BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010086
         (518 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
           From Aquifex Aeolicus
 pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
           From Aquifex Aeolicus
          Length = 219

 Score = 34.7 bits (78), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHVRAKDE 211
           V+  E ++IP   NT DF+F+      + S+PL F  E+ R  KP  +  +    K+E
Sbjct: 92  VLKSEENKIPLPDNTVDFIFM-AFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEE 148


>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
           Thuringiensis
          Length = 242

 Score = 30.4 bits (67), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 155 ISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAVVHV 206
           I G+   +PF+   F+ +    + LE   +PL   +EI R LK +G+A + +
Sbjct: 103 IKGDLSSLPFENEQFEAIXAINS-LEWTEEPLRALNEIKRVLKSDGYACIAI 153


>pdb|3UP0|A Chain A, Nuclear Receptor Daf-12 From Hookworm Ancylostoma
           Ceylanicum In Complex With (25s)-Delta7-Dafachronic Acid
 pdb|3UP0|B Chain B, Nuclear Receptor Daf-12 From Hookworm Ancylostoma
           Ceylanicum In Complex With (25s)-Delta7-Dafachronic Acid
 pdb|3UP3|A Chain A, Nuclear Receptor Daf-12 From Hookworm Ancylostoma
           Ceylanicum In Complex With (25s)-Cholestenoic Acid
          Length = 243

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 296 ITMKRNIKNIKYLPSMADISFKNRYVYVD---------VGARSYGSSIGSW 337
           +TM+R +K  K LP+  D+S   ++  +           G R + SS GSW
Sbjct: 52  VTMRRFVKMAKRLPAFNDLSQDGKFALLKGGMIEMLTVRGVRRFDSSSGSW 102


>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
 pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
           Group
          Length = 168

 Score = 29.6 bits (65), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 394 KEVVVKGRGMGRIQPVQSLSDGGFDGEVDRIQGFDFADWLKNTVTDKDFVVMKMDVEGT- 452
           K VVV    +G+   +Q    G F  +  +  G DF +  +  V D+D  +M  D  G  
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLE-RQIQVNDEDVRLMLWDTAGQE 65

Query: 453 EFDLIPRLFETGA 465
           EFD I + +  GA
Sbjct: 66  EFDAITKAYYRGA 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,269,134
Number of Sequences: 62578
Number of extensions: 637732
Number of successful extensions: 1288
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 5
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)