BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010086
(518 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CSH9|UBIE_STAES Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=ubiE PE=3 SV=1
Length = 241
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PFD N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMNLPFDDNSFDYVTIGFG-LRNVPDYLSALKEMHRVLKPGGMVV 150
>sp|Q5HP74|UBIE_STAEQ Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=ubiE PE=3 SV=1
Length = 241
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PFD N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMNLPFDDNSFDYVTIGFG-LRNVPDYLSALKEMHRVLKPGGMVV 150
>sp|Q67LE6|UBIE_SYMTH Demethylmenaquinone methyltransferase OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ubiE PE=3 SV=1
Length = 251
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 135 KEIGVEDSIGIFKKSSKPLVIS----------GEGHRIPFDGNTFDFVFVGGARLEKASK 184
K IGV+ S G+ + + + S G +PF NTFD V +G A AS
Sbjct: 82 KVIGVDISEGMLEVGRRRVAASPYKDLITLQLGNAMDLPFPDNTFDGVTMGWAMRNVASI 141
Query: 185 PLDFASEIVRTLKPEG 200
P SEI R LKP G
Sbjct: 142 PRTL-SEIYRVLKPGG 156
>sp|O14321|ERG6_SCHPO Sterol 24-C-methyltransferase erg6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=erg6 PE=2 SV=1
Length = 378
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 25/101 (24%)
Query: 151 KPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEG-FAVVHVRAK 209
K + + G+ +PF+ NTFD+V+ A + S + EI R LKP G F V
Sbjct: 175 KQVFVKGDFMHMPFEDNTFDYVYAIEATVHAPSLEGVYG-EIFRVLKPGGVFGVYEWVMS 233
Query: 210 DEYSFNSFLDLFNSCKLVKSRDIDGIDSSLPYIREIVLKKE 250
D+Y DSS+P REI E
Sbjct: 234 DDY-----------------------DSSIPKHREIAYNIE 251
>sp|A8FEK9|UBIE_BACP2 Demethylmenaquinone methyltransferase OS=Bacillus pumilus (strain
SAFR-032) GN=ubiE PE=3 SV=1
Length = 234
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G +PF+ NTFD+V +G L L E+ R +KP G V
Sbjct: 102 LLHGNAMELPFEDNTFDYVTIGFG-LRNVPDYLTVLKEMTRVVKPGGMVV 150
>sp|A6UWM0|PDXS_META3 Pyridoxal biosynthesis lyase PdxS OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=pdxS PE=3 SV=1
Length = 299
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 18/131 (13%)
Query: 97 AVNFYSSVFQDLISEGYLSQSAKS---LCVETQYGQDVFALKEIG--VE----DSIGI-F 146
AV V D+ +EG +S+ + L ++ + V A IG VE +S+GI
Sbjct: 41 AVMALERVPADIRAEGGVSRMSDPEMILEIKDEVSIPVMAKARIGHFVEAQALESLGIDM 100
Query: 147 KKSSKPLVISGEGHRIPFDGNTFDFVFVGGAR-LEKASKPLDFASEIVRTLKPEGF---- 201
S+ L + E H I D N FD FV GAR L +A + +D + ++RT G
Sbjct: 101 VDESEVLTPADEIHHI--DKNAFDIPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGDVI 158
Query: 202 -AVVHVRAKDE 211
AV H+RA +E
Sbjct: 159 EAVKHMRAVNE 169
>sp|P15303|SEC23_YEAST Protein transport protein SEC23 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC23 PE=1 SV=1
Length = 768
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 39 GESCNLGDF----CFFSLPDNFNLVTIGAGTGASGITANKAVRSNIVSPSRRDMYTSKEW 94
G + N+ C+ ++P L G GT A G+ N ++ + S D ++ +
Sbjct: 263 GSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHY 322
Query: 95 IKAVNFYSSVFQDLISEGY 113
KA FY+ + Q + + G+
Sbjct: 323 KKACKFYNQIAQRVAANGH 341
>sp|A9WRT1|UBIE_RENSM Demethylmenaquinone methyltransferase OS=Renibacterium salmoninarum
(strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589
/ NCIMB 2235) GN=ubiE PE=3 SV=1
Length = 237
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 15/94 (15%)
Query: 128 GQDVFALKEIGVEDSIGIFK--KSSKPLV--ISGEGHRIPFDGNTFDFVFVGGARLEKAS 183
G DV AL + S+G+ K K +P + I+G+ +PF N+FD V + L +
Sbjct: 73 GLDVVAL-----DFSLGMLKVGKRRRPDIDFIAGDATALPFADNSFDAVTISFG-LRNVN 126
Query: 184 KPLDFASEIVRTLKPEGFAVVHVRAKDEYSFNSF 217
+P +E++R KP G VV E+S +F
Sbjct: 127 EPKKALAEMLRVTKPGGKLVVA-----EFSHPTF 155
>sp|Q49XS5|UBIE_STAS1 Demethylmenaquinone methyltransferase OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=ubiE PE=3 SV=1
Length = 233
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 137 IGV---EDSIGIFKKSSKPL----VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFA 189
IGV E+ + + K+ +K + ++ G+ +PF+ N FD+V +G L L
Sbjct: 78 IGVDFSENMLEVGKRKTKDMHNIQLVHGDAMNLPFEDNEFDYVTIGFG-LRNVPDYLATL 136
Query: 190 SEIVRTLKPEGFAV 203
E+ R LKP G V
Sbjct: 137 KELNRVLKPGGMIV 150
>sp|B9DNV5|UBIE_STACT Demethylmenaquinone methyltransferase OS=Staphylococcus carnosus
(strain TM300) GN=ubiE PE=3 SV=1
Length = 241
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 147 KKSSKPLVISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
K S ++ G+ +PFD N FD+V +G L + E+ R LKP G AV
Sbjct: 95 KNMSNIQLVQGDAMDLPFDDNEFDYVTIGFG-LRNIPDYVIALKEMNRVLKPGGMAV 150
>sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3
SV=2
Length = 1304
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 226 LVKSRDIDGIDSSLPYIREIVLKKESDLILGHRENLPDGNVANKCSVPGYKQAFVRKAEP 285
L+ ++ G D +P +RE +L++ ++LP N P Y QAF+ +A P
Sbjct: 888 LLNQVEMTGFDWQIPGLRE-------ELVIALIKSLPKSYRRNFVPAPNYAQAFLSRAVP 940
Query: 286 LIMEEPL 292
L E+PL
Sbjct: 941 L--EKPL 945
>sp|Q4L6H3|UBIE_STAHJ Demethylmenaquinone methyltransferase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=ubiE PE=3 SV=1
Length = 239
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 140 EDSIGIFKKSSKPL----VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRT 195
E+ + + K+ +K + ++ G+ +PF+ N+FD+V +G L L E+ R
Sbjct: 84 ENMLEVGKEKTKHMNNIHLVHGDAMNLPFEDNSFDYVTIGFG-LRNVPDYLVALKEMNRV 142
Query: 196 LKPEGFAV 203
LKP G V
Sbjct: 143 LKPGGMIV 150
>sp|Q6GGU0|UBIE_STAAR Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain MRSA252) GN=ubiE PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PF+ N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMELPFEDNSFDYVTIGFG-LRNVPDYLVALKEMNRVLKPGGMVV 150
>sp|P67063|UBIE_STAAW Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain MW2) GN=ubiE PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PF+ N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMELPFEDNSFDYVTIGFG-LRNVPDYLVALKEMNRVLKPGGMVV 150
>sp|A8Z450|UBIE_STAAT Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain USA300 / TCH1516) GN=ubiE PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PF+ N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMELPFEDNSFDYVTIGFG-LRNVPDYLVALKEMNRVLKPGGMVV 150
>sp|Q6G992|UBIE_STAAS Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain MSSA476) GN=ubiE PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PF+ N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMELPFEDNSFDYVTIGFG-LRNVPDYLVALKEMNRVLKPGGMVV 150
>sp|P67062|UBIE_STAAN Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain N315) GN=ubiE PE=1 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PF+ N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMELPFEDNSFDYVTIGFG-LRNVPDYLVALKEMNRVLKPGGMVV 150
>sp|P67061|UBIE_STAAM Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=ubiE PE=1 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PF+ N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMELPFEDNSFDYVTIGFG-LRNVPDYLVALKEMNRVLKPGGMVV 150
>sp|A6QH20|UBIE_STAAE Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain Newman) GN=ubiE PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PF+ N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMELPFEDNSFDYVTIGFG-LRNVPDYLVALKEMNRVLKPGGMVV 150
>sp|Q5HFV2|UBIE_STAAC Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain COL) GN=ubiE PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PF+ N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMELPFEDNSFDYVTIGFG-LRNVPDYLVALKEMNRVLKPGGMVV 150
>sp|A5ISZ9|UBIE_STAA9 Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain JH9) GN=ubiE PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PF+ N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMELPFEDNSFDYVTIGFG-LRNVPDYLVALKEMNRVLKPGGMVV 150
>sp|A6U1T9|UBIE_STAA2 Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain JH1) GN=ubiE PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PF+ N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMELPFEDNSFDYVTIGFG-LRNVPDYLVALKEMNRVLKPGGMVV 150
>sp|A7X2H6|UBIE_STAA1 Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain Mu3 / ATCC 700698) GN=ubiE PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 154 VISGEGHRIPFDGNTFDFVFVGGARLEKASKPLDFASEIVRTLKPEGFAV 203
++ G+ +PF+ N+FD+V +G L L E+ R LKP G V
Sbjct: 102 LVHGDAMELPFEDNSFDYVTIGFG-LRNVPDYLVALKEMNRVLKPGGMVV 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,782,948
Number of Sequences: 539616
Number of extensions: 8660882
Number of successful extensions: 19696
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 19693
Number of HSP's gapped (non-prelim): 32
length of query: 518
length of database: 191,569,459
effective HSP length: 122
effective length of query: 396
effective length of database: 125,736,307
effective search space: 49791577572
effective search space used: 49791577572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)