39 E-value=46 Score=27.10 Aligned_cols=30 Identities=17% Similarity=0.047 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHhCC
Q 010085 405 TWSDQETFLLLEGIEMYNDNWNEIAEHVST 434 (518)
Q Consensus 405 ~WT~eEellLLEaIe~yGgNW~~IAehVGt 434 (518)
....-|...|.++++.++||..+.|+.+|-
T Consensus 37 ~l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 37 SADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 345567788899999999999999999983
No 90
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=29.16 E-value=43 Score=33.27 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHh--CCCCHH
Q 010085 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHV--STKSKA 438 (518)
Q Consensus 404 ~~WT~eEellLLEaIe~yG---gNW~~IAehV--GtKT~e 438 (518)
..||+.|...|+.++.+|| +.|+.|+.-- ..|+.+
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~ 43 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFE 43 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHH
Confidence 5799999999999999999 6799998763 256653
No 91
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=28.16 E-value=79 Score=27.13 Aligned_cols=57 Identities=12% Similarity=0.307 Sum_probs=41.9
Q ss_pred CCCh---HHHHHHHHHHHHHHHhCCCceE-eHHHhhccCCCCCHHHHHHHHHhhhhhcccccc
Q 010085 213 DHTP---EKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (518)
Q Consensus 213 ~ktp---e~Y~~~RN~iI~~yr~np~~yL-T~t~crr~l~g~Dv~~i~RIh~FLe~wGLINy~ 271 (518)
++.| ++|-.||+.|++-- ..|...| |..+.-..+ |+-...+.+.+.-|+.-|||-..
T Consensus 11 s~~PlY~QI~~~i~~~I~~G~-l~pG~~LPser~La~~~-gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 11 SQLPIYEQIVQKIKEQVVKGV-LQEGEKILSIREFASRI-GVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHHTS-SCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CCCCCCCccHHHHHHHH-CCCHHHHHHHHHHHHHCCcEEEE
Confidence 4454 55666666666543 5789999 776644444 67889999999999999999765
No 92
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=27.27 E-value=63 Score=27.01 Aligned_cols=55 Identities=7% Similarity=0.024 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHHHHhCCCceE-eHHHhhccCCCCCHHHHHHHHHhhhhhcccccc
Q 010085 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (518)
Q Consensus 215 tpe~Y~~~RN~iI~~yr~np~~yL-T~t~crr~l~g~Dv~~i~RIh~FLe~wGLINy~ 271 (518)
.-++|-.||..|++-- ..|...| |..+.-..+ |+--..+.+...-|+..|||-..
T Consensus 11 ~~~i~~~i~~~I~~g~-~~~G~~lPs~~~La~~~-~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGS-YVEGEMIPSIRKISTEY-QINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHHHHHHTS-SCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHcCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 3466777777776643 4688899 787765554 56788999999999999999654
No 93
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.09 E-value=64 Score=29.01 Aligned_cols=48 Identities=8% Similarity=0.092 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCceEeHHHhhccC------CCCCHHHHHHHHHhhhhhccccc
Q 010085 222 CRNHIVAKYMDNPEKRLIVSDCQGLV------DGVSPEDLTRIFRFLNHWGIINY 270 (518)
Q Consensus 222 ~RN~iI~~yr~np~~yLT~t~crr~l------~g~Dv~~i~RIh~FLe~wGLINy 270 (518)
-|-.|++....+ ...+|+.+.-..| .+++...+.|...+|+.-|||.=
T Consensus 34 qR~~IL~~L~~~-~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 34 QREVLLKTLYHS-DTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHSC-CSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 466788877665 4899999874333 34789999999999999999964
No 94
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=25.31 E-value=58 Score=27.94 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHHHHhCCCceE-eHHHhhccCCCCCHHHHHHHHHhhhhhcccccc
Q 010085 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (518)
Q Consensus 215 tpe~Y~~~RN~iI~~yr~np~~yL-T~t~crr~l~g~Dv~~i~RIh~FLe~wGLINy~ 271 (518)
.-++|-.||+.|+.-- ..|...| +..+.-..+ |+--..+.+...-|+..|||-..
T Consensus 13 ~~~i~~~l~~~I~~g~-~~~G~~lPse~~La~~~-~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 13 YLQLVDRIKNEVATDV-LSANDQLPSVRETALQE-KINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp HHHHHHHHHHHHHTTS-SCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 3467777777777643 5688999 888865554 57888999999999999999543
No 95
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=25.18 E-value=86 Score=28.12 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=33.0
Q ss_pred CCcCCCCCCCCCcceeeecCCCCcccChhhhhcCCCCCCCCCCCceeeCCCCCCCCCCCCCCCHHHHHHHH
Q 010085 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLL 415 (518)
Q Consensus 345 ~~~C~~C~~~~~~v~y~c~k~~d~~LC~~CFs~G~~p~~hss~DF~kvd~~k~~~~~~~~~WT~eEellLL 415 (518)
...|.-|+.. ...+-+.. ..+.+|.+|-.-=+..+.| .+++- ..-+.||.+|...|.
T Consensus 25 N~~CaDCg~~--~P~WaS~n-~GvfiC~~CsgiHR~LG~~---s~VrS--------l~ld~w~~~~l~~m~ 81 (140)
T 2olm_A 25 NRKCFDCDQR--GPTYVNMT-VGSFVCTSCSGSLRGLNPP---HRVKS--------ISMTTFTQQEIEFLQ 81 (140)
T ss_dssp GGSCTTTCSS--CCCEEETT-TTEEECHHHHHHHTTSSSC---CCEEE--------TTTCCCCHHHHHHHH
T ss_pred CCcCCCCCCC--CCCceeec-cCEEEchhccchhccCCCc---ceeee--------cCCCCCCHHHHHHHH
Confidence 3578888864 34444433 4688999997644433223 34442 112469987765554
No 96
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=23.69 E-value=62 Score=27.97 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHHHHhCCCceE-eHHHhhccCCCCCHHHHHHHHHhhhhhcccccc
Q 010085 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (518)
Q Consensus 215 tpe~Y~~~RN~iI~~yr~np~~yL-T~t~crr~l~g~Dv~~i~RIh~FLe~wGLINy~ 271 (518)
.-++|-.||+.|+.-- ..|...| |..+.-..+ |+--..+.+...-|+..|||-..
T Consensus 6 ~~~i~~~i~~~I~~g~-l~~G~~LPse~~La~~~-gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGT-LSIDQRVPSTNELAAFH-RINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp HHHHHHHHHHHHHTTS-SCTTSCBCCHHHHHHHT-TCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHHhCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEEEe
Confidence 3567888888887653 5788999 887765554 57888999999999999999654
No 97
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.63 E-value=45 Score=27.02 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCC
Q 010085 408 DQETFLLLEGIEMYNDNWNEIAEHVST 434 (518)
Q Consensus 408 ~eEellLLEaIe~yGgNW~~IAehVGt 434 (518)
.-|...|.++++.++||..++|+.+|-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LGI 76 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLGW 76 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 457788999999999999999999993
No 98
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=21.85 E-value=63 Score=32.72 Aligned_cols=61 Identities=16% Similarity=0.434 Sum_probs=42.8
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCceEeHHHhhccC--CC-CCHHHHHHHHHhhhhhcccccccCCC
Q 010085 213 DHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLV--DG-VSPEDLTRIFRFLNHWGIINYCAAVQ 275 (518)
Q Consensus 213 ~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~crr~l--~g-~Dv~~i~RIh~FLe~wGLINy~~~p~ 275 (518)
.+-|..|+.+|+.+.+. +. ...|||.+++++.. +| .+-..+..+..||...|.|-|--+..
T Consensus 12 ~~iP~sW~~l~~~L~~~-~~-~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~il~f~d~~ 75 (332)
T 3dpt_A 12 TPLAPSWIKVKEKLVEA-TT-AQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEALD 75 (332)
T ss_dssp -----CHHHHHHHHHHH-HH-HSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSSEECTTTC
T ss_pred CccCHHHHHHHHHHHhh-hc-CCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEEEEecCCc
Confidence 35799999999999886 33 35899999986442 45 34346889999999999998876554
No 99
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=20.38 E-value=1.3e+02 Score=25.44 Aligned_cols=50 Identities=8% Similarity=0.213 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCceEeHHHhhccCCCCCHHHHHHHHHhhhhhcccccccC
Q 010085 223 RNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAA 273 (518)
Q Consensus 223 RN~iI~~yr~np~~yLT~t~crr~l~g~Dv~~i~RIh~FLe~wGLINy~~~ 273 (518)
+-.|+..-..++..++|+.+.-..+ |++...+.|...-|+..|+|--...
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l-~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSL-KLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHH-TSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 3345554445655459999987766 4799999999999999999976533
No 100
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=20.07 E-value=40 Score=31.88 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=47.8
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCceEeHHHhhccCCCCCHHHHHHHHHhhhhhcccccc
Q 010085 213 DHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (518)
Q Consensus 213 ~ktpe~Y~~~RN~iI~~yr~np~~yLT~t~crr~l~g~Dv~~i~RIh~FLe~wGLINy~ 271 (518)
+..+.+|-.||+.|+.-. ..|...|+..+--..+ |+--..|.+-..-|+.-|||-..
T Consensus 26 s~~~~v~~~L~~~I~~g~-l~pG~~L~e~~La~~l-gVSr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDGS-LPSGTALRQQELATLF-GVSRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp GHHHHHHHHHHHHHHTSS-SCTTCBCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhCC-CCCcCeeCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEe
Confidence 456779999999999854 5789999988865555 67888999999999999999765
Done!